BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009803
(525 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/521 (77%), Positives = 454/521 (87%), Gaps = 12/521 (2%)
Query: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 62
VLD+EKLRLPS EA S+++A N WTY G++LATETL TSDEAVIAAA+
Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAAA 109
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAVALARAAVKVAKDAAL+V + SA+ +SK ++S + + S W Q TE ERA IIGD
Sbjct: 110 AEAVALARAAVKVAKDAALLVKNFPSAETESK--LTSPSTIDASRWPQFTETERARIIGD 167
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
SV E P EE S Q + +S LE TH+EL+LL++Q+S+ IAVRSRRQTERKARR RA
Sbjct: 168 SVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAA++V+SVK GSTS++KR S+QEVDYSDPLRYLR TTS+SRLLTA+EE++LSA IQDL
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE L+E L+ER GG PTFAQWAAAAGVDQR LR+R+N+G +CKDKMI SNIRLVISIA
Sbjct: 288 LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 348 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 407
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LPFHMVEATYRVKEARKQLYSENGRHP++EEVAEA GLSMKRL AVLL+PKAPRSLDQKI
Sbjct: 408 LPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKI 467
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G+N +LKPSEVIADPEAETAE+LL+K+FMK+DLEKVL+TLNPRE QVVRWRFGLEDGRMK
Sbjct: 468 GMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMK 527
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
TLQEIGE+MGVSRERIRQIESSAFRKLKNKKRTK L QY +
Sbjct: 528 TLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLL 568
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/522 (72%), Positives = 440/522 (84%), Gaps = 8/522 (1%)
Query: 3 TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAAS 62
T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA IAAA+
Sbjct: 67 TTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEASIAAAA 118
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ERA IIG+
Sbjct: 119 AEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGE 178
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKARRTRAA
Sbjct: 179 PVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAA 238
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS GIQDL
Sbjct: 239 EKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDL 298
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVISIA
Sbjct: 299 LKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIA 358
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIR
Sbjct: 359 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIR 418
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LPFHMVEATYRVKEARKQL ENGRHP+++E+AEA GLSMKRL AVL++PKAPRSL+QKI
Sbjct: 419 LPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKI 478
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
GINQNLKPSEVI+DPEAET ED+LIK+FMK+DLEKVLD+LNPRE+QV+RWRFG+EDGRMK
Sbjct: 479 GINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMK 538
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
TLQEIGE+MGVSRERIRQIES AFRKLKNKKRTKHL QY ++
Sbjct: 539 TLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/525 (78%), Positives = 455/525 (86%), Gaps = 2/525 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
T VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAA
Sbjct: 54 TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 113
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119
A+AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I
Sbjct: 114 AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 173
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179
+GDSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR
Sbjct: 174 LGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRA 233
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
RAAEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GI
Sbjct: 234 RAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGI 293
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
QDLLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVI
Sbjct: 294 QDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVI 353
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 354 SIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 413
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL+AVLL+PKAPRSLD
Sbjct: 414 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLD 473
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
QKIGINQNLKPSEVIADP+AETAE+LLIK+FM+EDLEKVL++LNPRE+QV+RWR+GLEDG
Sbjct: 474 QKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDG 533
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
R KTLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY ++
Sbjct: 534 RTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/525 (78%), Positives = 455/525 (86%), Gaps = 2/525 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
T VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAA
Sbjct: 51 TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 110
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119
A+AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I
Sbjct: 111 AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 170
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179
+GDSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR
Sbjct: 171 LGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRA 230
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
RAAEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GI
Sbjct: 231 RAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGI 290
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
QDLLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVI
Sbjct: 291 QDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVI 350
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 351 SIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 410
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL+AVLL+PKAPRSLD
Sbjct: 411 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLD 470
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
QKIGINQNLKPSEVIADP+AETAE+LLIK+FM+EDLEKVL++LNPRE+QV+RWR+GLEDG
Sbjct: 471 QKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDG 530
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
R KTLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY ++
Sbjct: 531 RTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/523 (75%), Positives = 450/523 (86%), Gaps = 1/523 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTS-DEAVIAA 60
T VLD+EKLRLPSLE HS++++ANR WTY G +GP + GTSLA ETL + DEAVIAA
Sbjct: 44 TAVLDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAA 103
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
A+AEAVALARAAVKVAKDAA M +++S K ++K I+S+ D+ +SMW+ LTE+ERA II
Sbjct: 104 AAAEAVALARAAVKVAKDAAEMAKNYSSMKKETKIPIASTTDSFSSMWSLLTEKERADII 163
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 180
GDSV E EEYS Q P + LEPT EEL LL++Q+S+ IAVRS+RQTERKARR R
Sbjct: 164 GDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRAR 223
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AAEKAAANV+SVKSGSTS++KR +QEVD SDPLR+ R +SSSRLL+A EE++LS GIQ
Sbjct: 224 AAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQ 283
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE + E L ER GG P+FAQWAAAAGVDQ LR+RLNYGILCKDKMI SN+RLVIS
Sbjct: 284 DLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVIS 343
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD+SRT
Sbjct: 344 IAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRT 403
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLPFHMV+ATYRVKEARKQLYSENGRHP+++EVAEA GLSMKRL AVLL+PKAPRSLDQ
Sbjct: 404 IRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQ 463
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
K+G N +LK SEV ADPEAETAEDLL+K+FMK+DL KVL +L+PRE QVVRWRFG+EDGR
Sbjct: 464 KMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGR 523
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
MKTLQEIGELMGVSRER+RQIE SAFRKLKNK RTK L QY +
Sbjct: 524 MKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMV 566
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/522 (73%), Positives = 443/522 (84%), Gaps = 1/522 (0%)
Query: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLT-SDEAVIAAAS 62
VL++EKLRLPSLE+HS+++AANR WTY G +GP E GTSLATETL +DEAVIAAA+
Sbjct: 43 VLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAA 102
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAVALARAAVKVAKDAA M ++ S ++K I+S+AD+ +SMW+ LT +ERA IIG
Sbjct: 103 AEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSMWSLLTGKERADIIGV 162
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
S E EE S Q P +S PTHEEL LLE+Q+S+SI VRS+RQT+RKA+R RAA
Sbjct: 163 SFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAA 222
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAAAN + +KSGS ++KR VQEVD SDPLR+ R ++SSRLL+A EE++LS GIQDL
Sbjct: 223 EKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDL 282
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE + E L ER GG PTFAQWAAAA VDQ LR+RLNY ILCKDKMI SNIRLVISIA
Sbjct: 283 LKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIA 342
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
KNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+QAVR+SLSDQSRTIR
Sbjct: 343 KNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIR 402
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LPFHMV+ATYRVKEARKQ YSENGRHP+++EVAEATGLSMKRL AVLL+PKAPRSLDQK+
Sbjct: 403 LPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKM 462
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G N +LK SEV ADPEAETAEDLL+K+FMK+DLE+VL++L+PRE QV+RWRFG+EDGRMK
Sbjct: 463 GFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMK 522
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
TLQEIGELMGVSRERIRQIE SAFRKLKNK RTK L QY ++
Sbjct: 523 TLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/527 (69%), Positives = 427/527 (81%), Gaps = 10/527 (1%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ISS+AD S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNT-----NLLISSTADKR-SKWDQFTEKERAGI 162
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSA--DLEPTHEELKLLEEQV-SQSIAVRSRRQTERKA 176
+G + + + NK + DLE +E L E+ S S+AVRS RQTERKA
Sbjct: 163 LGHLAVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA 222
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
RR + EK A+ + SVK+GS R+KR QEVD++DPLRYLR TTSSS+LLT EE +LS
Sbjct: 223 RRAKGLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELS 282
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
AGIQDLLKLE L+ L+ERCG PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIR
Sbjct: 283 AGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIR 342
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 343 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSD 402
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
QSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLSPK PR
Sbjct: 403 QSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPR 462
Query: 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476
SLDQKIG+NQNLKPSEVIADPEA T+ED+LIK+FM++DL+KVLD+L RE+QV+RWRFG+
Sbjct: 463 SLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGM 522
Query: 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLKNKKR+ HL QY +
Sbjct: 523 EDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRSNHLQQYLV 569
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/530 (68%), Positives = 427/530 (80%), Gaps = 16/530 (3%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T+ LDV KLRLPS + S++ ++R WTY +GPSTE +LA+ETL TSDEAV+A
Sbjct: 49 LTSTLDVAKLRLPSFDTDSDSRISDRPWTYTRTIGPSTEAKYLEALASETLLTSDEAVVA 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAA+KVAKDA L N HN+ K ++SS+AD S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAALKVAKDATLFGNSHNT-----KLSVSSAADKR-SKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTER 174
+G D+ +V S + S DL P ++ E++S S AVRS RQTER
Sbjct: 163 LGHLAVSDTGVVSDRITAPGSLECNKEASDDLTPAEKQEV---EKLSVSSAVRSTRQTER 219
Query: 175 KARRTRAAEKAAANVMS-VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
KARR + EK A+ + S VK+GS+SR+KR + QE+D++DPLRYLR TTSSS+LLTA EE
Sbjct: 220 KARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQ 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
QLS GIQDLLKLE L+ L+ERCG PTF+QWA+AAGVD++ LR+R+ +G CKD+MI S
Sbjct: 280 QLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
NIRLVISIAKNYQGAGM+ QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKS
Sbjct: 340 NIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
LSDQSR IRLPFHMVEATYRVKEARKQLYSE G+ P NEEVAEATGLSMKRL AVLLSPK
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPK 459
Query: 414 APRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWR 473
PRSLDQKIGIN NLKPSEVIADPEAET+ED+L+K+FM++DL+KVLD+L+ RE+QV+RWR
Sbjct: 460 PPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRWR 519
Query: 474 FGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
FG+EDGRMKTLQEIGE MGVSRER+RQI++SAFRKLKNKKR HL QY +
Sbjct: 520 FGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNSHLQQYLV 569
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/530 (68%), Positives = 427/530 (80%), Gaps = 16/530 (3%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S S+AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKS
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
LSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLSPK
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPK 459
Query: 414 APRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWR 473
PRSLDQKIG+NQNLKPSEVIADPEA T+ED+LIK+FM++DL+KVLD+L RE+QV+RWR
Sbjct: 460 PPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWR 519
Query: 474 FGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
FG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLKNKKR HL QY +
Sbjct: 520 FGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/524 (68%), Positives = 428/524 (81%), Gaps = 13/524 (2%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
+T+L +EK +L +L+A S+ N W Y A N ++L+ E+L T++EAVI A
Sbjct: 47 STLLSLEK-KL-ALDAPSDP---NTSWPYIAAA------NFKSTLSAESLLTNEEAVIVA 95
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
A++EA+ALA+AA KVAKDAAL+V A+ + K +SS +D W + E E +
Sbjct: 96 AASEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQME-EVEDGV 154
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 180
+ + A E + P + +DLEP+HEEL+ L+EQ+S SIAVRSRRQTERKA+R R
Sbjct: 155 AEESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVR 214
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
A EKA N S K GS+SRRKR S+QEVDYSDPLRYLR TTS+SRLLT EE++LSAGIQ
Sbjct: 215 ATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQ 274
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE ++E L+ER G PTFAQWAA AGVDQ+ LR+RLNYGI CKDKMI SNIRLVIS
Sbjct: 275 DLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVIS 334
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAKNYQG+GMNLQDLVQEGCRGLV+GAEKFD +KGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 335 IAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRT 394
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLPFHMVEATYRVKEARKQLYSENGR P++EEVAEATGLSMKRL+AVL++PKAPRSL+Q
Sbjct: 395 IRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQ 454
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
KIGINQNLKPSEVI+DP+AETAE+ L+K+FMK+DLE+ LD+LNPRERQVVRWRFG++DGR
Sbjct: 455 KIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGR 514
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
KTLQEIGE++GVSRERIRQIESSAF+KLKNKKRT HL QY ++
Sbjct: 515 TKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS 558
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/530 (68%), Positives = 424/530 (80%), Gaps = 16/530 (3%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N + + ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNYTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S +AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVGLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKS
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
LSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLSPK
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPK 459
Query: 414 APRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWR 473
PRSLDQKIG+NQNLKPSEVIADPEA T ED+LIK+FM++DL+KVLD+L RE+QV+RWR
Sbjct: 460 PPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWR 519
Query: 474 FGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
FG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLKNKKR HL QY +
Sbjct: 520 FGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/532 (68%), Positives = 427/532 (80%), Gaps = 18/532 (3%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S S+AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRL--LTANE 231
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+L LT E
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVRE 279
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E +LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI
Sbjct: 280 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 339
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVR
Sbjct: 340 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 399
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
KSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLS
Sbjct: 400 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLS 459
Query: 412 PKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVR 471
PK PRSLD+KIG+NQNLKPSEVIADPEA T+ED+LIK+FM++DL+KVLD+L RE+QV+R
Sbjct: 460 PKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIR 519
Query: 472 WRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
WRFG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLKNKKR HL QY +
Sbjct: 520 WRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 571
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/523 (67%), Positives = 408/523 (78%), Gaps = 9/523 (1%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 61
T++ DVEKLRLP +E++SN+++A Q T+ +G E T+L + L +E + AA
Sbjct: 60 TSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119
Query: 62 SAEAVALARAAVKVAKDAA-LMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
+A A A LM + KP SK S + AQL E E+ +
Sbjct: 120 AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSG----AQLLENEQ---V 172
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 180
G E + E E +++ AD+EPT EEL+LLE ++ +SI VRS RQ ERKARR R
Sbjct: 173 GSMRNFEGS-ENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRAR 231
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AAEK A+NV+SVK GS SR+KR SVQEVDYSDPLRYLR T+SSRLLT++EE +LSAGIQ
Sbjct: 232 AAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQ 291
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE L + L R G SP+F QWAAAAG+DQR LRRRLN+G CKDKMI SN+RLVIS
Sbjct: 292 DLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVIS 351
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAKNYQG+GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 352 IAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 411
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLPFHMVEATYRVKEARKQL SENG+ PNNEEVAEATGLSMKRL AVL++PKAPRSLDQ
Sbjct: 412 IRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQ 471
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
KIG N NLKPSEVIADPEAETAEDLL K+FM++DLEKVLDTL+ RE+QV+RWRFGLEDGR
Sbjct: 472 KIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGR 531
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
MKTLQEIGELMGVSRERIRQIESSAFRKL+NKK+T +L QY
Sbjct: 532 MKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYMF 574
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 296/381 (77%), Positives = 342/381 (89%), Gaps = 1/381 (0%)
Query: 145 DLEPTHEELKLLEEQV-SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRP 203
D EPT EEL+ +EEQ+ SI RS RQTERKARR RA+ KAA N++S +SGST+R+KR
Sbjct: 192 DDEPTSEELEDVEEQLYDTSIDARSGRQTERKARRVRASGKAATNIVSFRSGSTTRKKRV 251
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
QEVDYSDPLRYLR TT ++RLLT +EE++ S GIQDL+KLE L+E L+E+CGG PTFA
Sbjct: 252 RTQEVDYSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFA 311
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
QWA AGVDQ+ LR+RLNYG+ CK+KMI SNIRLVIS+AKNYQG+GM+LQDLVQEGCRGL
Sbjct: 312 QWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGL 371
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
VRGAEK+DASKGFKFSTYAHWWIKQAVRKSLS QSRTIRLPFHMV ATY+VKEARKQLYS
Sbjct: 372 VRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYS 431
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAE 443
ENGR P++EEVAEATGLSMKRL AVLL+PKAPRSL+QK+GINQ+LK SEV+ADPEAETAE
Sbjct: 432 ENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAE 491
Query: 444 DLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503
+ LIK+FMK+DLEKVLD+LNPRE+QV++WRFG++DGRMKTLQEIGE+MGVSRERIRQIES
Sbjct: 492 EQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIES 551
Query: 504 SAFRKLKNKKRTKHLMQYAIT 524
AFRKLKNKKR KHL QY ++
Sbjct: 552 CAFRKLKNKKRAKHLQQYFVS 572
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/284 (85%), Positives = 265/284 (93%)
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVIS
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
I KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRT
Sbjct: 63 IXKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRT 122
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLPFHMVEATYRVKEARKQL ENGRHP+++E+AEA GLSMKRL AVL++PKAPRSL+Q
Sbjct: 123 IRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQ 182
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
KIGINQNLKPSEVI+DPEAET ED+LIK+FMK+DLEKVLD+LNPRE+QV+RWRFG+EDGR
Sbjct: 183 KIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGR 242
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
MKTLQEIGE+MGVSRERIRQIES AFRKLKNKKRTKHL QY ++
Sbjct: 243 MKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 286
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/361 (60%), Positives = 271/361 (75%), Gaps = 2/361 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTE +ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
KR+ A + PK SLD KIG + ++ EV ADP AETAE++L + MK D+ K LDTL
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
RERQVV RFGLEDGR++TLQEIG MGVSRERIRQIES+AFRKL++KKR L Y
Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558
Query: 523 I 523
+
Sbjct: 559 V 559
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/365 (57%), Positives = 274/365 (75%), Gaps = 2/365 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 218
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 219 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
RLNYGI CK++M+TSN+RLVISIA+ ++G GM+ DL+QEG +GL+RGAEKFD+SKGF+F
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRF 350
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STY+HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A T
Sbjct: 351 STYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDT 410
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKV 458
G+ +KR+ A + PK SLD KIG + ++ EV ADP AETAE++L + MK+D+
Sbjct: 411 GIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHMA 469
Query: 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
LDTL RE+QVV RFGLEDGR++TLQEIG +MGVSRERIRQIES AFRKL++KK+ K L
Sbjct: 470 LDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKAL 529
Query: 519 MQYAI 523
Y +
Sbjct: 530 KDYLV 534
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/365 (57%), Positives = 274/365 (75%), Gaps = 2/365 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 218
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 219 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
RLNYGI CK++M+TSN+RLVISIA+ ++G GM+ DL+QEG +GL+RGAEKFD+SKGF+F
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRF 350
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STY+HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A T
Sbjct: 351 STYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDT 410
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKV 458
G+ +KR+ A + PK SLD KIG + ++ EV ADP AETAE++L + MK+D+
Sbjct: 411 GIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHMA 469
Query: 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
LDTL RE+QVV RFGLEDGR++TLQEIG +MGVSRERIRQIES AFRKL++KK+ K L
Sbjct: 470 LDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKAL 529
Query: 519 MQYAI 523
Y +
Sbjct: 530 KDYLV 534
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 282/371 (76%), Gaps = 11/371 (2%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANVM-SVKSGSTSRRKR---PSVQEVDYSD 212
++Q +++IAV+S RQ+ER+ARRTRA KAA V S+K ++S++KR PS +
Sbjct: 184 DKQDAENIAVKSARQSERRARRTRATMKAAITVRGSLKLVTSSKKKRSKGPSTM-----N 238
Query: 213 PLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD 272
PL L T +LLTA EE++LS GIQDLLKLE ++ L+E GG PTF QWAAAAG D
Sbjct: 239 PLGSLWKMTGR-KLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTD 297
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+ LR+RL++GI CK++M+TSN+RLVISIA+ ++G G+ L DL+QEG +GL+RGAEKFDA
Sbjct: 298 ENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDA 357
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGF+FSTY+HWWIKQA+RKS+S+Q++ RLP HMVEA+YRVKE K+L + R P+NE
Sbjct: 358 SKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTKRLRRKLKRRPSNE 417
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A G+ +KR+ A + PK SLD KIG + ++ EV ADP AETAE++L + MK
Sbjct: 418 EIAVDIGMPVKRVEAAVSLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMK 476
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+D+ + LDTL+PRERQVV+ RFG+ DGR++TLQEIG +MGVSRERIRQIES AFRKL+ K
Sbjct: 477 KDVHQALDTLSPRERQVVKLRFGINDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRGK 536
Query: 513 KRTKHLMQYAI 523
K+ K LM Y +
Sbjct: 537 KKVKCLMDYLV 547
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/363 (60%), Positives = 273/363 (75%), Gaps = 2/363 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
KR+ A + PK SLD KIG + ++ EV ADP AETAE++L + MK D+ K LDTL
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
RERQVV RFGLEDGR++TLQEIG MGVSRERIRQIES+AFRKL++KKR L Y
Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558
Query: 523 ITS 525
+T
Sbjct: 559 VTG 561
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/361 (60%), Positives = 272/361 (75%), Gaps = 2/361 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 200 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 259
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 260 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 378
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 379 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 438
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
KR+ A + PK SLD KIG + ++ EV ADP AETAE++L + MK D+ K LDTL
Sbjct: 439 KRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 497
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
RERQVV RFGLEDGR++TLQEIG MGVSRERIRQIES+AFRKL++KKR L Y
Sbjct: 498 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 557
Query: 523 I 523
+
Sbjct: 558 V 558
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/361 (60%), Positives = 272/361 (75%), Gaps = 2/361 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
KR+ A + PK SLD KIG + ++ EV ADP AETAE++L + MK D+ K LDTL
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
RERQVV RFGLEDGR++TLQEIG MGVSRERIRQIES+AFRKL++KKR L Y
Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558
Query: 523 I 523
+
Sbjct: 559 V 559
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/396 (54%), Positives = 289/396 (72%), Gaps = 9/396 (2%)
Query: 132 EEYSEQQPLNKSADLEPTH----EELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAA 187
+EYS+ L DLE +H +E++L + Q +SIAV+S RQ+ER+ARRTRAA KAA
Sbjct: 157 DEYSDDVLLE---DLESSHGVLNDEVELDDTQDYKSIAVKSERQSERRARRTRAAIKAAT 213
Query: 188 NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
V S + ++S +K+ S +PL L T +LLTA EE++LS GIQDLLKLE
Sbjct: 214 TVRSSQKLASSSKKKRSKGPTTSMNPLGSLWKLTGR-KLLTAKEEVELSNGIQDLLKLEA 272
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
++ L+E G PTF QWAAAAG D++ LR+RL +GI K++M+TSN+RLVISIA+ ++G
Sbjct: 273 IQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAHGIYSKNRMVTSNVRLVISIAREFEG 332
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
G+ L DL+QEG +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+S+Q++ RLP HM
Sbjct: 333 PGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHM 392
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VEA+YRVKE ++L R P+NEE+A G+ +KR+ A + PK SLD KIG +
Sbjct: 393 VEASYRVKECTRRLRRTLQRRPSNEEIAVDIGMPVKRVEAAVNLPKYSVSLDSKIGTT-D 451
Query: 428 LKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEI 487
+ EV ADP AETAE++L + MK+D+ + LD L PRERQVV+ RFGL+DGR++TLQEI
Sbjct: 452 MSYQEVTADPSAETAEEMLNRMSMKKDVHQALDALGPRERQVVKLRFGLDDGRIRTLQEI 511
Query: 488 GELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
G +MGVSRERIRQIE+ AFRKL++KK+ K L Y +
Sbjct: 512 GNIMGVSRERIRQIEAGAFRKLRSKKKVKSLRDYLV 547
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/364 (52%), Positives = 263/364 (72%), Gaps = 10/364 (2%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMS---VKSGSTSRRKRPSVQEVDYSDPLRYL 217
S ++AV+S R+TERKARR RAA KAA S V + ST +++ Q PL
Sbjct: 165 SIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGCQ-----TPLGCF 219
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
T RLLTA +E++ S GIQDLLKLE +++ +++ GG PTF+QWAAAAG D+ LR
Sbjct: 220 YKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLR 278
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
RRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL+QEG +GL+RGAEKFDASKGF+
Sbjct: 279 RRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFR 338
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE ++L E R P+NEE+A
Sbjct: 339 FSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLRRELKRLPSNEEIAVD 398
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEK 457
TG++++R+ A + PK S K+G ++ E++ D AETAE++L + MK+D+
Sbjct: 399 TGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEEVLHRWLMKKDVNT 457
Query: 458 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517
L++L+PRE+ V+R+RFG+E GR +TL +IG++MGVSRERIRQIE AFRKL++KKR +
Sbjct: 458 ALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAFRKLRSKKRVQS 517
Query: 518 LMQY 521
L Y
Sbjct: 518 LQHY 521
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/368 (52%), Positives = 262/368 (71%), Gaps = 9/368 (2%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 346
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE
Sbjct: 347 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEE 406
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A TG+ ++R+ A + PK SL K+G ++ E+ D ETAE++L + MKE
Sbjct: 407 IASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKE 465
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
D+++ LD L+PRERQV+R+RFG++DGR++TL +IG LMGVSRERIRQIE AFRKL+ +K
Sbjct: 466 DVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRK 525
Query: 514 RTKHLMQY 521
+ + L Y
Sbjct: 526 KVQSLQHY 533
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 194/368 (52%), Positives = 262/368 (71%), Gaps = 9/368 (2%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 129 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 184
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 185 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 243
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 244 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 303
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE
Sbjct: 304 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEE 363
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A TG+ ++R+ A + PK SL K+G ++ E+ D ETAE++L + MKE
Sbjct: 364 IASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKE 422
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
D+++ LD L+PRERQV+R+RFG++DGR++TL +IG LMGVSRERIRQIE AFRKL+ +K
Sbjct: 423 DVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRK 482
Query: 514 RTKHLMQY 521
+ + L Y
Sbjct: 483 KVQSLQHY 490
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 194/368 (52%), Positives = 262/368 (71%), Gaps = 9/368 (2%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGW-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 346
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE
Sbjct: 347 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEE 406
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A TG+ ++R+ A + PK SL K+G ++ E+ D ETAE++L + MKE
Sbjct: 407 IASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKE 465
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
D+++ LD L+PRERQV+R+RFG++DGR++TL +IG LMGVSRERIRQIE AFRKL+ +K
Sbjct: 466 DVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRK 525
Query: 514 RTKHLMQY 521
+ + L Y
Sbjct: 526 KVQSLQHY 533
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 171/300 (57%), Positives = 230/300 (76%), Gaps = 1/300 (0%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S+ RLLTA +E++LS GIQD LKLE +++ ++ GG PTF QWAAAAG D+ LR+RL+
Sbjct: 232 SARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLS 291
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
YGI CK+ M+ SN+RLVISIAK ++G G DL+QEG +GL+RGAEKFDASKGF+FSTY
Sbjct: 292 YGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGLIRGAEKFDASKGFRFSTY 351
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE+A TGL+
Sbjct: 352 SHWWIKQAIRKSVLEQTQIIRLPTHMAEASSRVKECRRRLRRQLNRLPTNEEIASDTGLT 411
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
+R+ A + P+ SL K+G ++ E++ D ETAE+ L + FMK+D++ LD+
Sbjct: 412 TRRVEAAMSLPRYSVSLSGKVGCT-DVTYQEIMPDKSTETAEETLHRWFMKKDVDTALDS 470
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
L+PRER+V+R+RFG++DGRM+TL IGELMGVSRERIRQIE +AFRKL++KK+ L QY
Sbjct: 471 LSPREREVIRYRFGMDDGRMRTLHNIGELMGVSRERIRQIEMAAFRKLRSKKKVTSLQQY 530
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/340 (52%), Positives = 242/340 (71%), Gaps = 6/340 (1%)
Query: 182 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A K+ + V + S++R+KR PL T RLLTA +E++ S GIQD
Sbjct: 3 AAKSFSGRNPVAASSSARKKRLK----GCRSPLGCFYKMTGR-RLLTAKQEVEFSQGIQD 57
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
LLKLE +++ L+ GG PTF+QWA AAG D+ LR+RLNYGI CK+ M+ SN+RLVISI
Sbjct: 58 LLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISI 117
Query: 302 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361
A+ ++G GM DL+QEG +GLVRGAEKFDASKGF+FSTY+HWWIKQA+RKS+ +Q++ I
Sbjct: 118 AREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQII 177
Query: 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQK 421
RLP HM EA+ RVKE R++L + R P NEE+A TG+ ++R+ A + PK SL K
Sbjct: 178 RLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSK 237
Query: 422 IGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRM 481
+G ++ E+ D ETAE++L + MKED+++ LD L+PRERQV+R+RFG++DGR+
Sbjct: 238 VGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRL 296
Query: 482 KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+TL +IG LMGVSRERIRQIE AFRKL+ +K+ + L Y
Sbjct: 297 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHY 336
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 221/490 (45%), Positives = 307/490 (62%), Gaps = 29/490 (5%)
Query: 36 PSTEENLGTSLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMV-NHHNSAKPKSK 94
PS L E L + EAV+AAA+ + +L A +VA + A M N H +A P
Sbjct: 56 PSPHRTLPGCFG-EALLNKEAVVAAAAGKP-SLWLAQAEVAGEVARMAQNDHPAALPPRD 113
Query: 95 PAISSSADTNTSMWAQLTERERASIIGDSV-IVEAAPEEEYSEQQPLNKSADLEPTHEEL 153
DT S ++ R + +VE EE+S D + H
Sbjct: 114 -------DTVDSFLSREVLRSEVGLDARRAGLVEMLEGEEHSSIFSDESEDDDDGGH--- 163
Query: 154 KLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVK--SGSTSRRKRPSVQEVDYS 211
S ++ V+S R++ER+ARR RAA K A S+K S++RRKR
Sbjct: 164 -------SIAVTVKSARRSERRARRVRAAMKTAKCSSSMKPVGASSTRRKRLK----GCL 212
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
PL L T RLLTA +E++ S GIQDLLKLE +++ +++ G PTF+QWAAAAG
Sbjct: 213 TPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGT 271
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL+Q+G +GL+RGAEKFD
Sbjct: 272 DENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFD 331
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
ASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE ++L E R P+N
Sbjct: 332 ASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSN 391
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A TG++++R+ A + PK S K+G ++ E++ D AETAE+ L + M
Sbjct: 392 EEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEETLHRWLM 450
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
K+D+ LD+L+PR++QV+R+RFG+E GR +TL +IG+LMGVSRERIRQIE AFRKL++
Sbjct: 451 KKDVNTALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRS 510
Query: 512 KKRTKHLMQY 521
K R + L Y
Sbjct: 511 KNRLQSLQHY 520
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 189/364 (51%), Positives = 258/364 (70%), Gaps = 2/364 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 217
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 227 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 286
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 287 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 345
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
RL G DK+I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD S+GFK
Sbjct: 346 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFK 405
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTYA+WWI+Q++ K+L++QSRTIRLP H+VE+ R++ A + LY E+ R P EEVAE
Sbjct: 406 FSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEV 465
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEK 457
G+SM RL V + P SLD+ +G + + K SE++AD +E+ E ++ K+ K+DL++
Sbjct: 466 AGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDR 525
Query: 458 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517
VLDTL RE+QVVR R+GL+DGRMK+L E+GE +SRER+RQIE A RKL+ RT+H
Sbjct: 526 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 585
Query: 518 LMQY 521
L Y
Sbjct: 586 LKHY 589
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 189/364 (51%), Positives = 258/364 (70%), Gaps = 2/364 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 217
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 130 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 189
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 190 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 248
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
RL G DK+I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD S+GFK
Sbjct: 249 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFK 308
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTYA+WWI+Q++ K+L++QSRTIRLP H+VE+ R++ A + LY E+ R P EEVAE
Sbjct: 309 FSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEV 368
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEK 457
G+SM RL V + P SLD+ +G + + K SE++AD +E+ E ++ K+ K+DL++
Sbjct: 369 AGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDR 428
Query: 458 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517
VLDTL RE+QVVR R+GL+DGRMK+L E+GE +SRER+RQIE A RKL+ RT+H
Sbjct: 429 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 488
Query: 518 LMQY 521
L Y
Sbjct: 489 LKHY 492
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 175/336 (52%), Positives = 241/336 (71%), Gaps = 6/336 (1%)
Query: 186 AANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL 245
++ M S++RRKR PL L T RLLTA +E++ S GIQDLLKL
Sbjct: 92 CSSSMKPVGASSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKL 146
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
E +++ +++ G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK +
Sbjct: 147 EAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEH 206
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
+G GM DL+Q+G +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 207 EGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPA 266
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
HM EA+ RVKE ++L E R P+NEE+A TG++++R+ A + PK S K+G
Sbjct: 267 HMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT 326
Query: 426 QNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQ 485
++ E++ D AETAE+ L + MK+D+ LD+L+PRE+QV+R+RFG+E GR +TL
Sbjct: 327 -DVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSLSPREKQVMRYRFGIEGGRARTLH 385
Query: 486 EIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+IG+LMGVSRERIRQIE AFRKL++K R + L Y
Sbjct: 386 DIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHY 421
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 175/336 (52%), Positives = 241/336 (71%), Gaps = 6/336 (1%)
Query: 186 AANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL 245
++ M S++RRKR PL L T RLLTA +E++ S GIQDLLKL
Sbjct: 192 CSSSMKPVGASSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKL 246
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
E +++ +++ G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK +
Sbjct: 247 EAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEH 306
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
+G GM DL+Q+G +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 307 EGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPA 366
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
HM EA+ RVKE ++L E R P+NEE+A TG++++R+ A + PK S K+G
Sbjct: 367 HMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT 426
Query: 426 QNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQ 485
++ E++ D AETAE+ L + MK+D+ LD+L+PRE+QV+R+RFG+E GR +TL
Sbjct: 427 -DVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSLSPREKQVMRYRFGIEGGRARTLH 485
Query: 486 EIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+IG+LMGVSRERIRQIE AFRKL++K R + L Y
Sbjct: 486 DIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHY 521
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/314 (54%), Positives = 228/314 (72%), Gaps = 2/314 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
D SDP+R YLR ++LLTA EE+ LS IQDLLKLE ++ L G + T +W+
Sbjct: 259 DPSDPVRAYLR-DIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSR 317
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A G++Q RL G KDKM+ SN+RLV+SIAKNYQG GM LQDL+QEG GLVRGA
Sbjct: 318 AVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGA 377
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYAHWWI+QAV +S++DQSRTIRLP H+ E R+ +A++ L E+GR
Sbjct: 378 EKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGR 437
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
NEEVAE GL++++L +V+ S KAP S+++ IG + + E++AD + ++ ED ++
Sbjct: 438 EARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIV 497
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
K+ M++D+E VL TLNPRER+V+R RFGL+DGR KTL+EIG++ V+RERIRQIE+ A R
Sbjct: 498 KQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMR 557
Query: 508 KLKNKKRTKHLMQY 521
KL+ R L +Y
Sbjct: 558 KLRQPSRNSILREY 571
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/362 (48%), Positives = 255/362 (70%), Gaps = 5/362 (1%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRA 219
S +IAVRS R+ ER +R RA KA + + S +++ +P+ D DP+R YLR
Sbjct: 255 SYNIAVRSNRRRERLLKRERALVKADKAATAPPTTSKAKKSQPAY---DPQDPVRAYLR- 310
Query: 220 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 279
++LLT++EE++L+ GIQDLL++E ++ L E+ G PT +WA A G ++ L R
Sbjct: 311 DIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESR 370
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
+ G CKD+M+ SN+RLV+SIAK YQG GM +QDL+QEG GL+RGAEKFD ++GFKFS
Sbjct: 371 IKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFS 430
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYAHWWI+QA+ ++++DQSRTIRLP H+ E R+ +A+ L +E+GR P +EEVAE G
Sbjct: 431 TYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELVG 490
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVL 459
LS+++L V+ S ++P+S++ +G N + EVI D + ++ E+ + K+ +K+DL+ VL
Sbjct: 491 LSIEKLKMVIKSARSPKSMEFPVGKNNDTTLGEVIPDKDIDSPEEAISKRLLKQDLDVVL 550
Query: 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLM 519
TL+PRER V+R R+GL+DGRM+TL+EIG + V+RERIRQIE+ A RKL+ R L
Sbjct: 551 HTLSPRERDVLRLRYGLDDGRMRTLEEIGNVFKVTRERIRQIEAKALRKLRQPSRNTALR 610
Query: 520 QY 521
+Y
Sbjct: 611 EY 612
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 221/314 (70%), Gaps = 4/314 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSPTFAQWAA 267
+DP+R YLR ++LLTA+EE+ LS IQ DLL LE ++ L G P+ +W+
Sbjct: 273 TDPVRAYLR-DIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSR 331
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A G++Q R+ G KDKM+ SN+RLV+SI KNYQG GM L DL+QEG GL+RGA
Sbjct: 332 AVGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGA 391
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYAHWWI+QAV ++++DQSR IRLP H+ E R+ +A+K L E+GR
Sbjct: 392 EKFDPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGR 451
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P +EEVAE G+S+++L ++ S K P S+D+ IG ++ E+IAD + E+ ED LI
Sbjct: 452 QPRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLI 511
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++ +K+D++ VL TLNPRER+V+R RFGL+DG+ +TL+EIG L V+RERIRQIE+ A R
Sbjct: 512 RQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMR 571
Query: 508 KLKNKKRTKHLMQY 521
KL+ R L +Y
Sbjct: 572 KLRQPSRNGVLREY 585
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 158/330 (47%), Positives = 222/330 (67%), Gaps = 2/330 (0%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 45 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 104
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 105 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 164
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 165 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 224
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
R+K+ K L E GR P EE+AE +++++L + S + P SL+ IG ++ +
Sbjct: 225 SRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 284
Query: 432 EVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM 491
+ I + + ET ED + K ++EDLE VLDTL+ RER V+R R+GL+DGRMKTL+EIG++
Sbjct: 285 DFI-EADGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIF 343
Query: 492 GVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 344 NVTRERIRQIEAKALRKLRHPNRNSILKEY 373
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 158/330 (47%), Positives = 222/330 (67%), Gaps = 2/330 (0%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 61 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 120
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 121 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 180
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 181 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 240
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
R+K+ K L E GR P EE+AE +++++L + S + P SL+ IG ++ +
Sbjct: 241 SRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 300
Query: 432 EVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM 491
+ I + + ET ED + K ++EDLE VLDTL+ RER V+R R+GL+DGRMKTL+EIG++
Sbjct: 301 DFI-EADGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIF 359
Query: 492 GVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 360 NVTRERIRQIEAKALRKLRHPNRNSILKEY 389
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 219/325 (67%), Gaps = 2/325 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
SRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 54 SRRKESATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHE 113
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 114 SRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 173
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 174 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 233
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIAD 436
K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I +
Sbjct: 234 TTKILSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 292
Query: 437 PEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
+ ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RE
Sbjct: 293 ADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRE 352
Query: 497 RIRQIESSAFRKLKNKKRTKHLMQY 521
RIRQIE+ A RKL++ R L +Y
Sbjct: 353 RIRQIEAKALRKLRHPNRNSILKEY 377
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 215/326 (65%), Gaps = 9/326 (2%)
Query: 201 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
KRPS +D +R S LL A +E++L+ IQDL+ LE +RE L E G
Sbjct: 196 KRPS------TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 261 TFA--QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+ QWAAAAG++ LR+RL+ G K++MI +N+RLV+SIAK Y M+ QDL+QE
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQE 309
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
GC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E R+ +
Sbjct: 310 GCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKME 369
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGI-NQNLKPSEVIADP 437
++ NGR P EE+A +S++++ + + +AP SL Q +G N+ + + D
Sbjct: 370 QKFALYNGRPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDA 429
Query: 438 EAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRER 497
AE E + K +KEDLE VL+TLNPRER V+R R+GL+DGR+KTL+EIG + V+RER
Sbjct: 430 NAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRER 489
Query: 498 IRQIESSAFRKLKNKKRTKHLMQYAI 523
IRQIE+ A RKLK R + L +Y +
Sbjct: 490 IRQIEAKALRKLKQPSRNQVLQEYFV 515
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 165/370 (44%), Positives = 237/370 (64%), Gaps = 12/370 (3%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPL-RYLRA 219
S+++AV+S R+ ER +R RA EKA ++ S + S+ + SDP+ YLR
Sbjct: 207 SRNVAVKSNRKNERFRKRERALEKAGKVAFALASSPPVPKADKSLIKHRLSDPICSYLR- 265
Query: 220 TTSSSRLLTANEEMQLSAGIQ---------DLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+S+LLTA EE+ LS IQ LKLE +R L G PT ++W+ A G
Sbjct: 266 DVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVG 325
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++Q R+ G KDK++ SN+RLV+SI KNYQG GM L DL+Q G GL+RGAEKF
Sbjct: 326 MNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGAEKF 385
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D GFKFSTYA WWI+QAV +S++DQSR IRLP H+ E R+ ++R + + GR
Sbjct: 386 DPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEVISRINKSRMMIAEDQGRQAR 445
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+EEVA A G+S+++L +L S + P S+DQ IG +++L E++AD +A+D L +
Sbjct: 446 DEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSADDFLTNEV 505
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+K+D++ VL TL+P ER+V+R RFGL+D + TL++IG V+RERIRQIE A RKL+
Sbjct: 506 LKQDIDGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIEVRALRKLR 565
Query: 511 NKKRTKHLMQ 520
+ R ++++Q
Sbjct: 566 HPTR-RNILQ 574
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 155/332 (46%), Positives = 221/332 (66%), Gaps = 2/332 (0%)
Query: 191 SVKSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
+VK+ T+ R+ ++ Y+ D +R RLL A EE++L+ I DLL+LE +R
Sbjct: 40 TVKTALTAARRGERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIR 99
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E +++R P+ A+WA + E RRRL YG KDKM+ SN+RLV+SIAK Y G
Sbjct: 100 ERMADRLERYPSDAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRG 159
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 160 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 219
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 220 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 279
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG+
Sbjct: 280 LGDFI-EADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQ 338
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 339 IFNVTRERIRQIEAKALRKLRHPNRNSILKEY 370
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 155/332 (46%), Positives = 222/332 (66%), Gaps = 4/332 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSG + SRR+ P+ ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 60 KSGKAAKSRRRTPTAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVR 119
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ L ++ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 120 DRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 179
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 180 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 239
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 240 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 299
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG+
Sbjct: 300 LGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQ 358
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 359 IFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 390
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/341 (46%), Positives = 223/341 (65%), Gaps = 5/341 (1%)
Query: 185 AAANVMSVKS---GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A+V S KS +T RR+ S ++ D +R RLL A EE++L+ I D
Sbjct: 45 GVADVSSKKSRKLSATPRRRGQSKKKPFTEDSIRVYLQEIGRIRLLRAEEEIELARQIAD 104
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 300
LL LE +R L E G PT +WA A+ + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 105 LLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVS 164
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 165 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 224
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLP H+ E R+K+ K L + GR P EE+AE +++++L + S + P SL+
Sbjct: 225 IRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIEKLRFIAKSAQLPISLET 284
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
IG ++ + + I + + ET ED + K ++EDLE VLD+L+PRER V+R R+GL+DGR
Sbjct: 285 PIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDSLSPRERDVLRLRYGLDDGR 343
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
MKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 344 MKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 384
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/331 (46%), Positives = 217/331 (65%), Gaps = 14/331 (4%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
STSRR+ S++ YL+ S S LLT +E++L+ IQDL+ LEG+RE L E
Sbjct: 247 STSRRQTDSMKT--------YLKDIGSVS-LLTGEQEVELAMRIQDLVYLEGVREQLEEE 297
Query: 256 CGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
++ WA AA V +REL+ RL+ G K++MI +N+RLV+SIAK Y M
Sbjct: 298 AKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANKSM 357
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEGC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E
Sbjct: 358 SFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 417
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+ + +QL + GR P EE+AE +++++++ + + P SL Q + + +
Sbjct: 418 ISRMSKVERQLVMKYGRDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTV 477
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
E + D AE +D K +KEDLE VL+TL+PRER V+R R+G++DGR+KTL+EIG +
Sbjct: 478 EETLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNV 537
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL+ R L +Y
Sbjct: 538 FSVTRERIRQIEAKALRKLRQPSRNGILREY 568
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 220/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 209/314 (66%), Gaps = 3/314 (0%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQWAAA 268
+D +R S LL A +E++L+ IQDL+ LE +RE L E G T QWA+A
Sbjct: 14 TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASA 73
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
AG++ + L +RL G K++MI +N+RLV+SIAK Y + M+ QDL+QEGC GL+RGAE
Sbjct: 74 AGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAE 133
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E R+ + ++ NGR+
Sbjct: 134 KFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRN 193
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI-GINQNLKPSEVIADPEAETAEDLLI 447
P EE+A +S +++ + + +AP SL Q + G N+ + + D AE E +
Sbjct: 194 PTTEEIAAEMDMSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSG 253
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
K +KEDLE VL+TLNPRER V+R R+GL+DGR+KTL+EIG + V+RERIRQIE+ A R
Sbjct: 254 KSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALR 313
Query: 508 KLKNKKRTKHLMQY 521
KLK R L +Y
Sbjct: 314 KLKQPSRNSILQEY 327
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/327 (46%), Positives = 218/327 (66%), Gaps = 1/327 (0%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE LS+
Sbjct: 62 GVKSRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQ 121
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P ++WA A V + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 122 QLDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 181
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 182 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 241
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVI 434
K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I
Sbjct: 242 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 301
Query: 435 ADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVS 494
+ + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++ V+
Sbjct: 302 -ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVT 360
Query: 495 RERIRQIESSAFRKLKNKKRTKHLMQY 521
RERIRQIE+ A RKL++ R L +Y
Sbjct: 361 RERIRQIEAKALRKLRHPNRNSVLKEY 387
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 154/331 (46%), Positives = 217/331 (65%), Gaps = 2/331 (0%)
Query: 191 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
+ K+ ST RR +P + D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 ATKARSTRRRAQPKKKHY-TEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L + P A+WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 116 HLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 235
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 236 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 295
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 296 GDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQI 354
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 355 FNVTRERIRQIEAKALRKLRHPNRNSILKEY 385
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 220/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 KLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 155/330 (46%), Positives = 219/330 (66%), Gaps = 4/330 (1%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
K G T R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 64 KGGKT--RRRAQTKKKQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREK 121
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
LS+R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 122 LSDRLDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 181
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 182 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 241
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 242 SRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 301
Query: 432 EVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM 491
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 302 DFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIF 360
Query: 492 GVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 361 NVTRERIRQIEAKALRKLRHPNRNSVLKEY 390
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 220/332 (66%), Gaps = 4/332 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSG + SRR+ P ++ Y+ D +R RLL A+EE++L+ I +LL+LE R
Sbjct: 59 KSGKAAKSRRRTPIAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERAR 118
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L ER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 ERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 238
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 298
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG+
Sbjct: 299 LGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQ 357
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 IFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 389
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 220/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 60 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 119
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 120 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 179
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 180 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 239
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 240 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 299
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 300 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 389
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 154/328 (46%), Positives = 215/328 (65%), Gaps = 2/328 (0%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 63 GVAKSRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLV 122
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
E P +WA+A + E RRRL G KDKM+ SN+RLV+SIAK Y G++ Q
Sbjct: 123 EHNHCEPEDREWASAVDMALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 182
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R
Sbjct: 183 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 242
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEV 433
+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ + +
Sbjct: 243 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 302
Query: 434 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 493
I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V
Sbjct: 303 I-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNV 361
Query: 494 SRERIRQIESSAFRKLKNKKRTKHLMQY 521
+RERIRQIE+ A RKL++ R L +Y
Sbjct: 362 TRERIRQIEAKALRKLRHPNRNSILKEY 389
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 220/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 220/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 220/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 58 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 117
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 118 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 177
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 178 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 237
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 238 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 297
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 298 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 356
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 357 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 387
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 151/323 (46%), Positives = 215/323 (66%), Gaps = 2/323 (0%)
Query: 200 RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L ++
Sbjct: 59 RRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDR 118
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+P A+WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QE
Sbjct: 119 TPQDAEWANAVNMTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 178
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 179 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 238
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPE 438
K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I + +
Sbjct: 239 KLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESD 297
Query: 439 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERI 498
ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERI
Sbjct: 298 GETPEDQVAKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERI 357
Query: 499 RQIESSAFRKLKNKKRTKHLMQY 521
RQIE+ A RKL++ R L +Y
Sbjct: 358 RQIEAKALRKLRHPNRNSVLKEY 380
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 217/332 (65%), Gaps = 4/332 (1%)
Query: 193 KSGS--TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSGS R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 59 KSGSKVAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIR 118
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L E P +WA A G+ R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 EQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 238
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 298
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG+
Sbjct: 299 LGDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQ 357
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 IFNVTRERIRQIEAKALRKLRHPNRNSILKEY 389
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/331 (46%), Positives = 219/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 219/333 (65%), Gaps = 3/333 (0%)
Query: 191 SVKSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 248
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 58 DTKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 117
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
R+ L E+ P + +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 118 RDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNR 177
Query: 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 368
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+
Sbjct: 178 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
Query: 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNL 428
E R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 238 ETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 297
Query: 429 KPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIG 488
+ + I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG
Sbjct: 298 RLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIG 356
Query: 489 ELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 357 QIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 389
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 221/351 (62%), Gaps = 13/351 (3%)
Query: 172 TERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTAN 230
T KA+ TR A K A RR+ ++ Y+ D +R RLL A
Sbjct: 64 TATKAKATRGAAKGKA-----------RRRTAQTKKKHYTEDSIRLYLQEIGRIRLLRAE 112
Query: 231 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKM 290
EE++L+ I DLL+LE +R+ + ++ PT A WA A + RRRL G KDKM
Sbjct: 113 EEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGRRAKDKM 172
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 173 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 232
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 233 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAK 292
Query: 411 SPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVV 470
S + P SL+ IG ++ + + I + + ET ED + K ++EDLE VL TL+PRER V+
Sbjct: 293 SAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLLREDLESVLSTLSPRERDVL 351
Query: 471 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 352 RLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 402
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 222/331 (67%), Gaps = 3/331 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 62 KSGKAAKSRRRSQNKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 121
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L ++ P +++WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 122 RLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 181
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 182 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 241
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 242 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 301
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 302 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 360
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 361 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 391
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/326 (46%), Positives = 215/326 (65%), Gaps = 1/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ P+ ++ D +R RLL A EE++L+ I DLL+LE +RE ++E
Sbjct: 53 SASRRRDPNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEH 112
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G PT +W+ A ++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 113 MGRFPTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDL 172
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 173 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 232
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+ K L E R P EE+A +++++L + S + P SL+ IG ++ + + I
Sbjct: 233 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI- 291
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
+ + E ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+R
Sbjct: 292 EADGENPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 351
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIE+ A RKL++ R L +Y
Sbjct: 352 ERIRQIEAKALRKLRHPNRNSILKEY 377
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 207/313 (66%), Gaps = 1/313 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL+LE R L G PT +WA +
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE +++++L + S + P SL+ IG ++ + + I + + ET ED + K +
Sbjct: 263 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKSLL 321
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VLDTL+PRER V+R R+GLEDGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 322 REDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 381
Query: 512 KKRTKHLMQYAIT 524
R L +Y T
Sbjct: 382 PNRNSILKEYIRT 394
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 156/341 (45%), Positives = 220/341 (64%), Gaps = 11/341 (3%)
Query: 186 AANVMSVKSGSTSRR----KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A+N + K +T RR K+P + D +R RLL A EE++L+ I D
Sbjct: 55 ASNKKARKLPATRRRTQTKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIAD 109
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 300
LL LE +R E G PT +WA A + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 110 LLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIGRRAKDKMVQSNLRLVVS 169
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 170 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 229
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLP H+ E R+K+ K L + GR P EE+AE +++++L + S + P SL+
Sbjct: 230 IRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIEKLRFIAKSAQLPISLET 289
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
IG ++ + + I + + ET ED + K ++EDLE VLD+L+PRER V+R R+GL+DGR
Sbjct: 290 PIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDSLSPRERDVLRLRYGLDDGR 348
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
MKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 349 MKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 389
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/327 (46%), Positives = 217/327 (66%), Gaps = 1/327 (0%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G ++RR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE LSE
Sbjct: 46 GRSNRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSE 105
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P +WA ++ R RL+ G K+KM+ SN+RLV+SIAK Y G++ QD
Sbjct: 106 QLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQD 165
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 166 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 225
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVI 434
K+ K L E GR P EE+A+ +++++L + S + P SL+ IG ++ + + I
Sbjct: 226 KKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 285
Query: 435 ADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVS 494
+ + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+
Sbjct: 286 -EADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVT 344
Query: 495 RERIRQIESSAFRKLKNKKRTKHLMQY 521
RERIRQIE+ A RKL++ R L +Y
Sbjct: 345 RERIRQIEAKALRKLRHPNRNSILKEY 371
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 218/331 (65%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLE+VLD+L PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKSLLREDLERVLDSLGPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 216/325 (66%), Gaps = 2/325 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ LS++
Sbjct: 48 STRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQL 107
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P ++WA + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 108 EREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 167
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 168 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 227
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIAD 436
K L E GR P EE+A+ +++++L + S + P SL+ IG ++ + + I +
Sbjct: 228 TTKILSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 286
Query: 437 PEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
+ ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RE
Sbjct: 287 ADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRE 346
Query: 497 RIRQIESSAFRKLKNKKRTKHLMQY 521
RIRQIE+ A RKL++ R L +Y
Sbjct: 347 RIRQIEAKALRKLRHPNRNSILKEY 371
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 152/332 (45%), Positives = 219/332 (65%), Gaps = 3/332 (0%)
Query: 192 VKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
VK+G + R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +R
Sbjct: 54 VKAGKVVKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVR 113
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L +R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 EQLCDRLDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 173
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 174 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 233
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 234 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 293
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I + + ET ED + K ++EDLEKVLD L+PRER V+R R+GL+DGRMKTL+EIG+
Sbjct: 294 LGDFI-ESDGETPEDQVSKNLLREDLEKVLDGLSPRERDVLRLRYGLDDGRMKTLEEIGQ 352
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 353 IFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 384
>gi|253761922|ref|XP_002489335.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
gi|241946983|gb|EES20128.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
Length = 238
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 146/234 (62%), Positives = 184/234 (78%), Gaps = 1/234 (0%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
M+TSN+RLVISIA+ ++G GM+L DL+QEG +GL+RGAEKFDASKGF+FSTY+HWWIKQA
Sbjct: 1 MVTSNVRLVISIAREFEGPGMDLYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQA 60
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +KR+ A +
Sbjct: 61 MRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIALDTGMPIKRVEAAV 120
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
PK SLD KIG + ++ EV ADP AETAE++L + MK+D+ K LDTL RE+QV
Sbjct: 121 NLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHKALDTLTTREKQV 179
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
V RFGLED R++TLQEIG +MGVSRERIRQIES AFRKL++KKR K L Y +
Sbjct: 180 VVLRFGLEDDRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKRVKALKDYLV 233
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 220/331 (66%), Gaps = 3/331 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +RE
Sbjct: 59 KSGKAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLLEQLDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKSLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 218/331 (65%), Gaps = 3/331 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 177 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 236
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 237 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 296
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 297 GDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQI 355
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 356 FNVTRERIRQIEAKALRKLRHPNRNSILKEY 386
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 218/331 (65%), Gaps = 3/331 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 177 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 236
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 237 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 296
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 297 GDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQI 355
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 356 FNVTRERIRQIEAKALRKLRHPNRNSILKEY 386
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/339 (45%), Positives = 217/339 (64%), Gaps = 1/339 (0%)
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
E A A K +SRR+ S ++ D +R RLL A EE++L+ I DL
Sbjct: 35 EDAIAEPEDRKVRGSSRRRETSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADL 94
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE + E L +R G P +WA A ++ +RRL G KDKM+ SN+RLV+SIA
Sbjct: 95 LELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIA 154
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 155 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 214
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+ E R+K+ K L E R P EE+A +++++L + S + P SL+ I
Sbjct: 215 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 274
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMK
Sbjct: 275 GKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 333
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
TL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 334 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 372
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/326 (46%), Positives = 215/326 (65%), Gaps = 2/326 (0%)
Query: 197 TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
T+ R+R + ++ Y+ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 50 TATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 169
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 170 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 229
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+ K L E R P EE+A +++++L + S + P SL+ IG ++ + + I
Sbjct: 230 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI- 288
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
+ + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+R
Sbjct: 289 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 348
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIE+ A RKL++ R L +Y
Sbjct: 349 ERIRQIEAKALRKLRHPNRNSILKEY 374
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 218/331 (65%), Gaps = 3/331 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLE+VLD+L PRER V+R R+GL++GRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKSLLREDLERVLDSLGPRERDVLRLRYGLDNGRMKTLEEIGQI 357
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 223/333 (66%), Gaps = 3/333 (0%)
Query: 191 SVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 248
+VK+G ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 56 AVKAGKAAKGRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 115
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
+ L ++ P ++WA A + ++ R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 116 GDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNR 175
Query: 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 368
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+
Sbjct: 176 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 235
Query: 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNL 428
E R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 236 ETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 295
Query: 429 KPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIG 488
+ + I + + ET ED + K ++EDLEKVLD+L+PRER V+R R+GL+DGRMKTL+EIG
Sbjct: 296 RLGDFI-ESDGETPEDQVSKSLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIG 354
Query: 489 ELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 355 QIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 387
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 151/326 (46%), Positives = 212/326 (65%), Gaps = 1/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S +RR+ ++ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 51 SATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRN 110
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 111 LGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 170
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 171 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 230
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+ K L E R P EE+A +++++L + S + P SL+ IG ++ + + I
Sbjct: 231 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI- 289
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
+ + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+R
Sbjct: 290 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 349
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIE+ A RKL++ R L +Y
Sbjct: 350 ERIRQIEAKALRKLRHPNRNSILKEY 375
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 151/339 (44%), Positives = 224/339 (66%), Gaps = 3/339 (0%)
Query: 185 AAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
A ++ +KSG ++ R R + ++ Y+ D +R RLL A+EE++L+ I DL
Sbjct: 47 AQSDEDDLKSGKVAKSRTRTAGKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADL 106
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE +RE L P ++WA A ++ + +RRL G K+KM+ SN+RLV+SIA
Sbjct: 107 LELERIREELIYHLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIA 166
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 167 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 226
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+ E R+K+ K L E GR P EE+A + +++++L + S + P SL+ I
Sbjct: 227 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPI 286
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G ++ + + I + + ET ED + K ++EDLE VL++L+PRER V+R R+GL+DGRMK
Sbjct: 287 GKEEDSRLGDFI-ESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMK 345
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
TL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 346 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 384
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 206/302 (68%), Gaps = 2/302 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R YLR ++LL+A+EE+ LS IQD+LKLE +R L G PT ++W+ A
Sbjct: 268 SDPIRSYLR-DIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAV 326
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+DQ L R+ G KDK++ SN+RLV+SI KNYQG GM L DL+QEG GL+RGAEK
Sbjct: 327 SLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEK 386
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD G+KFSTYA WWI+QAV ++++DQSR IRLP H+ E R+ +A+ + E GR P
Sbjct: 387 FDPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQP 446
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
+EEVA G+S+++L ++ S + P S+D+ IG + E++AD + ED ++ +
Sbjct: 447 RDEEVAAMVGMSVEKLLFIVKSARPPTSMDRPIGKDGEQSLGEMVADKGVGSPEDDIMTQ 506
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
+K+D+E VL +LNP ER+V+R RFGL + TL+++G + V+RERIRQIE+ A RKL
Sbjct: 507 VLKQDIEDVLRSLNPMEREVLRLRFGLSGAQSMTLKDLGIIFKVTRERIRQIEAKALRKL 566
Query: 510 KN 511
++
Sbjct: 567 RH 568
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 211/324 (65%), Gaps = 1/324 (0%)
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 56 SRRRVQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLD 115
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
P +WAA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 116 REPHDREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 176 EGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKT 235
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADP 437
K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I +
Sbjct: 236 TKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EA 294
Query: 438 EAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRER 497
+ E ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RER
Sbjct: 295 DGEMPEDQVSKSLLREDLEGVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRER 354
Query: 498 IRQIESSAFRKLKNKKRTKHLMQY 521
IRQIE+ A RKL++ R L +Y
Sbjct: 355 IRQIEAKALRKLRHPNRNSILKEY 378
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 214/327 (65%), Gaps = 1/327 (0%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G ++RR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L +
Sbjct: 51 GRSTRRRSQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYD 110
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P +WA + + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 111 KLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 170
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 171 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 230
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVI 434
K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I
Sbjct: 231 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 290
Query: 435 ADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVS 494
+ + ET ED + K ++EDLE VL TL+PRER V++ R+GL+DGRMKTL+EIG+L V+
Sbjct: 291 -ESDGETPEDQVSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVT 349
Query: 495 RERIRQIESSAFRKLKNKKRTKHLMQY 521
RERIRQIE+ A RKL++ R L +Y
Sbjct: 350 RERIRQIEAKALRKLRHPNRNSVLKEY 376
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 212/325 (65%), Gaps = 1/325 (0%)
Query: 197 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
T+RR+ S ++ D +R RLL A+EE++L+ I DLL+LE + + L +R
Sbjct: 46 TARRRGQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRL 105
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P +WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 106 EREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 165
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 166 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 225
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIAD 436
K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I +
Sbjct: 226 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 284
Query: 437 PEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
+ ET ED + K ++EDLE VLDTL+PRER V++ R+GL+DGRMKTL+EIG++ V+RE
Sbjct: 285 SDGETPEDQVSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRE 344
Query: 497 RIRQIESSAFRKLKNKKRTKHLMQY 521
RIRQIE+ A RKL++ R L +Y
Sbjct: 345 RIRQIEAKALRKLRHPNRNSVLKEY 369
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 213/325 (65%), Gaps = 1/325 (0%)
Query: 197 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
+ RRK + ++ D +R RLL A+EE++L+ I DLL+LE +R L+E+
Sbjct: 56 SGRRKAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQL 115
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
PT A+WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 116 EREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 175
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 176 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 235
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIAD 436
K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I +
Sbjct: 236 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 294
Query: 437 PEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
+ ET ED + K ++EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RE
Sbjct: 295 SDGETPEDQVSKNLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRE 354
Query: 497 RIRQIESSAFRKLKNKKRTKHLMQY 521
RIRQIE+ A RKL++ R L +Y
Sbjct: 355 RIRQIEAKALRKLRHPNRNSVLKEY 379
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/327 (45%), Positives = 214/327 (65%), Gaps = 1/327 (0%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G TSRR+ + ++ D +R RLL A EE++L+ I DLL+LE + + L+E
Sbjct: 45 GKTSRRRTQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAE 104
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
P A+WA A + + +RRL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 105 TLQRDPQDAEWAEAVDMPLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 164
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 165 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 224
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVI 434
K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I
Sbjct: 225 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 284
Query: 435 ADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVS 494
+ + ET ED + K ++EDLE VL TL+ RER V+R R+GL+DGRMKTL+EIG++ V+
Sbjct: 285 -ESDGETPEDEVSKSLLREDLESVLGTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVT 343
Query: 495 RERIRQIESSAFRKLKNKKRTKHLMQY 521
RERIRQIE+ A RKL++ R L +Y
Sbjct: 344 RERIRQIEAKALRKLRHPNRNSILKEY 370
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/325 (45%), Positives = 213/325 (65%), Gaps = 2/325 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I +LL+LE + E L +
Sbjct: 58 STRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQL 117
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P ++WA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 118 DREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 177
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 178 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 237
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIAD 436
K L E GR P EE+A +++++L + S + P SL+ IG ++ + + I +
Sbjct: 238 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 296
Query: 437 PEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
+ ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RE
Sbjct: 297 ADGETPEDEVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRE 356
Query: 497 RIRQIESSAFRKLKNKKRTKHLMQY 521
RIRQIE+ A RKL++ R L +Y
Sbjct: 357 RIRQIEAKALRKLRHPNRNSILKEY 381
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/330 (45%), Positives = 214/330 (64%), Gaps = 1/330 (0%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K ST RR+ + ++ D +R RLL A EE++L+ I DLL+LE RE L
Sbjct: 47 KKLSTIRRQETNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKL 106
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+ P +WAA+ ++ RRRL G K+KM+ SN+RLV+SIAK Y G++
Sbjct: 107 WQELKRIPNDREWAASVEMELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 166
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 167 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 226
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSE 432
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ + +
Sbjct: 227 RIKKTTKILSQEMGRKPTEEEIATHMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 286
Query: 433 VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG 492
I + + ET ED + K ++EDLE VLD+L+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 287 FI-EADGETPEDDVSKNLLREDLEHVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 345
Query: 493 VSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 346 VTRERIRQIEAKALRKLRHPNRNSILKEYV 375
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 215/325 (66%), Gaps = 2/325 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ L ++
Sbjct: 55 STRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQL 114
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P +WA ++ R+RL G K+KM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 115 EREPKEGEWAKEVEMELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLI 174
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 175 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 234
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIAD 436
K L E GR P EE+A+ +++++L + S + P SL+ IG ++ + + I +
Sbjct: 235 TTKILSQELGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 293
Query: 437 PEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
+ ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RE
Sbjct: 294 ADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRE 353
Query: 497 RIRQIESSAFRKLKNKKRTKHLMQY 521
RIRQIE+ A RKL++ R L +Y
Sbjct: 354 RIRQIEAKALRKLRHPNRNSILKEY 378
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 218/331 (65%), Gaps = 3/331 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 41 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 100
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 101 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 160
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 161 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 220
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 221 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 280
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 281 GDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQI 339
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 340 FNVTRERIRQIEAKALRKLRHPNRNSILKEY 370
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 154/328 (46%), Positives = 215/328 (65%), Gaps = 2/328 (0%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G+ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 59 GAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLI 118
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G++ Q
Sbjct: 119 EHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 178
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R
Sbjct: 179 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 238
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEV 433
+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ + +
Sbjct: 239 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 298
Query: 434 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 493
I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V
Sbjct: 299 I-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNV 357
Query: 494 SRERIRQIESSAFRKLKNKKRTKHLMQY 521
+RERIRQIE+ A RKL++ R L +Y
Sbjct: 358 TRERIRQIEAKALRKLRHPNRNSILKEY 385
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 218/331 (65%), Gaps = 3/331 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 56 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 116 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 235
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++ +
Sbjct: 236 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 295
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I + + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++
Sbjct: 296 GDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQI 354
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 355 FNVTRERIRQIEAKALRKLRHPNRNSILKEY 385
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/310 (48%), Positives = 207/310 (66%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED + K +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 327
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG+L V+RERIRQIE+ A RKL++
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 387
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 388 PNRNSILKEY 397
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/310 (48%), Positives = 207/310 (66%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED + K +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 327
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG+L V+RERIRQIE+ A RKL++
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 387
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 388 PNRNSILKEY 397
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/310 (48%), Positives = 207/310 (66%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 193
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 194 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 253
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED + K +
Sbjct: 254 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 312
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG+L V+RERIRQIE+ A RKL++
Sbjct: 313 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 372
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 373 PNRNSILKEY 382
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 217/335 (64%), Gaps = 7/335 (2%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
K+G R+R + ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 47 KAGKAKGRRRATAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDR 106
Query: 252 LSERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 306
+SE+ P + WA+ + R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 107 ISEQLDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYM 166
Query: 307 GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 366
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H
Sbjct: 167 NRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVH 226
Query: 367 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
+ E R+K+ K L E GR P EE+AE +++++L + S + P SL+ IG +
Sbjct: 227 LYETISRIKKTTKLLSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEE 286
Query: 427 NLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQE 486
+ + + I + + ET ED + K ++EDLE VL TL+PRER V++ R+GL+DGRMKTL+E
Sbjct: 287 DSRLGDFI-ESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEE 345
Query: 487 IGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
IG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 346 IGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 380
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/339 (44%), Positives = 211/339 (62%), Gaps = 10/339 (2%)
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAA + S+K G V D +R RLL +EE++L+ I DL
Sbjct: 173 EKAAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADL 223
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE L G P +WAA + + RRRL G K+KM+ SN+RLV+SIA
Sbjct: 224 LQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIA 283
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 284 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 343
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+ E R+K+ K L E GR P EE+AE+ +++++L + S + P SL+ I
Sbjct: 344 LPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 403
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G ++ + + I + + E E + K ++EDLE VL TL+PRER V+R R+GL+DGRMK
Sbjct: 404 GKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 462
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
TL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 463 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEY 501
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/310 (46%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L E + G P +WAA +
Sbjct: 134 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEM 193
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 194 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 253
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 254 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 313
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 314 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLL 372
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 373 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRH 432
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 433 PNRNGVLKEY 442
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/297 (47%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLL +EE++L+ I DLL LE L E + G P +WA+ + + RRRL G
Sbjct: 164 RLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFRRRLMLGR 223
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA W
Sbjct: 224 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 283
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P EE+AE+ +++++
Sbjct: 284 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 343
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
L + S + P SL+ IG ++ + + I + + E E + K ++EDLE VL TL+P
Sbjct: 344 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLLREDLEGVLATLSP 402
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 403 RERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEY 459
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 201/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P +WAA +
Sbjct: 154 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDM 213
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 214 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 273
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 274 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTE 333
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 334 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 392
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 393 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 452
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 453 PNRNGVLKEY 462
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/314 (46%), Positives = 204/314 (64%), Gaps = 5/314 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG-GSP---TFAQWAA 267
D +R RLL A+EE++L+ I DLL+LE RE L+ G P + + WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R A
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 217
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR
Sbjct: 218 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 277
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+A +++++L + S + P SL+ IG ++ + + I + + ET +D +
Sbjct: 278 KPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPDDQVA 336
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
K ++EDLE VL TL+PRER V++ R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A R
Sbjct: 337 KNLLREDLENVLGTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 396
Query: 508 KLKNKKRTKHLMQY 521
KL++ R L +Y
Sbjct: 397 KLRHPNRNSVLKEY 410
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A EE++L+ I DLL+LE +R+ LS+ P A WAAA +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 245
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED + K +
Sbjct: 246 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLL 304
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 305 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 364
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 365 PNRNSVLKEY 374
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/310 (46%), Positives = 200/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L R G P +WAA +
Sbjct: 150 DSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEM 209
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 210 SLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 269
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 270 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 329
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 330 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 388
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 389 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 448
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 449 PNRNGVLKEY 458
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 203/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DL +LE R L G PT +WA G
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQ 136
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 137 ALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTE 256
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE +++++L + S + P SL+ IG ++ + + I + + ET ED + K +
Sbjct: 257 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKSLL 315
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VLDTL+PRER V+R R+GLEDGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 316 REDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 375
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 376 PNRNSILKEY 385
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/386 (41%), Positives = 232/386 (60%), Gaps = 32/386 (8%)
Query: 137 QQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGS 196
++P N DLE + ++ S+ IA K A+ + S +
Sbjct: 24 EEPQNLKGDLESSKKD-------SSEKIA------------------KLASKLASTPRRT 58
Query: 197 TSR-RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R RK+P + D +R RLL A EE++L+ I DLL+LE +RE + +
Sbjct: 59 AERGRKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDE 113
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ A+W ++ R RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 114 LDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 173
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 174 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 233
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+ K L E GR P EE+AE +++++L + S + P SL+ IG ++ + + I
Sbjct: 234 KTTKILSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI- 292
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
+ + ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+R
Sbjct: 293 EADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 352
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIE+ A RKL++ R L +Y
Sbjct: 353 ERIRQIEAKALRKLRHPNRNSILKEY 378
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 207/343 (60%), Gaps = 38/343 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT---------- 261
D +R RLL A+EE++L+ I DLL LE LR R G + T
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRA----RMGAAGTDMHSDVADLL 116
Query: 262 -----------------------FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
+WA AAG+ + R R+ YG KDKM+ SN+RLV
Sbjct: 117 GDDDLLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLV 176
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQS
Sbjct: 177 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 236
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIRLP H+ E R+K+ K L E GR P EE+A +++++L + S + P SL
Sbjct: 237 RTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISL 296
Query: 419 DQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 478
+ IG ++ + + I + + ET ED + K ++EDLE VL+TL+PRER V+R R+GL+D
Sbjct: 297 ETPIGKEEDSRLGDFI-EADGETPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDD 355
Query: 479 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GRMKTL+EIG+L V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 356 GRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 398
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 137 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 196
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 197 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 256
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 257 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 316
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 317 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 375
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 376 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 435
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 436 PNRNGVLKEY 445
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 133 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 192
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 193 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 252
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 253 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 312
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 313 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 371
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 372 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 431
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 432 PNRNGVLKEY 441
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/333 (45%), Positives = 215/333 (64%), Gaps = 8/333 (2%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G SRR R V++ Y+ D +R RLL A+EE++L+ I DLL++E +R+ L
Sbjct: 86 GRASRR-RTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLC 144
Query: 254 ERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
+ G + + WA G+ R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 145 QELGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNR 204
Query: 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 368
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+
Sbjct: 205 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 264
Query: 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNL 428
E R+K+ K L E GR P EE+A+ +++++L + S + P SL+ IG ++
Sbjct: 265 ETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 324
Query: 429 KPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIG 488
+ + I + + ET ED + K ++EDLE VL TL+PRER V++ R+GL+DGRMKTL+EIG
Sbjct: 325 RLGDFI-ESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIG 383
Query: 489 ELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+L V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 384 QLFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 416
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 200/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 168 PLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 287
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLL 346
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 347 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 406
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 407 PNRNGVLKEY 416
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 209/340 (61%), Gaps = 10/340 (2%)
Query: 182 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A K A + S+K G V D +R RLL +EE++L+ I D
Sbjct: 139 AAKTAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIAD 189
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
LL+LE L G P +WA + + RRRL G K+KM+ SN+RLV+SI
Sbjct: 190 LLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSI 249
Query: 302 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361
AK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTI
Sbjct: 250 AKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTI 309
Query: 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQK 421
RLP H+ E R+K+ K L E GR P EE+AE+ +++++L + S + P SL+
Sbjct: 310 RLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETP 369
Query: 422 IGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRM 481
IG ++ + + I + + E E + K ++EDLE VL TL+PRER V+R R+GL+DGRM
Sbjct: 370 IGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRM 428
Query: 482 KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
KTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 429 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEY 468
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 161 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEM 220
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 221 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 280
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 281 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 340
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 341 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 399
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 400 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 459
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 460 PNRNGVLKEY 469
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 200/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 168 PLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 287
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLL 346
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 347 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 406
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 407 PNRNGVLKEY 416
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 140 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 199
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 200 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 259
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 260 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 319
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 320 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 378
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 379 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 438
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 439 PNRNGVLKEY 448
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 379
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 440 PNRNGVLKEY 449
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 379
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 440 PNRNGVLKEY 449
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 213/351 (60%), Gaps = 10/351 (2%)
Query: 171 QTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTAN 230
Q E T A + AA + S+K G V D +R RLL +
Sbjct: 59 QAEVAVTTTVAKDGKAAKLPSIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPD 109
Query: 231 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKM 290
EE++L+ I DLL LE L + E G P +WA + + RRRL G K+KM
Sbjct: 110 EEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGRRAKEKM 169
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 170 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 229
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+AE+ +++++L +
Sbjct: 230 TRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAK 289
Query: 411 SPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVV 470
S + P SL+ IG ++ + + I + + E + + K ++EDLE VL TL+PRER V+
Sbjct: 290 SAQLPISLETPIGKEEDSRLGDFI-EADIENPDQDVAKNLLREDLEGVLATLSPRERDVL 348
Query: 471 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A KL++ R L +Y
Sbjct: 349 RLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRHPNRNGVLKEY 399
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 148 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 207
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 208 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 267
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 268 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 327
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 328 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 386
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 387 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 446
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 447 PNRNGVLKEY 456
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 215/372 (57%), Gaps = 47/372 (12%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 256 CGGSPTFAQWA----------------AAAGVDQR------------------------- 274
PT QW +A D +
Sbjct: 104 LDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLES 163
Query: 275 -----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEK
Sbjct: 164 KAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 223
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P
Sbjct: 224 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKP 283
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED + K
Sbjct: 284 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKN 342
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL
Sbjct: 343 LLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 402
Query: 510 KNKKRTKHLMQY 521
++ R L +Y
Sbjct: 403 RHPNRNSILKEY 414
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE + G P+ +WAA +
Sbjct: 115 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEM 174
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 175 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 234
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 235 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 294
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + ++E E + K +
Sbjct: 295 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLL 353
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 354 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 413
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 414 PNRNGVLKEY 423
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 125 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 184
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 185 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 244
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 245 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 304
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 305 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 363
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 364 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 423
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 424 PNRNGVLKEY 433
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 130 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEM 189
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 190 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 249
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 250 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 309
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 310 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 368
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 369 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 428
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 429 PNRNGVLKEY 438
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/370 (41%), Positives = 214/370 (57%), Gaps = 45/370 (12%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 256 CGGSPTFAQWA----AAAGVDQR------------------------------------- 274
P QW ++QR
Sbjct: 104 LDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIISDLEKTWKQQSKA 163
Query: 275 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 164 YLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 223
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P
Sbjct: 224 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTE 283
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED + K +
Sbjct: 284 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 342
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 343 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 402
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 403 PNRNSILKEY 412
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/379 (44%), Positives = 235/379 (62%), Gaps = 27/379 (7%)
Query: 163 SIAVRSRRQT-ERKARRTR----AAEKAAANVMSVKSGSTSRRKR----PSVQEVDYSDP 213
S A R++R+T +R + +T+ AE +A + S + SRR R + +D
Sbjct: 212 STAPRAKRKTVKRVSTKTQLTGIVAEPGSAQEANEASAAESRRNRRIARKNADTKKQTDS 271
Query: 214 LR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGV 271
++ YL+ + S LLT EE++L+ IQDL+ L + E L E GG PT WA +
Sbjct: 272 MKTYLKDIGTVS-LLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNI 330
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++EL RRL G K+ MI +N+RLV+SIAK Y M+ QDL+QEGC GL+RGAEKFD
Sbjct: 331 TEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFD 390
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E R+ + +Q+ + GR P +
Sbjct: 391 FKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTH 450
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIAD---------PEAETA 442
EE+A+A ++++++ + + P SL Q + N N + + D PE ET
Sbjct: 451 EELADAMEMTVEKIKQIKKASLVPISLSQTVN-NSNGEDKRTVEDTLIDDYTEHPEGETG 509
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
+ LL KEDLE VL+TLNPRER V+R R+GL+DGR+KTL+EIG + V+RERIRQIE
Sbjct: 510 KVLL-----KEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIE 564
Query: 503 SSAFRKLKNKKRTKHLMQY 521
+ A RKL+ R L +Y
Sbjct: 565 AKALRKLRQPSRNGILREY 583
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/330 (45%), Positives = 206/330 (62%), Gaps = 15/330 (4%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG-LREVLSERCGGSPTF 262
S Q+VD YL+ S S LL ANEE+QL+ IQDL+ LE +E++++ G+
Sbjct: 373 SAQQVDSMKV--YLKEIGSVS-LLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPI 429
Query: 263 AQ----------WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
AQ WA G+ + EL RL G K+ MI +N+RLV+SIAK Y M+
Sbjct: 430 AQTHGDKVTKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSF 489
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
QDL+QEGC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E
Sbjct: 490 QDLIQEGCVGLIRGAEKFDFERGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIIS 549
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSE 432
R+ + ++ +NGR EE++ + ++ + + AP SL Q +G + + + E
Sbjct: 550 RMNKLEQKFIVQNGREATLEEISAMMEMPQVKITQIKKAAMAPVSLAQAVGADDDKRTVE 609
Query: 433 -VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM 491
+ D E E+ K +KEDLE VL+TLNPRER V+R R+GL+DGR+KTL+EIG +
Sbjct: 610 DTLVDNITEHPEESSGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVF 669
Query: 492 GVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIE+ A RKL+ R L Y
Sbjct: 670 SVTRERIRQIEAKALRKLRQPSRNGILRDY 699
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 149/342 (43%), Positives = 209/342 (61%), Gaps = 10/342 (2%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
R K A + S+K G V D +R RLL +EE++L+ I
Sbjct: 99 RKDAKGAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKI 149
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
DLL+LE G P +WAA + + RRRL G K+KM+ SN+RLV+
Sbjct: 150 ADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVV 209
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSR
Sbjct: 210 SIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSR 269
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLP H+ E R+K+ K L E GR P EE+AE+ +++++L + S + P SL+
Sbjct: 270 TIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLE 329
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
IG ++ + + I + + E E + K ++EDLE VL TL+PRER V+R R+GL+DG
Sbjct: 330 TPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDG 388
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 389 RMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEY 430
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 142/313 (45%), Positives = 204/313 (65%), Gaps = 4/313 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER--CG-GSPTFAQWAAA 268
D +R RLL A+EE++L+ I DLL+LE + L+E+ C WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
+ + + RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AE
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 199
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR
Sbjct: 200 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 259
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P+ EE+A +++++L + S + P SL+ IG ++ + + I + + ET +D + K
Sbjct: 260 PSEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPDDQVAK 318
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
++EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RK
Sbjct: 319 NLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 378
Query: 509 LKNKKRTKHLMQY 521
L++ R L +Y
Sbjct: 379 LRHPNRNSVLKEY 391
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 217/383 (56%), Gaps = 47/383 (12%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A A+ + + SRR+ P ++ D +R RLL A EE++L+ I DLL+
Sbjct: 33 AEADGKKTRKITASRRRDPGKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQ 92
Query: 245 LEGLREVLSERCGGSPTFAQWAA-------------AAGVDQRE---------------- 275
LE +RE L E PT QW A ++E
Sbjct: 93 LERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSSKEKEPKWSEVTDMLQKAEII 152
Query: 276 -----------------LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QE
Sbjct: 153 SDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQE 212
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 213 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 272
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPE 438
K L E R P EE+A +++++L + S + P SL+ IG ++ + + I + +
Sbjct: 273 KLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EAD 331
Query: 439 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERI 498
ET ED + K ++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERI
Sbjct: 332 GETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERI 391
Query: 499 RQIESSAFRKLKNKKRTKHLMQY 521
RQIE+ A RKL++ R L +Y
Sbjct: 392 RQIEAKALRKLRHPNRNSILKEY 414
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 214/372 (57%), Gaps = 47/372 (12%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ S ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 48 SASRRRDTSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 107
Query: 256 CGGSPTFAQWAAAAG------------------------------------------VDQ 273
P QWA ++Q
Sbjct: 108 LDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEPKWSEVTSLLQEKKTISNLEKIWELEQ 167
Query: 274 R----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEK
Sbjct: 168 KSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 227
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P
Sbjct: 228 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKP 287
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED + K
Sbjct: 288 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKN 346
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++EDLE VLDTL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL
Sbjct: 347 LLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 406
Query: 510 KNKKRTKHLMQY 521
++ R L +Y
Sbjct: 407 RHPNRNSVLKEY 418
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/315 (46%), Positives = 206/315 (65%), Gaps = 6/315 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---WA 266
D +R RLL A+EE++L+ I DLL+LE RE + +R G P WA
Sbjct: 89 DSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWA 148
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
+ E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R
Sbjct: 149 EEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 208
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ KQL E G
Sbjct: 209 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELG 268
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P EE+A +++++L + S + P SL+ IG ++ + + I + E ET E+ +
Sbjct: 269 RRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPEERV 327
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
K ++EDLE VL+TL PRER V++ R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A
Sbjct: 328 AKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 387
Query: 507 RKLKNKKRTKHLMQY 521
RKL++ R L +Y
Sbjct: 388 RKLRHPNRNSVLKEY 402
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 205/313 (65%), Gaps = 4/313 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA---QWAAA 268
D +R RLL A+EE++L+ I DLL+LE RE L+ P +WA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G+ E R+RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AE
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 200
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR
Sbjct: 201 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 260
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+A +++++L + S + P SL+ IG ++ + + I + E ET +D + K
Sbjct: 261 PTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPDDQVAK 319
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
++EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RK
Sbjct: 320 SLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 379
Query: 509 LKNKKRTKHLMQY 521
L++ R L +Y
Sbjct: 380 LRHPNRNSVLKEY 392
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 201/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G PT +WAA +
Sbjct: 128 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNM 187
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 188 PMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 247
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 248 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 307
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + ++E E + K +
Sbjct: 308 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLL 366
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 367 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 426
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 427 PNRNGVLKEY 436
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 200/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L + G P +WA +
Sbjct: 159 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDM 218
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 219 PPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 278
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 279 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 338
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 339 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 397
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 398 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 457
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 458 PNRNGVLKEY 467
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 200/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 146 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 205
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 206 PVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 265
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 266 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 325
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 326 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 384
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 385 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 444
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 445 PNRNGVLKEY 454
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 200/310 (64%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 169 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 228
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 229 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 288
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 289 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 348
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 349 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 407
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 408 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 467
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 468 PNRNGVLKEY 477
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 205/349 (58%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 207/349 (59%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 205/349 (58%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 205/349 (58%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 205/349 (58%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 207/349 (59%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 205/349 (58%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 205/349 (58%), Gaps = 40/349 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PRER V+R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 87 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDM 146
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 147 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 206
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 207 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 266
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 267 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 325
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 326 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 385
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 386 PNRNGVLKEY 395
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 205/315 (65%), Gaps = 1/315 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 133 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 192
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 193 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 252
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L E GR P
Sbjct: 253 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPT 312
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+AE +S+++L +VL S + SL++ + + + + + E+ E+ + K
Sbjct: 313 EEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSM 372
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++DLE V+++L+PRER VVR R+GL+DGR+KTL+EIG++ V+RER+RQIE+ A RKL+
Sbjct: 373 LRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 432
Query: 511 NKKRTKHLMQYAITS 525
R+ L Y +TS
Sbjct: 433 QPYRSSILRDYVLTS 447
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 382 PNRNGVLKEY 391
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 382 PNRNGVLKEY 391
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/316 (45%), Positives = 204/316 (64%), Gaps = 6/316 (1%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 265
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 206
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E
Sbjct: 207 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQEL 266
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR P EE+A +++++L + S + P SL+ IG ++ + + I + + ET ED
Sbjct: 267 GRKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDR 325
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+ K ++EDLE VL+TL RER V++ R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A
Sbjct: 326 VAKVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 385
Query: 506 FRKLKNKKRTKHLMQY 521
RKL++ R L +Y
Sbjct: 386 LRKLRHPNRNSVLKEY 401
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 86 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDM 145
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 146 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 205
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 206 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 265
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 266 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 324
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 325 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 384
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 385 PNRNGVLKEY 394
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 144 PLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 263
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 322
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 323 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 382
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 383 PNRNGVLKEY 392
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 135/315 (42%), Positives = 204/315 (64%), Gaps = 1/315 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 190 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 249
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L E GR P
Sbjct: 250 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPT 309
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+AE +S+++L +VL S + SL++ + + + + + E+ E+ + K
Sbjct: 310 EEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSM 369
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++DLE V+++L+PRER VVR R+GL+DGR+KTL+EIG++ V+RER+RQIE+ A RKL+
Sbjct: 370 LRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429
Query: 511 NKKRTKHLMQYAITS 525
R+ L Y + S
Sbjct: 430 QPYRSSILRDYVLAS 444
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 144 PLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 263
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 322
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 323 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 382
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 383 PNRNGVLKEY 392
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 1/310 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE+ +++++L + S + P SL+ IG ++ + + I + + E E + K +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+EDLE VL TL+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381
Query: 512 KKRTKHLMQY 521
R L +Y
Sbjct: 382 PNRNGVLKEY 391
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 204/315 (64%), Gaps = 1/315 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 190 SDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 249
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L E GR P
Sbjct: 250 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPT 309
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+AE +S+++L +VL S + SL++ + + + + + E+ E+ + K
Sbjct: 310 EEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSM 369
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++DLE V+++L+PRER VVR R+GL+DGR+KTL+EIG++ V+RER+RQIE+ A RKL+
Sbjct: 370 LRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429
Query: 511 NKKRTKHLMQYAITS 525
R+ L Y + +
Sbjct: 430 QPYRSSILRDYVLAT 444
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 207/320 (64%), Gaps = 3/320 (0%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
++Q+ D D +R+ RLL +EE+QL+ I LL E ++ L ++ PT +
Sbjct: 107 NIQKAD--DSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNS 164
Query: 264 QWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+W AA V D R+ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG G
Sbjct: 165 EWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLG 224
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L+R AEKFD+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L
Sbjct: 225 LIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLN 284
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETA 442
E GR P EE+A+ +S+++L VL S + SL++ + + + + + E+
Sbjct: 285 IEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESP 344
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
E+ + K +++DLE V+++L+PRER VVR R+GL+DGR+KTL+EIG++ V+RER+RQIE
Sbjct: 345 EEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIE 404
Query: 503 SSAFRKLKNKKRTKHLMQYA 522
+ A RKL+ R+ L Y
Sbjct: 405 AKAIRKLRQPYRSSILRDYV 424
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 213/357 (59%), Gaps = 1/357 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRSRR R++ RA + + S S +KR S Q D +DPLR + +
Sbjct: 176 VRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLS-QGFDPNDPLRLFLWGPETKQ 234
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L A IQDL+ LEG++ L + G PT +WA A G+ L+ +L+ G
Sbjct: 235 LLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNR 294
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+I +N+R+V+ IAK YQ G+ LQDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 295 SREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWW 354
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + K++ SRTIRLP ++ +V EA++ E P EE+A G+++ +L
Sbjct: 355 IRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKL 414
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P S+ Q + +QN E+ AD E E + + K+ M++ + +L+ L+ +
Sbjct: 415 EKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLK 474
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
ER+++R RFG+EDG+ K+L EIG + G+S+ER+RQ+ES A KLK + L YA
Sbjct: 475 ERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYA 531
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 218/367 (59%), Gaps = 6/367 (1%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR--PSVQE-VDYSDPLR 215
++ +SI ++ RR +RK ++ + + K + RR R ++E +D + LR
Sbjct: 190 KIVRSIRLKERRSKQRKVSNSKVLDD---EMYLTKKSNVQRRLRLEKKLKEGLDGNHALR 246
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
+ + +LL+ EE QL A IQDL KL+ + L G PT A+WA G+ R+
Sbjct: 247 LFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRD 306
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L++RL+ G KDK+I +N+RLV+ IAK YQG G++LQDL+QEG GL+R EKF G
Sbjct: 307 LQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAG 366
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
+FSTYA+WWI+Q +R++L S+TIRLP + ++ EA+K E HP EE+A
Sbjct: 367 CRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIA 426
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDL 455
+ G+++ RL +L S + P S+++ + + + E+ AD E + K+ M+ +
Sbjct: 427 KRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHV 486
Query: 456 EKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515
+L L P+ER+V+R RFG+EDG K+L EIG+++GV +ER+RQ+ES A KLK +
Sbjct: 487 RNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQCLVS 546
Query: 516 KHLMQYA 522
+ L Y
Sbjct: 547 QQLDAYV 553
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
Query: 155 LLEEQVSQSIAVRSRRQTERKARRTRAAEKAAAN---VMSVKSGSTS--RRKRPSVQEVD 209
L + + ++ VRS R ER++++ + + + ++ K + R ++ +E+D
Sbjct: 195 LADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELD 254
Query: 210 YSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
DPLR + +LLT +E QL + IQDLL+LE ++ L + G PT A+WA A
Sbjct: 255 QDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGA 314
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
G++ R L+ +L+ G ++K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EK
Sbjct: 315 GLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEK 374
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
F+ G +F YA WWI+QA+RK++ SRTIRLP + +V EA+K E HP
Sbjct: 375 FNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHP 434
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
EE+A G++++++ +L S + P S+ Q + +QN E+ ADP E + + K+
Sbjct: 435 TKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQ 494
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
M+ + VL L+P+ER+++R R+G EDG K+L EIG++ G+S+ER+RQ+E A KL
Sbjct: 495 LMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKL 554
Query: 510 K 510
K
Sbjct: 555 K 555
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 222/380 (58%), Gaps = 5/380 (1%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 202
S LEPT LEE + VRS R+ ER+++ R + S +K+
Sbjct: 170 STGLEPTDLSNFSLEEVKT----VRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKK 225
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
+ + D DPLR + +LLTA EE +L +QDL+ LE ++E + G PT
Sbjct: 226 IN-EGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTL 284
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+WA A G+ ++ +L+ G ++K+I +N+R+V+ IAK YQG G++LQDL+QEG G
Sbjct: 285 VEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMG 344
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKF G +F+TYA+WWI+Q VRK++ SRTIRLP ++ +V EA++
Sbjct: 345 LMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYI 404
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETA 442
E +P EE+A+ G++ RL +L + P S+ Q + +Q E+ AD E E
Sbjct: 405 MEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIP 464
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
E + K+ M++ + +L+ LNPRER+++R R+G+EDG+ K+L EIG + G+S+ER+RQ+E
Sbjct: 465 ELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLE 524
Query: 503 SSAFRKLKNKKRTKHLMQYA 522
S A KLK + L YA
Sbjct: 525 SRALYKLKQCLASHGLEAYA 544
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 214/357 (59%), Gaps = 1/357 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 246
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 366
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++RKS+ SRTIRLP ++ +V EARK E P+ EE+A G+S ++L
Sbjct: 367 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 426
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + + P S+ Q I +Q+ E+ D ET + K+ M+ + +L+ L+P+
Sbjct: 427 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 486
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
ER++++ RFG++ G+ ++L EIGE+ G+S+ER+RQ+ES A +LK + L YA
Sbjct: 487 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYA 543
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 215/357 (60%), Gaps = 1/357 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + + +K+ Q VD D L+ + +
Sbjct: 187 VRSKRQLERRAKNRRAPKSNDVDNEGYVPQKINAKKK-FKQGVDTDDALQLFLWGPETKQ 245
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ +L+ ++ G
Sbjct: 246 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRS 305
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 306 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 365
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++RKS+ SRTIRLP ++ +V EARK E P+ E++A G+S ++L
Sbjct: 366 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTEKL 425
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + + P S+ Q I +Q+ E+ D ET + K+ M+ + +L+ L+P+
Sbjct: 426 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQMMRNHVRNLLNVLSPK 485
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
ER++++ RFG++ G+ ++L EIGE+ G+S+ER+RQ+ES A +LK + L YA
Sbjct: 486 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQHMNSHGLHAYA 542
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 214/357 (59%), Gaps = 1/357 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 128 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 186
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 187 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 246
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 247 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 306
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++RKS+ SRTIRLP ++ +V EARK E P+ EE+A G+S ++L
Sbjct: 307 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 366
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + + P S+ Q I +Q+ E+ D ET + K+ M+ + +L+ L+P+
Sbjct: 367 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 426
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
ER++++ RFG++ G+ ++L EIGE+ G+S+ER+RQ+ES A +LK + L YA
Sbjct: 427 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYA 483
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 208/342 (60%)
Query: 169 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 228
RR +RK +++ + + R ++ +E+D +DPL + + +LLT
Sbjct: 217 RRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLT 276
Query: 229 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+E QL + IQDLL+LE ++ L + G PT A+WA G++ R L +L G ++
Sbjct: 277 LEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSRE 336
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EKF+ G +F YA WWI+Q
Sbjct: 337 KLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQ 396
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+RK++ SRTIRLP + +V EA+K E HP EE+A G++++++ +
Sbjct: 397 AIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKL 456
Query: 409 LLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 468
L S + P S+ Q + +QN E+ ADP E + + K+ M++ + VL L+P+ER+
Sbjct: 457 LFSARIPISMQQTVWADQNTTFQEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERR 516
Query: 469 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++R R+G EDG K+L EIG++ G+S+ER+RQ+E A KLK
Sbjct: 517 IIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLK 558
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 213/349 (61%), Gaps = 11/349 (3%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 204 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 257
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 258 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 317
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+I +N+R+V+ IAK YQG G+NLQDL+QEG GL+ EKF + G +F++YA
Sbjct: 318 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYA 377
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH-PNNEEVAEATGLS 401
+WWI+QAVRK++ SRTIRLP +M +VKEA K+L+ + G H P EE+AE G++
Sbjct: 378 YWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEA-KRLFIQEGHHDPTKEEIAERVGIT 436
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
+++L +LL + P S+ Q + +Q+ EV AD E + + K+ M++ + +L
Sbjct: 437 IEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHV 496
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
L P+ER+++R RFG+ DG +TL EIG + G S+ER+RQ+E A KLK
Sbjct: 497 LTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLK 545
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 213/349 (61%), Gaps = 11/349 (3%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 215 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 268
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 269 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 328
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+I +N+R+V+ IAK YQG G+NLQDL+QEG GL+ EKF + G +F++YA
Sbjct: 329 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYA 388
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH-PNNEEVAEATGLS 401
+WWI+QAVRK++ SRTIRLP +M +VKEA K+L+ + G H P EE+AE G++
Sbjct: 389 YWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEA-KRLFIQEGHHDPTKEEIAERVGIT 447
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
+++L +LL + P S+ Q + +Q+ EV AD E + + K+ M++ + +L
Sbjct: 448 IEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHV 507
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
L P+ER+++R RFG+ DG +TL EIG + G S+ER+RQ+E A KLK
Sbjct: 508 LTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLK 556
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 219/363 (60%), Gaps = 7/363 (1%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE-----VDYSDPLRYLRAT 220
VRS R ER+A+ + + + + G + ++ VQ+ ++ SDPL +
Sbjct: 202 VRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQS 261
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
S +LLT+ +E QL IQ+LL+LE L+ L + G PT A+WA AG++ R+++ +L
Sbjct: 262 PESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQL 321
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G ++K+I +N+RLV IAK+YQG G++++DL+QEG GL++ +KF G +F++
Sbjct: 322 RCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFAS 381
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR-HPNNEEVAEATG 399
YA+WWIKQA+RK++ + SRTIRLP + +V EA+K LY E G +P EE+A G
Sbjct: 382 YAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKK-LYKEEGNLNPTKEELARRVG 440
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVL 459
+S ++ +L + P S+ +G + E+ AD E+ + K+ M+ + VL
Sbjct: 441 ISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVAKQLMRRHVLNVL 500
Query: 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLM 519
+ L P+ER+++R RFG EDG K+L EIGE+ G+SRER+RQ+ES A KLK + L
Sbjct: 501 NILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALYKLKKYLVGQGLD 560
Query: 520 QYA 522
YA
Sbjct: 561 AYA 563
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 217/360 (60%), Gaps = 7/360 (1%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS+RQ ER+A+ RA + +N M + G ++ K+ Q D D L+
Sbjct: 188 VRSKRQLERRAKNRRAPK---SNNMDSE-GYVPQKINAKKKMKQGFDTDDALQLFLWGPE 243
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L A IQ L+KLE ++ L + G PT +WA A G+ L+ ++
Sbjct: 244 TKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHR 303
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G ++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA
Sbjct: 304 GRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYA 363
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
+WWI+Q++RKS+ SRTIRLP ++ +V EARK + P+ E++A G+S
Sbjct: 364 YWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGNYRPSKEQLASHVGVST 423
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
++L +L + + P S+ Q I +Q+ EV D ET + K+ M+ + +L+ L
Sbjct: 424 EKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGIETPSMSVGKQLMRNHVRNLLNVL 483
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+P+E+++++ RFG++ G+ ++L EIGE+ G+S+ER+RQ+ES A +LK + L YA
Sbjct: 484 SPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLNAYA 543
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +A
Sbjct: 333 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKA 392
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADP 437
R + +G P NE VA G+++++L + + RS+ ++ + + E+ DP
Sbjct: 393 RMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSMQDRVWSDDGVTYQEITEDP 451
Query: 438 EAETAEDLLIKKFMKEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
E E + + M++ + L L+PRE++++ RFG+ DG+ KTL IG++ G+S+E
Sbjct: 452 NIEGPEVSVDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKE 511
Query: 497 RIRQIESSAFRKLKN 511
RIRQ+++ A KL+N
Sbjct: 512 RIRQVQNKALDKLRN 526
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 166 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 213
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 214 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 273
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 274 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 333
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +A
Sbjct: 334 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKA 393
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADP 437
R + +G P NE VA G+++++L + + RS+ ++ + + E+ DP
Sbjct: 394 RMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSMQDRVWSDDGVTYQEITEDP 452
Query: 438 EAETAEDLLIKKFMKEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
E E + + M++ + L L+PRE++++ RFG+ DG+ KTL IG++ G+S+E
Sbjct: 453 NIEGPEVSVDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKE 512
Query: 497 RIRQIESSAFRKLKN 511
RIRQ+++ A KL+N
Sbjct: 513 RIRQVQNKALDKLRN 527
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 168/236 (71%), Gaps = 1/236 (0%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WW
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P EE+AE +++++L
Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ S + P SL+ IG ++ + + I + + ET ED + K ++EDLE VLDTL+PR
Sbjct: 309 RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPR 367
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER V+R R+GL+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L +Y
Sbjct: 368 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 423
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/303 (41%), Positives = 198/303 (65%), Gaps = 3/303 (0%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R YLR LLT EE+ + +Q + LE L+E L+E G PT AQWA AA
Sbjct: 9 DPVRAYLREIGRVP-LLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAK 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ Q+ELR + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 MTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL E GR
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
E+AE L+ +++ L + P SLD ++G NQ+ + +++ D ++ ED
Sbjct: 188 IAELAEELELTPRQVREYLERARQPLSLDLRVGDNQDTELGDLLEDT-GQSPEDYATHSS 246
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++ DL+++++ L P++++V+ RFGL DG+ TL +IG ++ +SRER+RQIE A KL+
Sbjct: 247 LQLDLDRLMEELTPQQKEVLALRFGLSDGKPLTLAKIGSILNISRERVRQIEREALAKLR 306
Query: 511 NKK 513
+K
Sbjct: 307 KRK 309
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 193/296 (65%), Gaps = 3/296 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L+ L + L + PT +WAAA G+ + EL + G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++Q ++GR P E+A+ATG ++K++
Sbjct: 123 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQV 182
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD K+G NQ+ + +++ D + +T +D +K DL++++ L P+
Sbjct: 183 REYLDRSRQPLSLDLKVGDNQDTQLGDLLED-DGQTPDDYATASSLKSDLKRIMADLTPQ 241
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
++QV+ RFGLEDG+ TL +IG ++ +SRER+RQIE A KL +KR + +Y
Sbjct: 242 QQQVIALRFGLEDGKNMTLAKIGAMLDISRERVRQIEREALTKL--RKRQSDMREY 295
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 193/303 (63%), Gaps = 1/303 (0%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLT EE+ S +Q ++ LE L+ L+E PT +WA AA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ Q+EL++R++ G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL +NGR
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKNGRAAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
E+AE L+ K++ L + P SLD ++G N + + E++ D T +D
Sbjct: 188 IPELAEELDLTTKQVRDYLEKSRQPLSLDLRVGDNNDTELIELLED-HGTTPDDFATSAA 246
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+K DL +++ L ++++V+ RFGL DG+ TL +IGE + +SRER+RQIE A KL+
Sbjct: 247 LKRDLHRMISDLTAQQQEVLTLRFGLNDGQPHTLAKIGEHLSISRERVRQIEREALSKLR 306
Query: 511 NKK 513
+K
Sbjct: 307 KRK 309
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 199/314 (63%), Gaps = 1/314 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ +LL EE+QL+ I LL+ E ++ L E+ G PT +W+AA +
Sbjct: 84 DSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKI 143
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ + L K++MI +N+RLV+SIAK Y GM+LQDLVQEG GL+R EKF
Sbjct: 144 SDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKF 203
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WWIKQ+V ++++D SRTIRLP H+ + +K+ + L E GR P
Sbjct: 204 DSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPT 263
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A +++ +L +VL S + SL++ I + + + + E+ ++ + K
Sbjct: 264 EEEIACKMDVTVDKLRSVLQSAQPTLSLEKPIKNDGDTAQLSDFIEADQESPDEHVEKSM 323
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++DL V+++L+ RER V+R R+GL+DG+++TL+EIG++ V+RER+RQIE+ A RKL+
Sbjct: 324 LRDDLRDVINSLSLRERDVIRMRYGLDDGKIRTLEEIGQIFSVTRERVRQIEAKAIRKLR 383
Query: 511 NKKRTKHLMQYAIT 524
R+ ++ T
Sbjct: 384 QPYRSSIFKDHSYT 397
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 217/375 (57%), Gaps = 14/375 (3%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + + + R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +A
Sbjct: 333 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKA 392
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADP 437
R + +G P NE VA G+++++L + + RS+ ++ + + E+ DP
Sbjct: 393 RMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSMQDRVWSDDGVTYQEITEDP 451
Query: 438 EAETAEDLLIKKFMKEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
E E + + M++ + L L+PRE++++ RFG+ DG+ KTL IG++ G+S+E
Sbjct: 452 NIEGPEVSVDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKE 511
Query: 497 RIRQIESSAFRKLKN 511
RIRQ+++ A KL+N
Sbjct: 512 RIRQVQNKALDKLRN 526
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 213/358 (59%), Gaps = 3/358 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAA-NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 224
VRS R +R++++ + + + +S G SRRK + ++ D +DPLR +
Sbjct: 203 VRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRK--TSEKFDPNDPLRLFLWGPETK 260
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
+LLTA EE +L IQDL+ L+ ++ L + PT +WA A G+ + L+ +L+
Sbjct: 261 KLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQ 320
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
++K+I +N+R+V+ IAK YQG G++L DL+Q G GL++ EKF G +F +YA+W
Sbjct: 321 TSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYW 380
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+ ++ K++ SRTIRLP ++ +V EA+ P+ EE+A G++++R
Sbjct: 381 WIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVER 440
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
++ + PRSL Q + +Q E+ AD E +T + + ++ M+ + +L L+P
Sbjct: 441 FDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP 500
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ER+++R RFG+EDGR KTL EIG + G+S+ER+RQ+E+ A KLK ++ L YA
Sbjct: 501 KERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYA 558
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 195/303 (64%), Gaps = 1/303 (0%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ QREL+++L G K KM+ +N+RLV+S+AK Y M+L DL+QEG G+ RG EKF
Sbjct: 68 LSQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL NGR +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQANGRSAS 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
E+A+ GL+ K++ L + P SLD ++G N + + E++ D + T +D
Sbjct: 188 IPELADELGLTTKQVRDYLEKSRQPLSLDLRVGDNNDTELIELLED-DGLTPDDYATHAA 246
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+K DL ++L+ L ++++V+ RFGL DG TL +IGE + +SRER+RQIE A KL+
Sbjct: 247 LKRDLARMLNDLTAQQQEVLTLRFGLRDGTPHTLAKIGEHLSISRERVRQIEREALAKLR 306
Query: 511 NKK 513
+K
Sbjct: 307 KRK 309
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 213/369 (57%), Gaps = 7/369 (1%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 201
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 194 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 248
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
+ + ++ +P + ++ LTA EE L + IQ L+K+E L +CG PT
Sbjct: 249 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPT 308
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+GC
Sbjct: 309 LAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCS 368
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +AR +
Sbjct: 369 GLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMEC 428
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 441
E G P N VA G+++++L + + PRS+ + ++ + E+ DP E
Sbjct: 429 IME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEP 487
Query: 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501
+ + + M++ + L L+PRE++++ RFG+ DG KTL IG++ G+S+ERIRQ+
Sbjct: 488 PDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQL 547
Query: 502 ESSAFRKLK 510
++ A KLK
Sbjct: 548 QNRALEKLK 556
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 195/304 (64%), Gaps = 2/304 (0%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ QR+L+++L G K KM+ +N+RLV+S+AK Y M+L DL+QEG G+ RG EKF
Sbjct: 68 LSQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ +++++QSRTIRLP H+ E ++K+A++QL NGR +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSAS 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
E+A+ GL+ K++ L + P SLD ++G N + + E+ + + E +D
Sbjct: 188 IPELADELGLTTKQVRDYLEKSRQPLSLDLRVGDNNDTELIEL--EDDGELPDDYATHAA 245
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+K DL ++L+ L ++++V+ RFGL DG TL +IGE + +SRER+RQIE + KL+
Sbjct: 246 LKRDLARMLNDLTAQQQEVLTLRFGLRDGTPHTLAKIGEHLNISRERVRQIEHGSLAKLR 305
Query: 511 NKKR 514
+KR
Sbjct: 306 KQKR 309
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 199/320 (62%), Gaps = 3/320 (0%)
Query: 206 QEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 265
++V+ D +R LL+ +E+ +Q ++ L +E L+E PT +W
Sbjct: 12 KKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEW 71
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A AA EL++ ++ G K KMI +N+RLV++IAK YQ M DL+QEG GL R
Sbjct: 72 AQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
G EKFD +KGFKFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L +
Sbjct: 132 GVEKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKL 191
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR PN E+A A L ++ + P SLD K+G NQ+ + SE++ D E + +
Sbjct: 192 GRSPNQSEIANALDLEPSQIREYFSIARQPISLDVKVGDNQDTELSELLED-EGLSPDKY 250
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+ ++ M++DL K+LD L ++++VVR RFGL+DG+ +L +IG+ MG+SRER+RQ+E A
Sbjct: 251 ITQELMRQDLHKLLDELTTQQQEVVRLRFGLDDGKELSLAKIGQRMGISRERVRQLEQQA 310
Query: 506 FRKLKNKKRTKHLMQYAITS 525
L+ K+ + + +Y +T
Sbjct: 311 LAHLRKKRGS--VKEYIVTG 328
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 194/288 (67%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +QDL+KL+ +R+ L+E+ P A+W+ AA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQLSEAELQKALHEGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+ ++QL + GR E+A A L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATALDLTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E+I DP +E+ E+ ++ ++ DLE+++ L +
Sbjct: 203 REYLERARQPLSLDVRVGDNQDTELGELIEDP-SESPENFTLQASLRGDLERLMADLTDQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++QV+ RFGL+DG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QQQVLHLRFGLDDGQPLTLAKIGDRLSISRERVRQIEREALSKLRKRK 309
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 197/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ K++ L + P SLD K+G NQ+ + E++ DP + ED
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDP-GLSPEDYTAYS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|406980685|gb|EKE02255.1| hypothetical protein ACD_20C00407G0008 [uncultured bacterium]
Length = 364
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 195/312 (62%), Gaps = 39/312 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
DP+R YLR +LLTA+EE++L+ R+++S GG
Sbjct: 88 DDPVRMYLREI-GRIQLLTADEEIELA------------RKIVS---GGKE--------- 122
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R AEK
Sbjct: 123 -------------GQIAKRKLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIRAAEK 169
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +G+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++K+ ++L + R P
Sbjct: 170 FDHERGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLKKITRKLAQDLSRKP 229
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
EE+AEA +++ +L ++ + P SL+ IG ++ + + I D EA+ + +
Sbjct: 230 TEEEIAEAMAITINKLREIIKVAQEPLSLETPIGKEEDSRLGDFIEDKEADAPVMTVAHE 289
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++EDL +VL +L+PRER V+R RFG++DGR +TL+E+G+L GV+RERIRQIE+ A RKL
Sbjct: 290 LLREDLAEVLSSLSPRERDVLRLRFGMDDGRQRTLEEVGQLFGVTRERIRQIEAKALRKL 349
Query: 510 KNKKRTKHLMQY 521
++ R++ L +Y
Sbjct: 350 RHPNRSRRLKEY 361
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 144/379 (37%), Positives = 217/379 (57%), Gaps = 33/379 (8%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 202
S ++EP E + L++ +Q I + + + + K + A E+ N +SV G
Sbjct: 42 SFEMEPEQFE-EFLDQIEAQGIEMDRKEEADAK---SDAEEQFDLNDLSVPPG------- 90
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
V +DP+R LLT EE+ L+ IQ+ ++ E L+E +P
Sbjct: 91 -----VRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEA---ELAETNEMTPK- 141
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+D +R G K K+ +N+RLV+SIAK Y G GM DL+QEG G
Sbjct: 142 --------IDAAIIR-----GENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMG 188
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL
Sbjct: 189 LIKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLL 248
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETA 442
+ GR P+ EE+ E L+ +++ +L + P SL+ IG + + I D EA++
Sbjct: 249 QDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSP 308
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
D + +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE
Sbjct: 309 SDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIE 368
Query: 503 SSAFRKLKNKKRTKHLMQY 521
+ A RKL++ R+K L +
Sbjct: 369 AKALRKLRHPSRSKRLKDF 387
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 198/306 (64%), Gaps = 3/306 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 185 AATIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTA 243
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A
Sbjct: 244 HSSLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIA 303
Query: 508 KLKNKK 513
KL+ +K
Sbjct: 304 KLRKRK 309
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 185/314 (58%), Gaps = 17/314 (5%)
Query: 212 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
DP+R LLTA+EE M++ AG + KLE + +
Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFED-------------EKIE 198
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ +QR L R G+ K ++I++N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 199 LSRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 258
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 259 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGR 318
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ G+S R+ + + P SL+ IG ++ + + I D A D
Sbjct: 319 DPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAAS 378
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++E LE+VLD L RER+V+++RFGLEDGR +TL+E+G GV+RERIRQIES
Sbjct: 379 DSMLREQLEQVLDGLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLA 438
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 439 KLRHPSRSSRLKDY 452
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 198/306 (64%), Gaps = 3/306 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 185 AATIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTA 243
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A
Sbjct: 244 YSSLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIA 303
Query: 508 KLKNKK 513
KL+ +K
Sbjct: 304 KLRKRK 309
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 186/314 (59%), Gaps = 17/314 (5%)
Query: 212 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
DP+R LLTA+EE M++ AG KLE + L E
Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRA--------- 202
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+QR L R + G+ K ++I++N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 203 ----EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 258
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 259 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGR 318
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ G+S R+ + + P SL+ IG ++ + + I D A D
Sbjct: 319 DPTPEEIGSEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAVAPPDAAS 378
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++E LE+VLD+L RER+V+++RFGLEDG +TL+E+G+ GV+RERIRQIES
Sbjct: 379 DSMLREQLEQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGKEFGVTRERIRQIESKTLA 438
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 439 KLRHPSRSGRLKDY 452
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 196/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTAYS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 187/300 (62%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLT EE QL + IQ+L +LE ++ L + G PT A+WA G+ L+ +L
Sbjct: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
+WWI+Q +R++L SRTIRLP ++ ++ EA+K E HP EE+A G+++
Sbjct: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
+L +L + + P S+ Q + +Q+ E+ AD ET + + K+ M+ +L TL
Sbjct: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
NPRER+++R RFG+EDG K+L EIG + G+S+ER+RQ+ES A KLK + L YA
Sbjct: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 201/314 (64%), Gaps = 5/314 (1%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+ +DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NLTDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 185 AATIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTA 243
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A
Sbjct: 244 YSSLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIA 303
Query: 508 KLKNKKRTKHLMQY 521
KL +KR ++ +Y
Sbjct: 304 KL--RKRRANIREY 315
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 7/310 (2%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV--DQ 273
YLR +LL EE++LS + L+ LE + E G SPT ++WA G D
Sbjct: 281 YLREI-GRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDV 339
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+LR + G K++M+T+N+RLV+SIAK Y G+ LQDL+QEG GL+RG EKFDA
Sbjct: 340 EKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAE 399
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+GF+FSTYA WWI+Q++ +++SD SR+IRLP H+ + +++ K L E GR P+ EE
Sbjct: 400 RGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEE 459
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKI--GINQNLKPSEVIADPEAETAEDLLIKKFM 451
+ E+ G+ + V+ + SL+ + G + + +IA PE E AE+ + +
Sbjct: 460 ICESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIA-PE-ERAEENCSRDTL 517
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+E +EKVL L+ RER+V+R RFGL DGR +TL+E+G V+RERIRQIES A +KL+
Sbjct: 518 RESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRT 577
Query: 512 KKRTKHLMQY 521
L +Y
Sbjct: 578 PAENNFLDEY 587
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 191/288 (66%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L ++ +RE LS+R G P +WA AA + + EL+ +N G L
Sbjct: 23 LLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNRGEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATIGELAQELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D A + ED + ++ DL++++ L P+
Sbjct: 203 REYLERSRQPLSLDVRVGDNQDTELGELLEDT-AASPEDFTSQASLRADLDRLMADLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+RQV+ RFGLEDG+ TL ++G+++ +SRER+RQIE A KL+ +K
Sbjct: 262 QRQVLSLRFGLEDGQPLTLAKVGDMLNISRERVRQIEREALSKLRKRK 309
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 194/288 (67%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+KL+ +R+ L+E+ P A+W+AAA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+ ++QL + GR E+A + L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATSLDLTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E+I DP +E+ E+ ++ ++ DLE+++ L +
Sbjct: 203 REYLERARQPLSLDVRVGDNQDTELGELIEDP-SESPENFTLQASLRGDLERLMADLTDQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++QV+ RFGL+DG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QQQVLHLRFGLDDGQPLTLAKIGDRLSISRERVRQIEREALSKLRKRK 309
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 196/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTAHS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 193/302 (63%), Gaps = 1/302 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLT EE+ + +Q L+ LE LRE + E G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+RE R + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATV 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
E+AE L+ K++ L + P SLD ++G NQ+ + +++ D + ++ ED +
Sbjct: 189 TELAEELDLTPKQVREYLERARQPLSLDLRVGDNQDTELGDLLED-DGQSPEDFATHSSL 247
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+ DLE++++ L ++++V+ RFGL DG+ TL +IG + +SRER+RQIE A KL+
Sbjct: 248 QFDLERLMEDLTSQQKEVIALRFGLLDGQPLTLAKIGSRLNISRERVRQIEREALSKLRK 307
Query: 512 KK 513
+K
Sbjct: 308 RK 309
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 196/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTAYS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 196/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTAYS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 189/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL+ + P SLD ++G NQ+ + +++ D E+ +A++ + ++ +++DL+ ++ L P+
Sbjct: 217 RDYLLASRHPVSLDLRVGDNQDTELQDLLED-ESASADNYVTQQLLRQDLKDLMADLTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ R+GL DG+ +L ++G M +SRER+RQ+E+ A L+ +K
Sbjct: 276 QREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRRRK 323
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 196/311 (63%), Gaps = 4/311 (1%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYL+ LLT +E+ L +Q L+KLE +R+ L+E PT A+WA A +
Sbjct: 13 RYLKGIGRFP-LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPE 71
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L++ + G KDKM+ SN+RLV+SIAK Y+G+ +++ DL+QEG GL RG EKFD K
Sbjct: 72 ALKKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLK 131
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
G++FSTYA+WWI+QA+ ++++D RTIRLP H+ E ++++A++++ E GR EV
Sbjct: 132 GYRFSTYAYWWIRQAITRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATVSEV 191
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
AE L +++ + + P SL+ +IG QN + ++ + ++++ E+ + +K D
Sbjct: 192 AEKVSLPAEKVRELQRQSRLPLSLNMRIGSEQNTELGALL-ESDSQSPEEYATQNLLKRD 250
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+ ++L L R++ V+ RFGL+DG+ KTL +IG + +SRER+RQIE A R L++ R
Sbjct: 251 IGQLLARLTERQKDVISMRFGLDDGKKKTLAQIGHDLDISRERVRQIERKALRTLRHTGR 310
Query: 515 TKHLMQYAITS 525
L +Y + S
Sbjct: 311 --GLKEYTMAS 319
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 197/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + + ED
Sbjct: 187 TIAELAEELDLTPKQVRDYLERARQPLSLDLKVGDNQDTELGELLED-KGLSPEDYTAYS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/299 (41%), Positives = 188/299 (62%), Gaps = 4/299 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV--DQRELRRRLNYG 283
LL EE++LS + L+ LE ++ E+ G SPT +WA G D LR+ + G
Sbjct: 420 LLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGEDVEALRKHIRDG 479
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
K++M+T+N+RLV+SIAK Y G+ LQDL+QEG GL+RG EKFDA +GF+FSTYA
Sbjct: 480 RSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAGRGFRFSTYAT 539
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+Q++ +++SD SR+IRLP H+ + +++ K L+++ GR P +E+ E+ G+ +
Sbjct: 540 WWIRQSITRAISDSSRSIRLPVHVHDTISMIRKHTKALHTQLGRPPREDEICESVGIDIA 599
Query: 404 RLHAVLLSPKAPRSLDQKI-GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
+ ++ + SL+ + G + E + PE E +ED + + +++ +EKVL L
Sbjct: 600 KYRLIMECSQNIVSLETPMHGTDDIHNLGESLISPE-ERSEDTVSRDTLRDSIEKVLRCL 658
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RER+V+R RFGL DGR +TL+E+G V+RERIRQIES A +KL+ L +Y
Sbjct: 659 TAREREVIRMRFGLADGRPRTLEEVGVKFNVTRERIRQIESKALKKLRIPAENNFLDEY 717
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 193/304 (63%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD +R YLR S LLT +E+QL +Q +++LE +++ L++ CG P+ W AA
Sbjct: 21 SDNVRLYLR-DIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAA 79
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
++ EL+ L G K KMIT+N+RLV++IAK Y+ + L DL+QEG GL R AEK
Sbjct: 80 DLEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEK 139
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
+D +GF+FSTYA+WWI+Q + +++++Q RTIRLP H+ EA ++K +++L GR P
Sbjct: 140 YDPQRGFRFSTYAYWWIRQGITRAIAEQGRTIRLPIHLTEALNKIKRTQRELSQSLGRSP 199
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
EVA+A L+ +++ L S+D KIG +Q+ + I P++ + E + K
Sbjct: 200 TTAEVAQALSLTPEKVQQYLHCAHHTLSIDLKIGDDQDSSIVDFIEAPDS-SPEKFVSDK 258
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
+ E L+ +L TL P++R+V+ R+GL DGR TL +G M +SRER+RQ++++A +L
Sbjct: 259 TLSESLQMLLATLTPQQREVLTLRYGLIDGRELTLAAVGRRMDISRERVRQLQNAALSQL 318
Query: 510 KNKK 513
+ +K
Sbjct: 319 QKRK 322
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 200/312 (64%), Gaps = 5/312 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRSYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ K++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDT-GLSPEDYTAYS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL++G+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKL 305
Query: 510 KNKKRTKHLMQY 521
+KR ++ +Y
Sbjct: 306 --RKRRANIREY 315
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 190/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K+ +++L+ + GR+ E+A+A L ++
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATPTEIAKALDLEPSQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL+ + P SLD ++G NQ+ + +++ D E+ +A++ + ++ +++DL+ ++ L P+
Sbjct: 217 RDYLLASRHPVSLDLRVGDNQDTELQDLLED-ESASADNYVTQQLLRQDLKDLMADLTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ R+GL DG+ +L ++G M +SRER+RQ+E+ A L+ +K
Sbjct: 276 QREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRRRK 323
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/317 (43%), Positives = 190/317 (59%), Gaps = 6/317 (1%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD S LL+A EE++LS I+DL++LE +++ L+ R G P +WA AAG
Sbjct: 102 SDSFNSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAG 161
Query: 271 VDQRE-LRRRLNYGILCKDKMITSNIRLVISIAKNYQGA-GMNLQDLVQEGCRGLVRGAE 328
+ R+ G + +++ SN+R V+SIAK Y M LQDL+QEG GL++ AE
Sbjct: 162 TQPGPAFQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAE 221
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
+FD KGFKF TYA WWI+QA+ +SL DQ RTIRLP H+ ++ Y +K+ R+QL S GR
Sbjct: 222 RFDLDKGFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRI 281
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGI-NQNLKPSEVIAD---PEAETAED 444
P EE+A+ + + RL + + P SL+ I + K + D E ++
Sbjct: 282 PTPEELADELNIPVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFIESECLQPDE 341
Query: 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504
L + ++EDLE VL TL RER ++R R+GL DG KTL EIGE++G++RERIRQIE S
Sbjct: 342 QLERTMLREDLENVLATLKARERDIIRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQS 401
Query: 505 AFRKLKNKKRTKHLMQY 521
A RKLK R L Y
Sbjct: 402 AMRKLKAPYRKAILCDY 418
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 197/318 (61%), Gaps = 3/318 (0%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V+ D +R LL+ +E+ +Q ++ L ++E L + T +WA
Sbjct: 18 VNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQ 77
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A E+++ ++ G K KMI +N+RLV++IAK YQ M DL+QEG GL RG
Sbjct: 78 KADKTPNEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGV 137
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR
Sbjct: 138 EKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGR 197
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P+ E+AEA L ++ + P SLD K+G NQ+ + SE++ D E + ++ +
Sbjct: 198 SPSPNEIAEALQLEPAQIREYFSIARQPISLDVKVGDNQDTELSELLED-EGVSPDNYIT 256
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++ M++DL+K+L L P+++QVVR RFGLEDG+ +L +IG+ M +SRER+RQ+E A
Sbjct: 257 QELMRQDLQKLLGELTPQQQQVVRLRFGLEDGKELSLAKIGQRMNISRERVRQLEQQALA 316
Query: 508 KLKNKKRTKHLMQYAITS 525
L+ K+ + + +Y + S
Sbjct: 317 HLRKKRSS--VKEYIVAS 332
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 189/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G PT +WAA+A V+ EL + G +
Sbjct: 37 LLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAEGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ +++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAIELADELELTPRQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ D A T ED +I+ + D+E+++ L P+
Sbjct: 217 RECLEKARLPLSLDLRLGDNYDTELGEMLEDTGA-TPEDFVIQSSLSSDIERLMKELTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V++ RFGL DG+ TL +IGE++ +SRER+RQIE A KL+ K
Sbjct: 276 QKEVIKLRFGLIDGQALTLSKIGEILNISRERVRQIEREALTKLRKSK 323
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 201/335 (60%), Gaps = 17/335 (5%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S +T+RR RP+ +++D P +R + LLTA +E++L+ I+ L
Sbjct: 1 MTSPTTTRRARPTAEDLDAQSPSADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAAH 60
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
+ E +R S +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 61 VLET-GKRLSASK------------KRDLAAIVRDGEAARRHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR +EE+AE +G+ ++ +L + P SLD +G ++
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDEELAEESGIPAAKIADLLDHSRDPVSLDMPVGSDEE 227
Query: 428 LKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEI 487
+ I D EA +AE +I + D+ VL TL+ RE+QV+R+R+GL+DG+ +TL +I
Sbjct: 228 APLGDFIEDSEATSAESAVIAGLLHSDVRSVLATLDEREQQVIRFRYGLDDGQPRTLDQI 287
Query: 488 GELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G++ G+SRER+RQIE KL+ +R L YA
Sbjct: 288 GKIFGLSRERVRQIEREVMGKLRQGERADRLRSYA 322
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 188/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q +K+E ++E L ++ G PT +QWA AA + ELR + G
Sbjct: 23 LLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQAGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQKGRTATISELAEELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + +++ D A + ED +++DL+K++ L P+
Sbjct: 203 REYLEKSRQPISLDVRVGDNNDTELGDMLEDTGA-SPEDYATYSSLRKDLDKLMTDLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL DG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QREVISLRFGLSDGKPLTLAKIGDCLNISRERVRQIEREALAKLRKQK 309
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 190/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L LE RE L+E +PT A+WAAA + + +L + G
Sbjct: 22 LLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDT 81
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 82 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 141
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 142 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQQYGRAATVMELAAELELTPKQV 201
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D E + E+ + ++ DL++++ L P+
Sbjct: 202 RDYLEKARQPLSLDLRVGDNQDTELSELLED-EGPSPEEFATQAALRRDLDRLMGDLTPQ 260
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++QV+R RFGL DG+ TL +IGE++ +SRER+RQIE A KL+ ++
Sbjct: 261 QQQVLRLRFGLTDGQTLTLAKIGEMLSISRERVRQIEREALTKLRKRR 308
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 189/290 (65%), Gaps = 1/290 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G PT +WAAA+ ++ EL + + G +
Sbjct: 23 LLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAVGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P E+++ L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQGLGRAPTVAELSQELDLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ D A T ED +++ + DLE+++ L P+
Sbjct: 203 REYLEKARLPLSLDLRLGDNYDTELGEMLEDTGA-TPEDFVMQTSLSYDLERIMSELTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515
+++V+ RFGL DG+ TL +IGE++ +SRER+RQIE A KL+ K T
Sbjct: 262 QKEVISLRFGLVDGQSLTLAKIGEVLNISRERVRQIEREALNKLRKSKAT 311
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYS----------DPLR-YLRATTSSSRLLTANEEM 233
A+ +V V+S + + ++E+D S DP+R YLR LLTA +E+
Sbjct: 94 ASIDVFDVESEKDAAKLTQQIEEIDLSKISLDKTVSSDPVRMYLREIGKVD-LLTAKQEI 152
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDK---- 289
+L A + K + L++ G PT + A G+D++ ++ DK
Sbjct: 153 EL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKDWNDKQGEA 211
Query: 290 ----MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+I +N+RLV+SIAK Y G G+ DL+QEG GL+R EKFD +GFKFSTYA WW
Sbjct: 212 AERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIGLMRAVEKFDWRRGFKFSTYATWW 271
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQSRTIR+P HMVE + K ++L + R P EEV++ G+ +++
Sbjct: 272 IRQAITRALADQSRTIRIPVHMVETINKYKRIERELEQKYERPPTAEEVSKEMGIEIEKA 331
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + SL+ +G ++ + E I D + + ++ +K + +VLDTLNPR
Sbjct: 332 QEILKISQDTTSLETPVGKEEDTRLKEFIPDEVGLSPFESASQELLKGHINEVLDTLNPR 391
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+V+ RFGL+DGR +TL+E+G GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 392 ERKVLELRFGLKDGRSRTLEEVGRDFGVTRERIRQIEAKALRKLRHPSRSKKLKDY 447
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 194/321 (60%), Gaps = 5/321 (1%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K ST R RP V D +R LLT EE+ +Q ++K ++ L
Sbjct: 9 KDQSTKRNTRPGVS----VDTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKL 64
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+++ P+ +WA + + EL R L+ G K KMI +N+RLV+SIAK YQ M
Sbjct: 65 TKKLEHEPSKTEWANEVELTEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEF 124
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL RG EKFD +G+KFSTYA+WW++QA+ ++++ RTIRLP H+ E
Sbjct: 125 LDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWVRQAITRAIAQNGRTIRLPIHITEKLN 184
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSE 432
++K ++ L + GR+P E+AEA L ++ LL+ + P SLD ++G NQ+ + E
Sbjct: 185 KIKRVQRDLVQKYGRNPTPTEIAEALELEPSQIREYLLASRHPISLDLRVGDNQDTELQE 244
Query: 433 VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG 492
++ D E +A++ + + +++DL+ ++D L P++R+V+ R+GLEDG+ +L ++G M
Sbjct: 245 LLED-ETASADNYVTHELLRQDLKSLIDELTPQQREVILLRYGLEDGKELSLSKVGARMS 303
Query: 493 VSRERIRQIESSAFRKLKNKK 513
+SRER+RQ+E+ A L+ +K
Sbjct: 304 ISRERVRQLENQALNHLRRRK 324
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 192/348 (55%), Gaps = 19/348 (5%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----M 233
+AAE A N+ V + S+ R+R + V DP+R LLTA EE M
Sbjct: 55 KAAEDAEVNLPKVTTRSSKVRRRSADTSVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 114
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
++ AG+ +LE E E G+D K ++I +
Sbjct: 115 KIEAGVAATAELEKAEEEGIELERRERRRLTRVEQVGID-------------AKQQLIEA 161
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++
Sbjct: 162 NLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRA 221
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
++DQSRTIR+P HMVE ++ ++QL E GR P+ EE+ E GL+ +R+ + +
Sbjct: 222 IADQSRTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIGEKMGLTAERVREIQKISQ 281
Query: 414 APRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWR 473
P SL+ IG ++ + + I D A D ++E L KVLD L RER+V+ R
Sbjct: 282 EPVSLETPIGEEEDSQLGDFIEDDAAIVPPDAASFSMLQEQLSKVLDGLAERERKVISLR 341
Query: 474 FGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
FGLEDG TL+E+G GV+RERIRQIES KL++ R+ L Y
Sbjct: 342 FGLEDGHPHTLEEVGRQFGVTRERIRQIESKTLAKLRHPSRSSKLKDY 389
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 188/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+ +RE L+ + PT +WA AA +D EL + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P+ E+A L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSASELASELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + E+ +++ + DLE++++ L P+
Sbjct: 203 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLERLMEQLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V++ RFGL DG+ TL +IGE++ +SRER+RQIE A KL+ K
Sbjct: 262 QREVIKLRFGLMDGQALTLAKIGEILNISRERVRQIEREALTKLRKSK 309
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE+ +Q L L+ + L+E G PT +WA A + + EL+R + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+ ++QL + GR E+AE GL+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIAEELGLTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + +++ D A + ED ++ M+ DLE ++ L P+
Sbjct: 204 RECLERARLPLSLDLRVGDNQDTELGDLLEDTGA-SPEDYALQSSMRTDLESIMVDLTPQ 262
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
++QV+ RFGLEDG+ TL +IG + +SRER+RQIE A KL+ +K+
Sbjct: 263 QKQVLALRFGLEDGQTMTLSKIGAHLNISRERVRQIEREALSKLRKRKQ 311
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 188/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 99 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 158
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 159 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 218
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 219 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 278
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL+ + P SLD ++G NQ+ + +++ D E+ +A+ + ++ +++DL+ ++ L P+
Sbjct: 279 RDYLLASRHPVSLDLRVGDNQDTELQDLLED-ESASADSYVTQELLRQDLKDLMADLTPQ 337
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ R+GL DG+ +L ++G M +SRER+RQ+E+ A L+ +K
Sbjct: 338 QREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRRRK 385
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 195/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P ++WA+AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + EL R + G K+KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 KITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+AE L+ +++ L + P SLD K+G NQ+ + E++ D + ED
Sbjct: 187 TISELAEELELTPRQVRDYLERARQPLSLDLKVGDNQDTELGELLEDT-GTSPEDYATHS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++++V+ RFGL DG+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQVDLEKLMSDLTPQQKEVLALRFGLVDGQPLTLAKIGVRLNISRERVRQIEREALSKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 196/316 (62%), Gaps = 6/316 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA--A 269
D ++Y T + LL NEE+ L+ IQ L+K E +RE L + PT+ +WA A
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
G+ ++++++ + K + SN+RLVISIAK YQG G+N+QDL QEG GL R EK
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEK 120
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +GF+FSTYA WWIKQ + ++++DQ+RTIRLP H+ + V++A + L +E GR
Sbjct: 121 FDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDA 180
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN---QNLKPSEVIADPEAETAEDLL 446
EEVA G+ ++ + + S++Q++G + ++ + + DP+ + D+
Sbjct: 181 TKEEVAAKVGMKPDKIEFLKRASVGSISMEQELGTSGSERSFTIQDTLGDPDQKPV-DMA 239
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
+ +++D+ +++ TLN RE+ V+R RFGL+DG+ KTL+EIG+ V+RERIRQIE+ A
Sbjct: 240 QYRMLQDDVGRLICTLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARAL 299
Query: 507 RKLKNKKRTKHLMQYA 522
KL+ R + YA
Sbjct: 300 HKLRQPYRNHTVKCYA 315
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 192/302 (63%), Gaps = 1/302 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++E + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATI 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
E+AE L+ K++ L + P SLD ++G NQ+ + +++ D E ++ ED +
Sbjct: 189 SELAEELDLTPKQVRDYLERSRQPLSLDLRVGDNQDTELGDLLED-EGQSPEDFATHSSL 247
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+ DLEK+++ L +++QV+ RFGL DG+ TL +IG + +SRER+RQIE A KL+
Sbjct: 248 QFDLEKLMEDLTIQQKQVIALRFGLMDGQPLTLAKIGSRLNISRERVRQIEREALSKLRK 307
Query: 512 KK 513
+K
Sbjct: 308 RK 309
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 189/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE++ +Q L+ +RE L+ + G PT +WA + +D +L + G +
Sbjct: 37 LLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P+ E+A L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSVGELATELDLTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + E+ +++ + DLE+V++ L P+
Sbjct: 217 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQTSLSSDLERVMEELTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL DG+ TL IGE++ +SRER+RQIE A KL+ K
Sbjct: 276 QREVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALNKLRKSK 323
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 192/302 (63%), Gaps = 1/302 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++E + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATI 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
E+AE L+ K++ L + P SLD ++G NQ+ + +++ D E ++ ED +
Sbjct: 189 SELAEELDLTPKQVRDYLERSRQPLSLDLRVGDNQDTELGDLLED-EGQSPEDFATHSSL 247
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+ DLEK+++ L +++QV+ RFGL DG+ TL +IG + +SRER+RQIE A KL+
Sbjct: 248 QFDLEKLMEDLTIQQKQVIALRFGLMDGQPLTLAKIGSRLNISRERVRQIEREALSKLRK 307
Query: 512 KK 513
+K
Sbjct: 308 RK 309
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 199/335 (59%), Gaps = 17/335 (5%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S ST+ R RPS ++D P +R + LLTA +E++L+ I+ G
Sbjct: 1 MTSPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIE-----AG 55
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
L G T A+ +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 56 LYASHVLATGKRLTVAK--------KRDLATIVREGQSARSHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR ++E+AE +G+ ++ +L + P SLD +G ++
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEE 227
Query: 428 LKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEI 487
+ I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +I
Sbjct: 228 APLGDFIEDSEATSAENAVIAGLLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQI 287
Query: 488 GELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G+L G+SRER+RQIE KL+ R + L YA
Sbjct: 288 GKLFGLSRERVRQIEREVMGKLRVGDRAEKLRSYA 322
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 200/335 (59%), Gaps = 17/335 (5%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S ST+ R RPS ++D P +R + LLTA +E++LS I+ L
Sbjct: 1 MTSPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAH 60
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
+ E +R SP +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 61 ILET-GKRL--SPA----------KKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR ++E+AE +G+ ++ +L + P SLD +G ++
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEE 227
Query: 428 LKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEI 487
+ I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +I
Sbjct: 228 APLGDFIEDSEATSAENAVIAGLLHSDVRTVLATLDEREQQVIRLRYGLDDGQPRTLDQI 287
Query: 488 GELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G+L G+SRER+RQIE KL+ R + L YA
Sbjct: 288 GKLFGLSRERVRQIEREVMGKLRQGDRAERLRSYA 322
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 200/335 (59%), Gaps = 17/335 (5%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S ST+ R RPS ++D P +R + LLTA +E++LS I+ L
Sbjct: 1 MTSPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAH 60
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
+ E +R SP +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 61 ILET-GKRL--SPA----------KKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR ++E+AE +G+ ++ +L + P SLD +G ++
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEE 227
Query: 428 LKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEI 487
+ I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +I
Sbjct: 228 APLGDFIEDSEATSAENAVIAGLLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQI 287
Query: 488 GELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G+L G+SRER+RQIE KL+ R + L YA
Sbjct: 288 GKLFGLSRERVRQIEREVMGKLRQGDRAERLRSYA 322
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 162/240 (67%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G+L K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 84 GVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 143
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ ++ L+ + GR +EE+A GL++
Sbjct: 144 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDEELANEAGLTV 203
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
+++ +L + P SLD +G ++ + I D E+ AE+ +I F+++DL +VL TL
Sbjct: 204 EKVADLLDHSRDPVSLDMPVGAEEDAPLGDFIEDAESADAENAVISGFLQDDLRRVLSTL 263
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
RE+ V+R R+GL+DG+ +TL +IG+ G+SRER+RQIE KL+ R L YA
Sbjct: 264 EEREQAVIRMRYGLDDGQPRTLDQIGKAFGLSRERVRQIEREVMSKLRQGDRADKLRAYA 323
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 195/304 (64%), Gaps = 3/304 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P +WA AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + ELRR + G K+KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 KISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKQGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+A+ L+ +++ L + P SLD ++G NQ+ + E++ D + ED
Sbjct: 187 TISELAQELELTPRQVREYLERARQPLSLDLRVGDNQDTELGELLEDT-GTSPEDYATHS 245
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++ DLEK++ L P++R+V+ RFGL DG+ TL +IG + +SRER+RQIE A KL
Sbjct: 246 SLQLDLEKLMSDLTPQQREVLALRFGLVDGQPLTLAKIGVRLNISRERVRQIEREALSKL 305
Query: 510 KNKK 513
+ +K
Sbjct: 306 RKRK 309
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 192/302 (63%), Gaps = 1/302 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLT EE+ + +Q L+ LE LR+ + E G PT QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++EL+ + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATV 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
E+AE L+ K++ L + P SLD ++G NQ+ + +++ D + ++ ED +
Sbjct: 189 VELAEELDLTPKQVREYLERARQPLSLDLRVGDNQDTELGDLLED-DGQSPEDFATHSSL 247
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+ DLE++++ L ++++V+ RFGL DG+ TL +IG + +SRER+RQIE A KL+
Sbjct: 248 QFDLERLMEDLTSQQKEVIALRFGLLDGQPLTLAKIGSRLNISRERVRQIEREALSKLRK 307
Query: 512 KK 513
+K
Sbjct: 308 RK 309
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 215/376 (57%), Gaps = 15/376 (3%)
Query: 146 LEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTS------- 198
L+ H KLL + + +RS+R ER++++ A ++ + + ST
Sbjct: 174 LDLNHSYEKLLSKG---QVFIRSKRLLERRSKKRDAPRASSTDALCGVVSSTDALCGVVD 230
Query: 199 ----RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
+ + + +D +P + ++ LTA EE QL + +Q+L+KLE + L
Sbjct: 231 TKKKEKSKKYGRVLDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEA 290
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+CG P +WA A G+ ++L+ ++ G C++KM SN RLVI +A+ YQG G++++D
Sbjct: 291 QCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIED 350
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
LVQ+GC GL++ EKF+ SKG +F TYA+WWI+QA++KS+ SR IRLP + +V
Sbjct: 351 LVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYALLKKV 410
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVI 434
+AR + E G P NE VA G+++++L + + RSL ++ + + E+
Sbjct: 411 GKARLECILE-GEQPTNENVARRAGITIEKLAKLKAKTRKSRSLQDRVWPDDGVTFQEIT 469
Query: 435 ADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVS 494
DP E + ++ + M++ + L L+ RE++++ RFG+ DG KTL IG++ G+S
Sbjct: 470 EDPNIEPPDLVVDRMMMRQQVRDFLGILSTREKEIIEHRFGIYDGEPKTLHVIGDMYGLS 529
Query: 495 RERIRQIESSAFRKLK 510
+ERIRQ+++ A KLK
Sbjct: 530 KERIRQLQNRALDKLK 545
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 170/250 (68%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|256377300|ref|YP_003100960.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255921603|gb|ACU37114.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 349
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 189/330 (57%), Gaps = 15/330 (4%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+K +T RR + D + YL+A RLLTA++E++L+ ++ L E L ++
Sbjct: 33 IKLAATLRRDAEAANAADSTRA--YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLDL 89
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
G ELRR + G KD ++ +N+RLV+SIAK Y G GM
Sbjct: 90 PPAARGSRRPI------------ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKGMA 137
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
L D++QEG GLVR EKFD +KGFKFSTYA WWI+QA+ ++L+DQSRTIRLP HMVE
Sbjct: 138 LLDVIQEGNLGLVRAVEKFDYAKGFKFSTYATWWIRQAITRALADQSRTIRLPVHMVEVV 197
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
++ + L NGR EEVA ++ +++ + + P SLDQ IG +
Sbjct: 198 TKLARVERDLLHRNGREATAEEVAVELDVTPEKVVELRQHARTPVSLDQTIGAEADTSIG 257
Query: 432 EVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM 491
++IAD A + + + DL VLDTL PRE VVR R+G DG + TL+E+G +
Sbjct: 258 DLIADENAVAPLEAVSSALLSADLRAVLDTLTPREAGVVRMRYGFPDGVLHTLEEVGRVY 317
Query: 492 GVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GV+RERIRQIES KL++ R++ L Y
Sbjct: 318 GVTRERIRQIESRTMAKLQHPARSRGLEGY 347
>gi|358457491|ref|ZP_09167709.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357079327|gb|EHI88768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 385
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 192/331 (58%), Gaps = 24/331 (7%)
Query: 198 SRRKRP--SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
SRR+ P + +DP+R YLR + LLTA E+ L+ I+
Sbjct: 70 SRRRGPEKPASDAPATDPVRVYLRDIGKVA-LLTAEGEVDLAKRIE-------------- 114
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGM 310
G + A A G RR L G + K +++ +N+RLV+S+AK Y GM
Sbjct: 115 --AGVFAAHKLATATGATTPRERRDLEAVEADGNIAKRRLVEANLRLVVSVAKRYVSRGM 172
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
D+VQEG GL+R EKFD +KGFKFSTYA WWI+QA+ +SL+DQ+RTIR+P H+VE
Sbjct: 173 PFLDVVQEGNLGLIRAVEKFDYAKGFKFSTYATWWIRQAISRSLADQARTIRIPVHLVEI 232
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
R+ ++QL SE GR P+ EE+A L+ +R+ +L+ + P SLD IG + +
Sbjct: 233 INRLVRVQRQLVSELGRDPSPEELAAEMDLTPQRVREILMISREPVSLDTPIGEDASAHF 292
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
++I D +A + +E L+ VL TL RERQVVR R+GL DGR +TL+E+G
Sbjct: 293 GDLIEDSDAVVPFEAATVGLFQEQLDAVLRTLPDRERQVVRLRYGLTDGRPRTLEEVGHE 352
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GV+RERIRQIES A KL++ R++ L Y
Sbjct: 353 FGVTRERIRQIESKALAKLRHPSRSEKLHGY 383
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 187/302 (61%), Gaps = 1/302 (0%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + ++++ +L+ E++++ QD L LE ++ + PT + AAA G
Sbjct: 399 NDGTDHFLHSSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVG 458
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+D R + G+ K+ ++ SN RLV+++ K Y G GM+LQDLV EG +GL+RG E +
Sbjct: 459 MDVMAYNMRYDAGLKAKELLLKSNYRLVMTVCKRYIGKGMHLQDLVSEGVKGLLRGVEMY 518
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
DAS+GF+F TYAHWWI+QAV +S+++ R +RLP HM+E ++K A L E R P+
Sbjct: 519 DASRGFRFGTYAHWWIRQAVSRSMAETGRAVRLPVHMIEQLTKLKNATAALAMELNREPS 578
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+AEA GL R+ +L + +A S++ IG + L + + D E A++
Sbjct: 579 VEEMAEAVGLPPSRVELLLDAARAASSMESAIGGDDGLTIKDAVQD-ERMAADEAFGSDS 637
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
M+ D+E +L+ L+ RE V+R RFGLEDG TL++IG +GV+RERIRQ+E+ A RKL+
Sbjct: 638 MRADVESMLEGLSDREACVLRLRFGLEDGVEWTLEDIGSRLGVTRERIRQLEAKALRKLQ 697
Query: 511 NK 512
K
Sbjct: 698 VK 699
>gi|418625259|ref|ZP_13187912.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU125]
gi|374825401|gb|EHR89337.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU125]
Length = 368
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 166/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P +EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKLIRVQRQLLQDLGRDPAHEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 169/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 190/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + IQ+L+ LE +E L+++ PT +WA AA + ++ L+ ++ G
Sbjct: 23 LLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQGEK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+SIAK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SR IRLP H+ E ++++ +++L E GR E+AEA LS +++
Sbjct: 143 IRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELAEALELSTEQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD K+G N + + E++ D + ++ ED ++ DL+K++ L +
Sbjct: 203 REYLGKARQPLSLDLKVGDNNDTELGELLED-KGQSPEDFTDYSCLQFDLKKMMSELTQQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++ V+R R+GLEDG+ TL +IG+++ +SRER+RQIE A KL+ +K
Sbjct: 262 QQDVIRLRYGLEDGKPLTLSKIGDILSISRERVRQIEREALTKLRKRK 309
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 168/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRELAMVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ + +++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAEESGIPIDKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAASAENTVIAELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QVVR RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 249 TDIRSVLATLDEREQQVVRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 189/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q L++LE + L E+ + A+WA AA V +LR+ ++ G +
Sbjct: 23 LLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDAGEV 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++Q+ + GR E+AE L+ +++
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQIAQQKGRSATIAELAEELELTPRQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ D ++ ED ++ DL++++D L P+
Sbjct: 203 REYLERARQPLSLDLRVGDNNDTELGELLEDS-GQSPEDYATYSSLQFDLDRLMDDLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL DG+ TL +IG L+ +SRER+RQIE A KL+ +K
Sbjct: 262 QREVISLRFGLTDGKPLTLSKIGVLLNISRERVRQIEREALAKLRKRK 309
>gi|302335781|ref|YP_003800988.1| RNA polymerase sigma-70 subunit RpoD [Olsenella uli DSM 7084]
gi|301319621|gb|ADK68108.1| RNA polymerase, sigma 70 subunit, RpoD [Olsenella uli DSM 7084]
Length = 453
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 180/316 (56%), Gaps = 21/316 (6%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG- 270
DP+R LLTA+EE+ L+ I+ G T AA G
Sbjct: 150 DPVRMYLKEIGKVDLLTASEEVHLAMKIE---------------AGTEATERLEAADRGE 194
Query: 271 -----VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
+QR L R G+ K +I++N+RL +SIAK Y G GM DL+QEG GL+R
Sbjct: 195 IELTRAEQRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIR 254
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL +
Sbjct: 255 AVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDL 314
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR P EE+ G+S R+ + + P SL+ IG ++ + I D A +
Sbjct: 315 GRDPTPEEIGAEMGISADRVREIQKISQEPVSLETPIGEEEDSSLGDFIEDSSAVAPPEA 374
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
++E LE+VLD+L RER+V+++RFGLEDG +TL+E+G GV+RERIRQIES
Sbjct: 375 ASDSMLREQLEQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQIESKT 434
Query: 506 FRKLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 435 LAKLRHPSRSGRLKDY 450
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL+ + P SLD ++G NQ+ + +++ D E+ +A+ + ++ +++DL+ ++ L P+
Sbjct: 217 RDYLLASRHPVSLDLRVGDNQDTELQDLLED-ESASADSYVTQQLLRQDLKDMMADLTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ R+GL DG+ +L ++G M +SRER+RQ+E+ A L+ +K
Sbjct: 276 QREVLTLRYGLNDGKEMSLSKVGVQMNISRERVRQLENQALNHLRRRK 323
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 213/385 (55%), Gaps = 23/385 (5%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 201
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 103 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 157
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD----------------LLKL 245
+ + ++ +P + ++ LTA EE L + IQ L+K+
Sbjct: 158 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKI 217
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
E L +CG PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y
Sbjct: 218 EEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKY 277
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
+G G+++QDLVQ+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 278 EGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPE 337
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
+ +V +AR + E G P N VA G+++++L + + PRS+ + +
Sbjct: 338 SVYALLRKVGKARMECIME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSD 396
Query: 426 QNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQ 485
+ + E+ DP E + + + M++ + L L+PRE++++ RFG+ DG KTL
Sbjct: 397 EGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLH 456
Query: 486 EIGELMGVSRERIRQIESSAFRKLK 510
IG++ G+S+ERIRQ+++ A KLK
Sbjct: 457 VIGDMFGLSKERIRQLQNRALEKLK 481
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 162/233 (69%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA
Sbjct: 86 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQA 145
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ +++L+ GR P +EE+AE +G+ ++++ +L
Sbjct: 146 ITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQTLGREPTDEELAEESGIPVEKIADLL 205
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLD +G ++ + I D EA +AE+ +I + + D+ VL TL+ RE+QV
Sbjct: 206 DHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAELLHTDIRHVLATLDEREQQV 265
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++ +R L YA
Sbjct: 266 IRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHGERADRLRSYA 318
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 39 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 159 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL+ + P SLD ++G NQ+ + +++ D E+ +A+ + ++ +++DL+ ++ L P+
Sbjct: 219 RDYLLASRHPVSLDLRVGDNQDTELQDLLED-ESASADSYVTQQLLRQDLKDMMADLTPQ 277
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ R+GL DG+ +L ++G M +SRER+RQ+E+ A L+ +K
Sbjct: 278 QREVLTLRYGLNDGKEMSLSKVGVQMNISRERVRQLENQALNHLRRRK 325
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 202/354 (57%), Gaps = 12/354 (3%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
+A ++RA + +N K SR+ + SV+E + D + Y T + LL NEE+
Sbjct: 114 RAIKSRATKPGNSNGEPPKP--VSRKIKASVRETGF-DSMHYYMKTMGNHELLQKNEEII 170
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR--ELRRRLNYGILCKDKMIT 292
L+ IQ L+ EG R+ L PT+ +WAA+ + +L+R++ + K +
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLVISIAK YQ G+N+QDL QEG GL R EKFD KGF+FSTYA WWIKQ + +
Sbjct: 231 SNLRLVISIAKRYQNRGLNMQDLCQEGTLGLTRACEKFDPEKGFRFSTYATWWIKQGIMR 290
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIRLP H+ + V++ L SE GR P EE+A G+ ++ L
Sbjct: 291 AIADQARTIRLPVHIHDQLNLVRKTENDLASELGRDPTKEEIAAKVGIKPDKID-FLKRS 349
Query: 413 KAPRSLDQKI-----GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRER 467
K R + G ++ + + DPE + D+ + +++DL +++ TLN RE+
Sbjct: 350 KGIRGGYRWFQGGAAGSERSFTIQDTLGDPEQQPV-DMAQYRMLQDDLSRLIRTLNAREQ 408
Query: 468 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+R RFGL+DG KTL+EIG V+RERIRQIE+ A KL+ R + Y
Sbjct: 409 AVIRLRFGLDDGTPKTLEEIGRKFSVTRERIRQIEARALHKLRQPYRNHTVKCY 462
>gi|70726356|ref|YP_253270.1| RNA polymerase sigma factor RpoD [Staphylococcus haemolyticus
JCSC1435]
gi|68447080|dbj|BAE04664.1| RNA polymerase sigma factor [Staphylococcus haemolyticus JCSC1435]
Length = 368
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|228476045|ref|ZP_04060753.1| RNA polymerase sigma factor RpoD [Staphylococcus hominis SK119]
gi|314936318|ref|ZP_07843665.1| RNA polymerase sigma factor RpoD [Staphylococcus hominis subsp.
hominis C80]
gi|418619989|ref|ZP_13182800.1| RNA polymerase sigma factor RpoD [Staphylococcus hominis VCU122]
gi|228269868|gb|EEK11348.1| RNA polymerase sigma factor RpoD [Staphylococcus hominis SK119]
gi|313654937|gb|EFS18682.1| RNA polymerase sigma factor RpoD [Staphylococcus hominis subsp.
hominis C80]
gi|374823552|gb|EHR87547.1| RNA polymerase sigma factor RpoD [Staphylococcus hominis VCU122]
Length = 368
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|27468166|ref|NP_764803.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis ATCC
12228]
gi|57867102|ref|YP_188703.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis RP62A]
gi|251810978|ref|ZP_04825451.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876013|ref|ZP_06284880.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis SK135]
gi|293366478|ref|ZP_06613155.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis M23864:W2(grey)]
gi|416125300|ref|ZP_11595898.1| RNA polymerase sigma factor rpoD [Staphylococcus epidermidis
FRI909]
gi|417646996|ref|ZP_12296845.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU144]
gi|417656078|ref|ZP_12305769.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU028]
gi|417659664|ref|ZP_12309264.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU045]
gi|417908758|ref|ZP_12552515.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU037]
gi|417912195|ref|ZP_12555890.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU105]
gi|417913674|ref|ZP_12557337.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU109]
gi|418325674|ref|ZP_12936880.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU071]
gi|418411973|ref|ZP_12985239.1| RNA polymerase sigma factor rpoD [Staphylococcus epidermidis
BVS058A4]
gi|418605491|ref|ZP_13168815.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU041]
gi|418606613|ref|ZP_13169883.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU057]
gi|418609474|ref|ZP_13172626.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU065]
gi|418612798|ref|ZP_13175822.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU117]
gi|418614752|ref|ZP_13177714.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU118]
gi|418616221|ref|ZP_13179146.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU120]
gi|418621422|ref|ZP_13184198.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU123]
gi|418626383|ref|ZP_13188995.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU126]
gi|418629357|ref|ZP_13191865.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU127]
gi|418633017|ref|ZP_13195434.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU129]
gi|418665230|ref|ZP_13226680.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU081]
gi|420163067|ref|ZP_14669814.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM095]
gi|420165554|ref|ZP_14672245.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM088]
gi|420167958|ref|ZP_14674610.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM087]
gi|420170270|ref|ZP_14676831.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM070]
gi|420172614|ref|ZP_14679113.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM067]
gi|420178258|ref|ZP_14684591.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM057]
gi|420180066|ref|ZP_14686326.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM053]
gi|420183223|ref|ZP_14689356.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM049]
gi|420184534|ref|ZP_14690643.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM040]
gi|420187235|ref|ZP_14693256.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM039]
gi|420194859|ref|ZP_14700656.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM021]
gi|420197441|ref|ZP_14703165.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM020]
gi|420199494|ref|ZP_14705172.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM031]
gi|420201691|ref|ZP_14707301.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM018]
gi|420204477|ref|ZP_14710035.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM015]
gi|420206120|ref|ZP_14711630.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM008]
gi|420209067|ref|ZP_14714505.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM003]
gi|420211224|ref|ZP_14716598.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM001]
gi|420214021|ref|ZP_14719301.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH05005]
gi|420216479|ref|ZP_14721687.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH05001]
gi|420220507|ref|ZP_14725466.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH04008]
gi|420221652|ref|ZP_14726579.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH08001]
gi|420225758|ref|ZP_14730585.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH06004]
gi|420227349|ref|ZP_14732119.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH05003]
gi|420229665|ref|ZP_14734370.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH04003]
gi|420234723|ref|ZP_14739283.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH051475]
gi|421606944|ref|ZP_16048195.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
AU12-03]
gi|47606037|sp|Q8CP24.1|RPOD_STAES RecName: Full=RNA polymerase sigma factor RpoD
gi|81674470|sp|Q5HNY7.1|RPOD_STAEQ RecName: Full=RNA polymerase sigma factor RpoD
gi|27315712|gb|AAO04847.1|AE016748_81 RNA polymerase sigma factor [Staphylococcus epidermidis ATCC 12228]
gi|57637760|gb|AAW54548.1| RNA polymerase sigma-70 factor [Staphylococcus epidermidis RP62A]
gi|251805488|gb|EES58145.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295038|gb|EFA87565.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis SK135]
gi|291319247|gb|EFE59616.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis M23864:W2(grey)]
gi|319400897|gb|EFV89116.1| RNA polymerase sigma factor rpoD [Staphylococcus epidermidis
FRI909]
gi|329725345|gb|EGG61828.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU144]
gi|329735301|gb|EGG71593.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU045]
gi|329737328|gb|EGG73582.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU028]
gi|341651206|gb|EGS75011.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU105]
gi|341654696|gb|EGS78434.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU109]
gi|341656119|gb|EGS79842.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU037]
gi|365228276|gb|EHM69461.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU071]
gi|374402380|gb|EHQ73410.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU041]
gi|374407389|gb|EHQ78251.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU057]
gi|374407688|gb|EHQ78540.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU065]
gi|374409205|gb|EHQ80005.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU081]
gi|374817875|gb|EHR82050.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU117]
gi|374819288|gb|EHR83416.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU118]
gi|374821047|gb|EHR85114.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU120]
gi|374829366|gb|EHR93170.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU123]
gi|374832817|gb|EHR96522.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU126]
gi|374834060|gb|EHR97720.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU127]
gi|374839836|gb|EHS03343.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU129]
gi|394234756|gb|EJD80330.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM095]
gi|394235355|gb|EJD80927.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM088]
gi|394237986|gb|EJD83472.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM087]
gi|394240608|gb|EJD86031.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM070]
gi|394241775|gb|EJD87184.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM067]
gi|394246884|gb|EJD92136.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM057]
gi|394249686|gb|EJD94899.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM049]
gi|394251498|gb|EJD96583.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM053]
gi|394256214|gb|EJE01147.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM039]
gi|394257185|gb|EJE02107.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM040]
gi|394263919|gb|EJE08640.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM021]
gi|394266248|gb|EJE10894.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM020]
gi|394271959|gb|EJE16438.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM018]
gi|394272276|gb|EJE16745.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM031]
gi|394273487|gb|EJE17918.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM015]
gi|394277959|gb|EJE22276.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM008]
gi|394279295|gb|EJE23603.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM003]
gi|394281677|gb|EJE25903.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM001]
gi|394283943|gb|EJE28104.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH05005]
gi|394285860|gb|EJE29926.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH04008]
gi|394290278|gb|EJE34142.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH08001]
gi|394291845|gb|EJE35628.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH05001]
gi|394293192|gb|EJE36915.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH06004]
gi|394297218|gb|EJE40825.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH05003]
gi|394298959|gb|EJE42514.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH04003]
gi|394303966|gb|EJE47376.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIH051475]
gi|406657413|gb|EKC83801.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
AU12-03]
gi|410891556|gb|EKS39353.1| RNA polymerase sigma factor rpoD [Staphylococcus epidermidis
BVS058A4]
Length = 368
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|425737397|ref|ZP_18855670.1| RNA polymerase sigma factor RpoD [Staphylococcus massiliensis S46]
gi|425482745|gb|EKU49901.1| RNA polymerase sigma factor RpoD [Staphylococcus massiliensis S46]
Length = 369
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 120 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 179
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 180 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 239
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 240 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 299
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 300 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 359
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 360 RSKRLKDF 367
>gi|418329801|ref|ZP_12940847.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
14.1.R1.SE]
gi|419769577|ref|ZP_14295671.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-250]
gi|365229596|gb|EHM70739.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
14.1.R1.SE]
gi|383358196|gb|EID35657.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-250]
Length = 319
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 70 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 129
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 130 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 189
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 190 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 249
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 250 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 309
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 310 RSKRLKDF 317
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 185/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L L ++E L+E+ G PT +W+ AAG+ EL++ + G
Sbjct: 23 LLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGET 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A ++L + GR E+A LS K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTATIGELAVELELSPKQI 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLD ++G N + + SE++ D + ED M+ DLEK++ L +
Sbjct: 203 REYMERARHPLSLDLRVGDNHDTELSELLEDT-GPSPEDFATHSAMRADLEKLMSELTTQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGLEDG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QREVIALRFGLEDGQAMTLSKIGDRLNISRERVRQIEREALTKLRKRK 309
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 190/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+Q +Q L +R+ L + G P+ +WA AA ++ EL + G
Sbjct: 37 LLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIADGET 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P+ E+A+ L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSAAELAQELDLTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + E+ +++ + DLE++++ L P+
Sbjct: 217 REYLERARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLERLMEELTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V++ RFGL DG+ TL +IG+++ +SRER+RQIE A KL+ K
Sbjct: 276 QKEVIKLRFGLLDGQALTLAKIGDILNISRERVRQIEREALTKLRKSK 323
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLESTELNDIIADGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P+ E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAEELELTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + E+ +++ + DLE+++ L P+
Sbjct: 203 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSLDLERLMGELTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V+ RFGL DG+ TL IGE++ +SRER+RQIE A KL+ K
Sbjct: 262 QKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALTKLRKSK 309
>gi|15927141|ref|NP_374674.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus N315]
gi|20178083|sp|Q99TT5.1|RPOD_STAAN RecName: Full=RNA polymerase sigma factor RpoD
gi|13701359|dbj|BAB42653.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
N315]
Length = 368
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ VL + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|419771781|ref|ZP_14297827.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-K]
gi|383360600|gb|EID37995.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-K]
Length = 368
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L ++ L+ R G +P+F +WA A+ + EL++ + G
Sbjct: 23 LLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSSAELKQAIAEGEY 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATAAELAQELDLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + E+ ++ ++ DLE ++ L P+
Sbjct: 203 RDYLEQARQPLSLDLRVGDNQDTELGELLEDT-GTSPEEFALQSSLRTDLESLMADLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+RQV+ RFGLEDG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QRQVLTLRFGLEDGQALTLAKIGDQLNISRERVRQIEREALSKLRKRK 309
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 189/312 (60%), Gaps = 13/312 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA EE++L+ I+ + + + E G P A
Sbjct: 31 ADLVRVYLNGIGKTALLTAAEEVELAKRIEAGVFAQHMLE-----TGSGP--------AS 77
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ ELR + G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 78 TRREELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKF 137
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR
Sbjct: 138 DYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREAT 197
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+E+A+ +GL+ ++ +L + P SLD +G ++ + I D +A AE +I
Sbjct: 198 TDELAKESGLTPAKVSDLLDHARDPVSLDMPVGAEEDAPLGDFIEDSDATDAESAVISGL 257
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++DL +VL TL+ RE+ V+R R+GLEDG+ +TL +IG+L G+SRER+RQIE KL+
Sbjct: 258 LQDDLRRVLATLDQREQSVIRLRYGLEDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLR 317
Query: 511 NKKRTKHLMQYA 522
+R L YA
Sbjct: 318 QGERAAKLRAYA 329
>gi|257063660|ref|YP_003143332.1| RNA polymerase sigma factor RpoD [Slackia heliotrinireducens DSM
20476]
gi|256791313|gb|ACV21983.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 394
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 178/315 (56%), Gaps = 17/315 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLT +EE M++ AG+ +LE E E
Sbjct: 90 GDPVRMYLKEIGKVPLLTPSEEVDLAMKIEAGVAATAELEKAEEEGVELDRRERRRLTRV 149
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D KD++I +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 150 EQVGLD-------------AKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 196
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E G
Sbjct: 197 VEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELG 256
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+ E GLS +R+ + + P SL+ IG ++ + + I D A D
Sbjct: 257 RDPSPEEIGEKMGLSAERVREIQKLSQEPVSLETPIGEEEDSQLGDFIEDDSAIVPVDAA 316
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
M+E L KVLDTL RER VV RFGLEDG+ TL+E+G GV+RERIRQIES
Sbjct: 317 SFAMMQEQLSKVLDTLGERERNVVIKRFGLEDGQPHTLEEVGREFGVTRERIRQIESKTL 376
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 377 AKLRHPSRSSKLKDY 391
>gi|418053337|ref|ZP_12691407.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353178512|gb|EHB44091.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 319
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 168/251 (66%), Gaps = 6/251 (2%)
Query: 278 RRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
R+ + I+ +D ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 68 RKRDLAIIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 127
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +
Sbjct: 128 YTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQSLGREATD 187
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
+E+AE +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 188 DELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAELL 247
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 248 HTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRN 307
Query: 512 KKRTKHLMQYA 522
R L YA
Sbjct: 308 GDRADRLRSYA 318
>gi|418324183|ref|ZP_12935433.1| RNA polymerase sigma factor RpoD, partial [Staphylococcus
pettenkoferi VCU012]
gi|365227431|gb|EHM68627.1| RNA polymerase sigma factor RpoD, partial [Staphylococcus
pettenkoferi VCU012]
Length = 317
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 68 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 127
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 128 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 187
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 188 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 247
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 248 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 307
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 308 RSKRLKDF 315
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 185/290 (63%), Gaps = 1/290 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L+ L+ ++ L E G +W+ AAG+ + EL +L +G
Sbjct: 32 LLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+++AK YQ + DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ QSRTIRLP H+ E ++K ++ L + GR P+ E+ + L+ +++
Sbjct: 152 IRQAITRAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPSVGEIGQELDLTPEQV 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD +IG NQ+ + E++ D + + ED +++ +++D+ +L L P+
Sbjct: 212 REYLTMSRQPISLDVRIGDNQDTELQELLED-DTVSPEDYTVQQSLRQDIRNMLTELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515
+++V+ RFGL DG +L ++G+ MG+SRER+RQ+E A + L+ +K T
Sbjct: 271 QKEVINLRFGLIDGTQLSLAKVGQRMGISRERVRQLEQQALKHLRRRKAT 320
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 227/365 (62%), Gaps = 18/365 (4%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMS-------VKSGSTSRRKRPSVQEVDYSDPLRY 216
+ V + ++ ERK+RR RA+ + S ++SGS ++P+V +
Sbjct: 204 VVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGS----EKPTVSSGKKA----- 254
Query: 217 LRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 276
+ + S RL+ A E +++ GI+ L LE +R L E + + WA AAG+D + L
Sbjct: 255 --SKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVL 312
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+++L++G C+D++I S LV+ A+NY+G G+ L+DL+Q G G++ GAE+FD ++G+
Sbjct: 313 QQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGY 372
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTY +WI++++ K +S +R I++P + A Y++++ARK L + NG++P+++E+A+
Sbjct: 373 RFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAK 432
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
TGLS+ ++ + + S+DQKIG + N K E + D ++ E++++++ M +D+
Sbjct: 433 YTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMH 492
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
+L +L+ RERQV+ RFGL D + K+L+EIG VS+E +R++E +L+N++ +
Sbjct: 493 NLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCR 552
Query: 517 HLMQY 521
+L Y
Sbjct: 553 NLRHY 557
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P E+A L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + ED +++ + DLE +++ L P+
Sbjct: 217 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEDFVMQSSLSNDLEVLMEQLTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V+ RFGL DG+ TL IGE++ +SRER+RQIE A KL+ K
Sbjct: 276 QKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALTKLRKSK 323
>gi|385682350|ref|ZP_10056278.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 341
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 168/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
++EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 91 RKELEALVRDGHKAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 150
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR NE
Sbjct: 151 SKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNE 210
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G++++++ +L + P SLD +G +++ + I D EA AE +I ++
Sbjct: 211 ELAAESGIAVEKVADLLDHARDPVSLDMPVGTDEDAPLGDFIEDSEATDAESAVISGLLQ 270
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+DL +VL TL+ RE+QV+R R+GL+DG+ +TL +IG+ G+SRER+RQIE KL+
Sbjct: 271 DDLRRVLATLDEREQQVIRMRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQG 330
Query: 513 KRTKHLMQYA 522
+R + L YA
Sbjct: 331 ERAERLRAYA 340
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 171/246 (69%)
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LRRR++ G ++ + T+N+RLV+S+AK Y G G++L DL+QEG GL+R EKF+ +KG
Sbjct: 153 LRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEKFNYTKG 212
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
FKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L ENGR P++EE+A
Sbjct: 213 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELA 272
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDL 455
+A L+++++ ++ + P SL+ +G ++ + + + D + E D + ++E +
Sbjct: 273 QALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLGDFLPDEKLEAPSDAASHQMLREQV 332
Query: 456 EKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515
+VLD L RE++V++ RFGLEDG +TL+E+G+ GV+RERIRQIE A RKL++ +
Sbjct: 333 AQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRFG 392
Query: 516 KHLMQY 521
K L Y
Sbjct: 393 KKLRDY 398
>gi|379795920|ref|YP_005325918.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872910|emb|CCE59249.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 368
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 162/233 (69%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA
Sbjct: 86 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQA 145
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ +++++ GR +EE+AE +G+ +++++ +L
Sbjct: 146 ITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLL 205
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLD +G ++ + I D EA +AE+ +I + + D+ VL TL+ RE+QV
Sbjct: 206 EHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQV 265
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N +R L YA
Sbjct: 266 IRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSYA 318
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G P +WAAA ++ L + G +
Sbjct: 54 LLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIADGEI 113
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 114 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 173
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ K++
Sbjct: 174 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPTAAELAQELELTPKQV 233
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + E+ +++ + DLE+++ L P+
Sbjct: 234 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLERLIAELTPQ 292
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V+ RFGL DG+ TL +IGE++ +SRER+RQIE A KL+ K
Sbjct: 293 QKEVITLRFGLIDGQALTLAKIGEILNISRERVRQIEREALTKLRKSK 340
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 207/371 (55%), Gaps = 18/371 (4%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRKRPSVQEVDYSDPLR 215
E Q + VRS R ER+++R A + A+V S + + + + ++ +P +
Sbjct: 152 ELQSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFK 211
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQD----------------LLKLEGLREVLSERCGGS 259
++ LTA EE L + IQ L+K+E L +CG
Sbjct: 212 LFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGRE 271
Query: 260 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 319
PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+G
Sbjct: 272 PTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDG 331
Query: 320 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 379
C GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +AR
Sbjct: 332 CSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARM 391
Query: 380 QLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEA 439
+ E G P N VA G+++++L + + PRS+ + ++ + E+ DP
Sbjct: 392 ECIME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNV 450
Query: 440 ETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIR 499
E + + + M++ + L L+PRE++++ RFG+ DG KTL IG++ G+S+ERIR
Sbjct: 451 EPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIR 510
Query: 500 QIESSAFRKLK 510
Q+++ A KLK
Sbjct: 511 QLQNRALEKLK 521
>gi|257425686|ref|ZP_05602110.1| transcription initiation factor sigma plaC [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257271380|gb|EEV03526.1| transcription initiation factor sigma plaC [Staphylococcus aureus
subsp. aureus 55/2053]
Length = 368
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D188]
Length = 323
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 203/337 (60%), Gaps = 25/337 (7%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL- 248
S ST+ R RP+ ++D P +R + LLTA EE+ L+ I+ GL
Sbjct: 3 SPSTTIRPRPTDADLDAQSPAADLVRVYLNGIGRTALLTAEEEVDLAKRIE-----AGLY 57
Query: 249 -REVL--SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
++VL ++R + V +R L + G + ++ +N+RLV+S+AK Y
Sbjct: 58 AKQVLENTKRL------------SAVKKRNLAIIVRDGSAARSHLLEANLRLVVSLAKRY 105
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP
Sbjct: 106 TGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
H+VE ++ +++L+ + GR +EE++ +G++++++ +L + P SLD +G +
Sbjct: 166 HLVEQVNKLARIKRELHQQLGREATDEELSSESGIAVEKIADLLDHSRDPVSLDMPVGSD 225
Query: 426 QNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQ 485
+ + I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL
Sbjct: 226 EEAPLGDFIEDSEATSAENAVIAGLLHSDVRVVLGTLDEREQQVIRLRYGLDDGQPRTLD 285
Query: 486 EIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+IG+L G+SRER+RQIE KL+ R + L YA
Sbjct: 286 QIGKLFGLSRERVRQIEREVMVKLRQGDRAEKLRSYA 322
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 168/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 139 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 199 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 259 TDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 318
Query: 513 KRTKHLMQYA 522
R L YA
Sbjct: 319 DRADRLRSYA 328
>gi|15924551|ref|NP_372085.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus Mu50]
gi|21283242|ref|NP_646330.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MW2]
gi|49483810|ref|YP_041034.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49486397|ref|YP_043618.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651954|ref|YP_186458.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus COL]
gi|82751164|ref|YP_416905.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus RF122]
gi|87162254|ref|YP_494216.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195369|ref|YP_500173.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268045|ref|YP_001246988.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus JH9]
gi|150394113|ref|YP_001316788.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus JH1]
gi|151221676|ref|YP_001332498.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979879|ref|YP_001442138.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus Mu3]
gi|161509790|ref|YP_001575449.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140019|ref|ZP_03564512.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253314932|ref|ZP_04838145.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253732214|ref|ZP_04866379.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253733189|ref|ZP_04867354.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus TCH130]
gi|255006347|ref|ZP_05144948.2| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257428347|ref|ZP_05604745.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257433672|ref|ZP_05610030.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus E1410]
gi|257436586|ref|ZP_05612630.1| transcription initiation factor sigma plaC [Staphylococcus aureus
subsp. aureus M876]
gi|257793637|ref|ZP_05642616.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A9781]
gi|258411063|ref|ZP_05681343.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A9763]
gi|258420133|ref|ZP_05683088.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9719]
gi|258423989|ref|ZP_05686871.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A9635]
gi|258443599|ref|ZP_05691938.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8115]
gi|258448720|ref|ZP_05696832.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A6224]
gi|258450610|ref|ZP_05698672.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A5948]
gi|258453537|ref|ZP_05701515.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A5937]
gi|262049137|ref|ZP_06022014.1| RNA polymerase sigma factor [Staphylococcus aureus D30]
gi|262051223|ref|ZP_06023447.1| RNA polymerase sigma factor [Staphylococcus aureus 930918-3]
gi|269203189|ref|YP_003282458.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus ED98]
gi|282893062|ref|ZP_06301296.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8117]
gi|282904143|ref|ZP_06312031.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus C160]
gi|282905970|ref|ZP_06313825.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908880|ref|ZP_06316698.1| RNA polymerase sigma factor RpoS [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911199|ref|ZP_06319001.1| RNA polymerase sigma factor RpoS [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914368|ref|ZP_06322154.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus M899]
gi|282916831|ref|ZP_06324589.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus D139]
gi|282919337|ref|ZP_06327072.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus C427]
gi|282920110|ref|ZP_06327835.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9765]
gi|282924662|ref|ZP_06332330.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus C101]
gi|282928194|ref|ZP_06335799.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A10102]
gi|283770637|ref|ZP_06343529.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus H19]
gi|283958325|ref|ZP_06375776.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024620|ref|ZP_06379018.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 132]
gi|293503442|ref|ZP_06667289.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510459|ref|ZP_06669165.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus M809]
gi|293530999|ref|ZP_06671681.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus M1015]
gi|294848592|ref|ZP_06789338.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9754]
gi|295406684|ref|ZP_06816489.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8819]
gi|295428139|ref|ZP_06820771.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296275817|ref|ZP_06858324.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MR1]
gi|297207720|ref|ZP_06924155.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297245734|ref|ZP_06929599.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8796]
gi|297590895|ref|ZP_06949533.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus MN8]
gi|300911801|ref|ZP_07129244.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus TCH70]
gi|304380850|ref|ZP_07363510.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|379021343|ref|YP_005298005.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus M013]
gi|384547794|ref|YP_005737047.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
ED133]
gi|384550388|ref|YP_005739640.1| RNA polymerase sigma-70 factor RpoD [Staphylococcus aureus subsp.
aureus JKD6159]
gi|384862163|ref|YP_005744883.1| RNA polymerase sigma-70 factor RpoD [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384864782|ref|YP_005750141.1| RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384867465|ref|YP_005747661.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus TCH60]
gi|384870102|ref|YP_005752816.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus T0131]
gi|385781846|ref|YP_005758017.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386729262|ref|YP_006195645.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
71193]
gi|386831171|ref|YP_006237825.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387143168|ref|YP_005731561.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
TW20]
gi|387150704|ref|YP_005742268.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus 04-02981]
gi|387602901|ref|YP_005734422.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Staphylococcus aureus subsp. aureus ST398]
gi|387780653|ref|YP_005755451.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
LGA251]
gi|404478912|ref|YP_006710342.1| RNA polymerase sigma factor [Staphylococcus aureus 08BA02176]
gi|415682363|ref|ZP_11447679.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CGS00]
gi|415686251|ref|ZP_11450388.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CGS01]
gi|415692679|ref|ZP_11454599.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CGS03]
gi|416840030|ref|ZP_11903349.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus O11]
gi|416845839|ref|ZP_11906240.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus O46]
gi|417649352|ref|ZP_12299156.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21189]
gi|417651232|ref|ZP_12300995.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21172]
gi|417797335|ref|ZP_12444531.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21305]
gi|417798948|ref|ZP_12446102.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21310]
gi|417801415|ref|ZP_12448507.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21318]
gi|417887943|ref|ZP_12532062.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21195]
gi|417889892|ref|ZP_12533971.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21200]
gi|417892422|ref|ZP_12536471.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21201]
gi|417896754|ref|ZP_12540697.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21235]
gi|417905424|ref|ZP_12549235.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21269]
gi|418276950|ref|ZP_12891704.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21178]
gi|418284177|ref|ZP_12896909.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21202]
gi|418285002|ref|ZP_12897702.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21209]
gi|418309094|ref|ZP_12920669.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21194]
gi|418310147|ref|ZP_12921697.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21331]
gi|418313154|ref|ZP_12924648.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21334]
gi|418316373|ref|ZP_12927811.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21340]
gi|418319485|ref|ZP_12930865.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21232]
gi|418424710|ref|ZP_12997824.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427704|ref|ZP_13000709.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS2]
gi|418430546|ref|ZP_13003457.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418433689|ref|ZP_13006281.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS4]
gi|418437184|ref|ZP_13008980.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440084|ref|ZP_13011785.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443102|ref|ZP_13014701.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS7]
gi|418446164|ref|ZP_13017638.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449178|ref|ZP_13020564.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS9]
gi|418451991|ref|ZP_13023325.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS10]
gi|418454985|ref|ZP_13026244.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418457863|ref|ZP_13029062.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418558923|ref|ZP_13123470.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21252]
gi|418562721|ref|ZP_13127178.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21262]
gi|418564891|ref|ZP_13129312.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21264]
gi|418566983|ref|ZP_13131348.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21272]
gi|418569540|ref|ZP_13133866.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21283]
gi|418574489|ref|ZP_13138658.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21333]
gi|418579486|ref|ZP_13143581.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418582488|ref|ZP_13146566.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418597229|ref|ZP_13160762.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21342]
gi|418600037|ref|ZP_13163511.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21343]
gi|418601023|ref|ZP_13164471.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21345]
gi|418640390|ref|ZP_13202622.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-3]
gi|418641670|ref|ZP_13203875.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-24]
gi|418648411|ref|ZP_13210455.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-88]
gi|418650482|ref|ZP_13212500.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-91]
gi|418652795|ref|ZP_13214758.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-99]
gi|418657655|ref|ZP_13219418.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-105]
gi|418662053|ref|ZP_13223607.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-122]
gi|418873264|ref|ZP_13427574.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875501|ref|ZP_13429757.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418878479|ref|ZP_13432714.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418881245|ref|ZP_13435462.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418884093|ref|ZP_13438286.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886826|ref|ZP_13440974.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418889376|ref|ZP_13443509.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418892291|ref|ZP_13446404.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418895324|ref|ZP_13449419.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418898195|ref|ZP_13452265.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901066|ref|ZP_13455122.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418903868|ref|ZP_13457909.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906506|ref|ZP_13460532.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418909413|ref|ZP_13463409.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG149]
gi|418912172|ref|ZP_13466153.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG547]
gi|418914659|ref|ZP_13468631.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418917458|ref|ZP_13471417.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418920642|ref|ZP_13474574.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418923243|ref|ZP_13477159.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418925821|ref|ZP_13479723.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418928911|ref|ZP_13482797.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418931866|ref|ZP_13485701.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418934531|ref|ZP_13488353.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418948541|ref|ZP_13500839.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-157]
gi|418952144|ref|ZP_13504186.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-160]
gi|418955676|ref|ZP_13507613.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-189]
gi|418978284|ref|ZP_13526085.1| RpoD [Staphylococcus aureus subsp. aureus DR10]
gi|418982567|ref|ZP_13530275.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418986233|ref|ZP_13533918.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1500]
gi|418988628|ref|ZP_13536300.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418991489|ref|ZP_13539150.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1096]
gi|418994287|ref|ZP_13541922.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG290]
gi|419773135|ref|ZP_14299146.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784708|ref|ZP_14310471.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-M]
gi|421148559|ref|ZP_15608219.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742655|ref|ZP_16796658.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422746146|ref|ZP_16800079.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424768978|ref|ZP_18196215.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CM05]
gi|424785396|ref|ZP_18212199.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus CN79]
gi|440707442|ref|ZP_20888141.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21282]
gi|440735012|ref|ZP_20914623.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443637651|ref|ZP_21121723.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21236]
gi|448740612|ref|ZP_21722588.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus KT/314250]
gi|448743077|ref|ZP_21724991.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus KT/Y21]
gi|60390420|sp|Q6G905.1|RPOD_STAAS RecName: Full=RNA polymerase sigma factor RpoD
gi|60390434|sp|Q6GGD8.1|RPOD_STAAR RecName: Full=RNA polymerase sigma factor RpoD
gi|60393872|sp|P0A0I8.1|RPOD_STAAM RecName: Full=RNA polymerase sigma factor RpoD
gi|60393873|sp|P0A0I9.1|RPOD_STAAW RecName: Full=RNA polymerase sigma factor RpoD
gi|60393874|sp|P0A0J0.1|RPOD_STAA8 RecName: Full=RNA polymerase sigma factor RpoD
gi|81694388|sp|Q5HFJ9.1|RPOD_STAAC RecName: Full=RNA polymerase sigma factor RpoD
gi|153069|gb|AAB59090.1| sigma factor [Staphylococcus aureus]
gi|14247332|dbj|BAB57723.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204682|dbj|BAB95378.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
MW2]
gi|49241939|emb|CAG40633.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244840|emb|CAG43300.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286140|gb|AAW38234.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus COL]
gi|82656695|emb|CAI81122.1| RNA polymerase sigma factor [Staphylococcus aureus RF122]
gi|87128228|gb|ABD22742.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202927|gb|ABD30737.1| RNA polymerase sigma factor, putative [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147741114|gb|ABQ49412.1| RNA polymerase, sigma 70 subunit, RpoD family [Staphylococcus
aureus subsp. aureus JH9]
gi|149946565|gb|ABR52501.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus JH1]
gi|150374476|dbj|BAF67736.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156722014|dbj|BAF78431.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368599|gb|ABX29570.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253724003|gb|EES92732.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253728729|gb|EES97458.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus TCH130]
gi|257275188|gb|EEV06675.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257281765|gb|EEV11902.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus E1410]
gi|257283937|gb|EEV14060.1| transcription initiation factor sigma plaC [Staphylococcus aureus
subsp. aureus M876]
gi|257787609|gb|EEV25949.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A9781]
gi|257840213|gb|EEV64677.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A9763]
gi|257843844|gb|EEV68238.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9719]
gi|257845610|gb|EEV69642.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A9635]
gi|257851005|gb|EEV74948.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8115]
gi|257857998|gb|EEV80887.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus A6224]
gi|257861768|gb|EEV84567.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A5948]
gi|257864268|gb|EEV87018.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A5937]
gi|259160860|gb|EEW45880.1| RNA polymerase sigma factor [Staphylococcus aureus 930918-3]
gi|259162806|gb|EEW47371.1| RNA polymerase sigma factor [Staphylococcus aureus D30]
gi|262075479|gb|ACY11452.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus ED98]
gi|269941051|emb|CBI49435.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
TW20]
gi|282313497|gb|EFB43892.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus C101]
gi|282317147|gb|EFB47521.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus C427]
gi|282319318|gb|EFB49670.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus D139]
gi|282321549|gb|EFB51874.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus M899]
gi|282324894|gb|EFB55204.1| RNA polymerase sigma factor RpoS [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327144|gb|EFB57439.1| RNA polymerase sigma factor RpoS [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331262|gb|EFB60776.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590001|gb|EFB95083.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A10102]
gi|282594458|gb|EFB99443.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9765]
gi|282595761|gb|EFC00725.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus C160]
gi|282764380|gb|EFC04506.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8117]
gi|283460784|gb|EFC07874.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus H19]
gi|283470839|emb|CAQ50050.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Staphylococcus aureus subsp. aureus ST398]
gi|283790474|gb|EFC29291.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285817243|gb|ADC37730.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus 04-02981]
gi|290920267|gb|EFD97333.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus M1015]
gi|291095108|gb|EFE25373.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466823|gb|EFF09343.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus M809]
gi|294824618|gb|EFG41041.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9754]
gi|294968431|gb|EFG44455.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8819]
gi|295128497|gb|EFG58131.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887737|gb|EFH26635.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297177385|gb|EFH36637.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A8796]
gi|297575781|gb|EFH94497.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus MN8]
gi|298694843|gb|ADI98065.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
ED133]
gi|300886047|gb|EFK81249.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus TCH70]
gi|302333237|gb|ADL23430.1| RNA polymerase sigma-70 factor RpoD [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302751392|gb|ADL65569.1| RNA polymerase sigma-70 factor RpoD [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340577|gb|EFM06511.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312437970|gb|ADQ77041.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
aureus subsp. aureus TCH60]
gi|312829949|emb|CBX34791.1| RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129839|gb|EFT85829.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CGS03]
gi|315195463|gb|EFU25850.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CGS00]
gi|315198744|gb|EFU29072.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140554|gb|EFW32408.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144091|gb|EFW35860.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus MRSA177]
gi|323440459|gb|EGA98171.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus O11]
gi|323443233|gb|EGB00851.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus O46]
gi|329314237|gb|AEB88650.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus T0131]
gi|329727416|gb|EGG63872.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21172]
gi|329728458|gb|EGG64895.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21189]
gi|334266827|gb|EGL85297.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21305]
gi|334275110|gb|EGL93411.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21310]
gi|334276864|gb|EGL95110.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21318]
gi|341840020|gb|EGS81540.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21235]
gi|341843700|gb|EGS84922.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21269]
gi|341855585|gb|EGS96429.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21200]
gi|341856972|gb|EGS97799.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21195]
gi|341857587|gb|EGS98399.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21201]
gi|344177755|emb|CCC88234.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830652|gb|AEV78630.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus M013]
gi|364522835|gb|AEW65585.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365165041|gb|EHM56871.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21202]
gi|365172013|gb|EHM62758.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21209]
gi|365173933|gb|EHM64362.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21178]
gi|365235245|gb|EHM76165.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21194]
gi|365236425|gb|EHM77314.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21334]
gi|365237604|gb|EHM78450.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21331]
gi|365240604|gb|EHM81376.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21232]
gi|365241057|gb|EHM81812.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21340]
gi|371973825|gb|EHO91173.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21262]
gi|371976028|gb|EHO93320.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21264]
gi|371976273|gb|EHO93563.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21252]
gi|371979216|gb|EHO96451.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21333]
gi|371982687|gb|EHO99835.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21272]
gi|371985669|gb|EHP02730.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21283]
gi|374395465|gb|EHQ66732.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21342]
gi|374395626|gb|EHQ66889.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21343]
gi|374400270|gb|EHQ71389.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21345]
gi|375014954|gb|EHS08625.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-3]
gi|375018125|gb|EHS11705.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-24]
gi|375020963|gb|EHS14470.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-99]
gi|375026324|gb|EHS19707.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-88]
gi|375027768|gb|EHS21126.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-91]
gi|375030135|gb|EHS23459.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-105]
gi|375036998|gb|EHS30052.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-122]
gi|375366455|gb|EHS70452.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-125]
gi|375369802|gb|EHS73663.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-160]
gi|375370762|gb|EHS74560.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-189]
gi|375371874|gb|EHS75634.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-157]
gi|377694601|gb|EHT18966.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695130|gb|EHT19494.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377697513|gb|EHT21868.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377702463|gb|EHT26785.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377704277|gb|EHT28587.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377704848|gb|EHT29157.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377710898|gb|EHT35136.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377713044|gb|EHT37257.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377714428|gb|EHT38629.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377717721|gb|EHT41896.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377722429|gb|EHT46555.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG547]
gi|377723611|gb|EHT47736.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377725779|gb|EHT49892.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377730585|gb|EHT54652.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377730988|gb|EHT55046.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377735202|gb|EHT59238.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377738823|gb|EHT62832.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742883|gb|EHT66868.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377744084|gb|EHT68062.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG290]
gi|377744890|gb|EHT68867.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377750632|gb|EHT74570.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377752060|gb|EHT75984.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG149]
gi|377752884|gb|EHT76802.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIG1524]
gi|377758161|gb|EHT82049.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377761230|gb|EHT85106.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|377763411|gb|EHT87267.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377764368|gb|EHT88221.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377769573|gb|EHT93341.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC93]
gi|377770625|gb|EHT94386.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus CIGC128]
gi|379993900|gb|EIA15345.1| RpoD [Staphylococcus aureus subsp. aureus DR10]
gi|383363918|gb|EID41244.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus IS-M]
gi|383972959|gb|EID88980.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CO-23]
gi|384230555|gb|AFH69802.1| RpoD [Staphylococcus aureus subsp. aureus 71193]
gi|385196563|emb|CCG16192.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387717992|gb|EIK05987.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS2]
gi|387718286|gb|EIK06270.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387719489|gb|EIK07434.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS1]
gi|387724913|gb|EIK12544.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS4]
gi|387727172|gb|EIK14704.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS5]
gi|387730234|gb|EIK17641.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS6]
gi|387735302|gb|EIK22431.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS8]
gi|387736778|gb|EIK23866.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS7]
gi|387736941|gb|EIK24027.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS9]
gi|387744872|gb|EIK31636.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS10]
gi|387745038|gb|EIK31800.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387746631|gb|EIK33360.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus VRS11b]
gi|394331702|gb|EJE57785.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348369|gb|EJU83361.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus CM05]
gi|404440401|gb|AFR73594.1| RNA polymerase sigma factor [Staphylococcus aureus 08BA02176]
gi|408423682|emb|CCJ11093.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
ST228]
gi|408425672|emb|CCJ13059.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
ST228]
gi|408427659|emb|CCJ15022.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
ST228]
gi|408429648|emb|CCJ26813.1| RNA polymerase sigma factor [Staphylococcus aureus subsp. aureus
ST228]
gi|408431635|emb|CCJ18950.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus ST228]
gi|408433629|emb|CCJ20914.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus ST228]
gi|408435621|emb|CCJ22881.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus ST228]
gi|408437605|emb|CCJ24848.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus ST228]
gi|421956806|gb|EKU09135.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus CN79]
gi|436431107|gb|ELP28461.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436506198|gb|ELP42037.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21282]
gi|443405222|gb|ELS63830.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21236]
gi|445548579|gb|ELY16829.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus KT/314250]
gi|445563764|gb|ELY19921.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus KT/Y21]
Length = 368
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|258446806|ref|ZP_05694960.1| transcription initiation factor sigma plaC [Staphylococcus aureus
A6300]
gi|257854381|gb|EEV77330.1| transcription initiation factor sigma plaC [Staphylococcus aureus
A6300]
Length = 368
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|258437393|ref|ZP_05689377.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9299]
gi|257848598|gb|EEV72586.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus A9299]
Length = 368
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 198/309 (64%), Gaps = 4/309 (1%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 5 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 63
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+
Sbjct: 64 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQ 123
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
RG EKFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP H+ E ++K+ ++QL +
Sbjct: 124 RGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQ 183
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAED 444
GR E+A A L+ ++ L + P SLD ++G NQ+ + +++ + + T E+
Sbjct: 184 LGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELGDLL-ETDCTTPEE 242
Query: 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504
++ M+ D++++LD L ++RQV+ R+GLEDG++ TL IG+ + +SRER+RQ+E
Sbjct: 243 FTLQASMRRDIDRLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLERE 302
Query: 505 AFRKLKNKK 513
A L+ +
Sbjct: 303 ALHTLRQAR 311
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 182/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P G+ R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------GIHHRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 169/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRELAEVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ + GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQQLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGNDEEAPLGDFIEDAEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRAYA 318
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 188/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q + L+ R L P+ +WA AAG+ EL + ++ G L
Sbjct: 23 LLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISVDELTQAMDAGDL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPLKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQKLGRAATVAELAEEVKLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L ++P SLD +IG NQ+ +++ DP ++ ED + +++DL++++ L P+
Sbjct: 203 RDYLEKSRSPLSLDLRIGDNQDTNLGDLLEDP-GQSPEDYATQSLLRKDLDRLMAELTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V+ RFGL+DG+ TL +IGE++ +SRER+RQIE A +L+ ++
Sbjct: 262 QQRVLHLRFGLDDGKNMTLAKIGEMLSISRERVRQIEREALTRLRKRQ 309
>gi|417653445|ref|ZP_12303176.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21193]
gi|417898064|ref|ZP_12541990.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21259]
gi|417901002|ref|ZP_12544879.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21266]
gi|418321373|ref|ZP_12932719.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus VCU006]
gi|329733136|gb|EGG69473.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21193]
gi|341846161|gb|EGS87358.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21266]
gi|341849566|gb|EGS90709.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21259]
gi|365225605|gb|EHM66848.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus VCU006]
Length = 314
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 65 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 124
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 125 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 184
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 185 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 244
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 245 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 304
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 305 RSKRLKDF 312
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 161/233 (69%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA
Sbjct: 86 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQA 145
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ +++++ GR +EE+AE +G+ +++++ +L
Sbjct: 146 ITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLL 205
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLD +G ++ + I D EA +AE+ +I + + D+ VL TL+ RE+QV
Sbjct: 206 EHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQV 265
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N R L YA
Sbjct: 266 IRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSYA 318
>gi|239637627|ref|ZP_04678599.1| RNA polymerase sigma factor RpoD [Staphylococcus warneri L37603]
gi|417643250|ref|ZP_12293310.1| RNA polymerase sigma factor RpoD [Staphylococcus warneri VCU121]
gi|445059539|ref|YP_007384943.1| RNA polymerase sigma factor RpoD [Staphylococcus warneri SG1]
gi|239596845|gb|EEQ79370.1| RNA polymerase sigma factor RpoD [Staphylococcus warneri L37603]
gi|330686029|gb|EGG97652.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU121]
gi|443425596|gb|AGC90499.1| RNA polymerase sigma factor RpoD [Staphylococcus warneri SG1]
Length = 367
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 118 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 177
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 178 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 237
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 238 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 297
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 298 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 357
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 358 RSKRLKDF 365
>gi|319892618|ref|YP_004149493.1| RNA polymerase sigma factor RpoD [Staphylococcus pseudintermedius
HKU10-03]
gi|386319173|ref|YP_006015336.1| RNA polymerase sigma factor SigA [Staphylococcus pseudintermedius
ED99]
gi|317162314|gb|ADV05857.1| RNA polymerase sigma factor RpoD [Staphylococcus pseudintermedius
HKU10-03]
gi|323464344|gb|ADX76497.1| RNA polymerase sigma factor SigA [Staphylococcus pseudintermedius
ED99]
Length = 369
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 120 ELAKRIEQGDEVAKARLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 179
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 180 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 239
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 240 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 299
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 300 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 359
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 360 RSKRLKDF 367
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 196/328 (59%), Gaps = 19/328 (5%)
Query: 201 KRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
KRP + E D +D +R + LL A +E++L+ I+ L + VL+
Sbjct: 14 KRPPMTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIETGLYA---KHVLAT 70
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
R + V +R+L + + G + ++ +N+RLV+S+AK Y G GM L D
Sbjct: 71 R----------KRLSAVKKRDLAQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLD 120
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 121 LIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL 180
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVI 434
+++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++ + I
Sbjct: 181 ARIKRELHQQLGREATDDELAAESGIPAEKIADLLDHSRDPVSLDMPVGTDEEAPLGDFI 240
Query: 435 ADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVS 494
D EA +AE+ +I + D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG L G+S
Sbjct: 241 EDAEATSAENAVIAGLLHSDVRTVLGTLDEREQQVIRMRFGLDDGQPRTLDQIGRLFGLS 300
Query: 495 RERIRQIESSAFRKLKNKKRTKHLMQYA 522
RER+RQIE KL++ R + L YA
Sbjct: 301 RERVRQIEREVMVKLRHGDRAERLRAYA 328
>gi|358061045|ref|ZP_09147729.1| RNA polymerase sigma factor RpoD [Staphylococcus simiae CCM 7213]
gi|357256498|gb|EHJ06862.1| RNA polymerase sigma factor RpoD [Staphylococcus simiae CCM 7213]
Length = 368
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 198/309 (64%), Gaps = 4/309 (1%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 11 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 69
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+
Sbjct: 70 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQ 129
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
RG EKFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP H+ E ++K+ ++QL +
Sbjct: 130 RGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQ 189
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAED 444
GR E+A A L+ ++ L + P SLD ++G NQ+ + +++ + + T E+
Sbjct: 190 LGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELGDLL-ETDCTTPEE 248
Query: 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504
++ M+ D++++LD L ++RQV+ R+GLEDG++ TL IG+ + +SRER+RQ+E
Sbjct: 249 FTLQASMRRDIDRLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLERE 308
Query: 505 AFRKLKNKK 513
A L+ +
Sbjct: 309 ALHTLRQAR 317
>gi|242373866|ref|ZP_04819440.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis M23864:W1]
gi|242348420|gb|EES40022.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis M23864:W1]
Length = 368
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +++ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKKIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 171/247 (69%), Gaps = 1/247 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A+ G +++ +L + K SL+ IG +++ + +AD + + ++ M
Sbjct: 269 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 328
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+E+LEKVL TL+PRE V+R R+GL DG+ KTL+E+G+ V+RERIRQIE A RKL++
Sbjct: 329 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 388
Query: 512 KKRTKHL 518
R+K+L
Sbjct: 389 PSRSKYL 395
>gi|242242833|ref|ZP_04797278.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis W23144]
gi|418630560|ref|ZP_13193041.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU128]
gi|420174675|ref|ZP_14681123.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM061]
gi|420192312|ref|ZP_14698172.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM023]
gi|242233734|gb|EES36046.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
epidermidis W23144]
gi|374837750|gb|EHS01313.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
VCU128]
gi|394244579|gb|EJD89914.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM061]
gi|394261523|gb|EJE06320.1| RNA polymerase sigma factor RpoD [Staphylococcus epidermidis
NIHLM023]
Length = 368
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +++ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKKIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIADGEV 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P E+A L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + ED +++ + DLE +++ L P+
Sbjct: 217 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEDFVMQSSLSNDLEVLMEQLTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V+ RFGL DG+ TL IGE++ +SRER+RQIE A KL+ K
Sbjct: 276 QKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALTKLRKSK 323
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 183/321 (57%), Gaps = 29/321 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA+EE M++ AG + KLE A
Sbjct: 157 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEASQKLE-------------------A 197
Query: 267 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
A G + R L R G+ K +I++N+RL +SIAK Y G GM DL+QEG
Sbjct: 198 ADNGEIELTRAEMRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGN 257
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q
Sbjct: 258 LGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQ 317
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAE 440
L + GR P EE+ E G++ R+ + + P SL+ IG ++ + + I D A
Sbjct: 318 LLQDLGRDPTPEEIGEEMGITADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSSAV 377
Query: 441 TAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 500
+ ++E LE+VLD+L RER+V+++RFGLEDG +TL+E+G GV+RERIRQ
Sbjct: 378 APPEAASDSMLREQLEQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQ 437
Query: 501 IESSAFRKLKNKKRTKHLMQY 521
IES KL++ R+ L Y
Sbjct: 438 IESKTLAKLRHPSRSGRLKDY 458
>gi|223044379|ref|ZP_03614413.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Staphylococcus capitis SK14]
gi|417907968|ref|ZP_12551735.1| RNA polymerase sigma factor RpoD [Staphylococcus capitis VCU116]
gi|222442248|gb|EEE48359.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Staphylococcus capitis SK14]
gi|341595055|gb|EGS37733.1| RNA polymerase sigma factor RpoD [Staphylococcus capitis VCU116]
Length = 368
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +++ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKKIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 37 LLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELAQELELTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + E+ +++ + DL++++ L P+
Sbjct: 217 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLDRLMGDLTPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL DG+ TL +IGE++ +SRER+RQIE A KL+ K
Sbjct: 276 QREVITLRFGLTDGQALTLAKIGEILNISRERVRQIEREALTKLRKSK 323
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/303 (39%), Positives = 191/303 (63%), Gaps = 3/303 (0%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R YLR LLT EE+ + +Q + LE RE+ ++ G PT QWA AA
Sbjct: 9 DPVRSYLREIGRVP-LLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAAR 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ +REL + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 ISRRELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L GR
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQARGRDAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
E+AE L+ K++ L + P SLD ++G NQ+ + +++ D + + ED
Sbjct: 188 IAELAEELDLTPKQVREYLERARQPLSLDLRVGDNQDTELGDLLED-DGPSPEDFATHSS 246
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++ DLE +++ L ++++V+ RFGL DG+ TL +IG + +SRER+RQIE A KL+
Sbjct: 247 LQFDLEILMEDLTTQQKEVIALRFGLTDGQPLTLAKIGCRLNISRERVRQIEREALSKLR 306
Query: 511 NKK 513
+K
Sbjct: 307 KRK 309
>gi|257430984|ref|ZP_05607364.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 68-397]
gi|257278414|gb|EEV09050.1| RNA polymerase sigma factor rpoD [Staphylococcus aureus subsp.
aureus 68-397]
Length = 342
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 93 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 152
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 153 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 212
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 213 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 272
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 273 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 332
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 333 RSKRLKDF 340
>gi|385784294|ref|YP_005760467.1| RNA polymerase sigma factor [Staphylococcus lugdunensis N920143]
gi|418413970|ref|ZP_12987186.1| RNA polymerase sigma factor rpoD [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|339894550|emb|CCB53832.1| RNA polymerase sigma factor [Staphylococcus lugdunensis N920143]
gi|410877608|gb|EKS25500.1| RNA polymerase sigma factor rpoD [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 368
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|289550668|ref|YP_003471572.1| RNA polymerase sigma factor RpoD [Staphylococcus lugdunensis
HKU09-01]
gi|315658163|ref|ZP_07911035.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
lugdunensis M23590]
gi|418635282|ref|ZP_13197661.1| RNA polymerase sigma factor RpoD [Staphylococcus lugdunensis
VCU139]
gi|289180200|gb|ADC87445.1| RNA polymerase sigma factor RpoD [Staphylococcus lugdunensis
HKU09-01]
gi|315496492|gb|EFU84815.1| DNA-directed RNA polymerase sigma subunit RpoD [Staphylococcus
lugdunensis M23590]
gi|374842004|gb|EHS05456.1| RNA polymerase sigma factor RpoD [Staphylococcus lugdunensis
VCU139]
Length = 368
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|314933733|ref|ZP_07841098.1| RNA polymerase sigma factor RpoD [Staphylococcus caprae C87]
gi|313653883|gb|EFS17640.1| RNA polymerase sigma factor RpoD [Staphylococcus caprae C87]
Length = 368
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +++ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 119 ELAKKIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|260655747|ref|ZP_05861216.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
gi|260629363|gb|EEX47557.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
Length = 969
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 165/247 (66%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G KD++I +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +
Sbjct: 721 LAKRVEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEGNLGLIRAVEKFDYRR 780
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR P++EE+
Sbjct: 781 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKMVRISRQLVQKLGREPSDEEI 840
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
A + +R+ + + P SL+ IG ++ + + I D + ED+ ++E
Sbjct: 841 AAEMKIEPERVEEIKRISQMPVSLETPIGEEEDSQLGDFIEDRSLPSPEDVAADNLLQEQ 900
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+E++L+ L+ RER+V+R+RFGLEDGR TL+E+G GV+RERIRQIE+ A RKL++ R
Sbjct: 901 IEEMLNALSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSR 960
Query: 515 TKHLMQY 521
+K L +
Sbjct: 961 SKKLRDF 967
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 171/247 (69%), Gaps = 1/247 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A+ G +++ +L + K SL+ IG +++ + +AD + + ++ M
Sbjct: 269 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 328
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+E+LEKVL TL+PRE V+R R+GL DG+ KTL+E+G+ V+RERIRQIE A RKL++
Sbjct: 329 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 388
Query: 512 KKRTKHL 518
R+K+L
Sbjct: 389 PSRSKYL 395
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 185/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q + L +++ L E+ G PT++QWA A + +EL+ L G
Sbjct: 23 LLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A+++L + GR E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMATIAELAEELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD K+G N + + +++ D ++ ED +++DL +++ L P+
Sbjct: 203 RDYLEKSRQPISLDVKVGDNNDTELGDMLVDM-GQSPEDYATSSSLRKDLSRLMSELTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V+ RFGL DG+ TL +IG + +SRER+RQIE A KL+ +K
Sbjct: 262 QQEVISLRFGLRDGKPLTLAKIGTFLSISRERVRQIEREALTKLRQRK 309
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 171/247 (69%), Gaps = 1/247 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 200
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 201 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 260
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A+ G +++ +L + K SL+ IG +++ + +AD + + ++ M
Sbjct: 261 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 320
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+E+LEKVL TL+PRE V+R R+GL DG+ KTL+E+G+ V+RERIRQIE A RKL++
Sbjct: 321 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 380
Query: 512 KKRTKHL 518
R+K+L
Sbjct: 381 PSRSKYL 387
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 169/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R YA
Sbjct: 309 ERADQPAVYA 318
>gi|1710683|sp|P52328.1|RPSD2_BACSP RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|149623|gb|AAA25264.1| RNA polymerase sigma-subunit [Leptospira borgpetersenii]
Length = 377
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 166/251 (66%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRIMNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A LS++++ ++ + P SL+ IG + + I D EA T D +
Sbjct: 245 PEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYEL 304
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 305 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 365 HPSRSKRLKDF 375
>gi|424844271|ref|ZP_18268882.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
gi|363985709|gb|EHM12539.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
Length = 805
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 165/247 (66%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G KD++I +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +
Sbjct: 557 LAKRVEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEGNLGLIRAVEKFDYRR 616
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR P++EE+
Sbjct: 617 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKMVRISRQLVQKLGREPSDEEI 676
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
A + +R+ + + P SL+ IG ++ + + I D + ED+ ++E
Sbjct: 677 AAEMKIEPERVEEIKRISQMPVSLETPIGEEEDSQLGDFIEDRSLPSPEDVAADNLLQEQ 736
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+E++L+ L+ RER+V+R+RFGLEDGR TL+E+G GV+RERIRQIE+ A RKL++ R
Sbjct: 737 IEEMLNALSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSR 796
Query: 515 TKHLMQY 521
+K L +
Sbjct: 797 SKKLRDF 803
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 170/247 (68%), Gaps = 1/247 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 134 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 193
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y + G P+
Sbjct: 194 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKYGEEPSV 253
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A+ G +++ +L + K SL+ IG +++ + +AD + + ++ M
Sbjct: 254 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADESVPSPKKEAMRMLM 313
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+E+LEKVL TL+PRE V+R R+GL DG+ KTL+E+G+ V+RERIRQIE A RKL++
Sbjct: 314 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 373
Query: 512 KKRTKHL 518
R+K+L
Sbjct: 374 PSRSKYL 380
>gi|443639904|ref|ZP_21123904.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21196]
gi|443406179|gb|ELS64763.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus 21196]
Length = 368
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHLS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|392972231|ref|ZP_10337623.1| RNA polymerase sigma factor RpoD [Staphylococcus equorum subsp.
equorum Mu2]
gi|392509944|emb|CCI60926.1| RNA polymerase sigma factor RpoD [Staphylococcus equorum subsp.
equorum Mu2]
Length = 368
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEKGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|302525710|ref|ZP_07278052.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434605|gb|EFL06421.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 317
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 187/317 (58%), Gaps = 23/317 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA +E++L+ I+ + FAQ
Sbjct: 18 ADLVRVYLNGIGKTALLTAADEVELAKRIE------------------AGVFAQHMLDTA 59
Query: 271 VD-----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D ++ELR + G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 60 EDLTPQRRKELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 119
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD SKGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ R+ L+ +
Sbjct: 120 AVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIRRDLHQQL 179
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR +EE++ +G+ + ++ +L + P SLD +G ++ + I D EA AE
Sbjct: 180 GRDATHEELSAESGIPVHKISDLLDQSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESA 239
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+I +++DL +VL TL+ RE+ V+R R+GL+DG+ +TL +IG+ G+SRER+RQIE
Sbjct: 240 VISGLLQDDLRRVLATLDDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREV 299
Query: 506 FRKLKNKKRTKHLMQYA 522
KL+ +R L YA
Sbjct: 300 MAKLRQGERADRLRAYA 316
>gi|407983270|ref|ZP_11163927.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
gi|407375163|gb|EKF24122.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
Length = 319
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 167/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 RRELEEVVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ R++L+ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQTLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAAESGIPVDKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDAEAMSAENAVIAELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 249 TDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|403046444|ref|ZP_10901913.1| RNA polymerase sigma factor RpoD [Staphylococcus sp. OJ82]
gi|402763140|gb|EJX17233.1| RNA polymerase sigma factor RpoD [Staphylococcus sp. OJ82]
Length = 368
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEKGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 171/247 (69%), Gaps = 1/247 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A+ G +++ +L + K SL+ IG +++ + +AD + + ++ M
Sbjct: 269 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 328
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+E+LEKVL TL+PRE V+R R+GL DG+ KTL+E+G+ V+RERIRQIE A RKL++
Sbjct: 329 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 388
Query: 512 KKRTKHL 518
R+K+L
Sbjct: 389 PSRSKYL 395
>gi|374608203|ref|ZP_09681002.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553735|gb|EHP80322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 319
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 168/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGRDATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAEESGIPAEKIADLLSHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R + L YA
Sbjct: 309 ERAERLRSYA 318
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE++ +Q L +RE L+ + P +WAAAA ++ EL + G
Sbjct: 23 LLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAEGET 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTATELAQELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ D A + ED +++ + DLE+++ L P+
Sbjct: 203 QECLEKARLPLSLDLRLGDNYDTELGELLEDTGA-SPEDFVMQSSLSYDLERMMAELTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V++ RFGL DG+ TL +IGE++ +SRER+RQIE A KL+ K
Sbjct: 262 QKEVIKLRFGLLDGQSLTLAKIGEILNISRERVRQIEREALTKLRKSK 309
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 128/307 (41%), Positives = 188/307 (61%), Gaps = 5/307 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y + S +RL EE+ L+ I LL LE + E L E+ SP +WA A + + E
Sbjct: 192 YYKQVNSFARL-HPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKMSKWE 250
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L RL G K++M+T+N+RLV S+AK YQ G++ QDL+QEG GL+R EKFD +KG
Sbjct: 251 LCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKG 310
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP-NNEEV 394
+KFSTY WWI+QA+ +++ D SR +RLP ++ E ++K+ KQ+ E P EEV
Sbjct: 311 YKFSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIECS--PLTAEEV 368
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
A ++ ++L ++ + SLD I +N+ E+I ET + + ++ED
Sbjct: 369 ATRMEMTTEKLQFIIECAQETLSLDYPINKGENIIYKEMIK-FNGETPTKYVFENCLQED 427
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+E VL TL RER V++ RFGL+DG+ KTL+EIG+ ++RERIRQIE+ A RKL++ KR
Sbjct: 428 VESVLKTLTERERNVLQMRFGLDDGQEKTLKEIGDTFNLTRERIRQIEAKALRKLEDPKR 487
Query: 515 TKHLMQY 521
L +Y
Sbjct: 488 NHILREY 494
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 185/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE+L+ + G PT +WA A ++ EL + + +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIADAEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR P+ E+A+ L+ +++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSVAELAQELELTSRQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + E+ + + + DLE+++ L P+
Sbjct: 203 REYLEKARVPLSLDIRLGDNYDTELGEMLEDPGA-SPEEFVTQSSLSGDLERLMAELTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL DG TL +IGE++ +SRER+RQIE A KL+ K
Sbjct: 262 QREVISLRFGLNDGHALTLAKIGEILNISRERVRQIEREALSKLRKSK 309
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 164/240 (68%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 83 GNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ GR ++EE+AE +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREASDEELAEESGIPV 202
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
+++ +L + P SLD +G ++ + I D EA +AE+ +I + + D+ VL TL
Sbjct: 203 EKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAELLHSDVRSVLATL 262
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ RE+QV+R R+GL+DG+ +TL +IG+L G+SRER+RQIE KL++ R + L YA
Sbjct: 263 DEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDRAERLRSYA 322
>gi|410582688|ref|ZP_11319794.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
gi|410505508|gb|EKP95017.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
Length = 432
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 167/248 (67%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K K+I +N+RLV+SIAK Y G GM DL+QEG GL++ AEKFD
Sbjct: 183 ELAKRIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYR 242
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 243 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEE 302
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ G+ +++ ++ + P SL+ IG ++ + I D +A + + ++E
Sbjct: 303 IAKEMGIEPEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLLLRE 362
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VL TL RE++V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 363 QLEDVLHTLTDREQKVLRLRFGLDDGRQRTLEEVGQIFGVTRERIRQIEAKALRKLRHPS 422
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 423 RSKKLKDY 430
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 319
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 167/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|433647324|ref|YP_007292326.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297101|gb|AGB22921.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 319
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 167/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 163/240 (67%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 83 GNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ GR +EE+AE +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREATDEELAEESGIPV 202
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
+++ +L + P SLD +G ++ + I D EA +AE+ +I + + D+ VL TL
Sbjct: 203 EKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAELLHSDVRSVLATL 262
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ RE+QV+R R+GL+DG+ +TL +IG+L G+SRER+RQIE KL++ R + L YA
Sbjct: 263 DEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDRAERLRSYA 322
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 192/340 (56%), Gaps = 29/340 (8%)
Query: 193 KSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLE 246
KS S RKR + V DP+R LLTA EE M++ AG+ + +LE
Sbjct: 85 KSKVRSVRKRNADASVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELE 144
Query: 247 GLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLN----YGILCKDKMITSNIRLVISI 301
A G++ +R +RRL GI K ++I +N+RLV+SI
Sbjct: 145 K------------------AEDEGIELERREKRRLGRIEQVGIDAKQQLIEANLRLVVSI 186
Query: 302 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361
AK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTI
Sbjct: 187 AKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTI 246
Query: 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQK 421
R+P HMVE ++ ++QL E GR P+ EE+ + GL +R+ + + P SL+
Sbjct: 247 RIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKISQEPVSLETP 306
Query: 422 IGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRM 481
IG ++ + + I D A D ++E L KVLD L RER+V+ RFGLEDG
Sbjct: 307 IGEEEDSQLGDFIEDDAAVVPPDAASFSMLQEQLSKVLDGLAERERKVISLRFGLEDGHP 366
Query: 482 KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+TL+E+G GV+RERIRQIES KL++ R+ L Y
Sbjct: 367 RTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDY 406
>gi|359145132|ref|ZP_09178962.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Streptomyces sp. S4]
Length = 357
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 166/260 (63%), Gaps = 1/260 (0%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 97 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNL 155
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++ L
Sbjct: 156 GLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRAL 215
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 441
E GR P EEV E GLS +++ VL + P SL +G ++ ++I D +A +
Sbjct: 216 LQEAGREPGAEEVGERLGLSAEKVEEVLRLAREPISLHAPVGGEDDVFLGDLIEDADAAS 275
Query: 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501
+ +++ L+ VL TL RERQVV+ R+G +DGR +TL+EIG L GV+RER+RQI
Sbjct: 276 PAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQI 335
Query: 502 ESSAFRKLKNKKRTKHLMQY 521
ES R+L+ L Y
Sbjct: 336 ESKTLRRLREHTAAGQLRGY 355
>gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor SigB [Actinosynnema mirum DSM 43827]
gi|255919933|gb|ACU35444.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 330
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 162/248 (65%)
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
ELR + G+ K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +K
Sbjct: 82 ELRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTK 141
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR NEE+
Sbjct: 142 GFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNEEL 201
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
A +GLS ++ +L + P SLD +G ++ + I D +A AE +I +++D
Sbjct: 202 AAESGLSPTKVSDLLDHARDPVSLDMPVGAEEDAPLGDFIEDSDATDAESAVISGLLQDD 261
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
L +VL TL RE+ V+R R+GLEDG+ +TL +IG+ G+SRER+RQIE KL+ +R
Sbjct: 262 LRRVLATLEQREQAVIRLRYGLEDGQPRTLDQIGKQFGLSRERVRQIEREVMSKLRQGER 321
Query: 515 TKHLMQYA 522
L YA
Sbjct: 322 AAKLRAYA 329
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 183/318 (57%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
S V+ DP+R LLTA EE+ L+ ++ LK + E+L E
Sbjct: 295 STDAVNIDDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSE 354
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+ + L+ G K K+ +N+RLV+SIAK Y G GM DL+QEG GL
Sbjct: 355 EDMMNLEAQIKILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 414
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
++ EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL
Sbjct: 415 IKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ 474
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAE 443
E GR P+ EE+A + R+ +L + P SL+ IG ++ + I D A
Sbjct: 475 ELGREPSPEEIAREMETTPDRVREILKISQEPVSLETPIGEEEDSHLGDFIQDENAPVPA 534
Query: 444 DLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503
+ +KE L +VLDTL RER+V+ RFGLEDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 535 EAATFTLLKEQLNEVLDTLTERERKVLILRFGLEDGRGRTLEEVGKEFNVTRERIRQIEA 594
Query: 504 SAFRKLKNKKRTKHLMQY 521
A RKL++ R++ L Y
Sbjct: 595 KALRKLRHPSRSRKLKDY 612
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 203/328 (61%), Gaps = 10/328 (3%)
Query: 187 ANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKL 245
AN+ S+ S + + P+ D +R YLR LLT +E+ +Q L
Sbjct: 5 ANLASLNSSAMKTAQTPT-------DIVRTYLREIGKVP-LLTHEQEIYYGKQVQKSTAL 56
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
++ L++ P+ +WA AA +D +EL R L G + K KM+ +N+RLV+S+AK Y
Sbjct: 57 YETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEIAKRKMVEANLRLVVSVAKKY 116
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
++L DL+QEG G+ RG EKFD SKG++FSTYA+WWI+QA+ +++++++RTIRLP
Sbjct: 117 IKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
H+ E ++K+A++ L GR P+ E+A+ ++ K++ L + P SLD ++G N
Sbjct: 177 HITEKLNKIKKAQRYLSQTLGRSPSIAELAQELEITPKQVRDCLEKARLPLSLDLRLGDN 236
Query: 426 QNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQ 485
+ + E++ DP A + ED +I+ + +L++++ L P++R+V++ RFGL DG+ TL
Sbjct: 237 YDTELGEMLEDPGA-SPEDYVIQSSLSSELDRMMTHLTPQQREVIKLRFGLVDGQSMTLA 295
Query: 486 EIGELMGVSRERIRQIESSAFRKLKNKK 513
IGE++ +SRER+RQIE A +L+ K
Sbjct: 296 RIGEVLNISRERVRQIEREALTRLRRCK 323
>gi|389815818|ref|ZP_10207066.1| RNA polymerase sigma factor RpoD [Planococcus antarcticus DSM
14505]
gi|388465541|gb|EIM07857.1| RNA polymerase sigma factor RpoD [Planococcus antarcticus DSM
14505]
Length = 384
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKGFKFSTYA WW
Sbjct: 147 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYATWW 206
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L +++
Sbjct: 207 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLLPEKV 266
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A++ D + +KE LE VLDTL R
Sbjct: 267 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSDAQSPSDHAAYELLKEQLEDVLDTLTDR 326
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 327 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 382
>gi|229916320|ref|YP_002884966.1| RpoD subfamily RNA polymerase sigma-70 subunit [Exiguobacterium sp.
AT1b]
gi|229467749|gb|ACQ69521.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Exiguobacterium
sp. AT1b]
Length = 364
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 167/251 (66%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 112 DETELAKRIEQGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 171
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+
Sbjct: 172 DYMKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPS 231
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ L+ +++ +L + P SL+ IG + + I D +A +D +
Sbjct: 232 PEEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAAAYEL 291
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 292 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 351
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 352 HPSRSKRLKDF 362
>gi|224476669|ref|YP_002634275.1| RNA polymerase sigma factor RpoD [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421276|emb|CAL28090.1| RNA polymerase sigma factor SigA [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 369
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 120 ELAKRIEQGDEVAKARLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 179
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 180 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 239
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D E ++ D + +KE
Sbjct: 240 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHAAYELLKE 299
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 300 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 359
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 360 RSKRLKDF 367
>gi|404417240|ref|ZP_10999044.1| RNA polymerase sigma factor RpoD [Staphylococcus arlettae CVD059]
gi|403490438|gb|EJY95979.1| RNA polymerase sigma factor RpoD [Staphylococcus arlettae CVD059]
Length = 368
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEDGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|393201582|ref|YP_006463424.1| DNA-directed RNA polymerase, sigma subunit [Solibacillus silvestris
StLB046]
gi|406664445|ref|ZP_11072220.1| Sigma-A [Bacillus isronensis B3W22]
gi|327440913|dbj|BAK17278.1| DNA-directed RNA polymerase, sigma subunit [Solibacillus silvestris
StLB046]
gi|405387293|gb|EKB46717.1| Sigma-A [Bacillus isronensis B3W22]
Length = 375
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA++ D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|21449377|gb|AAM54109.1|AF453501_35 RNA polymerase sigma factor [Actinosynnema pretiosum subsp.
auranticum]
Length = 348
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 190/332 (57%), Gaps = 17/332 (5%)
Query: 191 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
+K +T RR + D + YL+A RLLTA++E++L+ ++ L E L +
Sbjct: 31 DIKLAATLRRDAEAANAADSTRA--YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLD 87
Query: 251 VL-SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ + R P ELRR + G KD ++ +N+RLV+SIAK Y G G
Sbjct: 88 LPPAARGSRRPV-------------ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKG 134
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L D++QEG GLVR EKFD +KGFKFSTYA WWI+QA+ ++L+DQSRTIRLP HMVE
Sbjct: 135 MALLDVIQEGNLGLVRAVEKFDYAKGFKFSTYATWWIRQAITRALADQSRTIRLPVHMVE 194
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ + L NGR EEVA ++ +++ + + P SLDQ IG +
Sbjct: 195 VVTKLARIERDLLHRNGREATAEEVAVELDVTPEKVVELRQHARTPVSLDQTIGAEADTS 254
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
++IAD A + + + DL VL+TL PRE VVR R+G DG + TL E+G
Sbjct: 255 IGDLIADENAVAPLEAVSSALLSADLRAVLETLTPREAGVVRMRYGFPDGVLHTLDEVGR 314
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ GV+RERIRQIES KL++ R++ L Y
Sbjct: 315 VYGVTRERIRQIESRTMAKLQHPARSRGLEGY 346
>gi|323490072|ref|ZP_08095293.1| RNA polymerase sigma factor RpoD [Planococcus donghaensis MPA1U2]
gi|323396368|gb|EGA89193.1| RNA polymerase sigma factor RpoD [Planococcus donghaensis MPA1U2]
Length = 384
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKGFKFSTYA WW
Sbjct: 147 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYATWW 206
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L +++
Sbjct: 207 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEEIGEEMDLLPEKV 266
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A++ D + +KE LE VLDTL R
Sbjct: 267 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSDAQSPSDHAAYELLKEQLEDVLDTLTDR 326
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 327 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 382
>gi|375090808|ref|ZP_09737120.1| RNA polymerase sigma factor rpoD [Facklamia languida CCUG 37842]
gi|374564970|gb|EHR36249.1| RNA polymerase sigma factor rpoD [Facklamia languida CCUG 37842]
Length = 379
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 184/321 (57%), Gaps = 40/321 (12%)
Query: 201 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
+R + ++ +DP+R LLTA+EE++L+ I LEG
Sbjct: 97 QRAAASKIKVADPVRMYLKEIGRVDLLTADEEIELAKRI-----LEG------------- 138
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
D+ L K ++ +N+RLV+SIAK Y G GM+ DL+QEG
Sbjct: 139 -----------DE-----------LAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGN 176
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL++ EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q
Sbjct: 177 MGLMKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQ 236
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAE 440
L + GR P EE+ L +++ +L + P SL+ IG + + I D A
Sbjct: 237 LLQDLGREPTPEEIGAEMDLPTEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDDGAL 296
Query: 441 TAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 500
+ ED ++E LE VLDTL RE V+R RFGL+DG ++TL+++G++ GV+RERIRQ
Sbjct: 297 SPEDFTASALLREQLEDVLDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQ 356
Query: 501 IESSAFRKLKNKKRTKHLMQY 521
IE+ A RKL++ R+K L +
Sbjct: 357 IEAKALRKLRHPSRSKQLKDF 377
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 197/350 (56%), Gaps = 27/350 (7%)
Query: 184 KAAANV----MSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSA 237
KA +V +S KS S RKR + + DP+R LLTA EE+ L+
Sbjct: 82 KATVDVQLPKVSSKSKVRSARKRSADAGITVLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 141
Query: 238 GIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVD-QRELRRRLN----YGILCKDKMI 291
I+ G + T + A G++ +R +RRL GI K ++I
Sbjct: 142 KIE---------------AGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLI 186
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+
Sbjct: 187 EANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAIT 246
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
++++DQ+RTIR+P HMVE ++ ++QL E GR P+ EE+ + GL +R+ +
Sbjct: 247 RAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKI 306
Query: 412 PKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVR 471
+ P SL+ IG ++ + + I D A D ++E L KVLD L RER+V+
Sbjct: 307 SQEPVSLETPIGEEEDSQLGDFIEDDAAVVPPDAASFSMLQEQLSKVLDGLAERERKVIA 366
Query: 472 WRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDG +TL+E+G GV+RERIRQIES KL++ R+ L Y
Sbjct: 367 LRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDY 416
>gi|414160927|ref|ZP_11417190.1| RNA polymerase sigma factor rpoD [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876606|gb|EKS24504.1| RNA polymerase sigma factor rpoD [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 369
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 120 ELAKRIEQGDEVAKARLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFS 179
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 180 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 239
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D E ++ D + +KE
Sbjct: 240 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHAAYELLKE 299
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 300 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 359
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 360 RSKRLKDF 367
>gi|443673296|ref|ZP_21138364.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414111|emb|CCQ16702.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 323
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 203/337 (60%), Gaps = 25/337 (7%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL- 248
S ST+ R RP+ ++D P +R + LLTA EE+ L+ I+ GL
Sbjct: 3 SPSTTIRPRPTDADLDAQSPAADLVRVYLNGIGRTALLTAAEEVDLAKRIE-----AGLY 57
Query: 249 -REVL--SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
++VL ++R + V +R L + G + ++ +N+RLV+S+AK Y
Sbjct: 58 AKQVLENTKRL------------SAVKKRNLAIIVRDGSSARSHLLEANLRLVVSLAKRY 105
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP
Sbjct: 106 TGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
H+VE ++ +++L+ + GR ++E++ +G++++++ +L + P SLD +G +
Sbjct: 166 HLVEQVNKLARIKRELHQQLGREATDDELSSESGIAVEKIADLLDHSRDPVSLDMPVGSD 225
Query: 426 QNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQ 485
+ + I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL
Sbjct: 226 EEAPLGDFIEDSEATSAENAVIAGLLHSDVRVVLGTLDEREQQVIRLRYGLDDGQPRTLD 285
Query: 486 EIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+IG+L G+SRER+RQIE KL+ R + L YA
Sbjct: 286 QIGKLFGLSRERVRQIEREVMVKLRQGDRAEKLRSYA 322
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 166/260 (63%), Gaps = 1/260 (0%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 97 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNL 155
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++ L
Sbjct: 156 GLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRAL 215
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 441
E GR P EEV E GLS +++ VL + P SL +G ++ ++I D +A +
Sbjct: 216 LQEAGREPAAEEVGERLGLSAEKVEEVLRLAREPISLHAPVGGEDDVFLGDLIEDADAAS 275
Query: 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501
+ +++ L+ VL TL RERQVV+ R+G +DGR +TL+EIG L GV+RER+RQI
Sbjct: 276 PAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQI 335
Query: 502 ESSAFRKLKNKKRTKHLMQY 521
ES R+L+ L Y
Sbjct: 336 ESKTLRRLREHTAAGQLRGY 355
>gi|375142610|ref|YP_005003259.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823231|gb|AEV76044.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 319
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 168/250 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 189 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|403384152|ref|ZP_10926209.1| RNA polymerase sigma factor RpoD [Kurthia sp. JC30]
Length = 375
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLTPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA++ D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397283|gb|AAS05143.1| SigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 332
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 82 KRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 141
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 142 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 201
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 202 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 261
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 262 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNG 321
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 322 ERADRLRSYA 331
>gi|3062909|dbj|BAA25730.1| SigA [Bacillus sp.]
Length = 372
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 135 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EEVAE L+ +++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDVGREPSPEEVAEEMDLTPEKV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A D + +KE LE VLDTL R
Sbjct: 255 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 315 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 370
>gi|423585227|ref|ZP_17561314.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD045]
gi|401233870|gb|EJR40356.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD045]
Length = 375
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ AEKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAAEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|374324890|ref|YP_005078019.1| RNA polymerase sigma factor rpod [Paenibacillus terrae HPL-003]
gi|357203899|gb|AET61796.1| RNA polymerase sigma factor rpod [Paenibacillus terrae HPL-003]
Length = 377
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+N G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRINNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EEVA LS++++ ++ + P SL+ IG + + I D EA D +
Sbjct: 245 PEEVAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 304
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 305 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 365 HPSRSKRLKDF 375
>gi|392416004|ref|YP_006452609.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615780|gb|AFM16930.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 319
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 160/233 (68%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA WWI+QA
Sbjct: 86 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWWIRQA 145
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ +++++ GR +EE+A +G+ ++++ +L
Sbjct: 146 ITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVEKITDLL 205
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLD +G ++ + I D EA +AE+ +I + + D+ VL TL+ RE+QV
Sbjct: 206 EHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQV 265
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N +R L YA
Sbjct: 266 IRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSYA 318
>gi|379014769|ref|YP_005291005.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus VC40]
gi|374363466|gb|AEZ37571.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus VC40]
Length = 368
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ +++++Q+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIANQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 183/301 (60%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LLTA EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 159 LLTAEEEVDLAKRIEAGLYGAERLRQVEEEGQKLSP--------------QMRRDLNWIV 204
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 205 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 264
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 265 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 324
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ ++ + + P SLDQ IG + + + I D EA A D + M++ L VL
Sbjct: 325 TPDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQ 384
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 385 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 444
Query: 521 Y 521
Y
Sbjct: 445 Y 445
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 183/288 (63%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L+ ++E L + G PT +WA AA + EL +N G +
Sbjct: 23 LLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINAGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++ L GR E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQNLGRAATVGELAQELDLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + ED + M+ DLEK++ L +
Sbjct: 203 REYLERARQPLSLDLRVGDNQDTELVELLEDT-GPSPEDFVTHSAMQVDLEKLMADLTAQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGLEDG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QREVLALRFGLEDGQPMTLAKIGDRLNISRERVRQIEREALSKLRKRK 309
>gi|19553123|ref|NP_601125.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|62390759|ref|YP_226161.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|1149591|emb|CAA89988.1| SigB sigma factor [Corynebacterium glutamicum]
gi|21324689|dbj|BAB99312.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigB)
[Corynebacterium glutamicum ATCC 13032]
gi|41326097|emb|CAF20260.1| RNA POLYMERASE SIGMA FACTOR [Corynebacterium glutamicum ATCC 13032]
gi|385144025|emb|CCH25064.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 331
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 160/250 (64%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 81 KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 140
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR NE
Sbjct: 141 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATNE 200
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 201 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRH 260
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL+TL PRE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 261 SDIRAVLNTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDG 320
Query: 513 KRTKHLMQYA 522
+R L +YA
Sbjct: 321 ERASRLREYA 330
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/296 (41%), Positives = 184/296 (62%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 288 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 338
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 339 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 398
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 399 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 458
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 459 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 518
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 519 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 574
>gi|308069922|ref|YP_003871527.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus polymyxa
E681]
gi|310643031|ref|YP_003947789.1| RNA polymerase sigma factor rpod [Paenibacillus polymyxa SC2]
gi|375309436|ref|ZP_09774717.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus sp.
Aloe-11]
gi|305859201|gb|ADM70989.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus polymyxa
E681]
gi|309247981|gb|ADO57548.1| RNA polymerase sigma factor rpoD [Paenibacillus polymyxa SC2]
gi|375078745|gb|EHS56972.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus sp.
Aloe-11]
gi|392303839|emb|CCI70202.1| RNA polymerase sigma factor rpoD [Paenibacillus polymyxa M1]
Length = 377
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+N G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRINNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EEVA LS++++ ++ + P SL+ IG + + I D EA D +
Sbjct: 245 PEEVAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 304
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 305 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 365 HPSRSKRLKDF 375
>gi|73662504|ref|YP_301285.1| RNA polymerase sigma factor RpoD [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495019|dbj|BAE18340.1| RNA polymerase sigma factor A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 368
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +++ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKKIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 181/306 (59%), Gaps = 25/306 (8%)
Query: 226 LLTANEEMQLS----AGI-----QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 276
LLTA EE+ L+ AGI D EG E L P + +R+L
Sbjct: 90 LLTAAEEVDLAKRIEAGIFAQHRLDTATAEGTLESLD------PQY----------RRDL 133
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
R + G L K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGF
Sbjct: 134 RAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGF 193
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
KFSTYA WWI+QA+ + ++DQ+RTIRLP H+VE ++ ++ ++ GR P+ E+A+
Sbjct: 194 KFSTYATWWIRQAITRGMADQARTIRLPVHLVEQVNKLARIKRDMHQRQGREPSEAELAQ 253
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
+G+ ++ +L + P SLD +G + + I D EA AE+ +I + +DL
Sbjct: 254 ESGIPEHKISDLLDHARDPVSLDMPVGSEEEAPLGDFIEDAEATDAENTVISSLLSDDLR 313
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
+VL TL RE++V+R RFGL+DG+ +TL +IG +SRER+RQIE KL+ +R
Sbjct: 314 RVLATLEDREQKVIRMRFGLDDGQPRTLDQIGRAFTLSRERVRQIEREVMAKLRVGERAD 373
Query: 517 HLMQYA 522
L YA
Sbjct: 374 KLRAYA 379
>gi|15613939|ref|NP_242242.1| RNA polymerase sigma factor RpoD [Bacillus halodurans C-125]
gi|12643264|sp|O66381.2|RPOD_BACHD RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43; AltName: Full=Sigma-A
gi|10173992|dbj|BAB05095.1| RNA polymerase major sigma factor [Bacillus halodurans C-125]
Length = 372
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 135 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EEVAE L+ +++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A D + +KE LE VLDTL R
Sbjct: 255 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 315 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 370
>gi|400536819|ref|ZP_10800353.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
gi|400329832|gb|EJO87331.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
Length = 319
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 166/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 189 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|390453096|ref|ZP_10238624.1| RNA polymerase sigma factor rpod [Paenibacillus peoriae KCTC 3763]
Length = 377
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+N G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRINNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EEVA LS++++ ++ + P SL+ IG + + I D EA D +
Sbjct: 245 PEEVAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 304
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 305 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 365 HPSRSKRLKDF 375
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 201/335 (60%), Gaps = 10/335 (2%)
Query: 184 KAAANVMSVKSGSTSRRK-----RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
+A A V S +T R RP V +D +R LLT+ EE+
Sbjct: 8 QAKAGVRSATGSATERSADKGVARPGVS----ADMVRTYLHEIGKIPLLTSEEEIIFGKR 63
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
+Q L++L L E L+E+ PT A+WA AG++ EL + + G K KMI +N+RLV
Sbjct: 64 VQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTRSKRKMIEANLRLV 123
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+S+AK YQ + L DLVQEG GL R +KFD +KGFKFSTYA+WWI+QA+ ++++ Q+
Sbjct: 124 VSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQA 183
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIRLP H+ E ++K+A++QL GR E+A+A L +++ L + P SL
Sbjct: 184 RTIRLPVHITEKLNKIKKAQRQLSQSLGRVATAAEIADALKLKPEQVREFLSMARQPVSL 243
Query: 419 DQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 478
D +IG NQ+ + +E++ D E ++ E + + +++D+ +L L P++R+V+ R+GLED
Sbjct: 244 DLRIGDNQDTELAELLED-EGDSPESFALSESLRDDIAGLLLDLTPKQREVMIMRYGLED 302
Query: 479 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
G+ +L I + M +SRE++RQ+E A L+ +K
Sbjct: 303 GKEMSLASISKRMELSREQVRQLERQAMDSLRKRK 337
>gi|337290933|ref|YP_004629954.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
gi|334699239|gb|AEG84035.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
Length = 329
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 159/251 (63%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 199 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VLDTL RE+ V+R R+GLEDG +TL +IG G+SRER+RQIE KL++
Sbjct: 259 SDIRSVLDTLEQREQDVIRMRYGLEDGVPRTLDQIGRQFGLSRERVRQIEREVMTKLRDG 318
Query: 513 KRTKHLMQYAI 523
R L YAI
Sbjct: 319 ARADKLRAYAI 329
>gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [Mycobacterium avium 104]
gi|254776043|ref|ZP_05217559.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp. avium
ATCC 25291]
gi|440778274|ref|ZP_20957040.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
gi|118164796|gb|ABK65693.1| sigma factor SigB [Mycobacterium avium 104]
gi|436721377|gb|ELP45512.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 319
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 189 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/296 (41%), Positives = 184/296 (62%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 286 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 336
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 337 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 396
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 397 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 456
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 457 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 516
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 517 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 572
>gi|328955627|ref|YP_004372960.1| RNA polymerase sigma-70 subunit RpoD [Coriobacterium glomerans PW2]
gi|328455951|gb|AEB07145.1| RNA polymerase, sigma 70 subunit, RpoD [Coriobacterium glomerans
PW2]
Length = 442
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 182/315 (57%), Gaps = 17/315 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA +E M++ AG++ KLE S+R + T A
Sbjct: 138 GDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGLEAAEKLES-----SDRGEIALTRA--- 189
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
D R L R G+ K +I++N+RLV+SIAK Y G GM+ DL+QEG GL+R
Sbjct: 190 -----DMRRLSRIEQVGLEAKQALISANLRLVVSIAKRYVGRGMHFLDLIQEGNLGLIRA 244
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E G
Sbjct: 245 VEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELG 304
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P EE+ +S R+ + + P SL+ IG ++ + + I D +A D
Sbjct: 305 RDPTPEEIGAEMEMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDAQAVVPPDAA 364
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L +VLD+L RER+V+ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 365 SFSMLREQLVQVLDSLADRERKVIELRFGLNDGHPRTLEEVGRDFGVTRERIRQIESKTL 424
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 425 AKLRHPSRSSKLKDY 439
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 188/296 (63%), Gaps = 3/296 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L L+E L + G PT +W+ AA +D+ L + G +
Sbjct: 23 LLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAEGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR P+ E+A A L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQNLGRAPSIVELATALELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + E+ + + + D+EK++ L P+
Sbjct: 203 REYLERARLPLSLDLRVGDNQDTELGELLEDTSL-SPEEFVTESCLSTDIEKLMADLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+R+V+ RFGL DG+ TL +IG+ + +SRER+RQIE A KL +KR L QY
Sbjct: 262 QREVLSLRFGLADGQAMTLAKIGDRLNISRERVRQIEREALTKL--RKRKADLDQY 315
>gi|418576063|ref|ZP_13140209.1| RNA polymerase sigma factor RpoD [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325125|gb|EHY92257.1| RNA polymerase sigma factor RpoD [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 368
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +++ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKKIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 195/327 (59%), Gaps = 17/327 (5%)
Query: 200 RKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R R S ++D P +R + LLTA +E++L+ I+ L + L E S+R
Sbjct: 8 RVRASDSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLLET-SKR 66
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ +++L + G + ++ +N+RLV+S+AK Y G GM L DL
Sbjct: 67 LSAAK------------KKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDL 114
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 115 IQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLA 174
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L+ + GR +EE+A +G+ ++++ +L + P SLD +G ++ + I
Sbjct: 175 RIKRELHQQLGREATDEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIE 234
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA +AE +I + D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SR
Sbjct: 235 DSEATSAESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSR 294
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQYA 522
ER+RQIE KL+ +R L YA
Sbjct: 295 ERVRQIEREVMAKLRKGERADRLRAYA 321
>gi|403668244|ref|ZP_10933520.1| RNA polymerase sigma factor RpoD [Kurthia sp. JC8E]
Length = 378
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 141 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 200
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ E L+ +++
Sbjct: 201 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLTPEKV 260
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA++ D + +KE LE VLDTL R
Sbjct: 261 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPADHAAYELLKEQLEDVLDTLTDR 320
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 321 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 376
>gi|417749572|ref|ZP_12397964.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 319
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 189 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|299535819|ref|ZP_07049140.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZC1]
gi|424735380|ref|ZP_18163844.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZB2]
gi|298729019|gb|EFI69573.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZC1]
gi|422950582|gb|EKU44950.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZB2]
Length = 375
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA++ D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|392395044|ref|YP_006431646.1| sigma-70 family RNA polymerase sigma factor [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526122|gb|AFM01853.1| RNA polymerase sigma factor, sigma-70 family [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 394
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 145 ELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYV 204
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 205 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEE 264
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A +S++R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 265 IAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKE 324
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 325 QLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 384
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 385 RSKKLKDY 392
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ ++E LS + PT +WAA+AG++ EL + + G +
Sbjct: 23 LLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIALGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A LS K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATVSELAAELELSPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ D + +D +++ M D+E+++ L P+
Sbjct: 203 REYLERARLPLSLDLRVGDNHDTELGELLEDT-GVSPDDFVLQSCMSTDIERMMADLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL DG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QREVLSLRFGLVDGQSMTLAKIGDRLNISRERVRQIEREALTKLRKRK 309
>gi|431794831|ref|YP_007221736.1| sigma-70 family RNA polymerase sigma factor [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785057|gb|AGA70340.1| RNA polymerase sigma factor, sigma-70 family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 393
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 144 ELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYV 203
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 204 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEE 263
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A +S++R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 264 IATQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKE 323
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 324 QLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 383
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 384 RSKKLKDY 391
>gi|169829158|ref|YP_001699316.1| RNA polymerase sigma factor rpoD [Lysinibacillus sphaericus C3-41]
gi|168993646|gb|ACA41186.1| RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)
[Lysinibacillus sphaericus C3-41]
Length = 375
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA++ D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|410460493|ref|ZP_11314171.1| RNA polymerase sigma factor RpoD [Bacillus azotoformans LMG 9581]
gi|409927108|gb|EKN64254.1| RNA polymerase sigma factor RpoD [Bacillus azotoformans LMG 9581]
Length = 380
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 143 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 202
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 262
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 263 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDAAAYELLKEQLEDVLDTLTDR 322
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 378
>gi|402300277|ref|ZP_10819798.1| RNA polymerase sigma factor RpoD [Bacillus alcalophilus ATCC 27647]
gi|401724574|gb|EJS97923.1| RNA polymerase sigma factor RpoD [Bacillus alcalophilus ATCC 27647]
Length = 372
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 123 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYD 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 183 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGREPTPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
VAE L+ +++ +L + P SL+ IG + + I D +A D + +KE
Sbjct: 243 VAEEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKE 302
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 303 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 362
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 363 RSKRLKDF 370
>gi|222151460|ref|YP_002560616.1| RNA polymerase sigma factor RpoD [Macrococcus caseolyticus
JCSC5402]
gi|222120585|dbj|BAH17920.1| RNA polymerase sigma factor SigA [Macrococcus caseolyticus
JCSC5402]
Length = 366
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 117 ELAKRIEQGDEEAKARLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFT 176
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE
Sbjct: 177 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEE 236
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D +A++ D + +KE
Sbjct: 237 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAQSPADHAAYELLKE 296
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 356
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 357 RSKRLKDF 364
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 184/319 (57%), Gaps = 8/319 (2%)
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTF 262
V DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 139 VDSFGIDDPVRMYLKEIGKVNLLTPDEEIQLAQDMGAGDAAK-EQMEELEQARKNGEEVS 197
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+QEG G
Sbjct: 198 LTEEEEK-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLG 252
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL
Sbjct: 253 LIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLL 312
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETA 442
E G P+ EE+AE + + ++ +L + P SL+ IG ++ + I D +A
Sbjct: 313 QELGHDPSPEEIAEEMSMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDASEP 372
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
+ +KE L VL TL PRE +V++ RFG+EDGR +TL+E+G+ V+RERIRQIE
Sbjct: 373 SEAASFTLLKEQLVDVLGTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQIE 432
Query: 503 SSAFRKLKNKKRTKHLMQY 521
+ A RKL++ R+K L +
Sbjct: 433 AKALRKLRHPSRSKKLKDF 451
>gi|423076581|ref|ZP_17065289.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense DP7]
gi|361852386|gb|EHL04646.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense DP7]
Length = 392
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 143 ELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYV 202
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 203 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEE 262
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A +S++R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 263 IAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKE 322
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 323 QLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 382
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 383 RSKKLKDY 390
>gi|56963455|ref|YP_175186.1| RNA polymerase sigma factor RpoD [Bacillus clausii KSM-K16]
gi|56909698|dbj|BAD64225.1| DNA-directed RNA polymerase major sigma-43 factor sigma-A [Bacillus
clausii KSM-K16]
Length = 373
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYDKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EEV + LS ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDYGREPTPEEVGKEMDLSPDKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379748152|ref|YP_005338973.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379755443|ref|YP_005344115.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|379762989|ref|YP_005349386.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|387876818|ref|YP_006307122.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|406031681|ref|YP_006730572.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|443306610|ref|ZP_21036398.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
gi|378800516|gb|AFC44652.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|378805659|gb|AFC49794.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|378810931|gb|AFC55065.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|386790276|gb|AFJ36395.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|405130228|gb|AFS15483.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|442768174|gb|ELR86168.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
Length = 319
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLEAVVRDGKAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 189 ELAAESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 248
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 249 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNG 308
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 309 ERADRLRSYA 318
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 181/298 (60%), Gaps = 13/298 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E++LS I+ L E L + G T A+ +R+L+ + G
Sbjct: 137 LLTAADEVELSQRIEAGLYAEHLLD-----SGEKLTRAR--------KRDLKVLVREGRA 183
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 184 ARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGYKFSTYATWW 243
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NEE+A+ +G+ ++
Sbjct: 244 IRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELADESGIDESKI 303
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SLD +G ++ + I D EA AE ++ D+ VLDTL+ R
Sbjct: 304 EMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSEATDAEAAVVASLRHSDVRAVLDTLDER 363
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
E+ V++ R+GL+DG +TL +IG G+SRER+RQIE KL+ R L +YA+
Sbjct: 364 EQDVIKMRYGLDDGMPRTLDQIGRSFGLSRERVRQIEREVMAKLREGDRAARLREYAV 421
>gi|407796193|ref|ZP_11143149.1| RNA polymerase sigma factor RpoD [Salimicrobium sp. MJ3]
gi|407019547|gb|EKE32263.1| RNA polymerase sigma factor RpoD [Salimicrobium sp. MJ3]
Length = 375
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 157/237 (66%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA W
Sbjct: 137 FAKRELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATW 196
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +
Sbjct: 197 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGREPTPEEIAEEMELTPDK 256
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ +L + P SL+ IG + + I D EA + D + +KE LE VLDTL
Sbjct: 257 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTD 316
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 REENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|288555754|ref|YP_003427689.1| RNA polymerase sigma factor RpoD [Bacillus pseudofirmus OF4]
gi|288546914|gb|ADC50797.1| RNA polymerase sigma factor SigD [Bacillus pseudofirmus OF4]
Length = 372
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 123 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYE 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 183 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGREPTPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
VAE L+ +++ +L + P SL+ IG + + I D EA D + +KE
Sbjct: 243 VAEEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKE 302
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 303 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 362
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 363 RSKRLKDF 370
>gi|291451171|ref|ZP_06590561.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291354120|gb|EFE81022.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length = 397
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 165/260 (63%), Gaps = 1/260 (0%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 137 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNL 195
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++ L
Sbjct: 196 GLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRAL 255
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 441
E GR P EEV E GLS +++ VL P SL +G ++ ++I D +A +
Sbjct: 256 LQEAGREPAAEEVGERLGLSAEKVEEVLRLAHEPISLHAPVGGEDDVFLGDLIEDADAAS 315
Query: 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501
+ +++ L+ VL TL RERQVV+ R+G +DGR +TL+EIG L GV+RER+RQI
Sbjct: 316 PAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQI 375
Query: 502 ESSAFRKLKNKKRTKHLMQY 521
ES R+L+ L Y
Sbjct: 376 ESKTLRRLREHTAAGQLRGY 395
>gi|456011651|gb|EMF45388.1| RNA polymerase sigma factor RpoD [Planococcus halocryophilus Or1]
Length = 327
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKGFKFSTYA WW
Sbjct: 90 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYATWW 149
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L +++
Sbjct: 150 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEEIGEEMDLLPEKV 209
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A++ D + +KE LE VLDTL R
Sbjct: 210 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSDAQSPSDHAAYELLKEQLEDVLDTLTDR 269
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 270 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 325
>gi|51891726|ref|YP_074417.1| RNA polymerase sigma factor RpoD [Symbiobacterium thermophilum IAM
14863]
gi|51855415|dbj|BAD39573.1| RNA polymerase major sigma factor [Symbiobacterium thermophilum IAM
14863]
Length = 388
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 151 AKRKLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWW 210
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A + ++R+
Sbjct: 211 IRQAITRAIADQARTIRIPVHMVETINKLIRVTRQLVQELGREPTPEEIAAVMDIPVERV 270
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SL+ IG ++ + I D +A + +KE LE+VL++L PR
Sbjct: 271 REIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFTLLKEQLEEVLESLTPR 330
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 331 EEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLKDY 386
>gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [Mycobacterium vanbaalenii PYR-1]
gi|119956259|gb|ABM13264.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 329
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 167/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 139 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ ++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 199 ELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N
Sbjct: 259 TDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 318
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 319 ERADRLRSYA 328
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 188/315 (59%), Gaps = 17/315 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LL+++EE++L+ AG + +L L+E G A+
Sbjct: 143 DDPVRMYLKEIGKVNLLSSDEEIELAQAMGAGAEAKEQLAELQE------SGEEIPAEVL 196
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
A EL + + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 197 A-------ELNKAIKRGERAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKA 249
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL E G
Sbjct: 250 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELG 309
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
P+ EE+AE + ++R+ +L + P SL+ IG ++ + I D +A +
Sbjct: 310 HDPSPEEIAEEMSMPVERVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDASEPAEAA 369
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
+KE L +VL TL PRE +V++ RFG+EDGR +TL+E+G+ V+RERIRQIE+ A
Sbjct: 370 SFTLLKEQLVEVLSTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQIEAKAL 429
Query: 507 RKLKNKKRTKHLMQY 521
RKL++ R+K L +
Sbjct: 430 RKLRHPSRSKKLKDF 444
>gi|311031650|ref|ZP_07709740.1| RNA polymerase sigma factor RpoD [Bacillus sp. m3-13]
Length = 374
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+AE L+ ++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEDMDLTPDKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 257 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|299822900|ref|ZP_07054786.1| DNA-directed RNA polymerase sigma subunit RpoD [Listeria grayi DSM
20601]
gi|299816429|gb|EFI83667.1| DNA-directed RNA polymerase sigma subunit RpoD [Listeria grayi DSM
20601]
Length = 389
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 141 LAKRIETGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 200
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 201 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 260
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D EA + D + +KE
Sbjct: 261 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQ 320
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 321 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 380
Query: 515 TKHLMQY 521
+K L +
Sbjct: 381 SKQLKDF 387
>gi|421860383|ref|ZP_16292514.1| DNA-directed RNA polymerase [Paenibacillus popilliae ATCC 14706]
gi|410830131|dbj|GAC42951.1| DNA-directed RNA polymerase [Paenibacillus popilliae ATCC 14706]
Length = 374
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/248 (46%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G L K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 125 ELAKRIEQGDLEAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHS 184
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 185 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPAPEE 244
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A LS++++ ++ + P SL+ IG + + I D EA D + +KE
Sbjct: 245 IAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKE 304
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 305 QLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 364
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 365 RSKRLKDF 372
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 184/319 (57%), Gaps = 8/319 (2%)
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTF 262
V DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 134 VDSFGIDDPVRMYLKEIGKVNLLTPDEEVQLAQDMGAGDAAK-EQMEELEQARKNGEEVS 192
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+QEG G
Sbjct: 193 ITEEEEK-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLG 247
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL
Sbjct: 248 LIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLL 307
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETA 442
E G P+ EE+AE + + ++ +L + P SL+ IG ++ + I D +A
Sbjct: 308 QELGHDPSPEEIAEEMSMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDASEP 367
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
+ +KE L VL TL PRE +V++ RFG+EDGR +TL+E+G+ V+RERIRQIE
Sbjct: 368 SEAASFTLLKEQLVDVLGTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQIE 427
Query: 503 SSAFRKLKNKKRTKHLMQY 521
+ A RKL++ R+K L +
Sbjct: 428 AKALRKLRHPSRSKKLKDF 446
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 204/340 (60%), Gaps = 24/340 (7%)
Query: 191 SVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
+V SG T+ RP++ E D +D +R + LL A +E++L+ I+
Sbjct: 12 TVASGDTTP-SRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---- 66
Query: 245 LEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
GL + VL+ R + +AA +R+L + G + + ++ +N+RLV+S+A
Sbjct: 67 -AGLYAKHVLATR-------KRLSAAK---KRDLTIVVREGEVARAHLLEANLRLVVSLA 115
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+VE ++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +
Sbjct: 176 LPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPV 235
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G ++ + I D EA +AE +I M D+ VL TL+ RE+QV+R R+GL+DG+ +
Sbjct: 236 GSDEEAPLGDFIEDAEATSAESAVIAGLMHTDVRAVLATLDEREQQVIRMRYGLDDGQPR 295
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
TL +IG + G+SRER+RQIE KL+ +R + L YA
Sbjct: 296 TLDQIGRMFGLSRERVRQIEREVMGKLRQGERAERLRAYA 335
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 175/262 (66%), Gaps = 5/262 (1%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ WA +G+D +EL++RL G +D+MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 112 YTLWAKESGLDTKELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTL 171
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 172 GLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEI 231
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEA 439
SE GR + ++A+ G+S + + L + PR SL+ ++G +Q+ + +++ D A
Sbjct: 232 ASEKGRLASVSDLAKELGVSEETVRQTL--ARVPRSVSLETRVGKDQDTQLGDLLEDGHA 289
Query: 440 ETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIR 499
T E L + + +DLE +L+ L+PRE +V+R RFGLED +TL EIGE M +SRER+R
Sbjct: 290 -TPEQTLTRDSLHDDLEHLLEELSPREAEVIRSRFGLEDDTPRTLAEIGEAMALSRERVR 348
Query: 500 QIESSAFRKLKNKKRTKHLMQY 521
QIE+ A KL+ +R + Y
Sbjct: 349 QIETRALLKLRQPQRRSKVRDY 370
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 202/347 (58%), Gaps = 20/347 (5%)
Query: 181 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 145 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 204
Query: 240 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 294
+ L E LR ++ G T AQ +R LN+ G K+ ++ +N
Sbjct: 205 EAGLFATERLRRMVD--AGEKITTAQ------------KRDLNWISRDGNRAKNHLLEAN 250
Query: 295 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 354
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 251 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 310
Query: 355 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414
+DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + +
Sbjct: 311 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 370
Query: 415 PRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRF 474
P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ RE VVR RF
Sbjct: 371 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRF 430
Query: 475 GLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 431 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 477
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 190/298 (63%), Gaps = 5/298 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ +Q L+KL L+E L G + QWA AA V EL+R++ G
Sbjct: 63 LLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQVLAGSR 122
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG++FSTYA+WW
Sbjct: 123 AKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 182
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ QSRTIRLP H+ E R+K+ +++L GR P E+AE L M+
Sbjct: 183 IRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIAEE--LEMEPA 240
Query: 406 HAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
H L + PR SL+ ++G +++ + E++ E + E+ +++ ++ D++++LD L
Sbjct: 241 HVRELMSRVPRSVSLETRVGKDKDTELGELLEAEEV-SPEESAVQESLRRDVKELLDDLT 299
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RER V+ R+GL DGR +L EIG + +SRER+RQIES A +KL+ +R + Y
Sbjct: 300 LRERDVITMRYGLLDGRTYSLSEIGRALDLSRERVRQIESKALQKLRQPRRRAKVRDY 357
>gi|392406805|ref|YP_006443413.1| sigma-70 family RNA polymerase sigma factor [Anaerobaculum mobile
DSM 13181]
gi|390619941|gb|AFM21088.1| RNA polymerase sigma factor, sigma-70 family [Anaerobaculum mobile
DSM 13181]
Length = 408
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+I +N+RLV+SIAK Y G G++ DL+QEG GL+R EKFD KGFKFSTYA WW
Sbjct: 171 AKKKLIEANLRLVVSIAKKYIGRGLSFLDLIQEGNLGLIRAVEKFDYRKGFKFSTYATWW 230
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR P EE+A+A GL +++
Sbjct: 231 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLVQQLGREPTTEEIAQALGLPPEKV 290
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SL+ IG ++ + + + D E+ E+ + ++E LE++LD L R
Sbjct: 291 EDIQRIAQEPVSLETPIGEEEDSQLGDFLEDKESPNPEEATAGQLLREQLEEMLDELTER 350
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+V+R RFGLEDG TL+E+G+ V+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 351 EREVLRLRFGLEDGHAHTLEEVGKRFNVTRERIRQIEAKALRKLRHPSRSKRLRDY 406
>gi|145295824|ref|YP_001138645.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum R]
gi|417971573|ref|ZP_12612496.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|418244265|ref|ZP_12870688.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
gi|12958494|gb|AAK09322.1|AF320818_1 sigma factor SigB [[Brevibacterium] flavum]
gi|140845744|dbj|BAF54743.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044055|gb|EGV39736.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|354511671|gb|EHE84577.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
Length = 331
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 160/250 (64%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 81 KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 140
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 141 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 200
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 201 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRH 260
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL+TL PRE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 261 SDIRAVLNTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDG 320
Query: 513 KRTKHLMQYA 522
+R L +YA
Sbjct: 321 ERASRLREYA 330
>gi|152976724|ref|YP_001376241.1| RNA polymerase sigma factor RpoD [Bacillus cytotoxicus NVH 391-98]
gi|152025476|gb|ABS23246.1| RNA polymerase, sigma 70 subunit, RpoD family [Bacillus cytotoxicus
NVH 391-98]
Length = 373
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 188/343 (54%), Gaps = 52/343 (15%)
Query: 179 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
T+ E+ N +SV G V +DP+R LL+A EE+QL+
Sbjct: 81 TKTEEEFDLNDLSVPPG------------VKINDPVRMYLKEIGRVDLLSAEEEIQLATR 128
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
I+ EG E +RRL +N+RLV
Sbjct: 129 IE-----EG-------------------------DEEAKRRLA----------EANLRLV 148
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+
Sbjct: 149 VSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQA 208
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIR+P HMVE ++ ++QL + GR P EE+ E L+ +++ +L + P SL
Sbjct: 209 RTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLAPEKVREILKIAQEPVSL 268
Query: 419 DQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 478
+ IG + + I D EA + D + +KE LE VLDTL RE V+R RFGL+D
Sbjct: 269 ETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDD 328
Query: 479 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 329 GRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|317122932|ref|YP_004102935.1| RNA polymerase sigma-70 subunit RpoD [Thermaerobacter marianensis
DSM 12885]
gi|315592912|gb|ADU52208.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter marianensis
DSM 12885]
Length = 433
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 167/248 (67%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K K+I +N+RLV+SIAK Y G GM DL+QEG GL++ AEKFD
Sbjct: 184 ELAKRIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYR 243
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 244 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEE 303
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ G+ +++ ++ + P SL+ IG ++ + I D +A + + ++E
Sbjct: 304 IAKEMGIEPEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLLLRE 363
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VL TL RE++V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 364 QLEDVLHTLTDREQKVLRLRFGLDDGRQRTLEEVGQVFGVTRERIRQIEAKALRKLRHPS 423
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 424 RSKKLKDF 431
>gi|333991092|ref|YP_004523706.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487060|gb|AEF36452.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 321
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 167/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 71 KRELATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 130
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ + GR +E
Sbjct: 131 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQQLGREATDE 190
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ ++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 191 ELAAESGIPAEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDSEAMSAENAVISELLH 250
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 251 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHG 310
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 311 ERADRLRSYA 320
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 17/327 (5%)
Query: 200 RKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R R S ++D P +R + LLTA +E++L+ I+ L + L E
Sbjct: 8 RVRASDSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLLE----- 62
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
T + +AA +R+L + G + ++ +N+RLV+S+AK Y G GM L DL
Sbjct: 63 -----TGKRLSAAR---KRDLAVIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDL 114
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 115 IQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLA 174
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L+ + GR ++E+A +G+ ++++ +L + P SLD +G ++ + I
Sbjct: 175 RIKRELHQQLGREATDDELANESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIE 234
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA +AE +I + D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SR
Sbjct: 235 DSEATSAESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSR 294
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQYA 522
ER+RQIE KL+ +R L YA
Sbjct: 295 ERVRQIEREVMSKLRKGERADRLRAYA 321
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 186/314 (59%), Gaps = 2/314 (0%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 105 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 164
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 165 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 222
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 223 EKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR 282
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P+ EE+A+ + ++R+ +L + P SL+ IG ++ + I D D
Sbjct: 283 EPSPEEIAKEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIKDDNVPVPADAAA 342
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+KE LE+VL TL RE++V+ RFGLEDGR +TL+E+G+ V+RERIRQIE+ A R
Sbjct: 343 FTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALR 402
Query: 508 KLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 403 KLRHPSRSRKLKDY 416
>gi|1943995|dbj|BAA19494.1| plaC [Staphylococcus aureus]
Length = 368
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 119 ELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFN 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++ Q+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAITRAIAHQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E L +++ +L + P SL+ IG + + I D EA++ D + +KE
Sbjct: 239 IGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKE 298
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 358
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 359 RSKRLKDF 366
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 186/314 (59%), Gaps = 2/314 (0%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 121 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 180
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 181 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 238
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 239 EKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR 298
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P+ EE+A+ + ++R+ +L + P SL+ IG ++ + I D D
Sbjct: 299 EPSPEEIAKEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIKDDNVPVPADAAA 358
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+KE LE+VL TL RE++V+ RFGLEDGR +TL+E+G+ V+RERIRQIE+ A R
Sbjct: 359 FTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALR 418
Query: 508 KLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 419 KLRHPSRSRKLKDY 432
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 242 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 292
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 293 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 352
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 353 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 412
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 413 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 472
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 473 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 528
>gi|126652263|ref|ZP_01724442.1| RNA polymerase sigma factor RpoD [Bacillus sp. B14905]
gi|126590995|gb|EAZ85107.1| RNA polymerase sigma factor RpoD [Bacillus sp. B14905]
Length = 375
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA++ D + +KE LE V+DTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVIDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 189/289 (65%), Gaps = 1/289 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ +E L++R G P++A+WA AGV +EL++ L G
Sbjct: 24 LLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALEDGQT 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++ L + GR E+A+ L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRSLAQDLGRAATIAELADELDLNPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + +++ D A + ED ++ M+ DLE ++ L +
Sbjct: 204 REYLERARLPLSLDLRVGDNQDTELGDLLEDDGA-SPEDYALQSSMRSDLEVLMADLTDQ 262
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+RQV+ RFGLE+G+ TL +IG+ + +SRER+RQIE A KL+ +K+
Sbjct: 263 QRQVLALRFGLENGQTMTLAKIGDRLNISRERVRQIEREALTKLRKRKQ 311
>gi|384515845|ref|YP_005710937.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|397654192|ref|YP_006494875.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334697046|gb|AEG81843.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|393403148|dbj|BAM27640.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 329
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 159/251 (63%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 199 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VLDTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 259 SDIRSVLDTLEQREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMTKLRDG 318
Query: 513 KRTKHLMQYAI 523
R L YAI
Sbjct: 319 ARADKLRAYAI 329
>gi|229174966|ref|ZP_04302486.1| RNA polymerase sigma factor [Bacillus cereus MM3]
gi|423400859|ref|ZP_17378032.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG2X1-2]
gi|423457457|ref|ZP_17434254.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG5X2-1]
gi|423478436|ref|ZP_17455151.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6X1-1]
gi|228608634|gb|EEK65936.1| RNA polymerase sigma factor [Bacillus cereus MM3]
gi|401147841|gb|EJQ55334.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG5X2-1]
gi|401653849|gb|EJS71392.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG2X1-2]
gi|402428598|gb|EJV60695.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6X1-1]
Length = 375
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 189/343 (55%), Gaps = 52/343 (15%)
Query: 179 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
T+A E+ N +SV G V +DP+R LL+A EE++L+
Sbjct: 83 TKAEEEFDLNDLSVPPG------------VKINDPVRMYLKEIGRVDLLSAEEEIRLATR 130
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
I+ EG E K ++ +N+RLV
Sbjct: 131 IE-----EGDEE-----------------------------------AKRRLAEANLRLV 150
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+
Sbjct: 151 VSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQA 210
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++ +L + P SL
Sbjct: 211 RTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSL 270
Query: 419 DQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 478
+ IG + + I D EA + D + +KE LE VLDTL RE V+R RFGL+D
Sbjct: 271 ETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDD 330
Query: 479 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 331 GRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|374307576|ref|YP_005054007.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
gi|291166412|gb|EFE28458.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
Length = 372
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 168/248 (67%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL ++++ G L K K++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 123 ELAQKMDQGSELAKKKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYT 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 183 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPRPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+++ +S++++ + + P SL+ IG ++ + I D +A + +KE
Sbjct: 243 ISKVMDMSVEKIREIQKISQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSLLKE 302
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL TLN RE++V++ RFGLEDGR +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 303 QLEEVLSTLNEREQKVLKLRFGLEDGRTRTLEEVGKEFDVTRERIRQIEAKALRKLRHPS 362
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 363 RSKKLKDY 370
>gi|89895793|ref|YP_519280.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense Y51]
gi|89335241|dbj|BAE84836.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 367
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 118 ELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYV 177
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 178 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEE 237
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A +S++R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 238 IAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKE 297
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 298 QLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 357
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 358 RSKKLKDY 365
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 134/352 (38%), Positives = 202/352 (57%), Gaps = 20/352 (5%)
Query: 176 ARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
A+ T EK A + V + R+ R + +D +R LL A EE++
Sbjct: 150 AKETATPEKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 209
Query: 235 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 289
L+ I+ L E LR ++ G T AQ +R LN+ G K+
Sbjct: 210 LAKRIEAGLFATERLRRIME--SGEKITTAQ------------KRDLNWISRDGNRAKNH 255
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA
Sbjct: 256 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 315
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 316 ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQ 375
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE V
Sbjct: 376 QYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGV 435
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
VR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 436 VRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 487
>gi|219670224|ref|YP_002460659.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense
DCB-2]
gi|219540484|gb|ACL22223.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Desulfitobacterium hafniense DCB-2]
Length = 372
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 123 ELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYV 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 183 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A +S++R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 243 IAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKE 302
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 303 QLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 362
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 363 RSKKLKDY 370
>gi|225021249|ref|ZP_03710441.1| hypothetical protein CORMATOL_01261 [Corynebacterium matruchotii
ATCC 33806]
gi|224945982|gb|EEG27191.1| hypothetical protein CORMATOL_01261 [Corynebacterium matruchotii
ATCC 33806]
Length = 391
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 163/251 (64%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 141 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 200
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 201 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 260
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 261 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEAADAESAVVASLRH 320
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ V+ TL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE RKL++
Sbjct: 321 SDIRDVIGTLEDREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMRKLRDG 380
Query: 513 KRTKHLMQYAI 523
+R + L +YA+
Sbjct: 381 QRAEKLREYAM 391
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 196/324 (60%), Gaps = 4/324 (1%)
Query: 203 PSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
P Q+ +S D +R LLT +E+ +Q ++ L ++ L+ G P
Sbjct: 8 PKTQKPTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPN 67
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+WA + + EL R + G K KMI +N+RLV++IAK YQ M DL+QEG
Sbjct: 68 LTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSL 127
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL RG EKFD +KG+KFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L
Sbjct: 128 GLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQREL 187
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 441
+ GR E+A+A L ++ L + P SLD ++G NQ+ + SE++ D E +
Sbjct: 188 SQQLGRSATPAEIAKALDLEPAQIREFLSMSRQPISLDVRVGDNQDTELSELLED-EGIS 246
Query: 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501
++ + ++ M++DL +L L P++R+V+ RFGL+DG+ +L +IG+ M +SRER+RQ+
Sbjct: 247 PDNYITQELMRQDLHDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQL 306
Query: 502 ESSAFRKLKNKKRTKHLMQYAITS 525
E A +L ++R ++ +Y + S
Sbjct: 307 EHQALSQL--RRRRSNVKEYIVAS 328
>gi|138896056|ref|YP_001126509.1| RNA polymerase sigma factor RpoD [Geobacillus thermodenitrificans
NG80-2]
gi|196248949|ref|ZP_03147649.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp.
G11MC16]
gi|134267569|gb|ABO67764.1| RNA polymerase sigma factor RpoD [Geobacillus thermodenitrificans
NG80-2]
gi|196211825|gb|EDY06584.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp.
G11MC16]
Length = 375
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 126 ELAKRIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 185
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 186 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE 245
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D EA + + + +KE
Sbjct: 246 IAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKE 305
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 365
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 366 RSKRLKDF 373
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 183/313 (58%), Gaps = 14/313 (4%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLTA EE+ L+ +K+E E G A+ A +
Sbjct: 118 DPVRMYLKEIGKVPLLTAAEEIDLA------MKIEAGVE-----AGEQLEAAEADNAEEL 166
Query: 272 DQRELRR--RLN-YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
+RE RR R+ G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+R E
Sbjct: 167 SRREHRRLTRIEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVE 226
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR
Sbjct: 227 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRE 286
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+AE L+ R+ + + P SL+ IG ++ + + I D A D
Sbjct: 287 PTPEEIAEEMDLTPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDAAVVPPDAASF 346
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
++E L KVLD L RER+V+ RFGLEDG +TL+E+G GV+RERIRQIES K
Sbjct: 347 SMLQEQLTKVLDGLAERERKVISLRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAK 406
Query: 509 LKNKKRTKHLMQY 521
L++ R+ L Y
Sbjct: 407 LRHPSRSSKLKDY 419
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 193/327 (59%), Gaps = 17/327 (5%)
Query: 200 RKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R R S Q++D P +R + LLTA +E++L+ I+ L + L E +R
Sbjct: 8 RVRTSDQDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLLET-GKR 66
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ +R+L + G + ++ +N+RLV+S+AK Y G GM L DL
Sbjct: 67 LSATR------------KRDLALIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDL 114
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 115 IQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLA 174
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L+ + GR + E+A +G+ + ++ +L + P SLD +G ++ + I
Sbjct: 175 RIKRELHQQLGREATDAELANESGIPVDKISDLLDHSRDPVSLDMPVGNDEEAPLGDFIE 234
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA +AE +I + D+ VL TL+ RE+QV+R RFGL+DG+ +TL +IG+L G+SR
Sbjct: 235 DSEATSAESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSR 294
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQYA 522
ER+RQIE KL+ +R L YA
Sbjct: 295 ERVRQIEREVMSKLRKGERADRLRAYA 321
>gi|422412943|ref|ZP_16489902.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL S4-378]
gi|313618909|gb|EFR90770.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL S4-378]
Length = 374
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 126 LAKRIEVGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 185
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 186 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 245
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 305
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 306 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 365
Query: 515 TKHLMQY 521
+K L +
Sbjct: 366 SKQLKDF 372
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ L ++ L E G P+ +WA AA +D+ +L++ ++ G
Sbjct: 23 LLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAANIDELQLQKTISAGEN 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++R IRLP H+ E ++K+A++ L + GR E+A LS K++
Sbjct: 143 IRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLAQQFGRAATINELAAELELSSKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + +++ DP + E+ + ++ DLE+++ L P+
Sbjct: 203 REYLERARQPLSLDLRVGDNQDTELGDLLEDP-GISPEEYVTNSSLQVDLERMMSELTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++QV+ RFGL+D + TL +IG+L+ +SRER+RQIE A KL+ +K
Sbjct: 262 QQQVLTLRFGLKDTQPLTLAKIGDLLNISRERVRQIEREAIAKLRKRK 309
>gi|403380483|ref|ZP_10922540.1| RpoD subfamily RNA polymerase sigma-70 subunit [Paenibacillus sp.
JC66]
Length = 376
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIA+ Y G GM L DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 139 AKKRLAEANLRLVVSIARRYAGRGMLLLDLIQEGNMGLIKAVEKFDYTKGFKFSTYATWW 198
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE + +QL E GR P EE+A+ LS+ ++
Sbjct: 199 IRQAITRSIADQARTIRIPVHMVETMNKFTRVSRQLLQEMGREPTPEEIAKEMELSLDKV 258
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ +G K + I D + D +KE LE VLDTL R
Sbjct: 259 REIMKISQEPVSLETPVGEESESKLGDFIEDHDVMAPSDSAAYTLLKEQLEDVLDTLTDR 318
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGLEDG +TL+E+G++ GV+RERIRQIE+ A RKL++ R++ L +
Sbjct: 319 EENVLRLRFGLEDGNPRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSRRLKDF 374
>gi|339498361|ref|ZP_08659337.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc pseudomesenteroides KCTC 3652]
Length = 432
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 165/253 (65%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ E+ +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEIEIAKRIENGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++E LE VLDTL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|381183523|ref|ZP_09892252.1| RNA polymerase sigma factor RpoD [Listeriaceae bacterium TTU
M1-001]
gi|380316582|gb|EIA19972.1| RNA polymerase sigma factor RpoD [Listeriaceae bacterium TTU
M1-001]
Length = 371
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 123 LAKRIEAGDVEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 182
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 183 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 242
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D EA + D + +KE
Sbjct: 243 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQ 302
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 303 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 362
Query: 515 TKHLMQY 521
+K L +
Sbjct: 363 SKQLKDF 369
>gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis F11]
gi|253798208|ref|YP_003031209.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
1435]
gi|308232219|ref|ZP_07415326.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308369834|ref|ZP_07419229.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308371106|ref|ZP_07423839.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308372374|ref|ZP_07428435.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308373485|ref|ZP_07432499.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308374669|ref|ZP_07436917.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308375503|ref|ZP_07444157.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308377104|ref|ZP_07441142.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308378072|ref|ZP_07481430.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308379289|ref|ZP_07485765.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308380449|ref|ZP_07489983.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|385991992|ref|YP_005910290.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
gi|148722426|gb|ABR07051.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis F11]
gi|253319711|gb|ACT24314.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
1435]
gi|308214646|gb|EFO74045.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308326293|gb|EFP15144.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308329821|gb|EFP18672.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308333464|gb|EFP22315.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308337459|gb|EFP26310.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308341132|gb|EFP29983.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308346083|gb|EFP34934.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308348958|gb|EFP37809.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308353656|gb|EFP42507.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308357503|gb|EFP46354.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308361457|gb|EFP50308.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|339299185|gb|AEJ51295.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
Length = 345
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 95 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 154
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 155 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 214
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 215 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 274
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 275 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 334
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 335 ERADRLRSYA 344
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 232 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 282
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 283 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 342
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 343 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 402
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 403 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 462
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 463 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 518
>gi|15827487|ref|NP_301750.1| RNA polymerase sigma factor SigB [Mycobacterium leprae TN]
gi|221229964|ref|YP_002503380.1| RNA polymerase sigma factor SigB [Mycobacterium leprae Br4923]
gi|699187|gb|AAA62952.1| u1764a [Mycobacterium leprae]
gi|13093037|emb|CAC31395.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933071|emb|CAR71109.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 319
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 159/233 (68%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA
Sbjct: 86 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQA 145
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ +++++ GR +EE+A +G+ +++++ +L
Sbjct: 146 ITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPIEKINDLL 205
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLD +G + + I D EA +AE+ +I + + D+ VL TL+ RE QV
Sbjct: 206 EHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQV 265
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL+N +R L YA
Sbjct: 266 IRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRSYA 318
>gi|451338960|ref|ZP_21909486.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
gi|449418339|gb|EMD23930.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
Length = 317
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 158/240 (65%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA
Sbjct: 77 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR +EE+A +G+
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 196
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
++ +L + P SLD +G ++ + I D EA AE +I +++DL +VL TL
Sbjct: 197 HKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 256
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ RE QV+R R+GL+DG+ +TL +IG+ G+SRER+RQIE KL+ +R L YA
Sbjct: 257 DDRESQVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGERADRLRAYA 316
>gi|75761907|ref|ZP_00741832.1| RNA polymerase sigma factor rpoD [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74490615|gb|EAO53906.1| RNA polymerase sigma factor rpoD [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 268
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 31 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 90
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 91 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 150
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 151 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 210
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 211 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 266
>gi|38233998|ref|NP_939765.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae NCTC
13129]
gi|375291083|ref|YP_005125623.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|376243018|ref|YP_005133870.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|376245915|ref|YP_005136154.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|376248702|ref|YP_005140646.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|376251501|ref|YP_005138382.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|376257315|ref|YP_005145206.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|376287931|ref|YP_005160497.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|376290620|ref|YP_005162867.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|376293422|ref|YP_005165096.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|419860982|ref|ZP_14383622.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38605711|sp|P33118.2|RPSB_CORDI RecName: Full=RNA polymerase sigma factor SigB
gi|38200260|emb|CAE49944.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
gi|371580754|gb|AEX44421.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|371585265|gb|AEX48930.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|372104016|gb|AEX67613.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|372106260|gb|AEX72322.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|372108545|gb|AEX74606.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|372110745|gb|AEX76805.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|372113005|gb|AEX79064.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|372115270|gb|AEX81328.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|372119832|gb|AEX83566.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|387982666|gb|EIK56167.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 329
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 160/250 (64%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 199 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VLDTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 259 SDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDG 318
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 319 ARAEKLRAYA 328
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|375293289|ref|YP_005127828.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|376254504|ref|YP_005142963.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
gi|371582960|gb|AEX46626.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|372117588|gb|AEX70058.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
Length = 329
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 160/250 (64%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 199 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VLDTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 259 SDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDG 318
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 319 ARAEKLRAYA 328
>gi|1657704|gb|AAC44535.1| sigma factor MytB [Mycobacterium tuberculosis]
Length = 345
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 95 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 154
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 155 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 214
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 215 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 274
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 275 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 334
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 335 ERADRLRSYA 344
>gi|418010946|ref|ZP_12650717.1| RNA polymerase sigma factor [Lactobacillus casei Lc-10]
gi|410553525|gb|EKQ27528.1| RNA polymerase sigma factor [Lactobacillus casei Lc-10]
Length = 422
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 185 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 244
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 245 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 304
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 305 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 364
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 365 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHSSRSKQLKDF 420
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 191/300 (63%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR EVA+A + ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D E + + + ++ M++DL+ +L L P+
Sbjct: 212 REYLSLSRQPISLDVRVGDNQDTELSELLED-EGVSPDAYITQESMRQDLQNLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
++ V+ RFGL DG+ +L +IG+ + +SRER+RQ+E+ A +L K+R ++ +Y I S
Sbjct: 271 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQL--KRRRANMAEYIIAS 328
>gi|229098765|ref|ZP_04229703.1| RNA polymerase sigma factor [Bacillus cereus Rock3-29]
gi|229104924|ref|ZP_04235581.1| RNA polymerase sigma factor [Bacillus cereus Rock3-28]
gi|229117789|ref|ZP_04247154.1| RNA polymerase sigma factor [Bacillus cereus Rock1-3]
gi|407706820|ref|YP_006830405.1| hypothetical protein MC28_3584 [Bacillus thuringiensis MC28]
gi|423377849|ref|ZP_17355133.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG1O-2]
gi|423440957|ref|ZP_17417863.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG4X2-1]
gi|423448875|ref|ZP_17425754.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG5O-1]
gi|423464022|ref|ZP_17440790.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6O-1]
gi|423533385|ref|ZP_17509803.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB2-9]
gi|423541360|ref|ZP_17517751.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB4-10]
gi|423547596|ref|ZP_17523954.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB5-5]
gi|423615365|ref|ZP_17591199.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD115]
gi|423622619|ref|ZP_17598397.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD148]
gi|228665652|gb|EEL21129.1| RNA polymerase sigma factor [Bacillus cereus Rock1-3]
gi|228678498|gb|EEL32718.1| RNA polymerase sigma factor [Bacillus cereus Rock3-28]
gi|228684609|gb|EEL38549.1| RNA polymerase sigma factor [Bacillus cereus Rock3-29]
gi|401129469|gb|EJQ37152.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG5O-1]
gi|401172548|gb|EJQ79769.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB4-10]
gi|401179317|gb|EJQ86490.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB5-5]
gi|401260739|gb|EJR66907.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD148]
gi|401261044|gb|EJR67211.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD115]
gi|401636115|gb|EJS53869.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG1O-2]
gi|402417618|gb|EJV49918.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG4X2-1]
gi|402420289|gb|EJV52560.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6O-1]
gi|402463604|gb|EJV95304.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB2-9]
gi|407384505|gb|AFU15006.1| RNA polymerase sigma factor [Bacillus thuringiensis MC28]
Length = 375
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR V+ G + AQ RR LN+
Sbjct: 201 LLNAEEEVELAKRIEAGLFATERLRRVME--AGEKLSVAQ------------RRDLNWIS 246
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 247 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 306
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 307 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 366
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VLD
Sbjct: 367 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLD 426
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 427 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 486
Query: 521 Y 521
Y
Sbjct: 487 Y 487
>gi|206971344|ref|ZP_03232295.1| RNA polymerase sigma-43 factor [Bacillus cereus AH1134]
gi|218899458|ref|YP_002447869.1| RNA polymerase sigma factor RpoD [Bacillus cereus G9842]
gi|228902815|ref|ZP_04066960.1| RNA polymerase sigma factor [Bacillus thuringiensis IBL 4222]
gi|228910126|ref|ZP_04073946.1| RNA polymerase sigma factor [Bacillus thuringiensis IBL 200]
gi|228941457|ref|ZP_04104008.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954576|ref|ZP_04116601.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228967357|ref|ZP_04128392.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228974388|ref|ZP_04134957.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980981|ref|ZP_04141284.1| RNA polymerase sigma factor [Bacillus thuringiensis Bt407]
gi|229071795|ref|ZP_04205010.1| RNA polymerase sigma factor [Bacillus cereus F65185]
gi|229081552|ref|ZP_04214050.1| RNA polymerase sigma factor [Bacillus cereus Rock4-2]
gi|229180570|ref|ZP_04307912.1| RNA polymerase sigma factor [Bacillus cereus 172560W]
gi|229192502|ref|ZP_04319465.1| RNA polymerase sigma factor [Bacillus cereus ATCC 10876]
gi|365158918|ref|ZP_09355106.1| RNA polymerase sigma factor rpoD [Bacillus sp. 7_6_55CFAA_CT2]
gi|384188365|ref|YP_005574261.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402564243|ref|YP_006606967.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis HD-771]
gi|410676682|ref|YP_006929053.1| RNA polymerase sigma factor rpoD [Bacillus thuringiensis Bt407]
gi|423358669|ref|ZP_17336172.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD022]
gi|423385795|ref|ZP_17363051.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG1X1-2]
gi|423411909|ref|ZP_17389029.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG3O-2]
gi|423426427|ref|ZP_17403458.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG3X2-2]
gi|423432305|ref|ZP_17409309.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG4O-1]
gi|423437740|ref|ZP_17414721.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG4X12-1]
gi|423503020|ref|ZP_17479612.1| RNA polymerase sigma factor rpoD [Bacillus cereus HD73]
gi|423527848|ref|ZP_17504293.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB1-1]
gi|423561238|ref|ZP_17537514.1| RNA polymerase sigma factor rpoD [Bacillus cereus MSX-A1]
gi|434377459|ref|YP_006612103.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis HD-789]
gi|449091255|ref|YP_007423696.1| RNA polymerase sigma-43 factor [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452200757|ref|YP_007480838.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|206734116|gb|EDZ51287.1| RNA polymerase sigma-43 factor [Bacillus cereus AH1134]
gi|218541635|gb|ACK94029.1| RNA polymerase sigma-43 factor [Bacillus cereus G9842]
gi|228591079|gb|EEK48935.1| RNA polymerase sigma factor [Bacillus cereus ATCC 10876]
gi|228602994|gb|EEK60473.1| RNA polymerase sigma factor [Bacillus cereus 172560W]
gi|228701757|gb|EEL54245.1| RNA polymerase sigma factor [Bacillus cereus Rock4-2]
gi|228711390|gb|EEL63350.1| RNA polymerase sigma factor [Bacillus cereus F65185]
gi|228778772|gb|EEM27036.1| RNA polymerase sigma factor [Bacillus thuringiensis Bt407]
gi|228785438|gb|EEM33448.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792392|gb|EEM39959.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228805233|gb|EEM51827.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818238|gb|EEM64312.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228849643|gb|EEM94477.1| RNA polymerase sigma factor [Bacillus thuringiensis IBL 200]
gi|228856824|gb|EEN01339.1| RNA polymerase sigma factor [Bacillus thuringiensis IBL 4222]
gi|326942074|gb|AEA17970.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis serovar
chinensis CT-43]
gi|363626082|gb|EHL77086.1| RNA polymerase sigma factor rpoD [Bacillus sp. 7_6_55CFAA_CT2]
gi|401084541|gb|EJP92787.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD022]
gi|401103977|gb|EJQ11954.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG3O-2]
gi|401111174|gb|EJQ19073.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG3X2-2]
gi|401117061|gb|EJQ24899.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG4O-1]
gi|401120895|gb|EJQ28691.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG4X12-1]
gi|401201495|gb|EJR08360.1| RNA polymerase sigma factor rpoD [Bacillus cereus MSX-A1]
gi|401635851|gb|EJS53606.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG1X1-2]
gi|401792895|gb|AFQ18934.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis HD-771]
gi|401876016|gb|AFQ28183.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis HD-789]
gi|402451511|gb|EJV83330.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuB1-1]
gi|402459241|gb|EJV90978.1| RNA polymerase sigma factor rpoD [Bacillus cereus HD73]
gi|409175811|gb|AFV20116.1| RNA polymerase sigma factor rpoD [Bacillus thuringiensis Bt407]
gi|449025012|gb|AGE80175.1| RNA polymerase sigma-43 factor [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452106150|gb|AGG03090.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 375
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|42783418|ref|NP_980665.1| RNA polymerase sigma factor RpoD [Bacillus cereus ATCC 10987]
gi|47567855|ref|ZP_00238563.1| RNA polymerase sigma factor rpoD [Bacillus cereus G9241]
gi|217961783|ref|YP_002340353.1| RNA polymerase sigma factor RpoD [Bacillus cereus AH187]
gi|228916924|ref|ZP_04080486.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228987542|ref|ZP_04147661.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229141030|ref|ZP_04269573.1| RNA polymerase sigma factor [Bacillus cereus BDRD-ST26]
gi|229157906|ref|ZP_04285980.1| RNA polymerase sigma factor [Bacillus cereus ATCC 4342]
gi|229163237|ref|ZP_04291192.1| RNA polymerase sigma factor [Bacillus cereus R309803]
gi|229198419|ref|ZP_04325125.1| RNA polymerase sigma factor [Bacillus cereus m1293]
gi|301055785|ref|YP_003793996.1| RNA polymerase sigma factor [Bacillus cereus biovar anthracis str.
CI]
gi|375286298|ref|YP_005106737.1| RNA polymerase sigma-43 factor [Bacillus cereus NC7401]
gi|384182113|ref|YP_005567875.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|402555572|ref|YP_006596843.1| RNA polymerase sigma factor RpoD [Bacillus cereus FRI-35]
gi|423354787|ref|ZP_17332412.1| RNA polymerase sigma factor rpoD [Bacillus cereus IS075]
gi|423373827|ref|ZP_17351166.1| RNA polymerase sigma factor rpoD [Bacillus cereus AND1407]
gi|423395408|ref|ZP_17372609.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG2X1-1]
gi|423406283|ref|ZP_17383432.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG2X1-3]
gi|423549964|ref|ZP_17526291.1| RNA polymerase sigma factor rpoD [Bacillus cereus ISP3191]
gi|423570534|ref|ZP_17546779.1| RNA polymerase sigma factor rpoD [Bacillus cereus MSX-A12]
gi|423574026|ref|ZP_17550145.1| RNA polymerase sigma factor rpoD [Bacillus cereus MSX-D12]
gi|423604056|ref|ZP_17579949.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD102]
gi|42739347|gb|AAS43273.1| RNA polymerase sigma-43 factor [Bacillus cereus ATCC 10987]
gi|47555532|gb|EAL13875.1| RNA polymerase sigma factor rpoD [Bacillus cereus G9241]
gi|217066780|gb|ACJ81030.1| RNA polymerase sigma-43 factor [Bacillus cereus AH187]
gi|228585119|gb|EEK43231.1| RNA polymerase sigma factor [Bacillus cereus m1293]
gi|228620300|gb|EEK77171.1| RNA polymerase sigma factor [Bacillus cereus R309803]
gi|228625565|gb|EEK82318.1| RNA polymerase sigma factor [Bacillus cereus ATCC 4342]
gi|228642463|gb|EEK98751.1| RNA polymerase sigma factor [Bacillus cereus BDRD-ST26]
gi|228772274|gb|EEM20721.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228842748|gb|EEM87834.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377954|gb|ADK06858.1| RNA polymerase sigma factor [Bacillus cereus biovar anthracis str.
CI]
gi|324328197|gb|ADY23457.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|358354825|dbj|BAL19997.1| RNA polymerase sigma-43 factor [Bacillus cereus NC7401]
gi|401086097|gb|EJP94328.1| RNA polymerase sigma factor rpoD [Bacillus cereus IS075]
gi|401095228|gb|EJQ03288.1| RNA polymerase sigma factor rpoD [Bacillus cereus AND1407]
gi|401189580|gb|EJQ96630.1| RNA polymerase sigma factor rpoD [Bacillus cereus ISP3191]
gi|401203730|gb|EJR10565.1| RNA polymerase sigma factor rpoD [Bacillus cereus MSX-A12]
gi|401212595|gb|EJR19338.1| RNA polymerase sigma factor rpoD [Bacillus cereus MSX-D12]
gi|401245742|gb|EJR52095.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD102]
gi|401654819|gb|EJS72358.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG2X1-1]
gi|401660277|gb|EJS77759.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG2X1-3]
gi|401796782|gb|AFQ10641.1| RNA polymerase sigma factor RpoD [Bacillus cereus FRI-35]
Length = 375
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|449064777|ref|YP_007431860.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
gi|449033285|gb|AGE68712.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 338
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 88 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 147
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 148 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 207
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 208 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 267
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 268 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 327
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 328 ERADRLRSYA 337
>gi|30022370|ref|NP_834001.1| RNA polymerase sigma factor RpoD [Bacillus cereus ATCC 14579]
gi|218232261|ref|YP_002369099.1| RNA polymerase sigma factor RpoD [Bacillus cereus B4264]
gi|228923044|ref|ZP_04086337.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228960557|ref|ZP_04122206.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229048011|ref|ZP_04193587.1| RNA polymerase sigma factor [Bacillus cereus AH676]
gi|229111765|ref|ZP_04241313.1| RNA polymerase sigma factor [Bacillus cereus Rock1-15]
gi|229129569|ref|ZP_04258539.1| RNA polymerase sigma factor [Bacillus cereus BDRD-Cer4]
gi|229146877|ref|ZP_04275242.1| RNA polymerase sigma factor [Bacillus cereus BDRD-ST24]
gi|229152492|ref|ZP_04280684.1| RNA polymerase sigma factor [Bacillus cereus m1550]
gi|296504786|ref|YP_003666486.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis BMB171]
gi|423582502|ref|ZP_17558613.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD014]
gi|423631016|ref|ZP_17606763.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD154]
gi|423634882|ref|ZP_17610535.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD156]
gi|423640626|ref|ZP_17616244.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD166]
gi|423650158|ref|ZP_17625728.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD169]
gi|423657249|ref|ZP_17632548.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD200]
gi|29897928|gb|AAP11202.1| RNA polymerase sigma factor rpoD [Bacillus cereus ATCC 14579]
gi|218160218|gb|ACK60210.1| RNA polymerase sigma-43 factor [Bacillus cereus B4264]
gi|228631100|gb|EEK87737.1| RNA polymerase sigma factor [Bacillus cereus m1550]
gi|228636705|gb|EEK93170.1| RNA polymerase sigma factor [Bacillus cereus BDRD-ST24]
gi|228653886|gb|EEL09754.1| RNA polymerase sigma factor [Bacillus cereus BDRD-Cer4]
gi|228671759|gb|EEL27055.1| RNA polymerase sigma factor [Bacillus cereus Rock1-15]
gi|228723468|gb|EEL74837.1| RNA polymerase sigma factor [Bacillus cereus AH676]
gi|228799157|gb|EEM46125.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228836677|gb|EEM82025.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325838|gb|ADH08766.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis BMB171]
gi|401213381|gb|EJR20122.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD014]
gi|401264383|gb|EJR70495.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD154]
gi|401278868|gb|EJR84798.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD156]
gi|401279687|gb|EJR85609.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD166]
gi|401282576|gb|EJR88475.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD169]
gi|401289992|gb|EJR95696.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD200]
Length = 375
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|222097738|ref|YP_002531795.1| RNA polymerase sigma factor rpod [Bacillus cereus Q1]
gi|221241796|gb|ACM14506.1| RNA polymerase sigma-43 factor [Bacillus cereus Q1]
Length = 375
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAGEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|418070721|ref|ZP_12707996.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus R0011]
gi|423078927|ref|ZP_17067603.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus ATCC
21052]
gi|357540141|gb|EHJ24158.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus R0011]
gi|357548830|gb|EHJ30689.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus ATCC
21052]
Length = 416
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 179 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 238
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 239 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 298
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 299 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 358
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 359 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 414
>gi|300858635|ref|YP_003783618.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|375288814|ref|YP_005123355.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|379715514|ref|YP_005303851.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|383314397|ref|YP_005375252.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|384504818|ref|YP_005681488.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|384506912|ref|YP_005683581.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|384508999|ref|YP_005685667.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|384511091|ref|YP_005690669.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|385807697|ref|YP_005844094.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|386740547|ref|YP_006213727.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|387136741|ref|YP_005692721.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|387138813|ref|YP_005694792.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387140805|ref|YP_005696783.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389850565|ref|YP_006352800.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
gi|300686089|gb|ADK29011.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|302206344|gb|ADL10686.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|302330901|gb|ADL21095.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|308276586|gb|ADO26485.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|341825030|gb|AEK92551.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|348607186|gb|AEP70459.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|349735291|gb|AEQ06769.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355392596|gb|AER69261.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|371576103|gb|AEX39706.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|377654220|gb|AFB72569.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|380869898|gb|AFF22372.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|383805090|gb|AFH52169.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|384477241|gb|AFH91037.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|388247871|gb|AFK16862.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
Length = 329
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 159/251 (63%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 199 ELAEESGIDESKIEILLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VLDTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 259 SDIRSVLDTLERREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMTKLRDG 318
Query: 513 KRTKHLMQYAI 523
R L YAI
Sbjct: 319 ARADKLRAYAI 329
>gi|305681000|ref|ZP_07403807.1| RNA polymerase sigma factor SigB [Corynebacterium matruchotii ATCC
14266]
gi|305659205|gb|EFM48705.1| RNA polymerase sigma factor SigB [Corynebacterium matruchotii ATCC
14266]
Length = 365
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 163/251 (64%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 115 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 174
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 175 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 234
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 235 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEAADAESAVVASLRH 294
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ V+ TL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE RKL++
Sbjct: 295 SDIRDVIGTLEDREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMRKLRDG 354
Query: 513 KRTKHLMQYAI 523
+R + L +YA+
Sbjct: 355 QRAEKLREYAM 365
>gi|199598416|ref|ZP_03211835.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus HN001]
gi|258508506|ref|YP_003171257.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus GG]
gi|385828171|ref|YP_005865943.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus GG]
gi|199590735|gb|EDY98822.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus HN001]
gi|257148433|emb|CAR87406.1| RNA polymerase sigma factor [Lactobacillus rhamnosus GG]
gi|259649816|dbj|BAI41978.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus GG]
Length = 416
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 179 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 238
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 239 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 298
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 299 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 358
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 359 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 414
>gi|399517211|ref|ZP_10758767.1| RNA polymerase sigma factor RpoD [Leuconostoc pseudomesenteroides
4882]
gi|398647837|emb|CCJ66794.1| RNA polymerase sigma factor RpoD [Leuconostoc pseudomesenteroides
4882]
Length = 432
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 165/253 (65%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ E+ +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEIEIAKRIENGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++E LE VLDTL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|154686781|ref|YP_001421942.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens FZB42]
gi|375363053|ref|YP_005131092.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384266131|ref|YP_005421838.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385265518|ref|ZP_10043605.1| RNA polymerase sigma factor RpoD [Bacillus sp. 5B6]
gi|387899153|ref|YP_006329449.1| polymerase primary sigma factor [Bacillus amyloliquefaciens Y2]
gi|394992081|ref|ZP_10384874.1| RNA polymerase sigma factor RpoD [Bacillus sp. 916]
gi|421730962|ref|ZP_16170088.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505928|ref|YP_007187112.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346274|ref|YP_007444905.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens IT-45]
gi|452856284|ref|YP_007497967.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|154352632|gb|ABS74711.1| RpoD [Bacillus amyloliquefaciens FZB42]
gi|371569047|emb|CCF05897.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380499484|emb|CCG50522.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385150014|gb|EIF13951.1| RNA polymerase sigma factor RpoD [Bacillus sp. 5B6]
gi|387173263|gb|AFJ62724.1| polymerase primary sigma factor [Bacillus amyloliquefaciens Y2]
gi|393807097|gb|EJD68423.1| RNA polymerase sigma factor RpoD [Bacillus sp. 916]
gi|407075116|gb|EKE48103.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429487518|gb|AFZ91442.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850032|gb|AGF27024.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens IT-45]
gi|452080544|emb|CCP22307.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 373
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 136 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|229086862|ref|ZP_04219022.1| RNA polymerase sigma factor [Bacillus cereus Rock3-44]
gi|228696437|gb|EEL49262.1| RNA polymerase sigma factor [Bacillus cereus Rock3-44]
Length = 373
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|229031941|ref|ZP_04187928.1| RNA polymerase sigma factor [Bacillus cereus AH1271]
gi|228729405|gb|EEL80395.1| RNA polymerase sigma factor [Bacillus cereus AH1271]
Length = 375
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|163942050|ref|YP_001646934.1| RNA polymerase sigma factor RpoD [Bacillus weihenstephanensis
KBAB4]
gi|229013514|ref|ZP_04170648.1| RNA polymerase sigma factor [Bacillus mycoides DSM 2048]
gi|229019517|ref|ZP_04176334.1| RNA polymerase sigma factor [Bacillus cereus AH1273]
gi|229025758|ref|ZP_04182158.1| RNA polymerase sigma factor [Bacillus cereus AH1272]
gi|229061987|ref|ZP_04199313.1| RNA polymerase sigma factor [Bacillus cereus AH603]
gi|229135118|ref|ZP_04263920.1| RNA polymerase sigma factor [Bacillus cereus BDRD-ST196]
gi|229169042|ref|ZP_04296758.1| RNA polymerase sigma factor [Bacillus cereus AH621]
gi|423368345|ref|ZP_17345777.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD142]
gi|423389389|ref|ZP_17366615.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG1X1-3]
gi|423417781|ref|ZP_17394870.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG3X2-1]
gi|423452403|ref|ZP_17429256.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG5X1-1]
gi|423470510|ref|ZP_17447254.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6O-2]
gi|423483877|ref|ZP_17460567.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6X1-2]
gi|423489478|ref|ZP_17466160.1| RNA polymerase sigma factor rpoD [Bacillus cereus BtB2-4]
gi|423495201|ref|ZP_17471845.1| RNA polymerase sigma factor rpoD [Bacillus cereus CER057]
gi|423498005|ref|ZP_17474622.1| RNA polymerase sigma factor rpoD [Bacillus cereus CER074]
gi|423512408|ref|ZP_17488939.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuA2-1]
gi|423518994|ref|ZP_17495475.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuA2-4]
gi|423521847|ref|ZP_17498320.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuA4-10]
gi|423558123|ref|ZP_17534425.1| RNA polymerase sigma factor rpoD [Bacillus cereus MC67]
gi|423591710|ref|ZP_17567741.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD048]
gi|423598389|ref|ZP_17574389.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD078]
gi|423612505|ref|ZP_17588366.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD107]
gi|423660861|ref|ZP_17636030.1| RNA polymerase sigma factor rpoD [Bacillus cereus VDM022]
gi|423669878|ref|ZP_17644907.1| RNA polymerase sigma factor rpoD [Bacillus cereus VDM034]
gi|423673916|ref|ZP_17648855.1| RNA polymerase sigma factor rpoD [Bacillus cereus VDM062]
gi|163864247|gb|ABY45306.1| RNA polymerase, sigma 70 subunit, RpoD family [Bacillus
weihenstephanensis KBAB4]
gi|228614451|gb|EEK71560.1| RNA polymerase sigma factor [Bacillus cereus AH621]
gi|228648347|gb|EEL04380.1| RNA polymerase sigma factor [Bacillus cereus BDRD-ST196]
gi|228717296|gb|EEL68969.1| RNA polymerase sigma factor [Bacillus cereus AH603]
gi|228735541|gb|EEL86136.1| RNA polymerase sigma factor [Bacillus cereus AH1272]
gi|228741773|gb|EEL91956.1| RNA polymerase sigma factor [Bacillus cereus AH1273]
gi|228747751|gb|EEL97620.1| RNA polymerase sigma factor [Bacillus mycoides DSM 2048]
gi|401080944|gb|EJP89225.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD142]
gi|401106952|gb|EJQ14909.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG3X2-1]
gi|401140041|gb|EJQ47598.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG5X1-1]
gi|401141428|gb|EJQ48983.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6X1-2]
gi|401151294|gb|EJQ58746.1| RNA polymerase sigma factor rpoD [Bacillus cereus CER057]
gi|401160049|gb|EJQ67428.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuA2-4]
gi|401161292|gb|EJQ68659.1| RNA polymerase sigma factor rpoD [Bacillus cereus CER074]
gi|401176509|gb|EJQ83704.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuA4-10]
gi|401191391|gb|EJQ98413.1| RNA polymerase sigma factor rpoD [Bacillus cereus MC67]
gi|401231843|gb|EJR38345.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD048]
gi|401236659|gb|EJR43116.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD078]
gi|401246094|gb|EJR52446.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD107]
gi|401299005|gb|EJS04605.1| RNA polymerase sigma factor rpoD [Bacillus cereus VDM034]
gi|401300902|gb|EJS06491.1| RNA polymerase sigma factor rpoD [Bacillus cereus VDM022]
gi|401310282|gb|EJS15607.1| RNA polymerase sigma factor rpoD [Bacillus cereus VDM062]
gi|401641480|gb|EJS59197.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG1X1-3]
gi|402431714|gb|EJV63778.1| RNA polymerase sigma factor rpoD [Bacillus cereus BtB2-4]
gi|402436176|gb|EJV68208.1| RNA polymerase sigma factor rpoD [Bacillus cereus BAG6O-2]
gi|402449379|gb|EJV81216.1| RNA polymerase sigma factor rpoD [Bacillus cereus HuA2-1]
Length = 375
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|118618673|ref|YP_907005.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
gi|118570783|gb|ABL05534.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
Length = 323
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 167/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 73 KRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREIHQNLGREATDE 192
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++++ +L + P SLD +G ++ + I D EA +AE+ +I + +
Sbjct: 193 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAELLH 252
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHG 312
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 313 ERADRLRSYA 322
>gi|30264362|ref|NP_846739.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. Ames]
gi|47529811|ref|YP_021160.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187190|ref|YP_030442.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. Sterne]
gi|49481307|ref|YP_038350.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141207|ref|YP_085621.1| RNA polymerase sigma factor RpoD [Bacillus cereus E33L]
gi|65321666|ref|ZP_00394625.1| COG0568: DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Bacillus anthracis str. A2012]
gi|118479464|ref|YP_896615.1| RNA polymerase sigma factor RpoD [Bacillus thuringiensis str. Al
Hakam]
gi|165872043|ref|ZP_02216683.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0488]
gi|167634513|ref|ZP_02392833.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0442]
gi|167638663|ref|ZP_02396939.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0193]
gi|170687516|ref|ZP_02878733.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0465]
gi|170707362|ref|ZP_02897816.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0389]
gi|196046412|ref|ZP_03113638.1| RNA polymerase sigma-43 factor [Bacillus cereus 03BB108]
gi|218905429|ref|YP_002453263.1| RNA polymerase sigma factor RpoD [Bacillus cereus AH820]
gi|225866273|ref|YP_002751651.1| RNA polymerase sigma-43 factor [Bacillus cereus 03BB102]
gi|228929335|ref|ZP_04092360.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935612|ref|ZP_04098427.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948006|ref|ZP_04110292.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093361|ref|ZP_04224468.1| RNA polymerase sigma factor [Bacillus cereus Rock3-42]
gi|229123831|ref|ZP_04253025.1| RNA polymerase sigma factor [Bacillus cereus 95/8201]
gi|229186532|ref|ZP_04313694.1| RNA polymerase sigma factor [Bacillus cereus BGSC 6E1]
gi|229601154|ref|YP_002868581.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. A0248]
gi|254684050|ref|ZP_05147910.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str.
CNEVA-9066]
gi|254736399|ref|ZP_05194105.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. Western
North America USA6153]
gi|254741437|ref|ZP_05199124.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. Kruger B]
gi|254757799|ref|ZP_05209826.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. Australia
94]
gi|376268189|ref|YP_005120901.1| RNA polymerase sigma factor RpoD [Bacillus cereus F837/76]
gi|386738182|ref|YP_006211363.1| RpoD family RNA polymerase sigma-70 subunit [Bacillus anthracis
str. H9401]
gi|421506548|ref|ZP_15953471.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. UR-1]
gi|421638370|ref|ZP_16078966.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. BF1]
gi|30259020|gb|AAP28225.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. Ames]
gi|47504959|gb|AAT33635.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181117|gb|AAT56493.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. Sterne]
gi|49332863|gb|AAT63509.1| RNA polymerase sigma-43 factor [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974676|gb|AAU16226.1| RNA polymerase sigma-43 factor [Bacillus cereus E33L]
gi|118418689|gb|ABK87108.1| RNA polymerase sigma-43 factor [Bacillus thuringiensis str. Al
Hakam]
gi|164712174|gb|EDR17711.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0488]
gi|167513511|gb|EDR88881.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0193]
gi|167529965|gb|EDR92700.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0442]
gi|170127606|gb|EDS96479.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0389]
gi|170668711|gb|EDT19457.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0465]
gi|196022882|gb|EDX61563.1| RNA polymerase sigma-43 factor [Bacillus cereus 03BB108]
gi|218536133|gb|ACK88531.1| RNA polymerase sigma-43 factor [Bacillus cereus AH820]
gi|225787167|gb|ACO27384.1| RNA polymerase sigma-43 factor [Bacillus cereus 03BB102]
gi|228596963|gb|EEK54621.1| RNA polymerase sigma factor [Bacillus cereus BGSC 6E1]
gi|228659652|gb|EEL15298.1| RNA polymerase sigma factor [Bacillus cereus 95/8201]
gi|228690017|gb|EEL43818.1| RNA polymerase sigma factor [Bacillus cereus Rock3-42]
gi|228811696|gb|EEM58031.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824052|gb|EEM69869.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830349|gb|EEM75961.1| RNA polymerase sigma factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229265562|gb|ACQ47199.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. A0248]
gi|364513989|gb|AEW57388.1| RNA polymerase sigma factor RpoD [Bacillus cereus F837/76]
gi|384388034|gb|AFH85695.1| RNA polymerase, sigma 70 subunit, RpoD family [Bacillus anthracis
str. H9401]
gi|401823541|gb|EJT22688.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. UR-1]
gi|403394796|gb|EJY92036.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. BF1]
Length = 373
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|424714330|ref|YP_007015045.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes serotype
4b str. LL195]
gi|424013514|emb|CCO64054.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes serotype
4b str. LL195]
Length = 383
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 135 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 194
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 195 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 254
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 255 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 314
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 315 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 374
Query: 515 TKHLMQY 521
+K L +
Sbjct: 375 SKQLKDF 381
>gi|366085904|ref|ZP_09452389.1| RNA polymerase sigma factor RpoD [Lactobacillus zeae KCTC 3804]
Length = 416
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 179 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 238
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 239 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 298
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 299 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 358
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 359 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 414
>gi|228993035|ref|ZP_04152958.1| RNA polymerase sigma factor [Bacillus pseudomycoides DSM 12442]
gi|228999085|ref|ZP_04158667.1| RNA polymerase sigma factor [Bacillus mycoides Rock3-17]
gi|229006633|ref|ZP_04164267.1| RNA polymerase sigma factor [Bacillus mycoides Rock1-4]
gi|228754494|gb|EEM03905.1| RNA polymerase sigma factor [Bacillus mycoides Rock1-4]
gi|228760702|gb|EEM09666.1| RNA polymerase sigma factor [Bacillus mycoides Rock3-17]
gi|228766683|gb|EEM15323.1| RNA polymerase sigma factor [Bacillus pseudomycoides DSM 12442]
Length = 373
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|300765597|ref|ZP_07075576.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N1-017]
gi|300513698|gb|EFK40766.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N1-017]
Length = 374
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 126 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 185
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 186 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 245
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 305
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 306 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 365
Query: 515 TKHLMQY 521
+K L +
Sbjct: 366 SKQLKDF 372
>gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|254551766|ref|ZP_05142213.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746512|ref|ZP_06505890.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|294994199|ref|ZP_06799890.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis 210]
gi|297635318|ref|ZP_06953098.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
4207]
gi|297732314|ref|ZP_06961432.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
R506]
gi|375295476|ref|YP_005099743.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|385995613|ref|YP_005913911.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|392431684|ref|YP_006472728.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
gi|422813758|ref|ZP_16862130.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|424948366|ref|ZP_18364062.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|289687040|gb|EFD54528.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|323718704|gb|EGB27866.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|328457981|gb|AEB03404.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|339295567|gb|AEJ47678.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|358232881|dbj|GAA46373.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|392053093|gb|AFM48651.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
Length = 333
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 142
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 143 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 202
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 203 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 262
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 263 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 322
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 323 ERADRLRSYA 332
>gi|415885546|ref|ZP_11547474.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus MGA3]
gi|387591215|gb|EIJ83534.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus MGA3]
Length = 375
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 126 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 185
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 186 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE 245
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 IAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKE 305
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 365
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 366 RSKRLKDF 373
>gi|442804827|ref|YP_007372976.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740677|gb|AGC68366.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 443
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 158/235 (67%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI
Sbjct: 207 KKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWWI 266
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S++++
Sbjct: 267 RQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAQEMGMSVEKVR 326
Query: 407 AVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRE 466
++ + P SL+ IG ++ + I D +A ++ +KE L VLDTL PRE
Sbjct: 327 EIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPDESAAFTLLKEQLMDVLDTLTPRE 386
Query: 467 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 387 EKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDY 441
>gi|227817068|ref|YP_002817077.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. CDC 684]
gi|227007300|gb|ACP17043.1| RNA polymerase sigma-43 factor [Bacillus anthracis str. CDC 684]
Length = 373
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|421768689|ref|ZP_16205399.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP2]
gi|421771160|ref|ZP_16207821.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP3]
gi|411185538|gb|EKS52665.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP2]
gi|411186595|gb|EKS53719.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP3]
Length = 416
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 179 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 238
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 239 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 298
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 299 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 358
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 359 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 414
>gi|229552308|ref|ZP_04441033.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
rhamnosus LMS2-1]
gi|385835366|ref|YP_005873140.1| RNA polymerase sigma factor rpoD [Lactobacillus rhamnosus ATCC
8530]
gi|229314290|gb|EEN80263.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
rhamnosus LMS2-1]
gi|355394857|gb|AER64287.1| RNA polymerase sigma factor rpoD [Lactobacillus rhamnosus ATCC
8530]
Length = 416
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 179 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 238
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 239 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 298
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 299 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 358
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 359 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 414
>gi|157693020|ref|YP_001487482.1| RNA polymerase sigma factor RpoD [Bacillus pumilus SAFR-032]
gi|389571818|ref|ZP_10161906.1| RNA polymerase sigma factor RpoD [Bacillus sp. M 2-6]
gi|407978487|ref|ZP_11159318.1| RNA polymerase sigma factor RpoD [Bacillus sp. HYC-10]
gi|157681778|gb|ABV62922.1| DNA-directed RNA polymerase sigma subunit SigA [Bacillus pumilus
SAFR-032]
gi|388428304|gb|EIL86101.1| RNA polymerase sigma factor RpoD [Bacillus sp. M 2-6]
gi|407415045|gb|EKF36661.1| RNA polymerase sigma factor RpoD [Bacillus sp. HYC-10]
Length = 373
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 136 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|255972833|ref|ZP_05423419.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T1]
gi|255963851|gb|EET96327.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T1]
Length = 368
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 188/342 (54%), Gaps = 52/342 (15%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
+ AEKA A +S +G V +DP+R +LLTA EE++L+ I
Sbjct: 77 KEAEKAQAEDLSAPTG------------VKINDPVRMYLKEIGRVQLLTAAEEVELALKI 124
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
+ EG +E K ++ +N+RLV+
Sbjct: 125 E-----EGDQE-----------------------------------AKQRLAEANLRLVV 144
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+R
Sbjct: 145 SIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQAR 204
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIR+P HMVE ++ ++QL + GR P EE+ L +++ +L + P SL+
Sbjct: 205 TIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLE 264
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
IG + + I D +A + + + +KE LE VLDTL RE V+R RFGL+DG
Sbjct: 265 TPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDG 324
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 325 RTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|311069121|ref|YP_003974044.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus 1942]
gi|419820232|ref|ZP_14343844.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus C89]
gi|310869638|gb|ADP33113.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus 1942]
gi|388475644|gb|EIM12355.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus C89]
Length = 373
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 136 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|312110191|ref|YP_003988507.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
Y4.1MC1]
gi|336234655|ref|YP_004587271.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|423719224|ref|ZP_17693406.1| RNA polymerase, rpoD subfamily, sigma-70 subunit [Geobacillus
thermoglucosidans TNO-09.020]
gi|311215292|gb|ADP73896.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y4.1MC1]
gi|335361510|gb|AEH47190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus
thermoglucosidasius C56-YS93]
gi|383368127|gb|EID45402.1| RNA polymerase, rpoD subfamily, sigma-70 subunit [Geobacillus
thermoglucosidans TNO-09.020]
Length = 377
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 128 ELAKRIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 187
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 188 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE 247
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D EA + + + +KE
Sbjct: 248 IAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKE 307
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 308 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 367
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 368 RSKRLKDF 375
>gi|308233952|ref|ZP_07664689.1| RNA polymerase, sigma 70 subunit, RpoD [Atopobium vaginae DSM
15829]
gi|328943964|ref|ZP_08241429.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
gi|327491933|gb|EGF23707.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
Length = 441
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 185/343 (53%), Gaps = 27/343 (7%)
Query: 191 SVKSGSTSRRKRPSVQEVDYS------DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
+ K S R R + +D S DP+R LL A+EE+ L+ IQ
Sbjct: 111 ATKKRSNKRSSRARTRRIDSSAVMLTGDPVRMYLKEIGKVDLLNASEEVHLAMKIQ---- 166
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRRRLNYGILCKDKMITSNIRLV 298
G + AA G +QR L R G+ K + ++N+RL
Sbjct: 167 -----------AGTDASKKLEAAENGEIELTRAEQRRLMRIEQVGLDAKQALTSANLRLT 215
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+
Sbjct: 216 VSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQA 275
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIR+P HMVE ++ +K+L + GR P EE+ E +S R+ + + P SL
Sbjct: 276 RTIRIPVHMVETINKLVRVQKELLQDLGREPTPEEIGEQMKMSADRVREIQKISQEPVSL 335
Query: 419 DQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 478
+ IG ++ + I D A D ++E L +VLD L RER+V+++RFGLED
Sbjct: 336 ETPIGEEEDSSLGDFIEDSTAVAPPDAASDSMLREQLNQVLDGLADRERKVIKFRFGLED 395
Query: 479 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
G +TL+E+G GV+RERIRQIES KL++ R+ L Y
Sbjct: 396 GHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSGRLKDY 438
>gi|402816528|ref|ZP_10866118.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
gi|402505430|gb|EJW15955.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
Length = 298
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 168/248 (67%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGILCKDKMIT-SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+L +R+ G KM+T +N+RLV+SIA+ Y G GM+L DL+QEG GL++ +KFD +
Sbjct: 49 DLAKRIAEGDEEAKKMLTEANLRLVVSIARRYAGRGMSLLDLIQEGNMGLIKAVDKFDYT 108
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HM+E ++ +QL E GR P EE
Sbjct: 109 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRVSRQLVQELGREPEVEE 168
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ LS++++ ++ + P SL+ IG + K + I D +A++ + + +K
Sbjct: 169 IAKEMELSVEKVREIMKISQDPISLETPIGEEHDTKLGDFIEDQDAQSPVESAAYESLKT 228
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 229 QLGDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPS 288
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 289 RSKRLKDY 296
>gi|258539717|ref|YP_003174216.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus Lc 705]
gi|257151393|emb|CAR90365.1| RNA polymerase sigma factor [Lactobacillus rhamnosus Lc 705]
Length = 416
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 179 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 238
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 239 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 298
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 299 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 358
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 359 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 414
>gi|308174309|ref|YP_003921014.1| RpoD [Bacillus amyloliquefaciens DSM 7]
gi|384160167|ref|YP_005542240.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens TA208]
gi|384165097|ref|YP_005546476.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens LL3]
gi|384169236|ref|YP_005550614.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens XH7]
gi|307607173|emb|CBI43544.1| RpoD [Bacillus amyloliquefaciens DSM 7]
gi|328554255|gb|AEB24747.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens TA208]
gi|328912652|gb|AEB64248.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens LL3]
gi|341828515|gb|AEK89766.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens XH7]
Length = 373
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 136 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 199/306 (65%), Gaps = 3/306 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LLT EE+ + +Q L+ LE L+E L ++ G PT ++WAA
Sbjct: 6 NFTDPVRAYLREIGRVP-LLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAA 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + ELR + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTLGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL ENGR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQENGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
E+A+ L+ K++ L + P SLD ++G N + + E++ D ED I
Sbjct: 185 AATIAELAQELELTPKQVREYLERARQPLSLDLRVGDNHDTELGELLEDT-GLLPEDYAI 243
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++ DLEK++ L P++R+V+ RFGL DG+ TL +IG + +SRER+RQIE A
Sbjct: 244 HSSLQLDLEKLMADLTPQQREVLALRFGLTDGKPLTLAKIGIRLNISRERVRQIEREALS 303
Query: 508 KLKNKK 513
KL+ +K
Sbjct: 304 KLRQRK 309
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGGR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893958|gb|EFG73726.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 329
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 166/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 RRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 139 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 199 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 259 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 318
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 319 ERADRLRSYA 328
>gi|16803494|ref|NP_464979.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes EGD-e]
gi|46907682|ref|YP_014071.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. F2365]
gi|47092744|ref|ZP_00230530.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes str. 4b
H7858]
gi|47095405|ref|ZP_00233015.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes str. 1/2a
F6854]
gi|226224055|ref|YP_002758162.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|254824487|ref|ZP_05229488.1| RNA polymerase subunit sigma [Listeria monocytogenes FSL J1-194]
gi|254827742|ref|ZP_05232429.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N3-165]
gi|254852080|ref|ZP_05241428.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
R2-503]
gi|254912128|ref|ZP_05262140.1| sigma 43 subunit of RNA polymerase [Listeria monocytogenes J2818]
gi|254932639|ref|ZP_05265998.1| RNA polymerase subunit sigma [Listeria monocytogenes HPB2262]
gi|254936456|ref|ZP_05268153.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes F6900]
gi|254994146|ref|ZP_05276336.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J2-064]
gi|255029176|ref|ZP_05301127.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes LO28]
gi|255522085|ref|ZP_05389322.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J1-175]
gi|284801841|ref|YP_003413706.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5578]
gi|284994983|ref|YP_003416751.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5923]
gi|315282349|ref|ZP_07870778.1| RNA polymerase sigma factor RpoD [Listeria marthii FSL S4-120]
gi|386043765|ref|YP_005962570.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes 10403S]
gi|386047106|ref|YP_005965438.1| RNA polymerase:subunit sigma [Listeria monocytogenes J0161]
gi|386050430|ref|YP_005968421.1| RNA polymerase:subunit sigma [Listeria monocytogenes FSL R2-561]
gi|386053707|ref|YP_005971265.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes Finland
1998]
gi|386732193|ref|YP_006205689.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 07PF0776]
gi|404281011|ref|YP_006681909.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2755]
gi|404283946|ref|YP_006684843.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2372]
gi|404286876|ref|YP_006693462.1| RNA polymerase sigma-A factor [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|404410753|ref|YP_006696341.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC5850]
gi|404413532|ref|YP_006699119.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC7179]
gi|405749798|ref|YP_006673264.1| RNA polymerase sigma-A factor [Listeria monocytogenes ATCC 19117]
gi|405752674|ref|YP_006676139.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2378]
gi|405755612|ref|YP_006679076.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2540]
gi|405758502|ref|YP_006687778.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2479]
gi|406704227|ref|YP_006754581.1| RNA polymerase sigma-A factor [Listeria monocytogenes L312]
gi|417316000|ref|ZP_12102658.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes J1816]
gi|424823215|ref|ZP_18248228.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes str. Scott
A]
gi|1710684|sp|P52331.1|RPOD_LISMO RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43
gi|664756|gb|AAC43306.1| sigma 43 subunit of RNA polymerase [Listeria monocytogenes]
gi|16410883|emb|CAC99532.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes EGD-e]
gi|46880950|gb|AAT04248.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. F2365]
gi|47016226|gb|EAL07149.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
1/2a str. F6854]
gi|47018932|gb|EAL09679.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. H7858]
gi|225876517|emb|CAS05226.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258600121|gb|EEW13446.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N3-165]
gi|258605378|gb|EEW17986.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
R2-503]
gi|258609048|gb|EEW21656.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes F6900]
gi|284057403|gb|ADB68344.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5578]
gi|284060450|gb|ADB71389.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5923]
gi|293584198|gb|EFF96230.1| RNA polymerase subunit sigma [Listeria monocytogenes HPB2262]
gi|293590099|gb|EFF98433.1| sigma 43 subunit of RNA polymerase [Listeria monocytogenes J2818]
gi|293593725|gb|EFG01486.1| RNA polymerase subunit sigma [Listeria monocytogenes FSL J1-194]
gi|313614010|gb|EFR87725.1| RNA polymerase sigma factor RpoD [Listeria marthii FSL S4-120]
gi|328465497|gb|EGF36726.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes J1816]
gi|332311895|gb|EGJ24990.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes str. Scott
A]
gi|345534097|gb|AEO03538.1| RNA polymerase:subunit sigma [Listeria monocytogenes J0161]
gi|345536999|gb|AEO06439.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes 10403S]
gi|346424276|gb|AEO25801.1| RNA polymerase:subunit sigma [Listeria monocytogenes FSL R2-561]
gi|346646358|gb|AEO38983.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes Finland
1998]
gi|384390951|gb|AFH80021.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 07PF0776]
gi|404218998|emb|CBY70362.1| RNA polymerase sigma-A factor [Listeria monocytogenes ATCC 19117]
gi|404221874|emb|CBY73237.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2378]
gi|404224812|emb|CBY76174.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2540]
gi|404227646|emb|CBY49051.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2755]
gi|404230579|emb|CBY51983.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC5850]
gi|404233448|emb|CBY54851.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2372]
gi|404236384|emb|CBY57786.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2479]
gi|404239231|emb|CBY60632.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC7179]
gi|404245805|emb|CBY04030.1| RNA polymerase sigma-A factor [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|406361257|emb|CBY67530.1| RNA polymerase sigma-A factor [Listeria monocytogenes L312]
gi|441471138|emb|CCQ20893.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes]
gi|441474266|emb|CCQ24020.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes N53-1]
gi|1093602|prf||2104269C RNA polymerase:SUBUNIT=sigma
Length = 374
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 126 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 185
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 186 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 245
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 305
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 306 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 365
Query: 515 TKHLMQY 521
+K L +
Sbjct: 366 SKQLKDF 372
>gi|338813221|ref|ZP_08625355.1| RNA polymerase sigma factor RpoD [Acetonema longum DSM 6540]
gi|337274828|gb|EGO63331.1| RNA polymerase sigma factor RpoD [Acetonema longum DSM 6540]
Length = 701
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 163/244 (66%)
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
+ + G + K + +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+K
Sbjct: 456 KYIEQGEMAKRSLSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYK 515
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A A
Sbjct: 516 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPVPEEIARA 575
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEK 457
+S++R+ ++ + P SL+ IG ++ + I D +A + +KE LE+
Sbjct: 576 MDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEE 635
Query: 458 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517
VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K
Sbjct: 636 VLETLTPREEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKK 695
Query: 518 LMQY 521
L +
Sbjct: 696 LKDF 699
>gi|16800559|ref|NP_470827.1| RNA polymerase sigma factor RpoD [Listeria innocua Clip11262]
gi|116872885|ref|YP_849666.1| RNA polymerase sigma factor RpoD [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217964400|ref|YP_002350078.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes HCC23]
gi|290894216|ref|ZP_06557185.1| rpoD protein [Listeria monocytogenes FSL J2-071]
gi|347548840|ref|YP_004855168.1| putative RNA polymerase sigma factor RpoD [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|386008225|ref|YP_005926503.1| RNA polymerase sigma factor [Listeria monocytogenes L99]
gi|386026826|ref|YP_005947602.1| RNA polymerase, sigma-70 (primary) subunit [Listeria monocytogenes
M7]
gi|404407892|ref|YP_006690607.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2376]
gi|422415957|ref|ZP_16492914.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL J1-023]
gi|422809535|ref|ZP_16857946.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J1-208]
gi|20140102|sp|Q92BQ6.1|RPOD_LISIN RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43
gi|16413964|emb|CAC96722.1| RNA polymerase sigma factor RpoD [Listeria innocua Clip11262]
gi|116741763|emb|CAK20887.1| RNA polymerase sigma factor RpoD (Sigma-A) [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|217333670|gb|ACK39464.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43) [Listeria
monocytogenes HCC23]
gi|290556213|gb|EFD89758.1| rpoD protein [Listeria monocytogenes FSL J2-071]
gi|307571035|emb|CAR84214.1| RNA polymerase sigma factor [Listeria monocytogenes L99]
gi|313623755|gb|EFR93895.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL J1-023]
gi|336023407|gb|AEH92544.1| RNA polymerase, sigma-70 (primary) subunit [Listeria monocytogenes
M7]
gi|346981911|emb|CBW85892.1| Putative RNA polymerase sigma factor RpoD [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|378753149|gb|EHY63734.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J1-208]
gi|404242041|emb|CBY63441.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2376]
Length = 374
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 126 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 185
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 186 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 245
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 305
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 306 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 365
Query: 515 TKHLMQY 521
+K L +
Sbjct: 366 SKQLKDF 372
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 181/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + L+ L+E L+ PT +WA A ++ ++L + G +
Sbjct: 27 LLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEKGEV 86
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 87 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWW 146
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A+ L+ K++
Sbjct: 147 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATISELAQELDLTPKQV 206
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + ED +++ + +LE ++ L P+
Sbjct: 207 REYLEKARVPLSLDLRLGDNYDTELGEMLEDPNA-SPEDFVMQSSLSYELESLIADLTPQ 265
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+RQV+ RFGL DG+ TL +IGE + +SRER+RQIE A KL+ K
Sbjct: 266 QRQVITLRFGLNDGKAMTLVKIGEQLNISRERVRQIEREALNKLRKAK 313
>gi|29376087|ref|NP_815241.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis V583]
gi|227518714|ref|ZP_03948763.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0104]
gi|227553323|ref|ZP_03983372.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis HH22]
gi|229545861|ref|ZP_04434586.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1322]
gi|229550053|ref|ZP_04438778.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29200]
gi|255975889|ref|ZP_05426475.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T2]
gi|256619027|ref|ZP_05475873.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 4200]
gi|256762453|ref|ZP_05503033.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T3]
gi|256853088|ref|ZP_05558458.1| RNA polymerase sigma-43 factor [Enterococcus faecalis T8]
gi|256958944|ref|ZP_05563115.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DS5]
gi|256961963|ref|ZP_05566134.1| sigma 42 [Enterococcus faecalis Merz96]
gi|256965161|ref|ZP_05569332.1| sigma 42 [Enterococcus faecalis HIP11704]
gi|257078975|ref|ZP_05573336.1| sigma 42 [Enterococcus faecalis JH1]
gi|257082587|ref|ZP_05576948.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis E1Sol]
gi|257085220|ref|ZP_05579581.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis Fly1]
gi|257086781|ref|ZP_05581142.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis D6]
gi|257089848|ref|ZP_05584209.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis CH188]
gi|257416057|ref|ZP_05593051.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ARO1/DG]
gi|257419260|ref|ZP_05596254.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis T11]
gi|257422656|ref|ZP_05599646.1| RNA polymerase sigma-43 factor [Enterococcus faecalis X98]
gi|293383032|ref|ZP_06628950.1| RNA polymerase sigma-43 factor [Enterococcus faecalis R712]
gi|293389479|ref|ZP_06633936.1| RNA polymerase sigma-43 factor [Enterococcus faecalis S613]
gi|294779115|ref|ZP_06744526.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis PC1.1]
gi|300860473|ref|ZP_07106560.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TUSoD Ef11]
gi|307271055|ref|ZP_07552338.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4248]
gi|307273262|ref|ZP_07554508.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0855]
gi|307274998|ref|ZP_07556161.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2134]
gi|307278111|ref|ZP_07559195.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0860]
gi|307289068|ref|ZP_07569024.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0109]
gi|307292033|ref|ZP_07571902.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0411]
gi|312900723|ref|ZP_07760020.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0470]
gi|312903270|ref|ZP_07762450.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0635]
gi|312907497|ref|ZP_07766488.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 512]
gi|312910115|ref|ZP_07768962.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 516]
gi|312951455|ref|ZP_07770352.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0102]
gi|384513206|ref|YP_005708299.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis OG1RF]
gi|421512418|ref|ZP_15959225.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29212]
gi|422689405|ref|ZP_16747517.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0630]
gi|422693062|ref|ZP_16751077.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0031]
gi|422694944|ref|ZP_16752932.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4244]
gi|422699260|ref|ZP_16757133.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1346]
gi|422701717|ref|ZP_16759557.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1342]
gi|422704436|ref|ZP_16762246.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1302]
gi|422706710|ref|ZP_16764408.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0043]
gi|422708433|ref|ZP_16765961.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0027]
gi|422714660|ref|ZP_16771386.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309A]
gi|422715918|ref|ZP_16772634.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309B]
gi|422718883|ref|ZP_16775534.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0017]
gi|422722558|ref|ZP_16779108.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2137]
gi|422727009|ref|ZP_16783452.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0312]
gi|422728944|ref|ZP_16785350.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0012]
gi|422733618|ref|ZP_16789920.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0645]
gi|422734351|ref|ZP_16790645.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1341]
gi|422739714|ref|ZP_16794887.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2141]
gi|422869407|ref|ZP_16915927.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1467]
gi|424673258|ref|ZP_18110201.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis 599]
gi|424676801|ref|ZP_18113672.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV103]
gi|424681381|ref|ZP_18118168.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV116]
gi|424683570|ref|ZP_18120320.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV129]
gi|424686525|ref|ZP_18123193.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV25]
gi|424690202|ref|ZP_18126737.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV31]
gi|424695296|ref|ZP_18131679.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV37]
gi|424696965|ref|ZP_18133306.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV41]
gi|424699649|ref|ZP_18135860.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV62]
gi|424703338|ref|ZP_18139472.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV63]
gi|424706029|ref|ZP_18142042.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV65]
gi|424717174|ref|ZP_18146472.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV68]
gi|424720753|ref|ZP_18149854.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV72]
gi|424724303|ref|ZP_18153252.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV73]
gi|424733890|ref|ZP_18162445.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV81]
gi|424743807|ref|ZP_18172112.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV85]
gi|424749506|ref|ZP_18177609.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV93]
gi|424761355|ref|ZP_18188937.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis R508]
gi|428766960|ref|YP_007153071.1| RNA polymerase sigma factor [Enterococcus faecalis str. Symbioflor
1]
gi|430360376|ref|ZP_19426223.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis OG1X]
gi|430368205|ref|ZP_19428077.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis M7]
gi|30179886|sp|P52329.2|RPOD_ENTFA RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-42
gi|29343549|gb|AAO81311.1| RNA polymerase sigma-43 factor [Enterococcus faecalis V583]
gi|227073834|gb|EEI11797.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0104]
gi|227177552|gb|EEI58524.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis HH22]
gi|229304757|gb|EEN70753.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29200]
gi|229309016|gb|EEN75003.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1322]
gi|255968761|gb|EET99383.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T2]
gi|256598554|gb|EEU17730.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 4200]
gi|256683704|gb|EEU23399.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T3]
gi|256711547|gb|EEU26585.1| RNA polymerase sigma-43 factor [Enterococcus faecalis T8]
gi|256949440|gb|EEU66072.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DS5]
gi|256952459|gb|EEU69091.1| sigma 42 [Enterococcus faecalis Merz96]
gi|256955657|gb|EEU72289.1| sigma 42 [Enterococcus faecalis HIP11704]
gi|256987005|gb|EEU74307.1| sigma 42 [Enterococcus faecalis JH1]
gi|256990617|gb|EEU77919.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis E1Sol]
gi|256993250|gb|EEU80552.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis Fly1]
gi|256994811|gb|EEU82113.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis D6]
gi|256998660|gb|EEU85180.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis CH188]
gi|257157885|gb|EEU87845.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ARO1/DG]
gi|257161088|gb|EEU91048.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis T11]
gi|257164480|gb|EEU94440.1| RNA polymerase sigma-43 factor [Enterococcus faecalis X98]
gi|291079697|gb|EFE17061.1| RNA polymerase sigma-43 factor [Enterococcus faecalis R712]
gi|291081096|gb|EFE18059.1| RNA polymerase sigma-43 factor [Enterococcus faecalis S613]
gi|294453840|gb|EFG22231.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis PC1.1]
gi|295112959|emb|CBL31596.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Enterococcus sp. 7L76]
gi|300849512|gb|EFK77262.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TUSoD Ef11]
gi|306497031|gb|EFM66579.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0411]
gi|306499777|gb|EFM69138.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0109]
gi|306505508|gb|EFM74694.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0860]
gi|306508446|gb|EFM77553.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2134]
gi|306510247|gb|EFM79271.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0855]
gi|306512553|gb|EFM81202.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4248]
gi|310626525|gb|EFQ09808.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 512]
gi|310630611|gb|EFQ13894.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0102]
gi|310633146|gb|EFQ16429.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0635]
gi|311289388|gb|EFQ67944.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 516]
gi|311292204|gb|EFQ70760.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0470]
gi|315027303|gb|EFT39235.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2137]
gi|315033932|gb|EFT45864.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0017]
gi|315036941|gb|EFT48873.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0027]
gi|315144454|gb|EFT88470.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2141]
gi|315147227|gb|EFT91243.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4244]
gi|315150574|gb|EFT94590.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0012]
gi|315152521|gb|EFT96537.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0031]
gi|315155799|gb|EFT99815.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0043]
gi|315158034|gb|EFU02051.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0312]
gi|315160483|gb|EFU04500.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0645]
gi|315163977|gb|EFU07994.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1302]
gi|315169073|gb|EFU13090.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1341]
gi|315169690|gb|EFU13707.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1342]
gi|315172348|gb|EFU16365.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1346]
gi|315575904|gb|EFU88095.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309B]
gi|315577570|gb|EFU89761.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0630]
gi|315580556|gb|EFU92747.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309A]
gi|327535095|gb|AEA93929.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis OG1RF]
gi|329571347|gb|EGG53034.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1467]
gi|401674531|gb|EJS80882.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29212]
gi|402351088|gb|EJU85980.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV116]
gi|402353068|gb|EJU87904.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis 599]
gi|402356421|gb|EJU91155.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV103]
gi|402364568|gb|EJU99003.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV129]
gi|402364889|gb|EJU99320.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV31]
gi|402367379|gb|EJV01720.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV25]
gi|402368473|gb|EJV02786.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV37]
gi|402375578|gb|EJV09558.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV62]
gi|402377294|gb|EJV11205.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV41]
gi|402385343|gb|EJV18883.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV63]
gi|402386522|gb|EJV20028.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV68]
gi|402388672|gb|EJV22100.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV65]
gi|402390900|gb|EJV24220.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV81]
gi|402393224|gb|EJV26454.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV72]
gi|402395444|gb|EJV28550.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV73]
gi|402399936|gb|EJV32790.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV85]
gi|402402339|gb|EJV35060.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis R508]
gi|402407757|gb|EJV40262.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV93]
gi|427185133|emb|CCO72357.1| RNA polymerase sigma factor [Enterococcus faecalis str. Symbioflor
1]
gi|429512852|gb|ELA02447.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis OG1X]
gi|429516367|gb|ELA05859.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis M7]
Length = 368
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 188/342 (54%), Gaps = 52/342 (15%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
+ AEKA A +S +G V +DP+R +LLTA EE++L+ I
Sbjct: 77 KEAEKAQAEDLSAPTG------------VKINDPVRMYLKEIGRVQLLTAAEEVELALKI 124
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
+ EG +E K ++ +N+RLV+
Sbjct: 125 E-----EGDQE-----------------------------------AKQRLAEANLRLVV 144
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+R
Sbjct: 145 SIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQAR 204
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIR+P HMVE ++ ++QL + GR P EE+ L +++ +L + P SL+
Sbjct: 205 TIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLE 264
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
IG + + I D +A + + + +KE LE VLDTL RE V+R RFGL+DG
Sbjct: 265 TPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDG 324
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 325 RTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|423100538|ref|ZP_17088245.1| RNA polymerase sigma factor RpoD [Listeria innocua ATCC 33091]
gi|370792762|gb|EHN60605.1| RNA polymerase sigma factor RpoD [Listeria innocua ATCC 33091]
Length = 382
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 134 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 193
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 194 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 253
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 254 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 313
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 314 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 373
Query: 515 TKHLMQY 521
+K L +
Sbjct: 374 SKQLKDF 380
>gi|345022115|ref|ZP_08785728.1| RNA polymerase sigma factor RpoD [Ornithinibacillus scapharcae
TW25]
Length = 373
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ E L+ ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLTPDKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|315303191|ref|ZP_07873849.1| RNA polymerase sigma factor RpoD [Listeria ivanovii FSL F6-596]
gi|313628434|gb|EFR96909.1| RNA polymerase sigma factor RpoD [Listeria ivanovii FSL F6-596]
Length = 386
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 138 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 197
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 198 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 257
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 258 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 317
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 318 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 377
Query: 515 TKHLMQY 521
+K L +
Sbjct: 378 SKQLKDF 384
>gi|183982017|ref|YP_001850308.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
gi|183175343|gb|ACC40453.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
Length = 333
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 166/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 KRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 142
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 143 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 202
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 203 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 262
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 263 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHG 322
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 323 ERADRLRSYA 332
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 179/317 (56%), Gaps = 21/317 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAA 269
DP+R LLTA EE+ L+ I+ G + T + A
Sbjct: 90 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDE 134
Query: 270 GV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+
Sbjct: 135 GIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 194
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL +
Sbjct: 195 RAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQD 254
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAED 444
R P EE+ E GLS +R+ + + P SL+ IG ++ + + I D A D
Sbjct: 255 LNRDPTPEEIGEKMGLSAERVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDSAVVPPD 314
Query: 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504
++E L KVLD L RER+V+ RFGLEDG TL+E+G GV+RERIRQIES
Sbjct: 315 AASFSMLQEQLSKVLDGLAERERKVISLRFGLEDGHPHTLEEVGREFGVTRERIRQIESK 374
Query: 505 AFRKLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 375 TLAKLRHPSRSSKLKDY 391
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
Length = 397
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 185/313 (59%), Gaps = 13/313 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA +E++LS I+ L E L E G T A+
Sbjct: 98 ADLVRVYLNGIGKTALLTAADEVELSQRIEAGLYAEHLLE-----TGEKLTRAR------ 146
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 147 --KRDLKILAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 204
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR
Sbjct: 205 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREAT 264
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
NEE+AE +G+ ++ +L + P SLD +G ++ + I D ++ AE ++
Sbjct: 265 NEELAEESGIDESKIETLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDSTDAEAAVVASL 324
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
D+ VLDTL RE+ V++ R+GL+DG +TL +IG G+SRER+RQIE KL+
Sbjct: 325 RHSDVRAVLDTLEEREQDVIKLRYGLDDGMPRTLDQIGRSFGLSRERVRQIEREVMAKLR 384
Query: 511 NKKRTKHLMQYAI 523
+R + L +YA+
Sbjct: 385 EGERAEKLREYAV 397
>gi|121534199|ref|ZP_01666024.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
gi|121307302|gb|EAX48219.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
Length = 368
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 131 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A +S++R+
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIAREMDISVERV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE LE+VL+TL PR
Sbjct: 251 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLKDF 366
>gi|387929762|ref|ZP_10132439.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus PB1]
gi|387586580|gb|EIJ78904.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus PB1]
Length = 375
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 126 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 185
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 186 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE 245
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 IAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKE 305
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 365
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 366 RSKRLKDF 373
>gi|293376344|ref|ZP_06622581.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325843397|ref|ZP_08167955.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645033|gb|EFF63106.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489319|gb|EGC91693.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 456
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 198/332 (59%), Gaps = 24/332 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ------DLLKL----EGLREVLSERCGGSP 260
+DP+R LL++ EE+ + I+ ++L++ E L E L ER
Sbjct: 125 NDPVRMYLKEIGRVELLSSQEEINFAKKIERGDISSEILEIRRKNEPLPEELLERID--- 181
Query: 261 TFAQWAAAA--------GVDQ---RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
Q A A GV + E RR + G K +++ +N+RLV+SIAK + G G
Sbjct: 182 LLIQDAGEANDGNEFLIGVTELSDEEARRVIQEGEYAKKRLVEANLRLVVSIAKRHVGRG 241
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE
Sbjct: 242 MLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 301
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ ++QL E GR P EE++E G++ +++ +L + P SL+ +G +
Sbjct: 302 TINKLVRIQRQLVQELGREPLPEEISEKMGIAPEKVREILKISQEPVSLESPVGEEDDSH 361
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I D +A + + + +K++L+ VL+TL RE +V+R RFGLEDGR +TL+E+G+
Sbjct: 362 LGDFIPDADALSPSEFASNEMLKKELDDVLETLTDREERVLRLRFGLEDGRTRTLEEVGK 421
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GV+RERIRQIE+ A RKL++ R++ L +
Sbjct: 422 EFGVTRERIRQIEAKALRKLRHPSRSRRLKDF 453
>gi|422409684|ref|ZP_16486645.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
F2-208]
gi|313608766|gb|EFR84582.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
F2-208]
Length = 374
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 126 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 185
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 186 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 245
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 305
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 306 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 365
Query: 515 TKHLMQY 521
+K L +
Sbjct: 366 SKQLKDF 372
>gi|289434736|ref|YP_003464608.1| RNA polymerase sigma factor RpoD [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|422419057|ref|ZP_16496012.1| RNA polymerase sigma factor RpoD [Listeria seeligeri FSL N1-067]
gi|289170980|emb|CBH27522.1| RNA polymerase sigma factor RpoD [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|313633237|gb|EFS00106.1| RNA polymerase sigma factor RpoD [Listeria seeligeri FSL N1-067]
Length = 374
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 126 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 185
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 186 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 245
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 246 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 305
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 306 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 365
Query: 515 TKHLMQY 521
+K L +
Sbjct: 366 SKQLKDF 372
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 191/300 (63%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR EVA+A + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D E + + + ++ M++DL+ +L L P+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLED-EGVSPDAYITQESMRQDLQNLLAELTPQ 287
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
++ V+ RFGL DG+ +L +IG+ + +SRER+RQ+E+ A +L K+R ++ +Y I S
Sbjct: 288 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQL--KRRRANMAEYIIAS 345
>gi|441521275|ref|ZP_21002936.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
gi|441459107|dbj|GAC60897.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
Length = 332
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 201/351 (57%), Gaps = 35/351 (9%)
Query: 186 AANVMSVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGI 239
A + ++ S + S R RP++ E D +D +R + LLTA +E+ LS I
Sbjct: 2 AHSTIARPSEARSTRTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLTAEQEVDLSKAI 61
Query: 240 QDLLKLEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMI 291
+ GL + +L+ + SP ++ +Y IL ++ ++
Sbjct: 62 E-----AGLYAKHLLATKKRLSPA----------------KKRDYAILVREGEQARAHLL 100
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 101 EANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIS 160
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
+ ++DQSRTIRLP H+VE ++ R++L+ + GR +EE+A +G+ +++ ++
Sbjct: 161 RGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPAEKIADLMDH 220
Query: 412 PKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVR 471
+ P SLD +G ++ + I D EA +AE ++I + D+ VL TL+ RE QV+
Sbjct: 221 SRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETVVIANLLHSDIRSVLSTLDEREMQVIT 280
Query: 472 WRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
R+GLEDG+ +TL +IG G+SRER+RQIE KL+ R + L YA
Sbjct: 281 MRYGLEDGQPRTLDQIGRAFGLSRERVRQIEREVMTKLRQGDRAEKLRAYA 331
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 183/297 (61%), Gaps = 13/297 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E+ L+ I+ L E L ++ G +P +REL+ + G
Sbjct: 64 LLTAEDEVTLAKSIEAGLYAEHL---INTSEGLTPQ----------RRRELKAVVRDGRA 110
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G G+ L DL+QEG GL+R EKFD SKGFKFSTYA WW
Sbjct: 111 ARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWW 170
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +EE++ TG+ R+
Sbjct: 171 IRQAITRGVADQSRTIRLPVHLVEQVNKLSRIKRELHQQLGREATSEELSRETGIPEHRI 230
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SLD +G ++ + I D E +AE+ +I F+ D+ VL TL+
Sbjct: 231 ADLLDHSRDPVSLDMPVGADEEAPLGDFIEDSEGASAENAVIAGFLHRDVRSVLATLSDS 290
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
E+QV+R R+GL+DG+ +TL +IG++ +SRER+RQIE KL+N R + L YA
Sbjct: 291 EQQVIRLRYGLDDGQPRTLDQIGKIFSLSRERVRQIEREVMVKLRNGDRAERLRSYA 347
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 181/321 (56%), Gaps = 29/321 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA+EE M++ AG++ KLE A
Sbjct: 150 GDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGLEATEKLE-------------------A 190
Query: 267 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
A AG + R L R N G+ K +I++N+RLV+SIAK Y G GM DL+QEG
Sbjct: 191 ADAGELELTRAEIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGN 250
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q
Sbjct: 251 LGLIRAVEKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQ 310
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAE 440
L + GR P EE+ +S R+ + + P SL+ IG ++ + + I D +A
Sbjct: 311 LLQDLGRDPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSQAI 370
Query: 441 TAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 500
D ++E L +VLD+L RER+V+ RFGL DG +TL+E+G GV+RERIRQ
Sbjct: 371 VPPDAASFSMLQEQLTQVLDSLADRERKVIELRFGLVDGHPRTLEEVGREFGVTRERIRQ 430
Query: 501 IESSAFRKLKNKKRTKHLMQY 521
IES KL++ R+ L Y
Sbjct: 431 IESKTLAKLRHPSRSSKLKDY 451
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 185/296 (62%), Gaps = 6/296 (2%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ I L LE R S W +A + ++ + G
Sbjct: 54 LLKPAEEIELARRIATWLSLEEKRSKFQAVAAES-----WLESANLTPQQWSTIVREGER 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+S+AK YQG G++L DL+QEG GL+R AEKFD ++GFKFSTYA WW
Sbjct: 109 AKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKFDYTRGFKFSTYATWW 168
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ Q+RTIRLP H+VE R+K+A +QL + GR P+ +E+A+A + +L
Sbjct: 169 IRQGITRAIAMQARTIRLPVHIVEKVNRIKKATRQLSQQLGRSPSEDEIAQAVEMDADQL 228
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
V + + P SL+ +G ++ ++I + E +++ M +DLE +L TL PR
Sbjct: 229 RFVRKAIQLPVSLETPVGREEDTALGDLI-QAKGNEPEHGVVRDLMNQDLESLLQTLTPR 287
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER V+R R+GL DGR +TL E+G+ G++RERIRQIE+ A RKL++ +R + + +Y
Sbjct: 288 ERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEARALRKLRHPQRLQRVREY 343
>gi|384518554|ref|YP_005705859.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
62]
gi|397699845|ref|YP_006537633.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
D32]
gi|323480687|gb|ADX80126.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
62]
gi|397336484|gb|AFO44156.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
D32]
Length = 356
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 188/342 (54%), Gaps = 52/342 (15%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
+ AEKA A +S +G V +DP+R +LLTA EE++L+ I
Sbjct: 65 KEAEKAQAEDLSAPTG------------VKINDPVRMYLKEIGRVQLLTAAEEVELALKI 112
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
+ EG +E K ++ +N+RLV+
Sbjct: 113 E-----EGDQE-----------------------------------AKQRLAEANLRLVV 132
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+R
Sbjct: 133 SIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQAR 192
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIR+P HMVE ++ ++QL + GR P EE+ L +++ +L + P SL+
Sbjct: 193 TIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLE 252
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
IG + + I D +A + + + +KE LE VLDTL RE V+R RFGL+DG
Sbjct: 253 TPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDG 312
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 313 RTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 354
>gi|116494985|ref|YP_806719.1| RNA polymerase sigma factor RpoD [Lactobacillus casei ATCC 334]
gi|191638497|ref|YP_001987663.1| RNA polymerase sigma factor RpoD [Lactobacillus casei BL23]
gi|227535009|ref|ZP_03965058.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|301066553|ref|YP_003788576.1| DNA-directed RNA polymerase sigma70/sigma32 subunit [Lactobacillus
casei str. Zhang]
gi|385820205|ref|YP_005856592.1| RNA polymerase sigma-70 subunit RpoD [Lactobacillus casei LC2W]
gi|385823402|ref|YP_005859744.1| RNA polymerase sigma-70 subunit RpoD [Lactobacillus casei BD-II]
gi|417980791|ref|ZP_12621470.1| RNA polymerase sigma factor [Lactobacillus casei 12A]
gi|417993010|ref|ZP_12633361.1| RNA polymerase sigma factor [Lactobacillus casei CRF28]
gi|417996364|ref|ZP_12636645.1| RNA polymerase sigma factor [Lactobacillus casei M36]
gi|417999242|ref|ZP_12639453.1| RNA polymerase sigma factor [Lactobacillus casei T71499]
gi|418002184|ref|ZP_12642307.1| RNA polymerase sigma factor [Lactobacillus casei UCD174]
gi|418008091|ref|ZP_12647961.1| RNA polymerase sigma factor [Lactobacillus casei UW4]
gi|418015186|ref|ZP_12654763.1| RNA polymerase sigma factor [Lactobacillus casei Lpc-37]
gi|116105135|gb|ABJ70277.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus casei ATCC
334]
gi|190712799|emb|CAQ66805.1| RNA polymerase sigma factor [Lactobacillus casei BL23]
gi|227187324|gb|EEI67391.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|300438960|gb|ADK18726.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Lactobacillus casei str. Zhang]
gi|327382532|gb|AEA54008.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus casei LC2W]
gi|327385729|gb|AEA57203.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus casei BD-II]
gi|410524302|gb|EKP99214.1| RNA polymerase sigma factor [Lactobacillus casei 12A]
gi|410532419|gb|EKQ07127.1| RNA polymerase sigma factor [Lactobacillus casei CRF28]
gi|410535675|gb|EKQ10292.1| RNA polymerase sigma factor [Lactobacillus casei M36]
gi|410539518|gb|EKQ14046.1| RNA polymerase sigma factor [Lactobacillus casei T71499]
gi|410544727|gb|EKQ19046.1| RNA polymerase sigma factor [Lactobacillus casei UCD174]
gi|410547571|gb|EKQ21802.1| RNA polymerase sigma factor [Lactobacillus casei UW4]
gi|410552010|gb|EKQ26049.1| RNA polymerase sigma factor [Lactobacillus casei Lpc-37]
Length = 422
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 185 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 244
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 245 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 304
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 305 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 364
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 365 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 420
>gi|163119552|ref|YP_079858.2| RNA polymerase sigma factor RpoD [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319644974|ref|ZP_07999207.1| RNA polymerase sigma factor rpoD [Bacillus sp. BT1B_CT2]
gi|404489950|ref|YP_006714056.1| RNA polymerase sigma factor RpoD [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423683045|ref|ZP_17657884.1| RNA polymerase sigma factor RpoD [Bacillus licheniformis WX-02]
gi|52348949|gb|AAU41583.1| RNA polymerase sigma factor SigA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|145903060|gb|AAU24220.2| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317392783|gb|EFV73577.1| RNA polymerase sigma factor rpoD [Bacillus sp. BT1B_CT2]
gi|383439819|gb|EID47594.1| RNA polymerase sigma factor RpoD [Bacillus licheniformis WX-02]
Length = 373
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 136 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|428280009|ref|YP_005561744.1| RNA polymerase sigma factor [Bacillus subtilis subsp. natto
BEST195]
gi|291484966|dbj|BAI86041.1| RNA polymerase sigma factor [Bacillus subtilis subsp. natto
BEST195]
Length = 371
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 134 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 254 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 314 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 369
>gi|398306978|ref|ZP_10510564.1| RNA polymerase sigma factor RpoD [Bacillus vallismortis DV1-F-3]
Length = 371
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 134 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 254 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 314 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 369
>gi|239827752|ref|YP_002950376.1| RNA polymerase sigma factor RpoD [Geobacillus sp. WCH70]
gi|239808045|gb|ACS25110.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
WCH70]
Length = 374
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 125 ELAKRIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 184
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 185 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE 244
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D EA + + + +KE
Sbjct: 245 IAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKE 304
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 305 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 364
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 365 RSKRLKDF 372
>gi|417989747|ref|ZP_12630248.1| RNA polymerase sigma factor [Lactobacillus casei A2-362]
gi|410537492|gb|EKQ12066.1| RNA polymerase sigma factor [Lactobacillus casei A2-362]
Length = 422
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 185 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 244
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 245 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 304
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 305 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 364
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 365 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 420
>gi|221310444|ref|ZP_03592291.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. 168]
gi|221314767|ref|ZP_03596572.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221319690|ref|ZP_03600984.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323967|ref|ZP_03605261.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. SMY]
gi|255767573|ref|NP_390399.2| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. 168]
gi|296333322|ref|ZP_06875775.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675173|ref|YP_003866845.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
subsp. spizizenii str. W23]
gi|321312003|ref|YP_004204290.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BSn5]
gi|350266721|ref|YP_004878028.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|384176143|ref|YP_005557528.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386759117|ref|YP_006232333.1| RNA polymerase sigma factor RpoD [Bacillus sp. JS]
gi|398311463|ref|ZP_10514937.1| RNA polymerase sigma factor RpoD [Bacillus mojavensis RO-H-1]
gi|418032304|ref|ZP_12670787.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|430758721|ref|YP_007208938.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|443631815|ref|ZP_21115995.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449095014|ref|YP_007427505.1| RNA polymerase sigma factor [Bacillus subtilis XF-1]
gi|452915616|ref|ZP_21964242.1| RNA polymerase sigma factor rpoD [Bacillus subtilis MB73/2]
gi|251757327|sp|P06224.2|RPOD_BACSU RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43; AltName: Full=Sigma-A
gi|225185201|emb|CAB14450.2| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
subsp. subtilis str. 168]
gi|296149520|gb|EFG90416.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413417|gb|ADM38536.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
subsp. spizizenii str. W23]
gi|320018277|gb|ADV93263.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BSn5]
gi|349595367|gb|AEP91554.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349599608|gb|AEP87396.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|351471167|gb|EHA31288.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|384932399|gb|AFI29077.1| RNA polymerase sigma factor RpoD [Bacillus sp. JS]
gi|407959766|dbj|BAM53006.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BEST7613]
gi|407965341|dbj|BAM58580.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BEST7003]
gi|430023241|gb|AGA23847.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|443347930|gb|ELS61987.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449028929|gb|AGE64168.1| RNA polymerase sigma factor [Bacillus subtilis XF-1]
gi|452115964|gb|EME06360.1| RNA polymerase sigma factor rpoD [Bacillus subtilis MB73/2]
Length = 371
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 134 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 254 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 314 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 369
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 202/349 (57%), Gaps = 19/349 (5%)
Query: 178 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 139 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 198
Query: 238 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 292
I+ L E LR +++ G + AQ +R LN+ G K+ ++
Sbjct: 199 RIEAGLFATERLRRMMA--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 244
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 245 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITR 304
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 305 AMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYA 364
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE VVR
Sbjct: 365 REPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRL 424
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 425 RFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 473
>gi|406956443|gb|EKD84538.1| hypothetical protein ACD_38C00204G0004 [uncultured bacterium]
Length = 363
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 165/240 (68%), Gaps = 9/240 (3%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+DK+I++N+RLV+SIAK Y G GM+L DL++EG GL+R +K+D +G+KFSTYA WW
Sbjct: 127 ARDKLISANLRLVVSIAKKYVGRGMSLLDLIEEGNIGLMRAVDKYDWRRGYKFSTYATWW 186
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE R +++L E GR P EEVA+A G+ +
Sbjct: 187 IRQAITRAIADQARTIRIPVHMVETINRFNRTQRKLMQELGREPTPEEVAKALGIDETKA 246
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIAD----PEAETAEDLLIKKFMKEDLEKVLDT 461
++ + P SL+ +G ++ + IAD P+ + +LL K L++VLD+
Sbjct: 247 REIIKVSQEPTSLETPVGDEEDSHLGDFIADQGLQPDEQATRELL-----KIHLDEVLDS 301
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
L+PRE++V++ RFGLEDG+ +TL+E+G+ GV+RERIRQIE+ A RKLK+ R K L Y
Sbjct: 302 LSPREKRVLQLRFGLEDGKQRTLEEVGKEFGVTRERIRQIEAKAIRKLKHPTRAKKLRDY 361
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 181/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q + L L+ + E G P+ +WA AA +D L ++L+ G
Sbjct: 32 LLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +MI +N+RLV++IAK YQ + DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 92 AKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L GR E+AEA L + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQTLGRSATVGEIAEALELEVTQV 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD +IG NQ+ + E++ D A + ED +++ +K+D++ +L L P+
Sbjct: 212 REYLTMARQPISLDVRIGDNQDTELQELLEDDTA-SPEDFTVRESLKQDIQTLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+++V+ R+GL DG +L ++G + +SRER+RQ+E A + L+ +K
Sbjct: 271 QQEVITLRYGLNDGNELSLAKVGNRLNISRERVRQLEQQALKHLRRRK 318
>gi|452975086|gb|EME74905.1| RNA polymerase sigma factor RpoD [Bacillus sonorensis L12]
Length = 373
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 136 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 204/353 (57%), Gaps = 19/353 (5%)
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
+++ +T AA K+ V + R+ R + +D +R LL A EE+
Sbjct: 175 KESSKTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV 234
Query: 234 QLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKD 288
+L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 235 ELAKRIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKN 280
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+Q
Sbjct: 281 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 340
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 341 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI 400
Query: 409 LLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 468
+ P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE
Sbjct: 401 QQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAG 460
Query: 469 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 461 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 513
>gi|374602363|ref|ZP_09675356.1| RpoD subfamily RNA polymerase sigma-70 factor [Paenibacillus
dendritiformis C454]
gi|374391965|gb|EHQ63294.1| RpoD subfamily RNA polymerase sigma-70 factor [Paenibacillus
dendritiformis C454]
Length = 374
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 125 ELAKRIEQGDSEAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHS 184
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 185 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEE 244
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A LS++++ ++ + P SL+ IG + + I D EA D + +KE
Sbjct: 245 IAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKE 304
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 305 QLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 364
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 365 RSKRLKDF 372
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 193/305 (63%), Gaps = 12/305 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 278
LL +EE+ L+ +QD +KL +R L + G PT A+WAA A + +L++
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQ 117
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD KG++F
Sbjct: 118 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 177
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++L E GR P E++A
Sbjct: 178 STYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASEL 237
Query: 399 GLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
+++ ++ +L+ + PR SL+ K+G +++ + +++ + + E+ ++++ + DL+
Sbjct: 238 EMTVPQVRELLV--RVPRSVSLETKVGKDKDTELGDLLETDDI-SPEETMMREALHRDLQ 294
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
++L L RER V+R RFGL DGR +L EIG + +SRER+RQIE+ A +KL+ KR
Sbjct: 295 QLLADLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRN 354
Query: 517 HLMQY 521
+ Y
Sbjct: 355 RVRDY 359
>gi|15609847|ref|NP_217226.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
gi|15842248|ref|NP_337285.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CDC1551]
gi|31793882|ref|NP_856375.1| RNA polymerase sigma factor SigB [Mycobacterium bovis AF2122/97]
gi|121638585|ref|YP_978809.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662551|ref|YP_001284074.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|224991077|ref|YP_002645766.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Tokyo 172]
gi|254365367|ref|ZP_04981412.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|289444252|ref|ZP_06433996.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289448365|ref|ZP_06438109.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289570886|ref|ZP_06451113.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289575408|ref|ZP_06455635.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289751363|ref|ZP_06510741.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289754812|ref|ZP_06514190.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289758838|ref|ZP_06518216.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|289762881|ref|ZP_06522259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|298526180|ref|ZP_07013589.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|307085405|ref|ZP_07494518.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|313659647|ref|ZP_07816527.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
V2475]
gi|339632722|ref|YP_004724364.1| RNA polymerase sigma factor SigB [Mycobacterium africanum GM041182]
gi|340627711|ref|YP_004746163.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|378772440|ref|YP_005172173.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|385999490|ref|YP_005917789.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|386005585|ref|YP_005923864.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|392387342|ref|YP_005308971.1| sigB [Mycobacterium tuberculosis UT205]
gi|397674619|ref|YP_006516154.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|424805050|ref|ZP_18230481.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|433627826|ref|YP_007261455.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|433631811|ref|YP_007265439.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|433635772|ref|YP_007269399.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|433642896|ref|YP_007288655.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|1171103|gb|AAA86044.1| sigma factor MysB [Mycobacterium tuberculosis H37Rv]
gi|13882539|gb|AAK47099.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis CDC1551]
gi|31619476|emb|CAD94914.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium bovis AF2122/97]
gi|121494233|emb|CAL72711.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|134150880|gb|EBA42925.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|148506703|gb|ABQ74512.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|224774192|dbj|BAH26998.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|289417171|gb|EFD14411.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289421323|gb|EFD18524.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289539839|gb|EFD44417.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289544640|gb|EFD48288.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289691950|gb|EFD59379.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289695399|gb|EFD62828.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289710387|gb|EFD74403.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|289714402|gb|EFD78414.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|298495974|gb|EFI31268.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|308365051|gb|EFP53902.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|326904326|gb|EGE51259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|339332078|emb|CCC27784.1| RNA polymerase sigma factor SIGB [Mycobacterium africanum GM041182]
gi|340005901|emb|CCC45067.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|341602623|emb|CCC65299.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220537|gb|AEN01168.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|356594761|gb|AET19990.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|378545893|emb|CCE38171.1| sigB [Mycobacterium tuberculosis UT205]
gi|380726073|gb|AFE13868.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|395139524|gb|AFN50683.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|432155432|emb|CCK52682.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|432159444|emb|CCK56748.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|432163404|emb|CCK60812.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|432167365|emb|CCK64876.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|440582187|emb|CCG12590.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium tuberculosis
7199-99]
gi|444896247|emb|CCP45508.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
Length = 323
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ + +++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 312
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 313 ERADRLRSYA 322
>gi|255026189|ref|ZP_05298175.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J2-003]
Length = 361
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 113 LAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNK 172
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P+ EE+
Sbjct: 173 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEI 232
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
E L +++ +L + P SL+ IG + + I D +A + D + +KE
Sbjct: 233 GEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQ 292
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R
Sbjct: 293 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSR 352
Query: 515 TKHLMQY 521
+K L +
Sbjct: 353 SKQLKDF 359
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 179/317 (56%), Gaps = 21/317 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAA 269
DP+R LLTA EE+ L+ I+ G + T + A
Sbjct: 79 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDE 123
Query: 270 GV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+
Sbjct: 124 GIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 183
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL +
Sbjct: 184 RAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQD 243
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAED 444
R P EE+ E GLS +R+ + + P SL+ IG ++ + + I D A D
Sbjct: 244 LNRDPTPEEIGEKMGLSAERVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDSAVVPPD 303
Query: 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504
++E L KVLD L RER+V+ RFGLEDG TL+E+G GV+RERIRQIES
Sbjct: 304 AASFSMLQEQLSKVLDGLAERERKVISLRFGLEDGHPHTLEEVGREFGVTRERIRQIESK 363
Query: 505 AFRKLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 364 TLAKLRHPSRSSKLKDY 380
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 180/296 (60%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL + R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLHHPSRSQVLRDY 526
>gi|196034883|ref|ZP_03102290.1| RNA polymerase sigma-43 factor [Bacillus cereus W]
gi|195992422|gb|EDX56383.1| RNA polymerase sigma-43 factor [Bacillus cereus W]
Length = 373
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|359419322|ref|ZP_09211280.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
gi|358244729|dbj|GAB09349.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
Length = 321
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 198/333 (59%), Gaps = 21/333 (6%)
Query: 196 STSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--R 249
+TS R P+ ++D P +R + LL A +E++L+ I+ GL +
Sbjct: 3 TTSVRPAPTESDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAK 57
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
VL+ R P V +R+L + + G + ++ +N+RLV+S+AK Y G G
Sbjct: 58 HVLATRKRIGP----------VRKRDLNQIVREGEQARAHLLEANLRLVVSLAKRYTGRG 107
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 108 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE 167
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++
Sbjct: 168 QVNKLARIKRELHQQLGREATDDELAAESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAP 227
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I D EA +AE+++I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG
Sbjct: 228 LGDFIEDTEATSAENVVIAGLLHSDIRSVLATLDDREQQVIRMRYGLDDGQPRTLDQIGR 287
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G+SRER+RQIE KL+ R + L YA
Sbjct: 288 AFGLSRERVRQIEREVMVKLRVGDRAERLRAYA 320
>gi|339624938|ref|ZP_08660727.1| RNA polymerase sigma factor RpoD [Fructobacillus fructosus KCTC
3544]
Length = 430
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 165/253 (65%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ E+ +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEIEISKRIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTGDKIREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++E LE VLDTL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+KHL +
Sbjct: 414 LRHPSRSKHLKDF 426
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 180/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +EE+ +Q ++ L ++ L++ P+ +WAA + ++E+ + + G
Sbjct: 32 LLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPEKEVTQIVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKFGRSPTPTEIAHELELEPMQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD K+G NQ+ + E++ D E + E ++F+++DL +L L P+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQDTELQEMLED-EGPSPEYYTTQEFLRQDLNNLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+RQV+ RFGLEDG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 271 QRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRR 318
>gi|297584635|ref|YP_003700415.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
selenitireducens MLS10]
gi|297143092|gb|ADH99849.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
selenitireducens MLS10]
Length = 371
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 197/362 (54%), Gaps = 59/362 (16%)
Query: 160 VSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRA 219
+++S AV S +Q E++ E N +SV G + +DP+R
Sbjct: 67 INESEAVPSLQQVEKE-------EAFDLNDLSVPPG------------IKINDPVRMYLK 107
Query: 220 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 279
LL+A EE++L+ I++ D E +RR
Sbjct: 108 EIGRVPLLSAKEEVELAKRIEE------------------------------DDEEAKRR 137
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
L +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFS
Sbjct: 138 LA----------EANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFS 187
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EEV++
Sbjct: 188 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEVSKEME 247
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVL 459
L+ ++ +L + P SL+ IG + + I D EA D + +KE LE VL
Sbjct: 248 LTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVL 307
Query: 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLM 519
DTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L
Sbjct: 308 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 367
Query: 520 QY 521
+
Sbjct: 368 DF 369
>gi|443490417|ref|YP_007368564.1| RNA polymerase sigma factor SigB [Mycobacterium liflandii 128FXT]
gi|442582914|gb|AGC62057.1| RNA polymerase sigma factor SigB [Mycobacterium liflandii 128FXT]
Length = 323
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 166/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 73 KRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREIHQNLGREATDE 192
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++++ +L + P SLD +G + + I D EA +AE+ +I + +
Sbjct: 193 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE QV+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++
Sbjct: 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHG 312
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 313 ERADRLRSYA 322
>gi|261367093|ref|ZP_05979976.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
gi|282571217|gb|EFB76752.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
Length = 364
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 127 AKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYATWW 186
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE +VK+ QL E G P+ EE+AE +S+ ++
Sbjct: 187 IRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSVDKV 246
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + + +KE L VL TL PR
Sbjct: 247 REIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQTLLKEQLADVLKTLTPR 306
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGLEDGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 307 EEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDF 362
>gi|390559809|ref|ZP_10244092.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
gi|390173609|emb|CCF83391.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
Length = 537
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 163/247 (65%), Gaps = 3/247 (1%)
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
E+RRR G + ++ +N+RLV+S+AK Y G GM++ DLVQEG GL+R EKF K
Sbjct: 292 EMRRR---GDFARMRLTEANLRLVVSVAKKYVGRGMSMLDLVQEGNLGLIRAVEKFQHHK 348
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L E GR P +EE+
Sbjct: 349 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLIRTSRRLQQERGREPTSEEI 408
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
A G++ ++ ++ + P SL+ IG ++ + I D +A D K +KE
Sbjct: 409 AAEMGMAPDKIREIMKISQEPVSLEMPIGEEEDSNLGDFIEDHKALAPSDAASHKMLKEQ 468
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+E VL +L+ RER+V+ RFGL+DGR +TL+E+G GV+RERIRQIE+ A RKL++ R
Sbjct: 469 VEDVLGSLSERERRVLELRFGLDDGRSRTLEEVGREFGVTRERIRQIEAKALRKLRHPSR 528
Query: 515 TKHLMQY 521
+K L Y
Sbjct: 529 SKKLRDY 535
>gi|300784474|ref|YP_003764765.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|399536359|ref|YP_006549021.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
gi|299793988|gb|ADJ44363.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|398317129|gb|AFO76076.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
Length = 343
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 158/240 (65%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA
Sbjct: 103 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 162
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR +EE+A +G+
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 222
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
++ +L + P SLD +G ++ + I D EA AE +I +++DL +VL TL
Sbjct: 223 HKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 282
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ RE+ V+R R+GL+DG+ +TL +IG+ G+SRER+RQIE KL+ +R L YA
Sbjct: 283 DDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGERADRLRAYA 342
>gi|239631415|ref|ZP_04674446.1| DNA-directed RNA polymerase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|409997357|ref|YP_006751758.1| RNA polymerase sigma factor rpoD [Lactobacillus casei W56]
gi|417983523|ref|ZP_12624159.1| RNA polymerase sigma factor [Lactobacillus casei 21/1]
gi|417986865|ref|ZP_12627430.1| RNA polymerase sigma factor [Lactobacillus casei 32G]
gi|418005214|ref|ZP_12645210.1| RNA polymerase sigma factor [Lactobacillus casei UW1]
gi|239525880|gb|EEQ64881.1| DNA-directed RNA polymerase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|406358369|emb|CCK22639.1| RNA polymerase sigma factor rpoD [Lactobacillus casei W56]
gi|410524599|gb|EKP99507.1| RNA polymerase sigma factor [Lactobacillus casei 32G]
gi|410527792|gb|EKQ02654.1| RNA polymerase sigma factor [Lactobacillus casei 21/1]
gi|410547467|gb|EKQ21700.1| RNA polymerase sigma factor [Lactobacillus casei UW1]
Length = 352
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 115 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 174
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 175 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 234
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 235 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDR 294
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 295 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 350
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 183/300 (61%), Gaps = 17/300 (5%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY--- 282
LL A EE++L+ I+ L E + ER G P +RR +N+
Sbjct: 195 LLNAEEEVELAKRIEAGLFAEQMINRWVER-GEKPAIG------------IRRDMNWIAR 241
Query: 283 -GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 242 DGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 301
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 302 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 361
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
+++ + + P SLDQ IG + + + I D EA A D + +++ L+ VLDT
Sbjct: 362 PEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDT 421
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
L+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 422 LSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 481
>gi|205374117|ref|ZP_03226917.1| RNA polymerase sigma factor RpoD [Bacillus coahuilensis m4-4]
Length = 337
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 100 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 159
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L +++
Sbjct: 160 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLPPEKV 219
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA++ + + +KE LE VLDTL R
Sbjct: 220 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHAAYELLKEQLEDVLDTLTDR 279
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 280 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 335
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 201/349 (57%), Gaps = 19/349 (5%)
Query: 178 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 134 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 193
Query: 238 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 292
I+ L E LR ++ G + AQ +R LN+ G K+ ++
Sbjct: 194 RIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 239
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 240 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITR 299
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 300 AMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYA 359
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE VVR
Sbjct: 360 REPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRL 419
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 420 RFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 468
>gi|260893571|ref|YP_003239668.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ammonifex degensii
KC4]
gi|260865712|gb|ACX52818.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ammonifex
degensii KC4]
Length = 369
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++I +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 120 ELAKRMEQGDEEAKRRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDWR 179
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 180 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLVQELGREPTPEE 239
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE G+S +++ ++ + P SL+ IG ++ + I D EA+ + ++E
Sbjct: 240 IAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYALLRE 299
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L +VL +L PRE++V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ RKL++
Sbjct: 300 QLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPS 359
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 360 RSKKLKDY 367
>gi|441518658|ref|ZP_21000373.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 322
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 192/333 (57%), Gaps = 17/333 (5%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
S +T R P+ Q++D P +R + LL A +E+ L+ I+ L L
Sbjct: 2 STATRTRPAPTAQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVDLAKAIEVGLYARHLL 61
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ ++R G + +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 62 DT-TKRMGPAR------------KRDLNILVREGEQARAHLLEANLRLVVSLAKRYTGRG 108
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 109 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAISRGMADQSRTIRLPVHLVE 168
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ R++L+ + GR +EE+A TG+ ++ ++ + SLD +G ++
Sbjct: 169 QVNKISRIRRELHQQLGREATDEELASETGIPAAKIADLMDHSRDTVSLDMPVGNDEEAP 228
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I D EA +AE ++I + D+ VL TL+ RERQV+ RFGLEDG+ +TL +IG
Sbjct: 229 LGDFIEDSEAVSAETVVISHLLHSDIRTVLATLDDRERQVITLRFGLEDGQPRTLDQIGR 288
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G+SRER+RQIE KL+ R + L YA
Sbjct: 289 SFGLSRERVRQIEREVMGKLREGDRAEKLRAYA 321
>gi|56421017|ref|YP_148335.1| RNA polymerase sigma factor RpoD [Geobacillus kaustophilus HTA426]
gi|261417657|ref|YP_003251339.1| RNA polymerase sigma factor RpoD [Geobacillus sp. Y412MC61]
gi|297529352|ref|YP_003670627.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
C56-T3]
gi|319767537|ref|YP_004133038.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
Y412MC52]
gi|375009568|ref|YP_004983201.1| RNA polymerase sigma factor rpoD [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448238761|ref|YP_007402819.1| RNA polymerase sigma factor [Geobacillus sp. GHH01]
gi|56380859|dbj|BAD76767.1| DNA-directed RNA polymerase major sigma-43 factor (sigma-A)
[Geobacillus kaustophilus HTA426]
gi|261374114|gb|ACX76857.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y412MC61]
gi|297252604|gb|ADI26050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
C56-T3]
gi|317112403|gb|ADU94895.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y412MC52]
gi|359288417|gb|AEV20101.1| RNA polymerase sigma factor rpoD [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207603|gb|AGE23068.1| RNA polymerase sigma factor [Geobacillus sp. GHH01]
Length = 375
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 126 ELAKRIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 185
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 186 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE 245
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D +A + + + +KE
Sbjct: 246 IAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKE 305
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 365
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 366 RSKRLKDF 373
>gi|384147741|ref|YP_005530557.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
gi|340525895|gb|AEK41100.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
Length = 317
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 158/240 (65%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA
Sbjct: 77 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR +EE+A +G+
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 196
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
++ +L + P SLD +G ++ + I D EA AE +I +++DL +VL TL
Sbjct: 197 HKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 256
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ RE+ V+R R+GL+DG+ +TL +IG+ G+SRER+RQIE KL+ +R L YA
Sbjct: 257 DDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGERADRLRAYA 316
>gi|375101508|ref|ZP_09747771.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662240|gb|EHR62118.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 343
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 189/318 (59%), Gaps = 25/318 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEGLREVLSERCGGSPTFAQ 264
+D +R + LLTA EE+ L+ AG+ Q +L G ++ +ER G
Sbjct: 44 ADLVRVYLNGIGKTALLTAEEEVDLAKRIEAGVFAQHVLDTSG--DLSAERRG------- 94
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+
Sbjct: 95 ----------ELAAIVRDGERAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 144
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+
Sbjct: 145 RAVEKFDYAKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQR 204
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAED 444
GR NEE+A +G++ ++ ++L + P SLD +G ++ + I D EA AE
Sbjct: 205 LGREATNEELAAESGIAETKVASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAES 264
Query: 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504
+I +++DL +VL TL+ RE+QV+R R+GL+DG+ +TL +IG+ +SRER+RQIE
Sbjct: 265 TVISTLLQDDLRRVLATLDDREQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIERE 324
Query: 505 AFRKLKNKKRTKHLMQYA 522
KL++ +R L YA
Sbjct: 325 VMAKLRHGERADRLRAYA 342
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 188/312 (60%), Gaps = 11/312 (3%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R YLR LL EE+ L+ +Q+ E+L +R G T WA
Sbjct: 19 SDPIRLYLREIGRVD-LLRQEEEILLARLVQER------EELLRQRGDGELT--AWAGRC 69
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
GV +LR+ L+ G K++M+ +N+RLV+++AK YQ G++L DL+QEG GL R E+
Sbjct: 70 GVPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVER 129
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
+D +GF+FSTYA+WWI+Q + ++L+ QSRTIRLP H+ E R++ + +L E+GR P
Sbjct: 130 YDPRRGFRFSTYAYWWIRQGITRALASQSRTIRLPVHVTETLNRIRTCQGELTREHGRQP 189
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
E+A A GL RL + L P SL+ ++G N + +++ D A T E L ++
Sbjct: 190 TLAELARAVGLDEARLRSTLAHIPRPVSLEGRVGANADTPLVDLLEDDHA-TPEQTLTRQ 248
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
+ DLE +LD L+ RE V+R RFGL+D +TL EIGE + +SRER+RQIES A KL
Sbjct: 249 QLHADLEALLDELSAREATVIRQRFGLDDDTPRTLAEIGEQLQLSRERVRQIESRALLKL 308
Query: 510 KNKKRTKHLMQY 521
+ + + Y
Sbjct: 309 RQPQNRCRVRDY 320
>gi|452948582|gb|EME54060.1| RNA polymerase sigma factor SigB [Amycolatopsis decaplanina DSM
44594]
Length = 317
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 156/237 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA WW
Sbjct: 80 AKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYATWW 139
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR +EE+A +G+ ++
Sbjct: 140 IRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPAHKI 199
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SLD +G ++ + I D EA AE +I +++DL +VL TL+ R
Sbjct: 200 SDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATLDDR 259
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
E QV+R R+GL+DG+ +TL +IG+ G+SRER+RQIE KL+ +R L YA
Sbjct: 260 ESQVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGERADRLRAYA 316
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 186/300 (62%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ G +WA +D EL + G
Sbjct: 32 LLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQKGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KGFKFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K +++L GR+P+ E+A L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSPSEIARELELQPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D ++ + + + ++ +++DL +LD L P+
Sbjct: 212 REYLSVARQPISLDVRVGDNQDTELSELLED-DSVSPDKYITQELLRQDLRMLLDELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
++QV+ RFGLEDG+ +L +IG+ + +SRER+RQ+E A L +KR ++ +Y I S
Sbjct: 271 QQQVISLRFGLEDGKEMSLAKIGKQLNLSRERVRQLEHQALAHL--RKRRDNIEEYIIAS 328
>gi|453073906|ref|ZP_21976704.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
gi|452765392|gb|EME23649.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
Length = 454
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 193/329 (58%), Gaps = 21/329 (6%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
R+ R + +D +R LL A EE++L+ I+ L L + +E+
Sbjct: 139 RQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMQEFTEKGEK 198
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNL 312
P AQ RR LN+ +C+D ++ +N+RLV+S+AK Y G GM
Sbjct: 199 LPV-AQ------------RRDLNW--ICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAF 243
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE
Sbjct: 244 LDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN 303
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSE 432
++ +++L + GR P EE+A+ ++ +++ + + P SLDQ IG + + +
Sbjct: 304 KLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGD 363
Query: 433 VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG 492
I D EA A D + +++ L+ VLDTL+ RE VVR RFGL DG+ +TL EIG++ G
Sbjct: 364 FIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYG 423
Query: 493 VSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V+RERIRQIES KL++ R++ L Y
Sbjct: 424 VTRERIRQIESKTMSKLRHPSRSQVLRDY 452
>gi|227431669|ref|ZP_03913702.1| DNA-directed RNA polymerase sigma subunit RpoD [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352572|gb|EEJ42765.1| DNA-directed RNA polymerase sigma subunit RpoD [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 432
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 165/253 (65%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ ++ +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GNEEIDIAKRIENGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEIDLTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++E LE VLDTL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 182/301 (60%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 162 LLNAEEEVDLAKRIEAGLYGSERLRQVEEEGQKISP--------------QMRRDLNWIV 207
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 208 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 267
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 268 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 327
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ ++ + + P SLDQ IG + + + I D EA A D + M++ L VL
Sbjct: 328 TPDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQ 387
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 388 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 447
Query: 521 Y 521
Y
Sbjct: 448 Y 448
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 218/362 (60%), Gaps = 11/362 (3%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 220
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 206 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 257
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 258 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 317
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
+G C+D+++ S LV+ IA+NY+G G+ +D++Q G G+++GAE+FD +KG++FST
Sbjct: 318 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 377
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
Y +WI++++ ++ +R +++PF + A ++++ARK LY +GR+P++ E+A+ TGL
Sbjct: 378 YVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGL 437
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
S+ ++ + + S DQ E D ++ E+ +++ ++D+ +L
Sbjct: 438 SLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLK 497
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
L+PRERQ++ R+G + + K+L+EIG VS+E IR++E +A L++++ ++L
Sbjct: 498 GLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRH 557
Query: 521 YA 522
Y
Sbjct: 558 YV 559
>gi|421873893|ref|ZP_16305502.1| RNA polymerase sigma factor rpoD [Brevibacillus laterosporus GI-9]
gi|372457004|emb|CCF15051.1| RNA polymerase sigma factor rpoD [Brevibacillus laterosporus GI-9]
Length = 374
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYQKGYKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE L+ +++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAEKMDLTPEKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D EA D + +KE LE VLDTL R
Sbjct: 257 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVLDTLTDR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L +++L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + +++ D T ED ++ ++ DL+ ++ L +
Sbjct: 204 REYLDRARLPLSLDLRVGDNQDTELGDLLEDT-GTTPEDFALQSSLRTDLDHLMAELTQQ 262
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+R+V+ RFGLEDG+ TL +IG+ + +SRER+RQIE A KL+ +K+
Sbjct: 263 QREVLALRFGLEDGQTLTLAKIGDRLNISRERVRQIEREALTKLRKRKQ 311
>gi|402776782|ref|YP_006630726.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
QB928]
gi|402481962|gb|AFQ58471.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
QB928]
Length = 400
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 163 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 222
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 282
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 283 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 342
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 343 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 398
>gi|262202171|ref|YP_003273379.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085518|gb|ACY21486.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length = 337
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 197/331 (59%), Gaps = 23/331 (6%)
Query: 200 RKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--REV 251
R RP++ E D +D +R + LL A +E++L+ I+ GL + V
Sbjct: 21 RTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAKHV 75
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+ T + +AA +R+L + G + ++ +N+RLV+S+AK Y G GM
Sbjct: 76 LA-------TKKRLSAAK---KRDLAIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 125
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 126 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 185
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
++ +++L+ + GR +EE+A +G+ +++ +L + P SLD +G ++
Sbjct: 186 NKLARIKRELHQQLGREATDEELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLG 245
Query: 432 EVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM 491
+ I D EA +AE +I M D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG +
Sbjct: 246 DFIEDAEATSAESAVIAGLMHTDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMF 305
Query: 492 GVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G+SRER+RQIE KL+ R + L YA
Sbjct: 306 GLSRERVRQIEREVMGKLRQGDRAERLRAYA 336
>gi|116618341|ref|YP_818712.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|381336740|ref|YP_005174515.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc mesenteroides subsp. mesenteroides J18]
gi|116097188|gb|ABJ62339.1| RNA polymerase, sigma 70 subunit, RpoD [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|356644706|gb|AET30549.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 432
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 165/253 (65%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ ++ +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GNEEIDIAKRIENGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++E LE VLDTL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|375094942|ref|ZP_09741207.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655675|gb|EHR50508.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 346
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 185/317 (58%), Gaps = 23/317 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA EE+ L+ I+ + FAQ
Sbjct: 47 ADLVRVYLNGIGKTALLTAEEEVDLAKRIE------------------AGVFAQHVLDTA 88
Query: 271 VD---QR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D QR EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 89 EDLPRQRRVELTALVRDGQRAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 148
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD SKGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ +
Sbjct: 149 AVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQL 208
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR +EE+A G++ +++ ++L + P SLD +G ++ + I D EA AE
Sbjct: 209 GREATHEELAAEAGIAEEKVASLLDHARDPVSLDMPVGSEEDAPLGDFIEDAEATDAESA 268
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+I +++DL +VL TL+ RE+ V+R R+GL+DG+ +TL +IG+ G+SRER+RQIE
Sbjct: 269 VISGLLQDDLRRVLATLDDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREV 328
Query: 506 FRKLKNKKRTKHLMQYA 522
KL+ +R L YA
Sbjct: 329 MSKLRQGERADRLRAYA 345
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 204/358 (56%), Gaps = 13/358 (3%)
Query: 167 RSRRQTERKARRTRAAEKAAAN--VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 224
R RRQ E A AE A+ V + R+ R + +D +R
Sbjct: 125 RRRRQPEEDATSEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKV 184
Query: 225 RLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
LL A EE++L+ I+ L +E +RE S G AQ +R++ G
Sbjct: 185 ALLNAEEEVELAKRIEAGLFAVEKMRE--SAEKGEKLPVAQ--------RRDMTWICRDG 234
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 235 NRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 294
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +
Sbjct: 295 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPE 354
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+
Sbjct: 355 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLS 414
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 415 EREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 472
>gi|447912860|ref|YP_007394272.1| RNA polymerase sigma factor RpoD [Enterococcus faecium NRRL B-2354]
gi|445188569|gb|AGE30211.1| RNA polymerase sigma factor RpoD [Enterococcus faecium NRRL B-2354]
Length = 369
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + + + +KE LE VLDTL R
Sbjct: 252 REILKIAQGPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|319651585|ref|ZP_08005712.1| RNA polymerase sigma factor [Bacillus sp. 2_A_57_CT2]
gi|317396652|gb|EFV77363.1| RNA polymerase sigma factor [Bacillus sp. 2_A_57_CT2]
Length = 374
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ ++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPDKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 257 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 188/288 (65%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L+ +RE L ER PT +WA AAGV + +L + + G L
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR + E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAASAAELAEELDLTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + E+ + ++ DLE+++ L P+
Sbjct: 203 RDYLEKARQPLSLDLRVGDNQDTELGELLEDT-GPSPEEFTAQVALRMDLEELMADLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL DG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QREVLSLRFGLRDGQAMTLAKIGDRLNISRERVRQIEREALTKLRKRK 309
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 218/362 (60%), Gaps = 11/362 (3%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 220
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 256 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 307
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 308 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 367
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
+G C+D+++ S LV+ IA+NY+G G+ +D++Q G G+++GAE+FD +KG++FST
Sbjct: 368 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 427
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
Y +WI++++ ++ +R +++PF + A ++++ARK LY +GR+P++ E+A+ TGL
Sbjct: 428 YVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGL 487
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
S+ ++ + + S DQ E D ++ E+ +++ ++D+ +L
Sbjct: 488 SLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLK 547
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
L+PRERQ++ R+G + + K+L+EIG VS+E IR++E +A L++++ ++L
Sbjct: 548 GLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRH 607
Query: 521 YA 522
Y
Sbjct: 608 YV 609
>gi|253576089|ref|ZP_04853421.1| RNA polymerase sigma-subunit [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251844432|gb|EES72448.1| RNA polymerase sigma-subunit [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 374
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 122 DEMELAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 181
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 182 DHKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPA 241
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A LS++++ ++ + P SL+ IG + + I D EA D +
Sbjct: 242 PEEIAAEMDLSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 301
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 302 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 361
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 362 HPSRSKRLKDF 372
>gi|441521299|ref|ZP_21002960.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
gi|441459131|dbj|GAC60921.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
Length = 465
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR V+ G + AQ RR L++
Sbjct: 177 LLNAEEEVELAKRIEAGLFATERLRRVME--SGEKLSVAQ------------RRDLSWIS 222
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 223 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 282
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 283 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 342
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VLD
Sbjct: 343 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLD 402
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 403 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 462
Query: 521 Y 521
Y
Sbjct: 463 Y 463
>gi|282856776|ref|ZP_06266037.1| RNA polymerase sigma factor RpoD [Pyramidobacter piscolens W5455]
gi|282585399|gb|EFB90706.1| RNA polymerase sigma factor RpoD [Pyramidobacter piscolens W5455]
Length = 642
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/341 (38%), Positives = 197/341 (57%), Gaps = 16/341 (4%)
Query: 190 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRAT---TSSSRLLTANEEMQLSAG-----IQD 241
+S K GS+++ KRPS SD S+S ++ + G ++D
Sbjct: 307 VSSKDGSSAKSKRPSRSRTKISDERESPDVPGDDDSASDFASSGGDEAPGYGEELGRMED 366
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVIS 300
+ + +R L E G P + G +REL ++ G K ++I +N+RLV+S
Sbjct: 367 VPLSDPVRMYLRE-IGKVPLLS------GEKERELAIKVEAGDAEAKQQIIDANLRLVVS 419
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G GM DL+QEG GL+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 420 IAKKYIGRGMLFLDLIQEGNLGLIRAVEKFDYRKGFKFSTYATWWIRQAITRAIADQART 479
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HMVE ++ +QL + GR P++EE+A + R+ + + P SL+
Sbjct: 480 IRIPVHMVETINKMVRISRQLVQKLGREPSDEEIAHEMEIESGRVEEIRRIAQLPVSLET 539
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
IG ++ + + I D + ED + E +E++LD L+ RER+V+R+RFGLEDGR
Sbjct: 540 PIGEEEDSQLGDFIEDRNMPSPEDAAAGNLLHEQIEEMLDALSDREREVLRYRFGLEDGR 599
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
TL+E+G GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 600 SYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKLRDF 640
>gi|421074930|ref|ZP_15535949.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
gi|392526990|gb|EIW50097.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
Length = 377
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 160/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ +S++R+
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISVERV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE LE+VL+TL PR
Sbjct: 260 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDF 375
>gi|347753174|ref|YP_004860739.1| RpoD subfamily RNA polymerase sigma-70 subunit [Bacillus coagulans
36D1]
gi|347585692|gb|AEP01959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
coagulans 36D1]
Length = 377
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 162/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 128 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLIKAVEKFDYK 187
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE
Sbjct: 188 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEE 247
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE +S ++ ++ + P SL+ IG + + I D +A + D + +KE
Sbjct: 248 IAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKE 307
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 308 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 367
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 368 RSKRLKDF 375
>gi|441508327|ref|ZP_20990251.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
gi|441447355|dbj|GAC48212.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
Length = 336
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 202/340 (59%), Gaps = 24/340 (7%)
Query: 191 SVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
+V G T+ RP++ E D +D +R + LL A +E++L+ I+
Sbjct: 12 TVAPGDTTP-SRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---- 66
Query: 245 LEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
GL + VL+ R + +AA +R+L + G + ++ +N+RLV+S+A
Sbjct: 67 -AGLYAKHVLATR-------KRLSAAK---KRDLAIVVREGETARSHLLEANLRLVVSLA 115
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+VE ++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +
Sbjct: 176 LPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPV 235
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G ++ + I D EA +AE +I M D+ VL TL+ RE+QV+R R+GL+DG+ +
Sbjct: 236 GSDEEAPLGDFIEDAEATSAESAVIAGLMHTDVRAVLATLDEREQQVIRMRYGLDDGQPR 295
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
TL +IG + G+SRER+RQIE KL+ +R + L YA
Sbjct: 296 TLDQIGRMFGLSRERVRQIEREVMGKLRQGERAERLRAYA 335
>gi|302391478|ref|YP_003827298.1| RpoD subfamily RNA polymerase sigma-70 subunit [Acetohalobium
arabaticum DSM 5501]
gi|302203555|gb|ADL12233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Acetohalobium
arabaticum DSM 5501]
Length = 358
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 109 ELAKRMEEGDMEAKRMLVEANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIKAVEKFDYT 168
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ +S++DQ+RTIR+P HMVE +V + L E GR P EE
Sbjct: 169 KGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKVIRVSRHLLQELGREPTPEE 228
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE LS +++ VL + P SL+ IG ++ + I D +A ++E
Sbjct: 229 IAEEMDLSEEKVREVLKISQEPVSLETPIGEEEDSHLGDFIEDDDAPAPSVAASHMMLQE 288
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L++VLDTL+ RE++V+ RFG+EDGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 289 QLDEVLDTLSDREKRVLELRFGVEDGRSRTLEEVGKEFGVTRERIRQIEAKALRKLRHPS 348
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 349 RSKKLKDY 356
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 184/292 (63%), Gaps = 1/292 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ L +E L+ + PT +W + ++ L ++L+ G
Sbjct: 37 LLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQK 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ ++ DL+QEG GL RG EKFD +KG+KFSTY +WW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPTKGYKFSTYGYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++Q RTIRLP H+ E ++K +++L + GR P ++AE L K++
Sbjct: 157 IRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVDIAEELSLDPKQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL + P SL+ ++G +++++ +++ D + E KF++++++ +L LNP+
Sbjct: 217 RDYLLLARQPVSLELRVGSDKDIELQDMLED-NGLSPELYADHKFLQQNIQNLLSKLNPQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517
+RQ++ +RFGL DG +L EIG+ MG+SRER+RQIE A L+ K H
Sbjct: 276 QRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRRHKDKIH 327
>gi|444432030|ref|ZP_21227190.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
gi|443887204|dbj|GAC68911.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
Length = 340
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 198/332 (59%), Gaps = 19/332 (5%)
Query: 197 TSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
++R RP++ E D +D +R + LL A +E++L+ I+ L +
Sbjct: 21 STRGTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIETGLYA---KH 77
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
VL+ + S T +R+L + + G + ++ +N+RLV+S+AK Y G GM
Sbjct: 78 VLATKKRLSAT----------KKRDLAQIVREGEHARAHLLEANLRLVVSLAKRYTGRGM 127
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 128 PLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 187
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKP 430
++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++
Sbjct: 188 VNKLARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPL 247
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
+ I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG +
Sbjct: 248 GDFIEDAEATSAENAVIAGLLHTDVRSVLSTLDEREQQVIRMRYGLDDGQPRTLDQIGRM 307
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
G+SRER+RQIE KL+ R + L YA
Sbjct: 308 FGLSRERVRQIEREVMGKLRQGDRAERLRAYA 339
>gi|254721884|ref|ZP_05183673.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. A1055]
Length = 373
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G G+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKRRLAEANLRLVVSIAKRYVGRGILFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|381210379|ref|ZP_09917450.1| RNA polymerase sigma factor RpoD [Lentibacillus sp. Grbi]
Length = 373
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKKRLSEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + LS ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGKEMELSPDKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAVSPSDHASYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 371
>gi|339010526|ref|ZP_08643096.1| RNA polymerase sigma factor RpoD [Brevibacillus laterosporus LMG
15441]
gi|338772681|gb|EGP32214.1| RNA polymerase sigma factor RpoD [Brevibacillus laterosporus LMG
15441]
Length = 374
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYQKGYKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE L+ +++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAEKMDLTPEKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D EA D + +KE LE VLDTL R
Sbjct: 257 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVLDTLTDR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|378717650|ref|YP_005282539.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
gi|375752353|gb|AFA73173.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
Length = 339
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 199/333 (59%), Gaps = 21/333 (6%)
Query: 196 STSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--R 249
+TS R + Q++D P +R + LL A +E++L+ I+ GL +
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAK 75
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
VL+ R + +AA +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 76 HVLATR-------KRLSAAK---KRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRG 125
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 126 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE 185
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++
Sbjct: 186 QVNKIARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAP 245
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG
Sbjct: 246 LGDFIEDAEATSAENAVIAGLLHSDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGR 305
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ G+SRER+RQIE KL+ R + L YA
Sbjct: 306 MFGLSRERVRQIEREVMGKLRQGDRAERLRAYA 338
>gi|402815815|ref|ZP_10865407.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
gi|402506855|gb|EJW17378.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
Length = 376
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 127 ELAKRIEQGDEEAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHS 186
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 187 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEE 246
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A LS++++ ++ + P SL+ IG + + I D EA D + +KE
Sbjct: 247 IAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKE 306
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 307 QLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 366
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 367 RSKRLKDF 374
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 182/288 (63%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L ++ P+ +WAA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESEVKQTVQQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPAEIAQELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD K+G NQ+ + E++ D E ++ E + ++F+++DL +L L P+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQDTELQEMLED-EGQSPEYYMTQEFLRQDLNNLLSELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGLEDG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 271 QREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRR 318
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + +L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + +++ D T ED ++ ++ DL++++ L +
Sbjct: 204 REYLDRARLPLSLDLRVGDNQDTELGDLLEDT-GTTPEDFALQSSLRTDLDQLMAELTQQ 262
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+R+V+ RFGLEDG+ TL +IG+ + +SRER+RQIE A KL+ +K+
Sbjct: 263 QREVLALRFGLEDGQTLTLAKIGDRLNISRERVRQIEREALTKLRKRKQ 311
>gi|312869100|ref|ZP_07729274.1| RNA polymerase sigma factor RpoD [Lactobacillus oris PB013-T2-3]
gi|311095346|gb|EFQ53616.1| RNA polymerase sigma factor RpoD [Lactobacillus oris PB013-T2-3]
Length = 380
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 49/345 (14%)
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
R +A EK + N M S T V +DP+R LLTA+EE++L+
Sbjct: 83 RALKATEKLSQNAMKDTSAPTG---------VKINDPVRMYLKEIGRVNLLTADEEVKLA 133
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
L++E EV K ++ +N+R
Sbjct: 134 ------LRIEQGDEV----------------------------------AKQQLAEANLR 153
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA WWI+QA+ ++++D
Sbjct: 154 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWWIRQAITRAIAD 213
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
Q+RTIR+P HMVE ++ ++QL + GR P EE+ + +++ +L + P
Sbjct: 214 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKIRNILKIAQEPV 273
Query: 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476
SL+ IG + + I D +A + D + MK+ LE VLDTL RE V+R RFGL
Sbjct: 274 SLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGL 333
Query: 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 334 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|336114403|ref|YP_004569170.1| RpoD subfamily RNA polymerase sigma-70 subunit [Bacillus coagulans
2-6]
gi|335367833|gb|AEH53784.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
coagulans 2-6]
Length = 377
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 162/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 128 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLIKAVEKFDYR 187
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE
Sbjct: 188 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEE 247
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE +S ++ ++ + P SL+ IG + + I D +A + D + +KE
Sbjct: 248 IAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKE 307
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 308 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 367
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 368 RSKRLKDF 375
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 163/250 (65%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL+ G + ++ +N+RLV+S+AK Y G G+ L DL+QEG GL+R EKFD
Sbjct: 127 RRELKTVARDGQAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQEGNLGLIRAMEKFDY 186
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +E
Sbjct: 187 AKGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLVEQVNKLSRIKRELHQQLGREATSE 246
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E++ TG+ R+ +L + P SLD +G ++ + I D E +AE+ +I F+
Sbjct: 247 ELSRETGIPEHRIADLLDHSRDPVSLDMPVGADEEAPLGDFIEDSEGASAENAVIAGFLH 306
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TLN E+QV+R R+GL+DG+ +TL +IG++ +SRER+RQIE KL+N
Sbjct: 307 RDVRTVLATLNEVEQQVIRLRYGLDDGQPRTLDQIGKVFSLSRERVRQIEREVMVKLRNG 366
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 367 DRAERLRSYA 376
>gi|386386524|ref|ZP_10071665.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385666011|gb|EIF89613.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 409
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 12/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ G+P AA +D R + G +
Sbjct: 124 LLTAAEEVELARCVEAGLFAE-------EKLAGTPDLNDSPLAADLD-----RLVVLGRM 171
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 172 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 231
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E+G+ P +EVA L +R+
Sbjct: 232 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEHGQEPTADEVAAQLDLPPERI 291
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL + P SL +G ++ ++I D +A + + ++E LE VL TL R
Sbjct: 292 GEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGER 351
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 352 ERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGY 407
>gi|352518192|ref|YP_004887509.1| RNA polymerase sigma factor RpoD [Tetragenococcus halophilus NBRC
12172]
gi|348602299|dbj|BAK95345.1| RNA polymerase sigma factor RpoD [Tetragenococcus halophilus NBRC
12172]
Length = 368
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYIGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFG++DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EENVLRLRFGIDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|433462816|ref|ZP_20420387.1| RNA polymerase sigma factor RpoD [Halobacillus sp. BAB-2008]
gi|432188272|gb|ELK45476.1| RNA polymerase sigma factor RpoD [Halobacillus sp. BAB-2008]
Length = 377
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K + +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 140 AKRDLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+A+ L+ ++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAQDMDLTPDKV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 260 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 375
>gi|359767854|ref|ZP_09271636.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
gi|359314770|dbj|GAB24469.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
Length = 339
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 199/333 (59%), Gaps = 21/333 (6%)
Query: 196 STSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--R 249
+TS R + Q++D P +R + LL A +E++L+ I+ GL +
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAK 75
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
VL+ R + +AA +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 76 HVLATR-------KRLSAAK---KRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRG 125
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 126 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE 185
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++
Sbjct: 186 QVNKIARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAP 245
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I D EA +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG
Sbjct: 246 LGDFIEDAEATSAENAVIAGLLHSDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGR 305
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ G+SRER+RQIE KL+ R + L YA
Sbjct: 306 MFGLSRERVRQIEREVMGKLRQGDRAERLRAYA 338
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q + L +RE L+ + G PT +WA A+ ++ EL + +
Sbjct: 23 LLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPLELNQAIADADE 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR P+ E+A+ L+ ++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAKELDLTPAQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ D A + E+ +++ + DLE+++ L P+
Sbjct: 203 REYLEKARLPLSLDLRLGDNHDTELGEMLEDTGA-SPEEFVMQSSLSNDLERLMANLTPQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGL+DG+ TL IGE++ +SRER+RQIE A KL+ K
Sbjct: 262 QREVISMRFGLKDGQSMTLARIGEILNISRERVRQIEREALTKLRKSK 309
>gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
Length = 466
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR V+ G + AQ RR L++
Sbjct: 178 LLNAEEEVELAKRIEAGLFATERLRRVME--SGEKLSVAQ------------RRDLSWIS 223
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 224 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 284 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 343
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VLD
Sbjct: 344 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLD 403
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 404 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 463
Query: 521 Y 521
Y
Sbjct: 464 Y 464
>gi|384566591|ref|ZP_10013695.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522445|gb|EIE99640.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 343
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 158/237 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WW
Sbjct: 106 AKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYATWW 165
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ GR NEE+A +G++ ++
Sbjct: 166 IRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAEAKV 225
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++L + P SLD +G ++ + I D EA AE +I +++DL +VL TL+ R
Sbjct: 226 ASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLQDDLRRVLATLDDR 285
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
E+QV+R R+GL+DG+ +TL +IG+ +SRER+RQIE KL++ +R L YA
Sbjct: 286 EQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMTKLRHGERADRLRAYA 342
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 191/305 (62%), Gaps = 12/305 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 278
LL +EE+ L+ +QD +KL LR L + G PT A+W A A + +L++
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQ 119
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD KG++F
Sbjct: 120 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 179
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++L E GR P E++A
Sbjct: 180 STYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASEL 239
Query: 399 GLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
++ ++ +L+ + PR SL+ K+G +++ + +++ + + E+ ++++ + DL+
Sbjct: 240 EMTPPQVRELLV--RVPRSVSLETKVGKDKDTELGDLLETDDI-SPEETMMREALHRDLQ 296
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
++L L RER V+R RFGL DGR +L EIG + +SRER+RQIE+ A +KL+ KR
Sbjct: 297 QLLSDLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRN 356
Query: 517 HLMQY 521
+ Y
Sbjct: 357 RVRDY 361
>gi|339635193|ref|YP_004726834.1| RNA polymerase sigma factor [Weissella koreensis KACC 15510]
gi|420161189|ref|ZP_14667960.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella koreensis
KCTC 3621]
gi|338854989|gb|AEJ24155.1| RNA polymerase sigma factor [Weissella koreensis KACC 15510]
gi|394745939|gb|EJF34757.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella koreensis
KCTC 3621]
Length = 377
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 140 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L S+ GR P EE+ ++ +++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRSLLSDLGREPTPEEIGAEMDIATEKV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 260 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVLDTLTDR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPTRSKQLRDF 375
>gi|259503187|ref|ZP_05746089.1| RNA polymerase sigma factor [Lactobacillus antri DSM 16041]
gi|259168844|gb|EEW53339.1| RNA polymerase sigma factor [Lactobacillus antri DSM 16041]
Length = 380
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 49/345 (14%)
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
R +A EK + N M S T V +DP+R LLTA+EE++L+
Sbjct: 83 RALKATEKLSQNAMKDTSAPTG---------VKINDPVRMYLKEIGRVNLLTADEEVKLA 133
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
L++E EV K ++ +N+R
Sbjct: 134 ------LRIEQGDEV----------------------------------AKQQLAEANLR 153
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA WWI+QA+ ++++D
Sbjct: 154 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWWIRQAITRAIAD 213
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
Q+RTIR+P HMVE ++ ++QL + GR P EE+ + +++ +L + P
Sbjct: 214 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPV 273
Query: 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476
SL+ IG + + I D +A + D + MK+ LE VLDTL RE V+R RFGL
Sbjct: 274 SLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGL 333
Query: 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 334 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|421059039|ref|ZP_15521671.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B3]
gi|421067092|ref|ZP_15528606.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans A12]
gi|421072461|ref|ZP_15533570.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pelosinus
fermentans A11]
gi|392445661|gb|EIW22972.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pelosinus
fermentans A11]
gi|392450830|gb|EIW27839.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans A12]
gi|392459720|gb|EIW36105.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B3]
Length = 377
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 160/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ +S++R+
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISVERV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE LE+VL+TL PR
Sbjct: 260 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDF 375
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 199/346 (57%), Gaps = 19/346 (5%)
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AA K+ V + R+ R + +D +R LL A EE++L+ I+
Sbjct: 187 AAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 246
Query: 241 -DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNI 295
L E LR ++ G + AQ +R LN+ G K+ ++ +N+
Sbjct: 247 AGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWISRDGNRAKNHLLEANL 292
Query: 296 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 355
RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++
Sbjct: 293 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 352
Query: 356 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415
DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + + P
Sbjct: 353 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 412
Query: 416 RSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFG 475
SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE VVR RFG
Sbjct: 413 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFG 472
Query: 476 LEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
L DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 473 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 518
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 179/318 (56%), Gaps = 23/318 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 143 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 186
Query: 267 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL
Sbjct: 187 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 246
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL
Sbjct: 247 IRAVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQ 306
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAE 443
+ GR P EE+ +S R+ + + P SL+ IG ++ + + I D +A
Sbjct: 307 DLGRDPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDAQAVVPA 366
Query: 444 DLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503
D ++E L +VLD L RER+V+ RFGLEDG +TL+E+G GV+RERIRQIES
Sbjct: 367 DAASFSMLQEQLTQVLDGLAERERKVIELRFGLEDGHPRTLEEVGREFGVTRERIRQIES 426
Query: 504 SAFRKLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 427 KTLAKLRHPSRSSKLKDY 444
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 190/300 (63%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L ++ L+ + P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPSEIAKALDLEPDQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D E + ++ + ++ M++DL+ +L L P+
Sbjct: 212 REFLSMSRQPISLDVRVGDNQDTELSELLED-EGISPDNYITQELMRQDLQDLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL+DG+ +L +IG+ M +SRER+RQ+E A +L ++R ++ +Y + S
Sbjct: 271 QREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQL--RRRRSNVKEYIVAS 328
>gi|363420377|ref|ZP_09308469.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
gi|359735619|gb|EHK84576.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
Length = 320
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 191/312 (61%), Gaps = 13/312 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA +E++L+ I+ L + L E T + +AA
Sbjct: 21 ADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAKHLLE----------TKKRLSAAK- 69
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 70 --KRDLAIIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR
Sbjct: 128 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+EE+A +G+ ++++ +L + P SLD +G ++ + I D EA +AE +I
Sbjct: 188 DEELANESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETAVIAGL 247
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+ D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG+L G+SRER+RQIE KL+
Sbjct: 248 LHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLR 307
Query: 511 NKKRTKHLMQYA 522
R + L YA
Sbjct: 308 EGDRAERLRAYA 319
>gi|345851793|ref|ZP_08804757.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345636744|gb|EGX58287.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 442
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 181/296 (61%), Gaps = 13/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ GG+P A +L R + G +
Sbjct: 158 LLTAAEEVELARRVEAGLFAE-------EKLGGTPDLDSELAL------DLDRLVVMGRM 204
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 205 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 264
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P +EEVA+ L +R+
Sbjct: 265 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTHEEVADHLDLLPERV 324
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL + P SL +G ++ ++I D +A + + ++E LE VL TL R
Sbjct: 325 SEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGER 384
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 385 ERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGY 440
>gi|373859068|ref|ZP_09601800.1| RNA polymerase sigma factor RpoD [Bacillus sp. 1NLA3E]
gi|372451159|gb|EHP24638.1| RNA polymerase sigma factor RpoD [Bacillus sp. 1NLA3E]
Length = 375
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ ++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPDKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|227488742|ref|ZP_03919058.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542262|ref|ZP_03972311.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091164|gb|EEI26476.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182091|gb|EEI63063.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 327
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 190/325 (58%), Gaps = 12/325 (3%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
R +R + +D +R + LL+A EE++L+ ++ L R +L++
Sbjct: 15 RNRRHQTNDNPAADLVRVYLNGIGKTPLLSAEEEVELAKTVEVGLYA---RHLLND---- 67
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
P + A +R+L+ G ++ M+ +N+RLV+S+AK Y G GM L DL+QE
Sbjct: 68 -PEYKPTRAM----KRDLKELAREGDKARNHMLEANLRLVVSLAKRYSGRGMPLLDLIQE 122
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +
Sbjct: 123 GNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIK 182
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPE 438
+++Y + GR NEE+AE +G+ ++ + + P SLD +G ++ + I D E
Sbjct: 183 REMYQQFGREVTNEELAEESGIDENKIEMLFRQSRDPVSLDMPVGADEEAPLGDFIEDSE 242
Query: 439 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERI 498
A AE+ ++ D+ V+DTL RE+ V+R R+GL+DG +TL +IG G+SRER+
Sbjct: 243 ATDAEEAVVVSLRHSDIRAVIDTLEGREQDVIRMRYGLDDGVPRTLDQIGRRYGLSRERV 302
Query: 499 RQIESSAFRKLKNKKRTKHLMQYAI 523
RQIE KL+ R + L YA+
Sbjct: 303 RQIEREVMAKLREGSRAEKLRAYAV 327
>gi|379029019|dbj|BAL66752.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 297
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 158/233 (67%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA
Sbjct: 64 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQA 123
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ +++++ GR +EE+A +G+ + +++ +L
Sbjct: 124 ITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLL 183
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLD +G + + I D EA +AE+ +I + + D+ VL TL+ RE QV
Sbjct: 184 EHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQV 243
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+R RFGL+DG+ +TL +IG+L G+SRER+RQIE KL++ +R L YA
Sbjct: 244 IRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSYA 296
>gi|288574317|ref|ZP_06392674.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570058|gb|EFC91615.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 381
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K K+I +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD
Sbjct: 132 ELAKRVEDGDQVAKQKIIDANLRLVVSIAKKYIGRGMLFLDLIQEGNLGLIRAVEKFDYR 191
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL GR P +EE
Sbjct: 192 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKMVRVSRQLVQRMGREPTDEE 251
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
++EA + ++ + + P SL+ IG ++ + + I D + + ED + E
Sbjct: 252 ISEAMEIESTKVEEIRRIAQLPVSLETPIGEEEDSQLGDFIEDRDMPSPEDAASCNLLHE 311
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+E +LD L+ RER+V+R+RFGLEDGR TL+E+G GV+RERIRQIE+ A RKL++
Sbjct: 312 QIEDMLDALSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKLRHPS 371
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 372 RSKKLRDF 379
>gi|383823557|ref|ZP_09978747.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
gi|383338836|gb|EID17195.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
Length = 527
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/302 (40%), Positives = 183/302 (60%), Gaps = 21/302 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L +ER PT LRR + + +
Sbjct: 239 LLNAEEEVELAKRIEAGLYASQLLAETAERGEKLPTA-------------LRRDMMW--I 283
Query: 286 CKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFS
Sbjct: 284 CRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 343
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+
Sbjct: 344 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD 403
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVL 459
++ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL
Sbjct: 404 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL 463
Query: 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLM 519
+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 464 ETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR 523
Query: 520 QY 521
Y
Sbjct: 524 DY 525
>gi|317128328|ref|YP_004094610.1| RpoD subfamily RNA polymerase sigma-70 subunit [Bacillus
cellulosilyticus DSM 2522]
gi|315473276|gb|ADU29879.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
cellulosilyticus DSM 2522]
Length = 372
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 135 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGYKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EEV++ L+ ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVSKEMDLTPDKV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA D + +KE LE VLDTL R
Sbjct: 255 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVLDTLTDR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 315 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 370
>gi|294501280|ref|YP_003564980.1| RNA polymerase sigma factor [Bacillus megaterium QM B1551]
gi|295706627|ref|YP_003599702.1| RNA polymerase sigma factor [Bacillus megaterium DSM 319]
gi|294351217|gb|ADE71546.1| RNA polymerase sigma factor [Bacillus megaterium QM B1551]
gi|294804286|gb|ADF41352.1| RNA polymerase sigma factor [Bacillus megaterium DSM 319]
Length = 377
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+AE L+ +++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEDMDLTPEKV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 260 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 375
>gi|163781693|ref|ZP_02176693.1| RNA polymerase sigma factor RpoD [Hydrogenivirga sp. 128-5-R1-1]
gi|159882913|gb|EDP76417.1| RNA polymerase sigma factor RpoD [Hydrogenivirga sp. 128-5-R1-1]
Length = 571
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 165/238 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K MI SN+RLV+SIAK Y G++ DL+QEG GL++ +K+D KG+KFSTYA WW
Sbjct: 334 AKQVMIQSNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWW 393
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HM+E R+ +A K+L+ E GR P EE+A+ G++ ++
Sbjct: 394 IRQAITRAIADQARTIRIPVHMIETINRIIKASKRLFQELGREPTPEEIAKHLGMTPDKV 453
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL S + P SL+ IG +++ + I D E+ + +K ++E LE+VL+TL+ +
Sbjct: 454 RKVLRSAQEPISLETPIGDDEDTFLKDFIEDKSVPNPEEYVSRKLLREQLERVLETLSDK 513
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
ER+++R+R+GL DG TL+++G++ V+RERIRQIES A RKL++ R K+L + +
Sbjct: 514 EREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLRHPSRAKYLKDFEL 571
>gi|300768133|ref|ZP_07078038.1| RNA polymerase sigma factor rpoD [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180761|ref|YP_003924889.1| RNA polymerase sigma factor RpoD [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380032739|ref|YP_004889730.1| DNA-directed RNA polymerase, sigma factor 42 [Lactobacillus
plantarum WCFS1]
gi|418275500|ref|ZP_12890823.1| DNA-directed RNA polymerase, sigma factor 42 [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448821467|ref|YP_007414629.1| RNA polymerase sigma factor [Lactobacillus plantarum ZJ316]
gi|300494197|gb|EFK29360.1| RNA polymerase sigma factor rpoD [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046252|gb|ADN98795.1| RNA polymerase sigma factor RpoD [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342241982|emb|CCC79216.1| DNA-directed RNA polymerase, sigma factor 42 [Lactobacillus
plantarum WCFS1]
gi|376009051|gb|EHS82380.1| DNA-directed RNA polymerase, sigma factor 42 [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448274964|gb|AGE39483.1| RNA polymerase sigma factor [Lactobacillus plantarum ZJ316]
Length = 368
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 131 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTDR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|403237525|ref|ZP_10916111.1| RNA polymerase sigma factor RpoD [Bacillus sp. 10403023]
Length = 339
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 102 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 161
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 162 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 221
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 222 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDR 281
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 282 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 337
>gi|392961840|ref|ZP_10327294.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans DSM 17108]
gi|421055753|ref|ZP_15518715.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B4]
gi|392439518|gb|EIW17229.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B4]
gi|392453407|gb|EIW30288.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans DSM 17108]
Length = 371
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 160/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 134 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ +S++R+
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISVERV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE LE+VL+TL PR
Sbjct: 254 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 314 EEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDF 369
>gi|417885525|ref|ZP_12529679.1| RNA polymerase sigma factor RpoD [Lactobacillus oris F0423]
gi|341595447|gb|EGS38096.1| RNA polymerase sigma factor RpoD [Lactobacillus oris F0423]
Length = 380
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 49/345 (14%)
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
R +A EK + N M S T V +DP+R LLTA+EE++L+
Sbjct: 83 RALKATEKLSQNAMKDTSAPTG---------VKINDPVRMYLKEIGRVNLLTADEEVKLA 133
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
L++E EV K ++ +N+R
Sbjct: 134 ------LRIEQGDEV----------------------------------AKQQLAEANLR 153
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA WWI+QA+ ++++D
Sbjct: 154 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWWIRQAITRAIAD 213
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
Q+RTIR+P HMVE ++ ++QL + GR P EE+ + +++ +L + P
Sbjct: 214 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPV 273
Query: 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476
SL+ IG + + I D +A + D + MK+ LE VLDTL RE V+R RFGL
Sbjct: 274 SLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGL 333
Query: 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 334 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|212638699|ref|YP_002315219.1| RNA polymerase sigma factor RpoD [Anoxybacillus flavithermus WK1]
gi|212560179|gb|ACJ33234.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Anoxybacillus flavithermus WK1]
Length = 372
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 123 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE
Sbjct: 183 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D +A + + + +KE
Sbjct: 243 IAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKE 302
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 303 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 362
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 363 RSKRLKDF 370
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 185/319 (57%), Gaps = 8/319 (2%)
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTF 262
V DP+R LL +EE+QL+ G D K + E+ + G P
Sbjct: 127 VDSFGIDDPVRMYLKEIGKVNLLNPDEEVQLAQDMGAGDAAKAR-MAEIEAAEKRGEPIV 185
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+++ L++ + G K ++ +N+RLV+SIAK Y G GM DL+QEG G
Sbjct: 186 LTPE-----EEKALKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLG 240
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL
Sbjct: 241 LIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLL 300
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETA 442
E G P+ EE+AE + + ++ +L + P SL+ IG ++ + I D +A
Sbjct: 301 QELGHDPSPEEIAEEMNMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDASEP 360
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
+ +KE L VL TL PRE +V++ RFG+EDGR +TL+E+G+ V+RERIRQIE
Sbjct: 361 SEAASFTLLKEQLVDVLGTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQIE 420
Query: 503 SSAFRKLKNKKRTKHLMQY 521
+ A RKL++ R+K L +
Sbjct: 421 AKALRKLRHPSRSKKLKDF 439
>gi|392989884|ref|YP_006488477.1| RNA polymerase sigma factor RpoD [Enterococcus hirae ATCC 9790]
gi|392337304|gb|AFM71586.1| RNA polymerase sigma factor RpoD [Enterococcus hirae ATCC 9790]
Length = 369
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + + + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|384044875|ref|YP_005492892.1| RNA polymerase sigma factor [Bacillus megaterium WSH-002]
gi|345442566|gb|AEN87583.1| RNA polymerase sigma factor [Bacillus megaterium WSH-002]
Length = 377
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+AE L+ +++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEDMDLTPEKV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 260 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 375
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L ++ L++ P+ +WA AA +D +EL R L G +
Sbjct: 37 LLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RL++S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++ L GR P+ E+A+ ++ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRDLSQTLGRSPSIAELAQELEITPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G N + + E++ DP A + ED +I+ + +LE+++ L +
Sbjct: 217 RDCLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEDYVIQSSLSSELERMMTHLTTQ 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V++ RFGL DG+ TL IGE++ +SRER+RQIE A +L+ K
Sbjct: 276 QREVIKLRFGLVDGQSMTLARIGEVLNISRERVRQIEREALTRLRRCK 323
>gi|365904101|ref|ZP_09441860.1| RNA polymerase sigma factor RpoD [Lactobacillus versmoldensis KCTC
3814]
Length = 383
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD GFKFSTYA WW
Sbjct: 146 AKQKLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRLGFKFSTYATWW 205
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ ++ ++
Sbjct: 206 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMATTKV 265
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + ED + +KE LE VLDTL R
Sbjct: 266 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDSDATSPEDHASYELLKEQLENVLDTLTDR 325
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 326 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 381
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 204/350 (58%), Gaps = 12/350 (3%)
Query: 174 RKARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEE 232
R A TR++++ +A+ V + R+ R + +D +R LL A EE
Sbjct: 128 RVAPTTRSSQQKSADFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEE 187
Query: 233 MQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
++L+ I+ L E +R++ SP +R+LR + G K+ ++
Sbjct: 188 VELAKRIEAGLYGAERIRKLFESNDKLSPQM----------RRDLRWIVRDGERAKNHLL 237
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 238 EANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT 297
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 298 RAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQY 357
Query: 412 PKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVR 471
+ P SLDQ IG + + + I D EA A D + +++ L+ VL TL+ RE VVR
Sbjct: 358 AREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVR 417
Query: 472 WRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 418 LRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 467
>gi|294622679|ref|ZP_06701641.1| RNA polymerase sigma factor RpoD [Enterococcus faecium U0317]
gi|425032753|ref|ZP_18437770.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 515]
gi|431776262|ref|ZP_19564529.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2560]
gi|291597877|gb|EFF29007.1| RNA polymerase sigma factor RpoD [Enterococcus faecium U0317]
gi|403012152|gb|EJY25413.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 515]
gi|430641596|gb|ELB77397.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2560]
Length = 369
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + + + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|416134915|ref|ZP_11598376.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4452]
gi|364092345|gb|EHM34726.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4452]
Length = 369
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + + + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|269836760|ref|YP_003318988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269786023|gb|ACZ38166.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 538
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 157/239 (65%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + + K+ +N+RLV+S+AK Y G GM++ DLVQEG GL+R EKF KGFKFSTYA
Sbjct: 298 GDIARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFSTYA 357
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L E GR P +EE+A GL
Sbjct: 358 TWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMGLPP 417
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
++ +L + P SL+ IG ++ + I D +A D K +KE ++ VL +L
Sbjct: 418 DKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASLKLLKEQVDDVLGSL 477
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RER+V+ RFGL+DGR +TL+E+G GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 478 GDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLRHPSRSKKLRDY 536
>gi|251796255|ref|YP_003010986.1| RpoD subfamily RNA polymerase sigma-70 subunit [Paenibacillus sp.
JDR-2]
gi|247543881|gb|ACT00900.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus sp.
JDR-2]
Length = 376
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 162/251 (64%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL RR+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 124 DEIELARRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 183
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 184 DHQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 243
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A LS ++ ++ + P SL+ IG + + I D EA D +
Sbjct: 244 PEEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 303
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 304 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 363
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 364 HPSRSKRLKDF 374
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L+ IQ+L+ LE RE L ++ P+ +WA AA + ++ L +++ G
Sbjct: 23 LLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+SIAK Y ++L DL+QEG G+ RG EKFD KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFDPKKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SR IRLP H+ E ++++ +++L E GR E++EA L+ +++
Sbjct: 143 IRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELSEALELTTEQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD K+G N + + E++ D + ++ ED ++ DL +++ L +
Sbjct: 203 RDYLGKARQPLSLDLKVGDNNDTELGELLED-KGQSPEDFTDYSCLQFDLRRMMSDLTQQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++ V+R R+GL+DG+ TL +IG ++ +SRER+RQIE A KL+ +K
Sbjct: 262 QQDVIRLRYGLDDGKPLTLSKIGTILNISRERVRQIEREALTKLRKRK 309
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 185/319 (57%), Gaps = 29/319 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
SDP+R T RLLTA EE+ L+ AG+ KL R++ SP Q
Sbjct: 101 SDPVRMYLKTIGRVRLLTAAEEVDLAKRIEAGLFASEKLAATRKI-------SPQLRQDL 153
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
A D G + K K++ +N+RLV+SIAK Y G GM L DL+QEG GL+R
Sbjct: 154 QAVEQD----------GQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRA 203
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QAV ++L+DQ RTIR+P HM E +V ++QL E G
Sbjct: 204 VEKFDYTKGYKFSTYATWWIRQAVTRALADQGRTIRIPVHMAETVNKVTRIQRQLLQELG 263
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEA----ETA 442
R P+ EE+ L+ ++ +L + P +L+ IG Q+ + + I D +A E A
Sbjct: 264 REPSPEEIGTQIDLTAHKVEEILKIAQTPVALETPIGAEQDSQLGDFIEDDDAIAPFEAA 323
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
+L++K +E VL TL RE++V++ RFGL DG+ +TL++IG G+ +ERIRQIE
Sbjct: 324 SSVLLQKH----IESVLHTLPAREKKVIQLRFGLTDGQPRTLEQIGREFGIPQERIRQIE 379
Query: 503 SSAFRKLKNKKRTKHLMQY 521
S KL + R++ L Y
Sbjct: 380 SRTLAKLSHPARSQRLRDY 398
>gi|392949005|ref|ZP_10314604.1| RNA polymerase sigma factor 42 RpoD [Lactobacillus pentosus KCA1]
gi|334880406|emb|CCB81137.1| RNA polymerase sigma factor [Lactobacillus pentosus MP-10]
gi|339638991|emb|CCC18197.1| RNA polymerase sigma factor [Lactobacillus pentosus IG1]
gi|392435824|gb|EIW13749.1| RNA polymerase sigma factor 42 RpoD [Lactobacillus pentosus KCA1]
Length = 368
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 131 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTDR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|315645989|ref|ZP_07899110.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Paenibacillus vortex V453]
gi|315278750|gb|EFU42064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Paenibacillus vortex V453]
Length = 376
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 124 DEIELANRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 183
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+
Sbjct: 184 DYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPS 243
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A LS++++ ++ + P SL+ IG + + I D EA D +
Sbjct: 244 PEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 303
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 304 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 363
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 364 HPSRSKRLKDF 374
>gi|69249285|ref|ZP_00604924.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70 region 1.2 [Enterococcus faecium DO]
gi|257877975|ref|ZP_05657628.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,230,933]
gi|257881238|ref|ZP_05660891.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,502]
gi|257884904|ref|ZP_05664557.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,501]
gi|257889826|ref|ZP_05669479.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,410]
gi|260559026|ref|ZP_05831212.1| RNA polymerase sigma-43 factor [Enterococcus faecium C68]
gi|261207559|ref|ZP_05922244.1| RNA polymerase sigma-43 factor [Enterococcus faecium TC 6]
gi|289565071|ref|ZP_06445524.1| RNA polymerase sigma factor rpoD [Enterococcus faecium D344SRF]
gi|293556716|ref|ZP_06675279.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1039]
gi|293563374|ref|ZP_06677823.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1162]
gi|293568034|ref|ZP_06679372.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1071]
gi|294614871|ref|ZP_06694766.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1636]
gi|294618226|ref|ZP_06697809.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1679]
gi|314939477|ref|ZP_07846711.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a04]
gi|314941108|ref|ZP_07848006.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133C]
gi|314949892|ref|ZP_07853194.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0082]
gi|314951693|ref|ZP_07854736.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133A]
gi|314993960|ref|ZP_07859287.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133B]
gi|314996911|ref|ZP_07861912.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a01]
gi|383328545|ref|YP_005354429.1| RNA polymerase sigma factor RpoD [Enterococcus faecium Aus0004]
gi|389868271|ref|YP_006375694.1| RNA polymerase sigma-43 factor [Enterococcus faecium DO]
gi|406580165|ref|ZP_11055383.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD4E]
gi|406582348|ref|ZP_11057473.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD3E]
gi|406584629|ref|ZP_11059654.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD2E]
gi|406589486|ref|ZP_11063921.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD1E]
gi|410937789|ref|ZP_11369648.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD5E]
gi|415895001|ref|ZP_11550497.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4453]
gi|424791669|ref|ZP_18218011.1| RNA polymerase sigma factor RpoD [Enterococcus faecium V689]
gi|424796468|ref|ZP_18222191.1| RNA polymerase sigma factor RpoD [Enterococcus faecium S447]
gi|424821626|ref|ZP_18246653.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R501]
gi|424856308|ref|ZP_18280550.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R499]
gi|424867386|ref|ZP_18291189.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R497]
gi|424949587|ref|ZP_18365193.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R496]
gi|424954619|ref|ZP_18369509.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R494]
gi|424957543|ref|ZP_18372265.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R446]
gi|424960595|ref|ZP_18375097.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1986]
gi|424964787|ref|ZP_18378851.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1190]
gi|424967668|ref|ZP_18381352.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1140]
gi|424972400|ref|ZP_18385741.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1139]
gi|424975693|ref|ZP_18388835.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1137]
gi|424977020|ref|ZP_18390062.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1123]
gi|424981472|ref|ZP_18394205.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV99]
gi|424983417|ref|ZP_18396004.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV69]
gi|424987850|ref|ZP_18400202.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV38]
gi|424991247|ref|ZP_18403414.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV26]
gi|424994875|ref|ZP_18406790.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV168]
gi|424997773|ref|ZP_18409508.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV165]
gi|425001952|ref|ZP_18413424.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV161]
gi|425003970|ref|ZP_18415303.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV102]
gi|425009153|ref|ZP_18420185.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV1]
gi|425010373|ref|ZP_18421329.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E422]
gi|425013357|ref|ZP_18424093.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E417]
gi|425018368|ref|ZP_18428821.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C621]
gi|425019998|ref|ZP_18430327.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C497]
gi|425025859|ref|ZP_18434721.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C1904]
gi|425036841|ref|ZP_18441556.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 514]
gi|425039329|ref|ZP_18443877.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 513]
gi|425045653|ref|ZP_18449740.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 510]
gi|425049482|ref|ZP_18453329.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 509]
gi|425051398|ref|ZP_18455064.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 506]
gi|425059340|ref|ZP_18462686.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 504]
gi|425062159|ref|ZP_18465330.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 503]
gi|427395200|ref|ZP_18888122.1| RNA polymerase sigma factor rpoD [Enterococcus durans FB129-CNAB-4]
gi|430820429|ref|ZP_19439061.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0045]
gi|430821924|ref|ZP_19440505.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0120]
gi|430825044|ref|ZP_19443255.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0164]
gi|430828311|ref|ZP_19446433.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0269]
gi|430830261|ref|ZP_19448319.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0333]
gi|430833555|ref|ZP_19451567.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0679]
gi|430836259|ref|ZP_19454242.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0680]
gi|430838928|ref|ZP_19456871.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0688]
gi|430844551|ref|ZP_19462449.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1050]
gi|430846534|ref|ZP_19464392.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1133]
gi|430850131|ref|ZP_19467897.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1185]
gi|430852830|ref|ZP_19470561.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1258]
gi|430854361|ref|ZP_19472074.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1392]
gi|430858603|ref|ZP_19476230.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1552]
gi|430861922|ref|ZP_19479274.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1573]
gi|430864408|ref|ZP_19480330.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1574]
gi|430870358|ref|ZP_19483213.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1575]
gi|430958918|ref|ZP_19486782.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1576]
gi|431010111|ref|ZP_19489636.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1578]
gi|431193717|ref|ZP_19500224.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1620]
gi|431228335|ref|ZP_19501476.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1622]
gi|431259204|ref|ZP_19505381.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1623]
gi|431295498|ref|ZP_19507386.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1626]
gi|431368551|ref|ZP_19509365.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1627]
gi|431436396|ref|ZP_19513095.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1630]
gi|431503078|ref|ZP_19515314.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1634]
gi|431539169|ref|ZP_19517673.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1731]
gi|431626828|ref|ZP_19523067.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1904]
gi|431743437|ref|ZP_19532316.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2071]
gi|431745719|ref|ZP_19534558.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2134]
gi|431748772|ref|ZP_19537527.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2297]
gi|431754364|ref|ZP_19543027.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2883]
gi|431758843|ref|ZP_19547464.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3346]
gi|431766269|ref|ZP_19554762.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4215]
gi|431766733|ref|ZP_19555194.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1321]
gi|431770348|ref|ZP_19558748.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1644]
gi|431772868|ref|ZP_19561205.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2369]
gi|431778282|ref|ZP_19566493.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4389]
gi|431782362|ref|ZP_19570497.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6012]
gi|431785253|ref|ZP_19573279.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6045]
gi|68194219|gb|EAN08744.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70 region 1.2 [Enterococcus faecium DO]
gi|257812203|gb|EEV40961.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,230,933]
gi|257816896|gb|EEV44224.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,502]
gi|257820742|gb|EEV47890.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,501]
gi|257826186|gb|EEV52812.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,410]
gi|260074783|gb|EEW63099.1| RNA polymerase sigma-43 factor [Enterococcus faecium C68]
gi|260077942|gb|EEW65648.1| RNA polymerase sigma-43 factor [Enterococcus faecium TC 6]
gi|289163078|gb|EFD10925.1| RNA polymerase sigma factor rpoD [Enterococcus faecium D344SRF]
gi|291589255|gb|EFF21065.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1071]
gi|291592333|gb|EFF23947.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1636]
gi|291595506|gb|EFF26816.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1679]
gi|291601048|gb|EFF31337.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1039]
gi|291604635|gb|EFF34120.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1162]
gi|313588970|gb|EFR67815.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a01]
gi|313591562|gb|EFR70407.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133B]
gi|313596157|gb|EFR75002.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133A]
gi|313600109|gb|EFR78952.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133C]
gi|313641279|gb|EFS05859.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a04]
gi|313643734|gb|EFS08314.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0082]
gi|364091895|gb|EHM34318.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4453]
gi|378938239|gb|AFC63311.1| RNA polymerase sigma factor RpoD [Enterococcus faecium Aus0004]
gi|388533520|gb|AFK58712.1| RNA polymerase sigma-43 factor [Enterococcus faecium DO]
gi|402918645|gb|EJX39313.1| RNA polymerase sigma factor RpoD [Enterococcus faecium V689]
gi|402923024|gb|EJX43360.1| RNA polymerase sigma factor RpoD [Enterococcus faecium S447]
gi|402925744|gb|EJX45851.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R501]
gi|402930275|gb|EJX49951.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R499]
gi|402934094|gb|EJX53483.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R496]
gi|402936283|gb|EJX55470.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R494]
gi|402937981|gb|EJX57025.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R497]
gi|402943243|gb|EJX61743.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R446]
gi|402945793|gb|EJX64123.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1190]
gi|402947041|gb|EJX65273.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1986]
gi|402953044|gb|EJX70802.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1137]
gi|402953825|gb|EJX71506.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1140]
gi|402954367|gb|EJX71999.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1139]
gi|402963646|gb|EJX80498.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV99]
gi|402967402|gb|EJX83955.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1123]
gi|402971572|gb|EJX87837.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV69]
gi|402973467|gb|EJX89593.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV38]
gi|402977346|gb|EJX93169.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV26]
gi|402978850|gb|EJX94561.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV168]
gi|402984960|gb|EJY00216.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV161]
gi|402985281|gb|EJY00503.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV165]
gi|402990378|gb|EJY05251.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV1]
gi|402990785|gb|EJY05643.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV102]
gi|403000162|gb|EJY14306.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E422]
gi|403001359|gb|EJY15420.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E417]
gi|403002356|gb|EJY16337.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C621]
gi|403006182|gb|EJY19847.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C1904]
gi|403010303|gb|EJY23689.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C497]
gi|403013141|gb|EJY26268.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 514]
gi|403016367|gb|EJY29190.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 513]
gi|403026576|gb|EJY38539.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 510]
gi|403027342|gb|EJY39235.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 509]
gi|403035445|gb|EJY46833.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 504]
gi|403037666|gb|EJY48930.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 506]
gi|403039276|gb|EJY50439.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 503]
gi|404454544|gb|EKA01472.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD4E]
gi|404458200|gb|EKA04647.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD3E]
gi|404463859|gb|EKA09438.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD2E]
gi|404470756|gb|EKA15351.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD1E]
gi|410733922|gb|EKQ75844.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD5E]
gi|425724336|gb|EKU87220.1| RNA polymerase sigma factor rpoD [Enterococcus durans FB129-CNAB-4]
gi|430439560|gb|ELA49896.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0045]
gi|430443756|gb|ELA53718.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0120]
gi|430446545|gb|ELA56213.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0164]
gi|430482863|gb|ELA59962.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0333]
gi|430483606|gb|ELA60674.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0269]
gi|430486296|gb|ELA63155.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0679]
gi|430488616|gb|ELA65278.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0680]
gi|430491329|gb|ELA67802.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0688]
gi|430497141|gb|ELA73200.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1050]
gi|430536163|gb|ELA76540.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1185]
gi|430538834|gb|ELA79108.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1133]
gi|430541664|gb|ELA81809.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1258]
gi|430545230|gb|ELA85216.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1552]
gi|430548020|gb|ELA87925.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1392]
gi|430549213|gb|ELA89045.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1573]
gi|430553955|gb|ELA93629.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1574]
gi|430556603|gb|ELA96100.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1576]
gi|430559011|gb|ELA98393.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1575]
gi|430560606|gb|ELA99902.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1578]
gi|430572127|gb|ELB10993.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1620]
gi|430574637|gb|ELB13400.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1622]
gi|430577299|gb|ELB15904.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1623]
gi|430581588|gb|ELB20033.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1626]
gi|430584139|gb|ELB22489.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1627]
gi|430586993|gb|ELB25227.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1630]
gi|430587701|gb|ELB25922.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1634]
gi|430594432|gb|ELB32401.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1731]
gi|430603082|gb|ELB40625.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1904]
gi|430606869|gb|ELB44206.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2071]
gi|430609925|gb|ELB47097.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2134]
gi|430613098|gb|ELB50121.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2297]
gi|430619772|gb|ELB56591.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2883]
gi|430626970|gb|ELB63513.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3346]
gi|430627045|gb|ELB63581.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4215]
gi|430631968|gb|ELB68259.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1321]
gi|430635275|gb|ELB71371.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1644]
gi|430637556|gb|ELB73564.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2369]
gi|430643828|gb|ELB79531.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4389]
gi|430647697|gb|ELB83138.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6012]
gi|430647740|gb|ELB83179.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6045]
Length = 369
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + + + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|433444375|ref|ZP_20409294.1| RNA polymerase sigma factor rpoD [Anoxybacillus flavithermus
TNO-09.006]
gi|432001667|gb|ELK22540.1| RNA polymerase sigma factor rpoD [Anoxybacillus flavithermus
TNO-09.006]
Length = 372
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 123 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE
Sbjct: 183 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L+ +++ +L + P SL+ IG + + I D +A + + + +KE
Sbjct: 243 IAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKE 302
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 303 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 362
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 363 RSKRLKDF 370
>gi|315640587|ref|ZP_07895693.1| RNA polymerase sigma factor rpoD [Enterococcus italicus DSM 15952]
gi|315483615|gb|EFU74105.1| RNA polymerase sigma factor rpoD [Enterococcus italicus DSM 15952]
Length = 368
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 188/339 (55%), Gaps = 48/339 (14%)
Query: 191 SVKSGSTSRRKRPSVQEVDYS--------DPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
SV S + ++ +VQ+ D S DP+R LLTA EE++L+ I+
Sbjct: 68 SVHSLKNASKQEKTVQQEDLSAPTGVKINDPVRMYLKEIGRVPLLTAAEEVELALKIE-- 125
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
EG +E K ++ +N+RLV+SIA
Sbjct: 126 ---EGDQE-----------------------------------AKQRLAEANLRLVVSIA 147
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR
Sbjct: 148 KRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIR 207
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
+P HMVE ++ ++QL + GR P EE+ LS +++ +L + P SL+ I
Sbjct: 208 IPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLSTEKVREILKIAQEPVSLETPI 267
Query: 423 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482
G + + I D +A + + + +KE LE VLDTL RE V+R RFG++DGR +
Sbjct: 268 GEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRTR 327
Query: 483 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 328 TLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|422686027|ref|ZP_16744240.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4000]
gi|315029422|gb|EFT41354.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4000]
Length = 368
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 188/342 (54%), Gaps = 52/342 (15%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
+ AEKA A +S +G V +DP+R +LLTA EE++L+ I
Sbjct: 77 KEAEKAQAEDLSAPTG------------VKINDPVRMYLKEIGRVQLLTAAEEVELALKI 124
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
+ EG +E K ++ +N+RLV+
Sbjct: 125 E-----EGDQE-----------------------------------AKQRLAEANLRLVV 144
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+R
Sbjct: 145 SIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQAR 204
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIR+P HMVE ++ ++QL + GR P EE+ L +++ +L + P SL+
Sbjct: 205 TIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLE 264
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
IG + + I D +A + + + +KE LE VLDTL RE V+R RFGL++G
Sbjct: 265 TPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDNG 324
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 325 RTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|354582249|ref|ZP_09001151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
lactis 154]
gi|353199648|gb|EHB65110.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
lactis 154]
Length = 376
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 124 DEIELANRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 183
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+
Sbjct: 184 DYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPS 243
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A LS++++ ++ + P SL+ IG + + I D EA D +
Sbjct: 244 PEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 303
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 304 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 363
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 364 HPSRSKRLKDF 374
>gi|260886856|ref|ZP_05898119.1| RNA polymerase sigma factor RpoD [Selenomonas sputigena ATCC 35185]
gi|330839344|ref|YP_004413924.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Selenomonas
sputigena ATCC 35185]
gi|260863455|gb|EEX77955.1| RNA polymerase sigma factor RpoD [Selenomonas sputigena ATCC 35185]
gi|329747108|gb|AEC00465.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Selenomonas
sputigena ATCC 35185]
Length = 375
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 158/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 145 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITR 204
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL + GR P+ EE+AEA +S++R+ ++
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISVERVREIMKIA 264
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D +A + +KE LE+VLDTL RE +V+R
Sbjct: 265 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTLTEREERVLRL 324
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R++ L +
Sbjct: 325 RFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDF 373
>gi|441513656|ref|ZP_20995484.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
gi|441451602|dbj|GAC53445.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
Length = 472
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 203/353 (57%), Gaps = 19/353 (5%)
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
+++ +T A K+ V + R+ R + +D +R LL A EE+
Sbjct: 132 KESAKTEPAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV 191
Query: 234 QLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKD 288
+L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 192 ELAKRIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKN 237
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+Q
Sbjct: 238 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 297
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 298 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI 357
Query: 409 LLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 468
+ P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE
Sbjct: 358 QQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAG 417
Query: 469 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 418 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 470
>gi|403070146|ref|ZP_10911478.1| RNA polymerase sigma factor RpoD [Oceanobacillus sp. Ndiop]
Length = 371
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 134 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ E LS ++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIGEEMELSPDKV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 254 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAVSPSDHAAYELLKEQLEDVLDTLTDR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 314 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 369
>gi|392400748|ref|YP_006437348.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis Cp162]
gi|390531826|gb|AFM07555.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis Cp162]
Length = 329
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 158/251 (62%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
S GFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SMGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 199 ELAEESGIDESKIEILLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VLDTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 259 SDIRSVLDTLERREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMTKLRDG 318
Query: 513 KRTKHLMQYAI 523
R L YAI
Sbjct: 319 ARADKLRAYAI 329
>gi|337748350|ref|YP_004642512.1| protein SigA [Paenibacillus mucilaginosus KNP414]
gi|379723267|ref|YP_005315398.1| protein SigA [Paenibacillus mucilaginosus 3016]
gi|386725990|ref|YP_006192316.1| protein SigA [Paenibacillus mucilaginosus K02]
gi|336299539|gb|AEI42642.1| SigA [Paenibacillus mucilaginosus KNP414]
gi|378571939|gb|AFC32249.1| SigA [Paenibacillus mucilaginosus 3016]
gi|384093115|gb|AFH64551.1| protein SigA [Paenibacillus mucilaginosus K02]
Length = 378
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ +L +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 126 DEVDLAKRIELGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 185
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 186 DHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 245
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ LS ++ ++ + P SL+ IG + + I D EA D +
Sbjct: 246 PEEIAKEMDLSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 305
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 306 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 365
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 366 HPSRSKRLKDF 376
>gi|227551146|ref|ZP_03981195.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
faecium TX1330]
gi|257887737|ref|ZP_05667390.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,141,733]
gi|257896230|ref|ZP_05675883.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com12]
gi|257898868|ref|ZP_05678521.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com15]
gi|293379528|ref|ZP_06625670.1| RNA polymerase sigma factor RpoD [Enterococcus faecium PC4.1]
gi|293570226|ref|ZP_06681295.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E980]
gi|424765155|ref|ZP_18192558.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX1337RF]
gi|425053967|ref|ZP_18457482.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 505]
gi|430840937|ref|ZP_19458858.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1007]
gi|431034734|ref|ZP_19491611.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1590]
gi|431068931|ref|ZP_19494124.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1604]
gi|431102158|ref|ZP_19496769.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1613]
gi|431580904|ref|ZP_19519996.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1861]
gi|431738056|ref|ZP_19527006.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1972]
gi|431740484|ref|ZP_19529399.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2039]
gi|431751483|ref|ZP_19540171.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2620]
gi|431756330|ref|ZP_19544962.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3083]
gi|431761581|ref|ZP_19550143.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3548]
gi|227179708|gb|EEI60680.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
faecium TX1330]
gi|257823791|gb|EEV50723.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,141,733]
gi|257832795|gb|EEV59216.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com12]
gi|257836780|gb|EEV61854.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com15]
gi|291609633|gb|EFF38894.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E980]
gi|292641837|gb|EFF60005.1| RNA polymerase sigma factor RpoD [Enterococcus faecium PC4.1]
gi|402417177|gb|EJV49481.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX1337RF]
gi|403036891|gb|EJY48224.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 505]
gi|430494668|gb|ELA70903.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1007]
gi|430563449|gb|ELB02658.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1590]
gi|430567870|gb|ELB06937.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1604]
gi|430570386|gb|ELB09347.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1613]
gi|430594671|gb|ELB32635.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1861]
gi|430598092|gb|ELB35852.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1972]
gi|430603348|gb|ELB40878.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2039]
gi|430615264|gb|ELB52222.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2620]
gi|430620184|gb|ELB56986.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3083]
gi|430624273|gb|ELB60923.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3548]
Length = 369
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + + + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|266623970|ref|ZP_06116905.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
gi|288864209|gb|EFC96507.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
Length = 345
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 163/251 (64%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +++ G L K+K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 92 DEIELAKKIELGDELAKEKLTEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKF 151
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ +QL E GR P+
Sbjct: 152 DYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRVSRQLLQELGREPS 211
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EEVA + ++R+ ++ + P SL+ IG ++ + I D + D
Sbjct: 212 PEEVASRVDMPVERVREIMKVSQEPVSLETPIGEEEDSHLGDFIQDDQVAVPADAATFTM 271
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+ E L +VLDTL RE++V+R RFGL+DGR +TL+E+G V+RERIRQIE+ A RKL+
Sbjct: 272 LHEQLMEVLDTLTEREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKALRKLR 331
Query: 511 NKKRTKHLMQY 521
+ R+K L Y
Sbjct: 332 HPSRSKKLKDY 342
>gi|333394972|ref|ZP_08476791.1| RNA polymerase sigma factor RpoD, partial [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|420144890|ref|ZP_14652369.1| RNA polymerase sigma factor [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403447|gb|EJN56689.1| RNA polymerase sigma factor [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 371
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 134 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + ++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 254 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 314 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 369
>gi|404330390|ref|ZP_10970838.1| RNA polymerase sigma factor RpoD [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 369
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 132 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYTKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++Q + GR P EE+ + LS +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQELQDLGREPTPEEIGKKMDLSPEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A+ D + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKAPSDAAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|195953901|ref|YP_002122191.1| RpoD family RNA polymerase sigma-70 subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|195933513|gb|ACG58213.1| RNA polymerase, sigma 70 subunit, RpoD family [Hydrogenobaculum sp.
Y04AAS1]
Length = 578
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 164/237 (69%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
KD M+ SN+RLV+SIAK Y G++ DL+QEG GL++ +K+D KGFKFSTYA WWI
Sbjct: 341 KDMMVKSNLRLVVSIAKKYINRGLHFLDLIQEGNMGLMKAVDKYDYKKGFKFSTYATWWI 400
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
KQA+ ++++DQ++TIR+P HM+E ++ + K+L+ E GR P+ EE+A+A +S +++
Sbjct: 401 KQAITRAIADQAKTIRIPVHMIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKVR 460
Query: 407 AVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRE 466
+L S + P SL+ IG +++ + I D E+ ++ ++E +EK+++TL+ +E
Sbjct: 461 KILKSIQEPISLETPIGDDEDTHLKDFIEDSSISNPEEATARRLLREQIEKIINTLSDKE 520
Query: 467 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
R+V+ +RFGL DG TL+++G + ++RERIRQIES A RK+++ R K+L + I
Sbjct: 521 REVIMYRFGLVDGIEHTLEQVGTMFNLTRERIRQIESKAIRKIRHPSRAKYLKDFEI 577
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E +R ++ G T AQ RR L++
Sbjct: 178 LLNAEEEVELAKRIEAGLFSTERMRRIME--SGEKLTVAQ------------RRDLSWIA 223
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 224 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 284 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 343
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VLD
Sbjct: 344 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLD 403
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 404 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 463
Query: 521 Y 521
Y
Sbjct: 464 Y 464
>gi|402832995|ref|ZP_10881618.1| RNA polymerase sigma factor RpoD [Selenomonas sp. CM52]
gi|402281738|gb|EJU30364.1| RNA polymerase sigma factor RpoD [Selenomonas sp. CM52]
Length = 375
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 158/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 145 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITR 204
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL + GR P+ EE+AEA +S++R+ ++
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISVERVREIMKIA 264
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D +A + +KE LE+VLDTL RE +V+R
Sbjct: 265 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTLTEREERVLRL 324
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R++ L +
Sbjct: 325 RFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDF 373
>gi|298246437|ref|ZP_06970243.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297553918|gb|EFH87783.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 422
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 189/316 (59%), Gaps = 26/316 (8%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 265
E DP+R YLR LLTA+EE++L+ + + +ER +P +
Sbjct: 130 ESSLDDPVRMYLREIGRVP-LLTAHEEIRLA---------QLMERGKAERLKPAPNY--- 176
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
R ++ G + ++ +N+RLV+S+AK Y G GMNL DL+QEG GL+R
Sbjct: 177 ------------RYISEGEEAQKRLTEANLRLVVSVAKKYIGRGMNLLDLIQEGNIGLIR 224
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L +
Sbjct: 225 AVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLIRISRRLLQDL 284
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR P +EE+A +S +++ ++ + P SL+ IG + + I D A D
Sbjct: 285 GREPTSEEIAAQMEISAEKVREIIKVSQEPVSLETPIGEEDDSHLGDFIEDHTALAPADA 344
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+ +KE +E VLD+L RER+V++ RFGL+DGR +TL+E+G+ V+RERIRQIE+ A
Sbjct: 345 ASHQLLKEQVEDVLDSLTERERKVLQLRFGLDDGRSRTLEEVGKEFHVTRERIRQIEAKA 404
Query: 506 FRKLKNKKRTKHLMQY 521
RKL++ R++ L Y
Sbjct: 405 LRKLRHPSRSRKLKDY 420
>gi|40143|emb|CAA27538.1| unnamed protein product [Bacillus subtilis]
gi|143454|gb|AAA22709.1| RNA polymerase sigma-43 factor [Bacillus subtilis]
gi|1303833|dbj|BAA12489.1| RpoD [Bacillus subtilis]
Length = 371
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+ EG GL++ EKFD KG+KFSTYA WW
Sbjct: 134 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIHEGNMGLMKAVEKFDYRKGYKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ +++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 254 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 314 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 369
>gi|339627021|ref|YP_004718664.1| RpoD subfamily RNA polymerase sigma-70 factor [Sulfobacillus
acidophilus TPY]
gi|379008595|ref|YP_005258046.1| RNA polymerase sigma-70 subunit RpoD [Sulfobacillus acidophilus DSM
10332]
gi|339284810|gb|AEJ38921.1| RNA polymerase, sigma 70 subunit, RpoD family [Sulfobacillus
acidophilus TPY]
gi|361054857|gb|AEW06374.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfobacillus acidophilus
DSM 10332]
Length = 369
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 161/236 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 132 AKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE+A+ G++++R+
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQEYGREPLPEEIAKEMGITVERV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG ++ + I D +A + + +KE LE+VLDTL R
Sbjct: 252 REILKVAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPAEAAGYQLLKEQLEEVLDTLTNR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 312 EEKVLRLRFGLTDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPTRSKKLKDY 367
>gi|332686632|ref|YP_004456406.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius ATCC
35311]
gi|379727357|ref|YP_005319542.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius DAT561]
gi|332370641|dbj|BAK21597.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius ATCC
35311]
gi|376318260|dbj|BAL62047.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius DAT561]
Length = 369
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 178/314 (56%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+ +DP+R +LLTA EE++L+ I+ EG +E
Sbjct: 94 IKINDPVRMYLKEIGRVQLLTAEEEVELALKIE-----EGDQE----------------- 131
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 132 ------------------AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAV 173
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 174 EKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGR 233
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ L +++ +L + P SL+ IG + + I D EA + +
Sbjct: 234 EPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAA 293
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 294 YELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 353
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 354 KLRHPSRSKQLKDF 367
>gi|295397565|ref|ZP_06807644.1| RNA polymerase sigma factor rpoD [Aerococcus viridans ATCC 11563]
gi|294974189|gb|EFG49937.1| RNA polymerase sigma factor rpoD [Aerococcus viridans ATCC 11563]
Length = 374
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 176/315 (55%), Gaps = 40/315 (12%)
Query: 207 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
+V +DP+R LLTA+EE+ L+ I+ G P Q
Sbjct: 98 DVKINDPVRMYLKEIGRVELLTADEEVSLAQRIEQ----------------GDPVAKQEL 141
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
A A N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 142 AEA------------------------NLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 177
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 178 VEKFDYHKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQDLG 237
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P EE+ L +++ +L + P SL+ IG + + I D +A + +D
Sbjct: 238 REPTPEEIGAEMDLPTEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPDDYT 297
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
+ +KE L +VLDTL RE V+R RFGLEDG+ KTL+++G+ GV+RERIRQIE+ A
Sbjct: 298 SAELLKEQLNEVLDTLTDREENVLRLRFGLEDGQSKTLEQVGQQFGVTRERIRQIEAKAL 357
Query: 507 RKLKNKKRTKHLMQY 521
RKL++ R+K L +
Sbjct: 358 RKLRHPSRSKQLKDF 372
>gi|769798|emb|CAA60113.1| sigma 42 [Enterococcus faecalis]
Length = 368
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 187/342 (54%), Gaps = 52/342 (15%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
+ AEKA A +S +G V +DP+R +LLTA EE++L+ I
Sbjct: 77 KEAEKAQAEDLSAPTG------------VKINDPVRMYLKEIGRVQLLTAAEEVELALKI 124
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
+ EG +E K ++ +N+RLV+
Sbjct: 125 E-----EGDQE-----------------------------------AKQRLAEANLRLVV 144
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+R
Sbjct: 145 SIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQAR 204
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIR+P HMVE ++ ++ L + GR P EE+ L +++ +L + P SL+
Sbjct: 205 TIRIPVHMVETINKLIRMQRNLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLE 264
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
IG + + I D +A + + + +KE LE VLDTL RE V+R RFGL+DG
Sbjct: 265 TPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDG 324
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 325 RTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP-TFAQWAAAAGVDQRELRRRLNYGI 284
LLT EE+ + IQ ++ L +++ L+E G P + ++WA AA + REL + + G
Sbjct: 22 LLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIKEGE 81
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+W
Sbjct: 82 RAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYW 141
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++++SRTIRLP H+ E ++K+A++QL E GR + E+AE L+ K+
Sbjct: 142 WIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELTPKQ 201
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ L + P SLD ++G NQ+ + +++ D + ED ++ DL+ ++ L P
Sbjct: 202 VREYLERSRHPLSLDLRVGDNQDTELGDLLED-DGPLPEDFATYASLQLDLDSLMAELTP 260
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++R+V+ RFGL DG+ TL IG ++ +SRER+RQIE A KL+ +K
Sbjct: 261 QQREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIEREALNKLRKRK 309
>gi|365157895|ref|ZP_09354140.1| RNA polymerase sigma factor rpoD [Bacillus smithii 7_3_47FAA]
gi|363622565|gb|EHL73724.1| RNA polymerase sigma factor rpoD [Bacillus smithii 7_3_47FAA]
Length = 377
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 128 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYR 187
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 188 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE 247
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ E LS +++ +L + P SL+ IG + + I D EA + + + +KE
Sbjct: 248 IGEEMDLSPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHEATSPSEHAAYELLKE 307
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 308 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 367
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 368 RSKRLKDF 375
>gi|386714844|ref|YP_006181167.1| RNA polymerase sigma factor SigA [Halobacillus halophilus DSM 2266]
gi|384074400|emb|CCG45893.1| RNA polymerase sigma factor SigA [Halobacillus halophilus DSM 2266]
Length = 382
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K + +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 145 AKRDLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 204
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+A+ L+ ++
Sbjct: 205 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAQDMELTPDKV 264
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 265 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDR 324
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 325 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 380
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 183/292 (62%), Gaps = 1/292 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + +RE L+ PT A+WAAAA + + EL + G
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 80 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 139
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A L+ ++
Sbjct: 140 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTPAQV 199
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + E+ + ++ DLE+++ L P+
Sbjct: 200 REYLERARQPLSLDVRVGDNQDTELGELLEDSSI-SPEEFATQSLLRSDLERLMAELTPQ 258
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517
+R V+ RFGLE+G+ TL ++GEL+ +SRER+RQIE A KL+ ++ H
Sbjct: 259 QRHVLSLRFGLENGQPLTLAKVGELLNISRERVRQIEREALSKLRKRRGDIH 310
>gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
Length = 413
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/296 (41%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P AQ +R++ G
Sbjct: 125 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPA-AQ--------RRDMMWICRDGDR 175
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 176 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 235
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 236 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 295
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 296 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 355
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 356 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 411
>gi|292670108|ref|ZP_06603534.1| DNA-directed RNA polymerase sigma subunit RpoD [Selenomonas noxia
ATCC 43541]
gi|422343576|ref|ZP_16424504.1| RNA polymerase sigma factor rpoD [Selenomonas noxia F0398]
gi|292648296|gb|EFF66268.1| DNA-directed RNA polymerase sigma subunit RpoD [Selenomonas noxia
ATCC 43541]
gi|355378883|gb|EHG26063.1| RNA polymerase sigma factor rpoD [Selenomonas noxia F0398]
Length = 370
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 140 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 199
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL E GR P+ EEVA G+S+ R+H ++
Sbjct: 200 AIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPHPEEVAREMGISVARVHEIMKIA 259
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 260 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 319
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 368
>gi|254556820|ref|YP_003063237.1| RNA polymerase sigma factor RpoD [Lactobacillus plantarum JDM1]
gi|254045747|gb|ACT62540.1| RNA polymerase sigma factor RpoD [Lactobacillus plantarum JDM1]
Length = 368
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 131 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTNR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|89100479|ref|ZP_01173341.1| RNA polymerase sigma factor [Bacillus sp. NRRL B-14911]
gi|89084822|gb|EAR63961.1| RNA polymerase sigma factor [Bacillus sp. NRRL B-14911]
Length = 374
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+AE L+ ++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPDKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 257 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|172056869|ref|YP_001813329.1| RpoD family RNA polymerase sigma factor [Exiguobacterium sibiricum
255-15]
gi|407476679|ref|YP_006790556.1| RNA polymerase sigma factor rpoD [Exiguobacterium antarcticum B7]
gi|171989390|gb|ACB60312.1| RNA polymerase, sigma 70 subunit, RpoD family [Exiguobacterium
sibiricum 255-15]
gi|407060758|gb|AFS69948.1| RNA polymerase sigma factor rpoD [Exiguobacterium antarcticum B7]
Length = 361
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 124 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYTKGYKFSTYATWW 183
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+++ ++ +++
Sbjct: 184 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEISKEMEITPEKV 243
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A +D + +KE LE VLDTL R
Sbjct: 244 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVLDTLTDR 303
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 304 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 359
>gi|343924623|ref|ZP_08764167.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|404258486|ref|ZP_10961805.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
gi|409390116|ref|ZP_11241887.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|343765423|dbj|GAA11093.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|403199943|dbj|GAB85121.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|403403000|dbj|GAC00215.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
Length = 338
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 164/250 (65%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 88 KRDLATIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 147
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +E
Sbjct: 148 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDE 207
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I +
Sbjct: 208 ELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLH 267
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG + G+SRER+RQIE KL+
Sbjct: 268 SDIRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRAG 327
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 328 DRAERLRAYA 337
>gi|241896072|ref|ZP_04783368.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella
paramesenteroides ATCC 33313]
gi|241870672|gb|EER74423.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella
paramesenteroides ATCC 33313]
Length = 378
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 141 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 200
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ ++ +++
Sbjct: 201 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRNLLQDLGREPTPEEIGAEMDVATEKV 260
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 261 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVLDTLTDR 320
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 321 EENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDF 376
>gi|261405623|ref|YP_003241864.1| RpoD subfamily RNA polymerase sigma-70 factor [Paenibacillus sp.
Y412MC10]
gi|329925852|ref|ZP_08280581.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF5]
gi|261282086|gb|ACX64057.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus sp.
Y412MC10]
gi|328939598|gb|EGG35946.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF5]
Length = 377
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEIELANRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+
Sbjct: 185 DYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPS 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A LS++++ ++ + P SL+ IG + + I D EA D +
Sbjct: 245 PEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 304
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 305 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 365 HPSRSKRLKDF 375
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 183/302 (60%), Gaps = 8/302 (2%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LLTA EE LS +Q L+ +E + ++R G T +WAA G R+ + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ +M+ SN RLV +A+ Y G++ QDL+ EG GL RG EKFDA +GFKFSTYAHW
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLLAEGMSGLWRGVEKFDADRGFKFSTYAHW 128
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
W++QA+ +++S+Q R +RLP H+ E +V + + SE+GR NE++AE G+S ++
Sbjct: 129 WVRQAITRAISEQGRVVRLPVHLHELMAKVTKVDLEYQSEHGRRAGNEKLAELVGISQEK 188
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKP-----SEVIADPEAETAEDLLIKKFMKEDLEKVL 459
L + AP S + +G ++ P E IAD + E++ ++ + +D++ VL
Sbjct: 189 LAMLSKVYMAPTSFNAPVG--GSMDPGADTVGETIADDNEASPEEVAVRLNLHQDMDNVL 246
Query: 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLM 519
TL+ RE ++R R+GL+DGR +TL+E+G++ V+RERIRQIE+ A KL+ R+ L
Sbjct: 247 ATLSERESGILRCRYGLDDGRQRTLEEVGQIFKVTRERIRQIEAKAILKLRQPDRSSILY 306
Query: 520 QY 521
Y
Sbjct: 307 DY 308
>gi|410456772|ref|ZP_11310628.1| RNA polymerase sigma factor RpoD [Bacillus bataviensis LMG 21833]
gi|409927529|gb|EKN64662.1| RNA polymerase sigma factor RpoD [Bacillus bataviensis LMG 21833]
Length = 377
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ E L+ ++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEDMDLTPDKV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 260 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 375
>gi|433449559|ref|ZP_20412423.1| RNA polymerase sigma factor RpoD [Weissella ceti NC36]
gi|429539073|gb|ELA07111.1| RNA polymerase sigma factor RpoD [Weissella ceti NC36]
Length = 377
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 155/237 (65%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
L K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA W
Sbjct: 139 LAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATW 198
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ + ++
Sbjct: 199 WIRQAITRAIADQARTIRIPVHMVETINKLIRIQRNLLQDLGREPTPEEIGAEMDIPTEK 258
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ +L + P SL+ IG + + I D EA + D + +K LE VLDTL P
Sbjct: 259 VRDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAYEMLKVQLESVLDTLTP 318
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE QV+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 319 REEQVLRLRFGLDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKQLRDF 375
>gi|194467797|ref|ZP_03073783.1| RNA polymerase, sigma 70 subunit, RpoD family [Lactobacillus
reuteri 100-23]
gi|194452650|gb|EDX41548.1| RNA polymerase, sigma 70 subunit, RpoD family [Lactobacillus
reuteri 100-23]
Length = 380
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 49/345 (14%)
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
R +A EK + + M S T V +DP+R LLTA+EE+QL+
Sbjct: 83 RALKATEKLSQSAMKDTSAPTG---------VKINDPVRMYLKEIGRVNLLTADEEVQLA 133
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
L++E EV K ++ +N+R
Sbjct: 134 ------LRIEKGDEV----------------------------------AKQELAEANLR 153
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA WWI+QA+ ++++D
Sbjct: 154 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWWIRQAITRAIAD 213
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
Q+RTIR+P HMVE ++ ++QL + GR P EE+ + +++ +L + P
Sbjct: 214 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPV 273
Query: 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476
SL+ IG + + I D +A + D + MK+ LE VLDTL RE V+R RFGL
Sbjct: 274 SLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGL 333
Query: 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 334 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|429205294|ref|ZP_19196571.1| RNA polymerase sigma factor RpoD [Lactobacillus saerimneri 30a]
gi|428146366|gb|EKW98605.1| RNA polymerase sigma factor RpoD [Lactobacillus saerimneri 30a]
Length = 371
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 135 AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPVPEEIGAEMNMPTEKV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 255 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLENVLDTLTDR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 315 EENVLRLRFGLDDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 370
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 182/297 (61%), Gaps = 11/297 (3%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E LR + SP +R+LR + G
Sbjct: 173 LLNAEEEVELAKRIEAGLYAAERLRRAIESGEKVSPQL----------RRDLRWIVRDGE 222
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 223 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 282
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 283 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 342
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLDQ IG + + + I D EA A D + +++ L+ VL TL+
Sbjct: 343 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSE 402
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 403 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 459
>gi|183982025|ref|YP_001850316.1| RNA polymerase sigma factor [Mycobacterium marinum M]
gi|183175351|gb|ACC40461.1| RNA polymerase sigma factor SigA [Mycobacterium marinum M]
Length = 501
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L L++R P +R++ G
Sbjct: 213 LLNAEEEVELAKRIEAGLYATQLMAELTDRGEKLP---------AAQRRDMMWICRDGDR 263
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 264 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 323
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 324 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 383
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 384 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 443
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 444 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 499
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LLT +E+ +Q L L+ +RE L G PT +WA A+ + D EL + + G
Sbjct: 23 LLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIAAGE 82
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
L K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+W
Sbjct: 83 LAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYW 142
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR P E+A L+ K+
Sbjct: 143 WIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELATELELTTKQ 202
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ L + P SLD ++G NQ+ + E++ D A + E+ +++ + DL+ ++ L P
Sbjct: 203 VREYLERARLPLSLDLRVGDNQDTELGELLEDTGA-SPEEFVMQSSLATDLDLLMADLTP 261
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++R+V+ RFGL DG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QQREVLILRFGLSDGQALTLAKIGDRLNISRERVRQIEREALTKLRKRK 310
>gi|311739612|ref|ZP_07713447.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305428|gb|EFQ81496.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 337
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 160/252 (63%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 86 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 205
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE++E +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 206 EELSEESGIDENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMR 265
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
D+ V+DTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 266 HSDIRGVIDTLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRD 325
Query: 512 KKRTKHLMQYAI 523
R L +YA+
Sbjct: 326 GNRADRLREYAL 337
>gi|406670723|ref|ZP_11077968.1| RNA polymerase sigma factor rpoD [Facklamia hominis CCUG 36813]
gi|405582239|gb|EKB56245.1| RNA polymerase sigma factor rpoD [Facklamia hominis CCUG 36813]
Length = 385
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
E+ +R+ G + K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD +
Sbjct: 136 EIAKRIEAGDEIAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYT 195
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 196 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQDLGREPTPEE 255
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ L +++ +L + P SL+ IG + + I D A + E+ ++E
Sbjct: 256 IGAEMDLPTEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDDGALSPEEFTASSLLRE 315
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DG ++TL+++G++ GV+RERIRQIE+ A RKL++
Sbjct: 316 QLEDVLDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKALRKLRHPS 375
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 376 RSKQLKDF 383
>gi|377561650|ref|ZP_09791093.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
gi|377521212|dbj|GAB36258.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
Length = 486
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 198 LLNAEEEVELAKRIEAGLYATERLRRIME--SGEKLSTAQ------------KRDLNWIS 243
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 244 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 303
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 304 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 363
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+
Sbjct: 364 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 423
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 424 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 483
Query: 521 Y 521
Y
Sbjct: 484 Y 484
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 190/300 (63%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+ + G P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELAQQLGRSATPGEIAQALDLEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + S+++ D E + ++ + ++ +++DL ++ L P+
Sbjct: 212 REYLSMARQPVSLDVRVGDNQDTELSDLLED-EGISPDNYITQELLRQDLNNLMAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGLEDG+ +L +IG+ + +SRER+RQ+E A +L ++R ++ +Y + S
Sbjct: 271 QREVLSLRFGLEDGKELSLAKIGQRLNISRERVRQLEHQALAQL--RRRRSNVREYIVAS 328
>gi|81428494|ref|YP_395494.1| RNA polymerase sigma factor RpoD [Lactobacillus sakei subsp. sakei
23K]
gi|78610136|emb|CAI55185.1| DNA-directed RNA polymerase sigma factor, sigma A (Primary sigma
factor) [Lactobacillus sakei subsp. sakei 23K]
Length = 369
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ ++ ++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNTDKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + E+ + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 201/347 (57%), Gaps = 20/347 (5%)
Query: 181 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 120 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 179
Query: 240 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 294
+ L E +RE FA+ V +RR N+ G K+ ++ +N
Sbjct: 180 EAGLFAAEKMRE-----------FAEQGEKLPV---AVRRDFNWIIRDGNRAKNHLLEAN 225
Query: 295 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 354
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 226 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 285
Query: 355 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414
+DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + +
Sbjct: 286 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 345
Query: 415 PRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRF 474
P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE VVR RF
Sbjct: 346 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRF 405
Query: 475 GLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 406 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 452
>gi|453382635|dbj|GAC82930.1| RNA polymerase sigma factor SigB [Gordonia paraffinivorans NBRC
108238]
Length = 340
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 166/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 90 KRDLQIIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 149
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +E
Sbjct: 150 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDE 209
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I +
Sbjct: 210 ELANESGIPAEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAENAVIAGLLH 269
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG + G+SRER+RQIE KL+
Sbjct: 270 SDIRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRAG 329
Query: 513 KRTKHLMQYA 522
+R + L YA
Sbjct: 330 ERAERLRAYA 339
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 181/301 (60%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE+ L+ I+ L E LR+ E SP ++RR LN+
Sbjct: 141 LLNAEEEVDLAKRIEAGLYGAERLRQAEEEGQKLSP--------------QMRRDLNWIV 186
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 187 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 246
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 247 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 306
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ ++ + + P SLDQ IG + + + I D EA A D + M++ L VL
Sbjct: 307 TPDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQ 366
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 367 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 426
Query: 521 Y 521
Y
Sbjct: 427 Y 427
>gi|227544906|ref|ZP_03974955.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri CF48-3A]
gi|338204350|ref|YP_004650495.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri SD2112]
gi|227185118|gb|EEI65189.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri CF48-3A]
gi|336449590|gb|AEI58205.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri SD2112]
Length = 380
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 49/345 (14%)
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
R +A EK + + M S T V +DP+R LLTA+EE+QL+
Sbjct: 83 RALKATEKFSQSAMKDTSAPTG---------VKINDPVRMYLKEIGRVNLLTADEEVQLA 133
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
L++E EV K ++ +N+R
Sbjct: 134 ------LRIEKGDEV----------------------------------AKQELAEANLR 153
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA WWI+QA+ ++++D
Sbjct: 154 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWWIRQAITRAIAD 213
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
Q+RTIR+P HMVE ++ ++QL + GR P EE+ + +++ +L + P
Sbjct: 214 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPV 273
Query: 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476
SL+ IG + + I D +A + D + MK+ LE VLDTL RE V+R RFGL
Sbjct: 274 SLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGL 333
Query: 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 334 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|354807988|ref|ZP_09041435.1| RNA polymerase sigma factor rpoD [Lactobacillus curvatus CRL 705]
gi|354513521|gb|EHE85521.1| RNA polymerase sigma factor rpoD [Lactobacillus curvatus CRL 705]
Length = 369
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ ++ ++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNTDKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + E+ + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|255325135|ref|ZP_05366241.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
gi|255297700|gb|EET77011.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
Length = 365
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 160/252 (63%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 114 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 173
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 174 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 233
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE++E +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 234 EELSEESGIDENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMR 293
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
D+ V+DTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 294 HSDIRGVIDTLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRD 353
Query: 512 KKRTKHLMQYAI 523
R L +YA+
Sbjct: 354 GNRADRLREYAL 365
>gi|148543974|ref|YP_001271344.1| RNA polymerase sigma factor RpoD [Lactobacillus reuteri DSM 20016]
gi|184153369|ref|YP_001841710.1| RNA polymerase sigma factor RpoD [Lactobacillus reuteri JCM 1112]
gi|227364887|ref|ZP_03848933.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM2-3]
gi|325682488|ref|ZP_08162005.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM4-1A]
gi|148531008|gb|ABQ83007.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus reuteri DSM
20016]
gi|183224713|dbj|BAG25230.1| RNA polymerase sigma-43 factor RpoD [Lactobacillus reuteri JCM
1112]
gi|227070091|gb|EEI08468.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM2-3]
gi|324978327|gb|EGC15277.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM4-1A]
Length = 380
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 49/345 (14%)
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
R +A EK + + M S T V +DP+R LLTA+EE+QL+
Sbjct: 83 RALKATEKFSQSAMKDTSAPTG---------VKINDPVRMYLKEIGRVNLLTADEEVQLA 133
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
L++E EV K ++ +N+R
Sbjct: 134 ------LRIEKGDEV----------------------------------AKQELAEANLR 153
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA WWI+QA+ ++++D
Sbjct: 154 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWWIRQAITRAIAD 213
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
Q+RTIR+P HMVE ++ ++QL + GR P EE+ + +++ +L + P
Sbjct: 214 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPV 273
Query: 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476
SL+ IG + + I D +A + D + MK+ LE VLDTL RE V+R RFGL
Sbjct: 274 SLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGL 333
Query: 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 334 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|443490424|ref|YP_007368571.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
gi|442582921|gb|AGC62064.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
Length = 509
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L L++R P +R++ G
Sbjct: 221 LLNAEEEVELAKRIEAGLYATQLMAELTDRGEKLP---------AAQRRDMMWICRDGDR 271
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 272 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 331
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 332 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 391
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 392 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 451
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 452 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 507
>gi|452944684|ref|YP_007500849.1| RNA polymerase, sigma 70 subunit, RpoD [Hydrogenobaculum sp. HO]
gi|452883102|gb|AGG15806.1| RNA polymerase, sigma 70 subunit, RpoD [Hydrogenobaculum sp. HO]
Length = 578
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 164/238 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD M+ SN+RLV+SIAK Y G++ DL+QEG GL++ +K+D KGFKFSTYA WW
Sbjct: 340 SKDIMVKSNLRLVVSIAKKYINRGLHFLDLIQEGNMGLMKAVDKYDYKKGFKFSTYATWW 399
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
IKQA+ ++++DQ++TIR+P HM+E ++ + K+L+ E GR P+ EE+A+A +S +++
Sbjct: 400 IKQAITRAIADQAKTIRIPVHMIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKV 459
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L S + P SL+ IG +++ + I D E+ ++ ++E +EK+++TL+ +
Sbjct: 460 RKILKSIQEPISLETPIGDDEDTHLKDFIEDSSISNPEEATARRLLREQIEKIINTLSDK 519
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
ER+V+ +RFGL DG TL+++G + ++RERIRQIES A RK+++ R K+L + I
Sbjct: 520 EREVIMYRFGLVDGIEHTLEQVGAMFNLTRERIRQIESKAIRKIRHPSRAKYLKDFEI 577
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 185/305 (60%), Gaps = 1/305 (0%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D +D +R LLT +E+ +Q ++ +E L ++ PT +WA A
Sbjct: 22 DSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEA 81
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G +L+ + G K KMI +N+RLV++IAK YQ + DL+QEG GL RG E
Sbjct: 82 VGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVE 141
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +G+KFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR
Sbjct: 142 KFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQNLGRS 201
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P+ E+ EA L ++ LL + P SLD ++G NQ+ + +++ D +A + E+ + +
Sbjct: 202 PSPSEIGEALELEPAQIREYLLMARQPVSLDLRVGDNQDTELQDLLEDADA-SPENYITQ 260
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++EDLE +L L ++R V+ RFGL+DGR +L ++GE + +SRER+RQ+E A
Sbjct: 261 ELLREDLESLLAELTTQQRDVIILRFGLKDGRELSLAKVGEKLSLSRERVRQLEHQALAH 320
Query: 509 LKNKK 513
L+ ++
Sbjct: 321 LRRRR 325
>gi|406965492|gb|EKD91117.1| hypothetical protein ACD_30C00043G0003 [uncultured bacterium]
Length = 364
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 168/248 (67%), Gaps = 2/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL + + GI K ++I++N+RLV+SIAK Y G GM+L DL++EG GL+R EK+D
Sbjct: 116 ELAKNVEKGIQRAKHQLISANLRLVVSIAKKYVGRGMSLLDLIEEGNIGLMRAVEKYDWR 175
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R +++L E GR P EE
Sbjct: 176 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRFNRTQRRLMQELGREPTPEE 235
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
VAEA G+ + ++ + P SL +G + + + I P + E ++ +K+
Sbjct: 236 VAEALGIDPSKAREIVKVSQEPTSLATPVGDEDDSQLGDFIEAPGLKPDEQ-ATRELLKD 294
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L++VL+TL+PRE++V++ RFGLEDG+ +TL+E+G+ GV+RERIRQIE+ A RKLK+
Sbjct: 295 HLDEVLNTLSPREKRVLQLRFGLEDGKQRTLEEVGKEFGVTRERIRQIEAKAVRKLKHPT 354
Query: 514 RTKHLMQY 521
R K L Y
Sbjct: 355 RAKKLRDY 362
>gi|226311661|ref|YP_002771555.1| RNA polymerase sigma factor [Brevibacillus brevis NBRC 100599]
gi|226094609|dbj|BAH43051.1| RNA polymerase sigma factor [Brevibacillus brevis NBRC 100599]
Length = 376
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 139 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 198
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE L+ +++
Sbjct: 199 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTPEKV 258
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D +A D + +KE LE VLDTL R
Sbjct: 259 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTLTDR 318
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 319 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 374
>gi|410659170|ref|YP_006911541.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. DCA]
gi|410662155|ref|YP_006914526.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. CF]
gi|409021525|gb|AFV03556.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. DCA]
gi|409024511|gb|AFV06541.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. CF]
Length = 386
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL ++ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 134 DEIELALKMEAGDEMAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKF 193
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 194 DYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLLQELGRDPT 253
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+E A+ + +R+ +L + P SL+ IG ++ + I D +A +
Sbjct: 254 PDETAKVMEIPEERVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFIL 313
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE+VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL+
Sbjct: 314 LKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLR 373
Query: 511 NKKRTKHLMQY 521
+ R+K L Y
Sbjct: 374 HPSRSKKLKDY 384
>gi|430750557|ref|YP_007213465.1| sigma-70 family RNA polymerase sigma factor [Thermobacillus
composti KWC4]
gi|430734522|gb|AGA58467.1| RNA polymerase sigma factor, sigma-70 family [Thermobacillus
composti KWC4]
Length = 374
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 125 ELAKRIEQGDEDAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHG 184
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 185 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEE 244
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A LS+ ++ ++ + P SL+ IG + + I D EA D + +KE
Sbjct: 245 IAAEMDLSVDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKE 304
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 305 QLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 364
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 365 RSKRLKDF 372
>gi|408356485|ref|YP_006845016.1| RNA polymerase sigma factor SigA [Amphibacillus xylanus NBRC 15112]
gi|407727256|dbj|BAM47254.1| RNA polymerase sigma factor SigA [Amphibacillus xylanus NBRC 15112]
Length = 372
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 135 AKMQLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + L+ +++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGKEMDLTPEKV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D E + D + +KE LE VLDTL R
Sbjct: 255 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVTSPSDHAAYELLKEQLEDVLDTLTDR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 315 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 370
>gi|366053198|ref|ZP_09450920.1| RNA polymerase sigma factor RpoD [Lactobacillus suebicus KCTC 3549]
Length = 381
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 144 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 203
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 204 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 263
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 264 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLENVLDTLTDR 323
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 324 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 379
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 186/317 (58%), Gaps = 21/317 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQWA 266
SDP+R RLLTA EE+ L+ I+ L KL +R SP
Sbjct: 101 SDPVRMYLKAIGRVRLLTAEEEVDLAKRIEAGLFASEKLAAIRRT-------SPRL---- 149
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
+R+L G + K K++ +N+RLV+SIAK Y G GM L DL+QEG GL+R
Sbjct: 150 ------RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRA 203
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QAV ++++DQ RTIR+P HMVE +V ++QL + G
Sbjct: 204 VEKFDYTKGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMVETINKVTRIQRQLLQDLG 263
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+A L+ R+ +L + P +L+ IG Q+ + + I D +A +
Sbjct: 264 REPSPEEIATQVDLAPHRVEEILKVGQTPVALETPIGEEQDSQLGDFIEDNDAIVPFEAA 323
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E ++ VL TL+ RE++V++ RFGL DG+ +TL+++G GV+RERIRQIES
Sbjct: 324 SFVLLQEQIDSVLHTLSEREKKVIQLRFGLTDGQPRTLEQVGREFGVTRERIRQIESRTL 383
Query: 507 RKLKNKKRTKHLMQYAI 523
KL + R++ L Y +
Sbjct: 384 AKLSHPARSQRLRDYLV 400
>gi|118618666|ref|YP_906998.1| RNA polymerase sigma factor [Mycobacterium ulcerans Agy99]
gi|118570776|gb|ABL05527.1| RNA polymerase sigma factor SigA [Mycobacterium ulcerans Agy99]
Length = 501
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L L++R P +R++ G
Sbjct: 213 LLNAEEEVELAKRIEAGLYATQLMAELTDRGEKLP---------AAQRRDMMWICRDGDR 263
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 264 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 323
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 324 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 383
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 384 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 443
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 444 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 499
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 125/297 (42%), Positives = 182/297 (61%), Gaps = 11/297 (3%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E LR V E G Q +R+L+ + G
Sbjct: 226 LLNAEEEVELAKRIEAGLYAAERLRVVEEE---GEKLSTQM-------RRDLKWIVRDGE 275
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA W
Sbjct: 276 RAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATW 335
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +S ++
Sbjct: 336 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEK 395
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLDQ IG + + + I D EA A D + +++ L+ VL TL+
Sbjct: 396 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSE 455
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 456 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 512
>gi|441513649|ref|ZP_20995477.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
gi|441451595|dbj|GAC53438.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
Length = 338
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 164/250 (65%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 88 KRDLATIVREGEAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 147
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR ++
Sbjct: 148 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDD 207
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I +
Sbjct: 208 ELASESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLH 267
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG + G+SRER+RQIE KL+
Sbjct: 268 SDIRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRAG 327
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 328 DRAERLRAYA 337
>gi|398817952|ref|ZP_10576551.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
BC25]
gi|398028750|gb|EJL22253.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
BC25]
Length = 376
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 139 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 198
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE L+ +++
Sbjct: 199 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTPEKV 258
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D +A D + +KE LE VLDTL R
Sbjct: 259 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTLTDR 318
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 319 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 374
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ GL +E+ GG + A
Sbjct: 94 SDPVRMYLKEIGKVPLLTAAEEVDLAKRIE-----AGL--FAAEKLGGG---RRLTVALR 143
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
VD + R G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKF
Sbjct: 144 VDLEAVARD---GDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 200
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P
Sbjct: 201 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPL 260
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ L+ ++ +L + P SL+ IG ++ + I D +A D
Sbjct: 261 PEEIAKEMDLTPDKVREILKVAQEPVSLETPIGEEEDSHLGDFIEDSDAVVPVDAASFLL 320
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E L+ VL TL+ RE++V++ RFGL DG +TL+E+G GV+RERIRQIES KL+
Sbjct: 321 LQEQLDSVLHTLSDREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTLSKLR 380
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 381 HPSRSQKLRDY 391
>gi|404214757|ref|YP_006668952.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645556|gb|AFR48796.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 474
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 186 LLNAEEEVELAKRIEAGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWIS 231
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 232 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 291
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 292 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 351
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+
Sbjct: 352 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 411
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 412 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 471
Query: 521 Y 521
Y
Sbjct: 472 Y 472
>gi|383754709|ref|YP_005433612.1| putative RNA polymerase sigma factor RpoD [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381366761|dbj|BAL83589.1| putative RNA polymerase sigma factor RpoD [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 380
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 167/247 (67%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G + + ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 132 LAKRMQEGDEIAQKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTK 191
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
G+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR P+ EE+
Sbjct: 192 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEI 251
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
A+ +S++R+ ++ + P SL+ IG ++ + I D +A D +KE
Sbjct: 252 AKEMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQ 311
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE+VLDTL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R
Sbjct: 312 LEEVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQSFGVTRERIRQIEAKALRKLRHPSR 371
Query: 515 TKHLMQY 521
++ L +
Sbjct: 372 SRKLKDF 378
>gi|225174152|ref|ZP_03728151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiobacter
alkaliphilus AHT 1]
gi|225169937|gb|EEG78732.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiobacter
alkaliphilus AHT 1]
Length = 372
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 135 AKRRLAEANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P +E+A +S +R+
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLVQELGREPAPDEIAHVMNISEERV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D + + + + +KE L+ VL+TL PR
Sbjct: 255 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELLKEQLDDVLETLTPR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E++V+ RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 315 EKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSKRLKDY 370
>gi|383831189|ref|ZP_09986278.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463842|gb|EID55932.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 343
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 183/317 (57%), Gaps = 23/317 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA+EE+ L+ I+ + FAQ
Sbjct: 44 ADLVRVYLNGIGKTALLTADEEVDLAKRIE------------------AGVFAQHMLDTS 85
Query: 271 VD-QRELRRRL----NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D RE R L G K ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 86 DDLPRERRAELAAVVRDGERAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 145
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+
Sbjct: 146 AVEKFDYAKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRL 205
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR NEE+A +G+ ++ ++L + P SLD +G ++ + I D EA AE
Sbjct: 206 GREATNEELAAESGIPETKVASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAEST 265
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+I +++DL +VL TL+ RE+QV+R R+GL+DG+ +TL +IG+ +SRER+RQIE
Sbjct: 266 VISTLLQDDLRRVLATLDDREQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREV 325
Query: 506 FRKLKNKKRTKHLMQYA 522
KL++ +R L YA
Sbjct: 326 MSKLRHGERADRLRAYA 342
>gi|1519632|gb|AAC44890.1| sigma 70-type sigma factor SigA [Heliobacillus mobilis]
Length = 333
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 158/237 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 96 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 155
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR PN EE+A+ + + R+
Sbjct: 156 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEFGREPNPEEIAKEMDIPVDRV 215
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE LE+VL+TL R
Sbjct: 216 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVLETLTAR 275
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
E +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 276 EMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYV 332
>gi|326803636|ref|YP_004321454.1| RNA polymerase sigma factor RpoD [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651510|gb|AEA01693.1| RNA polymerase sigma factor RpoD [Aerococcus urinae
ACS-120-V-Col10a]
Length = 401
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 175/314 (55%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA+EE+ L+ I+ G P Q A
Sbjct: 125 VKTNDPVRMYLKEIGRVDLLTADEEVALAKRIE----------------AGDPVAKQELA 168
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 169 EA------------------------NLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAV 204
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA WWI+QA+ +S++DQ+RTIR+P HMVE ++ ++QL E GR
Sbjct: 205 EKFDYTKGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKLVRIQRQLLQELGR 264
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ L +++ ++ + P SL+ IG + + I D +A ++
Sbjct: 265 EPTPEEIGAEMDLPTEKVRNIMKISQEPVSLETPIGEEDDSHLGDFIEDNDAMQPDEYTN 324
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
++ +KE L +VLDTL RE V+R RFGLEDG+ KTL+++G+ GV+RERIRQIE+ A R
Sbjct: 325 QELLKEQLNEVLDTLTDREENVLRLRFGLEDGQTKTLEQVGQQFGVTRERIRQIEAKALR 384
Query: 508 KLKNKKRTKHLMQY 521
KL++ R K L +
Sbjct: 385 KLRHPSRLKQLKDF 398
>gi|404214750|ref|YP_006668945.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645549|gb|AFR48789.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 338
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 88 KRDLAVVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 147
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR ++
Sbjct: 148 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDD 207
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I +
Sbjct: 208 ELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLH 267
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG + G+SRER+RQIE KL++
Sbjct: 268 SDIRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRHG 327
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 328 DRAERLRAYA 337
>gi|254232809|ref|ZP_04926136.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
gi|124601868|gb|EAY60878.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
Length = 528
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 180/296 (60%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG L+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLRLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 411 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 470
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 471 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 526
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 183/315 (58%), Gaps = 20/315 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + AAA
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAAATR 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QAV ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 255
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+A+ L+ ++ +L + P SL+ IG ++ + I D +A D
Sbjct: 256 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVDAA 315
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L+ VL TL+ RE++V++ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 316 SFILLQEQLDSVLHTLSDREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTL 375
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 376 SKLRHPSRSQKLRDY 390
>gi|227503471|ref|ZP_03933520.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|306836281|ref|ZP_07469263.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
gi|227075974|gb|EEI13937.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|304567873|gb|EFM43456.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
Length = 337
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 160/252 (63%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 86 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 205
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE++E +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 206 EELSEESGIDENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMR 265
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
D+ V+DTL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 266 HSDIRGVIDTLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRD 325
Query: 512 KKRTKHLMQYAI 523
R L +YA+
Sbjct: 326 GNRADRLREYAL 337
>gi|381162257|ref|ZP_09871487.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254162|gb|EHY88088.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 343
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 156/237 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WW
Sbjct: 106 AKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYATWW 165
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ GR NEE+A +G++ ++
Sbjct: 166 IRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAESKV 225
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++L + P SLD +G ++ + I D EA AE +I + +DL +VL TL+ R
Sbjct: 226 ASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLSDDLRRVLATLDDR 285
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
E+QV+R R+GL+DG+ +TL +IG+ +SRER+RQIE KL++ +R L YA
Sbjct: 286 EQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMSKLRHGERADRLRAYA 342
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 181/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +EVL+++ P+ +WAA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETEVKQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D E + E ++F+++DL +L L P+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQDTELQEMLED-EGPSPEYYTTQEFLRQDLNNLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGLEDG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 271 QREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRR 318
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 178/288 (61%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P+ +WA + E+ + + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + + E ++F+++DL +L L P+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQDTELQEMLED-DGPSPEYYTTQEFLRQDLNNLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+VV RFGLEDG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 271 QREVVALRFGLEDGNELSLAKVGERLNLSRERVRQLEHQALAHLRRRR 318
>gi|354581361|ref|ZP_09000265.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
lactis 154]
gi|353201689|gb|EHB67142.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
lactis 154]
Length = 316
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIA+ Y G GM DL+QEG GL++ EKFD S
Sbjct: 67 ELSKRIEEGDEDAKRRLAEANLRLVVSIARRYAGRGMQFLDLIQEGNMGLIKAVEKFDYS 126
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ +S++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 127 KGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEE 186
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ ++ +++ +L + P SL+ +G + + I D +A D + +KE
Sbjct: 187 IAKEMDITPEKVREILKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAAAFELLKE 246
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VLDTL RE V+R RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 247 QLEEVLDTLTDREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPS 306
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 307 RSKRLKDF 314
>gi|291531112|emb|CBK96697.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum 70/3]
Length = 358
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 128 ANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITR 187
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
S++DQ+RTIR+P HMVE +VK+ QL ENG P +E+A+ G+++ R+ +L
Sbjct: 188 SIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDRVREILRIS 247
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D +A + + +KE L ++L TL PRE +V+R
Sbjct: 248 QDPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILGTLTPREEKVLRL 307
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 308 RFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDF 356
>gi|289578595|ref|YP_003477222.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
italicus Ab9]
gi|289528308|gb|ADD02660.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter italicus Ab9]
Length = 273
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 111/252 (44%), Positives = 175/252 (69%), Gaps = 2/252 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++ EL +R+ G K + I SN+RLV+SIAK Y G G++ DL+QEG GL++ E+F
Sbjct: 21 EENELLKRIEEGDEEAKKRFIESNLRLVVSIAKGYVGKGISFPDLIQEGNLGLLKAVERF 80
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KG+KFSTYA WWIKQ + ++++DQ+RTIR+P HMVE+ ++ + +KQ + GR P+
Sbjct: 81 DYRKGYKFSTYATWWIKQTITRAIADQARTIRIPVHMVESVNKLLKIQKQFLQKLGREPS 140
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+AE +S K+ +L + SL++ +G ++N K ++IAD EA + L
Sbjct: 141 IEEIAEEMNISEKKAKVLLEIVQGIVSLEEPVGEDENGKLGDIIADKEAVDPVEELESML 200
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIG-ELMGVSRERIRQIESSAFRKL 509
+KE +++VL TL PRE +V+R RFGL+DG+++TL+E+G EL G+SRER+RQIE+ A ++L
Sbjct: 201 LKEQVDEVLSTLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIETKALKRL 260
Query: 510 KNKKRTKHLMQY 521
++ R++ L ++
Sbjct: 261 RHPNRSRRLKEF 272
>gi|167750934|ref|ZP_02423061.1| hypothetical protein EUBSIR_01919 [Eubacterium siraeum DSM 15702]
gi|167656113|gb|EDS00243.1| RNA polymerase sigma factor RpoD [Eubacterium siraeum DSM 15702]
gi|291557421|emb|CBL34538.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum
V10Sc8a]
Length = 358
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 128 ANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITR 187
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
S++DQ+RTIR+P HMVE +VK+ QL ENG P +E+A+ G+++ R+ +L
Sbjct: 188 SIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDRVREILRIS 247
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D +A + + +KE L ++L TL PRE +V+R
Sbjct: 248 QDPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILGTLTPREEKVLRL 307
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 308 RFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDF 356
>gi|302389497|ref|YP_003825318.1| RNA polymerase sigma-70 subunit RpoD [Thermosediminibacter oceani
DSM 16646]
gi|302200125|gb|ADL07695.1| RNA polymerase, sigma 70 subunit, RpoD [Thermosediminibacter oceani
DSM 16646]
Length = 367
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 166/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 118 ELAKRIEKGDKEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 177
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 178 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPTPEE 237
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE L ++++ ++ + P SL+ IG ++ + I D EA+ D + ++E
Sbjct: 238 IAEEMELPVEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEEAQAPADAAAYRLLRE 297
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VL+TL PRE +V+R RFGL+DG+ +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 298 QLEDVLETLTPREEKVLRLRFGLDDGKPRTLEEVGQVFGVTRERIRQIEAKALRKLRHPS 357
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 358 RSKKLKDF 365
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 217/360 (60%), Gaps = 10/360 (2%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE--VDYSDPLRYLRATT 221
+ V+S ++ E K RR R A + S+ + QE + +S L T
Sbjct: 197 VVVQSSKKKENKTRRKREFVSTAVSSQSLTLKAN--------QEDLLGFSASLVKRAPNT 248
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
+ R+L A E ++S G++ L +LE +R + E + + WA A+GVD++ L++ L+
Sbjct: 249 KNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLH 308
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G C+D++I S LV+ +A+ Y+G G+ L DL+Q G G+++GAE+FD+++G+KFSTY
Sbjct: 309 RGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTY 368
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
+WI++++ + ++ +R I +P+ + A ++++ARK + S + + P++ E+A+ TGLS
Sbjct: 369 VQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLS 428
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
+ ++ + + S+DQK+G ++ E++ D E+ ED ++K+ M++D+ +L
Sbjct: 429 LDKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKG 488
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
LN RER+++ RFGL D + ++LQ+IG L VS+ERIR+IE A KLKN+ L Y
Sbjct: 489 LNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKLHYY 548
>gi|334563830|ref|ZP_08516821.1| RNA polymerase sigma factor SigB [Corynebacterium bovis DSM 20582]
Length = 332
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 188/322 (58%), Gaps = 13/322 (4%)
Query: 201 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
+R S + +D +R + LLTA +E++LS I+ L + + + G +
Sbjct: 23 RRRSTNDNPSADLVRVYLNGIGKTALLTAEDEVELSKRIEVGLYAQHILD-----SGETL 77
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
T A+ +R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG
Sbjct: 78 TRAR--------KRDLKVLAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 129
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++
Sbjct: 130 LGLIRAMEKFDYDKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRE 189
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAE 440
+Y + GR NEE+AE +G+ ++ +L + P SLD +G ++ + I D EA
Sbjct: 190 MYQQLGREATNEELAEESGIDEPKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSEAT 249
Query: 441 TAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 500
AE ++ D+ VLDTL RE+ V++ R+GL+DG +TL +IG G+SRER+RQ
Sbjct: 250 DAEAAVVASLRHSDVRAVLDTLEDREQDVIKLRYGLDDGVPRTLDQIGRRFGLSRERVRQ 309
Query: 501 IESSAFRKLKNKKRTKHLMQYA 522
IE KL++ R L +YA
Sbjct: 310 IEREVMAKLRDGDRADRLREYA 331
>gi|392531598|ref|ZP_10278735.1| RNA polymerase sigma factor RpoD [Carnobacterium maltaromaticum
ATCC 35586]
Length = 375
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYQKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 373
>gi|377562745|ref|ZP_09792113.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
gi|377530042|dbj|GAB37278.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
Length = 483
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 200/352 (56%), Gaps = 19/352 (5%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
KA + A+ A V + R+ R + +D +R LL A EE++
Sbjct: 144 KASKDADAKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 203
Query: 235 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 289
L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 204 LAKRIEAGLYATERLRRIME--SGEKISTAQ------------KRDLNWISRDGNRAKNH 249
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA
Sbjct: 250 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 309
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++ +
Sbjct: 310 ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQ 369
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE V
Sbjct: 370 QYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGV 429
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
VR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 430 VRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 481
>gi|418463311|ref|ZP_13034327.1| RNA polymerase sigma factor SigB [Saccharomonospora azurea SZMC
14600]
gi|359733714|gb|EHK82704.1| RNA polymerase sigma factor SigB [Saccharomonospora azurea SZMC
14600]
Length = 313
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 156/237 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WW
Sbjct: 76 AKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYATWW 135
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ GR NEE+A +G++ ++
Sbjct: 136 IRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAESKV 195
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++L + P SLD +G ++ + I D EA AE +I + +DL +VL TL+ R
Sbjct: 196 ASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLSDDLRRVLATLDDR 255
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
E+QV+R R+GL+DG+ +TL +IG+ +SRER+RQIE KL++ +R L YA
Sbjct: 256 EQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMSKLRHGERADRLRAYA 312
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 190/326 (58%), Gaps = 16/326 (4%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R T + LL NEE+ L +Q L++ E RE L PT+ +WA
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 272 DQR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
D +L++++ + K + SNIRLV+SIAK YQ G++ QDL QEG GL R EK
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +GF+FSTYA WWIKQ++ ++++DQ RTIRLP H+ + +++ ++L +E GR
Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDA 180
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI-------------GINQNLKPSEVIAD 436
EE+ E + L+ +++ + + S++Q++ G + L +V+ D
Sbjct: 181 RLEEITEKSTLTAEKIEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLGDVMGD 240
Query: 437 PEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496
PEA+ AE+ + +K+D+ +++ TLN RE+ V+R RFGL+DG+ KTL+EIG V+RE
Sbjct: 241 PEAQPAEEASY-QMLKDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRE 299
Query: 497 RIRQIESSAFRKLKNKKRTKHLMQYA 522
RIRQIES A KL+ R + Y
Sbjct: 300 RIRQIESRALHKLRQPYRNHAVKCYV 325
>gi|407275570|ref|ZP_11104040.1| RNA polymerase sigma factor SigB [Rhodococcus sp. P14]
gi|452960741|gb|EME66056.1| RNA polymerase sigma factor SigB [Rhodococcus ruber BKS 20-38]
Length = 320
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 164/248 (66%), Gaps = 6/248 (2%)
Query: 281 NYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
+ IL +D ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +K
Sbjct: 72 DLAILVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAK 131
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR ++E+
Sbjct: 132 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDEL 191
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
+ +G+ ++++ +L + P SLD +G ++ + I D EA +AE+ +I + D
Sbjct: 192 SAESGIPVEKIGDLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAENAVIAGLLHSD 251
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG+L G+SRER+RQIE KL+ R
Sbjct: 252 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLREGDR 311
Query: 515 TKHLMQYA 522
+ L YA
Sbjct: 312 AERLRAYA 319
>gi|25028367|ref|NP_738421.1| RNA polymerase sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259507424|ref|ZP_05750324.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
gi|23493652|dbj|BAC18621.1| sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259164989|gb|EEW49543.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
Length = 333
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 159/251 (63%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 KRDLKVLAKEGKKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 142
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 143 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 202
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 203 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAETAVVASMRH 262
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL RE+ V+R R+GLEDG +TL +IG G+SRER+RQIE KL++
Sbjct: 263 SDIRSVLSTLEQREQDVIRLRYGLEDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDG 322
Query: 513 KRTKHLMQYAI 523
+R L +YA+
Sbjct: 323 ERAAKLREYAV 333
>gi|403379073|ref|ZP_10921130.1| RpoD subfamily RNA polymerase sigma-70 subunit [Paenibacillus sp.
JC66]
Length = 372
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 163/251 (64%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ +L +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 120 DEIDLAKRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 179
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 180 DHIKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 239
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ LS ++ ++ + P SL+ IG + + I D EA D +
Sbjct: 240 PEEIAKEMDLSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 299
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 300 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 360 HPSRSKRLKDF 370
>gi|359767847|ref|ZP_09271629.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|378717657|ref|YP_005282546.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
gi|359314763|dbj|GAB24462.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|375752360|gb|AFA73180.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
Length = 483
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 195 LLNAEEEVELAKRIEAGLFATERLRRIME--SGEKISTAQ------------KRDLNWIS 240
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 241 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 300
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 301 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 360
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+
Sbjct: 361 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 420
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 421 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 480
Query: 521 Y 521
Y
Sbjct: 481 Y 481
>gi|270291312|ref|ZP_06197534.1| RNA polymerase primary sigma factor [Pediococcus acidilactici 7_4]
gi|304385062|ref|ZP_07367408.1| RNA polymerase sigma factor rpoD [Pediococcus acidilactici DSM
20284]
gi|418069346|ref|ZP_12706624.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Pediococcus acidilactici MA18/5M]
gi|427441992|ref|ZP_18925490.1| RNA polymerase primary sigma factor [Pediococcus lolii NGRI 0510Q]
gi|270280158|gb|EFA25994.1| RNA polymerase primary sigma factor [Pediococcus acidilactici 7_4]
gi|304329256|gb|EFL96476.1| RNA polymerase sigma factor rpoD [Pediococcus acidilactici DSM
20284]
gi|357536815|gb|EHJ20843.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Pediococcus acidilactici MA18/5M]
gi|425786860|dbj|GAC46278.1| RNA polymerase primary sigma factor [Pediococcus lolii NGRI 0510Q]
Length = 379
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 142 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYQKGFKFSTYATWW 201
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + ++
Sbjct: 202 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPMPEEIGAEMDMPSDKV 261
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 262 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEGVLDTLTDR 321
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 322 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 377
>gi|227549119|ref|ZP_03979168.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078816|gb|EEI16779.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
Length = 331
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 160/251 (63%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 81 KRDLKILAKQGRRARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 140
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ R+++Y GR P NE
Sbjct: 141 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIRREMYQSLGREPTNE 200
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+++ +G+ ++ +L + P SLD +G ++ + I D EA AED ++
Sbjct: 201 ELSDESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDAEATDAEDAVVSSLRH 260
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+D++ ++ L RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL+
Sbjct: 261 DDIQDIIGGLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMAKLRVG 320
Query: 513 KRTKHLMQYAI 523
+R L YA+
Sbjct: 321 ERADRLRDYAL 331
>gi|257056437|ref|YP_003134269.1| RNA polymerase sigma factor SigB [Saccharomonospora viridis DSM
43017]
gi|256586309|gb|ACU97442.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length = 342
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 184/317 (58%), Gaps = 23/317 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA EE+ L+ I+ + FAQ
Sbjct: 43 ADLVRVYLNGIGKTALLTAEEEVDLAKRIE------------------AGVFAQHVLDTS 84
Query: 271 VD-----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D + EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 85 DDLSEERKAELSEVVRDGEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 144
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+
Sbjct: 145 AVEKFDYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRL 204
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR +EE+A +G++ K++ +L + P SLD +G +++ + I D EA AE+
Sbjct: 205 GREATHEELAAESGIAEKKVADLLDHARDPVSLDMPVGADEDAPLGDFIEDSEAANAENS 264
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+I +++DL +VL TL+ RE V+R R+GL+DG+ +TL +IG+ +SRER+RQIE
Sbjct: 265 VISTLLQDDLRRVLATLDDREEHVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREV 324
Query: 506 FRKLKNKKRTKHLMQYA 522
KL++ +R L YA
Sbjct: 325 MAKLRHGERADKLRAYA 341
>gi|414083890|ref|YP_006992598.1| RNA polymerase sigma factor rpoD [Carnobacterium maltaromaticum
LMA28]
gi|412997474|emb|CCO11283.1| RNA polymerase sigma factor rpoD [Carnobacterium maltaromaticum
LMA28]
Length = 319
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 82 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYQKGFKFSTYATWW 141
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 142 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 201
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 202 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDR 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 262 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 317
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 13/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P + A +L R + G +
Sbjct: 101 LLTAAEEVELARRVEAGLFAE-------EKLTNTPDLSTRLAV------DLDRLVVLGRM 147
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 148 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 207
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA GL+ +R+
Sbjct: 208 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLGLTGERV 267
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL + P SL +G +++ ++I D +A + + ++E L+ VL TL R
Sbjct: 268 TEVLRLAQEPVSLHAPVGEEEDVALGDLIEDGDAASPVESAAFLLLREHLDAVLSTLGER 327
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 328 ERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLGKLRDHAFADQLRGY 383
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 197/355 (55%), Gaps = 47/355 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS--------------------AGIQDLLKLEGLRE 250
+D LR LLT+ EE+ LS A I+ LL LE L++
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC----------------------KD 288
+ PT +WA AA + EL R LN G +D
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
+MI +N+RLV+++AK YQ GM L DLVQEG GL R EKFD ++GF+FSTYA+WWI+Q
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
+ ++++ QSRTIRLP H+ E R+K ++++ SE GR + ++A+ G+S +
Sbjct: 199 GITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEQGRLASVSDLAKELGVSEDTVRQT 258
Query: 409 LLSPKAPR--SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRE 466
L + PR SL+ ++G +Q+ + +++ D A T E L + + +DLE +LD LNPRE
Sbjct: 259 L--ARVPRSVSLETRVGKDQDTQLGDLLEDGHA-TPEQTLTRDALHDDLEHLLDELNPRE 315
Query: 467 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+V+R RFGLED +TL EIGE M +SRER+RQIE+ A KL+ +R + Y
Sbjct: 316 AEVIRSRFGLEDDTPRTLAEIGEAMALSRERVRQIETRALLKLRQPQRRSKVRDY 370
>gi|320530863|ref|ZP_08031900.1| RNA polymerase sigma factor RpoD [Selenomonas artemidis F0399]
gi|402302656|ref|ZP_10821765.1| RNA polymerase sigma factor RpoD [Selenomonas sp. FOBRC9]
gi|320136897|gb|EFW28842.1| RNA polymerase sigma factor RpoD [Selenomonas artemidis F0399]
gi|400380232|gb|EJP33053.1| RNA polymerase sigma factor RpoD [Selenomonas sp. FOBRC9]
Length = 370
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 140 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 199
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+H ++
Sbjct: 200 AIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVARVHEIMKIA 259
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 260 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 319
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 368
>gi|313897089|ref|ZP_07830636.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974536|gb|EFR40004.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 137
str. F0430]
Length = 370
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 140 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 199
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+H ++
Sbjct: 200 AIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVARVHEIMKIA 259
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 260 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 319
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 368
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 182/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P +R+++ G
Sbjct: 213 LLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLPA---------AQRRDMQWICRDGDR 263
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 264 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 323
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 324 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 383
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 384 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 443
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 444 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 499
>gi|341820065|emb|CCC56296.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella
thailandensis fsh4-2]
Length = 378
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 141 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 200
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ ++ ++
Sbjct: 201 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRNLLQDLGREPTPEEIGAEMDVATDKV 260
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 261 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVLDTLTDR 320
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 321 EENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDF 376
>gi|403730463|ref|ZP_10949020.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
gi|403202499|dbj|GAB93351.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
Length = 339
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 194/329 (58%), Gaps = 23/329 (6%)
Query: 202 RPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--REVLS 253
RP++ E D SD +R + LL A +E++L+ I+ GL + VL
Sbjct: 25 RPAMTEQDLDAQSPASDLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAKHVLE 79
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
R S T +R+L + G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 80 TRKRLSAT----------RKRDLAIIVREGEYARAHLLEANLRLVVSLAKRYTGRGMPLL 129
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE +
Sbjct: 130 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK 189
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEV 433
+ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++ +
Sbjct: 190 LARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPVGNDEEAPLGDF 249
Query: 434 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 493
I D E +AE+ +I + D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG + G+
Sbjct: 250 IEDAEGTSAENAVIAGLLHSDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGL 309
Query: 494 SRERIRQIESSAFRKLKNKKRTKHLMQYA 522
SRER+RQIE KL+ +R + L YA
Sbjct: 310 SRERVRQIEREVMNKLRQGERAERLRAYA 338
>gi|227504896|ref|ZP_03934945.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
gi|227198489|gb|EEI78537.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
Length = 337
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 161/252 (63%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 86 EKRDLKILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 205
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 206 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVAAMR 265
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
D+ V++TL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 266 HSDIRGVIETLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLRD 325
Query: 512 KKRTKHLMQYAI 523
R L +YA+
Sbjct: 326 GNRADRLREYAL 337
>gi|399046975|ref|ZP_10739163.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
CF112]
gi|398055125|gb|EJL47217.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
CF112]
Length = 375
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 138 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE L+ +++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTPEKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D +A D + +KE LE VLDTL R
Sbjct: 258 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 373
>gi|294812504|ref|ZP_06771147.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|294325103|gb|EFG06746.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
Length = 436
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 12/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 151 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 198
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 199 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYTRGYKFSTYATWW 258
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 259 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEQGSEPTPEEVAAQLDLPPERV 318
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL + P SL +G +++ ++I D +A + + ++E LE VL TL R
Sbjct: 319 SEVLRLAQEPVSLHAPVGEEEDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGER 378
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 379 ERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGY 434
>gi|377567675|ref|ZP_09796883.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
gi|377535215|dbj|GAB42048.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
Length = 338
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 88 KRDLAVIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 147
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR ++
Sbjct: 148 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDD 207
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D EA +AE+ +I +
Sbjct: 208 ELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLH 267
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG + G+SRER+RQIE KL++
Sbjct: 268 SDIRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRHG 327
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 328 DRAERLRAYA 337
>gi|377561657|ref|ZP_09791100.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
gi|377521219|dbj|GAB36265.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
Length = 337
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 87 KRDLAIVVREGEIARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 146
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR ++
Sbjct: 147 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDD 206
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D EA +AE +I +
Sbjct: 207 ELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAESAVIAGLLH 266
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG + G+SRER+RQIE KL+
Sbjct: 267 SDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQG 326
Query: 513 KRTKHLMQYA 522
+R + L YA
Sbjct: 327 ERAERLRAYA 336
>gi|258653916|ref|YP_003203072.1| RNA polymerase sigma factor SigB [Nakamurella multipartita DSM
44233]
gi|258557141|gb|ACV80083.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella
multipartita DSM 44233]
Length = 334
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+++LR + G ++ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 84 RKDLRMVVRDGGRARNHLLVANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 143
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ +++L+ + GR
Sbjct: 144 TKGFKFSTYATWWIRQAISRGMADQGRTIRLPVHLVEQVNKLSRLKRELHQQLGRDATLA 203
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D E+ +AE ++ FM
Sbjct: 204 ELAHESGIPEEKIADLLDHARDPVSLDMPVGSDEEAPLGDFIEDSESTSAEAAVVAGFMH 263
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+D+ +VL TL+ RE+ VVR R+GL+DGR +TL EIG G+SRER+RQIE + KL+
Sbjct: 264 DDINRVLRTLDDREQTVVRLRYGLDDGRPRTLDEIGRHFGISRERVRQIERDSMAKLRVG 323
Query: 513 KRTKHLMQYA 522
R++ L YA
Sbjct: 324 DRSEVLRSYA 333
>gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397277|gb|AAS05137.1| SigA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 509
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 221 LLNAEEEVELAKRIEAGLYATQLMSEMAERGEKLPA-AQ--------RRDMMWICRDGDR 271
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 272 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 331
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 332 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDPGREPTPEELAKEMDITPEKV 391
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 392 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 451
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 452 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 507
>gi|213964561|ref|ZP_03392761.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
gi|213952754|gb|EEB64136.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
Length = 329
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 184/312 (58%), Gaps = 13/312 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LL+A EE++LS I+ + E L + G T A+
Sbjct: 30 ADLVRVYLNGIGKTALLSAEEEVELSKRIEAGVYAEHLLQ-----TGAKMTRAK------ 78
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+R+++ G + ++ +N+RLV+S+AK Y GM L DL+QEG GL+R EKF
Sbjct: 79 --KRDVKILAKEGKAARAHLLEANLRLVVSLAKRYTNRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY + GR
Sbjct: 137 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKISRIKRELYQQLGREAT 196
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
NEE+AE +G+ ++ +L + P SLD +G ++ + I D EA AE+ ++
Sbjct: 197 NEELAEESGIPEAKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDAEEAVVASL 256
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
D+ KVL TL RE++V++ R+GL+DG +TL +IG G+SRER+RQIE KL+
Sbjct: 257 RHHDVRKVLSTLEIREQEVIKLRYGLDDGLPRTLDQIGRHFGLSRERVRQIEREVMSKLR 316
Query: 511 NKKRTKHLMQYA 522
R L +YA
Sbjct: 317 EGDRADKLREYA 328
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D EA + + + ++ +++DL+ +++ L P+
Sbjct: 212 RECLSMARQPISLDVRVGDNQDTELSELLEDHEA-SPDQYITQELLRQDLKNLMEELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R V+ RFGLEDG+ +L +IG+ + +SRER+RQ+E A +L+ ++
Sbjct: 271 QRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRRR 318
>gi|323484375|ref|ZP_08089742.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323692387|ref|ZP_08106623.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|355627292|ref|ZP_09049193.1| RNA polymerase sigma factor rpoD [Clostridium sp. 7_3_54FAA]
gi|323402369|gb|EGA94700.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323503527|gb|EGB19353.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|354820354|gb|EHF04771.1| RNA polymerase sigma factor rpoD [Clostridium sp. 7_3_54FAA]
Length = 372
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EK+D SKGFKFSTYA WW
Sbjct: 135 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYSKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE R+ +QL E GR P+ EEVAE + ++R+
Sbjct: 195 IRQAITRSIADQARTIRIPVHMVETINRLIRTSRQLLQELGREPHPEEVAERMDMPVERV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D + D + E L +VLDTL R
Sbjct: 255 REIMKISQDPVSLETPIGEEEDSHLGDFIQDDHVQVPLDAATFTLLHEQLMEVLDTLTDR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E++V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 315 EQKVLRLRFGLDDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDY 370
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 182/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P +R+++ G
Sbjct: 200 LLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLP---------AAQRRDMQWICRDGDR 250
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 251 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 310
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 311 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 370
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 371 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 430
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 431 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 486
>gi|386005579|ref|YP_005923858.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
gi|380726067|gb|AFE13862.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
Length = 324
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 36 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 86
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 87 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 146
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 147 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 206
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VLDTL+ R
Sbjct: 207 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSER 266
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 267 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 322
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 185/300 (61%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L LE +E L E+ G PT +WA A+ + + EL+ + G
Sbjct: 35 LLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRAGQT 94
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 95 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 154
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A L+ K++
Sbjct: 155 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELATELDLTPKQV 214
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + ED M+ DLEK++ L +
Sbjct: 215 REYLEKARQPLSLDLRVGDNQDTELGELLEDS-GPSPEDFATYSAMQVDLEKLMADLTEQ 273
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL DG+ TL +IG+ + +SRER+RQIE A KL +KR + +Y S
Sbjct: 274 QREVLMLRFGLVDGQPMTLAKIGDQLKISRERVRQIEREALSKL--RKRQADMREYIAVS 331
>gi|433545473|ref|ZP_20501826.1| RNA polymerase sigma factor [Brevibacillus agri BAB-2500]
gi|432183128|gb|ELK40676.1| RNA polymerase sigma factor [Brevibacillus agri BAB-2500]
Length = 374
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE L+ +++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTPEKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D +A D + +KE LE VLDTL R
Sbjct: 257 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTLTDR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|357008316|ref|ZP_09073315.1| SigA [Paenibacillus elgii B69]
Length = 372
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 135 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHIKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ LS ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMDLSTDKV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D EA D + +KE LE VLDTL R
Sbjct: 255 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTER 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 315 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 370
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 184/288 (63%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ L ++ LS G P F+QWA A ++++EL++ + L
Sbjct: 23 LLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIATAEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++R IRLP H+ E ++K+A++ L + GR E+AE L+ ++
Sbjct: 143 IRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLSQKLGRAATVTELAEELELTPPQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G +Q+ + +++ D + ED + + M+ DLEK+L L +
Sbjct: 203 REYLERARQPLSLDLRVGDHQDTELGDLLEDT-GPSPEDFVTQSAMQMDLEKLLSDLTQQ 261
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R V+ RFGL DG+ TL +IG+ + +SRER+RQIE A KL+ +K
Sbjct: 262 QRDVLSLRFGLADGQPLTLAKIGDRLSISRERVRQIEREALAKLRKRK 309
>gi|291302005|ref|YP_003513283.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571225|gb|ADD44190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 323
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 188/318 (59%), Gaps = 25/318 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW---AA 267
+D +R RL+ A EE+ L+ I+ L FA+W
Sbjct: 22 TDSVRAYLNGIGKHRLINAAEEVDLAKAIETGL------------------FAEWRLSDP 63
Query: 268 AAGVD----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
A +D +R+LR+ + G K ++ +N+RLV+SIAK Y G G+ L DL+QEG GL
Sbjct: 64 ARPIDDLQLERDLRQIVAEGRRAKSMLLKANLRLVVSIAKRYVGRGVALLDLIQEGNLGL 123
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P H E R+ + R++L +
Sbjct: 124 IRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRVPAHTAEQINRIAKIRRELTA 183
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAE 443
E GR P +EE+AE GL R+ +L + P SLDQ + ++ S+++A P AE
Sbjct: 184 EQGREPRHEEIAERMGLEPYRVLELLSYDRDPISLDQPVSDDRQTPLSDLVARPVDPAAE 243
Query: 444 DLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503
++++LE+ L L RER V+R RFG++DGR +TL+E+GE +G+SRER+RQ+E
Sbjct: 244 PNPANAQLRQELERALTDLPARERAVLRARFGIDDGRQRTLEEVGEELGLSRERVRQLEK 303
Query: 504 SAFRKLKNKKRTKHLMQY 521
+ KL+ + L +Y
Sbjct: 304 LSLNKLREPGMARALAEY 321
>gi|441508334|ref|ZP_20990258.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
gi|441447362|dbj|GAC48219.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
Length = 485
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 197 LLNAEEEVELAKRIEAGLYATERLRRIME--SGEKISTAQ------------KRDLNWIS 242
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 243 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 302
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 303 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 362
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+
Sbjct: 363 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 422
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 423 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 482
Query: 521 Y 521
Y
Sbjct: 483 Y 483
>gi|220932077|ref|YP_002508985.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothermothrix
orenii H 168]
gi|219993387|gb|ACL69990.1| RNA polymerase, sigma 70 subunit, RpoD family [Halothermothrix
orenii H 168]
Length = 358
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 121 AKRELVEANLRLVVSIAKKYVGRGMSFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 180
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+ E G+ +++
Sbjct: 181 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIGEEMGMPAEKV 240
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG ++ + I D +A ++E L+ VLDTL R
Sbjct: 241 REILKIAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPASAASFTLLREQLDDVLDTLTDR 300
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E++V+ RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 301 EKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLKDY 356
>gi|312139424|ref|YP_004006760.1| sigma-70 factor sigb [Rhodococcus equi 103S]
gi|325672687|ref|ZP_08152383.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
gi|311888763|emb|CBH48075.1| sigma-70 factor SigB [Rhodococcus equi 103S]
gi|325556564|gb|EGD26230.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
Length = 322
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 165/250 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 72 KRDLATIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 131
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +E
Sbjct: 132 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDE 191
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+++ +G+ ++ +L + P SLD +G ++ + I D EA +AE+ +I +
Sbjct: 192 ELSQESGIPEHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLH 251
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG+L G+SRER+RQIE KL+
Sbjct: 252 SDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQG 311
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 312 ERADRLRAYA 321
>gi|365862000|ref|ZP_09401757.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
gi|364008482|gb|EHM29465.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
Length = 363
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 186/312 (59%), Gaps = 15/312 (4%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR + LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIT-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 169
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV +++L E G P
Sbjct: 170 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEP 229
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
EE+A L+ +R+ VL + P SL +G ++ ++I D +A + +
Sbjct: 230 TAEEIAVELDLTPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFL 289
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++E LE VL TL RER+VV+ R+GLEDGR +TL+EIG + GV+RERIRQIES +L
Sbjct: 290 LLREHLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRL 349
Query: 510 KNKKRTKHLMQY 521
++ L Y
Sbjct: 350 RDHAFADQLRGY 361
>gi|83589488|ref|YP_429497.1| RNA polymerase sigma factor RpoD [Moorella thermoacetica ATCC
39073]
gi|83572402|gb|ABC18954.1| RNA polymerase, sigma 70 subunit, RpoD [Moorella thermoacetica ATCC
39073]
Length = 361
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 165/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 112 ELAKRMEAGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 171
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 172 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPTPEE 231
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A + ++R+ + + P SL+ IG ++ + I D +A+ + ++E
Sbjct: 232 IAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDEDAQAPAEAASFMLLRE 291
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL++L PRE++V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 292 QLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 351
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 352 RSKKLKDY 359
>gi|359427058|ref|ZP_09218133.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
gi|358237671|dbj|GAB07715.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
Length = 332
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 160/240 (66%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 92 GEIARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 151
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR + E++ +G+
Sbjct: 152 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRELHQQLGREATDAEISNESGIPE 211
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
+++ +L + P SLD +G ++ + I D EA +AE+++I + D+ VL TL
Sbjct: 212 EKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAENVVISGLLHSDIRAVLATL 271
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ RE+QV+R R+GL+DG+ +TL +IG G+SRER+RQIE KL++ R + L YA
Sbjct: 272 DEREQQVIRMRYGLDDGQPRTLDQIGRAFGLSRERVRQIEREVMGKLRHGDRAERLRAYA 331
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 163/251 (64%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 222 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 281
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 282 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 341
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 342 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 401
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 402 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 461
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 462 HPSRSQVLRDY 472
>gi|365924947|ref|ZP_09447710.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266363|ref|ZP_14768838.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394425595|gb|EJE98541.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 374
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 137 SKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P EE+ + ++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPVPEEIGAEMDMPTDKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 257 REILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYELLKEQLESVLDTLTDR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 372
>gi|319949012|ref|ZP_08023109.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
gi|319437300|gb|EFV92323.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
Length = 460
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 182/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L ++ER G T AQ +R+ + G+
Sbjct: 172 LLNAEEEVELAKRIEAGLYATWYMAQVTER-GEKLTTAQ--------RRDFKWIERDGVR 222
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 223 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 282
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 283 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 342
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L VLDTL+ R
Sbjct: 343 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLRSVLDTLSER 402
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 403 EAGVVRLRFGLTDGLPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 458
>gi|359427064|ref|ZP_09218139.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
gi|358237677|dbj|GAB07721.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
Length = 491
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 202/351 (57%), Gaps = 39/351 (11%)
Query: 194 SGSTSRRKRPSVQEVDYSDPLRYLR------ATTSSSR----------LLTANEEMQLSA 237
SGS S + V + D S+ LR R A+ S R LL A EE++L+
Sbjct: 155 SGSDSAKSGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 214
Query: 238 GIQ-DLLKLEGLREVL--SERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKM 290
I+ L E LR ++ E+ G + +R LN+ G K+ +
Sbjct: 215 RIEAGLYATECLRRIVESGEKLGTAQ----------------KRDLNWVSRDGNRAKNHL 258
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 259 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 318
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 319 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 378
Query: 411 SPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVV 470
+ P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE VV
Sbjct: 379 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVV 438
Query: 471 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
R RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 439 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 489
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 180/287 (62%), Gaps = 1/287 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+E+ PT ++WAA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWAAQVHLSEDELTRIITLGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+R IRLP H+ E ++K+ +++L + GRH E+A A L ++
Sbjct: 152 IRQAITRAIAQQARAIRLPIHITEKLNKIKKTQRELAQKLGRHATPTEIAVALELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D E + E ++ +++DL+ +L L P+
Sbjct: 212 REYLNIARQPVSLDVRVGDNQDTELSELLED-EGPSPEHFTTQESLRQDLDDLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+R+V+ RFGL+DG +L ++G+ + +SRER+RQ+E A L+ +
Sbjct: 271 QREVITLRFGLQDGNELSLAKVGQRLNLSRERVRQLEHQALAHLRRR 317
>gi|238927758|ref|ZP_04659518.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas
flueggei ATCC 43531]
gi|238884474|gb|EEQ48112.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas
flueggei ATCC 43531]
Length = 383
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 157/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 153 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 212
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL E GR P+ EE+A+ G+++ R+H ++
Sbjct: 213 AIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPHPEEIAKEMGITVARVHEIMKIA 272
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 273 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 332
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 333 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 381
>gi|225388598|ref|ZP_03758322.1| hypothetical protein CLOSTASPAR_02334 [Clostridium asparagiforme
DSM 15981]
gi|225045346|gb|EEG55592.1| hypothetical protein CLOSTASPAR_02334 [Clostridium asparagiforme
DSM 15981]
Length = 405
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 159/233 (68%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
+++ +N+RLV+SIAK Y G GM+ DLVQEG GL++ EKFD KG++ STYA WW+KQ
Sbjct: 171 RLVEANLRLVVSIAKRYTGRGMSFLDLVQEGNIGLMKAVEKFDYEKGYRLSTYATWWVKQ 230
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ ++L+DQ+RTIRLP HMVEA +++ ++ L + GR P+N E+AEA G++ KR+ +
Sbjct: 231 AITRALADQARTIRLPVHMVEAVNKIRRTQRDLSVQLGRDPSNRELAEAVGMTEKRVEEL 290
Query: 409 LLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 468
+ + SL+ +G + +AD ++ ED ++E+++ +L LN RERQ
Sbjct: 291 IQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENVLLREEIDSMLQGLNERERQ 350
Query: 469 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
V++ RFGLE+GR TL+E+G V+RERIRQIE++A RKL+N R+K + +
Sbjct: 351 VIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLRNPVRSKKVRDF 403
>gi|256847131|ref|ZP_05552577.1| RNA polymerase sigma factor RpoS [Lactobacillus coleohominis
101-4-CHN]
gi|256715795|gb|EEU30770.1| RNA polymerase sigma factor RpoS [Lactobacillus coleohominis
101-4-CHN]
Length = 381
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 144 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 203
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + K++
Sbjct: 204 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTKKV 263
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + MK+ LE VLDTL R
Sbjct: 264 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDR 323
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 324 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 379
>gi|254389040|ref|ZP_05004270.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
gi|326441042|ref|ZP_08215776.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|197702757|gb|EDY48569.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
Length = 385
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 12/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 100 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 147
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 148 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYTRGYKFSTYATWW 207
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 208 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEQGSEPTPEEVAAQLDLPPERV 267
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL + P SL +G +++ ++I D +A + + ++E LE VL TL R
Sbjct: 268 SEVLRLAQEPVSLHAPVGEEEDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGER 327
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 328 ERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGY 383
>gi|374710255|ref|ZP_09714689.1| RNA polymerase sigma factor RpoD [Sporolactobacillus inulinus CASD]
Length = 368
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 162/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+N G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 120 LAKRINDGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYTK 179
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q + GR P EE+
Sbjct: 180 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQQLQDLGREPTPEEI 239
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
+ L +++ +L + P SL+ IG + + I D +A+ D + +KE
Sbjct: 240 GKEMELPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKAPSDAAAYELLKEQ 299
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R
Sbjct: 300 LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 515 TKHLMQY 521
+K L +
Sbjct: 360 SKQLKDF 366
>gi|373465533|ref|ZP_09556991.1| RNA polymerase sigma factor RpoD [Lactobacillus kisonensis F0435]
gi|371760192|gb|EHO48888.1| RNA polymerase sigma factor RpoD [Lactobacillus kisonensis F0435]
Length = 391
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 154 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 213
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 214 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 273
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 274 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDR 333
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 334 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 389
>gi|291520418|emb|CBK75639.1| RNA polymerase, sigma 70 subunit, RpoD [Butyrivibrio fibrisolvens
16/4]
Length = 376
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 138 AKNKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDYHKGYKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A A G+++ R+
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEEIAAAMGITVDRV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
H +L + P SL+ IG ++ + + D + +KE L +VLDTL R
Sbjct: 258 HEILKISQEPVSLETPIGEEEDSHLGDFLPDENVPVPAEAATFTLLKEQLHEVLDTLTER 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E++V+ RFGLEDG+ +TL+E+G+ V+RERIRQIE+ A RKL++ R++ L Y
Sbjct: 318 EQRVLILRFGLEDGKARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDY 373
>gi|390630647|ref|ZP_10258625.1| RNA polymerase sigma factor [Weissella confusa LBAE C39-2]
gi|390484114|emb|CCF30973.1| RNA polymerase sigma factor [Weissella confusa LBAE C39-2]
Length = 377
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 153/236 (64%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 140 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ + ++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRNLLQDLGREPTPEEIGAEMDIVTDKV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 260 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAYQMLKEQLESVLDTLTDR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDF 375
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 163/251 (64%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 216 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 275
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 276 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 335
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 336 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 395
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 396 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 455
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 456 HPSRSQVLRDY 466
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 220/360 (61%), Gaps = 8/360 (2%)
Query: 165 AVRSRRQTERKARRTRAAEKAAANVMSVKSGS-TSRRKRPSVQEVDYSDPLRYLRATTSS 223
VR+ ++ ERK RR RAA S+ S T + P V + +++SS
Sbjct: 206 VVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTFVKRT-------SSSSS 258
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
R L A E +++ G++ LE +R L E G + + WA A G+D++ L+++L +G
Sbjct: 259 RRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFG 318
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
C+D++I + LV+ IA+NY+G G+ ++DL+Q G GL++GAE+FD ++G++FSTY
Sbjct: 319 WYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQ 378
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
+WI++++ K + +R I++P+ + + ++++ARK L + +GR+P++ EVA+ TGLS+
Sbjct: 379 YWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLA 438
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ + + SLDQKIG K SE I D + E+ ++++ M+E++ +L L+
Sbjct: 439 KIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIYDLLRGLD 498
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
RE+QV+ R+G +D + K+L EIG L VS+ER+R+IE KL+++ ++L +Y I
Sbjct: 499 SREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGIRRNLSRYMI 558
>gi|429736608|ref|ZP_19270500.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154629|gb|EKX97351.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 138
str. F0429]
Length = 372
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 142 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 201
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+H ++
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRISRQLLQELGRDPRPEEIAKEMGISVARVHEIMKIA 261
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 321
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 322 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 370
>gi|336395495|ref|ZP_08576894.1| RNA polymerase sigma factor RpoD [Lactobacillus farciminis KCTC
3681]
Length = 371
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD GFKFSTYA W
Sbjct: 133 VAKQKLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRLGFKFSTYATW 192
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +
Sbjct: 193 WIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTGK 252
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ +L + P SL+ IG + + I D +A + ED + +KE LE VLDTL
Sbjct: 253 VRDILKIAQEPVSLETPIGEEDDSHLGDFIEDSDATSPEDHASYELLKEQLENVLDTLTD 312
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 313 REENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 369
>gi|334127198|ref|ZP_08501127.1| DNA-directed RNA polymerase sigma subunit SigA [Centipeda
periodontii DSM 2778]
gi|333389974|gb|EGK61129.1| DNA-directed RNA polymerase sigma subunit SigA [Centipeda
periodontii DSM 2778]
Length = 372
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 142 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 201
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+H ++
Sbjct: 202 AIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVVRVHEIMKIA 261
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 321
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 322 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 370
>gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [Mycobacterium gilvum PYR-GCK]
gi|315444851|ref|YP_004077730.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
gi|145217006|gb|ABP46410.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
gi|315263154|gb|ADT99895.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 488
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/302 (40%), Positives = 183/302 (60%), Gaps = 21/302 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L +E+ G T AQ R +Y +
Sbjct: 200 LLNAEEEVELAKRIEAGLYCTQLMAEFAEK-GEKLTTAQ--------------RRDYMWI 244
Query: 286 CKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFS
Sbjct: 245 CRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 304
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+
Sbjct: 305 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD 364
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVL 459
++ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL
Sbjct: 365 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL 424
Query: 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLM 519
+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 425 ETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR 484
Query: 520 QY 521
Y
Sbjct: 485 DY 486
>gi|334133805|ref|ZP_08507347.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
gi|333608654|gb|EGL19944.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
Length = 374
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ LS ++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMELSTDKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D EA D + +KE LE VLDTL R
Sbjct: 257 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTER 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|315226631|ref|ZP_07868419.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
gi|315120763|gb|EFT83895.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
Length = 690
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 185/311 (59%), Gaps = 11/311 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 387 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 437
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 438 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 495
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 496 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPT 555
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+E+A + ++++ V + P SL +G + + + ++I D +A + +
Sbjct: 556 PDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSEAVAFSL 615
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES KL+
Sbjct: 616 LQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGHVYGVTRERIRQIESKTMSKLR 675
Query: 511 NKKRTKHLMQY 521
+ R++ L +
Sbjct: 676 HPSRSQTLQDF 686
>gi|423332763|ref|ZP_17310545.1| RNA polymerase sigma-43 factor RpoD [Lactobacillus reuteri ATCC
53608]
gi|337727881|emb|CCC02969.1| RNA polymerase sigma-43 factor RpoD [Lactobacillus reuteri ATCC
53608]
Length = 380
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 178/314 (56%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA+EE+QL+ L++E EV
Sbjct: 105 VKINDPVRMYLKEIGRVNLLTADEEVQLA------LRIEKGDEV---------------- 142
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 143 ------------------AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAV 184
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 185 EKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGR 244
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ + +++ +L + P SL+ IG + + I D +A + D
Sbjct: 245 EPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAA 304
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ MK+ LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 305 YEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 364
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 365 KLRHPSRSKQLKDF 378
>gi|304437691|ref|ZP_07397643.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304369324|gb|EFM22997.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 370
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 156/229 (68%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 140 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 199
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+H ++
Sbjct: 200 AIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVARVHEIMKIA 259
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 260 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 319
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 368
>gi|303233350|ref|ZP_07320019.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
gi|302480479|gb|EFL43570.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
Length = 441
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 21/317 (6%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG- 270
DP+R LLTA++E+ L+ I+ G T A G
Sbjct: 138 DPVRMYLKEIGKVDLLTADDEVHLAMKIE---------------AGNKATEQLEKAEKGE 182
Query: 271 -----VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
+ R L R G+ K + ++N+RL +SIAK Y G GM DL+QEG GL+R
Sbjct: 183 IELSRSEMRRLMREEQVGLDAKQALTSANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIR 242
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E
Sbjct: 243 AVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQEL 302
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR P+ EE+ + +S ++ + + P SL+ IG ++ + I D A D
Sbjct: 303 GRDPSPEEIGKEMNMSPDKIREIQKISQEPVSLETPIGEEEDSSLGDFIEDSTAVAPPDA 362
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
++E L +VLD+L RER+V+++RFGLEDG +TL+E+G GV+RERIRQIES
Sbjct: 363 ASDSMLREQLNQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQIESKT 422
Query: 506 FRKLKNKKRTKHLMQYA 522
KL++ R+ L Y
Sbjct: 423 LAKLRHPSRSARLKDYV 439
>gi|257867642|ref|ZP_05647295.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC30]
gi|257873971|ref|ZP_05653624.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC10]
gi|257876550|ref|ZP_05656203.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC20]
gi|325571155|ref|ZP_08146727.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
casseliflavus ATCC 12755]
gi|420263955|ref|ZP_14766590.1| RNA polymerase sigma-43 factor [Enterococcus sp. C1]
gi|257801725|gb|EEV30628.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC30]
gi|257808135|gb|EEV36957.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC10]
gi|257810716|gb|EEV39536.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC20]
gi|325156240|gb|EGC68426.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
casseliflavus ATCC 12755]
gi|394768854|gb|EJF48731.1| RNA polymerase sigma-43 factor [Enterococcus sp. C1]
Length = 368
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFG++DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 186/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D EA + + + ++ +++DL+ +++ L P+
Sbjct: 212 RECLSMARQPISLDVRVGDNQDTELSELLEDHEA-SPDQYITQELLRQDLKNLMEELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R V+ RFGLEDG+ +L +IG+ + +SRER+RQ+E A +L+ ++
Sbjct: 271 QRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRRR 318
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 189/298 (63%), Gaps = 3/298 (1%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++ QSRTIRLP H+ E ++K+ +++L + GR E+AE L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLD K+G +Q+ + E++ D E + D + ++ ++ DL ++ L P
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPSDYVEQESLRRDLRNLMAELTP 262
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+++ V+ R+GL++G +L ++GE + +SRER+R++E A L ++R++ L +YA
Sbjct: 263 QQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHL--RRRSRLLAEYA 318
>gi|23308878|ref|NP_601117.2| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|21324681|dbj|BAB99304.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigA)
[Corynebacterium glutamicum ATCC 13032]
gi|385144017|emb|CCH25056.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 498
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 3/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 174 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 233
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 234 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 290
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 291 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 350
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L E GR P +E+++ +S +++ + + P SLDQ IG + + + I
Sbjct: 351 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 410
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA A D + +++ L+ VL+TL+ RE VV+ RFGL DG +TL EIG++ GV+R
Sbjct: 411 DSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTR 470
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIES KL++ R++ L Y
Sbjct: 471 ERIRQIESKTMSKLRHPSRSQVLRDY 496
>gi|358445390|ref|ZP_09156000.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608836|emb|CCE54245.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 334
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 161/252 (63%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+++ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 EKRDMKILVKEGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 142
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 143 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 202
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 203 EELAEESGIEENKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDAEATDAETAVVASMR 262
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
D+ V++TL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 263 HSDIRDVIETLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLRD 322
Query: 512 KKRTKHLMQYAI 523
R L +YA+
Sbjct: 323 GNRAARLREYAL 334
>gi|304403970|ref|ZP_07385632.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
curdlanolyticus YK9]
gi|304346948|gb|EFM12780.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
curdlanolyticus YK9]
Length = 377
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 163/251 (64%), Gaps = 1/251 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRIEKGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPA 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A LS ++ ++ + P SL+ IG + + I D EA D +
Sbjct: 245 PEEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 304
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 305 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364
Query: 511 NKKRTKHLMQY 521
+ R+K L +
Sbjct: 365 HPSRSKRLKDF 375
>gi|300173322|ref|YP_003772488.1| RNA polymerase sigma factor RpoD [Leuconostoc gasicomitatum LMG
18811]
gi|333398057|ref|ZP_08479870.1| RNA polymerase sigma factor RpoD [Leuconostoc gelidum KCTC 3527]
gi|333445880|ref|ZP_08480822.1| RNA polymerase sigma factor RpoD [Leuconostoc inhae KCTC 3774]
gi|406599969|ref|YP_006745315.1| RNA polymerase sigma factor RpoD [Leuconostoc gelidum JB7]
gi|299887701|emb|CBL91669.1| RNA polymerase sigma factor RpoD [Leuconostoc gasicomitatum LMG
18811]
gi|406371504|gb|AFS40429.1| RNA polymerase sigma factor RpoD [Leuconostoc gelidum JB7]
Length = 432
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 164/253 (64%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ + +R+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEINIAKRIEDGDIEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++E LE VL+TL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLREQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 163/259 (62%), Gaps = 2/259 (0%)
Query: 265 WAAA--AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
W A G +ELR+ L KD+M+ +N+RLVISIAK Y G++ DL+QEG G
Sbjct: 424 WMTADEMGDAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMG 483
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKF+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +KQL
Sbjct: 484 LMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLV 543
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETA 442
E GR P EE+AE L ++R+ +VL + P SL +G + + + I D AE
Sbjct: 544 QEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENP 603
Query: 443 EDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502
+ F+KE ++ VLDTL RER+V+ RFGL DG +TL+E+G V+RERIRQIE
Sbjct: 604 MEEASFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIE 663
Query: 503 SSAFRKLKNKKRTKHLMQY 521
+ A RKL++ R + +
Sbjct: 664 AKALRKLRHPTRISKIKGF 682
>gi|116492861|ref|YP_804596.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Pediococcus pentosaceus ATCC 25745]
gi|421894229|ref|ZP_16324719.1| RNA polymerase sigma factor RpoD [Pediococcus pentosaceus IE-3]
gi|116103011|gb|ABJ68154.1| RNA polymerase, sigma 70 subunit, RpoD [Pediococcus pentosaceus
ATCC 25745]
gi|385272773|emb|CCG90091.1| RNA polymerase sigma factor RpoD [Pediococcus pentosaceus IE-3]
Length = 379
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 174/314 (55%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA++E++L+ I+ G P Q A
Sbjct: 104 VKINDPVRMYLKEIGRVSLLTADQEVELALRIE----------------KGDPRARQELA 147
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 148 EA------------------------NLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAV 183
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 184 EKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGR 243
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ + ++ +L + P SL+ IG + + I D EA + D
Sbjct: 244 EPMPEEIGAEMDMPSDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAA 303
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 304 YELLKEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 363
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 364 KLRHPSRSKQLKDF 377
>gi|440778267|ref|ZP_20957033.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721370|gb|ELP45505.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 509
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 221 LLNAEEEVELAKRIEAGLYATQLMSEMAERGEKLPA-AQ--------RRDMMWICRDGDR 271
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 272 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 331
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 332 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 391
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 392 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 451
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 452 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 507
>gi|400536812|ref|ZP_10800346.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
gi|400329825|gb|EJO87324.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
Length = 505
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L L+ER P AQ +R++ G
Sbjct: 217 LLNAEEEVELAKRIEAGLYATQLMTELTERGDKLPA-AQ--------RRDMVWICRDGDR 267
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 268 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 327
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 328 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 387
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 388 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 447
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 448 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 503
>gi|332638574|ref|ZP_08417437.1| RNA polymerase sigma factor [Weissella cibaria KACC 11862]
Length = 377
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 153/236 (64%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 140 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ + ++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRNLLQDLGREPTPEEIGAEMDIVTDKV 259
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 260 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAYQMLKEQLESVLDTLTDR 319
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 EENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDF 375
>gi|13195265|gb|AAK15630.1|AF326348_2 RNA polymerase major sigma subunit [Corynebacterium ammoniagenes]
Length = 467
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 197/341 (57%), Gaps = 11/341 (3%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQ 240
A A+V +T R+ R Q +D +R LL A +E+ L+ AG+
Sbjct: 132 AGASVWDEDESATLRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 191
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
+L+ + +++E A + +R+LR G K+ ++ +N+RLV+S
Sbjct: 192 AQHRLDEMERLIAEGDAA-------AKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVS 244
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 245 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 304
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HMVE ++ +++L + GR P +E+A+ ++ +++ + + P SLDQ
Sbjct: 305 IRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQ 364
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
IG + + + I D EA A D + +++ L+ VL TL+ RE VVR RFGL DG
Sbjct: 365 TIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGM 424
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 425 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 465
>gi|331701385|ref|YP_004398344.1| RpoD subfamily RNA polymerase sigma-70 subunit [Lactobacillus
buchneri NRRL B-30929]
gi|406026947|ref|YP_006725779.1| RNA polymerase factor sigma-70 [Lactobacillus buchneri CD034]
gi|329128728|gb|AEB73281.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Lactobacillus
buchneri NRRL B-30929]
gi|405125436|gb|AFS00197.1| RNA polymerase factor sigma-70 [Lactobacillus buchneri CD034]
Length = 414
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 177 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 236
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 237 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 296
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 297 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDR 356
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 357 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 412
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 147/436 (33%), Positives = 229/436 (52%), Gaps = 24/436 (5%)
Query: 87 NSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADL 146
++A+P+ PA N++ A E E A DSV EQ D
Sbjct: 79 SAAEPQDSPA-------NSAEKAPSEEAEDAEDQLDSV-----------EQDAPADDVDF 120
Query: 147 EPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQ 206
+PTHE+++ E + Q E + ++V + R+ R Q
Sbjct: 121 DPTHEDIEEDEFDAPTDLD-EDDIQEELGEEEDEDEVEDTSSVWDEEESVALRQARKDAQ 179
Query: 207 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQW 265
+D +R LL A +E+ L+ I+ L + E+ R G +
Sbjct: 180 LTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQHRMDEMEKARAEGD----KA 235
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A + +++R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 236 AKLSPMEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIR 295
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L +
Sbjct: 296 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDL 355
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR P +E+A+ ++ +++ + + P SLDQ IG + + + I D EA A D
Sbjct: 356 GREPTPQELAKEMDITEEKVMEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDA 415
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+ +++ L+ VL TL+ RE VVR RFGL DG +TL EIG++ GV+RERIRQIES
Sbjct: 416 VSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKT 475
Query: 506 FRKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 476 MSKLRHPSRSQVLRDY 491
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 3/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 174 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 233
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 234 FAAGDKDAKLTPAV---RRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 290
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 291 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 350
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L E GR P +E+++ +S +++ + + P SLDQ IG + + + I
Sbjct: 351 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 410
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA A D + +++ L+ VL+TL+ RE VV+ RFGL DG +TL EIG++ GV+R
Sbjct: 411 DSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTR 470
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIES KL++ R++ L Y
Sbjct: 471 ERIRQIESKTMSKLRHPSRSQVLRDY 496
>gi|257869538|ref|ZP_05649191.1| RNA polymerase sigma-43 factor [Enterococcus gallinarum EG2]
gi|357050733|ref|ZP_09111930.1| RNA polymerase sigma factor rpoD [Enterococcus saccharolyticus
30_1]
gi|257803702|gb|EEV32524.1| RNA polymerase sigma-43 factor [Enterococcus gallinarum EG2]
gi|355380885|gb|EHG28017.1| RNA polymerase sigma factor rpoD [Enterococcus saccharolyticus
30_1]
Length = 368
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE LE VLDTL R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFG++DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|23099399|ref|NP_692865.1| RNA polymerase sigma factor RpoD [Oceanobacillus iheyensis HTE831]
gi|22777628|dbj|BAC13900.1| RNA polymerase sigma-43(-A) factor [Oceanobacillus iheyensis
HTE831]
Length = 380
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 143 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 202
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ E L ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIGEEMELGPDKV 262
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 263 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLDTLTDR 322
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 378
>gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length = 467
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 164/249 (65%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+LR + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 217 RRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 276
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P E
Sbjct: 277 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 336
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A+ ++ +++ + + P SLDQ IG + + + I D EA A D + ++
Sbjct: 337 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 396
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++
Sbjct: 397 DQLQSVLATLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 456
Query: 513 KRTKHLMQY 521
R++ L Y
Sbjct: 457 SRSQVLRDY 465
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 181/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ +RTIRLP H+ E ++K+ +++L + GR P+ E+A A L ++
Sbjct: 159 IRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIATALELHPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL + P SLD ++G NQ+ + E++ D E + ++ + + +++DL+ ++ L P+
Sbjct: 219 REYLLMARHPVSLDLRVGDNQDTELQELLED-ETASPDNYITSELLRQDLDTLISELTPQ 277
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R V+ RFGLEDG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 278 QRDVIILRFGLEDGTEMSLAKVGERLNLSRERVRQLEHQALAHLRRRQ 325
>gi|417971564|ref|ZP_12612487.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
gi|344044046|gb|EGV39727.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
Length = 494
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 3/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L E GR P +E+++ +S +++ + + P SLDQ IG + + + I
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 406
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA A D + +++ L+ VL+TL+ RE VV+ RFGL DG +TL EIG++ GV+R
Sbjct: 407 DSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTR 466
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIES KL++ R++ L Y
Sbjct: 467 ERIRQIESKTMSKLRHPSRSQVLRDY 492
>gi|145295815|ref|YP_001138636.1| RNA polymerase sigma factor [Corynebacterium glutamicum R]
gi|140845735|dbj|BAF54734.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 494
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 3/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L E GR P +E+++ +S +++ + + P SLDQ IG + + + I
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 406
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA A D + +++ L+ VL+TL+ RE VV+ RFGL DG +TL EIG++ GV+R
Sbjct: 407 DSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTR 466
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIES KL++ R++ L Y
Sbjct: 467 ERIRQIESKTMSKLRHPSRSQVLRDY 492
>gi|62390750|ref|YP_226152.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|41326088|emb|CAF20251.1| RNA POLYMERASE SIGMA 70 FACTOR [Corynebacterium glutamicum ATCC
13032]
Length = 494
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 3/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L E GR P +E+++ +S +++ + + P SLDQ IG + + + I
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 406
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA A D + +++ L+ VL+TL+ RE VV+ RFGL DG +TL EIG++ GV+R
Sbjct: 407 DSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTR 466
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIES KL++ R++ L Y
Sbjct: 467 ERIRQIESKTMSKLRHPSRSQVLRDY 492
>gi|407647061|ref|YP_006810820.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
gi|407309945|gb|AFU03846.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
Length = 457
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 201/347 (57%), Gaps = 20/347 (5%)
Query: 181 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 123 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 182
Query: 240 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 294
+ L E +RE +E+ P +RR N+ G K+ ++ +N
Sbjct: 183 EAGLYAAEKVRE-FTEQGEKLPV-------------AMRRDYNWIVRDGNRAKNHLLEAN 228
Query: 295 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 354
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 229 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 288
Query: 355 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414
+DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + +
Sbjct: 289 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 348
Query: 415 PRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRF 474
P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ RE VVR RF
Sbjct: 349 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRF 408
Query: 475 GLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
GL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 409 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 455
>gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 503
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 165/250 (66%), Gaps = 4/250 (1%)
Query: 276 LRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
LR+ L++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 252 LRQNLSWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 311
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 312 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 371
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D + +
Sbjct: 372 EELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLL 431
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
++ L+ VL+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++
Sbjct: 432 QDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 491
Query: 512 KKRTKHLMQY 521
R++ L Y
Sbjct: 492 PSRSQVLRDY 501
>gi|313884259|ref|ZP_07818025.1| RNA polymerase sigma factor RpoD [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620706|gb|EFR32129.1| RNA polymerase sigma factor RpoD [Eremococcus coleocola
ACS-139-V-Col8]
Length = 376
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 155/237 (65%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
L K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD +KGFKFSTYA W
Sbjct: 138 LAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYATW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L + GR P EE+ L ++
Sbjct: 198 WIRQAITRAIADQARTIRIPVHMVETINKLVRVQRNLLQDLGREPTPEEIGAEMDLPTEK 257
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ +L + P SL+ IG + + I D A + E ++E LE VLDTL
Sbjct: 258 VREILKISQEPVSLETPIGEEDDSHLGDFIEDEGAMSPESFTSSSLLREQLEDVLDTLTD 317
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DG ++TL+++G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 REENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 374
>gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893936|gb|EFG73705.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 503
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 215 LLNAEEEVELAKRIEAGLYATQLMAEMAERGDKLPA-AQ--------RRDMMWICRDGDR 265
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 266 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 325
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 326 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 385
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 386 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 445
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 446 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 501
>gi|365129836|ref|ZP_09341218.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620810|gb|EHL72057.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
Length = 362
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 125 AKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYATWW 184
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE +VK+ QL NG P +E+AE + + ++
Sbjct: 185 IRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHRNGHEPTADEIAEELDMPVDKV 244
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE L VL +L PR
Sbjct: 245 REIMRVAQEPVSLETPIGEEEDSHLGDFIPDEDAPVPAEAASHTLLKEQLSGVLKSLTPR 304
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGLEDGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 305 EEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDF 360
>gi|453382628|dbj|GAC82923.1| RNA polymerase sigma factor SigA [Gordonia paraffinivorans NBRC
108238]
Length = 527
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 185/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 239 LLNAEEEVELAKRIEAGLYATERLRRIME--SGEKISTAQ------------KRDLNWIS 284
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 285 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 344
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 345 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 404
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+
Sbjct: 405 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 464
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 465 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 524
Query: 521 Y 521
Y
Sbjct: 525 Y 525
>gi|81300366|ref|YP_400574.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
gi|81169247|gb|ABB57587.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
Length = 310
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 175/287 (60%), Gaps = 18/287 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 32 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 74
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++MI +N+RLV+S+AK YQG G+ DL+QEG GL R EKFD SKG+KFSTYA WW
Sbjct: 75 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 134
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++ ++++ QSRTIRLP H+ E ++++ ++L E GR P+ +E+AEA L + L
Sbjct: 135 IRQSMTRAIACQSRTIRLPVHLTERLSQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDL 194
Query: 406 HAVLLSPKAPRSLDQKI-GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+L + SLD + G + E+IADP D++ +E L+ L+ L P
Sbjct: 195 ETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAMQREQLDAWLEHLTP 254
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+ERQV+ RFGL DG TL EIG +M VSRER+RQ+E A RKL+N
Sbjct: 255 QERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRN 301
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 163/251 (64%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 218 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 277
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 278 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 337
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 338 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 397
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 398 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 457
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 458 HPSRSQVLRDY 468
>gi|363420387|ref|ZP_09308479.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
gi|359735629|gb|EHK84586.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
Length = 457
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 165/251 (65%), Gaps = 8/251 (3%)
Query: 277 RRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
RR LN+ +C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 207 RRDLNW--ICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ ++ +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 384
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 385 LQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 444
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 445 HPSRSQVLRDY 455
>gi|306820486|ref|ZP_07454120.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304551472|gb|EFM39429.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 538
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 301 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 360
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE G+S ++
Sbjct: 361 IRQAITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDKI 420
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A+ + ++E +E+VL TL R
Sbjct: 421 REIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPSEAAAYSLLREQIEQVLCTLTDR 480
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+V++ RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL+ K++ L Y
Sbjct: 481 ERRVLKLRFGLDDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDY 536
>gi|239616750|ref|YP_002940072.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
gi|239505581|gb|ACR79068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
Length = 405
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 167/247 (67%), Gaps = 1/247 (0%)
Query: 273 QRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G ++++IT+N+RLV+SIAK Y G G++ DL+QEG GL++ EKFD
Sbjct: 146 ERELARRAQKGDKKAREELITANLRLVVSIAKRYIGRGLSFLDLIQEGNIGLIKAVEKFD 205
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V + ++ E+G +P
Sbjct: 206 WKKGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKVNKVIREHLQEHGEYPTV 265
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+ + TG + +++ +L + K SL+ I ++ + + D E E+ IK +
Sbjct: 266 EELGKLTGKTPEKIEEILAASKETVSLESPISGDEESTMGDFVHDESIEKPEEAAIKMLL 325
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+E +++VLDTL+PRE V++ R+GL DG+ KTL+E+G+ V+RERIRQIE A RKL++
Sbjct: 326 REQIDEVLDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRH 385
Query: 512 KKRTKHL 518
R+K L
Sbjct: 386 PSRSKQL 392
>gi|409358547|ref|ZP_11236910.1| RNA polymerase sigma factor [Dietzia alimentaria 72]
Length = 462
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L + ER G T AQ +R+ R G+
Sbjct: 174 LLNAEEEVELAKRIEAGLYSTWHMAQVVER-GDKLTTAQ--------RRDFRWIERDGVR 224
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 225 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 284
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 285 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 344
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L VLDTL+ R
Sbjct: 345 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLRSVLDTLSER 404
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 405 EAGVVRLRFGLTDGLPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 460
>gi|402309575|ref|ZP_10828567.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
gi|400372231|gb|EJP25179.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
Length = 538
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 301 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 360
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE G+S ++
Sbjct: 361 IRQAITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDKI 420
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A+ + ++E +E+VL TL R
Sbjct: 421 REIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPSEAAAYSLLREQIEQVLCTLTDR 480
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+V++ RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL+ K++ L Y
Sbjct: 481 ERRVLKLRFGLDDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDY 536
>gi|56750024|ref|YP_170725.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
gi|56684983|dbj|BAD78205.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
Length = 316
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 175/287 (60%), Gaps = 18/287 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 38 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 80
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++MI +N+RLV+S+AK YQG G+ DL+QEG GL R EKFD SKG+KFSTYA WW
Sbjct: 81 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 140
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++ ++++ QSRTIRLP H+ E ++++ ++L E GR P+ +E+AEA L + L
Sbjct: 141 IRQSMTRAIACQSRTIRLPVHLTERLSQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDL 200
Query: 406 HAVLLSPKAPRSLDQKI-GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+L + SLD + G + E+IADP D++ +E L+ L+ L P
Sbjct: 201 ETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAMQREQLDAWLEHLTP 260
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
+ERQV+ RFGL DG TL EIG +M VSRER+RQ+E A RKL+N
Sbjct: 261 QERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRN 307
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 180/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q +++L +E L++ PT +WA + + EL+R ++ G
Sbjct: 39 LLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ +RTIRLP H+ E ++K+ +++L + GR P E+ A L ++
Sbjct: 159 IRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELAQQLGRSPTPAEIGSALELHPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL + P SLD ++G NQ+ + E++ D E+ + +D + + +++DL ++ L P+
Sbjct: 219 REYLLMARHPVSLDLRVGDNQDTELQELLED-ESASPDDYITGELLRQDLNNLMAELTPQ 277
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R V+ RFGLEDG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 278 QRDVLSLRFGLEDGHEMSLAKVGERLKLSRERVRQLEHQALAHLRRRQ 325
>gi|322373396|ref|ZP_08047932.1| RNA polymerase sigma factor RpoD [Streptococcus sp. C150]
gi|321278438|gb|EFX55507.1| RNA polymerase sigma factor RpoD [Streptococcus sp. C150]
Length = 369
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 159/241 (65%)
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
N + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGFKFST
Sbjct: 126 NGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFST 185
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE G+
Sbjct: 186 YATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMGM 245
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ ++ +L + P SL+ IG + + I D E D + ++E L++VLD
Sbjct: 246 TPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL++ R+K L
Sbjct: 306 TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKD 365
Query: 521 Y 521
+
Sbjct: 366 F 366
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 255
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+A+ L+ ++ +L + P SL+ IG ++ + I D +A D
Sbjct: 256 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVDAA 315
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L+ VL TL+ RE++V++ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 316 SFILLQEQLDSVLHTLSDREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTL 375
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 376 SKLRHPSRSQKLRDY 390
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 181/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ +RTIRLP H+ E ++K+ +++L + GR P+ E+A A L ++
Sbjct: 159 IRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIAAALELHPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
LL + P SLD ++G NQ+ + E++ D E + ++ + + +++DL+ ++ L P+
Sbjct: 219 REYLLMARHPVSLDLRVGDNQDTELQELLED-ETASPDNYITSELLRQDLDTLISELTPQ 277
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R V+ RFGLEDG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 278 QRDVIILRFGLEDGTEMSLAKVGERLNLSRERVRQLEHQALAHLRRRQ 325
>gi|257068601|ref|YP_003154856.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
gi|256559419|gb|ACU85266.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
Length = 433
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 184/311 (59%), Gaps = 7/311 (2%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A +E++L+ I+ L E ++ G +F
Sbjct: 128 ADPVKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDDSFRDKNGRLT 180
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
REL + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 181 KAGRELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 240
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 241 DYAKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 300
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ ++ +++ V + P SL +G + + + ++I D EA D +
Sbjct: 301 PEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTL 360
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E L VLDTL+ RE VV RFGLEDG+ KTL EIG++ GV+RERIRQIES KL+
Sbjct: 361 LQEQLHSVLDTLSEREAGVVSMRFGLEDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLR 420
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 421 HPSRSQVLRDY 431
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 255
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+A+ L+ ++ +L + P SL+ IG ++ + I D +A D
Sbjct: 256 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVDAA 315
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L+ VL TL+ RE++V++ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 316 SFILLQEQLDSVLHTLSDREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTL 375
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 376 SKLRHPSRSQKLRDY 390
>gi|326384463|ref|ZP_08206143.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
gi|326196808|gb|EGD54002.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
Length = 332
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 200/351 (56%), Gaps = 35/351 (9%)
Query: 186 AANVMSVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGI 239
A + ++ S + S R RP++ E D +D +R + LL A +E+ LS I
Sbjct: 2 AHSTIARPSEARSTRTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVDLSKAI 61
Query: 240 QDLLKLEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMI 291
+ GL + +L+ + +P ++ +Y IL ++ ++
Sbjct: 62 E-----AGLYAKHLLATKKRLTPA----------------KKRDYAILVREGEQARAHLL 100
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 101 EANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIS 160
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
+ ++DQSRTIRLP H+VE ++ R++L+ + GR +EE+A +G+ +++ ++
Sbjct: 161 RGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPAEKIADLMDH 220
Query: 412 PKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVR 471
+ P SLD +G ++ + I D EA +AE ++I + D+ VL TL+ RE QV+
Sbjct: 221 SRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETVVIANLLHSDIRSVLSTLDEREMQVIT 280
Query: 472 WRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
R+GL+DG+ +TL +IG G+SRER+RQIE KL+ R + L YA
Sbjct: 281 MRYGLDDGQPRTLDQIGRAFGLSRERVRQIEREVMGKLRQGDRAEKLRAYA 331
>gi|423348933|ref|ZP_17326589.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
gi|393703162|gb|EJD65363.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
Length = 593
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 11/311 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 290 SDPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHL---LDTSPAEDLTFQR------ 340
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+RELR N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 341 --RRELRWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 398
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 399 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPT 458
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+E+A + ++++ V + P SL +G + + + ++I D +A + +
Sbjct: 459 PDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSEAVAFSL 518
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E ++VL+TL+PRE V+R R+GLEDG+ KTL +IG + GV+RERIRQIES KL+
Sbjct: 519 LQEQFKQVLETLSPREAGVIRMRYGLEDGQPKTLDDIGHVYGVTRERIRQIESKTMAKLR 578
Query: 511 NKKRTKHLMQY 521
+ R++ L +
Sbjct: 579 HPARSQTLRDF 589
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 188/298 (63%), Gaps = 3/298 (1%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R + G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDREIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++ QSRTIRLP H+ E ++K+ +++L + GR E+AE L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLD K+G +Q+ + E++ D E + D + ++ ++ DL ++ L P
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPSDYVEQESLRRDLRNLMAELTP 262
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+++ V+ R+GL++G +L ++GE + +SRER+R++E A L ++R++ L +YA
Sbjct: 263 QQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHL--RRRSRLLAEYA 318
>gi|336392901|ref|ZP_08574300.1| RNA polymerase sigma factor RpoD [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 365
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 152/232 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 134 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + ++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKV 253
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 254 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDR 313
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K
Sbjct: 314 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 365
>gi|333919424|ref|YP_004493005.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481645|gb|AEF40205.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 327
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 161/250 (64%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 77 KRDLAYIVRDGQKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 136
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR
Sbjct: 137 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATEA 196
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A +G+ +++ +L + P SLD +G ++ + I D +A AE +I + +
Sbjct: 197 ELARESGIPQEKIQDLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSDATDAETAVITRLLH 256
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL+ RERQV+ +R+GLEDG+ +TL +IG + G+SRER+RQIE KL+
Sbjct: 257 SDIRTVLSTLDERERQVITFRYGLEDGQPRTLDQIGRIFGLSRERVRQIEREVMTKLRQG 316
Query: 513 KRTKHLMQYA 522
R + L YA
Sbjct: 317 DRAEKLRGYA 326
>gi|184155321|ref|YP_001843661.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum IFO 3956]
gi|227514580|ref|ZP_03944629.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
fermentum ATCC 14931]
gi|260662165|ref|ZP_05863061.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum 28-3-CHN]
gi|183226665|dbj|BAG27181.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum IFO 3956]
gi|227086991|gb|EEI22303.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
fermentum ATCC 14931]
gi|260553548|gb|EEX26440.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum 28-3-CHN]
Length = 380
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 202
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMDTQKV 262
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + MK+ LE VLDTL R
Sbjct: 263 RDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|443627733|ref|ZP_21112109.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443338746|gb|ELS53012.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 430
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 178/296 (60%), Gaps = 13/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ G +P A +L R + G +
Sbjct: 146 LLTAAEEVELARRVEAGLFAE-------EKLGNTPDLDSELAL------DLDRLVVMGRM 192
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 193 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 252
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 253 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLPPERV 312
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL + P SL +G ++ ++I D +A + + ++E LE VL TL R
Sbjct: 313 SEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGER 372
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 373 ERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGY 428
>gi|366089209|ref|ZP_09455682.1| RNA polymerase sigma factor RpoD [Lactobacillus acidipiscis KCTC
13900]
Length = 373
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 SKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPIPEEIGAEMDMPTEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +K+ LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDAEATSPADHAAYELLKKQLESVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 371
>gi|359771702|ref|ZP_09275148.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
gi|359311138|dbj|GAB17926.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
Length = 476
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 205/358 (57%), Gaps = 14/358 (3%)
Query: 167 RSRRQTERKARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
+S+ + + ++ AA+KA+ + V + R+ R + +D +R
Sbjct: 128 KSKDKDKEESDEPSAADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVA 187
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL-NYG 283
LL A EE+QL+ I+ L E +R ++ P QR L + G
Sbjct: 188 LLNAEEEVQLAKRIEAGLFAAERIRRIMEAGEKLPPA-----------QRRLYSEVARDG 236
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 237 NRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 296
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +
Sbjct: 297 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPE 356
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+
Sbjct: 357 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLS 416
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 417 EREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 474
>gi|380302336|ref|ZP_09852029.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium squillarum
M-6-3]
Length = 458
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 161/248 (64%)
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
REL + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD S
Sbjct: 209 RELAMIVEDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 268
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P EE
Sbjct: 269 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 328
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ ++ +++ V + P SL +G + + + ++I D EA D + ++E
Sbjct: 329 LAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQE 388
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L VLDTL+ RE VV RFGLEDG+ KTL EIG++ GV+RERIRQIES KL++
Sbjct: 389 QLHSVLDTLSEREAGVVSMRFGLEDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPS 448
Query: 514 RTKHLMQY 521
R++ L Y
Sbjct: 449 RSQVLRDY 456
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 6/387 (1%)
Query: 136 EQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSG 195
EQ D +PTHE+++ E + Q E + ++V +
Sbjct: 109 EQDAPADDVDFDPTHEDIEEDEFDAPTDLD-EDDIQEELGEEEDEDEVEDTSSVWDEEES 167
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSE 254
R+ R Q +D +R LL A +E+ L+ I+ L + E+
Sbjct: 168 VALRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQHRMDEMEKA 227
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
R G + A + +++R+LR G K+ ++ +N+RLV+S+AK Y G GM D
Sbjct: 228 RAEGD----KAAKLSPMEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 283
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 284 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 343
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVI 434
+++L + GR P +E+A+ ++ +++ + + P SLDQ IG + + + I
Sbjct: 344 GRIQRELLQDLGREPTPQELAKEMDITEEKVMEIQQYAREPISLDQTIGDEGDSQLGDFI 403
Query: 435 ADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVS 494
D EA A D + +++ L+ VL TL+ RE VVR RFGL DG +TL EIG++ GV+
Sbjct: 404 EDSEAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPRTLDEIGQVYGVT 463
Query: 495 RERIRQIESSAFRKLKNKKRTKHLMQY 521
RERIRQIES KL++ R++ L Y
Sbjct: 464 RERIRQIESKTMSKLRHPSRSQVLRDY 490
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 164/249 (65%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+LR + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 197 RRDLRWIIRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 256
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P E
Sbjct: 257 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 316
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A+ +S +++ + + P SLDQ IG + + + I D EA A D + ++
Sbjct: 317 ELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 376
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++
Sbjct: 377 DQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 436
Query: 513 KRTKHLMQY 521
R++ L Y
Sbjct: 437 SRSQVLRDY 445
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 170/270 (62%)
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
Q+ +K+E L +SE+ G PTF +WA A ++ +ELRR+L + C+ M++SN+ LVI
Sbjct: 1 QEHIKMEALFTSMSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVI 60
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
+A+ + G ++DL+QEG GL+ G EKFD S+GF+ STY WWI+ +VR++ +S
Sbjct: 61 KVARKFGLKGTTIEDLIQEGINGLLHGVEKFDTSRGFRLSTYVLWWIELSVRRASVKRSI 120
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
++P H+ + RV + R +++ E G P NEEVA G + +++H + P+SLD
Sbjct: 121 MCQVPMHLFDTHTRVLKTRARIFEERGTFPTNEEVATILGTTAQKVHLAANLMRHPKSLD 180
Query: 420 QKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479
+ N+ E++ DPE E++ + K +KE L+KVL+ L PRE++V+ R+G+ DG
Sbjct: 181 DNVPGCDNVTLLEILPDPEVESSLLVAEKALLKEQLDKVLNLLKPREKEVLTLRYGIGDG 240
Query: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKL 509
R +TL+E+ +SRER+RQIE A K+
Sbjct: 241 RDRTLEELSHHFNLSRERVRQIEKRALAKI 270
>gi|25028360|ref|NP_738414.1| RNA polymerase sigma factor [Corynebacterium efficiens YS-314]
gi|23493645|dbj|BAC18614.1| sigma factor SigA [Corynebacterium efficiens YS-314]
Length = 506
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 163/249 (65%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 256 KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 315
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L E GR P +
Sbjct: 316 SKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQ 375
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+++ +S +++ + + P SLDQ IG + + + I D EA A D + ++
Sbjct: 376 ELSKEMDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 435
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+ L+ VL+TL+ RE VV+ RFGL DG +TL EIG++ GV+RERIRQIES KL++
Sbjct: 436 DQLQDVLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 495
Query: 513 KRTKHLMQY 521
R++ L Y
Sbjct: 496 SRSQVLRDY 504
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 3/326 (0%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---RRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+++L E GR P +E+++ +S +++ + + P SLDQ IG + + + I
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 406
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D EA A D + +++ L+ VL+TL+ RE VV+ RFGL DG +TL EIG++ GV+R
Sbjct: 407 DSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTR 466
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIES KL++ R++ L Y
Sbjct: 467 ERIRQIESKTMSKLRHPSRSQVLRDY 492
>gi|354615678|ref|ZP_09033420.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353219969|gb|EHB84465.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 347
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 158/240 (65%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 107 GQVAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 166
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR NEE+A +G++
Sbjct: 167 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQKLGREATNEELAAESGIAE 226
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
++ +L + P SLD +G ++ + I D EA AE+ +I + +DL +VL TL
Sbjct: 227 HKVSNLLDHARDPVSLDMPVGSEEDAPLGDFIEDSEAADAENSVISGLLHDDLRRVLATL 286
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+ RE+ V+R R+GL+DG+ +TL +IG +SRER+RQIE KL++ +R L YA
Sbjct: 287 DEREQNVIRLRYGLDDGQPRTLDQIGRHFNLSRERVRQIEREVMAKLRHGERADKLRAYA 346
>gi|313140538|ref|ZP_07802731.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
gi|313133048|gb|EFR50665.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
Length = 500
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 191/315 (60%), Gaps = 20/315 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 302
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 303 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 362
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P +E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 363 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAV 422
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES
Sbjct: 423 AFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTM 482
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L +
Sbjct: 483 SKLRHPSRSQTLRDF 497
>gi|237785656|ref|YP_002906361.1| RNA polymerase sigma factor SigB [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758568|gb|ACR17818.1| RNA polymerase sigma factor B [Corynebacterium kroppenstedtii DSM
44385]
Length = 326
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 157/250 (62%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 77 KRDLKAVAKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 136
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 137 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 196
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+AE +G+ ++ +L + P SLD +G ++ + I D EA AE+ ++
Sbjct: 197 ELAEESGIDESKIDLLLKQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDAEEAVVASLRH 256
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL RE+ V+R RFGL+DG +TL +IG G+SRER+RQIE KL+
Sbjct: 257 SDIRTVLATLEKREQDVIRLRFGLDDGVPRTLDQIGREFGLSRERVRQIEREVMAKLRKG 316
Query: 513 KRTKHLMQYA 522
+R L YA
Sbjct: 317 ERADKLRSYA 326
>gi|365902695|ref|ZP_09440518.1| RNA polymerase sigma factor RpoD [Lactobacillus malefermentans KCTC
3548]
Length = 410
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 173 AKQQLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 232
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 233 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPAPEEIGAEMDMPTEKV 292
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 293 REILKIAQEPVSLETPIGEEDDSHLGDFIEDNDATSPADHAAYELLKEQLEGVLDTLTDR 352
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G + GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 353 EENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 408
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 178/318 (55%), Gaps = 23/318 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 140 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 183
Query: 267 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL
Sbjct: 184 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 243
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL
Sbjct: 244 IRAVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQ 303
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAE 443
+ GR P EE+ +S R+ + + P SL+ IG ++ + + I D +A
Sbjct: 304 DLGRDPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDAQAVVPA 363
Query: 444 DLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503
D ++E L +VLD L RER+V+ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 364 DAASFSMLQEQLTQVLDGLAERERKVIELRFGLVDGHPRTLEEVGREFGVTRERIRQIES 423
Query: 504 SAFRKLKNKKRTKHLMQY 521
KL++ R+ L Y
Sbjct: 424 KTLAKLRHPSRSSKLKDY 441
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 272
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+A+ L+ ++ +L + P SL+ IG ++ + I D +A D
Sbjct: 273 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVDAA 332
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L+ VL TL+ RE++V++ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 333 SFILLQEQLDSVLHTLSDREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTL 392
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 393 SKLRHPSRSQKLRDY 407
>gi|310287737|ref|YP_003938995.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
gi|309251673|gb|ADO53421.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
Length = 506
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 191/315 (60%), Gaps = 20/315 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 368
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P +E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 369 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAV 428
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES
Sbjct: 429 AFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTM 488
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L +
Sbjct: 489 SKLRHPSRSQTLRDF 503
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 187/303 (61%), Gaps = 23/303 (7%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L + L E ++E+ PT +LRR + +
Sbjct: 184 LLNAEEEVELAKRIEAGLYATQKLAE-MTEKGEKIPT-------------QLRRDMQW-- 227
Query: 285 LCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
+C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KF
Sbjct: 228 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 287
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+
Sbjct: 288 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 347
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKV 458
++ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ V
Sbjct: 348 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 407
Query: 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
L+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 408 LETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL 467
Query: 519 MQY 521
Y
Sbjct: 468 RDY 470
>gi|417749579|ref|ZP_12397971.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458801|gb|EGO37758.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 496
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 208 LLNAEEEVELAKRIEAGLYATQLMSEMAERGEKLPA-AQ--------RRDMMWICRDGDR 258
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 259 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 318
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 319 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 378
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 379 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 438
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 439 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 494
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 272
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+A+ L+ ++ +L + P SL+ IG ++ + I D +A D
Sbjct: 273 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVDAA 332
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L+ VL TL+ RE++V++ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 333 SFILLQEQLDSVLHTLSDREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTL 392
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 393 SKLRHPSRSQKLRDY 407
>gi|407983277|ref|ZP_11163934.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
gi|407375170|gb|EKF24129.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
Length = 527
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 182/300 (60%), Gaps = 17/300 (5%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY--- 282
LL A EE++L+ I+ L L +E+ PT +LRR +
Sbjct: 239 LLNAEEEVELAKRIEAGLYATHLLNQAAEKGEKLPT-------------QLRRDYQWISR 285
Query: 283 -GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 286 DGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 345
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 346 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 405
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
+++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+T
Sbjct: 406 PEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLET 465
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
L+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 466 LSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 525
>gi|359419328|ref|ZP_09211286.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
gi|358244735|dbj|GAB09355.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
Length = 508
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 164/250 (65%), Gaps = 1/250 (0%)
Query: 273 QRELRRRLNY-GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
QR R + Y G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 257 QRRALREVAYDGTKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 316
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 317 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 376
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+A+ ++ +++ + + P SLDQ IG + + + I D EA A D + +
Sbjct: 377 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAIVAVDAVSFTLL 436
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
++ L+ VL+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++
Sbjct: 437 QDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 496
Query: 512 KKRTKHLMQY 521
R++ L Y
Sbjct: 497 PSRSQVLRDY 506
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 184/300 (61%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELDLEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D + + + ++ +++DL +L L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLED-SGVSPDTFITQELLRQDLANLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL DG+ +L +IG+ M +SRER+RQ+E A L ++R ++ +Y + S
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHL--RRRRANVKEYIVAS 328
>gi|408500874|ref|YP_006864793.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
gi|408465698|gb|AFU71227.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
Length = 474
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 190/312 (60%), Gaps = 20/312 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + E
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGE--------------- 216
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 217 GMDFKRRRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 276
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 277 VEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 336
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P +E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 337 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAV 396
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES
Sbjct: 397 AFSLLQEQFQQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTM 456
Query: 507 RKLKNKKRTKHL 518
KL++ R++ L
Sbjct: 457 SKLRHPSRSQTL 468
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 272
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P+ EE+A+ L+ ++ +L + P SL+ IG ++ + I D +A D
Sbjct: 273 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVDAA 332
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L+ VL TL+ RE++V++ RFGL DG +TL+E+G GV+RERIRQIES
Sbjct: 333 SFILLQEQLDSVLHTLSDREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTL 392
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 393 SKLRHPSRSQKLRDY 407
>gi|332295554|ref|YP_004437477.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermodesulfobium
narugense DSM 14796]
gi|332178657|gb|AEE14346.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermodesulfobium
narugense DSM 14796]
Length = 356
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 159/238 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+ +N+RLV+SIAK Y G+ DL+QEG GL+R EKFD KG+KFSTYA WW
Sbjct: 119 AKKKLAEANLRLVVSIAKKYTKRGLLFLDLIQEGNMGLLRAVEKFDYRKGYKFSTYATWW 178
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QAV ++++DQ+RTIR+P HMVE + K+ + L + R P +EE+AE ++++++
Sbjct: 179 IRQAVTRAIADQARTIRIPVHMVETINKYKKTVRNLSQQLSRKPTDEEIAEKMEVNVEKI 238
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
H + + P S++ IG +++ + IAD + + + + +KEDLE+V+ L PR
Sbjct: 239 HEIKRISQEPISIETPIGKDEDSHLGDFIADESISSPMEAVTYRLLKEDLEEVIKDLQPR 298
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
ER VVR RFGL DG +TL+E+G+ GV+RERIRQIE+ A RKL++ R++ L Y +
Sbjct: 299 ERDVVRLRFGLVDGHARTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSRKLRDYLV 356
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 189/298 (63%), Gaps = 3/298 (1%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEKFDPSKGYKFSTYAYW 143
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++ QSRTIRLP H+ E ++K+ +++L + GR E+AE L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLD K+G +Q+ + E++ D E + D + ++ ++ DL ++ L P
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPSDYVEQESLRRDLRNLMAELTP 262
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
+++ V+ R+GL++G +L ++GE + +SRER+R++E A L ++R++ L +YA
Sbjct: 263 QQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHL--RRRSRLLAEYA 318
>gi|410666950|ref|YP_006919321.1| RNA polymerase sigma factor RpoD [Thermacetogenium phaeum DSM
12270]
gi|409104697|gb|AFV10822.1| RNA polymerase sigma factor RpoD [Thermacetogenium phaeum DSM
12270]
Length = 361
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 112 ELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 171
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 172 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELGRDPMPEE 231
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ + ++R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 232 IAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASFILLKE 291
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL PRER V+R RFGLEDG+ +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 292 QLEEVLETLTPRERDVLRLRFGLEDGKARTLEEVGQKFKVTRERIRQIEAKALRKLRHPS 351
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 352 RSKKLKDY 359
>gi|421733382|ref|ZP_16172488.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
gi|407078624|gb|EKE51424.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
Length = 506
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 191/315 (60%), Gaps = 20/315 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 368
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P +E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 369 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAV 428
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES
Sbjct: 429 AFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTM 488
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L +
Sbjct: 489 SKLRHPSRSQTLRDF 503
>gi|311064624|ref|YP_003971349.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|421736043|ref|ZP_16174897.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
gi|310866943|gb|ADP36312.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|407296670|gb|EKF16198.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
Length = 506
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 191/315 (60%), Gaps = 20/315 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 368
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P +E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 369 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAV 428
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES
Sbjct: 429 AFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTM 488
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L +
Sbjct: 489 SKLRHPSRSQTLRDF 503
>gi|227513300|ref|ZP_03943349.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
buchneri ATCC 11577]
gi|227083501|gb|EEI18813.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
buchneri ATCC 11577]
Length = 389
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 152 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 211
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 212 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 271
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 272 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDR 331
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 332 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 387
>gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococcus equi 103S]
gi|325672677|ref|ZP_08152373.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|311888773|emb|CBH48085.1| sigma-70 factor SigA [Rhodococcus equi 103S]
gi|325556554|gb|EGD26220.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 459
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 182/297 (61%), Gaps = 11/297 (3%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L + E+ + SPT D+R L G
Sbjct: 171 LLNAEEEVELAKRIEAGLFATHKMNEMAEKGEKPSPT----------DRRNLNWITRDGN 220
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 221 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 280
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 281 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 340
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+
Sbjct: 341 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSE 400
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 401 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 457
>gi|289450258|ref|YP_003475183.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184805|gb|ADC91230.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 353
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 157/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD KGFKFSTYA WW
Sbjct: 116 AKDRLCEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVDKFDYEKGFKFSTYATWW 175
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE+A+ G+S +++
Sbjct: 176 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPEVEELAQEMGISPEKV 235
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SL++ IG ++ + I D +A + D +KE L ++L L PR
Sbjct: 236 REIQKISQEPVSLEKPIGEEEDSHLGDFIPDDDAPSPADQAAFTLLKEQLLEILSGLTPR 295
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G V+RERIRQIE+ A RK+++ R+K L Y
Sbjct: 296 EEKVLRLRFGLDDGRSRTLEEVGREFNVTRERIRQIEAKALRKMRHPSRSKKLKDY 351
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 186/322 (57%), Gaps = 3/322 (0%)
Query: 203 PSVQEVDYSDPL--RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
PS E SD L YL R+ T EE+ L+ IQ L ++G RE L+ R G
Sbjct: 22 PSRSEAQGSDDLVDLYLNEIGRIPRV-TPEEEIHLARRIQAKLAIDGAREELAMRLGRPS 80
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
AA G D + L G+ + K+I +N+RLV+SIAK Y G + DL+QEG
Sbjct: 81 PEEDVAAFMGRDPKALIEATRQGLWAQRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGN 140
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD KG++FSTYA WWI+Q++ +++++Q+RTIRLP HMVE +V+ +
Sbjct: 141 IGLMRATEKFDPEKGYRFSTYATWWIRQSITRAIANQARTIRLPIHMVEKVRKVRREMRM 200
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAE 440
E GR P+ +E+A + +K+L + + P SLD +G ++ E+I D AE
Sbjct: 201 ATLELGRRPSEDELASRLAIKVKKLRTIQEVSRQPVSLDMPVGSEGDISLGEMIEDGTAE 260
Query: 441 TAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 500
D L++K + +L ++ L P ER+V+ RFGL+ TL+E+GE ++RERIRQ
Sbjct: 261 RPFDELVQKALASELYAAMNVLKPVEREVLALRFGLKGEEGLTLREVGERFDLTRERIRQ 320
Query: 501 IESSAFRKLKNKKRTKHLMQYA 522
IES A RKL+ KR + L QY
Sbjct: 321 IESEALRKLRRSKRKQILQQYV 342
>gi|347525279|ref|YP_004832027.1| RNA polymerase sigma factor RpoD [Lactobacillus ruminis ATCC 27782]
gi|345284238|gb|AEN78091.1| RNA polymerase sigma factor RpoD [Lactobacillus ruminis ATCC 27782]
Length = 373
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P EE+ L +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPIPEEIGAEMNLPTEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D A + D + +KE +E VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDHAATSPADHAAYELLKEQIESVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 371
>gi|227510293|ref|ZP_03940342.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227524444|ref|ZP_03954493.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
hilgardii ATCC 8290]
gi|227088403|gb|EEI23715.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
hilgardii ATCC 8290]
gi|227189945|gb|EEI70012.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 389
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 152 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 211
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 212 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 271
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VLDTL R
Sbjct: 272 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDR 331
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 332 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 387
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 194/329 (58%), Gaps = 19/329 (5%)
Query: 200 RKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
R RP + E D +D +R + LLTA +E++L+ I+ L + L +
Sbjct: 14 RVRPELTEADLDAQSPAADLVRVYLNGIGRTALLTAEDEVELAKRIEAGLYAQHLLDT-K 72
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
+R S +R+L + G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 73 KRLSASK------------KRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLL 120
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE +
Sbjct: 121 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK 180
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEV 433
+ R++L+ + GR + E+A +G+ +++ ++ + P SLD +G ++ +
Sbjct: 181 LARIRRELHQQLGREATDAELAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEAPLGDF 240
Query: 434 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 493
I D EA +AE +I M D+ VL TL+ RE+QV+R R+GL+DG+ +TL +IG+L G+
Sbjct: 241 IEDAEAASAESAVISTLMHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGL 300
Query: 494 SRERIRQIESSAFRKLKNKKRTKHLMQYA 522
SRER+RQIE KL+N +R L YA
Sbjct: 301 SRERVRQIEREVMSKLRNGERADRLRAYA 329
>gi|296112139|ref|YP_003622521.1| RNA polymerase sigma factor [Leuconostoc kimchii IMSNU 11154]
gi|339490649|ref|YP_004705154.1| RNA polymerase sigma factor [Leuconostoc sp. C2]
gi|295833671|gb|ADG41552.1| RNA polymerase sigma factor [Leuconostoc kimchii IMSNU 11154]
gi|338852321|gb|AEJ30531.1| RNA polymerase sigma factor [Leuconostoc sp. C2]
Length = 432
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 164/253 (64%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ + +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEINIAKRIEDGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ ++E LE VL+TL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLREQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|350566296|ref|ZP_08934981.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
gi|348662922|gb|EGY79550.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
Length = 370
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 159/237 (67%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
L K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD +KGFKFSTYA W
Sbjct: 132 LAKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVEKFDYTKGFKFSTYATW 191
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P+ EE+A+ L +++
Sbjct: 192 WIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELGRDPSPEEIAQEMSLDVEK 251
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SL+ IG ++ + I D E + D +KE LE VL+TL
Sbjct: 252 VREIQKIAQEPVSLETPIGEEEDSHLGDFIPDEEILSPSDAATFTLLKEQLETVLETLTE 311
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE++V+ RFGLEDGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 REKKVLTLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDF 368
>gi|313123888|ref|YP_004034147.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280451|gb|ADQ61170.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 373
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 166/254 (65%), Gaps = 1/254 (0%)
Query: 269 AGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+G ++ +L +R+ G KD++ ++N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 118 SGDEEVQLAKRIEAGDQEAKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAV 177
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
+KFD GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 178 DKFDYQLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGR 237
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+A L +K++ VL + P SL+ IG + + I D +A + E
Sbjct: 238 DPEPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAA 297
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +K+ L +VLDTL RE V+R RFGL+DG +TL+E+G + GV+RERIRQIE+ A R
Sbjct: 298 SEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALR 357
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+ L +
Sbjct: 358 KLRHPSRSNQLRDF 371
>gi|358445404|ref|ZP_09156014.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608850|emb|CCE54263.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 472
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 197/341 (57%), Gaps = 11/341 (3%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQ 240
A A+V +T R+ R + +D +R LL A +E+ L+ AG+
Sbjct: 137 AGASVWDEDESATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 196
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
+L+ + +++E A + +R+LR G K+ ++ +N+RLV+S
Sbjct: 197 AQHRLDDMERLIAEGDAA-------AKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVS 249
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 250 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 309
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HMVE ++ +++L + GR P +E+A+ ++ +++ + + P SLDQ
Sbjct: 310 IRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQ 369
Query: 421 KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGR 480
IG + + + I D EA A D + +++ L+ VL TL+ RE VVR RFGL DG
Sbjct: 370 TIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGM 429
Query: 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 430 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 470
>gi|270283843|ref|ZP_05965086.2| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
gi|270277549|gb|EFA23403.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
Length = 485
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 192/312 (61%), Gaps = 14/312 (4%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + SE +FA+
Sbjct: 184 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----SFAR----- 233
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 234 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 290
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 291 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREP 350
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKK 449
+E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 351 TPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDPEFGDLIEDTDAIAPSDAVAFS 410
Query: 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES KL
Sbjct: 411 LLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSKL 470
Query: 510 KNKKRTKHLMQY 521
++ R++ L +
Sbjct: 471 RHPSRSQTLRDF 482
>gi|281417615|ref|ZP_06248635.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum JW20]
gi|281409017|gb|EFB39275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum JW20]
Length = 358
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 121 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWW 180
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+ EE+A+ + ++++
Sbjct: 181 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKV 240
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE L VLDTL PR
Sbjct: 241 REIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPR 300
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 301 EEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDY 356
>gi|118465794|ref|YP_882772.1| RNA polymerase sigma factor [Mycobacterium avium 104]
gi|254776035|ref|ZP_05217551.1| RNA polymerase sigma factor [Mycobacterium avium subsp. avium ATCC
25291]
gi|118167081|gb|ABK67978.1| sigma factor MysA [Mycobacterium avium 104]
Length = 496
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 208 LLNAEEEVELAKRIEAGLYATQLMSEMAERGEKLPA-AQ--------RRDMMWICRDGDR 258
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 259 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 318
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 319 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 378
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 379 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 438
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 439 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 494
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 185/307 (60%), Gaps = 23/307 (7%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ----------------------REL 276
IQ LL+LE L++ + PT +WA AAG+ Q +EL
Sbjct: 55 IQRLLELEQLQQREANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKEL 114
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
++RL G +D+MI +N+RLV+++AK YQ G+ L DLVQEG GL R EKFD ++GF
Sbjct: 115 QKRLREGRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGF 174
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+ ++++ + GR + +++
Sbjct: 175 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKVQQEIATNEGRIASISDLSR 234
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
A G+S + + L+ SL+ ++G +Q+ + +++ D A T E L K + DLE
Sbjct: 235 ALGISEETVRLTLMRVPRSVSLETRVGKDQDTQLGDLLEDCHA-TPEQTLTKNSLHSDLE 293
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
++L L RE +V+R RFGLED TL EIGE MG+SRER+RQIE+ A KL+ +R
Sbjct: 294 ELLGELTAREAEVIRRRFGLEDDTPLTLAEIGETMGLSRERVRQIETRALLKLRQPQRRS 353
Query: 517 HLMQYAI 523
+ Y +
Sbjct: 354 KVRDYIL 360
>gi|335996715|ref|ZP_08562632.1| RNA polymerase sigma factor RpoD [Lactobacillus ruminis SPM0211]
gi|335351785|gb|EGM53276.1| RNA polymerase sigma factor RpoD [Lactobacillus ruminis SPM0211]
Length = 373
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P EE+ L +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPIPEEIGAEMNLPTEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D A + D + +KE +E VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDHAATSPADHAAYELLKEQIESVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 371
>gi|429730663|ref|ZP_19265309.1| Sigma-70 region 2 [Corynebacterium durum F0235]
gi|429147101|gb|EKX90131.1| Sigma-70 region 2 [Corynebacterium durum F0235]
Length = 329
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 183/312 (58%), Gaps = 12/312 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA +E+QL+ I+ L E L E E T A
Sbjct: 29 ADLVRVYLNGIGKTALLTAEDEVQLAQTIEVGLYAEHLLENSEEPL----TRAM------ 78
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 79 --KRDLKVLARQGKHARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR
Sbjct: 137 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQNLGREAT 196
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
NEE+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 197 NEELAEESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAEAAVVASL 256
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
D+ VL +L RE++V+ R+GL+DG +TL +IG G+SRER+RQIE KL+
Sbjct: 257 RHSDIRSVLASLEVREQEVISLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMSKLR 316
Query: 511 NKKRTKHLMQYA 522
+ +R + L +YA
Sbjct: 317 DGERAEKLREYA 328
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 182/297 (61%), Gaps = 11/297 (3%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E LR E +P +R+LR + G
Sbjct: 147 LLNAEEEVELAKRIEAGLYAAERLRRAEDESEKLTPQM----------RRDLRWIVRDGE 196
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 197 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 256
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 257 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 316
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLDQ IG + + + I D EA A D + +++ L+ VL TL+
Sbjct: 317 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSE 376
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 377 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 433
>gi|256004390|ref|ZP_05429371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 2360]
gi|385778673|ref|YP_005687838.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
thermocellum DSM 1313]
gi|419722973|ref|ZP_14250109.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum AD2]
gi|419724679|ref|ZP_14251738.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum YS]
gi|255991674|gb|EEU01775.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 2360]
gi|316940353|gb|ADU74387.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 1313]
gi|380771898|gb|EIC05759.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum YS]
gi|380781030|gb|EIC10692.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum AD2]
Length = 358
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 109 ELAHRMEQGDAEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 168
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+ EE
Sbjct: 169 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEE 228
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ + ++++ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 229 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKE 288
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L VLDTL PRE +V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 289 QLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS 348
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 349 RSKKLKDY 356
>gi|407275560|ref|ZP_11104030.1| RNA polymerase sigma factor [Rhodococcus sp. P14]
Length = 452
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 165/251 (65%), Gaps = 8/251 (3%)
Query: 277 RRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
RR LN+ +C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 202 RRDLNW--ICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 259
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 260 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 319
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ ++ +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 320 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 379
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 380 LQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 439
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 440 HPSRSQVLRDY 450
>gi|323340800|ref|ZP_08081052.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
ruminis ATCC 25644]
gi|417974204|ref|ZP_12615026.1| RNA polymerase sigma factor RpoD [Lactobacillus ruminis ATCC 25644]
gi|323091923|gb|EFZ34543.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
ruminis ATCC 25644]
gi|346329429|gb|EGX97726.1| RNA polymerase sigma factor RpoD [Lactobacillus ruminis ATCC 25644]
Length = 373
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P EE+ L +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPIPEEIGAEMNLPTEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D A + D + +KE +E VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDHAATSPADHAAYELLKEQIESVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 371
>gi|225377779|ref|ZP_03755000.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
gi|225210363|gb|EEG92717.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
Length = 426
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 183/314 (58%), Gaps = 2/314 (0%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A EE++L+ ++ + +L R +
Sbjct: 113 VSIEDPVRMYLKEIGKVPLLSAEEEIELAKNMEAGAVAKEKIAILKSREEKATEEELAEI 172
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ + L++ L+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 173 KEEI--KNLQKDLDAGDEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 230
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 231 EKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR 290
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P+ EE+A + ++R+ +L + P SL+ IG ++ + I D D
Sbjct: 291 EPSPEEIAAEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAA 350
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+KE LE+VL TL RE++V+ RFGLEDGR +TL+E+G+ V+RERIRQIE+ A R
Sbjct: 351 FTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALR 410
Query: 508 KLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 411 KLRHPSRSRKLKDY 424
>gi|377556058|ref|ZP_09785781.1| RNA polymerase sigma factor [Lactobacillus gastricus PS3]
gi|376168796|gb|EHS87524.1| RNA polymerase sigma factor [Lactobacillus gastricus PS3]
Length = 379
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 130 ELALRIEQGDEVAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYR 189
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE
Sbjct: 190 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEE 249
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ + +++ +L + P SL+ IG + + I D +A + + + MK+
Sbjct: 250 IGAEMDMETQKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYEMMKK 309
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 310 QLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 369
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 370 RSKQLKDF 377
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 190/316 (60%), Gaps = 13/316 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW-AAAA 269
+DP++ LL A +E++L+ I+ L E E LS+ G W A
Sbjct: 238 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---ERLSKEFGEG-----WDKTKA 289
Query: 270 GVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
++R L R L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 290 SAEERRLYRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIR 349
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ +
Sbjct: 350 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDL 409
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR P EE+A+ ++ +++ V + P SL +G + + + ++I D EA D
Sbjct: 410 GREPTPEELAKELDMTPEKVVEVQKYGREPISLSTPLGEDGDSEFGDLIEDSEAVVPADA 469
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+ ++E L +VLDTL+ RE VV RFGL+DG+ KTL EIG++ GV+RERIRQIES
Sbjct: 470 VSFTLLQEQLHQVLDTLSEREAGVVSMRFGLQDGQPKTLDEIGKVYGVTRERIRQIESKT 529
Query: 506 FRKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 530 MSKLRHPSRSQVLRDY 545
>gi|290960625|ref|YP_003491807.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
gi|260650151|emb|CBG73267.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
Length = 387
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 182/299 (60%), Gaps = 19/299 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR---ELRRRLNY 282
LLTA EE++L+ ++ L E ER G A+G+D R +L R +
Sbjct: 103 LLTAVEEVELARRVEAGLFAE-------ERLG---------TASGLDTRLALDLDRLVVM 146
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA
Sbjct: 147 GRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 206
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P +EVA L+
Sbjct: 207 TWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPDEVAAHLDLAP 266
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTL 462
+R+ VL + P SL +G ++ ++I D +A + + ++E LE VL TL
Sbjct: 267 ERVSEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTL 326
Query: 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 327 GERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGY 385
>gi|452960731|gb|EME66046.1| RNA polymerase sigma factor [Rhodococcus ruber BKS 20-38]
Length = 451
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 165/251 (65%), Gaps = 8/251 (3%)
Query: 277 RRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
RR LN+ +C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 201 RRDLNW--ICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 258
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 259 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 318
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ ++ +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 319 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 378
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 379 LQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 438
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 439 HPSRSQVLRDY 449
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 163/251 (64%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 212 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 271
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 272 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 331
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 332 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 391
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 392 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 451
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 452 HPSRSQVLRDY 462
>gi|125973412|ref|YP_001037322.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum ATCC
27405]
gi|125713637|gb|ABN52129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum ATCC 27405]
Length = 358
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 121 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWW 180
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+ EE+A+ + ++++
Sbjct: 181 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKV 240
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D +A + +KE L VLDTL PR
Sbjct: 241 REIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPR 300
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 301 EEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDY 356
>gi|425043807|ref|ZP_18448009.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 511]
gi|403017850|gb|EJY30573.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 511]
Length = 369
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L +++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 251
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + + + +KE LE VLDTL R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDR 311
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFVVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|357009815|ref|ZP_09074814.1| SigA [Paenibacillus elgii B69]
Length = 370
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 1/254 (0%)
Query: 269 AGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+G D+ EL R+ G K ++ +N+RLV+SIA+ Y G GM DL+QEG GL++
Sbjct: 115 SGDDEIELAERIQRGDEEAKRRLAEANLRLVVSIARRYVGRGMLFLDLIQEGNMGLIKAV 174
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 175 EKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGR 234
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
EEVA+ L+ ++ ++ + P SL+ IG + + I D EA D
Sbjct: 235 EATPEEVAKEMDLTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDQEALAPADAAA 294
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 295 YELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 354
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 355 KLRHPSRSKRLKDF 368
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 195/363 (53%), Gaps = 39/363 (10%)
Query: 179 TRAAEKAAANVMSVKSGSTSR----RKRPSVQEVDYS------DPLRYLRATTSSSRLLT 228
+ A+ A A + S K SR R R + +D S DP+R LLT
Sbjct: 97 VKVAKMADAEMASEKPKKKSRVRTARSRNRARGIDASTVMLTGDPVRMYLKEIGKVDLLT 156
Query: 229 ANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRR 278
A +E M++ AG++ KLE AA AG + R L R
Sbjct: 157 AADEVDLAMKIEAGLEASNKLE-------------------AADAGEIELTRAEMRRLTR 197
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL+R EKFD KGFKF
Sbjct: 198 VEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYEKGFKF 257
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+
Sbjct: 258 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPTPEEIGAEM 317
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKV 458
+S R+ + + P SL+ IG ++ + + I D +A + ++E L +V
Sbjct: 318 DMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSQAVVPPEAASFSMLQEQLTQV 377
Query: 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
LD+L RER+V+ RFGL DG +TL+E+G GV+RERIRQIES KL++ R+ L
Sbjct: 378 LDSLADRERKVIELRFGLVDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKL 437
Query: 519 MQY 521
Y
Sbjct: 438 KDY 440
>gi|300812189|ref|ZP_07092631.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496825|gb|EFK31905.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 373
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 166/254 (65%), Gaps = 1/254 (0%)
Query: 269 AGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+G ++ +L +R+ G KD++ ++N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 118 SGDEEVQLAKRIEAGDQEAKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAV 177
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
+KFD GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 178 DKFDYQLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGR 237
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+A L +K++ VL + P SL+ IG + + I D +A + E
Sbjct: 238 DPEPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAA 297
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +K+ L +VLDTL RE V+R RFGL+DG +TL+E+G + GV+RERIRQIE+ A R
Sbjct: 298 SEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALR 357
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+ L +
Sbjct: 358 KLRHPSRSNQLRDF 371
>gi|296117756|ref|ZP_06836340.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
gi|295969487|gb|EFG82728.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
Length = 471
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 194/337 (57%), Gaps = 3/337 (0%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A A+V +T R+ R Q +D +R LL A +E+ L+ I+ L
Sbjct: 136 AGASVWDEDESATLRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 195
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKN 304
+ + + A+ + A +R+LR G K+ ++ +N+RLV+S+AK
Sbjct: 196 AQHRMDEMERLTAEGDAAAKLSPAQ---KRDLRWIARDGRKAKNHLLEANLRLVVSLAKR 252
Query: 305 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 364
Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P
Sbjct: 253 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 312
Query: 365 FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGI 424
HMVE ++ +++L + GR P +E+A+ ++ +++ + + P SLDQ IG
Sbjct: 313 VHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIGD 372
Query: 425 NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTL 484
+ + + I D EA A D + +++ L+ VL TL+ RE VVR RFGL DG +TL
Sbjct: 373 EGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPRTL 432
Query: 485 QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 433 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 469
>gi|227499199|ref|ZP_03929334.1| RNA polymerase [Acidaminococcus sp. D21]
gi|352685517|ref|YP_004897502.1| RNA polymerase [Acidaminococcus intestini RyC-MR95]
gi|226904646|gb|EEH90564.1| RNA polymerase [Acidaminococcus sp. D21]
gi|350280172|gb|AEQ23362.1| RNA polymerase [Acidaminococcus intestini RyC-MR95]
Length = 582
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 167/255 (65%), Gaps = 5/255 (1%)
Query: 272 DQRELRRRLNYGILCKDK----MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
D++ R L+ +C +K + +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 326 DRKRFNRVLHRAAMCGEKAKKALSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 385
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 386 EKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGR 445
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+A+ + ++R+ + + P SL+ IG ++ + I D EA + +
Sbjct: 446 EPTPEEIAQEMDVPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQEAPSPAEAAS 505
Query: 448 KKFMKEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E L KVL + L+PRER+V+ RFGL DGR +TL+E+G+ GV+RERIRQIE+ A
Sbjct: 506 YTLLQEQLGKVLQEHLSPRERRVLELRFGLLDGRTRTLEEVGQYFGVTRERIRQIEAKAL 565
Query: 507 RKLKNKKRTKHLMQY 521
RKL++ KR+K L ++
Sbjct: 566 RKLRSPKRSKPLKEF 580
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 183/288 (63%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L++R G P+ +WA ++++ L++ L G
Sbjct: 32 LLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEEKALQKALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR E+A+ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQSLGRSATPAEIAQELEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D + + + + ++ +++DL ++ L P+
Sbjct: 212 REFLSIARQPISLDVRVGDNQDTELSELLED-QGVSPDIYITQELLRQDLSNLMAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R V+ RFGLEDG+ +L +IG+ + +SRER+RQ+E A +L+ ++
Sbjct: 271 QRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQALAQLRRRR 318
>gi|443673287|ref|ZP_21138355.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414102|emb|CCQ16693.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 476
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 184/297 (61%), Gaps = 11/297 (3%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L +E +RE S G AQ +R++ G
Sbjct: 188 LLNAEEEVELAKRIEAGLFAVEKMRE--SADKGEKLPVAQ--------RRDMTWICRDGN 237
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 238 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 297
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 298 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 357
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+
Sbjct: 358 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSE 417
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 418 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 474
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 199/331 (60%), Gaps = 32/331 (9%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ +N Q + L++ ++E L+ G P+ +WA+AAGV+
Sbjct: 89 RYLRM-----RIVLSNAAKQGDEILIPYLRVIEVQERLASELGHRPSIERWASAAGVEVL 143
Query: 275 ELRRRLNYG----------------------ILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL++ L G + K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 ELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKP 430
++K+A++++ E GR P E++A+ ++ ++ VLL + PR SL+ K+G +++ +
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAQELEMTPTQVREVLL--RVPRSVSLETKVGKDKDTEL 321
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
E++ + + T ED+L+++ ++ DL+ +L L RER V+ RFGL DG+ +L EIG
Sbjct: 322 GELL-ETDCVTPEDMLMRESLQRDLQHLLADLTSRERDVILMRFGLADGQPYSLAEIGRA 380
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ +SRER+RQIES A +KL+ KR + Y
Sbjct: 381 LDLSRERVRQIESKALQKLRQPKRRNLIRDY 411
>gi|451944386|ref|YP_007465022.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903773|gb|AGF72660.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 329
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 159/251 (63%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLAKEGNKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR NE
Sbjct: 139 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E++E +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 199 ELSEESGIDESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDAEATDAETAVVASLRH 258
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
D+ VL TL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 259 SDIRSVLGTLEQREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMSKLRDG 318
Query: 513 KRTKHLMQYAI 523
+R L +YA+
Sbjct: 319 ERAARLREYAL 329
>gi|427390144|ref|ZP_18884550.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733159|gb|EKU95965.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 585
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 162/248 (65%)
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
RELR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GLVR EKFD +
Sbjct: 336 RELRIIARDGRSAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLVRAVEKFDYT 395
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQSRTIR+P HMVE ++ ++Q+ + GR P EE
Sbjct: 396 KGYKFSTYATWWIRQAITRAMADQSRTIRIPVHMVEVINKLARVQRQMLQDLGREPTTEE 455
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A ++ +++ V + P SL +G + + + ++I D EA +D + +KE
Sbjct: 456 LAHELDMTEEKVVEVQRYGREPISLHTPLGEDGDSEFGDLIEDSEAVHPDDAVGFTLLKE 515
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L++VLDTL+ RE VV RFGL DG+ KTL EIG++ GV+RERIRQIES KL++
Sbjct: 516 QLQQVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPS 575
Query: 514 RTKHLMQY 521
R++ L Y
Sbjct: 576 RSQVLRDY 583
>gi|326693497|ref|ZP_08230502.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc argentinum KCTC 3773]
gi|339451146|ref|ZP_08654516.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc lactis KCTC 3528]
Length = 432
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 164/253 (64%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ + +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEINIAKRIEAGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ +++ LE VL+TL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLRDQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|354558027|ref|ZP_08977284.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Desulfitobacterium metallireducens DSM 15288]
gi|353549701|gb|EHC19142.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Desulfitobacterium metallireducens DSM 15288]
Length = 389
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 140 ELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYQ 199
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 200 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQELGREPIPEE 259
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE + ++R+ ++ + P SL+ IG ++ + I D +A D +KE
Sbjct: 260 IAEQMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPADAASFILLKE 319
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL PRE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 320 QLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 379
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 380 RSKKLKDY 387
>gi|385840490|ref|YP_005863814.1| RNA polymerase sigma factor [Lactobacillus salivarius CECT 5713]
gi|417788402|ref|ZP_12436085.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius NIAS840]
gi|417810215|ref|ZP_12456894.1| RNA polymerase sigma factor [Lactobacillus salivarius GJ-24]
gi|418961440|ref|ZP_13513326.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius SMXD51]
gi|300214611|gb|ADJ79027.1| RNA polymerase sigma factor [Lactobacillus salivarius CECT 5713]
gi|334308579|gb|EGL99565.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius NIAS840]
gi|335349011|gb|EGM50511.1| RNA polymerase sigma factor [Lactobacillus salivarius GJ-24]
gi|380343972|gb|EIA32319.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius SMXD51]
Length = 372
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 178/314 (56%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA+EE+ L+ I+ EG +E
Sbjct: 97 VKINDPVRMYLKEIGRVNLLTADEEVALALKIE-----EGDQE----------------- 134
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 135 ------------------AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAV 176
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR
Sbjct: 177 EKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGR 236
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ + +++ +L + P SL+ IG + + I D +A + +
Sbjct: 237 EPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAA 296
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 297 YELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 356
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 357 KLRHPSRSKQLKDF 370
>gi|452991307|emb|CCQ97365.1| RNA polymerase major sigma-43 factor (sigma-A) [Clostridium
ultunense Esp]
Length = 374
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 125 ELAQRMEAGDEIAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDYE 184
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 185 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELGRDPTPEE 244
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ + ++++ ++ + P SL+ IG ++ + I D A D ++E
Sbjct: 245 IAKEMNMEVEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDDNALAPADAATYIMLRE 304
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L VLDTL PRE++V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 305 QLIDVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPS 364
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 365 RSKKLKDF 372
>gi|283797719|ref|ZP_06346872.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
gi|291074616|gb|EFE11980.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
gi|295092057|emb|CBK78164.1| RNA polymerase, sigma 70 subunit, RpoD [Clostridium cf.
saccharolyticum K10]
Length = 372
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EK+D SKGFKFSTYA WW
Sbjct: 135 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYSKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE R+ +QL E GR P+ EE+AE + ++R+
Sbjct: 195 IRQAITRSIADQARTIRIPVHMVETINRLIRTSRQLLQELGREPSAEELAEKLDMPVERV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D + D + E L +VLDTL R
Sbjct: 255 REIMKISQDPVSLETPIGEEEDSHLGDFIQDDHVQVPVDAATYTLLHEQLMEVLDTLTDR 314
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E++V+R RFGL+DGR +TL+E+G V+RERIRQIE+ A RKL++ R++ L Y
Sbjct: 315 EQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKLKDY 370
>gi|390937151|ref|YP_006394710.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
gi|389890764|gb|AFL04831.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
Length = 500
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 191/315 (60%), Gaps = 20/315 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 302
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 303 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 362
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P +E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 363 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAV 422
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES
Sbjct: 423 AFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTM 482
Query: 507 RKLKNKKRTKHLMQY 521
KL++ R++ L +
Sbjct: 483 SKLRHPSRSQTLRDF 497
>gi|301301338|ref|ZP_07207482.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851066|gb|EFK78806.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 372
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 178/314 (56%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA+EE+ L+ I+ EG +E
Sbjct: 97 VKINDPVRMYLKEIGRVNLLTADEEVALALKIE-----EGDQE----------------- 134
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 135 ------------------AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAV 176
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR
Sbjct: 177 EKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGR 236
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ + +++ +L + P SL+ IG + + I D +A + +
Sbjct: 237 EPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAA 296
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 297 YELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 356
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 357 KLRHPSRSKQLKDF 370
>gi|357021629|ref|ZP_09083860.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
gi|356479377|gb|EHI12514.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
Length = 504
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 185/303 (61%), Gaps = 23/303 (7%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE+ L+ I+ L + L E +E+ PT +LRR + +
Sbjct: 216 LLNAEEEVDLAKRIEAGLFAAQKLAE-YAEKGEKIPT-------------QLRRDMQW-- 259
Query: 285 LCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
+C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KF
Sbjct: 260 ICRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 319
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+
Sbjct: 320 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 379
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKV 458
++ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ V
Sbjct: 380 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 439
Query: 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
L+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 440 LETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL 499
Query: 519 MQY 521
Y
Sbjct: 500 RDY 502
>gi|325290508|ref|YP_004266689.1| RpoD subfamily RNA polymerase sigma-70 subunit [Syntrophobotulus
glycolicus DSM 8271]
gi|324965909|gb|ADY56688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Syntrophobotulus
glycolicus DSM 8271]
Length = 392
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA W
Sbjct: 154 MAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFRKGFKFSTYATW 213
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE A+ + +R
Sbjct: 214 WIRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLLQELGRDPTPEETAKVMDIPEER 273
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ ++ + P SL+ IG ++ + I D +A + +KE LE+VL+TL
Sbjct: 274 VREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFLLLKEQLEEVLETLTS 333
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 334 REEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDY 390
>gi|302670285|ref|YP_003830245.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
gi|302394758|gb|ADL33663.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
Length = 521
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 182/320 (56%), Gaps = 22/320 (6%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+ DP+R LLTA++E+ L+ ++ G+ + A
Sbjct: 216 ISIEDPVRMYLKEIGKVPLLTADQEIDLAQAME----------------AGADAEKELAD 259
Query: 268 AAGVDQ------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
V++ +EL + G K ++ +N+RLV+SIAK Y G GM DL+QEG
Sbjct: 260 DKDVNKLSDARKKELNAIIYEGEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 319
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL
Sbjct: 320 GLIKAVEKFDFRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQL 379
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 441
E GR P EEVA+ + ++R+ +L + P SL+ IG ++ + I D
Sbjct: 380 LQELGREPLPEEVAKEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPV 439
Query: 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501
D +KE L +VL TL RE++V+R RFGL+DGR +TL+E+G+ V+RERIRQI
Sbjct: 440 PADAAAFTLLKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 499
Query: 502 ESSAFRKLKNKKRTKHLMQY 521
E+ A RKL++ R++ L Y
Sbjct: 500 EAKALRKLRHPSRSRKLKDY 519
>gi|227890913|ref|ZP_04008718.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius ATCC
11741]
gi|227867322|gb|EEJ74743.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius ATCC
11741]
Length = 372
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 178/314 (56%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA+EE+ L+ I+ EG +E
Sbjct: 97 VKINDPVRMYLKEIGRVNLLTADEEVALALKIE-----EGDQE----------------- 134
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 135 ------------------AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAV 176
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR
Sbjct: 177 EKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGR 236
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ + +++ +L + P SL+ IG + + I D +A + +
Sbjct: 237 EPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAA 296
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 297 YELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 356
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 357 KLRHPSRSKQLKDF 370
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 164/251 (65%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 214 QMRRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 273
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 274 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 333
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 334 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 393
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 394 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 453
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 454 HPSRSQVLRDY 464
>gi|407718260|ref|YP_006795665.1| RNA polymerase sigma factor RpoD [Leuconostoc carnosum JB16]
gi|407242016|gb|AFT81666.1| RNA polymerase sigma factor RpoD [Leuconostoc carnosum JB16]
Length = 432
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD +KGFKFSTYA WW
Sbjct: 191 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYTKGFKFSTYATWW 250
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ L+ ++
Sbjct: 251 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDLTPDKV 310
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + ++E LE VL+TL R
Sbjct: 311 REILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAYEMLREQLESVLETLTDR 370
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 371 EENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 426
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 180/288 (62%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++KL +E L+++ G + +W G+ + EL++ + G
Sbjct: 32 LLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETELKKTVLEGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIPSEIAKELDLEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + E++ D + + E ++F+++DL +L L P+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQDTELQEMLED-DGPSPEYYTTQEFLRQDLNNLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+RQV+ RFGL DG +L ++GE + +SRER+RQ+E A L+ ++
Sbjct: 271 QRQVLALRFGLSDGNEMSLAKVGERLSLSRERVRQLEHQALAHLRRRR 318
>gi|227549126|ref|ZP_03979175.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078794|gb|EEI16757.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
Length = 520
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 162/249 (65%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 270 KRDLRAVARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 329
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P +
Sbjct: 330 SKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQ 389
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A+ ++ +++ + + P SLDQ IG + + + I D EA A D + ++
Sbjct: 390 ELAKEMDITEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 449
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+ L+ VL TL+ RE VVR RFGL DG +TL EIG++ GV+RERIRQIES KL++
Sbjct: 450 DQLQDVLHTLSEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 509
Query: 513 KRTKHLMQY 521
R++ L Y
Sbjct: 510 SRSQVLRDY 518
>gi|213964575|ref|ZP_03392775.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
gi|213952768|gb|EEB64150.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
Length = 520
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 184/300 (61%), Gaps = 17/300 (5%)
Query: 226 LLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
LLTA EE+ L+ AG+ K++ +++ G +AQ +R+LR
Sbjct: 232 LLTAEEEVSLAKRIEAGLYAQYKIDE-----AKQAGERIAYAQ--------KRDLREISR 278
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 279 DGQRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 338
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 339 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 398
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
+++ + + P SLDQ IG + + + I D EA A D + +++ L VL+T
Sbjct: 399 EEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLGDVLET 458
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
L+ RE VVR RFGL DG +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 459 LSEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 518
>gi|377809612|ref|YP_005004833.1| RNA polymerase sigma factor rpoD [Pediococcus claussenii ATCC
BAA-344]
gi|361056353|gb|AEV95157.1| RNA polymerase sigma factor rpoD [Pediococcus claussenii ATCC
BAA-344]
Length = 380
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 202
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPMPEEIGAEMDMQTEKV 262
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VL+TL R
Sbjct: 263 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLEGVLETLTDR 322
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|296117743|ref|ZP_06836327.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
gi|295969474|gb|EFG82715.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
Length = 334
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 159/251 (63%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+++ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 EKRDMKILVKEGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 142
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 143 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 202
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFM 451
EE+AE +G+ ++ +L + P SLD +G ++ + I D EA AE ++
Sbjct: 203 EELAEESGIEENKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDAEATDAETAVVASMR 262
Query: 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
D+ V+ TL RE+ V+R R+GL+DG +TL +IG G+SRER+RQIE KL++
Sbjct: 263 HSDIRDVIGTLEQREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLRD 322
Query: 512 KKRTKHLMQYA 522
R L +YA
Sbjct: 323 GNRADRLREYA 333
>gi|289167835|ref|YP_003446104.1| DNA-dependent RNA Polymerase sigma factor rpoD [Streptococcus mitis
B6]
gi|288907402|emb|CBJ22239.1| DNA-dependent RNA Polymerase sigma factor rpoD [Streptococcus mitis
B6]
Length = 369
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 185/305 (60%), Gaps = 14/305 (4%)
Query: 223 SSRLLTANEEMQLSAGIQDLL-----KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
S+R+L+A EE +LS +DL+ K+ + + G P +++EL
Sbjct: 70 SARVLSAEEEPELSD--EDLIGSTSAKVNDPVRMYLKEIGVVPLLTNE------EEKELA 121
Query: 278 RRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGF
Sbjct: 122 LAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGF 181
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE
Sbjct: 182 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQEYGQEPTPEQIAE 241
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
++ ++ +L + P SL+ IG + + I D E D + ++E L+
Sbjct: 242 KMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLD 301
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
+VLDTL RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL+ R+K
Sbjct: 302 EVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSK 361
Query: 517 HLMQY 521
L +
Sbjct: 362 PLRDF 366
>gi|408790545|ref|ZP_11202163.1| RNA polymerase sigma factor RpoD [Lactobacillus florum 2F]
gi|408520092|gb|EKK20186.1| RNA polymerase sigma factor RpoD [Lactobacillus florum 2F]
Length = 401
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 154/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 164 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 223
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P E+ + ++
Sbjct: 224 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPLPIEIGAEMDMPTAKV 283
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG + + I D EA + ED + +KE LE VLDTL R
Sbjct: 284 RNIMKISQEPVSLETPIGEEDDSHLGDFIEDKEATSPEDHASYELLKEQLESVLDTLTDR 343
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 344 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 399
>gi|405979920|ref|ZP_11038261.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391295|gb|EJZ86359.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
Length = 619
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 190/316 (60%), Gaps = 22/316 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQW 265
+DP++ YL+ S LL A +E+ L+ AG+ KL+ + ++ +
Sbjct: 319 ADPVKDYLKQIGKVS-LLNAEQEVDLARRIEAGLYAEYKLKNEADSMTAK---------- 367
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
++REL + G L K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 368 ------ERRELHFMASDGQLAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIR 421
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ +
Sbjct: 422 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDL 481
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
GR P EE+A+ ++ +++ V + P SL +G + + + ++I D EA D
Sbjct: 482 GREPTPEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAIVPADA 541
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
+ ++E L VLDTL+ RE VV RFGL DG+ KTL EIG++ GV+RERIRQIES
Sbjct: 542 VSFTLLQEQLHNVLDTLSEREAGVVSMRFGLGDGQPKTLDEIGKVYGVTRERIRQIESKT 601
Query: 506 FRKLKNKKRTKHLMQY 521
KL++ R++ L Y
Sbjct: 602 MSKLRHPSRSQVLRDY 617
>gi|383785810|ref|YP_005470379.1| sigma-70 family RNA polymerase sigma factor [Fervidobacterium
pennivorans DSM 9078]
gi|383108657|gb|AFG34260.1| RNA polymerase sigma factor, sigma-70 family [Fervidobacterium
pennivorans DSM 9078]
Length = 371
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 164/233 (70%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+++I SN+RLV+S+AK Y G G++ DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 129 AKEELIISNLRLVVSMAKRYLGKGLSFLDLIQEGSLGLIKAVEKFDWSKGYKFSTYATWW 188
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++++ +++ E+G P E +AE G ++++
Sbjct: 189 IRQAITRAIADQARTIRVPVHMVETINKIQKIKREYMQEHGEEPPLEYIAEQVGKPVEKI 248
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L S SL+ +G ++ ++ +AD + + I+ MKE+++K+L+TLN R
Sbjct: 249 EEILQSTPETLSLETPVGEEEDSSMADFVADESVGSPKKEAIRTLMKEEIDKLLETLNDR 308
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
E+ V++ R+G+ DG+ KTL+E+G+ GV+RERIRQIE A RKL++ R+++L
Sbjct: 309 EKMVLKMRYGILDGKPKTLEEVGQYFGVTRERIRQIEVKALRKLRHPSRSRYL 361
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 185/288 (64%), Gaps = 1/288 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++KL +E L E G T +W AG+ Q EL++ + G
Sbjct: 32 LLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+R IRLP H+ E ++K+ +++L + GR+ E+AE GL ++
Sbjct: 152 IRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTEIAEELGLEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D E + E L ++ M++D++ +L L P+
Sbjct: 212 REYLSIARQPISLDVRVGDNQDTELSELLEDDE-NSPETYLTQESMRQDIDSMLSELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+R+V+ RFGLEDG +L ++G+ + +SRER+RQ+E A KL+ ++
Sbjct: 271 QREVLSLRFGLEDGNELSLAKVGKKLNLSRERVRQLEHQALAKLRRRR 318
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 192/323 (59%), Gaps = 29/323 (8%)
Query: 225 RLLTANEEMQLSAG--IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL-- 280
RLL +E + G IQ +++ R+ L+ G P+ +WA AAGVD EL+ L
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 281 --------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGT 209
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++
Sbjct: 210 LGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRK 269
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPE 438
+ E GR P E++A ++ ++ VLL + PR SL+ K+G ++ + E++ +
Sbjct: 270 ISQEKGRTPTIEDIARELEMTSPQVREVLL--RVPRSVSLETKVGKEKDTELGELLETDD 327
Query: 439 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERI 498
T E+ L+++ ++ DL+++L L RER V++ RFGL DG +L EIG + +SRER+
Sbjct: 328 V-TPEETLMRESLRRDLQQLLADLTSRERDVIQMRFGLGDGHPYSLAEIGRALDLSRERV 386
Query: 499 RQIESSAFRKLKNKKRTKHLMQY 521
RQIE+ A +KL+ KR + Y
Sbjct: 387 RQIEAKALQKLRQPKRRNRIRDY 409
>gi|374296445|ref|YP_005046636.1| RNA polymerase, sigma 38 subunit, RpoS [Clostridium clariflavum DSM
19732]
gi|359825939|gb|AEV68712.1| RNA polymerase, sigma 38 subunit, RpoS [Clostridium clariflavum DSM
19732]
Length = 359
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 162/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 110 ELAKRMEKGDVEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 169
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E G+ P EE
Sbjct: 170 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGKEPQPEE 229
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ + ++++ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 230 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKE 289
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L VLDTL PRE +V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 290 QLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS 349
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 350 RSKKLKDY 357
>gi|54025729|ref|YP_119971.1| RNA polymerase sigma factor [Nocardia farcinica IFM 10152]
gi|54017237|dbj|BAD58607.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 454
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 184/301 (61%), Gaps = 19/301 (6%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E +RE FA+ V +RR N+
Sbjct: 166 LLNAEEEVELAKRIEAGLYAAEKMRE-----------FAESGEKLPV---AMRRDYNWIV 211
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 212 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 271
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 272 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 331
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
+ +++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL+
Sbjct: 332 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 391
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQ 520
TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L
Sbjct: 392 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 451
Query: 521 Y 521
Y
Sbjct: 452 Y 452
>gi|409358553|ref|ZP_11236916.1| RNA polymerase sigma factor SigB [Dietzia alimentaria 72]
Length = 322
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 154/234 (65%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA
Sbjct: 89 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQA 148
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +E+AE +G+ ++ +L
Sbjct: 149 ITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGRESTLDELAEESGIPAHKIEELL 208
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SLD +G ++ + I D EA +AE+ ++ M D+ VL TL RE+QV
Sbjct: 209 DHSRDPVSLDMPVGADEEAPLGDFIEDAEATSAENTVLSNVMHSDVRAVLATLEEREQQV 268
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
+ RFGL DG+ +TL +IG+ G+SRER+RQIE KL+ +R L YAI
Sbjct: 269 IMLRFGLNDGQPRTLDQIGKRFGLSRERVRQIEREVMAKLREGRRADKLRSYAI 322
>gi|386773591|ref|ZP_10095969.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium
paraconglomeratum LC44]
Length = 437
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 184/311 (59%), Gaps = 7/311 (2%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A +E++L+ I+ L E ++ G ++
Sbjct: 132 ADPVKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDESYRDKNGRLT 184
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
REL + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 185 KAGRELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 244
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 245 DYAKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 304
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ ++ +++ V + P SL +G + + + ++I D EA D +
Sbjct: 305 PEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTL 364
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E L VLDTL+ RE VV RFGLEDG+ KTL EIG++ GV+RERIRQIES KL+
Sbjct: 365 LQEQLHSVLDTLSEREAGVVSMRFGLEDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLR 424
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 425 HPSRSQVLRDY 435
>gi|158320313|ref|YP_001512820.1| RpoD family RNA polymerase sigma factor [Alkaliphilus oremlandii
OhILAs]
gi|158140512|gb|ABW18824.1| RNA polymerase, sigma 70 subunit, RpoD family [Alkaliphilus
oremlandii OhILAs]
Length = 372
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R++ G K +++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 123 ELAKRMDAGDEEAKKRLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYK 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 183 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A LS +++ +L + P SL+ IG ++ + I D +A + +KE
Sbjct: 243 IAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFSLLKE 302
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L +VLDTL PRE++V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 303 QLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPS 362
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 363 RSKKLKDY 370
>gi|254750874|ref|ZP_05202913.1| RNA polymerase sigma factor RpoD [Bacillus anthracis str. Vollum]
Length = 359
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 151/224 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 136 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKV 255
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D EA + D + +KE LE VLDTL R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDR 315
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
>gi|78044024|ref|YP_359316.1| RNA polymerase sigma factor RpoD [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996139|gb|ABB15038.1| RNA polymerase sigma factor RpoD [Carboxydothermus hydrogenoformans
Z-2901]
Length = 370
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 159/236 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 133 AKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 192
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ + L E GR P EE+A+ G+S ++
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKV 252
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + + DP+A+ + ++E L++VL TL R
Sbjct: 253 REIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTER 312
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E++V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 313 EQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDF 368
>gi|334564689|ref|ZP_08517680.1| RNA polymerase sigma factor [Corynebacterium bovis DSM 20582]
Length = 577
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 163/251 (64%)
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+++R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 325 MNRRDLREIERDGRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 384
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 385 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPA 444
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A +S+ ++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 445 PEELAREMDISVDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTL 504
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VV+ RFGL DG +TL EIG++ GV+RERIRQIES KL+
Sbjct: 505 LQDQLQDVLHTLSDREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLR 564
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 565 HPSRSQVLRDY 575
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 184/300 (61%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D + + + ++ +++DL +L L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLED-SGVSPDTFITQELLRQDLANLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL DG+ +L +IG+ M +SRER+RQ+E A L ++R ++ +Y + S
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHL--RRRRANVKEYIVAS 328
>gi|404421205|ref|ZP_11002928.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659218|gb|EJZ13874.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 481
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 163/249 (65%), Gaps = 6/249 (2%)
Query: 279 RLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
R +Y +C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 231 RRDYQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 290
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P E
Sbjct: 291 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 350
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A+ ++ +++ + + P SLDQ IG + + + I D EA A D + ++
Sbjct: 351 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 410
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+ L+ VL+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++
Sbjct: 411 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 470
Query: 513 KRTKHLMQY 521
R++ L Y
Sbjct: 471 SRSQVLRDY 479
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 163/251 (64%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 187 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 246
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 247 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 306
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 307 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 366
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 367 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 426
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 427 HPSRSQVLRDY 437
>gi|406837892|ref|ZP_11097486.1| RNA polymerase sigma factor RpoD [Lactobacillus vini DSM 20605]
Length = 375
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 138 AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P EE+ + ++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPTPEEIGAEMDMPTDKV 257
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + +KE LE VL+TL R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYELLKEQLESVLETLTDR 317
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDF 373
>gi|295394756|ref|ZP_06804971.1| DNA-directed RNA polymerase sigma subunit RpoD [Brevibacterium
mcbrellneri ATCC 49030]
gi|294972352|gb|EFG48212.1| DNA-directed RNA polymerase sigma subunit RpoD [Brevibacterium
mcbrellneri ATCC 49030]
Length = 473
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 186/311 (59%), Gaps = 13/311 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A EE+ L+ I+ + E L + G T A+
Sbjct: 174 ADPVKDYLKQIGKVALLNAAEEVDLAKRIEAGMYAEHLVD------EGKVTDAR------ 221
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D R+ + ++ G + K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 222 -DLRDYKWIIHDGRIAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 280
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 281 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 340
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ ++ +R+ V + P SL +G + + + ++I D EA D +
Sbjct: 341 PEELAKELDMTPERVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADSVSFTL 400
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E L VLDTL+ RE VV RFGL DG+ KTL EIG++ GV+RERIRQIES KL+
Sbjct: 401 LQEQLHSVLDTLSEREAGVVSMRFGLNDGQPKTLDEIGKVYGVTRERIRQIESKTMAKLR 460
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 461 HPSRSQVLRDY 471
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 184/300 (61%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D + + + ++ +++DL +L L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLED-SGVSPDTFITQELLRQDLANLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL DG+ +L +IG+ M +SRER+RQ+E A L ++R ++ +Y + S
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHL--RRRRANVKEYIVAS 328
>gi|261407775|ref|YP_003244016.1| RpoD subfamily RNA polymerase sigma-70 factor [Paenibacillus sp.
Y412MC10]
gi|329927238|ref|ZP_08281536.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF5]
gi|261284238|gb|ACX66209.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus sp.
Y412MC10]
gi|328938638|gb|EGG35021.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF5]
Length = 316
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 162/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIA+ Y G GM DL+QEG GL++ EKFD S
Sbjct: 67 ELSKRIEEGDEEAKRRLAEANLRLVVSIARRYAGRGMQFLDLIQEGNMGLIKAVEKFDYS 126
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ +S++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 127 KGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEE 186
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+ + +S +++ + + P SL+ +G + + I D +A D + +KE
Sbjct: 187 IGKEMDISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAAAFELLKE 246
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VLDTL RE V+R RFGLEDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 247 QLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPS 306
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 307 RSKRLKDF 314
>gi|433647336|ref|YP_007292338.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297113|gb|AGB22933.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 518
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L L+E+ P +R++ G
Sbjct: 230 LLNAEEEVELAKRIEAGLYATQLMSELTEKGEKLPP---------AQRRDMMWICRDGDR 280
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 281 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 340
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 341 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 400
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 401 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 460
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 461 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 516
>gi|422343577|ref|ZP_16424505.1| RNA polymerase sigma factor rpoD [Selenomonas noxia F0398]
gi|355378884|gb|EHG26064.1| RNA polymerase sigma factor rpoD [Selenomonas noxia F0398]
Length = 382
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 159/245 (64%), Gaps = 1/245 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL RR+ G + ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 132 ELARRMEAGDESARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYS 191
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE + +QL + GR P EE
Sbjct: 192 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKYIRISRQLLQDLGRDPTAEE 251
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
VA+ GLS R+ ++ + P SL+ IG ++ + I D A D +KE
Sbjct: 252 VAKEMGLSTLRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAALDPADAASVMLLKE 311
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+ +VL TL PRE +V+R RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 312 QITEVLQTLAPREAEVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPV 371
Query: 514 RTKHL 518
R + L
Sbjct: 372 RLRKL 376
>gi|292670109|ref|ZP_06603535.1| DNA-directed RNA polymerase sigma subunit RpoD [Selenomonas noxia
ATCC 43541]
gi|292648297|gb|EFF66269.1| DNA-directed RNA polymerase sigma subunit RpoD [Selenomonas noxia
ATCC 43541]
Length = 382
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 159/245 (64%), Gaps = 1/245 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL RR+ G + ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 132 ELARRMEAGDESARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYS 191
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE + +QL + GR P EE
Sbjct: 192 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKYIRISRQLLQDLGRDPTAEE 251
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
VA+ GLS R+ ++ + P SL+ IG ++ + I D A D +KE
Sbjct: 252 VAKEMGLSTLRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAALDPADAASVMLLKE 311
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
+ +VL TL PRE +V+R RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 312 QITEVLQTLAPREAEVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPV 371
Query: 514 RTKHL 518
R + L
Sbjct: 372 RLRKL 376
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 184/300 (61%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D + + + ++ +++DL +L L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLED-SGVSPDTFITQELLRQDLANLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL DG+ +L +IG+ M +SRER+RQ+E A L ++R ++ +Y + S
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHL--RRRRANVKEYIVAS 328
>gi|289523410|ref|ZP_06440264.1| RNA polymerase sigma factor RpoD [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503102|gb|EFD24266.1| RNA polymerase sigma factor RpoD [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 412
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 156/232 (67%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
+I +N+RLV+SIAK Y G G++ DL+QEG GL+R EKFD KGFKFSTYA WWI+QA
Sbjct: 179 LIEANLRLVVSIAKKYIGRGLSFLDLIQEGNLGLIRAVEKFDYRKGFKFSTYATWWIRQA 238
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++DQ+RTIR+P HMVE ++ +QL + GR P EE+A++ GL +++ +
Sbjct: 239 ITRAIADQARTIRIPVHMVETINKLIRVSRQLVQQLGREPTIEEIAQSLGLPPEKVEDIQ 298
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SL+ IG ++ + + + D E+ ED + ++E LE++L L RER+V
Sbjct: 299 RIAQEPVSLETPIGEEEDSQLGDFLEDKESPNPEDATAGQLLREQLEEMLGELTEREREV 358
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+R RFGLEDG TL+E+G+ V+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 359 LRLRFGLEDGHAHTLEEVGKRFNVTRERIRQIEAKALRKLRHPSRSKRLRDY 410
>gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
gi|340534454|gb|AEK36934.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
Length = 536
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 183/300 (61%), Gaps = 17/300 (5%)
Query: 226 LLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
LL A +E+ L+ AG+ K+E ++E E+ SP + +R+LR
Sbjct: 248 LLNAEQEVSLAKRIEAGLYATYKMEQIKES-GEKV--SP----------MQKRDLREIDR 294
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 295 DGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 354
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 355 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 414
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 461
++ + + P SLDQ IG + + + I D EA A D + +++ L+ VL T
Sbjct: 415 EDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHT 474
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
L+ RE VV+ RFGL DG +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 475 LSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 534
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 184/300 (61%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D + + + ++ +++DL +L L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLED-SGVSPDTFITQELLRQDLANLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL DG+ +L +IG+ M +SRER+RQ+E A L ++R ++ +Y + S
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHL--RRRRANVKEYIVAS 328
>gi|170017101|ref|YP_001728020.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc citreum KM20]
gi|414596325|ref|ZP_11445900.1| RNA polymerase sigma factor [Leuconostoc citreum LBAE E16]
gi|421879503|ref|ZP_16310969.1| RNA polymerase sigma factor [Leuconostoc citreum LBAE C11]
gi|169803958|gb|ACA82576.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leuconostoc citreum KM20]
gi|390446630|emb|CCF27089.1| RNA polymerase sigma factor [Leuconostoc citreum LBAE C11]
gi|390482787|emb|CCF27961.1| RNA polymerase sigma factor [Leuconostoc citreum LBAE E16]
Length = 432
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 164/253 (64%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ + +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEINIAKRIEDGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ +++ LE VL+TL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLRDQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|163790450|ref|ZP_02184881.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. AT7]
gi|159874354|gb|EDP68427.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. AT7]
Length = 373
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 179/314 (57%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA EE++L+ I+ EG
Sbjct: 98 VKINDPVRMYLKEIGRVNLLTAAEEVELAIKIE-----EG-------------------- 132
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
DQ E R+RL +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 133 ----DQ-EARQRLA----------EANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAV 177
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 178 EKFDYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGR 237
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ L +++ +L + P SL+ IG + + I D +A + +
Sbjct: 238 EPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAA 297
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+++G++ GV+RERIRQIE+ A R
Sbjct: 298 YELLKEQLEDVLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALR 357
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 358 KLRHPSRSKQLKDF 371
>gi|451944378|ref|YP_007465014.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
gi|451903765|gb|AGF72652.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
Length = 517
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 212/392 (54%), Gaps = 8/392 (2%)
Query: 130 PEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV 189
PE E E +P+ + D +P + +E + TE AE A A+V
Sbjct: 132 PELEVDELEPVEEDPDFDPA-----IADEDEEFDTDLEGDDLTEDDDEEEEEAEDAGASV 186
Query: 190 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
+ R+ R Q +D +R LL A +E+ L+ I+ L +
Sbjct: 187 WDEDESAALRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYADYRM 246
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ + E A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G G
Sbjct: 247 QQMEEAFAAGDKDAKLTPAL---KRDLRAISRDGRKAKNHLLEANLRLVVSLAKRYTGRG 303
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M DL+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE
Sbjct: 304 MAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 363
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ +++L + GR P +E+A+ ++ +++ + + P SLDQ IG + +
Sbjct: 364 VINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIGDEGDSQ 423
Query: 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGE 489
+ I D EA A D + +++ L+ VL TL+ RE VVR RFGL DG +TL EIG+
Sbjct: 424 LGDFIEDSEAVVAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPRTLDEIGQ 483
Query: 490 LMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ GV+RERIRQIES KL++ R++ L Y
Sbjct: 484 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 515
>gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 476
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 164/251 (65%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 224 QMRRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 283
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 284 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 343
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 344 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 403
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 404 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 463
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 464 HPSRSQVLRDY 474
>gi|404447267|ref|ZP_11012342.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
gi|403649131|gb|EJZ04562.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
Length = 459
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE+ L+ I+ L L L+E+ G T AQ +R++ G
Sbjct: 171 LLNAEEEVDLAKRIEAGLYATQLMAELAEK-GEKLTTAQ--------RRDMMWVCRDGDR 221
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 222 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 281
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 282 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 341
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 342 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 401
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 402 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 457
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 184/300 (61%), Gaps = 3/300 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
L + P SLD ++G NQ+ + SE++ D + + + ++ +++DL +L L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLED-SGVSPDTFITQELLRQDLANLLAELTPQ 270
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAITS 525
+R+V+ RFGL DG+ +L +IG+ M +SRER+RQ+E A L ++R ++ +Y + S
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHL--RRRRANVKEYIVAS 328
>gi|357058503|ref|ZP_09119354.1| RNA polymerase sigma factor rpoD [Selenomonas infelix ATCC 43532]
gi|355373831|gb|EHG21139.1| RNA polymerase sigma factor rpoD [Selenomonas infelix ATCC 43532]
Length = 372
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 155/229 (67%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 142 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 201
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ + L E GR P EE+A+ G+S+ R+H ++
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRISRGLLQELGRDPRPEEIAKEMGISVARVHEIMKIA 261
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A + ++E LE+VL+TL RE+ V+R
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 321
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 322 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDF 370
>gi|328957491|ref|YP_004374877.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. 17-4]
gi|328673815|gb|AEB29861.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. 17-4]
Length = 373
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 179/314 (57%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA EE++L+ I+ EG
Sbjct: 98 VKINDPVRMYLKEIGRVNLLTAAEEVELAIKIE-----EG-------------------- 132
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
DQ E R+RL +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 133 ----DQ-EARQRLA----------EANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAV 177
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 178 EKFDYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGR 237
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ L +++ +L + P SL+ IG + + I D +A + +
Sbjct: 238 EPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAA 297
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+++G++ GV+RERIRQIE+ A R
Sbjct: 298 YELLKEQLEDVLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALR 357
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 358 KLRHPSRSKQLKDF 371
>gi|421877036|ref|ZP_16308587.1| RNA polymerase sigma factor [Leuconostoc citreum LBAE C10]
gi|372557167|emb|CCF24707.1| RNA polymerase sigma factor [Leuconostoc citreum LBAE C10]
Length = 432
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 164/253 (64%), Gaps = 1/253 (0%)
Query: 270 GVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G ++ + +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +
Sbjct: 174 GDEEINIAKRIEDGDVEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVD 233
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 234 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 293
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
P EE+ L+ ++ +L + P SL+ IG + + I D EA + D
Sbjct: 294 PLPEEIGAEMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAY 353
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
+ +++ LE VL+TL RE V+R RFGLEDGR +TL+E+G + GV+RERIRQIE+ A RK
Sbjct: 354 EMLRDQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 509 LKNKKRTKHLMQY 521
L++ R+K L +
Sbjct: 414 LRHPSRSKQLKDF 426
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 194/309 (62%), Gaps = 4/309 (1%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 5 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 63
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+
Sbjct: 64 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQ 123
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
RG EKFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP H+ E ++K+ ++QL S+
Sbjct: 124 RGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQL-SQ 182
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAED 444
E+A A L+ ++ L + P SLD ++G NQ+ + +++ ++
Sbjct: 183 QLSTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELGDLLETDMQRRRKE 242
Query: 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504
++ M+ D++++LD L ++RQV+ R+GLEDG++ TL IG+ + +SRER+RQ+E
Sbjct: 243 FTLQASMRRDIDRLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLERE 302
Query: 505 AFRKLKNKK 513
A L+ +
Sbjct: 303 ALHTLRQAR 311
>gi|77406972|ref|ZP_00783989.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae H36B]
gi|77174413|gb|EAO77265.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae H36B]
Length = 369
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 158/238 (66%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
++ K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGFKFSTYA
Sbjct: 129 LMAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYAT 188
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE ++
Sbjct: 189 WWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPD 248
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ +L + P SL+ IG + + I D E D + ++E L++VLDTL
Sbjct: 249 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLT 308
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 309 DREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|407474257|ref|YP_006788657.1| RNA polymerase factor sigma-70 RpoD [Clostridium acidurici 9a]
gi|407050765|gb|AFS78810.1| RNA polymerase factor sigma-70 RpoD [Clostridium acidurici 9a]
Length = 371
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 122 ELAKRMEQGDEEAKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYE 181
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR P EE
Sbjct: 182 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQDLGREPTPEE 241
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ L + ++ + + P SL+ IG ++ + I D +A+ + +KE
Sbjct: 242 IAKEMNLDVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPAEAATFTMLKE 301
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L VLDTL PRE++V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 302 QLIDVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPS 361
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 362 RSKKLKDF 369
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 187/305 (61%), Gaps = 1/305 (0%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D +D +R LLT +E+ ++ L L+ ++E L ++ G PTF++WA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
+ + +L+ + G K KM+ +N+RLV+++AK Y + L DL+QEG GL RG E
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVE 125
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KG++FSTYA+WWI+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR
Sbjct: 126 KFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRT 185
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIK 448
E+A L+ +L + P SL+ ++G N++ + E++ D ED + +
Sbjct: 186 ATISELAIELNLTPDQLREYFEQARQPLSLELRVGDNKDTELVELLEDT-GPGPEDFVNQ 244
Query: 449 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508
M+ DLEK +D L P++RQV+R R+GL + TL +IG+ + +SRER+RQIE A K
Sbjct: 245 SLMQLDLEKFMDDLTPQQRQVLRLRYGLAEVEPMTLAKIGQHLNISRERVRQIEREAIAK 304
Query: 509 LKNKK 513
L+ ++
Sbjct: 305 LRKRQ 309
>gi|389575813|ref|ZP_10165841.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
gi|389311298|gb|EIM56231.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
Length = 373
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 162/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 124 ELAKRMEEGDEVAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 183
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 184 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEE 243
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ +S++R+ +L + P SL+ IG ++ + I D D +KE
Sbjct: 244 IAKNMNMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDENVPVPADAAAFTMLKE 303
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL TL RE++V+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++
Sbjct: 304 QLEEVLGTLAEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS 363
Query: 514 RTKHLMQY 521
R++ L Y
Sbjct: 364 RSRKLKDY 371
>gi|384915839|ref|ZP_10016044.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
gi|384526701|emb|CCG91915.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
Length = 625
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 181/298 (60%), Gaps = 20/298 (6%)
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAA---AAGVDQ----------------RELRRRL 280
Q++LKLE +EVL E+ G P + + V+Q EL++ L
Sbjct: 319 QEVLKLEKEKEVL-EKSGLDPEAKEKEGKQLSLKVEQLEHQIHLPLDLFKKKHEELKQWL 377
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
N + K M+ +N+RLVISIAK Y G++ DL+QEG GL++ EKF+ +G+KFST
Sbjct: 378 NEALKAKSCMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFST 437
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +KQL E GR P EE+AE T +
Sbjct: 438 YATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIAEETQM 497
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLD 460
S+ R+ A++ + P SL ++G +++ + I D AE ++ ++E + VL
Sbjct: 498 SVDRIRAIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKIRDVLH 557
Query: 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
TL RER V+ RFGL DG +TL+E+G+ V+RERIRQIE+ A RK+++ R +HL
Sbjct: 558 TLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRLRHL 615
>gi|336283393|gb|AEI29170.1| sigma70 transcriptional factor [Rhodococcus ruber]
Length = 447
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 164/249 (65%), Gaps = 4/249 (1%)
Query: 277 RRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
RR LN+ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 197 RRDLNWTCRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 256
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P E
Sbjct: 257 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 316
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A+ ++ +++ + + P SLDQ IG + + + I D EA A D + ++
Sbjct: 317 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 376
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
+ L+ VL+TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++
Sbjct: 377 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHL 436
Query: 513 KRTKHLMQY 521
R++ L Y
Sbjct: 437 SRSQVLRDY 445
>gi|255325126|ref|ZP_05366232.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311739588|ref|ZP_07713423.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255297691|gb|EET77002.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311305404|gb|EFQ81472.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 490
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 190/324 (58%), Gaps = 5/324 (1%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCG 257
R+ R Q +D +R LL A +E+ L+ I+ L + E+ R
Sbjct: 169 RQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQHRMDEMEKARAE 228
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G A + +++R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 229 GDKA----AKLSPMEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 284
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 285 EGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRI 344
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADP 437
+++L + GR P +E+A+ ++ +++ + + P SLDQ IG + + + I D
Sbjct: 345 QRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDS 404
Query: 438 EAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRER 497
EA A D + +++ L+ VL TL+ RE VVR RFGL DG +TL EIG++ GV+RER
Sbjct: 405 EAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRER 464
Query: 498 IRQIESSAFRKLKNKKRTKHLMQY 521
IRQIES KL++ R++ L Y
Sbjct: 465 IRQIESKTMSKLRHPSRSQVLRDY 488
>gi|167630065|ref|YP_001680564.1| RNA polymerase sigma factor RpoD [Heliobacterium modesticaldum
Ice1]
gi|167592805|gb|ABZ84553.1| RNA polymerase sigma factor rpod [Heliobacterium modesticaldum
Ice1]
Length = 371
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 122 ELAKRMEEGDEAAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 181
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 182 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPMPEE 241
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ + ++R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 242 IAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKE 301
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE+VL+TL RE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++
Sbjct: 302 QLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 361
Query: 514 RTKHLMQY 521
R+K L Y
Sbjct: 362 RSKKLKDY 369
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 174/274 (63%), Gaps = 2/274 (0%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
IQ+L+KLEG + L +CG PT +WA A G+ REL+ + G C++KM SN RLV
Sbjct: 5 IQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLV 64
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
I +A+ Y+G G+++QDLVQ+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ S
Sbjct: 65 IHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNS 124
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
R IRLP + +V +AR + +G P NE VA G+++++L + + RS+
Sbjct: 125 RLIRLPESVYALLRKVGKARMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSM 183
Query: 419 DQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVL-DTLNPRERQVVRWRFGLE 477
++ + + E+ DP E E + + M++ + L L+PRE++++ RFG+
Sbjct: 184 QDRVWSDDGVTYQEITEDPNIEGPEVSVDRLMMRQQVRSFLTGILSPREKEIIEHRFGIH 243
Query: 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511
DG+ KTL IG++ G+S+ERIRQ+++ A KL+N
Sbjct: 244 DGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRN 277
>gi|384566576|ref|ZP_10013680.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522430|gb|EIE99625.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 439
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 163/251 (64%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 187 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 246
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 247 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 306
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 307 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 366
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 367 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 426
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 427 HPSRSQVLRDY 437
>gi|90961886|ref|YP_535802.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius UCC118]
gi|90821080|gb|ABD99719.1| RNA polymerase sigma factor [Lactobacillus salivarius UCC118]
Length = 372
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 178/314 (56%), Gaps = 40/314 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP+R LLTA+EE+ L+ I+ EG +E
Sbjct: 97 VKINDPVRMYLKEIGRVNLLTADEEVALALKIE-----EGDQE----------------- 134
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++
Sbjct: 135 ------------------AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAV 176
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR
Sbjct: 177 EKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGR 236
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P EE+ + +++ +L + P SL+ IG + + I D +A + +
Sbjct: 237 EPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAA 296
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ +KE LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A R
Sbjct: 297 YELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 356
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 357 KLRHPSRSKQLKDF 370
>gi|312143990|ref|YP_003995436.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halanaerobium
hydrogeniformans]
gi|311904641|gb|ADQ15082.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halanaerobium
hydrogeniformans]
Length = 360
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 123 AKQQLVEANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLMKAVEKFDYTKGYKFSTYATWW 182
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE ++ +QL E GR P EE+ E +S +++
Sbjct: 183 IRQAITRSIADQARTIRVPVHMVETINKLIRVSRQLLQEKGREPKPEEIGEEMDISAEKV 242
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL+ IG ++ + I D ++ +KE L+ VLDTL R
Sbjct: 243 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDSPAPASAASYILLKEQLDGVLDTLTER 302
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E++V+ RFG+EDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 303 EKRVLELRFGIEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLKDY 358
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 182/326 (55%), Gaps = 26/326 (7%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS-------AGIQDLLKLEGLREVLSER 255
P + ++ DP+R LLTA EE+ L+ A LL+ +G+ E
Sbjct: 78 PDLSDIALDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAANDTLLQDDGMLE----- 132
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
D+ L+R ++ G + +I +N+RLV+SIAK Y G+ + DL
Sbjct: 133 --------------HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDL 178
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
VQEG GL+R EKFD +KG KFSTYA WWI+QA+ ++++DQSRTIRLP HM EA +VK
Sbjct: 179 VQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVK 238
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435
+L R P EE+AEA G++ ++ L + P SL+ +G + + I
Sbjct: 239 RTSHKLQQTMQREPTPEEIAEAMGITASKVRRTLEASMHPLSLEMPVGQEGEGRMGDFIE 298
Query: 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSR 495
D T D ++E +E+VL L RER++++ R+GL+DGR +TL+E+G G++R
Sbjct: 299 DDRVSTPVDAAAMTMLREQIEEVLQKLPERERKIIQLRYGLKDGRYRTLEEVGLEFGITR 358
Query: 496 ERIRQIESSAFRKLKNKKRTKHLMQY 521
ERIRQIE+ A RKL++ K L Y
Sbjct: 359 ERIRQIEAVALRKLRHPHLGKKLRGY 384
>gi|451338995|ref|ZP_21909521.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
gi|449418374|gb|EMD23965.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
Length = 466
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 164/251 (65%), Gaps = 4/251 (1%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 214 QMRRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 273
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 274 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 333
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
EE+A+ +S +++ + + P SLDQ IG + + + I D EA A D +
Sbjct: 334 PEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 393
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
+++ L+ VL TL+ RE VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL+
Sbjct: 394 LQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 453
Query: 511 NKKRTKHLMQY 521
+ R++ L Y
Sbjct: 454 HPSRSQVLRDY 464
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 187/316 (59%), Gaps = 17/316 (5%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAA 268
+D LR YLR RLLTA EE++L+ I+ L E L V P A+ A
Sbjct: 84 ADLLRQYLR-EIGRVRLLTAVEEVELARAIEAGLFAEEALDRV--------PPAAERRPA 134
Query: 269 AGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D+R +L R + G + K ++I +N+RLV+S+AK Y G G+ L DL+QEG GL+R
Sbjct: 135 ---DERLLGDLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTLLDLIQEGNVGLIR 191
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++ L E
Sbjct: 192 AVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVLRVQRGLLQER 251
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDL 445
G P EV L +R+ VL + P SL +G ++ ++I D +A + +
Sbjct: 252 GVEPTAAEVGAVLQLPPERVREVLKLAQEPVSLHTPVGEEDDVALGDLIEDADAASPPES 311
Query: 446 LIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505
++E LE VL TL RERQVV+ R+GL+DGR +TL+EIG L GV+RERIRQIE+
Sbjct: 312 AAFLLLREHLEAVLATLGERERQVVQLRYGLDDGRPRTLEEIGHLFGVTRERIRQIEAKT 371
Query: 506 FRKLKNKKRTKHLMQY 521
KL++ L Y
Sbjct: 372 LGKLRDHAFADQLRGY 387
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 181/289 (62%), Gaps = 3/289 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ QSRTIRLP H+ E ++K+ +++L GR E+A+ + ++
Sbjct: 152 IRQAITRAIAQQSRTIRLPIHITEKLNKIKKTQRELSQTLGRSATPSEIAQELEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI-KKFMKEDLEKVLDTLNP 464
L + P SLD ++G NQ+ + SE++ D + DL I ++ +++DL ++ L P
Sbjct: 212 REFLSIARQPISLDVRVGDNQDTELSELLED--QGVSPDLYITQELLRQDLRNLMAELTP 269
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
++R V+ RFGLEDG+ +L +IG+ M +SRER+RQ+E A +L+ ++
Sbjct: 270 QQRTVLTLRFGLEDGKELSLAKIGKRMNISRERVRQLEHQALAQLRRRR 318
>gi|22537572|ref|NP_688423.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae 2603V/R]
gi|25011538|ref|NP_735933.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae NEM316]
gi|76788342|ref|YP_330069.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae A909]
gi|77409561|ref|ZP_00786243.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae COH1]
gi|77412516|ref|ZP_00788814.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae CJB111]
gi|77414847|ref|ZP_00790961.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae 515]
gi|406709820|ref|YP_006764546.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae
GD201008-001]
gi|417005760|ref|ZP_11944353.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae FSL
S3-026]
gi|421146424|ref|ZP_15606138.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae GB00112]
gi|424049118|ref|ZP_17786669.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae ZQ0910]
gi|22534455|gb|AAN00296.1|AE014257_3 RNA polymerase sigma-70 factor [Streptococcus agalactiae 2603V/R]
gi|24413077|emb|CAD47155.1| RNA polymerase major sigma factor RpoD [Streptococcus agalactiae
NEM316]
gi|76563399|gb|ABA45983.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae A909]
gi|77159097|gb|EAO70294.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae 515]
gi|77161430|gb|EAO72443.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae CJB111]
gi|77171826|gb|EAO75013.1| RNA polymerase sigma-70 factor [Streptococcus agalactiae COH1]
gi|341577573|gb|EGS27981.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae FSL
S3-026]
gi|389649318|gb|EIM70800.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae ZQ0910]
gi|401686884|gb|EJS82850.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae GB00112]
gi|406650705|gb|AFS46106.1| RNA polymerase sigma factor RpoD [Streptococcus agalactiae
GD201008-001]
Length = 369
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 158/238 (66%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
++ K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGFKFSTYA
Sbjct: 129 LMAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYAT 188
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE ++
Sbjct: 189 WWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPD 248
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ +L + P SL+ IG + + I D E D + ++E L++VLDTL
Sbjct: 249 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLT 308
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 309 DREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKDF 366
>gi|335357397|ref|ZP_08549267.1| RNA polymerase sigma factor RpoD [Lactobacillus animalis KCTC 3501]
Length = 323
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 86 AKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 145
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P EE+ + +++
Sbjct: 146 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPIPEEIGAEMNMPTEKV 205
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + + + +KE +E VLDTL R
Sbjct: 206 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQIESVLDTLTDR 265
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 266 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 321
>gi|453363975|dbj|GAC80290.1| RNA polymerase sigma factor SigB [Gordonia malaquae NBRC 108250]
Length = 332
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 187/329 (56%), Gaps = 19/329 (5%)
Query: 200 RKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
R RP++ E D +D +R + LL A +E++L+ I+ L + L
Sbjct: 16 RTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHL----- 70
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
A +R+L G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 71 --------LATKKRLTAAKKRDLNIIAREGDAARAHLLEANLRLVVSLAKRYTGRGMPLL 122
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R AEKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE +
Sbjct: 123 DLIQEGNLGLIRAAEKFDYAKGFKFSTYATWWIRQAISRGMADQSRTIRLPVHLVEQVNK 182
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEV 433
+ R++L+ + GR ++E+A +G+ +++ ++ + P SLD +G ++ +
Sbjct: 183 LARIRRELHQQLGREATDDELAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEAPLGDF 242
Query: 434 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 493
I D EA +AE ++I + D+ VL TL+ RE+ V+ RFGL+DG+ +TL +IG G+
Sbjct: 243 IEDSEATSAETVVIANLLHSDIRLVLGTLDEREQAVITMRFGLDDGQPRTLDQIGRAFGL 302
Query: 494 SRERIRQIESSAFRKLKNKKRTKHLMQYA 522
SRER+RQIE KL+ R L YA
Sbjct: 303 SRERVRQIERDVMGKLRQGDRADKLRAYA 331
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 203/349 (58%), Gaps = 13/349 (3%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKR-PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
+ A++ M +K KR +Q++D D + L+ +L EE S G
Sbjct: 234 KIADELKELYMKLKRKEKDLNKRIKRLQKID-PDVEKLLKGDYDDPEILKKIEENGFSFG 292
Query: 239 IQDLLKLEGLR-----EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
++L+ E L+ E L E G PT ++ + Q E R+ +N K K++ S
Sbjct: 293 RFEILRTETLKLQEEIEELKEMIGTVPT--EFDHVINIIQ-EGRKEVNE---TKQKIVQS 346
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
N+RLV+SIAK Y G+ DL+QEG GL++ +KFD KG+KFSTYA WWI+QA+ ++
Sbjct: 347 NLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFDYKKGYKFSTYATWWIRQAITRA 406
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
++DQ+RTIR+P HM+E ++ + + E GR P EE+A+ G+ +++ +L + +
Sbjct: 407 IADQARTIRIPVHMIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKVRKILRTSQ 466
Query: 414 APRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWR 473
P SL+ IG + + I D + E ++++ +++ LE+VL TL+ RE QV+R+R
Sbjct: 467 EPISLETPIGDDDESHLGDFIEDKTVMSPEQHVLRQALRQQLEEVLSTLSEREEQVLRYR 526
Query: 474 FGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYA 522
FGLED TL+++G+ GV+RERIRQIE+ A RKL++ R K+L +
Sbjct: 527 FGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLRHPHRAKYLRPFC 575
>gi|227529171|ref|ZP_03959220.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
vaginalis ATCC 49540]
gi|227350896|gb|EEJ41187.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
vaginalis ATCC 49540]
Length = 380
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 155/236 (65%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA WW
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+ + +++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D +A + D + MK+ LE VLDTL R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 378
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 13/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E ER G+P A +L R + G
Sbjct: 79 LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG------DLDRLVVMGRT 125
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 126 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 185
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV +++L E G P E++A L+ +R+
Sbjct: 186 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVDLDLTPERV 245
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL +G ++ ++I D +A + + ++E LE VL TL R
Sbjct: 246 TDILRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGER 305
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GLEDGR +TL+EIG + GV+RERIRQIES +L++ L Y
Sbjct: 306 ERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGY 361
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 184/321 (57%), Gaps = 17/321 (5%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSP 260
P + ++ + DP+R LLTA +E++L+ ++ D+ + RE +
Sbjct: 84 PDLTDIAFDDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYT------- 136
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
+G ++ EL R G + +I +N+RLV+SIAK Y G+ + DLVQEG
Sbjct: 137 --------SGRERMELERAYALGCESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGN 188
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD +KG KFSTYA WWI+QA+ ++++DQSRTIRLP HM EA +VK +
Sbjct: 189 IGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHK 248
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAE 440
L R P EE+AEA G+S ++ L + P SL+ +G + + I D
Sbjct: 249 LQQSMQREPTPEEIAEAMGISAGKVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRIS 308
Query: 441 TAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 500
T + ++E +E+VL L RER++++ R+GL+DGR +TL+E+G G++RERIRQ
Sbjct: 309 TPSEAAAAAMLREQIEEVLQKLPERERKIIQLRYGLKDGRYRTLEEVGVEFGITRERIRQ 368
Query: 501 IESSAFRKLKNKKRTKHLMQY 521
IE+ A RKL++ K L Y
Sbjct: 369 IEAVALRKLRHPHLGKKLRGY 389
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 186/305 (60%), Gaps = 23/305 (7%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 284
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 285 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+CK D MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+A++++ GR N EE+A+
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLTRIKKAQRKIAQTKGRTANLEEIAQ 269
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
++ ++ VLL SL+ ++G ++ + +++ + T E+ L ++ + DL+
Sbjct: 270 ELEMTPDQVREVLLRVPKSISLETRVGKEKDTELGDLLETTDF-TPEERLTQESLSNDLQ 328
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
++L LN RER V+R RFGL DG++ +L EIG+++ +SRER+RQIE+ A +KL++ +R
Sbjct: 329 RLLLELNHRERDVIRMRFGLRDGQIYSLAEIGQVLDLSRERVRQIEAKALQKLRHPRRRN 388
Query: 517 HLMQY 521
+ Y
Sbjct: 389 QIRDY 393
>gi|320547037|ref|ZP_08041336.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
equinus ATCC 9812]
gi|320448322|gb|EFW89066.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
equinus ATCC 9812]
Length = 369
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 156/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGFKFSTYA WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE +S ++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMSPDKV 250
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+L + P SL+ IG + + I D E D + ++E L++VLDTL R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDR 310
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 EENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDF 366
>gi|452992460|emb|CCQ96087.1| RNA polymerase major sigma-43 factor (sigma-A) [Clostridium
ultunense Esp]
Length = 384
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD +
Sbjct: 135 ELAKRIEQGDEAAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLLKAVDKFDYN 194
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 195 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTAEE 254
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+A+ +S ++ + + P SL+ IG + + I D EA D + +KE
Sbjct: 255 IAKEMEMSPDKVREIQKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKE 314
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 315 QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 374
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 375 RSKRLRDF 382
>gi|427392567|ref|ZP_18886572.1| RNA polymerase sigma factor rpoD [Alloiococcus otitis ATCC 51267]
gi|425731247|gb|EKU94066.1| RNA polymerase sigma factor rpoD [Alloiococcus otitis ATCC 51267]
Length = 369
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 157/237 (66%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA W
Sbjct: 131 IAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYEKGFKFSTYATW 190
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE+ L ++
Sbjct: 191 WIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPTPEEIGAEMDLPTEK 250
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ +L + P SL+ IG ++ + I D A + D + +K +L+ VLDTL
Sbjct: 251 VRDILKISQEPVSLETPIGEEEDSHLGDFIEDDGALSPSDNAAYELLKGELKGVLDTLTD 310
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DGR +TL+++G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 311 REENVLRLRFGLDDGRQRTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDF 367
>gi|329117418|ref|ZP_08246135.1| RNA polymerase sigma factor RpoD [Streptococcus parauberis NCFD
2020]
gi|326907823|gb|EGE54737.1| RNA polymerase sigma factor RpoD [Streptococcus parauberis NCFD
2020]
gi|456370656|gb|EMF49552.1| RNA polymerase sigma factor [Streptococcus parauberis KRS-02109]
gi|457095698|gb|EMG26169.1| RNA polymerase sigma factor [Streptococcus parauberis KRS-02083]
Length = 369
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 166/254 (65%), Gaps = 1/254 (0%)
Query: 269 AGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
G +++EL ++ G L K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 113 TGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAV 172
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
+KFD SKGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+
Sbjct: 173 DKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQ 232
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 447
P E++AE ++ ++ +L + P SL+ IG + + I D E D
Sbjct: 233 DPTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTT 292
Query: 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507
+ ++E L++VLDTL RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A R
Sbjct: 293 RVVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALR 352
Query: 508 KLKNKKRTKHLMQY 521
KL++ R+K L +
Sbjct: 353 KLRHPSRSKQLRDF 366
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 170/262 (64%), Gaps = 5/262 (1%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQEG
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQEGTL 171
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 172 GLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPMHITEKLNRIKRVQQEI 231
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEA 439
S GR + ++A+A GLS + + L+ + PR SL+ +IG Q+ + +++ D A
Sbjct: 232 ASSQGRLASIADLAKALGLSEETVRLTLM--RVPRSISLETRIGQEQDTQLGDLLEDSNA 289
Query: 440 ETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIR 499
T E+ L + + DLE +LD L+ RE V+R RFGLED +TL +IGE M +SRER+R
Sbjct: 290 -TPEEKLTRNQLHNDLEILLDELSNREATVIRRRFGLEDDTPQTLTQIGEAMHLSRERVR 348
Query: 500 QIESSAFRKLKNKKRTKHLMQY 521
QIE+ A KL+ +R + Y
Sbjct: 349 QIETHALLKLRQPQRRCKVRDY 370
>gi|315924365|ref|ZP_07920587.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622244|gb|EFV02203.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 396
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 40/352 (11%)
Query: 170 RQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTA 229
R T + T + + A + S++ + +K + V+ +DP+R LLTA
Sbjct: 83 RLTFKDMDMTDLDDASIAELRSIEKDEKTNKKEDLTENVNVNDPVRLYLKEIGRVSLLTA 142
Query: 230 NEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDK 289
+EEM + A+ AA D K +
Sbjct: 143 DEEMAI---------------------------AKRMAAGDED-------------AKKE 162
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD +KGFKFSTYA WWI+QA
Sbjct: 163 LAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQA 222
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++DQ+RTIR+P HMVE ++ +QL E GR P E+ + G S ++ +
Sbjct: 223 ITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPAEIGKEMGFSEDKVREIQ 282
Query: 410 LSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQV 469
+ P SL+ IG ++ + I D EA + +KE L VL TL RE +V
Sbjct: 283 KIAQDPVSLETPIGEEEDSHLGDFIPDDEAPAPSEAASYALLKEQLIDVLSTLTDREEKV 342
Query: 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+R RFGL+DGR +TL+E+G+ V+RERIRQIE+ A RKL++ R+K L Y
Sbjct: 343 LRLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDY 394
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 172/260 (66%), Gaps = 4/260 (1%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+WA AGV L + + GI KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 200 RWAELAGVTLEALDQMITEGIQAKDHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 259
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R EKFD ++G++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++++
Sbjct: 260 ERAVEKFDPTRGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQ 319
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEAET 441
E GR + E++A G++ ++ VLL + PR SL+ K+G ++ + +++ D ++ +
Sbjct: 320 EKGRTASIEDIAAELGMTAPQVREVLL--RVPRSVSLETKVGNEKDTELGDLLDDADSVS 377
Query: 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501
E+LL+++ + DL+++L L RER V+ RFGL DG +L EIG + +SRER+RQI
Sbjct: 378 PEELLMREALHRDLQQLLADLTSRERDVILMRFGLGDGHPYSLAEIGRALDLSRERVRQI 437
Query: 502 ESSAFRKLKNKKRTKHLMQY 521
E+ A +KL+ KR + Y
Sbjct: 438 EAKALQKLRQPKRRNRVRDY 457
>gi|124024644|ref|YP_001018951.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
gi|123964930|gb|ABM79686.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9303]
Length = 376
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 170/262 (64%), Gaps = 5/262 (1%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQEG
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQEGTL 171
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 172 GLERAVEKFDPARGFRFSTYAYWWIRQGITRAIATQSRTIRLPMHITEKLNRIKRVQQEI 231
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEA 439
S GR + ++A+A GLS + + L+ + PR SL+ +IG Q+ + +++ D A
Sbjct: 232 ASNQGRLASIADLAKALGLSEETVRLTLM--RVPRSISLETRIGQEQDSQLGDLLEDSNA 289
Query: 440 ETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIR 499
T E+ L + + DLE +LD L+ RE V+R RFGLED +TL +IGE M +SRER+R
Sbjct: 290 -TPEEKLTRDQLHNDLEILLDELSNREATVIRRRFGLEDDTPQTLTQIGEAMHLSRERVR 348
Query: 500 QIESSAFRKLKNKKRTKHLMQY 521
QIES A KL+ +R + Y
Sbjct: 349 QIESHALLKLRQPQRRCKVRDY 370
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 195/331 (58%), Gaps = 32/331 (9%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN Q I +L ++E LS G P+ +WA AG++
Sbjct: 89 RYLRL-----RIVLANAAKQGDEVIVPYQRLIEVQERLSSELGHRPSLERWATTAGIELS 143
Query: 275 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 NLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKP 430
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++ +
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLL--RVPRSVSLETKVGKDKDTEL 321
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
E++ + ++ T E++L+++ +++DL +LD L RER V+ RFGL DG +L EIG
Sbjct: 322 GELL-ETDSVTPEEMLMRESLQKDLHNLLDDLTSRERDVILMRFGLSDGHAYSLAEIGRA 380
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ +SRER+RQIES A +KL+ KR + Y
Sbjct: 381 LDLSRERVRQIESKALQKLRQPKRRNLIRDY 411
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 167/262 (63%), Gaps = 5/262 (1%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ WA D R+L+RRL G +D+MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 91 YQTWADLITSDSRDLQRRLREGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQEGTL 150
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD+++GF+FSTY++WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 151 GLERAVEKFDSTRGFRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEI 210
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKPSEVIADPEA 439
S GR + ++A +S + L + PR SL+ K+G +Q+ + E++ D A
Sbjct: 211 ASTEGRTASVTDLARELSVSEDTVRQTL--ARVPRSVSLETKVGRDQDTQLGELLEDEHA 268
Query: 440 ETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIR 499
T E L + + +DLE +LD L PRE V+R RFGLED +TL +IGE M +SRER+R
Sbjct: 269 -TPEQTLTRDALHDDLEHLLDELTPREATVIRCRFGLEDDTPRTLAQIGEDMNLSRERVR 327
Query: 500 QIESSAFRKLKNKKRTKHLMQY 521
QIE+ A KL+ +R + Y
Sbjct: 328 QIETRALLKLRQPQRRSKVRDY 349
>gi|375086568|ref|ZP_09732974.1| RNA polymerase sigma factor rpoD [Megamonas funiformis YIT 11815]
gi|374564707|gb|EHR35989.1| RNA polymerase sigma factor rpoD [Megamonas funiformis YIT 11815]
Length = 378
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 163/247 (65%), Gaps = 1/247 (0%)
Query: 276 LRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L +R+ G L + ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +K
Sbjct: 130 LAKRMEDGDLEAQKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNK 189
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
G+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL GR P+ EE+
Sbjct: 190 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQSLGREPSPEEI 249
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKED 454
A+ +S+ R+ ++ + P SL+ IG ++ + I D +A + +KE
Sbjct: 250 AKEMDVSVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDHDAPAPAEAASFVLLKEQ 309
Query: 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514
LE VLDTL RE +V+R RFGL+DGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R
Sbjct: 310 LEDVLDTLTEREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSR 369
Query: 515 TKHLMQY 521
+K L +
Sbjct: 370 SKKLKDF 376
>gi|332799075|ref|YP_004460574.1| RpoD subfamily RNA polymerase sigma-70 [Tepidanaerobacter
acetatoxydans Re1]
gi|438002181|ref|YP_007271924.1| RNA polymerase sigma factor RpoD [Tepidanaerobacter acetatoxydans
Re1]
gi|332696810|gb|AEE91267.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tepidanaerobacter
acetatoxydans Re1]
gi|432178975|emb|CCP25948.1| RNA polymerase sigma factor RpoD [Tepidanaerobacter acetatoxydans
Re1]
Length = 374
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 137 AKRRLAEANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLMKAVEKFDYKKGYKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE+AE L ++++
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQELGRDPLPEEIAEEMELPVEKV 256
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
++ + P SL IG ++ + I D EA D +KE LE VL+TL PR
Sbjct: 257 REIMKIAQEPVSLATPIGEEEDSFLGDFIPDDEALAPADAAAYLLLKEQLEDVLETLTPR 316
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E +V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++ R+K L +
Sbjct: 317 EEKVLRLRFGLDDGRPRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLKDF 372
>gi|164688461|ref|ZP_02212489.1| hypothetical protein CLOBAR_02106 [Clostridium bartlettii DSM
16795]
gi|164602874|gb|EDQ96339.1| Sigma-70 region 2 [Clostridium bartlettii DSM 16795]
Length = 306
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 157/237 (66%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K ++ SN+RLV+SIA+ Y M + DL+QEG GL+R AEKFD +KGFKFSTYA W
Sbjct: 65 VAKKILVESNLRLVVSIARKYARKEMAMLDLIQEGTLGLIRAAEKFDYTKGFKFSTYATW 124
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WIKQ + ++++DQSRTIR+P HMVE +V QL E GR P EE+A+ + +++
Sbjct: 125 WIKQGITRAIADQSRTIRVPVHMVEKINKVSTISSQLAKELGREPKPEEIAKRMHVPVEK 184
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 464
+ V+ + P+S++ IG + + +VI D EA + E+++ + +K+ +E VLDTL+
Sbjct: 185 VVQVIRISQRPQSIESTIGQEDDTELEQVIPDKEAHSPEEIVTRSLLKDQIEYVLDTLSE 244
Query: 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE+ V++ RFGL DG KTL+E+G V+RER RQIE A RKL + R+ L+ Y
Sbjct: 245 REKGVIKLRFGLGDGEKKTLEEVGRAFNVTRERARQIEKKALRKLAHPSRSNKLLDY 301
>gi|374340623|ref|YP_005097359.1| sigma-70 family RNA polymerase sigma factor [Marinitoga piezophila
KA3]
gi|372102157|gb|AEX86061.1| RNA polymerase sigma factor, sigma-70 family [Marinitoga piezophila
KA3]
Length = 419
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 162/235 (68%), Gaps = 2/235 (0%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+D++I +N+RLVISIAK Y G G++ DL+QEG GL++ KFD KGFKFSTYA WW
Sbjct: 174 ARDELIKANLRLVISIAKKYIGRGLSFLDLIQEGNIGLIKAVNKFDYKKGFKFSTYATWW 233
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE + + ++ E+G +P+ E++AE TG ++++
Sbjct: 234 IRQAITRAIADQARTIRIPVHMVETINKFNKIIREYLQEHGEYPSPEKLAELTGKPVEKV 293
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPS--EVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
+ +LL+ + S D +G + + + IAD + ++ +K ++E+LEK+LDTL
Sbjct: 294 NEILLTARETISADSPLGASDEDDSTIGDFIADDTLDKPAEVAMKMLLREELEKILDTLQ 353
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
PRE V++ R+GL DG++KTL+E+G+ V+RERIRQIE A RKL++ R+ L
Sbjct: 354 PREAMVLKMRYGLLDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSAQL 408
>gi|227495524|ref|ZP_03925840.1| sigma factor [Actinomyces coleocanis DSM 15436]
gi|226831071|gb|EEH63454.1| sigma factor [Actinomyces coleocanis DSM 15436]
Length = 505
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 165/249 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL+ ++ G L K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 255 RRELQILVHDGQLSKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDY 314
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P E
Sbjct: 315 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPE 374
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A+ ++ +++ V + P SL +G + + + ++I D EA D + ++
Sbjct: 375 ELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAIVPTDAVSFTLLQ 434
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
E L KVLDTL+ RE VV RFGL DG+ KTL EIG++ GV+RERIRQIES KL++
Sbjct: 435 EQLHKVLDTLSEREAGVVSMRFGLGDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHP 494
Query: 513 KRTKHLMQY 521
R++ L Y
Sbjct: 495 SRSQVLRDY 503
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 163/246 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+EL++ LN I K +M+ +N+RLVISIAK Y G++ DL+QEG GL++ EKF+
Sbjct: 368 HQELKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEY 427
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +KQL E GR P E
Sbjct: 428 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPE 487
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMK 452
E+A+ T +S+ R+ ++ + P SL ++G +++ + I D AE ++ ++
Sbjct: 488 EIADETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLR 547
Query: 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512
E ++ VL TL RER V+ RFGL DG +TL+E+G+ V+RERIRQIE+ A RK+++
Sbjct: 548 EKIKDVLGTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHP 607
Query: 513 KRTKHL 518
R +HL
Sbjct: 608 TRLRHL 613
>gi|120403451|ref|YP_953280.1| RNA polymerase sigma factor [Mycobacterium vanbaalenii PYR-1]
gi|119956269|gb|ABM13274.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 478
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L L+++ P AQ +R++ G
Sbjct: 190 LLNAEEEVELAKRIEAGLYATQLMAELADKGEKLPA-AQ--------RRDMMWICRDGDR 240
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 241 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 300
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 301 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 360
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
+ + P SLDQ IG + + + I D EA A D + +++ L+ VL+TL+ R
Sbjct: 361 LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSER 420
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
E VVR RFGL DG+ +TL EIG++ GV+RERIRQIES KL++ R++ L Y
Sbjct: 421 EAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDY 476
>gi|357058502|ref|ZP_09119353.1| RNA polymerase sigma factor rpoD [Selenomonas infelix ATCC 43532]
gi|355373830|gb|EHG21138.1| RNA polymerase sigma factor rpoD [Selenomonas infelix ATCC 43532]
Length = 383
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 150/226 (66%)
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WWI+QA+ +
Sbjct: 152 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITR 211
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE + +QL E GR P EEVA+ GLS R+ ++
Sbjct: 212 AIADQARTIRIPVHMVETINKYIRISRQLLQELGRDPTPEEVAKHMGLSTLRVREIMKIA 271
Query: 413 KAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRW 472
+ P SL+ IG ++ + I D A D +KE + +VL TL PRE +V+R
Sbjct: 272 QEPVSLETPIGEEEDSHLGDFIEDEAALDPADAASMMLLKEQISEVLKTLAPREAEVLRL 331
Query: 473 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518
RFGLEDGR +TL+E+G+ GV+RERIRQIE+ A RKL++ R + L
Sbjct: 332 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPVRLRKL 377
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 194/315 (61%), Gaps = 12/315 (3%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWA 266
+ +DP+R LL+A+EE++ + I+ L+ E ++++ +E + T
Sbjct: 92 IKINDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDADT----- 146
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
+R+L+ + G + K +++ +N+RLV+SIAK + G GM DL+QEG GL++
Sbjct: 147 ------ERQLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQEGNMGLMKA 200
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
+KFD +G+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E G
Sbjct: 201 VDKFDYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRQLTQELG 260
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446
R P EE+A+ ++ ++ +L + P SL+ +G + + I D E + +
Sbjct: 261 RDPLPEEIAKKMDITPDKVREILKISQDPISLESPVGEEDDSNLGDFIPDSETISPAEFA 320
Query: 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506
+ +K++L +VL+TL RE +V+R RFGL DGR +TL+E+G+ GV+RERIRQIE+ A
Sbjct: 321 SNELLKQELNEVLETLTDREERVLRLRFGLNDGRTRTLEEVGKEFGVTRERIRQIEAKAL 380
Query: 507 RKLKNKKRTKHLMQY 521
RKL++ R+K L +
Sbjct: 381 RKLRHPSRSKKLRDF 395
>gi|358464783|ref|ZP_09174741.1| RNA polymerase sigma factor RpoD [Streptococcus sp. oral taxon 058
str. F0407]
gi|419780173|ref|ZP_14306023.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK100]
gi|357066312|gb|EHI76462.1| RNA polymerase sigma factor RpoD [Streptococcus sp. oral taxon 058
str. F0407]
gi|383185332|gb|EIC77828.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK100]
Length = 369
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 185/305 (60%), Gaps = 14/305 (4%)
Query: 223 SSRLLTANEEMQLSAGIQDLL-----KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
S+R+L+A EE +LS +DL+ K+ + + G P +++EL
Sbjct: 70 SARVLSAEEEPELSD--EDLIGSTSAKVNDPVRMYLKEIGVVPLLTNE------EEKELA 121
Query: 278 RRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGF
Sbjct: 122 LAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGF 181
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE
Sbjct: 182 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAE 241
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
++ ++ +L + P SL+ IG + + I D E D + ++E L+
Sbjct: 242 RMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLD 301
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
+VLDTL RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL+ R+K
Sbjct: 302 EVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSK 361
Query: 517 HLMQY 521
L +
Sbjct: 362 PLRDF 366
>gi|339301170|ref|ZP_08650285.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
agalactiae ATCC 13813]
gi|319745370|gb|EFV97681.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
agalactiae ATCC 13813]
Length = 380
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 158/238 (66%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
++ K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGFKFSTYA
Sbjct: 140 LMAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYAT 199
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE ++
Sbjct: 200 WWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPD 259
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ +L + P SL+ IG + + I D E D + ++E L++VLDTL
Sbjct: 260 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLT 319
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 320 DREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKDF 377
>gi|154488794|ref|ZP_02029643.1| hypothetical protein BIFADO_02101 [Bifidobacterium adolescentis
L2-32]
gi|154082931|gb|EDN81976.1| RNA polymerase sigma factor RpoD [Bifidobacterium adolescentis
L2-32]
Length = 478
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 187/311 (60%), Gaps = 12/311 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 177 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 226
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 227 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 284
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 285 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPT 344
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 345 PDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAVAFSL 404
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES KL+
Sbjct: 405 LQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSKLR 464
Query: 511 NKKRTKHLMQY 521
+ R++ L +
Sbjct: 465 HPSRSQTLRDF 475
>gi|21910055|ref|NP_664323.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS315]
gi|28896247|ref|NP_802597.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes SSI-1]
gi|21904246|gb|AAM79126.1| putative RNA polymerase sigma 42 protein RpoD [Streptococcus
pyogenes MGAS315]
gi|28811498|dbj|BAC64430.1| putative RNA polymerase sigma 42 protein [Streptococcus pyogenes
SSI-1]
Length = 369
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 158/238 (66%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
++ K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGFKFSTYA
Sbjct: 129 LMAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYAT 188
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE ++
Sbjct: 189 WWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPD 248
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ +L + P SL+ IG + + I D E D + ++E L++VLDTL
Sbjct: 249 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLT 308
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 309 DREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDF 366
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + AN Q A + L+L ++E L+ G P+ +WAA AGV
Sbjct: 89 RYLRMRT-----VLANAAKQGDAVVSPYLRLIEVQERLASELGHRPSLERWAATAGVQLS 143
Query: 275 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPTLSEGKRRWAEIAKITVEELEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKP 430
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++ +
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQVREVLL--RVPRSVSLETKVGKDKDTEL 321
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
E++ + ++ T E++L+++ ++ DL+ +L L RER V+ RFGL DG +L EIG
Sbjct: 322 GELL-ETDSVTPEEMLMRESLQRDLQNLLADLTTRERDVILMRFGLADGHPYSLAEIGRA 380
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ +SRER+RQIES A +KL+ KR + Y
Sbjct: 381 LDLSRERVRQIESKALQKLRQPKRRNLIRDY 411
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 186/305 (60%), Gaps = 23/305 (7%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 284
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 285 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+CK D MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+A++++ GR N EE+A+
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANLEEIAQ 269
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
++ ++ VLL SL+ ++G ++ + +++ + T E+ L ++ + DL+
Sbjct: 270 ELEMTPDQVREVLLRVPKSISLETRVGKEKDTELGDLLETTDF-TPEERLTQESLSNDLQ 328
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
++L LN RER V+R RFGL DG++ +L EIG+++ +SRER+RQIE+ A +KL++ +R
Sbjct: 329 RLLLELNHRERDVIRMRFGLRDGQIYSLAEIGQVLDLSRERVRQIEAKALQKLRHPRRRN 388
Query: 517 HLMQY 521
+ Y
Sbjct: 389 QIRDY 393
>gi|270292885|ref|ZP_06199096.1| RNA polymerase sigma-70 factor [Streptococcus sp. M143]
gi|306825379|ref|ZP_07458719.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|315613017|ref|ZP_07887928.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
sanguinis ATCC 49296]
gi|322374450|ref|ZP_08048964.1| RNA polymerase sigma-70 factor [Streptococcus sp. C300]
gi|331266528|ref|YP_004326158.1| RNA polymerase sigma factor RpoD [Streptococcus oralis Uo5]
gi|401683403|ref|ZP_10815289.1| RNA polymerase sigma factor RpoD [Streptococcus sp. BS35b]
gi|406576460|ref|ZP_11052089.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD6S]
gi|406586450|ref|ZP_11061381.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD1S]
gi|414158353|ref|ZP_11414647.1| RNA polymerase sigma factor rpoD [Streptococcus sp. F0441]
gi|417794250|ref|ZP_12441508.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK255]
gi|418974693|ref|ZP_13522602.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK1074]
gi|419778983|ref|ZP_14304864.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK10]
gi|419813671|ref|ZP_14338484.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD2S]
gi|419817680|ref|ZP_14341829.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD4S]
gi|421488962|ref|ZP_15936350.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK304]
gi|270278864|gb|EFA24710.1| RNA polymerase sigma-70 factor [Streptococcus sp. M143]
gi|304432317|gb|EFM35293.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|315315127|gb|EFU63168.1| DNA-directed RNA polymerase sigma subunit RpoD [Streptococcus
sanguinis ATCC 49296]
gi|321279950|gb|EFX56989.1| RNA polymerase sigma-70 factor [Streptococcus sp. C300]
gi|326683200|emb|CBZ00818.1| RNA polymerase sigma factor RpoD (sigma-70 factor, Sigma-A)
[Streptococcus oralis Uo5]
gi|334270094|gb|EGL88501.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK255]
gi|383186747|gb|EIC79212.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK10]
gi|383348064|gb|EID26023.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK1074]
gi|400187481|gb|EJO21675.1| RNA polymerase sigma factor RpoD [Streptococcus sp. BS35b]
gi|400368179|gb|EJP21194.1| RNA polymerase sigma factor RpoD [Streptococcus oralis SK304]
gi|404461467|gb|EKA07398.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD6S]
gi|404465611|gb|EKA11029.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD4S]
gi|404472782|gb|EKA17197.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD2S]
gi|404474130|gb|EKA18450.1| RNA polymerase sigma factor RpoD [Streptococcus sp. GMD1S]
gi|410870898|gb|EKS18855.1| RNA polymerase sigma factor rpoD [Streptococcus sp. F0441]
Length = 369
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 185/305 (60%), Gaps = 14/305 (4%)
Query: 223 SSRLLTANEEMQLSAGIQDLL-----KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
S+R+L+A EE +LS +DL+ K+ + + G P +++EL
Sbjct: 70 SARVLSAEEEPELSD--EDLIGSTSAKVNDPVRMYLKEIGVVPLLTNE------EEKELA 121
Query: 278 RRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+ G I K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGF
Sbjct: 122 LAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGF 181
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE
Sbjct: 182 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAE 241
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 456
++ ++ +L + P SL+ IG + + I D E D + ++E L+
Sbjct: 242 RMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLD 301
Query: 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516
+VLDTL RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL+ R+K
Sbjct: 302 EVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSK 361
Query: 517 HLMQY 521
L +
Sbjct: 362 PLRDF 366
>gi|297199501|ref|ZP_06916898.1| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
gi|297147415|gb|EDY56986.2| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
Length = 428
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 178/296 (60%), Gaps = 13/296 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 144 LLTAVEEVELARRVEAGLFAE-------EKLSSTPDLDSQLAL------DLDRLVVLGRM 190
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 191 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 250
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L+ +R+
Sbjct: 251 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLAPERV 310
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465
VL + P SL +G ++ ++I D +A + + ++E LE VL TL R
Sbjct: 311 SEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGER 370
Query: 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
ER+VV+ R+GL DGR +TL+EIG + GV+RERIRQIES KL++ L Y
Sbjct: 371 ERKVVQLRYGLADGRARTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGY 426
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 194/331 (58%), Gaps = 32/331 (9%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + AN Q I L+L ++E LS G P+ +WA AG++
Sbjct: 85 RYLRMRT-----VLANAAKQGDEVIVPYLRLIEVQERLSSELGHRPSLERWATTAGIELP 139
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 140 DLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 199
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 200 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 259
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQNLKP 430
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++ +
Sbjct: 260 KIKKAQRKIAQEKGRTPTLEDLAIELEMTPAQVREVLL--RVPRSVSLETKVGKDKDTEL 317
Query: 431 SEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGEL 490
E++ + + T E++L+++ ++ DL +LD L RER V+ RFGL DG +L EIG
Sbjct: 318 GELL-ETDCVTPEEMLMRESLQRDLHNLLDDLTSRERDVILMRFGLSDGHPYSLAEIGRA 376
Query: 491 MGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
+ +SRER+RQIES A +KL+ KR + Y
Sbjct: 377 LDLSRERVRQIESKALQKLRQPKRRNLIRDY 407
>gi|295695448|ref|YP_003588686.1| RpoD subfamily RNA polymerase sigma-70 subunit [Kyrpidia tusciae
DSM 2912]
gi|295411050|gb|ADG05542.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kyrpidia tusciae
DSM 2912]
Length = 379
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K +I +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 130 ELAKRIEQGDEEAKAALIKANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFR 189
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 190 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPTPEE 249
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKE 453
+AE +S ++ ++ + P SL+ IG + + I D +A D + +KE
Sbjct: 250 IAEEMDMSPDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIPDDDALAPADAAAYELLKE 309
Query: 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
LE VLDTL RE V+R RFGL+DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 310 QLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS 369
Query: 514 RTKHLMQY 521
R+K L +
Sbjct: 370 RSKRLKDF 377
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 180/292 (61%), Gaps = 9/292 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L ++E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSEVIAD----PEAETAEDLLIKKFMKEDLEKVLDT 461
L + P SLD ++G NQ+ + E++ D PE T ++ F++ DL +L
Sbjct: 212 REYLNIARQPISLDVRVGDNQDTELQEMLEDHGLSPEHYTTQE-----FLRHDLNNLLAE 266
Query: 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513
L P++R+VV RFGLEDG +L ++G+ + +SRER+RQ+E A L+ ++
Sbjct: 267 LTPQQREVVILRFGLEDGNEMSLAKVGDRLNISRERVRQLEHQALTHLRRRR 318
>gi|119026029|ref|YP_909874.1| RNA polymerase sigma factor [Bifidobacterium adolescentis ATCC
15703]
gi|118765613|dbj|BAF39792.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
adolescentis ATCC 15703]
Length = 479
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 187/311 (60%), Gaps = 12/311 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 178 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 227
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 228 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 285
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 286 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPT 345
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKF 450
+E+A + ++++ V + P SL +G + + + ++I D +A D +
Sbjct: 346 PDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAVAFSL 405
Query: 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510
++E ++VL+TL+PRE V++ R+GLEDG+ KTL +IG + GV+RERIRQIES KL+
Sbjct: 406 LQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSKLR 465
Query: 511 NKKRTKHLMQY 521
+ R++ L +
Sbjct: 466 HPSRSQTLRDF 476
>gi|19745866|ref|NP_607002.1| RNA polymerase sigma factor RpoD [Streptococcus pyogenes MGAS8232]
gi|19748016|gb|AAL97501.1| putative RNA polymerase sigma 42 protein [Streptococcus pyogenes
MGAS8232]
Length = 369
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 158/238 (66%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
++ K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD SKGFKFSTYA
Sbjct: 129 LMAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYAT 188
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++ L E G+ P E++AE ++
Sbjct: 189 WWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPD 248
Query: 404 RLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 463
++ +L + P SL+ IG + + I D E D + ++E L++VLDTL
Sbjct: 249 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLT 308
Query: 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521
RE V+R RFGL+DG+M+TL+++G++ V+RERIRQIE+ A RKL++ R+K L +
Sbjct: 309 DREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDF 366
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,168,297,072
Number of Sequences: 23463169
Number of extensions: 274821820
Number of successful extensions: 951951
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11135
Number of HSP's successfully gapped in prelim test: 2101
Number of HSP's that attempted gapping in prelim test: 927761
Number of HSP's gapped (non-prelim): 16942
length of query: 525
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 378
effective length of database: 8,910,109,524
effective search space: 3368021400072
effective search space used: 3368021400072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 79 (35.0 bits)