Query 009803
Match_columns 525
No_of_seqs 432 out of 2431
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 1.6E-55 5.3E-60 469.3 36.2 313 210-523 92-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 1.7E-55 5.7E-60 469.1 28.0 313 210-523 77-423 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 4E-43 1.4E-47 389.7 -3.0 250 274-523 359-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 1.2E-36 4.1E-41 302.2 15.8 208 210-418 5-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 2.2E-32 7.5E-37 264.2 18.8 222 284-515 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 5.4E-32 1.8E-36 261.3 4.5 217 282-510 25-243 (243)
7 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 1.9E-23 6.4E-28 194.9 11.2 170 272-513 12-183 (184)
8 1or7_A Sigma-24, RNA polymeras 99.9 5.1E-23 1.8E-27 193.2 14.0 176 276-514 14-189 (194)
9 3mzy_A RNA polymerase sigma-H 99.9 8.5E-22 2.9E-26 178.9 13.5 154 309-516 1-159 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 1.2E-18 4.3E-23 160.1 0.7 142 287-516 3-144 (157)
11 1sig_A Sigma70, RNA polymerase 99.7 1.3E-16 4.6E-21 164.6 10.9 81 279-359 256-339 (339)
12 3n0r_A Response regulator; sig 99.6 2.6E-15 8.8E-20 151.4 9.4 143 282-514 18-160 (286)
13 3t72_q RNA polymerase sigma fa 99.6 1.7E-14 5.9E-19 123.9 10.9 80 445-524 3-82 (99)
14 3hug_A RNA polymerase sigma fa 99.3 1.1E-11 3.6E-16 104.1 11.4 75 439-517 15-89 (92)
15 1tty_A Sigma-A, RNA polymerase 99.3 4E-12 1.4E-16 105.9 7.4 71 453-523 10-80 (87)
16 1ku3_A Sigma factor SIGA; heli 99.3 1.9E-12 6.5E-17 104.1 3.8 68 455-522 4-72 (73)
17 2p7v_B Sigma-70, RNA polymeras 99.2 4.9E-12 1.7E-16 100.3 4.2 66 458-523 2-67 (68)
18 2o8x_A Probable RNA polymerase 99.0 5.6E-10 1.9E-14 87.9 7.3 64 451-518 5-68 (70)
19 2o7g_A Probable RNA polymerase 98.9 1.9E-09 6.7E-14 92.7 8.9 79 278-359 17-95 (112)
20 1h3l_A RNA polymerase sigma fa 98.9 1.5E-09 5E-14 89.2 6.3 76 281-358 8-83 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.8 1.2E-08 4E-13 89.3 9.9 68 446-517 9-77 (113)
22 1s7o_A Hypothetical UPF0122 pr 98.7 5.2E-08 1.8E-12 85.2 9.6 63 452-518 12-75 (113)
23 3clo_A Transcriptional regulat 98.6 5.5E-11 1.9E-15 117.7 -12.9 152 278-514 89-245 (258)
24 2rnj_A Response regulator prot 98.5 3.6E-08 1.2E-12 82.3 3.7 60 450-514 18-77 (91)
25 1x3u_A Transcriptional regulat 98.5 1.6E-07 5.6E-12 75.5 5.5 57 453-514 8-64 (79)
26 3c57_A Two component transcrip 98.5 2.4E-07 8.3E-12 78.1 6.6 58 452-514 18-75 (95)
27 1jhg_A Trp operon repressor; c 98.4 2.7E-07 9.1E-12 79.1 5.2 65 450-515 23-91 (101)
28 1je8_A Nitrate/nitrite respons 98.4 2.5E-07 8.6E-12 75.9 4.3 57 454-515 14-70 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.3E-06 4.4E-11 69.1 4.9 55 455-514 5-59 (74)
30 3ulq_B Transcriptional regulat 98.0 9.8E-06 3.3E-10 67.8 6.4 50 457-511 25-74 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 8.6E-06 2.9E-10 62.1 4.6 45 464-513 1-45 (61)
32 1p4w_A RCSB; solution structur 97.8 2.6E-05 8.8E-10 66.5 6.5 47 460-511 33-79 (99)
33 2q0o_A Probable transcriptiona 97.4 0.00026 8.8E-09 68.5 7.0 47 461-512 175-221 (236)
34 1l3l_A Transcriptional activat 97.4 0.00025 8.7E-09 68.5 6.8 46 461-511 173-218 (234)
35 3szt_A QCSR, quorum-sensing co 97.1 0.00064 2.2E-08 66.1 6.3 47 460-511 174-220 (237)
36 3qp6_A CVIR transcriptional re 97.0 0.00084 2.9E-08 66.5 6.3 46 461-511 197-242 (265)
37 1tc3_C Protein (TC3 transposas 96.9 0.0013 4.4E-08 46.7 5.4 40 461-504 5-44 (51)
38 2w7n_A TRFB transcriptional re 96.5 0.0061 2.1E-07 52.0 7.1 46 461-510 18-63 (101)
39 2x48_A CAG38821; archeal virus 96.1 0.0059 2E-07 45.2 4.3 38 463-505 18-55 (55)
40 1yio_A Response regulatory pro 95.9 0.016 5.6E-07 53.4 7.7 52 455-511 136-187 (208)
41 1a04_A Nitrate/nitrite respons 95.3 0.03 1E-06 51.9 7.0 47 460-511 153-199 (215)
42 3c3w_A Two component transcrip 95.1 0.029 1E-06 52.8 6.3 47 460-511 148-194 (225)
43 3klo_A Transcriptional regulat 94.6 0.027 9.4E-07 52.8 4.7 48 459-511 157-204 (225)
44 1qbj_A Protein (double-strande 94.5 0.072 2.5E-06 43.4 6.4 43 465-511 11-53 (81)
45 3p7n_A Sensor histidine kinase 94.0 0.14 4.8E-06 48.5 8.3 55 452-511 189-243 (258)
46 3iyd_F RNA polymerase sigma fa 93.9 0.016 5.4E-07 64.1 1.4 32 210-242 94-126 (613)
47 1qgp_A Protein (double strande 93.8 0.088 3E-06 42.3 5.5 44 464-511 14-57 (77)
48 1p2f_A Response regulator; DRR 93.7 0.085 2.9E-06 49.0 6.0 50 461-511 145-197 (220)
49 2oqr_A Sensory transduction pr 93.3 0.099 3.4E-06 48.8 5.7 50 461-511 156-210 (230)
50 2gwr_A DNA-binding response re 93.3 0.12 4.3E-06 48.7 6.4 50 461-511 153-207 (238)
51 1jko_C HIN recombinase, DNA-in 92.9 0.1 3.6E-06 37.0 4.1 38 462-504 6-44 (52)
52 1kgs_A DRRD, DNA binding respo 92.4 0.14 4.8E-06 47.4 5.4 50 461-511 151-205 (225)
53 2heo_A Z-DNA binding protein 1 92.3 0.21 7.1E-06 38.8 5.4 44 462-511 8-51 (67)
54 1ys7_A Transcriptional regulat 92.2 0.13 4.3E-06 48.0 4.8 50 461-511 159-213 (233)
55 3ugo_A RNA polymerase sigma fa 91.9 0.03 1E-06 54.9 0.0 51 455-510 192-244 (245)
56 3k2z_A LEXA repressor; winged 91.0 0.22 7.4E-06 46.6 5.0 42 461-502 2-45 (196)
57 1u78_A TC3 transposase, transp 90.9 0.3 1E-05 42.2 5.5 40 461-504 6-45 (141)
58 3r0a_A Putative transcriptiona 90.8 0.61 2.1E-05 40.3 7.4 49 457-511 19-68 (123)
59 2d1h_A ST1889, 109AA long hypo 90.7 0.55 1.9E-05 38.3 6.7 46 459-510 16-61 (109)
60 1pdn_C Protein (PRD paired); p 90.6 0.45 1.5E-05 40.0 6.2 41 461-505 17-57 (128)
61 2hqr_A Putative transcriptiona 90.5 0.11 3.7E-06 48.3 2.4 50 461-511 143-197 (223)
62 3r0j_A Possible two component 90.4 0.41 1.4E-05 45.5 6.5 50 461-511 176-230 (250)
63 3q9s_A DNA-binding response re 90.3 0.22 7.6E-06 47.7 4.4 50 461-511 182-236 (249)
64 1zx4_A P1 PARB, plasmid partit 89.5 0.46 1.6E-05 44.9 5.8 34 468-506 16-49 (192)
65 1k78_A Paired box protein PAX5 88.7 0.7 2.4E-05 40.7 6.2 42 461-506 32-73 (149)
66 2dbb_A Putative HTH-type trans 88.5 0.86 2.9E-05 40.3 6.6 46 459-511 4-49 (151)
67 2elh_A CG11849-PA, LD40883P; s 88.1 1.1 3.6E-05 36.3 6.4 24 482-505 39-62 (87)
68 2cfx_A HTH-type transcriptiona 87.6 0.95 3.3E-05 39.9 6.3 39 461-502 2-40 (144)
69 1oyi_A Double-stranded RNA-bin 87.5 0.42 1.4E-05 39.1 3.5 23 482-504 31-53 (82)
70 1i1g_A Transcriptional regulat 87.2 1.1 3.7E-05 39.0 6.4 43 462-511 2-44 (141)
71 3i4p_A Transcriptional regulat 87.1 0.9 3.1E-05 41.0 6.0 38 462-502 1-38 (162)
72 2w25_A Probable transcriptiona 86.5 1.2 3.9E-05 39.5 6.3 39 461-502 4-42 (150)
73 1q1h_A TFE, transcription fact 86.5 0.97 3.3E-05 37.8 5.5 45 461-511 15-59 (110)
74 2jn6_A Protein CGL2762, transp 86.4 1.1 3.9E-05 36.6 5.7 42 462-505 6-47 (97)
75 3kor_A Possible Trp repressor; 86.3 0.7 2.4E-05 40.4 4.5 35 460-500 60-94 (119)
76 2cyy_A Putative HTH-type trans 86.3 1.5 5.3E-05 38.7 7.0 39 461-502 4-42 (151)
77 2p5v_A Transcriptional regulat 86.2 1.2 4.1E-05 40.0 6.2 39 461-502 7-45 (162)
78 1ku9_A Hypothetical protein MJ 86.0 2.5 8.6E-05 36.1 8.1 48 453-502 13-62 (152)
79 2cg4_A Regulatory protein ASNC 85.9 1.7 5.7E-05 38.5 7.0 39 461-502 5-43 (152)
80 3bro_A Transcriptional regulat 85.5 3.8 0.00013 34.8 9.0 55 451-510 19-75 (141)
81 3cuo_A Uncharacterized HTH-typ 85.5 1.3 4.4E-05 35.7 5.6 49 455-510 14-63 (99)
82 2glo_A Brinker CG9653-PA; prot 85.5 1.6 5.4E-05 32.5 5.7 29 484-513 28-56 (59)
83 1sfx_A Conserved hypothetical 85.5 1.5 5.2E-05 35.5 6.1 43 461-510 17-59 (109)
84 2x4h_A Hypothetical protein SS 85.3 1.5 5.1E-05 37.8 6.3 48 459-510 8-56 (139)
85 3ech_A MEXR, multidrug resista 85.3 2 6.7E-05 37.0 7.0 51 451-504 20-74 (142)
86 1y0u_A Arsenical resistance op 85.3 5.3 0.00018 32.3 9.3 46 457-511 23-69 (96)
87 2w48_A Sorbitol operon regulat 85.1 0.85 2.9E-05 45.7 5.2 36 468-507 12-47 (315)
88 2o3f_A Putative HTH-type trans 85.0 2.3 7.8E-05 36.2 7.1 50 453-502 10-60 (111)
89 2htj_A P fimbrial regulatory p 85.0 1.9 6.5E-05 34.1 6.3 27 481-511 14-40 (81)
90 2fbh_A Transcriptional regulat 84.9 2.8 9.5E-05 35.8 7.8 50 452-503 23-74 (146)
91 3sqn_A Conserved domain protei 84.7 1.2 4E-05 47.7 6.3 107 386-509 30-136 (485)
92 2e1c_A Putative HTH-type trans 84.5 1.6 5.3E-05 40.0 6.3 39 461-502 24-62 (171)
93 2qvo_A Uncharacterized protein 84.3 1.1 3.7E-05 36.6 4.6 43 461-503 9-52 (95)
94 2pn6_A ST1022, 150AA long hypo 84.3 1.5 5.1E-05 38.6 5.9 43 462-511 1-43 (150)
95 3nqo_A MARR-family transcripti 84.2 3.1 0.00011 38.0 8.3 52 451-503 28-79 (189)
96 3eco_A MEPR; mutlidrug efflux 83.8 4.1 0.00014 34.6 8.4 53 451-504 16-70 (139)
97 3bpv_A Transcriptional regulat 83.4 4.1 0.00014 34.4 8.2 48 452-502 15-64 (138)
98 2k27_A Paired box protein PAX- 83.3 0.77 2.6E-05 41.0 3.6 40 461-504 25-64 (159)
99 3fm5_A Transcriptional regulat 83.3 4 0.00014 35.3 8.2 52 450-503 23-76 (150)
100 3bdd_A Regulatory protein MARR 83.2 4.3 0.00015 34.4 8.2 39 461-502 28-66 (142)
101 2ia0_A Putative HTH-type trans 83.1 1.9 6.6E-05 39.3 6.3 40 460-502 13-52 (171)
102 2gxg_A 146AA long hypothetical 83.0 4 0.00014 34.9 8.0 45 454-502 25-71 (146)
103 3ryp_A Catabolite gene activat 82.8 5.2 0.00018 36.1 9.1 48 460-511 136-193 (210)
104 2nnn_A Probable transcriptiona 82.8 3.2 0.00011 35.1 7.2 47 453-502 26-73 (140)
105 4hbl_A Transcriptional regulat 82.7 4.7 0.00016 34.9 8.5 49 453-504 28-78 (149)
106 1r1u_A CZRA, repressor protein 82.5 3.3 0.00011 34.3 7.0 50 454-511 15-65 (106)
107 2rdp_A Putative transcriptiona 82.3 4.8 0.00016 34.6 8.3 50 452-504 28-79 (150)
108 2fa5_A Transcriptional regulat 82.3 5.5 0.00019 34.8 8.8 50 452-504 34-86 (162)
109 2fu4_A Ferric uptake regulatio 81.9 3 0.0001 32.8 6.2 46 461-511 14-64 (83)
110 3oop_A LIN2960 protein; protei 81.8 3.5 0.00012 35.3 7.2 50 452-504 23-74 (143)
111 2jt1_A PEFI protein; solution 81.8 1.1 3.8E-05 36.0 3.6 24 479-502 22-45 (77)
112 2l0k_A Stage III sporulation p 81.6 1.7 5.9E-05 36.2 4.8 37 464-504 7-43 (93)
113 3iwf_A Transcription regulator 81.6 4.6 0.00016 34.2 7.6 51 452-502 5-56 (107)
114 2qww_A Transcriptional regulat 81.5 4.9 0.00017 34.7 8.1 48 454-504 29-78 (154)
115 1jgs_A Multiple antibiotic res 81.2 5.8 0.0002 33.5 8.3 51 451-504 19-71 (138)
116 1sfu_A 34L protein; protein/Z- 81.1 2.6 8.8E-05 33.8 5.4 25 479-503 27-51 (75)
117 3tgn_A ADC operon repressor AD 81.0 2.5 8.6E-05 36.3 5.9 39 461-503 35-73 (146)
118 2nyx_A Probable transcriptiona 80.7 4.5 0.00015 36.0 7.7 48 453-503 30-81 (168)
119 3boq_A Transcriptional regulat 80.7 2.5 8.6E-05 36.9 5.9 50 453-504 33-85 (160)
120 3bj6_A Transcriptional regulat 80.7 5.2 0.00018 34.4 8.0 47 453-502 27-75 (152)
121 3s2w_A Transcriptional regulat 80.6 3.8 0.00013 35.9 7.1 51 451-504 35-87 (159)
122 1s3j_A YUSO protein; structura 80.5 4.2 0.00014 35.2 7.3 48 453-503 24-73 (155)
123 3jth_A Transcription activator 80.4 3 0.0001 33.8 5.9 50 454-511 12-62 (98)
124 1uxc_A FRUR (1-57), fructose r 80.2 1.4 4.8E-05 34.1 3.5 23 482-504 1-23 (65)
125 3cjn_A Transcriptional regulat 80.0 3.8 0.00013 35.9 6.9 40 461-503 49-88 (162)
126 3g3z_A NMB1585, transcriptiona 79.7 6 0.00021 33.9 8.0 49 452-503 17-67 (145)
127 2gau_A Transcriptional regulat 79.7 6.2 0.00021 36.4 8.6 49 459-511 148-206 (232)
128 2oz6_A Virulence factor regula 79.7 7.8 0.00027 34.8 9.1 27 481-511 164-190 (207)
129 3cdh_A Transcriptional regulat 79.7 5.4 0.00019 34.6 7.8 49 452-503 29-79 (155)
130 3nrv_A Putative transcriptiona 79.5 3.5 0.00012 35.5 6.4 41 461-504 37-77 (148)
131 1lj9_A Transcriptional regulat 79.3 4.7 0.00016 34.4 7.1 50 451-503 14-65 (144)
132 3hsr_A HTH-type transcriptiona 79.3 3.7 0.00013 35.2 6.5 51 451-504 21-73 (140)
133 1u78_A TC3 transposase, transp 79.3 16 0.00056 30.8 10.7 77 389-504 23-102 (141)
134 3pqk_A Biofilm growth-associat 79.2 3.3 0.00011 33.9 5.8 50 454-511 12-62 (102)
135 2zkz_A Transcriptional repress 79.2 2.3 7.7E-05 35.1 4.8 38 463-503 26-63 (99)
136 2kko_A Possible transcriptiona 78.8 3.1 0.00011 34.8 5.6 49 455-511 15-64 (108)
137 2p5k_A Arginine repressor; DNA 78.8 3.5 0.00012 30.6 5.3 24 480-503 18-46 (64)
138 3k0l_A Repressor protein; heli 78.5 5.4 0.00019 35.0 7.5 51 451-504 31-83 (162)
139 1xmk_A Double-stranded RNA-spe 78.4 1.8 6E-05 35.1 3.7 36 465-503 12-48 (79)
140 1zug_A Phage 434 CRO protein; 78.2 2.7 9.3E-05 31.4 4.6 23 482-504 17-39 (71)
141 4b8x_A SCO5413, possible MARR- 78.0 5.5 0.00019 34.8 7.3 53 451-504 20-74 (147)
142 2a61_A Transcriptional regulat 78.0 3.7 0.00013 35.0 6.1 40 461-503 30-69 (145)
143 1r69_A Repressor protein CI; g 77.9 2.8 9.6E-05 31.1 4.6 23 482-504 15-37 (69)
144 2b0l_A GTP-sensing transcripti 77.9 1.6 5.3E-05 36.8 3.4 29 479-511 40-69 (102)
145 3dv8_A Transcriptional regulat 77.9 4.9 0.00017 36.6 7.2 48 460-511 144-195 (220)
146 3qq6_A HTH-type transcriptiona 77.8 2.7 9.4E-05 32.8 4.7 23 482-504 24-46 (78)
147 3deu_A Transcriptional regulat 77.7 6.1 0.00021 35.2 7.6 51 451-503 38-90 (166)
148 3b02_A Transcriptional regulat 77.7 8.1 0.00028 34.7 8.6 50 459-512 107-166 (195)
149 2xi8_A Putative transcription 77.3 2.7 9.1E-05 30.8 4.3 23 482-504 15-37 (66)
150 3f6w_A XRE-family like protein 77.1 2.5 8.6E-05 32.9 4.3 23 482-504 28-50 (83)
151 2oqg_A Possible transcriptiona 77.1 3.4 0.00012 34.2 5.3 48 455-510 11-59 (114)
152 2lkp_A Transcriptional regulat 77.1 5 0.00017 33.6 6.5 49 455-511 22-71 (119)
153 2pex_A Transcriptional regulat 77.0 3.7 0.00013 35.6 5.8 50 452-504 33-84 (153)
154 4ev0_A Transcription regulator 76.9 4.2 0.00014 36.9 6.4 28 480-511 162-189 (216)
155 2r1j_L Repressor protein C2; p 76.8 2.8 9.6E-05 30.9 4.3 23 482-504 19-41 (68)
156 4aik_A Transcriptional regulat 76.7 9.5 0.00033 33.5 8.5 50 452-503 17-68 (151)
157 1jhf_A LEXA repressor; LEXA SO 76.6 3.1 0.00011 38.4 5.5 42 460-503 2-48 (202)
158 2zcw_A TTHA1359, transcription 76.5 11 0.00038 33.9 9.2 49 459-511 114-172 (202)
159 2a6c_A Helix-turn-helix motif; 76.4 3 0.0001 32.9 4.6 23 482-504 32-54 (83)
160 2y75_A HTH-type transcriptiona 76.4 3.8 0.00013 35.1 5.6 30 478-511 23-52 (129)
161 2fbi_A Probable transcriptiona 76.4 3.2 0.00011 35.2 5.1 40 461-503 33-72 (142)
162 2k9q_A Uncharacterized protein 76.2 2.8 9.6E-05 32.3 4.3 23 482-504 16-38 (77)
163 3b7h_A Prophage LP1 protein 11 76.2 3.8 0.00013 31.3 5.0 23 482-504 21-43 (78)
164 3tqn_A Transcriptional regulat 76.2 2.1 7.1E-05 36.3 3.8 29 479-511 30-59 (113)
165 1ft9_A Carbon monoxide oxidati 76.2 2.2 7.4E-05 39.4 4.3 27 481-511 163-189 (222)
166 1y7y_A C.AHDI; helix-turn-heli 76.1 3.4 0.00012 31.1 4.7 23 482-504 27-49 (74)
167 1j1v_A Chromosomal replication 76.1 6 0.0002 32.8 6.5 41 465-513 34-75 (94)
168 4ham_A LMO2241 protein; struct 76.1 2 6.9E-05 37.4 3.8 29 479-511 35-64 (134)
169 2b5a_A C.BCLI; helix-turn-heli 76.0 3.4 0.00012 31.4 4.7 23 482-504 24-46 (77)
170 1p6r_A Penicillinase repressor 75.9 3.8 0.00013 32.2 5.1 41 460-503 5-49 (82)
171 4fx0_A Probable transcriptiona 75.8 7.8 0.00027 34.0 7.7 53 452-504 19-75 (148)
172 3e97_A Transcriptional regulat 75.7 2.3 7.8E-05 39.4 4.3 27 481-511 175-201 (231)
173 3fmy_A HTH-type transcriptiona 75.7 2.3 7.8E-05 32.9 3.6 23 482-504 25-47 (73)
174 2wiu_B HTH-type transcriptiona 75.7 4 0.00014 31.9 5.2 23 482-504 26-48 (88)
175 3kp7_A Transcriptional regulat 75.5 5.8 0.0002 34.3 6.7 47 453-503 25-73 (151)
176 3o9x_A Uncharacterized HTH-typ 75.4 7 0.00024 33.5 7.1 38 461-504 70-107 (133)
177 3frw_A Putative Trp repressor 75.4 9.1 0.00031 32.7 7.4 38 461-500 36-77 (107)
178 3kcc_A Catabolite gene activat 75.3 10 0.00034 36.0 8.9 27 481-511 217-243 (260)
179 1uly_A Hypothetical protein PH 75.2 4.4 0.00015 37.8 6.1 37 462-502 18-54 (192)
180 1u2w_A CADC repressor, cadmium 75.2 3.1 0.0001 35.6 4.6 45 456-503 33-78 (122)
181 2eth_A Transcriptional regulat 74.9 3.9 0.00013 35.6 5.4 40 461-503 41-80 (154)
182 2fmy_A COOA, carbon monoxide o 74.8 2.5 8.6E-05 38.8 4.3 28 480-511 166-193 (220)
183 3bja_A Transcriptional regulat 74.7 4 0.00014 34.4 5.3 49 452-503 19-69 (139)
184 1adr_A P22 C2 repressor; trans 74.4 3.4 0.00012 31.3 4.3 23 482-504 19-41 (76)
185 3iwz_A CAP-like, catabolite ac 74.4 15 0.0005 33.5 9.5 49 459-511 155-213 (230)
186 3eus_A DNA-binding protein; st 74.3 3.3 0.00011 32.9 4.4 23 482-504 28-50 (86)
187 2ek5_A Predicted transcription 74.1 2.7 9.4E-05 36.6 4.1 29 479-511 25-54 (129)
188 3d0s_A Transcriptional regulat 74.1 2.6 9E-05 38.8 4.2 27 481-511 177-203 (227)
189 2wte_A CSA3; antiviral protein 73.8 7.1 0.00024 37.8 7.4 47 458-511 146-192 (244)
190 1r1t_A Transcriptional repress 73.8 7.3 0.00025 33.4 6.7 49 455-511 36-85 (122)
191 4ghj_A Probable transcriptiona 73.8 3.7 0.00013 34.4 4.6 29 471-503 43-71 (101)
192 3s8q_A R-M controller protein; 73.7 4.1 0.00014 31.7 4.7 23 482-504 25-47 (82)
193 1j5y_A Transcriptional regulat 73.6 3.6 0.00012 37.9 5.0 38 464-503 21-58 (187)
194 3f3x_A Transcriptional regulat 73.6 11 0.00038 32.0 8.0 40 461-504 34-73 (144)
195 2ef8_A C.ECOT38IS, putative tr 73.3 4.2 0.00014 31.5 4.7 23 482-504 24-46 (84)
196 3by6_A Predicted transcription 73.3 2.7 9.1E-05 36.5 3.8 29 479-511 32-61 (126)
197 2hr3_A Probable transcriptiona 73.3 3.6 0.00012 35.3 4.6 40 462-503 33-72 (147)
198 3t76_A VANU, transcriptional r 73.2 4.1 0.00014 33.2 4.7 23 482-504 38-60 (88)
199 3la7_A Global nitrogen regulat 73.1 2.9 9.8E-05 39.4 4.3 28 480-511 192-219 (243)
200 3hyi_A Protein DUF199/WHIA; la 73.1 4.6 0.00016 40.5 5.9 43 459-504 241-283 (295)
201 3dkw_A DNR protein; CRP-FNR, H 73.0 2.4 8E-05 39.0 3.6 29 480-512 177-205 (227)
202 3e6c_C CPRK, cyclic nucleotide 72.9 2.9 9.9E-05 39.4 4.3 27 481-511 177-203 (250)
203 2k9s_A Arabinose operon regula 72.8 20 0.00068 29.3 9.0 37 374-410 5-42 (107)
204 3neu_A LIN1836 protein; struct 72.6 3.6 0.00012 35.5 4.4 29 479-511 34-63 (125)
205 2ppx_A AGR_C_3184P, uncharacte 72.5 4 0.00014 33.3 4.5 22 482-503 44-65 (99)
206 3e6m_A MARR family transcripti 72.4 8.4 0.00029 33.8 7.0 50 452-504 39-90 (161)
207 3oio_A Transcriptional regulat 72.4 21 0.00071 29.5 9.1 37 374-410 9-45 (113)
208 1on2_A Transcriptional regulat 72.3 5 0.00017 34.6 5.4 26 481-510 22-47 (142)
209 1ub9_A Hypothetical protein PH 72.2 3.8 0.00013 32.8 4.3 37 463-502 15-51 (100)
210 1hlv_A CENP-B, major centromer 72.2 7.7 0.00026 33.0 6.5 46 461-509 7-53 (131)
211 2ewt_A BLDD, putative DNA-bind 72.0 5.3 0.00018 29.8 4.8 23 482-504 22-46 (71)
212 2jt1_A PEFI protein; solution 72.0 5.3 0.00018 31.9 5.0 26 385-410 21-46 (77)
213 3fx3_A Cyclic nucleotide-bindi 72.0 2.2 7.4E-05 39.7 3.1 48 460-511 150-204 (237)
214 1x57_A Endothelial differentia 71.7 5.4 0.00019 31.7 5.1 23 482-504 27-49 (91)
215 3u2r_A Regulatory protein MARR 71.5 5.6 0.00019 35.2 5.7 53 451-504 31-85 (168)
216 3kz3_A Repressor protein CI; f 71.5 3.8 0.00013 31.9 4.0 23 482-504 26-48 (80)
217 1zyb_A Transcription regulator 71.4 2.9 9.9E-05 39.0 3.9 27 481-511 186-212 (232)
218 3bs3_A Putative DNA-binding pr 71.1 4.6 0.00016 30.6 4.3 23 482-504 24-46 (76)
219 1okr_A MECI, methicillin resis 71.0 3.7 0.00013 34.5 4.1 43 459-504 5-51 (123)
220 2g9w_A Conserved hypothetical 70.9 6.6 0.00023 34.1 5.9 44 459-504 4-51 (138)
221 1neq_A DNA-binding protein NER 70.7 3.6 0.00012 32.4 3.7 23 482-504 23-45 (74)
222 1ais_B TFB TFIIB, protein (tra 70.6 42 0.0014 30.7 11.7 80 293-409 11-90 (200)
223 2fbk_A Transcriptional regulat 70.6 5.3 0.00018 35.9 5.4 52 452-503 55-108 (181)
224 2pg4_A Uncharacterized protein 70.2 4.2 0.00014 32.8 4.1 23 481-503 30-53 (95)
225 3omt_A Uncharacterized protein 70.1 3.9 0.00013 31.1 3.7 23 482-504 22-44 (73)
226 2kpj_A SOS-response transcript 70.0 4.7 0.00016 32.4 4.3 23 482-504 23-45 (94)
227 3g5g_A Regulatory protein; tra 69.9 5.2 0.00018 32.9 4.7 23 482-504 42-64 (99)
228 1z91_A Organic hydroperoxide r 69.6 4.9 0.00017 34.4 4.7 47 455-504 29-77 (147)
229 1xn7_A Hypothetical protein YH 69.3 9 0.00031 30.6 5.8 23 481-503 16-38 (78)
230 3b73_A PHIH1 repressor-like pr 68.9 4.8 0.00016 34.4 4.3 39 462-503 11-51 (111)
231 2bv6_A MGRA, HTH-type transcri 68.9 3.4 0.00012 35.3 3.5 39 461-502 34-72 (142)
232 1tbx_A ORF F-93, hypothetical 68.7 4 0.00014 33.0 3.7 40 461-503 5-48 (99)
233 2hin_A GP39, repressor protein 68.4 4.2 0.00014 32.1 3.6 22 483-504 12-33 (71)
234 2o38_A Hypothetical protein; a 68.4 5.5 0.00019 34.2 4.7 32 469-504 45-76 (120)
235 2rn7_A IS629 ORFA; helix, all 68.4 3.4 0.00011 34.3 3.2 24 482-505 31-54 (108)
236 3f6o_A Probable transcriptiona 68.2 4.4 0.00015 34.3 4.0 49 455-511 8-57 (118)
237 3jw4_A Transcriptional regulat 67.9 5.8 0.0002 34.2 4.8 50 453-503 28-79 (148)
238 2fxa_A Protease production reg 67.7 12 0.00042 34.7 7.4 40 461-503 45-84 (207)
239 3rkx_A Biotin-[acetyl-COA-carb 67.6 4.7 0.00016 40.7 4.7 41 464-505 3-43 (323)
240 2frh_A SARA, staphylococcal ac 67.5 4.7 0.00016 34.4 4.0 49 453-502 24-74 (127)
241 2o0m_A Transcriptional regulat 67.3 1.1 3.9E-05 45.5 0.0 41 462-505 18-58 (345)
242 1z4h_A TORI, TOR inhibition pr 67.3 4.4 0.00015 30.9 3.4 25 481-505 10-34 (66)
243 3qwg_A ESX-1 secretion-associa 67.0 3.2 0.00011 36.1 2.8 36 467-503 11-51 (123)
244 1l9z_H Sigma factor SIGA; heli 66.5 59 0.002 34.2 13.0 24 387-410 394-417 (438)
245 3e7l_A Transcriptional regulat 66.5 7 0.00024 29.5 4.4 35 465-502 19-53 (63)
246 2l8n_A Transcriptional repress 66.5 2.4 8.3E-05 32.9 1.8 23 481-503 9-31 (67)
247 3vk0_A NHTF, transcriptional r 66.4 5.4 0.00019 33.4 4.2 23 482-504 35-57 (114)
248 1rzs_A Antirepressor, regulato 66.4 2.6 8.8E-05 31.7 1.9 21 482-502 11-31 (61)
249 1r71_A Transcriptional repress 66.3 7.6 0.00026 36.0 5.5 41 460-503 34-74 (178)
250 1hw1_A FADR, fatty acid metabo 66.3 5.2 0.00018 37.8 4.5 30 478-511 27-57 (239)
251 3op9_A PLI0006 protein; struct 66.2 7 0.00024 32.4 4.8 23 482-504 23-45 (114)
252 2wus_R RODZ, putative uncharac 66.1 6.5 0.00022 33.4 4.6 30 471-504 14-43 (112)
253 3c7j_A Transcriptional regulat 66.0 5.1 0.00017 38.3 4.4 30 478-511 46-75 (237)
254 1lmb_3 Protein (lambda repress 66.0 6.3 0.00022 31.2 4.3 23 482-504 31-53 (92)
255 3trb_A Virulence-associated pr 66.0 6.2 0.00021 33.0 4.4 22 482-503 28-49 (104)
256 2ict_A Antitoxin HIGA; helix-t 65.8 7.8 0.00027 30.9 4.9 23 482-504 22-44 (94)
257 3mlf_A Transcriptional regulat 65.8 7.2 0.00024 32.7 4.8 23 482-504 37-59 (111)
258 3sxy_A Transcriptional regulat 65.6 4.4 0.00015 37.9 3.8 30 478-511 32-61 (218)
259 2k02_A Ferrous iron transport 65.5 7.1 0.00024 32.1 4.5 22 481-502 16-37 (87)
260 1v4r_A Transcriptional repress 65.5 1.4 4.8E-05 36.4 0.2 29 479-511 32-61 (102)
261 3k2a_A Homeobox protein MEIS2; 65.4 22 0.00074 27.2 7.1 54 461-514 4-61 (67)
262 2bgc_A PRFA; bacterial infecti 65.3 3.9 0.00013 38.2 3.3 27 481-511 169-196 (238)
263 3pvv_A Chromosomal replication 65.3 14 0.00049 31.0 6.5 42 465-514 38-79 (101)
264 3hrs_A Metalloregulator SCAR; 65.0 11 0.00037 35.5 6.4 30 478-511 17-46 (214)
265 2auw_A Hypothetical protein NE 64.9 6.5 0.00022 36.3 4.6 33 468-504 94-126 (170)
266 2hwv_A DNA-binding response re 64.7 17 0.00057 31.0 7.0 50 461-511 43-97 (121)
267 3a03_A T-cell leukemia homeobo 64.6 15 0.00053 26.8 5.9 51 461-511 3-54 (56)
268 3kxa_A NGO0477 protein, putati 64.4 6.7 0.00023 34.6 4.5 31 470-504 74-104 (141)
269 1sd4_A Penicillinase repressor 64.4 8.7 0.0003 32.2 5.1 42 460-504 6-51 (126)
270 2dk5_A DNA-directed RNA polyme 64.4 7.5 0.00026 31.9 4.5 45 460-509 16-60 (91)
271 1b0n_A Protein (SINR protein); 64.1 7.8 0.00027 31.6 4.7 23 482-504 15-37 (111)
272 2ecc_A Homeobox and leucine zi 64.1 12 0.00041 29.9 5.5 52 461-512 9-61 (76)
273 2l49_A C protein; P2 bacteriop 64.1 6.7 0.00023 31.5 4.2 23 482-504 18-40 (99)
274 2vn2_A DNAD, chromosome replic 64.0 9.8 0.00034 32.9 5.5 44 461-504 29-74 (128)
275 2kfs_A Conserved hypothetical 63.5 4.1 0.00014 36.8 2.9 23 482-504 32-54 (148)
276 2jsc_A Transcriptional regulat 63.4 7.3 0.00025 33.0 4.5 40 464-511 21-60 (118)
277 2da1_A Alpha-fetoprotein enhan 63.1 22 0.00074 27.1 6.8 51 462-512 14-65 (70)
278 3t8r_A Staphylococcus aureus C 62.8 8.9 0.0003 33.8 5.0 30 478-511 25-54 (143)
279 2hzt_A Putative HTH-type trans 62.5 7.8 0.00027 32.1 4.4 44 455-502 4-49 (107)
280 2h09_A Transcriptional regulat 62.5 6.5 0.00022 34.4 4.1 26 482-511 55-80 (155)
281 1ylf_A RRF2 family protein; st 62.3 11 0.00037 33.4 5.5 30 478-511 27-56 (149)
282 3lwf_A LIN1550 protein, putati 62.2 13 0.00044 33.6 6.1 30 478-511 41-70 (159)
283 3mkl_A HTH-type transcriptiona 62.2 44 0.0015 27.8 9.2 35 376-410 11-45 (120)
284 3ivp_A Putative transposon-rel 62.1 10 0.00035 32.0 5.2 23 482-504 26-48 (126)
285 3bd1_A CRO protein; transcript 62.0 6.6 0.00023 30.4 3.6 23 483-505 13-35 (79)
286 2xrn_A HTH-type transcriptiona 61.0 7.9 0.00027 37.0 4.7 37 467-503 7-43 (241)
287 2k4j_A Putative transcriptiona 60.7 17 0.00058 30.7 6.3 50 461-511 41-95 (115)
288 3r1f_A ESX-1 secretion-associa 60.6 5.7 0.00019 34.9 3.3 39 464-503 10-53 (135)
289 2dmn_A Homeobox protein TGIF2L 60.5 24 0.00081 28.2 6.8 55 461-515 13-71 (83)
290 2p8t_A Hypothetical protein PH 60.3 12 0.0004 35.5 5.6 45 461-511 12-56 (200)
291 1bl0_A Protein (multiple antib 60.2 36 0.0012 28.8 8.4 37 374-410 13-49 (129)
292 1bia_A BIRA bifunctional prote 59.8 13 0.00044 37.3 6.2 40 463-505 4-43 (321)
293 3rjp_A COVR; winged helix-turn 59.8 21 0.00073 28.6 6.5 50 461-511 22-76 (96)
294 2di3_A Bacterial regulatory pr 59.8 8.4 0.00029 36.5 4.6 30 478-511 24-54 (239)
295 3f52_A CLP gene regulator (CLG 59.7 8 0.00027 32.2 4.0 23 482-504 42-64 (117)
296 3cec_A Putative antidote prote 59.7 9.2 0.00032 31.2 4.3 23 482-504 32-54 (104)
297 1b72_B Protein (PBX1); homeodo 59.6 34 0.0012 27.2 7.7 55 461-515 7-65 (87)
298 2hs5_A Putative transcriptiona 59.6 6.4 0.00022 37.6 3.8 30 478-511 48-77 (239)
299 3ihu_A Transcriptional regulat 59.4 6.6 0.00023 36.8 3.8 37 469-511 29-65 (222)
300 1mkm_A ICLR transcriptional re 59.4 8.8 0.0003 36.8 4.7 26 478-503 20-45 (249)
301 2jrt_A Uncharacterized protein 59.3 5.4 0.00019 33.2 2.7 37 466-505 37-73 (95)
302 1rr7_A Middle operon regulator 59.1 13 0.00043 32.6 5.3 39 464-508 81-119 (129)
303 1g2h_A Transcriptional regulat 58.9 12 0.00041 28.1 4.4 19 483-501 35-53 (61)
304 1o5l_A Transcriptional regulat 58.8 5.1 0.00017 36.7 2.8 27 481-511 164-190 (213)
305 1gxq_A PHOB, phosphate regulon 58.8 17 0.00058 29.9 5.8 50 461-511 31-85 (106)
306 1j9i_A GPNU1 DBD;, terminase s 58.2 5 0.00017 30.7 2.2 24 482-505 3-26 (68)
307 1ntc_A Protein (nitrogen regul 57.9 7.2 0.00025 31.7 3.3 36 464-502 50-85 (91)
308 2ao9_A Phage protein; structur 57.9 37 0.0013 30.7 8.3 45 459-503 21-70 (155)
309 1k61_A Mating-type protein alp 57.9 41 0.0014 24.7 7.3 51 461-511 4-58 (60)
310 3fym_A Putative uncharacterize 57.7 11 0.00038 32.5 4.7 24 482-505 17-40 (130)
311 2lnb_A Z-DNA-binding protein 1 57.5 8.1 0.00028 31.2 3.3 32 477-512 30-61 (80)
312 3lfp_A CSP231I C protein; tran 57.3 12 0.00041 30.2 4.6 23 482-504 15-41 (98)
313 1jgg_A Segmentation protein EV 57.2 23 0.00079 26.1 5.8 51 461-511 7-58 (60)
314 2wv0_A YVOA, HTH-type transcri 57.1 9.3 0.00032 36.6 4.4 29 479-511 31-60 (243)
315 2pmu_A Response regulator PHOP 56.7 17 0.00058 30.2 5.5 50 461-511 34-88 (110)
316 1ig7_A Homeotic protein MSX-1; 56.6 22 0.00074 26.0 5.5 51 461-511 6-57 (58)
317 2g7u_A Transcriptional regulat 56.6 13 0.00046 35.7 5.5 32 472-503 20-51 (257)
318 1yz8_P Pituitary homeobox 2; D 56.6 32 0.0011 26.1 6.6 53 461-513 9-62 (68)
319 3edp_A LIN2111 protein; APC883 56.4 8.4 0.00029 36.8 4.0 29 479-511 30-59 (236)
320 1rp3_A RNA polymerase sigma fa 56.2 1.2E+02 0.004 27.5 14.7 35 244-278 100-134 (239)
321 1y6u_A XIS, excisionase from t 56.2 6.9 0.00023 30.7 2.7 24 481-504 16-39 (70)
322 2cw1_A SN4M; lambda CRO fold, 56.2 6.5 0.00022 30.4 2.5 22 482-503 14-35 (65)
323 2hdd_A Protein (engrailed home 56.1 24 0.00081 26.1 5.7 51 461-511 9-60 (61)
324 1z7u_A Hypothetical protein EF 56.0 19 0.00065 29.9 5.8 44 455-502 12-57 (112)
325 1gdt_A GD resolvase, protein ( 55.9 11 0.00037 34.3 4.5 22 482-503 159-180 (183)
326 1vz0_A PARB, chromosome partit 55.8 16 0.00055 35.0 5.9 41 460-503 116-156 (230)
327 2jvl_A TRMBF1; coactivator, he 55.7 9.2 0.00032 31.8 3.7 23 482-504 50-72 (107)
328 2bnm_A Epoxidase; oxidoreducta 55.7 12 0.0004 34.1 4.7 23 482-504 24-46 (198)
329 3bwg_A Uncharacterized HTH-typ 55.6 9.2 0.00031 36.5 4.1 29 479-511 26-55 (239)
330 1opc_A OMPR, OMPRC; transcript 55.2 12 0.00041 31.0 4.3 50 461-511 31-85 (110)
331 1x2n_A Homeobox protein pknox1 55.2 21 0.00073 27.4 5.5 53 461-513 13-69 (73)
332 2pij_A Prophage PFL 6 CRO; tra 54.8 17 0.00056 26.9 4.7 20 483-502 15-34 (67)
333 3f8m_A GNTR-family protein tra 54.8 9.6 0.00033 36.7 4.1 30 478-511 32-62 (248)
334 3dn7_A Cyclic nucleotide bindi 54.7 6.3 0.00022 35.2 2.7 44 460-503 147-190 (194)
335 3eet_A Putative GNTR-family tr 54.6 11 0.00036 37.0 4.5 29 479-511 50-79 (272)
336 2dmq_A LIM/homeobox protein LH 54.5 25 0.00085 27.5 5.9 53 462-514 14-67 (80)
337 3rqi_A Response regulator prot 54.5 8.4 0.00029 34.3 3.4 39 461-502 139-177 (184)
338 1ahd_P Antennapedia protein mu 54.5 44 0.0015 25.4 7.1 53 461-513 8-61 (68)
339 1umq_A Photosynthetic apparatu 54.4 12 0.00041 30.2 3.9 19 483-501 56-74 (81)
340 4a0z_A Transcription factor FA 54.4 15 0.00051 34.2 5.2 35 464-501 12-46 (190)
341 2dmu_A Homeobox protein goosec 53.9 26 0.0009 26.7 5.8 51 462-512 14-65 (70)
342 1fx7_A Iron-dependent represso 53.8 6.3 0.00022 37.4 2.6 44 461-510 3-49 (230)
343 1stz_A Heat-inducible transcri 53.7 12 0.00039 38.1 4.7 40 462-502 15-59 (338)
344 1iuf_A Centromere ABP1 protein 53.5 7 0.00024 34.5 2.7 43 461-505 11-60 (144)
345 2k40_A Homeobox expressed in E 53.5 28 0.00095 26.3 5.8 53 461-513 7-60 (67)
346 1y9q_A Transcriptional regulat 53.5 13 0.00044 33.7 4.6 23 482-504 25-47 (192)
347 2gqq_A Leucine-responsive regu 53.4 1.4 4.9E-05 39.6 -2.0 43 462-511 11-53 (163)
348 2k27_A Paired box protein PAX- 53.1 78 0.0027 27.5 9.7 25 389-413 42-66 (159)
349 2da4_A Hypothetical protein DK 53.1 41 0.0014 26.3 7.0 51 462-512 15-70 (80)
350 2vz4_A Tipal, HTH-type transcr 53.0 8.1 0.00028 32.3 2.9 25 482-506 2-26 (108)
351 2eby_A Putative HTH-type trans 52.8 9.2 0.00031 31.6 3.2 23 482-504 25-47 (113)
352 1zq3_P PRD-4, homeotic bicoid 52.6 38 0.0013 25.7 6.5 54 461-514 8-62 (68)
353 2h1k_A IPF-1, pancreatic and d 52.6 32 0.0011 25.6 6.0 52 461-512 9-61 (63)
354 2o0y_A Transcriptional regulat 52.5 13 0.00043 36.0 4.6 25 479-503 36-60 (260)
355 2qq9_A Diphtheria toxin repres 52.2 10 0.00034 35.9 3.7 43 461-503 3-46 (226)
356 3a02_A Homeobox protein arista 52.0 22 0.00075 26.3 4.9 51 461-511 5-56 (60)
357 2e1o_A Homeobox protein PRH; D 52.0 28 0.00095 26.6 5.6 51 462-512 14-65 (70)
358 2r0q_C Putative transposon TN5 52.0 12 0.00042 34.7 4.2 31 468-503 167-197 (209)
359 3nau_A Zinc fingers and homeob 51.9 27 0.00093 27.1 5.5 51 462-512 11-62 (66)
360 3zq7_A KDP operon transcriptio 51.8 28 0.00096 28.2 6.0 50 461-511 28-82 (102)
361 1puf_B PRE-B-cell leukemia tra 51.8 33 0.0011 26.3 6.1 55 461-515 7-65 (73)
362 2f2e_A PA1607; transcription f 51.6 19 0.00064 31.7 5.2 23 481-503 37-59 (146)
363 3gbg_A TCP pilus virulence reg 51.5 1E+02 0.0035 29.1 10.9 35 376-410 173-207 (276)
364 2ia2_A Putative transcriptiona 51.3 14 0.00048 35.7 4.7 33 471-503 26-58 (265)
365 2cue_A Paired box protein PAX6 51.3 37 0.0013 26.6 6.4 54 462-515 14-68 (80)
366 1hkq_A REPA, replication prote 51.3 43 0.0015 28.9 7.4 57 455-511 12-77 (132)
367 3k69_A Putative transcription 51.2 12 0.00041 33.8 3.9 30 478-511 25-54 (162)
368 3mn2_A Probable ARAC family tr 51.2 26 0.00089 28.6 5.8 37 374-410 4-40 (108)
369 2k9l_A RNA polymerase sigma fa 51.1 82 0.0028 24.6 8.4 56 448-510 15-73 (76)
370 1akh_A Protein (mating-type pr 51.0 21 0.00072 26.4 4.7 48 461-508 11-59 (61)
371 1fjl_A Paired protein; DNA-bin 50.9 36 0.0012 26.7 6.3 53 461-513 24-77 (81)
372 2k9s_A Arabinose operon regula 50.7 37 0.0013 27.6 6.7 26 480-505 19-44 (107)
373 1nk2_P Homeobox protein VND; h 50.7 34 0.0012 26.7 6.1 54 462-515 16-70 (77)
374 1p4x_A Staphylococcal accessor 50.1 22 0.00076 34.3 5.9 43 461-504 155-197 (250)
375 1r8d_A Transcription activator 50.0 7.6 0.00026 32.5 2.2 25 482-506 3-27 (109)
376 2p5t_A Putative transcriptiona 49.9 3.4 0.00012 36.8 0.0 23 482-504 15-37 (158)
377 1b72_A Protein (homeobox prote 49.7 35 0.0012 27.9 6.3 54 461-514 40-94 (97)
378 1le8_B Mating-type protein alp 49.6 38 0.0013 26.9 6.3 57 462-518 9-69 (83)
379 3oou_A LIN2118 protein; protei 49.4 38 0.0013 27.6 6.5 72 300-401 12-83 (108)
380 2obp_A Putative DNA-binding pr 49.2 42 0.0014 27.8 6.6 43 460-502 12-57 (96)
381 3r4k_A Transcriptional regulat 48.5 11 0.00039 36.3 3.5 37 467-503 7-43 (260)
382 3mky_B Protein SOPB; partition 48.4 26 0.00089 32.8 5.8 45 459-504 21-65 (189)
383 2jml_A DNA binding domain/tran 48.3 11 0.00037 29.8 2.8 23 482-504 6-28 (81)
384 3mq0_A Transcriptional repress 48.3 10 0.00035 37.1 3.2 25 478-502 42-66 (275)
385 2p4w_A Transcriptional regulat 48.3 11 0.00039 35.3 3.3 48 456-511 6-54 (202)
386 1ic8_A Hepatocyte nuclear fact 48.2 49 0.0017 31.0 7.7 22 482-503 44-65 (194)
387 2jzy_A Transcriptional regulat 48.2 19 0.00063 30.2 4.4 49 461-510 28-81 (112)
388 3fm5_A Transcriptional regulat 47.9 56 0.0019 27.7 7.7 63 340-410 14-76 (150)
389 2ofy_A Putative XRE-family tra 47.9 12 0.0004 29.2 2.9 23 482-504 28-50 (86)
390 3oio_A Transcriptional regulat 47.5 40 0.0014 27.7 6.4 46 300-345 14-59 (113)
391 4ich_A Transcriptional regulat 47.4 13 0.00045 36.1 3.9 21 481-501 140-160 (311)
392 2da3_A Alpha-fetoprotein enhan 47.3 21 0.00073 27.8 4.4 51 462-512 24-75 (80)
393 1ftt_A TTF-1 HD, thyroid trans 47.1 39 0.0013 25.6 5.8 52 462-513 9-61 (68)
394 2v79_A DNA replication protein 47.0 26 0.00088 30.7 5.3 47 461-507 29-77 (135)
395 3lsg_A Two-component response 46.9 26 0.00088 28.3 5.0 25 481-505 19-43 (103)
396 3rkq_A Homeobox protein NKX-2. 46.8 34 0.0012 24.7 5.2 49 461-509 8-57 (58)
397 2fsw_A PG_0823 protein; alpha- 46.4 15 0.00052 30.3 3.5 42 457-502 17-60 (107)
398 2k4b_A Transcriptional regulat 46.1 9.2 0.00031 31.9 2.1 44 458-504 29-76 (99)
399 2fbh_A Transcriptional regulat 46.1 1.2E+02 0.0041 25.1 9.5 25 386-410 50-74 (146)
400 1eto_A FIS, factor for inversi 46.0 22 0.00076 29.5 4.5 34 465-501 58-91 (98)
401 3mn2_A Probable ARAC family tr 45.9 27 0.00091 28.5 5.0 25 481-505 18-42 (108)
402 3u1d_A Uncharacterized protein 45.9 30 0.001 31.2 5.6 50 457-511 21-72 (151)
403 1x3u_A Transcriptional regulat 45.8 40 0.0014 25.6 5.7 38 373-410 16-53 (79)
404 3t72_q RNA polymerase sigma fa 45.8 1.2E+02 0.0043 24.8 9.8 24 387-410 38-61 (99)
405 3bdn_A Lambda repressor; repre 45.6 11 0.00038 35.3 2.9 23 482-504 31-53 (236)
406 2dn0_A Zinc fingers and homeob 45.6 29 0.00098 27.0 4.9 52 461-512 14-66 (76)
407 3k2z_A LEXA repressor; winged 45.5 33 0.0011 31.4 6.1 37 374-410 10-46 (196)
408 1yyv_A Putative transcriptiona 45.5 17 0.00058 31.5 3.8 23 481-503 48-71 (131)
409 3f6v_A Possible transcriptiona 45.2 13 0.00046 33.1 3.2 47 457-511 50-97 (151)
410 1puf_A HOX-1.7, homeobox prote 45.2 46 0.0016 25.8 6.1 53 462-514 20-73 (77)
411 1uhs_A HOP, homeodomain only p 45.1 54 0.0018 25.0 6.4 53 461-513 7-61 (72)
412 3oou_A LIN2118 protein; protei 44.9 34 0.0012 27.8 5.5 37 374-410 7-43 (108)
413 2dmt_A Homeobox protein BARH-l 44.6 30 0.001 27.2 4.9 50 462-511 24-74 (80)
414 2dms_A Homeobox protein OTX2; 44.3 31 0.0011 27.0 4.9 52 462-513 14-66 (80)
415 3df8_A Possible HXLR family tr 44.0 25 0.00087 29.3 4.6 21 482-502 41-64 (111)
416 3lsg_A Two-component response 43.8 42 0.0015 27.0 5.9 35 376-410 6-41 (103)
417 2da2_A Alpha-fetoprotein enhan 43.6 27 0.00093 26.5 4.4 50 462-511 14-64 (70)
418 2hi3_A Homeodomain-only protei 43.5 57 0.002 25.0 6.3 53 461-513 8-62 (73)
419 1hqc_A RUVB; extended AAA-ATPa 43.2 29 0.00098 33.6 5.6 44 461-504 244-287 (324)
420 2h8r_A Hepatocyte nuclear fact 43.1 38 0.0013 32.5 6.1 23 482-504 45-67 (221)
421 1b8i_A Ultrabithorax, protein 42.7 46 0.0016 26.2 5.7 52 461-512 26-78 (81)
422 3deu_A Transcriptional regulat 42.7 66 0.0022 28.2 7.4 63 340-410 28-90 (166)
423 2l1p_A DNA-binding protein SAT 42.5 21 0.0007 29.1 3.5 23 482-504 33-55 (83)
424 3nrv_A Putative transcriptiona 42.4 40 0.0014 28.5 5.8 71 328-410 5-76 (148)
425 2dmp_A Zinc fingers and homeob 42.4 45 0.0015 26.9 5.7 52 461-512 19-71 (89)
426 3eco_A MEPR; mutlidrug efflux 42.3 51 0.0018 27.5 6.4 24 387-410 46-69 (139)
427 2ovg_A Phage lambda CRO; trans 41.8 21 0.00071 27.5 3.4 21 482-502 14-34 (66)
428 3mkl_A HTH-type transcriptiona 41.5 41 0.0014 28.0 5.6 44 301-345 15-58 (120)
429 2lk2_A Homeobox protein TGIF1; 41.5 54 0.0018 26.9 6.0 54 461-514 11-68 (89)
430 1d5y_A ROB transcription facto 41.1 58 0.002 31.0 7.4 33 247-279 7-39 (292)
431 1mnm_C Protein (MAT alpha-2 tr 40.5 44 0.0015 26.6 5.3 50 461-510 33-86 (87)
432 2m0c_A Homeobox protein arista 40.3 41 0.0014 25.7 5.0 51 462-512 16-67 (75)
433 2fjr_A Repressor protein CI; g 40.0 22 0.00076 32.0 3.9 22 483-504 22-43 (189)
434 1bw5_A ISL-1HD, insulin gene e 39.9 31 0.001 26.0 4.1 50 462-511 10-60 (66)
435 4dyq_A Gene 1 protein; GP1, oc 39.5 25 0.00085 30.8 4.0 40 462-505 13-53 (140)
436 3ic7_A Putative transcriptiona 39.4 2.5 8.6E-05 36.6 -2.6 29 479-511 32-61 (126)
437 3uj3_X DNA-invertase; helix-tu 39.3 6.3 0.00022 36.2 0.0 24 482-505 159-182 (193)
438 3plo_X DNA-invertase; resolvas 39.2 6.3 0.00022 36.3 0.0 25 482-506 159-183 (193)
439 3oop_A LIN2960 protein; protei 39.1 71 0.0024 26.8 6.8 62 340-410 12-73 (143)
440 2qlz_A Transcription factor PF 39.0 53 0.0018 31.4 6.5 23 481-503 178-200 (232)
441 2ly9_A Zinc fingers and homeob 39.0 28 0.00095 26.8 3.8 53 462-514 13-66 (74)
442 1tc3_C Protein (TC3 transposas 39.0 51 0.0018 21.8 4.9 24 389-412 22-45 (51)
443 3knw_A Putative transcriptiona 38.9 1.9E+02 0.0065 25.0 10.7 77 256-332 30-108 (212)
444 2r5y_A Homeotic protein sex co 38.6 55 0.0019 26.1 5.7 51 461-511 34-85 (88)
445 2cra_A Homeobox protein HOX-B1 38.6 28 0.00096 26.6 3.7 50 462-511 14-64 (70)
446 4aik_A Transcriptional regulat 38.4 1.2E+02 0.0041 26.1 8.4 26 385-410 43-68 (151)
447 2a6h_F RNA polymerase sigma fa 38.1 1.3E+02 0.0043 31.3 9.8 24 387-410 379-402 (423)
448 2vi6_A Homeobox protein nanog; 38.1 36 0.0012 25.2 4.2 50 461-510 9-59 (62)
449 4bbr_M Transcription initiatio 37.8 30 0.001 35.2 4.8 34 480-513 291-324 (345)
450 2z9m_A Response regulator YYCF 37.6 64 0.0022 27.0 6.2 50 461-511 36-90 (120)
451 2oa4_A SIR5; structure, struct 37.6 12 0.00042 31.5 1.5 24 482-505 51-74 (101)
452 1du6_A PBX1, homeobox protein 37.5 29 0.00099 25.9 3.6 50 461-510 9-62 (64)
453 2da5_A Zinc fingers and homeob 37.4 45 0.0015 25.9 4.8 51 462-512 14-65 (75)
454 1hsj_A Fusion protein consisti 37.4 36 0.0012 35.2 5.5 55 451-510 389-445 (487)
455 2fa5_A Transcriptional regulat 37.2 1E+02 0.0034 26.3 7.7 24 387-410 62-85 (162)
456 1z6r_A MLC protein; transcript 36.9 43 0.0015 34.1 5.9 38 467-507 19-56 (406)
457 2l7z_A Homeobox protein HOX-A1 36.4 42 0.0014 25.8 4.5 51 462-512 14-65 (73)
458 3bro_A Transcriptional regulat 36.3 74 0.0025 26.4 6.5 23 388-410 50-72 (141)
459 1ku3_A Sigma factor SIGA; heli 36.2 52 0.0018 24.8 5.0 24 387-410 29-52 (73)
460 2zhg_A Redox-sensitive transcr 35.8 18 0.00061 32.4 2.4 26 481-506 11-36 (154)
461 2djn_A Homeobox protein DLX-5; 35.0 30 0.001 26.4 3.3 50 462-511 14-64 (70)
462 2ra5_A Putative transcriptiona 34.9 8.1 0.00028 37.2 0.0 27 481-511 39-66 (247)
463 3hug_A RNA polymerase sigma fa 34.9 1.6E+02 0.0056 23.0 8.0 26 385-410 50-75 (92)
464 2kt0_A Nanog, homeobox protein 34.9 34 0.0012 27.0 3.8 50 462-511 29-79 (84)
465 2p7v_B Sigma-70, RNA polymeras 34.8 60 0.0021 24.1 5.0 24 387-410 24-47 (68)
466 3nar_A ZHX1, zinc fingers and 34.7 56 0.0019 26.6 5.2 52 461-512 31-83 (96)
467 3e6m_A MARR family transcripti 34.6 69 0.0024 27.6 6.2 23 388-410 67-89 (161)
468 2hqn_A Putative transcriptiona 34.4 20 0.00068 29.6 2.4 50 461-511 29-83 (109)
469 1bja_A Transcription regulator 34.2 65 0.0022 26.7 5.4 45 460-511 12-57 (95)
470 3gpv_A Transcriptional regulat 33.9 16 0.00056 32.4 1.9 25 482-506 17-41 (148)
471 1xn7_A Hypothetical protein YH 33.8 53 0.0018 26.0 4.7 23 388-410 16-38 (78)
472 1z05_A Transcriptional regulat 33.5 50 0.0017 34.0 5.8 38 467-507 42-79 (429)
473 3hot_A Transposable element ma 33.2 42 0.0014 32.9 5.0 36 466-505 11-53 (345)
474 2htj_A P fimbrial regulatory p 33.1 48 0.0017 25.6 4.4 23 388-410 14-36 (81)
475 3by6_A Predicted transcription 32.6 39 0.0013 28.9 4.0 25 387-411 34-58 (126)
476 3a01_A Homeodomain-containing 32.3 65 0.0022 26.1 5.2 53 462-514 24-77 (93)
477 1tty_A Sigma-A, RNA polymerase 32.0 63 0.0022 25.4 5.0 24 387-410 37-60 (87)
478 1bl0_A Protein (multiple antib 31.9 61 0.0021 27.3 5.2 42 303-344 21-62 (129)
479 4a5n_A Uncharacterized HTH-typ 31.4 41 0.0014 29.3 4.0 45 455-502 16-61 (131)
480 2xvc_A ESCRT-III, SSO0910; cel 31.3 86 0.0029 23.8 5.1 40 466-511 12-51 (59)
481 1b0n_A Protein (SINR protein); 31.3 39 0.0013 27.3 3.7 23 389-411 15-37 (111)
482 3m8j_A FOCB protein; all-alpha 31.2 1.5E+02 0.005 25.4 7.2 47 460-514 43-89 (111)
483 2da7_A Zinc finger homeobox pr 31.1 69 0.0023 25.3 4.8 42 465-506 15-57 (71)
484 3bqz_B HTH-type transcriptiona 31.0 41 0.0014 29.1 4.1 29 470-501 14-42 (194)
485 1je8_A Nitrate/nitrite respons 30.9 21 0.00072 28.1 1.9 26 385-410 33-58 (82)
486 2fe3_A Peroxide operon regulat 30.7 1.5E+02 0.0052 25.6 7.7 45 461-511 19-68 (145)
487 1qbj_A Protein (double-strande 30.6 76 0.0026 25.2 5.2 24 387-410 26-49 (81)
488 3f2g_A Alkylmercury lyase; MER 30.6 44 0.0015 32.0 4.3 35 374-410 24-58 (220)
489 2jpc_A SSRB; DNA binding prote 30.6 44 0.0015 24.0 3.5 25 386-410 11-35 (61)
490 2zcm_A Biofilm operon icaabcd 30.5 40 0.0014 29.4 3.9 26 473-501 22-47 (192)
491 2heo_A Z-DNA binding protein 1 30.3 49 0.0017 25.0 3.9 27 385-411 22-48 (67)
492 2l9r_A Homeobox protein NKX-3. 30.2 49 0.0017 25.6 3.8 51 461-511 10-61 (69)
493 1uxc_A FRUR (1-57), fructose r 30.1 38 0.0013 25.8 3.1 23 389-411 1-23 (65)
494 3vpr_A Transcriptional regulat 30.0 47 0.0016 29.0 4.3 22 481-502 23-44 (190)
495 3q9v_A DNA-binding response re 29.8 63 0.0022 27.9 5.0 50 461-511 60-114 (133)
496 3d1n_I POU domain, class 6, tr 29.8 62 0.0021 28.6 5.0 50 462-511 100-150 (151)
497 1mzb_A Ferric uptake regulatio 29.8 1.1E+02 0.0039 26.1 6.7 47 461-512 15-66 (136)
498 2yu3_A DNA-directed RNA polyme 29.7 70 0.0024 26.5 4.9 46 459-509 32-77 (95)
499 3knw_A Putative transcriptiona 29.5 48 0.0016 29.1 4.3 21 481-501 34-54 (212)
500 1jhf_A LEXA repressor; LEXA SO 29.4 88 0.003 28.4 6.2 32 379-410 16-48 (202)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=1.6e-55 Score=469.29 Aligned_cols=313 Identities=38% Similarity=0.625 Sum_probs=282.1
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHhHHH------------------HHHhhcCCCCchHHhHHh--
Q 009803 210 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE------------------VLSERCGGSPTFAQWAAA-- 268 (525)
Q Consensus 210 ~~d~l~-yl~~i~~~~~lLt~eEE~~L~~~iq~~~~le~~~~------------------~l~~~~g~~pt~~ewa~a-- 268 (525)
..|+++ ||++| +++||||++||++|+++|+.++.++.... ......|+.|+..+|+..
T Consensus 92 ~~d~~~~Yl~ei-~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 92 TSDPVRQYLHEI-GQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCChHHHHHHHh-ccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 468999 99999 99999999999999999998754432211 112235678888887432
Q ss_pred ----------hcCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCch
Q 009803 269 ----------AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338 (525)
Q Consensus 269 ----------~g~d~~~L~~~l~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rF 338 (525)
.|++...|...+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 2456678888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcC--CCHHHHHHHHhCCCCCC
Q 009803 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 416 (525)
Q Consensus 339 sTYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lg--is~~~v~~~l~~~~~~~ 416 (525)
+|||+||||+.|.++++++++++|+|.|+.+.+++++++++.+.+.+|+.|+.++||+.+| +++++|..++.....++
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999888999
Q ss_pred CcccccccccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHH
Q 009803 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496 (525)
Q Consensus 417 SLD~~i~~d~~~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~e 496 (525)
|+|.+++++++..+.+.+++....+|++.+....+...|..+|+.||+++|.||.+|||++||.++|++|||+.||||++
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~e 410 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRE 410 (438)
T ss_pred ccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHH
Confidence 99999887766677787777655678888888888999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHHHH-hHHhhchhhhhhc
Q 009803 497 RIRQIESSAFRKLK-NKKRTKHLMQYAI 523 (525)
Q Consensus 497 rVRqie~RALkKLR-~~l~~~~L~~yl~ 523 (525)
||||+++||++||| +.+....|++|+.
T Consensus 411 rVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 411 RIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999 8888889999974
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=1.7e-55 Score=469.13 Aligned_cols=313 Identities=39% Similarity=0.627 Sum_probs=274.6
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHhHHHH------------------HHhhcCCCCchHHhHH---
Q 009803 210 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV------------------LSERCGGSPTFAQWAA--- 267 (525)
Q Consensus 210 ~~d~l~-yl~~i~~~~~lLt~eEE~~L~~~iq~~~~le~~~~~------------------l~~~~g~~pt~~ewa~--- 267 (525)
..|+++ ||++| +++|+||++||++|+++|+.+..+...... .....|+.|+..+|+.
T Consensus 77 ~~d~~~~Yl~ei-~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 77 TSDPVRQYLHEI-GQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp THHHHHHHHHHH-HHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred CCcHHHHHHHHh-cccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 357999 99999 999999999999999999987543321111 0112345666555442
Q ss_pred ---------hhcCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCch
Q 009803 268 ---------AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338 (525)
Q Consensus 268 ---------a~g~d~~~L~~~l~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rF 338 (525)
+.+.+...|...+++|..|+++||.+|+++|++||++|.++|.+++|||||||+|||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 23556777888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcC--CCHHHHHHHHhCCCCCC
Q 009803 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 416 (525)
Q Consensus 339 sTYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lg--is~~~v~~~l~~~~~~~ 416 (525)
+|||+||||++|.++++++++++|+|.|+.+.+++++++++.+.+.+|+.|+.++||+.+| +++++|..++.....++
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998888899
Q ss_pred CcccccccccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHH
Q 009803 417 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 496 (525)
Q Consensus 417 SLD~~i~~d~~~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~e 496 (525)
|+|.+++++++..+.+.+++....+|++.+....+...|..+|+.||+++|.||.+|||++||.++|++|||+.||||++
T Consensus 316 Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~e 395 (423)
T 2a6h_F 316 SLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRE 395 (423)
T ss_dssp ESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHH
T ss_pred ccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHH
Confidence 99999987766677888887766689998888888999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHHH-hHHhhchhhhhhc
Q 009803 497 RIRQIESSAFRKLK-NKKRTKHLMQYAI 523 (525)
Q Consensus 497 rVRqie~RALkKLR-~~l~~~~L~~yl~ 523 (525)
||||++++|++||| +.+....|++|++
T Consensus 396 rVrqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 396 RIRQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 99999999999999 8888888999874
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=4e-43 Score=389.66 Aligned_cols=250 Identities=38% Similarity=0.669 Sum_probs=232.7
Q ss_pred HHHHHHHh-ccHHH---HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHH
Q 009803 274 RELRRRLN-YGILC---KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349 (525)
Q Consensus 274 ~~L~~~l~-~g~~A---~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqa 349 (525)
..|...++ |+..| ++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|+||++|||||+
T Consensus 359 ~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~ 438 (613)
T 3iyd_F 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 (613)
T ss_dssp HHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHH
Confidence 34444444 45666 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCC
Q 009803 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429 (525)
Q Consensus 350 I~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~ 429 (525)
|.++++++.+.+|+|.|+.+.+++++++.+.+.+++|+.||++|||+.+|+++++|..++.....++|++.+++++++..
T Consensus 439 i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~~ 518 (613)
T 3iyd_F 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 (613)
T ss_dssp HHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSCC
T ss_pred HHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877778
Q ss_pred CCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 009803 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509 (525)
Q Consensus 430 l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKL 509 (525)
+.+.+.+....+|++.+...++...|..+|+.||+++|.||.||||+++++.+|++|||+.||||++||+++++||+++|
T Consensus 519 l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kL 598 (613)
T 3iyd_F 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 598 (613)
T ss_dssp GGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 88888887777899998888888889999999999999999999997766679999999999999999999999999999
Q ss_pred HhHHhhchhhhhhc
Q 009803 510 KNKKRTKHLMQYAI 523 (525)
Q Consensus 510 R~~l~~~~L~~yl~ 523 (525)
|+++....|+.|++
T Consensus 599 R~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 599 RHPSRSEVLRSFLD 612 (613)
T ss_dssp TSCSSSCSSTTCC-
T ss_pred hCcchhhHHHHHhc
Confidence 99999999999986
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=1.2e-36 Score=302.18 Aligned_cols=208 Identities=38% Similarity=0.647 Sum_probs=130.8
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHH-HHhHHHHHHh-------------------------hcCCCCch
Q 009803 210 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLK-LEGLREVLSE-------------------------RCGGSPTF 262 (525)
Q Consensus 210 ~~d~l~-yl~~i~~~~~lLt~eEE~~L~~~iq~~~~-le~~~~~l~~-------------------------~~g~~pt~ 262 (525)
..||++ ||++| +++||||++||++|+++|+.++. .+.+...... ..+.+|+.
T Consensus 5 ~~d~~~~yl~~i-~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~ 83 (245)
T 3ugo_A 5 TSDPVRQYLHEI-GQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 83 (245)
T ss_dssp CCHHHHHHHHHH-TTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHH
T ss_pred CCCcHHHHHHHc-ccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchh
Confidence 478999 99999 99999999999999999999765 3333221100 02467899
Q ss_pred HHhHHhhcCC----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCch
Q 009803 263 AQWAAAAGVD----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338 (525)
Q Consensus 263 ~ewa~a~g~d----~~~L~~~l~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rF 338 (525)
.+||.+.|++ ...|.+..++|..|+++||..|.++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F 163 (245)
T 3ugo_A 84 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 163 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCH
T ss_pred HHHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcH
Confidence 9999998874 345667788899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcC--CCHHHHHHHHhCCCCCC
Q 009803 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 416 (525)
Q Consensus 339 sTYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lg--is~~~v~~~l~~~~~~~ 416 (525)
+||++||||++|.++++++.+.+++|.++.+.++++.++.+.|.+.+|+.||.+|||+.|| +|+.+|...+...+..+
T Consensus 164 ~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~l 243 (245)
T 3ugo_A 164 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 243 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998887777
Q ss_pred Cc
Q 009803 417 SL 418 (525)
Q Consensus 417 SL 418 (525)
||
T Consensus 244 sl 245 (245)
T 3ugo_A 244 SL 245 (245)
T ss_dssp --
T ss_pred CC
Confidence 75
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=100.00 E-value=2.2e-32 Score=264.25 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcccc
Q 009803 284 ILCKDKMITSNIRLVISIAKNYQ---GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360 (525)
Q Consensus 284 ~~A~e~Lv~~nlrLV~~IA~~y~---~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~r~ 360 (525)
..|+++|+..|.++|+++|++|. +++.+++||+|||+++||+++++|||.+|.+|.||+++||++.|.++++++.+
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~- 89 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDF- 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSST-
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCc-
Confidence 45899999999999999999998 67899999999999999999999999999999999999999999999998864
Q ss_pred eecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCC--CCCCCcccccccccCCCCCcccCCCC
Q 009803 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP--KAPRSLDQKIGINQNLKPSEVIADPE 438 (525)
Q Consensus 361 iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~--~~~~SLD~~i~~d~~~~l~d~l~d~~ 438 (525)
.|.+.....+++.++...+...+|+.|+.+++|..+|++++++..++... ....|+|.++.++++.. .+. +++
T Consensus 90 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~- 164 (239)
T 1rp3_A 90 --GSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS- 164 (239)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-
Confidence 67777788999999999999999999999999999999999998877533 22346665543322222 333 332
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 439 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 439 ~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
..+|++.+...+....|..+|+.||+++|.||.++|+.+ +|++|||+.||||.++|+++++||+++||+.+..
T Consensus 165 ~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEE----LPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTSC----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 346888888888889999999999999999999999877 9999999999999999999999999999998753
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=5.4e-32 Score=261.33 Aligned_cols=217 Identities=28% Similarity=0.449 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcccce
Q 009803 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361 (525)
Q Consensus 282 ~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~r~i 361 (525)
|+..|++.|+..|.++|+++|++|.++..+++||+|||++++|+++++|||.+|.+|.||+++|+++.+.++++++. .+
T Consensus 25 gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~ 103 (243)
T 1l0o_C 25 GDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TV 103 (243)
T ss_dssp ---------------------------------------------------------------------------CC-CC
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 55789999999999999999999999999999999999999999999999999899999999999999999999987 78
Q ss_pred ecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccC--CCCCcccCCCCC
Q 009803 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN--LKPSEVIADPEA 439 (525)
Q Consensus 362 RiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~--~~l~d~l~d~~~ 439 (525)
++|.++.....+++++...+.+..++.|+.++++..+|++.+.+...+.......|++.++.++++ .++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~----- 178 (243)
T 1l0o_C 104 KVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQI----- 178 (243)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC---------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchhhcc-----
Confidence 999999999999999999999999999999999999999999998887665557778776543321 2222322
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 440 ETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 440 ~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
|++.+...+....|..+|+.||+++|.||.++|+.+ +|++|||+.||||.++|++++++|+++||
T Consensus 179 --~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 179 --ADADEASWFDKIALKKAIEELDERERLIVYLRYYKD----QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -----------------------------------------------------------------------
T ss_pred --CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 222333445567789999999999999999999887 99999999999999999999999999997
No 7
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.89 E-value=1.9e-23 Score=194.87 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=142.1
Q ss_pred CHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHH
Q 009803 272 DQRELRR--RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349 (525)
Q Consensus 272 d~~~L~~--~l~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqa 349 (525)
+...|.. ...|+..|++.|+..|.+.|+.+|+++.++..+++|++||+++.+|+++++|++..| .|.+|++.++++.
T Consensus 12 ~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~ 90 (184)
T 2q1z_A 12 DWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNR 90 (184)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHH
Confidence 3444444 445669999999999999999999999999899999999999999999999998876 7999999999999
Q ss_pred HHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCC
Q 009803 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429 (525)
Q Consensus 350 I~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~ 429 (525)
+.++++++.+...+ +. ..
T Consensus 91 ~~d~~R~~~~~~~~-------------------------------------------------------~~------~~- 108 (184)
T 2q1z_A 91 RIDGLRKDRQPEPE-------------------------------------------------------DL------FW- 108 (184)
T ss_dssp CCTTTCSSSCCCCC-------------------------------------------------------CC------CC-
T ss_pred HHHHHHhhcccccc-------------------------------------------------------cc------cc-
Confidence 99988766541110 00 00
Q ss_pred CCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 009803 430 PSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509 (525)
Q Consensus 430 l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKL 509 (525)
..+ ...+|++.+...+....|..+|+.||+++|.||.++|..| +|++|||+.||||..+|+++++||+++|
T Consensus 109 ----~~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~eIA~~lgis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 109 ----GPD-SEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGD----LTHRELAAETGLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp ----CSS-CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSC----CSSCCSTTTCCCCCHHHHHHHHHHHHHH
T ss_pred ----cCC-CCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 011 1236777777777888899999999999999999999987 9999999999999999999999999999
Q ss_pred HhHH
Q 009803 510 KNKK 513 (525)
Q Consensus 510 R~~l 513 (525)
|+.+
T Consensus 180 r~~l 183 (184)
T 2q1z_A 180 RQHM 183 (184)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9864
No 8
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.89 E-value=5.1e-23 Score=193.19 Aligned_cols=176 Identities=16% Similarity=0.200 Sum_probs=134.1
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHH
Q 009803 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 355 (525)
Q Consensus 276 L~~~l~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir 355 (525)
+.....|+..|++.|+..|.+.|+++|++|.+ ..+++|++||+++++|+++++|++.. .|.+|++.++++.+.++++
T Consensus 14 ~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~d~~R 90 (194)
T 1or7_A 14 VERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAKNYLV 90 (194)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHHHHHH
Confidence 34444566999999999999999999999999 89999999999999999999999864 5999999999999999998
Q ss_pred hcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCCCCcccC
Q 009803 356 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIA 435 (525)
Q Consensus 356 ~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~ 435 (525)
++.+..+. .++.. . .. ..++. .+.+.
T Consensus 91 ~~~~~~~~----------------------------~~~~~--------~-~~-------~~~~~----------~~~~~ 116 (194)
T 1or7_A 91 AQGRRPPS----------------------------SDVDA--------I-EA-------ENFES----------GGALK 116 (194)
T ss_dssp HHTTCCTH----------------------------HHHHH--------H-HH-------HSCCS----------SCC--
T ss_pred HHhccCcc----------------------------ccccc--------c-cc-------ccccc----------ccccc
Confidence 87652111 00000 0 00 00000 00011
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 436 DPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 436 d~~~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
+. .+|++.+...+....|..+|+.||+++|.||.|+|+.| +|++|||+.||||..+|+++++||+++||+.+.
T Consensus 117 ~~--~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 117 EI--SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDG----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp --------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTC----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CC--CChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 13333333445567788999999999999999999887 999999999999999999999999999999774
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.87 E-value=8.5e-22 Score=178.89 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCC
Q 009803 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388 (525)
Q Consensus 309 g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~ 388 (525)
|.+++|++|||++++|+++.+||+.+ .+|.||+++++++.+.++++++.+..+.|..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999987 7899999999999999999987543222111
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCCCC----cccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCC
Q 009803 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS----EVIADPEAETAEDLLIKKFMKEDLEKVLD-TLN 463 (525)
Q Consensus 389 Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~l~----d~l~d~~~~~pee~~~~~~~~~~L~~aL~-~L~ 463 (525)
..++++.+..++....+. +.+.+ ...+|++.+...+....|..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYKS-SESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 011121111111111111 11222 22367777888888889999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhc
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~ 516 (525)
+++|.||. +|..| +|++|||+.||||.++|+++++||+++||+.+...
T Consensus 112 ~~~r~v~~-~~~~g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~ 159 (164)
T 3mzy_A 112 KFEKEVLT-YLIRG----YSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEE 159 (164)
T ss_dssp HHHHHHHH-HHTTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 77766 99999999999999999999999999999988754
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.70 E-value=1.2e-18 Score=160.12 Aligned_cols=142 Identities=9% Similarity=0.111 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcccceecccc
Q 009803 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 366 (525)
Q Consensus 287 ~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~r~iRiP~~ 366 (525)
++.|+..|.+.|+.+|.++.++..+++|++||+|+.+|+++++|++. ..|.+|++..++|.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccCc-------
Confidence 56789999999999999999998999999999999999999999975 369999999999999998865310
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCCCCcccCCCCCCCHHHHH
Q 009803 367 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 446 (525)
Q Consensus 367 ~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~d~~~~~pee~~ 446 (525)
+ +.. . + ..
T Consensus 74 ----------------------~-----------------------------------~~~--~-e---~~--------- 81 (157)
T 2lfw_A 74 ----------------------Q-----------------------------------TSQ--S-D---AE--------- 81 (157)
T ss_dssp ----------------------C-----------------------------------CCC--C-S---CS---------
T ss_pred ----------------------c-----------------------------------cCC--c-c---hH---------
Confidence 0 000 0 0 00
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhc
Q 009803 447 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516 (525)
Q Consensus 447 ~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~ 516 (525)
+....|..+|+.||+++|+||.|+|..| +|++|||+.||||..+|+++++||+++||+.+...
T Consensus 82 ---~~~~~l~~~l~~Lp~~~r~vl~L~~~~g----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 82 ---GTEAVARARLARMTPLSRQALLLTAMEG----FSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp ---SSSSTTTTTTTTSCTTHHHHHTTTSSSC----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0112466789999999999999999887 99999999999999999999999999999977543
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.67 E-value=1.3e-16 Score=164.57 Aligned_cols=81 Identities=47% Similarity=0.849 Sum_probs=74.5
Q ss_pred HHhccH---HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHH
Q 009803 279 RLNYGI---LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 355 (525)
Q Consensus 279 ~l~~g~---~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir 355 (525)
...|+. .|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|+|.+|++|+||++|||||.|.++++
T Consensus 256 ~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr 335 (339)
T 1sig_A 256 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 335 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 334456 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 009803 356 DQSR 359 (525)
Q Consensus 356 ~~~r 359 (525)
++.+
T Consensus 336 ~~~r 339 (339)
T 1sig_A 336 DQAR 339 (339)
T ss_dssp HC--
T ss_pred HhcC
Confidence 8753
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.58 E-value=2.6e-15 Score=151.39 Aligned_cols=143 Identities=12% Similarity=0.054 Sum_probs=118.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcccce
Q 009803 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361 (525)
Q Consensus 282 ~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~r~i 361 (525)
++..+|++|+..|.+.++.+|++|.++..+++|++||.|+.+|+...+|++. ..|.+|++.+++|.+.++++....
T Consensus 18 g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~-- 93 (286)
T 3n0r_A 18 GSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEV-- 93 (286)
T ss_dssp --CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC------
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccccc--
Confidence 4567899999999999999999999998999999999999999999999874 469999999999998876542100
Q ss_pred ecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCCCCcccCCCCCCC
Q 009803 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 441 (525)
Q Consensus 362 RiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~d~~~~~ 441 (525)
+ .. ....
T Consensus 94 ---------------------------~----------------------------------~~---------~~~~--- 100 (286)
T 3n0r_A 94 ---------------------------G----------------------------------HD---------QGLH--- 100 (286)
T ss_dssp ---------------------------C----------------------------------CC---------CCCC---
T ss_pred ---------------------------C----------------------------------CC---------cccc---
Confidence 0 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 442 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 442 pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
....|..+|+.||+++|+||.|+|..+ +|++|||+.+|+|..+|+....+|+++|+..+.
T Consensus 101 ---------~~~~l~~al~~Lp~~~R~v~~L~~~eg----~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 101 ---------AGDDAAQRLMRIAPRSRQAFLLTALEG----FTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp ---------TTSHHHHHHHHHSCHHHHHHHHHHTTC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ---------hHHHHHHHHHhCCHHHeeEEEEEeeCC----CCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 012478899999999999999999988 999999999999999999999999999997653
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.55 E-value=1.7e-14 Score=123.85 Aligned_cols=80 Identities=36% Similarity=0.530 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhchhhhhhcC
Q 009803 445 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524 (525)
Q Consensus 445 ~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~L~~yl~~ 524 (525)
.+...++...|..+|+.||+++|.||.+|||++|++++|++|||+.||||++||++++.+|+++||+.+....|++|+..
T Consensus 3 ~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~~ 82 (99)
T 3t72_q 3 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSSG 82 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566778899999999999999999999998777779999999999999999999999999999999999999999865
No 14
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.32 E-value=1.1e-11 Score=104.14 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhch
Q 009803 439 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517 (525)
Q Consensus 439 ~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~ 517 (525)
..+|++.+...+....|..+|..||+++|+||.|+|..+ +|++|||+.||||..+|+++++||+++||+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRG----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHTSC----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 347899999999999999999999999999999999887 999999999999999999999999999999887543
No 15
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.29 E-value=4e-12 Score=105.88 Aligned_cols=71 Identities=55% Similarity=0.826 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhchhhhhhc
Q 009803 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523 (525)
Q Consensus 453 ~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~L~~yl~ 523 (525)
..|..+|+.||+++|.||.++|+++|+..+|++|||+.||||.++|++++.+|+++||..+....++.|+.
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~ 80 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLS 80 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35788999999999999999999766566999999999999999999999999999999988888877764
No 16
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.26 E-value=1.9e-12 Score=104.07 Aligned_cols=68 Identities=53% Similarity=0.807 Sum_probs=54.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-hHHhhchhhhhh
Q 009803 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK-NKKRTKHLMQYA 522 (525)
Q Consensus 455 L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR-~~l~~~~L~~yl 522 (525)
|..+|+.||+++++||.++|+++|+..+|++|||+.||+|.++|++++.+|+++|| ..+....++.|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45678899999999999999976556699999999999999999999999999999 888888888876
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.23 E-value=4.9e-12 Score=100.28 Aligned_cols=66 Identities=44% Similarity=0.674 Sum_probs=59.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhchhhhhhc
Q 009803 458 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523 (525)
Q Consensus 458 aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~L~~yl~ 523 (525)
+|+.||++|++||.++||++|...+|++|||+.||+|.++|++++++|++|||..+....+..|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999998755455999999999999999999999999999999999888888864
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.01 E-value=5.6e-10 Score=87.86 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhchh
Q 009803 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518 (525)
Q Consensus 451 ~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~L 518 (525)
....|..+|+.||++++.||.++|..+ +|++|||+.||+|..+|+++.++|+++||+.+....+
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~~~g----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQLLG----LSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHTSC----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 446788899999999999999999877 9999999999999999999999999999998876543
No 19
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.95 E-value=1.9e-09 Score=92.66 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhc
Q 009803 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 357 (525)
Q Consensus 278 ~~l~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~ 357 (525)
....++..|++.|+..|.+.++.+|.++ ++..+++|++||+++.+|+.+.+|++. ..|.+|++..+++.+.++++++
T Consensus 17 ~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~ 93 (112)
T 2o7g_A 17 SAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADHIRHV 93 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 3345668999999999999999999999 888899999999999999999999964 3799999999999999999876
Q ss_pred cc
Q 009803 358 SR 359 (525)
Q Consensus 358 ~r 359 (525)
.+
T Consensus 94 ~~ 95 (112)
T 2o7g_A 94 RS 95 (112)
T ss_dssp --
T ss_pred hc
Confidence 65
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.91 E-value=1.5e-09 Score=89.20 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=68.2
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcc
Q 009803 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358 (525)
Q Consensus 281 ~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~ 358 (525)
.++..+++.|+..|.+.++.+|.++.++..+++|++||+++.+|+.+++|++. ..|.+|++.++++.+.++++++.
T Consensus 8 ~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 8 AERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 35688999999999999999999999998999999999999999999999975 47999999999999999887654
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.84 E-value=1.2e-08 Score=89.26 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhch
Q 009803 446 LIKKFMKEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 517 (525)
Q Consensus 446 ~~~~~~~~~L~~aL-~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~ 517 (525)
+........+..++ ..||+++|.||.++|..| +|++|||+.||+|..+|+.+.+||+++||..+....
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~ 77 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYLED----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLE 77 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSC----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566788899 999999999999999887 999999999999999999999999999999886543
No 22
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.70 E-value=5.2e-08 Score=85.24 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=56.8
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhchh
Q 009803 452 KEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518 (525)
Q Consensus 452 ~~~L~~aL-~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~L 518 (525)
...+..++ ..||++++.||.++|..| +|++|||+.||+|..+|+.+.++|+++||..+...++
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y~~g----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYYADD----YSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHTC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45677788 899999999999999987 9999999999999999999999999999998865443
No 23
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.64 E-value=5.5e-11 Score=117.75 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=107.9
Q ss_pred HHHhcc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHH
Q 009803 278 RRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV----QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352 (525)
Q Consensus 278 ~~l~~g-~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLI----QEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~ 352 (525)
.+++.+ ..+++.+...+.+++..+............|+. ||.++.+|+.+..|++.. .|.+|++..+++.+.+
T Consensus 89 ~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~~~d 166 (258)
T 3clo_A 89 RRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSLSAD 166 (258)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEECSC
T ss_pred HhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHHHcc
Confidence 334434 678999999999999999888777777788886 999999999999998653 5788777655554433
Q ss_pred HHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCCCCc
Q 009803 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSE 432 (525)
Q Consensus 353 ~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~l~d 432 (525)
+.+... +...+..... .+
T Consensus 167 ~~r~~~-----------------------------------------------------------~~~~~~~~~~---~~ 184 (258)
T 3clo_A 167 QRPEQG-----------------------------------------------------------IYATITQMER---GE 184 (258)
T ss_dssp CCCCSS-----------------------------------------------------------CCCEEEETTT---TE
T ss_pred hhhhhH-----------------------------------------------------------HHHHHHhhcc---cc
Confidence 211000 0000000000 00
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 433 VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 433 ~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
.... . .+..++..||+++|+||.|+ ..| +|.+|||+.||+|..||+.+.+||++|||..
T Consensus 185 ~~~~-----~-----------~~~~~~~~L~~~erevl~L~-~~G----~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 185 VETL-----S-----------LSEEHRNILSEREKEILRCI-RKG----LSSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp EEEC-----C-----------CHHHHTTSSCHHHHHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred cccc-----h-----------hhHHHHccCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 0000 0 14556789999999999998 455 9999999999999999999999999999975
Q ss_pred Hh
Q 009803 513 KR 514 (525)
Q Consensus 513 l~ 514 (525)
..
T Consensus 244 ~~ 245 (258)
T 3clo_A 244 NS 245 (258)
T ss_dssp SH
T ss_pred CH
Confidence 44
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.54 E-value=3.6e-08 Score=82.31 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 450 FMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 450 ~~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
.....+..++..||++|++||.+ |..| +|.+|||+.||||..+|+.++.++++||+....
T Consensus 18 ~~~~~l~~~l~~Lt~~e~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 18 SHMKKRAELYEMLTEREMEILLL-IAKG----YSNQEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp -------CTGGGCCSHHHHHHHH-HHTT----CCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 34456888999999999999999 5555 999999999999999999999999999986433
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.46 E-value=1.6e-07 Score=75.49 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 453 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 453 ~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
..+..++..||++|++||.+ |..+ +|.+|||+.||+|..+|+++..++++||+....
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSA-VVAG----LPNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-HTTT----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 45788899999999999999 5555 999999999999999999999999999986443
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.45 E-value=2.4e-07 Score=78.11 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 452 ~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
...|..++..|+++|++||.++ ..| +|++|||+.||||..+|+.++.++++||+....
T Consensus 18 ~~~l~~~l~~Lt~~e~~vl~l~-~~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 18 GSHMQDPLSGLTDQERTLLGLL-SEG----LTNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp ---------CCCHHHHHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 4567889999999999999996 555 999999999999999999999999999987543
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.38 E-value=2.7e-07 Score=79.14 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHhcCC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 450 FMKEDLEKVL-DTLNPRERQVVRWRFGLED---GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 450 ~~~~~L~~aL-~~L~~rER~VL~lRygl~~---g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
.-.+.+..++ +.|+++|+.+|.+|||+.+ +.++|+.|||+.+|+|+.+|..+ +|+|++|...++.
T Consensus 23 ~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~ 91 (101)
T 1jhg_A 23 YQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQ 91 (101)
T ss_dssp HHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHH
Confidence 3344567777 6799999999999999853 34599999999999999999999 8999999876553
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.36 E-value=2.5e-07 Score=75.91 Aligned_cols=57 Identities=19% Similarity=0.361 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 454 DLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 454 ~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
.+..++..|+++|++||.+ |..| +|.+|||+.||||..+|+.+..++++||+.....
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 70 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKL-IAQG----LPNKMIARRLDITESTVKVHVKHMLKKMKLKSRV 70 (82)
T ss_dssp ---CCGGGSCHHHHHHHHH-HTTT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHccCCHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 3567789999999999999 5555 9999999999999999999999999999875543
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.19 E-value=1.3e-06 Score=69.10 Aligned_cols=55 Identities=31% Similarity=0.304 Sum_probs=46.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 455 L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
....+..|+++|++||.+ |..+ +|.+|||+.||+|..+|+++..++++||+....
T Consensus 5 ~~~~~~~L~~~e~~il~~-~~~g----~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 59 (74)
T 1fse_A 5 EFQSKPLLTKREREVFEL-LVQD----KTTKEIASELFISEKTVRNHISNAMQKLGVKGR 59 (74)
T ss_dssp ---CCCCCCHHHHHHHHH-HTTT----CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCCCCCCCHHHHHHHHH-HHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Confidence 445678899999999999 5555 899999999999999999999999999987544
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.99 E-value=9.8e-06 Score=67.78 Aligned_cols=50 Identities=32% Similarity=0.303 Sum_probs=43.1
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 457 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 457 ~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.....|+++|++||.+.+ .| +|.+|||+.||||..||+....++++||.-
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G----~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KG----FTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 346789999999999987 55 999999999999999999999999999964
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.92 E-value=8.6e-06 Score=62.14 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
++|++|+.+ |..| +|.+|||+.||+|..+|+.+..++++||+..-
T Consensus 1 ~re~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 1 LRERQVLKL-IDEG----YTNHGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp CHHHHHHHH-HHTS----CCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHH-HHcC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 579999999 7666 99999999999999999999999999998643
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.83 E-value=2.6e-05 Score=66.46 Aligned_cols=47 Identities=28% Similarity=0.277 Sum_probs=43.0
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
..|+++|++||.+.+ .| +|.+|||+.||||..+|+....++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~-~G----~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-EG----FLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH-HT----CCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 679999999999954 55 999999999999999999999999999965
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.36 E-value=0.00026 Score=68.53 Aligned_cols=47 Identities=26% Similarity=0.392 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
.|+++|++||.+. ..| +|.+|||++||||..||+.+..++++||.-.
T Consensus 175 ~Lt~~e~~vl~~~-~~g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 175 MLSPREMLCLVWA-SKG----KTASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp SCCHHHHHHHHHH-HTT----CCHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 5999999999995 455 9999999999999999999999999999653
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.35 E-value=0.00025 Score=68.49 Aligned_cols=46 Identities=28% Similarity=0.549 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|+++|++||.+. ..| +|.+|||++||||..||+.++.++++||.-
T Consensus 173 ~Lt~~e~~vl~~~-~~g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 173 WLDPKEATYLRWI-AVG----KTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCHHHHHHHHHH-TTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 5999999999995 455 999999999999999999999999999964
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.07 E-value=0.00064 Score=66.06 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=42.6
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
..|+++|++|+.+. ..| +|.+|||+.||||..||+....++++||.-
T Consensus 174 ~~Lt~re~~vl~~~-~~G----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 174 VRLTARETEMLKWT-AVG----KTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp CCCCHHHHHHHHHH-HTT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHH-HcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 46999999999996 455 999999999999999999999999999864
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=96.98 E-value=0.00084 Score=66.52 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|+++|++||.+.. .| +|.+|||++||||..||+..+.++++||.-
T Consensus 197 ~Lt~re~~vl~~~~-~G----~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-RG----KTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999984 55 999999999999999999999999999964
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.94 E-value=0.0013 Score=46.71 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|++.++..+...|..+ +|..+||+.||||+.+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~~~g----~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN----VSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHhh
Confidence 57888886666666554 89999999999999999987653
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.47 E-value=0.0061 Score=52.03 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
.+++.-..|-.++|..| +|..|||+.||||+.+|.+++.+|...+-
T Consensus 18 ~~~~~~~~~A~lyYv~g----~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDG----KPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHTTC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 57888888999999877 99999999999999999999999988753
No 39
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.06 E-value=0.0059 Score=45.20 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 463 ~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
++..+.|+.+ |..+ +|..|||+.||||+.+|+.++.+|
T Consensus 18 ~~~~~~i~~l-~~~g----~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 18 DDLVSVAHEL-AKMG----YTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHH-HHTT----CCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred HHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHhC
Confidence 3445566666 5544 899999999999999999887654
No 40
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=95.93 E-value=0.016 Score=53.36 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=44.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 455 L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+...+..|+++|++|+.+. ..+ +|.++||+.+|+|..||+.+..+.++||..
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l-~~g----~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLT-IRG----LMNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHH-TTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHH-HcC----CcHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 3444568999999999875 333 899999999999999999999999999964
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=95.31 E-value=0.03 Score=51.95 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=41.5
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
..|+++|++|+.+-. .+ +|.+|||+.+++|..||+.+..+.++||.-
T Consensus 153 ~~Lt~rE~~vl~~l~-~g----~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIA-QG----LPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHH-cC----CCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 469999999998753 44 899999999999999999999999999953
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.10 E-value=0.029 Score=52.81 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=41.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
..|+++|++|+.+- ..+ +|.+|||+.+++|..||+....+.++||.-
T Consensus 148 ~~LT~rE~~vL~~l-~~g----~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLL-SEG----LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHH-HCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 46999999999874 334 899999999999999999999999999853
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=94.64 E-value=0.027 Score=52.84 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
...|+++|++|+.+- ..+ +|.++||+.+++|..||+.+..+.++||.-
T Consensus 157 ~~~Lt~rE~~vL~~l-~~g----~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 157 YAKLTKREQQIIKLL-GSG----ASNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HHTSCHHHHHHHHHH-TTT----CCHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHH-HcC----CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 346999999999873 344 999999999999999999999999999843
No 44
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=94.55 E-value=0.072 Score=43.45 Aligned_cols=43 Identities=16% Similarity=0.431 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 465 rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.++.||.+-...+.|...|..|||+.||||+.+|+ +.|.+|.+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~----~~L~~Le~ 53 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN----RVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 45667665554444667999999999999999998 56666654
No 45
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.04 E-value=0.14 Score=48.52 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 452 KEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 452 ~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.......+..|+++++.|+.+.. .+ ++.++||..||+|..+|+....++++||.-
T Consensus 189 ~~~~~~~l~~L~~r~~~i~~~~~-~g----~~~~eia~~l~~s~~tv~~~l~~i~~kl~~ 243 (258)
T 3p7n_A 189 RERAAEMLKTLSPRQLEVTTLVA-SG----LRNKEVAARLGLSEKTVKMHRGLVMEKLNL 243 (258)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45567888999999999999865 34 899999999999999999999999999864
No 46
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=93.87 E-value=0.016 Score=64.14 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=13.1
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 009803 210 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDL 242 (525)
Q Consensus 210 ~~d~l~-yl~~i~~~~~lLt~eEE~~L~~~iq~~ 242 (525)
..||++ ||+++ |++||||+++|++|+++|..+
T Consensus 94 ~~dpvrmyl~em-g~~~ll~~~~e~~~ak~ie~g 126 (613)
T 3iyd_F 94 TTDPVRMYMREM-GTVELLTREGEIDIAKRIEDG 126 (613)
T ss_dssp -----------C---------CSSSTTTHHHHHH
T ss_pred CCCcHHHHHHHh-cccccCCchhHHHHHHHHHHh
Confidence 579999 99999 999999999999999999975
No 47
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.84 E-value=0.088 Score=42.34 Aligned_cols=44 Identities=16% Similarity=0.452 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+.++.||.+-.-.+.|.+.|..|||+.||||+.+|+++ |.+|.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~----L~~L~~ 57 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV----LYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 34567766555444456699999999999999999854 555543
No 48
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.73 E-value=0.085 Score=48.98 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG---VSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg---IS~erVRqie~RALkKLR~ 511 (525)
.|+++|++||.+-. .+.|..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 145 ~Lt~rE~~vl~~l~-~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLA-ENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 59999999997654 44567799999999999 9999999999999999964
No 49
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.31 E-value=0.099 Score=48.77 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|.+||.+-. .+.|+.+|.+|||+.+ ++|..||+.+..+.++||..
T Consensus 156 ~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLM-RNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-hCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 59999999998754 4456779999999999 99999999999999999963
No 50
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.27 E-value=0.12 Score=48.70 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|.+||.+-. .+-|..+|.+|||+.+ ++|..||+....+.++||..
T Consensus 153 ~LT~rE~~vL~~l~-~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALA-RKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHH-HCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 59999999998754 4556779999999999 99999999999999999963
No 51
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=92.91 E-value=0.1 Score=36.99 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCHHH-HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 462 LNPRE-RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 462 L~~rE-R~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+++.+ +.|+.+ +..+ +|..+||+.||||+.+|..++.+
T Consensus 6 ~~~~~~~~i~~l-~~~g----~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRL-LEKG----HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHH-HHTT----CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHH-HHcC----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 34333 345554 4433 89999999999999999977543
No 52
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.43 E-value=0.14 Score=47.43 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg-----IS~erVRqie~RALkKLR~ 511 (525)
.|+++|.+|+.+-. .+-|..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~-~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLV-MNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH-hCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 59999999998654 44566799999999998 9999999999999999964
No 53
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=92.31 E-value=0.21 Score=38.84 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++..+.||.+-- .++.++|..|||+.+|+|+.+|. +.++.|++
T Consensus 8 m~~~~~~IL~~L~--~~~~~~s~~eLA~~lglsr~tv~----~~l~~L~~ 51 (67)
T 2heo_A 8 GDNLEQKILQVLS--DDGGPVAIFQLVKKCQVPKKTLN----QVLYRLKK 51 (67)
T ss_dssp -CHHHHHHHHHHH--HHCSCEEHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred ccHHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3444556666542 23456999999999999999998 55666664
No 54
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.22 E-value=0.13 Score=48.02 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg-----IS~erVRqie~RALkKLR~ 511 (525)
.|+++|.+||.+-. .+.|..+|.++||+.++ +|..||+.+..+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~-~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLA-EHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHH-hCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 59999999998754 45567799999999998 9999999999999999975
No 55
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.87 E-value=0.03 Score=54.86 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Q 009803 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG--VSRERIRQIESSAFRKLK 510 (525)
Q Consensus 455 L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg--IS~erVRqie~RALkKLR 510 (525)
+...+..|++.++. |...||.+ .|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i~~l~~~~~~-L~~~~~~~----ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETINKLSRTARQ-LQQELGRE----PSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhCCC----CCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 45566778777777 45566655 89999999999 999999999999988763
No 56
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=91.04 E-value=0.22 Score=46.59 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHH--HhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWR--FGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lR--ygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|+++|++|+..- |....|.|.|..|||+.||+|..+|+.++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999765 33345667999999999999999887443
No 57
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=90.92 E-value=0.3 Score=42.21 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|++.++..|...+..| +|..+||+.||||+.+|+.+..+
T Consensus 6 ~~s~~~r~~i~~~~~~G----~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKLLN----VSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHc
Confidence 47777777666666544 89999999999999999988764
No 58
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=90.84 E-value=0.61 Score=40.28 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 457 KVLDTLNPRERQVVRWRFGLEDGRM-KTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 457 ~aL~~L~~rER~VL~lRygl~~g~~-~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
...-.|++.+..|+..-... +.| +|..|||+.+|+|+.+|. |.+++|.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~~--~~~~~t~~eLa~~l~~s~sTV~----r~L~~L~~ 68 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLNE--PDRWIDTDALSKSLKLDVSTVQ----RSVKKLHE 68 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHHS--TTCCEEHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHC--CCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34557999999988776543 345 899999999999999999 66666654
No 59
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.67 E-value=0.55 Score=38.29 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=35.0
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
...|++.+..+|...+..++ +.|..|||+.+|+|+.+|+ +.+++|.
T Consensus 16 ~~~l~~~~~~~l~~l~~~~~--~~t~~ela~~l~is~~tv~----~~l~~L~ 61 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEIEK--PITSEELADIFKLSKTTVE----NSLKKLI 61 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHCS--CEEHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHcCC--CCCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 45789988888766553232 4999999999999999999 5555554
No 60
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.59 E-value=0.45 Score=40.01 Aligned_cols=41 Identities=15% Similarity=-0.052 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
.+++.++.-+...|..+ +|..+||+.||||+.+|+.+..+-
T Consensus 17 ~~s~~~r~~i~~~~~~g----~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG----IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45655555444445443 899999999999999999888764
No 61
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=90.53 E-value=0.11 Score=48.33 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg-----IS~erVRqie~RALkKLR~ 511 (525)
.|+++|++||.+-. .+.|..+|.+|||+.++ +|..+|+....+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHH-HTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH-hCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 59999999998754 34466799999999999 9999999999999999974
No 62
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.45 E-value=0.41 Score=45.45 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|.+||.+-. .+.|+.+|.++|++.+ +++..+|+.+..+.++||..
T Consensus 176 ~LT~rE~~iL~~l~-~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 59999999998765 3457789999999999 78999999999999999964
No 63
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.26 E-value=0.22 Score=47.72 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHH-----HHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGE-----LMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe-----~LgIS~erVRqie~RALkKLR~ 511 (525)
.|+++|++||.+-. .+.|..+|.+|||+ .++++..||+....+.++||..
T Consensus 182 ~LT~rE~evL~ll~-~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 182 RLSPKEFDILALLI-RQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 59999999999865 44567799999999 5888899999999999999864
No 64
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=89.54 E-value=0.46 Score=44.90 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 468 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 468 ~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
.+..+ |..| +|..|||+.||||+.+|.+++..|.
T Consensus 16 ria~~-y~~g----~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 16 RLMRM-KNDG----MSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHH-HHTT----CCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHH-HHcC----CCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 44455 6555 9999999999999999999887764
No 65
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.71 E-value=0.7 Score=40.67 Aligned_cols=42 Identities=17% Similarity=0.046 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
.++..+|.-|...+..+ +|..+||+.||||+.+|+.+..+-.
T Consensus 32 ~~s~e~r~~iv~~~~~G----~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQG----VRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555555554445433 8999999999999999998887643
No 66
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=88.47 E-value=0.86 Score=40.30 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=33.6
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+..|++.++.||.+-.. + .+.|..|||+.+|+|+.+|+. .+++|.+
T Consensus 4 m~~ld~~d~~il~~L~~-~--~~~s~~ela~~lg~s~~tv~~----~l~~L~~ 49 (151)
T 2dbb_A 4 MRKLDRVDMQLVKILSE-N--SRLTYRELADILNTTRQRIAR----RIDKLKK 49 (151)
T ss_dssp --CCCHHHHHHHHHHHH-C--TTCCHHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred hhhCCHHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34589999998875432 2 249999999999999999984 4555543
No 67
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.05 E-value=1.1 Score=36.32 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
.|..+||+.||||+.+|+++..+.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 899999999999999999887544
No 68
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=87.62 E-value=0.95 Score=39.85 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.++.||.+-... .+.|+.|||+.+|+|+.+|+.++
T Consensus 2 ~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 2 KLDQIDLNIIEELKKD---SRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp CCCHHHHHHHHHHHHC---SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHH
Confidence 3788888888765432 24999999999999999998443
No 69
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=87.52 E-value=0.42 Score=39.11 Aligned_cols=23 Identities=4% Similarity=0.166 Sum_probs=20.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|..|||+.||||+.+|++++.+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999976543
No 70
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.22 E-value=1.1 Score=39.00 Aligned_cols=43 Identities=16% Similarity=0.382 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|++.++.||..-. .+ + +.|+.|||+.+|+|+.+|+ +.+++|.+
T Consensus 2 ld~~~~~il~~L~-~~-~-~~~~~ela~~lg~s~~tv~----~~l~~L~~ 44 (141)
T 1i1g_A 2 IDERDKIILEILE-KD-A-RTPFTEIAKKLGISETAVR----KRVKALEE 44 (141)
T ss_dssp CCSHHHHHHHHHH-HC-T-TCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCHHHHHHHHHHH-Hc-C-CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 6778888887543 22 2 4899999999999999998 45555543
No 71
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=87.08 E-value=0.9 Score=41.00 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
|++.++.||.+- ..+ .+.|+.|||+.+|+|+.+|+.++
T Consensus 1 lD~~d~~il~~L--~~~-~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 1 MDRLDRKILRIL--QED-STLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp CCHHHHHHHHHH--TTC-SCSCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHH--HHC-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 567778887764 223 24899999999999999999443
No 72
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.55 E-value=1.2 Score=39.48 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.++.||.+-.. ++ +.|+.|||+.+|+|+.+|++++
T Consensus 4 ~ld~~~~~iL~~L~~-~~--~~s~~ela~~lg~s~~tv~~~l 42 (150)
T 2w25_A 4 ALDDIDRILVRELAA-DG--RATLSELATRAGLSVSAVQSRV 42 (150)
T ss_dssp CCCHHHHHHHHHHHH-CT--TCCHHHHHHHHTSCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH-cC--CCCHHHHHHHHCcCHHHHHHHH
Confidence 588889888886532 22 4999999999999999998543
No 73
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=86.52 E-value=0.97 Score=37.76 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+.+....||...+- .|.++|..|||+.+|||+.+|+ +++++|..
T Consensus 15 ~~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~----~~L~~L~~ 59 (110)
T 1q1h_A 15 LLGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVR----KKLNLLEE 59 (110)
T ss_dssp TSCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred HcChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 455666677766543 2334899999999999999999 67777765
No 74
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.43 E-value=1.1 Score=36.57 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
.++.++.-+...|..++| .|+.+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~~~~g--~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDG--ASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHTTGGG--SCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC--ChHHHHHHHHCcCHHHHHHHHHHH
Confidence 555555433333322102 899999999999999999887653
No 75
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=86.34 E-value=0.7 Score=40.36 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 500 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRq 500 (525)
..|+.| .+|+.+-. .+ +|+.|||+.+|+|..||..
T Consensus 60 ~aLs~R-~eV~klL~-~G----~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-QG----YTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHHH-HHHHHHHH-HT----CCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHH-HHHHHHHH-cC----CCHHHHHHHHCCCHHHHHH
Confidence 345555 56666632 33 9999999999999999984
No 76
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.29 E-value=1.5 Score=38.73 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.++.||.+-.. +| +.|+.|||+.+|+|+.+|++++
T Consensus 4 ~ld~~~~~il~~L~~--~~-~~s~~ela~~lg~s~~tv~~~l 42 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--DG-KAPLREISKITGLAESTIHERI 42 (151)
T ss_dssp CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHCSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHHHHH
Confidence 478888888875433 22 4999999999999999998543
No 77
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=86.17 E-value=1.2 Score=39.98 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.++.||.+-.. ++ +.|+.|||+.+|+|+.+|+.++
T Consensus 7 ~ld~~~~~il~~L~~--~~-~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE--NG-RLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHHHHH
Confidence 488888888876543 22 3899999999999999999554
No 78
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=86.00 E-value=2.5 Score=36.13 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 453 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 453 ~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
..+...+. .|++.+..|+.+-+..+ .++|..|||+.+|+|+.+|..+.
T Consensus 13 ~~~~~~~~~~gl~~~~~~il~~L~~~~--~~~t~~ela~~l~~~~stvs~~l 62 (152)
T 1ku9_A 13 ELFSELAKIHGLNKSVGAVYAILYLSD--KPLTISDIMEELKISKGNVSMSL 62 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCS--SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcC--CCCCHHHHHHHHCcCHHHHHHHH
Confidence 33444443 58999998887775333 24999999999999999998443
No 79
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.88 E-value=1.7 Score=38.50 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.++.||.+-... .+.|+.|||+.+|+|+.+|++++
T Consensus 5 ~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 5 LIDNLDRGILEALMGN---ARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp CCCHHHHHHHHHHHHC---TTSCHHHHHHHHTSCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHH
Confidence 4788888888764322 24899999999999999999543
No 80
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.54 E-value=3.8 Score=34.76 Aligned_cols=55 Identities=4% Similarity=0.139 Sum_probs=40.1
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
+...+...+. .|++.+..||..-+..+ +.+.|..+||+.+|+++.+|.. ++++|-
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~-~~~~~~~ela~~l~~~~~tvs~----~l~~Le 75 (141)
T 3bro_A 19 MSTRFDIFAKKYDLTGTQMTIIDYLSRNK-NKEVLQRDLESEFSIKSSTATV----LLQRME 75 (141)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTT-TSCCBHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCcchHHH----HHHHHH
Confidence 3344555553 58999998888776543 3359999999999999999985 455554
No 81
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.53 E-value=1.3 Score=35.69 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 455 LEKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 455 L~~aL~~L~-~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
+..++..|. +.+..||.+- . .+.+.|..|||+.+|+|+.+|++ .+++|.
T Consensus 14 ~~~~~~~l~~~~~~~il~~l--~-~~~~~s~~ela~~l~is~~tvs~----~l~~L~ 63 (99)
T 3cuo_A 14 AAALLKAMSHPKRLLILCML--S-GSPGTSAGELTRITGLSASATSQ----HLARMR 63 (99)
T ss_dssp HHHHHHHHCSHHHHHHHHHH--T-TCCSEEHHHHHHHHCCCHHHHHH----HHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHH--H-hCCCcCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 344444444 5555666543 2 34469999999999999999994 455554
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.50 E-value=1.6 Score=32.54 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 484 LQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 484 l~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
+.+||..|||++.+|+++... ...++..+
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999764 45555544
No 83
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.48 E-value=1.5 Score=35.48 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
.|++.+..||..-...+ +.|..|||+.+|+|+.+|+ +.+++|.
T Consensus 17 ~l~~~~~~il~~l~~~~---~~s~~ela~~l~is~~tv~----~~l~~L~ 59 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERG---GMRVSEIARELDLSARFVR----DRLKVLL 59 (109)
T ss_dssp CCCHHHHHHHHHHHHHC---CBCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 47888888887654322 3999999999999999999 4455554
No 84
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.32 E-value=1.5 Score=37.82 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=33.4
Q ss_pred HhcCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWRFGL-EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl-~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
+-.|++.+..+|..-+.+ ..+.+.|..+||+.+|+|+.+|+ +++++|.
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~----~~l~~Le 56 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVF----EEVSHLE 56 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHH----HHHHHHH
Confidence 346888887777655432 23345999999999999999999 4555554
No 85
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=85.31 E-value=2 Score=36.97 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=36.3
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLDT----LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~~----L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...+.. |++.+..||..-+..+ +.|..|||+.+|+++.+|..+..+
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDEQR---GLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT---TCCHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---CcCHHHHHHHhCCCHHHHHHHHHH
Confidence 44556666654 9999999888776543 499999999999999999955443
No 86
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=85.31 E-value=5.3 Score=32.32 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=31.1
Q ss_pred HHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 457 KVLDTL-NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 457 ~aL~~L-~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
..+..| ++....||.+- ++ ++|..|||+.+|+|+.+|++ .++.|.+
T Consensus 23 ~~~~~l~~~~r~~Il~~L---~~--~~~~~eLa~~l~is~~tv~~----~L~~L~~ 69 (96)
T 1y0u_A 23 RYNYAVTNPVRRKILRML---DK--GRSEEEIMQTLSLSKKQLDY----HLKVLEA 69 (96)
T ss_dssp HHHHHHSCHHHHHHHHHH---HT--TCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH---cC--CCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 344433 45555666654 22 39999999999999999994 4555543
No 87
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=85.07 E-value=0.85 Score=45.71 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 009803 468 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507 (525)
Q Consensus 468 ~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALk 507 (525)
.|..++|..+ +|..|||+.||||+.|||..+..+.+
T Consensus 12 ~ia~l~~~~~----~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYYEQD----MTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHTSC----CCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666666544 99999999999999999976665533
No 88
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=85.04 E-value=2.3 Score=36.23 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 453 EDLEKVLDTLNPRERQVVRWRFGLED-GRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 453 ~~L~~aL~~L~~rER~VL~lRygl~~-g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
..|...+..|++.|+.|..+-...-+ -..+|..|||+..|||..+|-..-
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~ 60 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLC 60 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHH
Confidence 45677788999999998775542200 012899999999999999998544
No 89
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=84.98 E-value=1.9 Score=34.06 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+.|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 14 ~~s~~eLa~~lgvs~~tv~----r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQAR----YYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4899999999999999998 55566654
No 90
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.94 E-value=2.8 Score=35.80 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=36.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
...+...+. .|++.+..||..-+..+ .+.|..+||+.+|+|+.+|..+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~--~~~t~~~la~~l~~s~~~vs~~l~ 74 (146)
T 2fbh_A 23 RAELDRRLSHLGLSQARWLVLLHLARHR--DSPTQRELAQSVGVEGPTLARLLD 74 (146)
T ss_dssp HHHHHHHTGGGCCTTTHHHHHHHHHHCS--SCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHcC--CCCCHHHHHHHhCCChhhHHHHHH
Confidence 344555554 48899988887763333 349999999999999999995443
No 91
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=84.71 E-value=1.2 Score=47.69 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=55.4
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHH
Q 009803 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 465 (525)
Q Consensus 386 gr~Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~~r 465 (525)
+..-|..+||+.+|+|...|+.-+...+....-.-.+...+. +-.+..+......+ + ...+++.
T Consensus 30 ~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~---Gy~L~~~~~~~~~~----------~---~~~~~~~ 93 (485)
T 3sqn_A 30 VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSS---GIRLRNQGNAQTNE----------L---WSLFLPQ 93 (485)
T ss_dssp CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETT---EEEEEEC---CTHH----------H---HHHHGGG
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCC---EEEEecCcHHHHHH----------H---HHhcCHH
Confidence 344688999999999999998876432222110001110000 00111110001100 1 1123344
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 009803 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509 (525)
Q Consensus 466 ER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKL 509 (525)
+|....+.+.+.+ ++.|+.++|+.|.||++||.+-+.+..+.|
T Consensus 94 eR~~~Il~~LL~~-~~isi~~Lae~l~VS~sTi~~DLk~i~~~L 136 (485)
T 3sqn_A 94 SISIQLLKELLFT-KELVTTSFLSTSGVSYETLKRHIKKMNQAL 136 (485)
T ss_dssp SHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4443333333322 369999999999999999996554444444
No 92
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=84.54 E-value=1.6 Score=39.99 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.++.||.+-.. ++ ..|+.|||+.+|+|+.+|++++
T Consensus 24 ~ld~~d~~IL~~L~~--~~-~~s~~eLA~~lglS~~tv~~rl 62 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DG-KAPLREISKITGLAESTIHERI 62 (171)
T ss_dssp CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHHHHH
Confidence 588999998876543 22 4999999999999999999543
No 93
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=84.34 E-value=1.1 Score=36.56 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGL-EDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl-~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|+.++..||...+.. ++|.+.|..+||+.+|+++.+|.+++.
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 52 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIK 52 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4788888887766543 344558999999999999999995543
No 94
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=84.33 E-value=1.5 Score=38.62 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|++.++.||.+- ..+ .+.|..|||+.+|+|+.+|+.+ +++|.+
T Consensus 1 ld~~~~~il~~L--~~~-~~~~~~ela~~lg~s~~tv~~~----l~~L~~ 43 (150)
T 2pn6_A 1 MDEIDLRILKIL--QYN-AKYSLDEIAREIRIPKATLSYR----IKKLEK 43 (150)
T ss_dssp CCHHHHHHHHHH--TTC-TTSCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred CChHHHHHHHHH--HHc-CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 566777777653 222 2599999999999999999944 455543
No 95
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=84.22 E-value=3.1 Score=38.02 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 451 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 451 ~~~~L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+...+...+..|++.+..||..-+... +.+.|..+||+.+|+++.+|..++.
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~ 79 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVA 79 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 344555666679999999988776421 2249999999999999999995443
No 96
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=83.81 E-value=4.1 Score=34.57 Aligned_cols=53 Identities=9% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...+. .|++.+..||..-+..+ +.+.|..|||+.+|+|+.+|..+..+
T Consensus 16 ~~~~~~~~~~~~~lt~~~~~vL~~l~~~~-~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 16 MKQKADQKLEQFDITNEQGHTLGYLYAHQ-QDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHHST-TTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 4445555554 48999999988776543 23599999999999999999954433
No 97
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=83.36 E-value=4.1 Score=34.39 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=36.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
...+...+. .|++.+..||..-+.. .+.|..|||+.+|+|+.+|..+.
T Consensus 15 ~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~~~~ela~~l~~s~~tvs~~l 64 (138)
T 3bpv_A 15 RVFIGRELGHLNLTDAQVACLLRIHRE---PGIKQDELATFFHVDKGTIARTL 64 (138)
T ss_dssp HHHHHHHSGGGTCCHHHHHHHHHHHHS---TTCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHHHHH
Confidence 344555554 5899998888776653 24899999999999999999543
No 98
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=83.32 E-value=0.77 Score=40.99 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.++..+|.-|...|-.+ +|..+||+.||||+.+|+.++.+
T Consensus 25 ~~s~e~r~~ii~l~~~G----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHT----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 35555555444444444 89999999999999999988764
No 99
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=83.28 E-value=4 Score=35.31 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 450 FMKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 450 ~~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.+...+...+. .|++.+-.||..-+..+ .++|..|||+.+|+++.+|..++.
T Consensus 23 ~~~~~~~~~l~~~glt~~q~~vL~~l~~~~--~~~t~~eLa~~l~i~~~tvs~~l~ 76 (150)
T 3fm5_A 23 MVLGAVNKALVPTGLRVRSYSVLVLACEQA--EGVNQRGVAATMGLDPSQIVGLVD 76 (150)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHST--TCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCC--CCcCHHHHHHHHCCCHhHHHHHHH
Confidence 34445555554 58999988887655433 348999999999999999995543
No 100
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=83.17 E-value=4.3 Score=34.39 Aligned_cols=39 Identities=5% Similarity=0.008 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.+..||..-+..+ +.|..+||+.+|+|+.+|..++
T Consensus 28 ~l~~~~~~iL~~l~~~~---~~~~~ela~~l~is~~~vs~~l 66 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDA---PLHQLALQERLQIDRAAVTRHL 66 (142)
T ss_dssp SSCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHH
Confidence 69999988887765433 3999999999999999999544
No 101
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=83.14 E-value=1.9 Score=39.31 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
..|++.++.||.+-.. ++ +.|+.|||+.+|+|+.+|+.++
T Consensus 13 ~~ld~~d~~IL~~L~~--~~-~~s~~eLA~~lglS~~tv~~~l 52 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--DA-RLTISELSEQLKKPESTIHFRI 52 (171)
T ss_dssp -CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHHHHH
Confidence 4588888888876533 22 4899999999999999999543
No 102
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=82.99 E-value=4 Score=34.87 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 454 DLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 454 ~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.+...+. .|++.+..||..-+ + .+.|..|||+.+|+|+.+|..++
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~--~--~~~~~~ela~~l~~s~~tvs~~l 71 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS--D--GPKTMAYLANRYFVTQSAITASV 71 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--T--SCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh--c--CCcCHHHHHHHhCCCchhHHHHH
Confidence 3444453 58999988887765 2 24999999999999999999544
No 103
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=82.80 E-value=5.2 Score=36.11 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHHhcC-CC---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLE-DG---------RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~-~g---------~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
...+..+|-.-.+..... .+ -++|.++||..+|+|+++|. |++++|++
T Consensus 136 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 136 AFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp HHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 456777775443332211 11 26899999999999999999 77888876
No 104
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=82.76 E-value=3.2 Score=35.14 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=35.6
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 453 EDLEKVLD-TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 453 ~~L~~aL~-~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
..+...+. .|++.+..||..-+..+ +.|..+||+.+|+++.+|..++
T Consensus 26 ~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l 73 (140)
T 2nnn_A 26 ALFANGIGNGLTPTQWAALVRLGETG---PCPQNQLGRLTAMDAATIKGVV 73 (140)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHHHS---SBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHHHHH
Confidence 34444443 69999988887765433 4999999999999999999544
No 105
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=82.70 E-value=4.7 Score=34.91 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=36.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 453 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 453 ~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
..+...+. .|++.|-.||..-+..+ +.|..|||+.+|+++.+|.++..+
T Consensus 28 ~~~~~~~~~~~lt~~q~~iL~~l~~~~---~~~~~eLa~~l~~~~~~vs~~l~~ 78 (149)
T 4hbl_A 28 QFYEKKLKQFGITYSQYLVMLTLWEEN---PQTLNSIGRHLDLSSNTLTPMLKR 78 (149)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHSS---SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444443 58999988888776543 489999999999999999955443
No 106
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=82.49 E-value=3.3 Score=34.29 Aligned_cols=50 Identities=10% Similarity=0.236 Sum_probs=34.0
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 454 DLEKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 454 ~L~~aL~~L~-~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+..++..|. +....||.+-. ++ ++|..|||+.+|+|+.+|++ .+++|++
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~--~~--~~~~~ela~~l~is~stvs~----~L~~L~~ 65 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS--VS--EASVGHISHQLNLSQSNVSH----QLKLLKS 65 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH--HC--CBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH--hC--CCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4555566666 44455665543 22 38999999999999999994 4555553
No 107
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=82.25 E-value=4.8 Score=34.57 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=37.3
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
...+...+. .|++.+..||..-+..+ +.|..+||+.+|+++.+|.+++.+
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLEEG---DLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCchhHHHHHHH
Confidence 334555554 58999988887766533 499999999999999999955443
No 108
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.25 E-value=5.5 Score=34.76 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=37.5
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 452 KEDLEKVL---DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 452 ~~~L~~aL---~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
...+...+ -.|++.+..||..-+..+ +.|..|||+.+|+++.+|..++.+
T Consensus 34 ~~~~~~~l~~~~~lt~~~~~iL~~l~~~~---~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 34 SGNIAKVYGDRYGMAIPEWRVITILALYP---GSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHST---TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34445544 369999999888776532 499999999999999999955443
No 109
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.86 E-value=3 Score=32.83 Aligned_cols=46 Identities=2% Similarity=0.087 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.++++...||.+-... ++.+.|..||++.+ +||..||+ |.|+.|.+
T Consensus 14 ~~t~~r~~IL~~l~~~-~~~~~s~~el~~~l~~~~~~is~~TVy----R~L~~L~~ 64 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEP-DNHHVSAEDLYKRLIDMGEEIGLATVY----RVLNQFDD 64 (83)
T ss_dssp CCCHHHHHHHHHHTSG-GGSSBCHHHHHHHHHHTTCCCCHHHHH----HHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhCCCCCHhhHH----HHHHHHHH
Confidence 4788777777654322 11469999999999 99999999 66666654
No 110
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=81.81 E-value=3.5 Score=35.27 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=37.3
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
...+...+. .|++.+..||..-+..+ +.|..|||+.+|+++.+|.+++.+
T Consensus 23 ~~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 23 HLFLMRSIASYDVTPEQWSVLEGIEANE---PISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHTTTSSSCHHHHHHHHHHHHHS---SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHcC---CcCHHHHHHHHCCCHhhHHHHHHH
Confidence 344555553 48999999888766543 399999999999999999954443
No 111
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=81.79 E-value=1.1 Score=35.96 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 479 GRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 479 g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
|.|.|..|||+.||||..+||..+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHH
Confidence 346899999999999999999443
No 112
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.63 E-value=1.7 Score=36.16 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|...|+.+..-.+ .|+.+||+.+|||..||+..+..
T Consensus 7 ~R~~~I~~~l~~~~----~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 7 ERTIKIGKYIVETK----KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHHC----CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHCCCHHHHHHHHcC
Confidence 35555655544333 89999999999999999987764
No 113
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=81.60 E-value=4.6 Score=34.22 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 452 KEDLEKVLDTLNPRERQVVRWRFGLE-DGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 452 ~~~L~~aL~~L~~rER~VL~lRygl~-~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
...|...+..|++.|+.|...-.-.. .-..+|..|||+..|+|..+|-..-
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~ 56 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLS 56 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHH
Confidence 35677888999999999976543221 0134999999999999999987443
No 114
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=81.50 E-value=4.9 Score=34.75 Aligned_cols=48 Identities=2% Similarity=-0.003 Sum_probs=36.1
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 454 DLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 454 ~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.+...+. .|++.+..||..-+..+ +.|..+||+.+|+++.+|.++..+
T Consensus 29 ~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 29 YADQNAASLGLTIQQLAMINVIYSTP---GISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHST---TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444443 59999998888766533 399999999999999999955433
No 115
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=81.23 E-value=5.8 Score=33.52 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=38.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...+. .|++.+..||..-+..+ +.|..+||+.+|+++.+|.++..+
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 19 KDRLLNEYLSPLDITAAQFKVLCSIRCAA---CITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHHHS---SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhcC---CCCHHHHHHHHCCChHHHHHHHHH
Confidence 4455666664 58999998887766433 389999999999999999955443
No 116
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=81.07 E-value=2.6 Score=33.83 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 479 GRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 479 g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
|+..|..+||..||+|+..|.+.+.
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY 51 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLY 51 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHH
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHH
Confidence 3348999999999999988874443
No 117
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=81.03 E-value=2.5 Score=36.25 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|++.+..||..-+ .++ .|..|||+.+|+|+.+|++++.
T Consensus 35 ~lt~~~~~iL~~l~--~~~--~t~~eLa~~l~~s~~tvs~~l~ 73 (146)
T 3tgn_A 35 ALTNTQEHILMLLS--EES--LTNSELARRLNVSQAAVTKAIK 73 (146)
T ss_dssp CCCHHHHHHHHHHT--TCC--CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--hCC--CCHHHHHHHHCCCHHHHHHHHH
Confidence 46777777776543 233 9999999999999999995443
No 118
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=80.70 E-value=4.5 Score=35.98 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=36.5
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 453 EDLEKVLD----TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 453 ~~L~~aL~----~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..+...+. .|++.+..||..-+..+ +.|..|||+.+|+++.+|.+++.
T Consensus 30 ~~~~~~l~~~~~~lt~~~~~iL~~L~~~~---~~t~~eLa~~l~is~~tvs~~l~ 81 (168)
T 2nyx_A 30 AISAHSIAQVDENITIPQFRTLVILSNHG---PINLATLATLLGVQPSATGRMVD 81 (168)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHC---SEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHHHHHHHHH
Confidence 34444554 69999999887765433 39999999999999999995443
No 119
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=80.68 E-value=2.5 Score=36.92 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=37.1
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 453 EDLEKVLD---TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 453 ~~L~~aL~---~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
..+...+. .|++.+..||..-+..++ +.|..+||+.+|+++.+|.++..+
T Consensus 33 ~~~~~~l~~~~~l~~~~~~iL~~L~~~~~--~~~~~ela~~l~i~~~tvs~~l~~ 85 (160)
T 3boq_A 33 GDLNRQLLDETGLSLAKFDAMAQLARNPD--GLSMGKLSGALKVTNGNVSGLVNR 85 (160)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHCTT--CEEHHHHHHHCSSCCSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcCC--CCCHHHHHHHHCCChhhHHHHHHH
Confidence 34444443 599999998887754333 499999999999999999855443
No 120
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=80.68 E-value=5.2 Score=34.41 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 453 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 453 ~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
..+...+. .|++.+..||..-+..+ +.|..+||+.+|+++.+|..++
T Consensus 27 ~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~~vs~~l 75 (152)
T 3bj6_A 27 AAVERGTLREGVTVGQRAILEGLSLTP---GATAPQLGAALQMKRQYISRIL 75 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHST---TEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHH
Confidence 33444443 58999988887766433 4999999999999999999544
No 121
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=80.64 E-value=3.8 Score=35.94 Aligned_cols=51 Identities=2% Similarity=0.048 Sum_probs=38.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...+. .|++.+..||..-+..+ +.|..|||+.+|+++.+|..+..+
T Consensus 35 ~~~~~~~~l~~~~lt~~q~~vL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 35 GQIYIGKKIEPYGIGSGQFPFLMRLYRED---GINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHGGGTCCTTTHHHHHHHHHSC---SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555664 49999988888766543 389999999999999999955443
No 122
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.49 E-value=4.2 Score=35.20 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 453 EDLEKVL--DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 453 ~~L~~aL--~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..+...+ ..|++.+..||..-+..+ +.|..+||+.+|+|+.+|..++.
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~s~~tvs~~l~ 73 (155)
T 1s3j_A 24 PEMLESMEKQGVTPAQLFVLASLKKHG---SLKVSEIAERMEVKPSAVTLMAD 73 (155)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHS---EEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 3444444 369999998887765432 48999999999999999995443
No 123
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=80.40 E-value=3 Score=33.83 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 454 DLEKVLDTLNPR-ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 454 ~L~~aL~~L~~r-ER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+..++..|... ...||.+ ..+ .++|..|||+.+|+|+.+|+ +.+++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~--L~~--~~~~~~ela~~l~is~~tvs----~~L~~L~~ 62 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCM--LHN--QELSVGELCAKLQLSQSALS----QHLAWLRR 62 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHH--TTT--SCEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH--Hhc--CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345555555544 4445443 223 35999999999999999998 45555654
No 124
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=80.19 E-value=1.4 Score=34.09 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|+.|||+.+|||+.+|+.+++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 48999999999999999988874
No 125
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.02 E-value=3.8 Score=35.90 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|++.+..||..-+..+ +.|..+||+.+|+++.+|..++.
T Consensus 49 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~is~~tvs~~l~ 88 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKD---GLPIGTLGIFAVVEQSTLSRALD 88 (162)
T ss_dssp TCCHHHHHHHHHHHHSC---SEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCChhHHHHHHH
Confidence 49999999888766432 48999999999999999995443
No 126
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=79.72 E-value=6 Score=33.86 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
...+...+. .|++.+-.||..-+..+ +.|..+||+.+|+++.+|..++.
T Consensus 17 ~~~~~~~~~~~~lt~~q~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~ 67 (145)
T 3g3z_A 17 CNVFDKWIGQQDLNYNLFAVLYTLATEG---SRTQKHIGEKWSLPKQTVSGVCK 67 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 344455553 58999988888766543 39999999999999999995443
No 127
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=79.71 E-value=6.2 Score=36.36 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=35.3
Q ss_pred HhcCCHHHHHHHHH-----HHhc-CC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 459 LDTLNPRERQVVRW-----RFGL-ED----GRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 459 L~~L~~rER~VL~l-----Rygl-~~----g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+...+..+|-.-.+ +||. ++ .-++|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 45677887765444 4543 01 136899999999999999998 77777875
No 128
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=79.69 E-value=7.8 Score=34.81 Aligned_cols=27 Identities=37% Similarity=0.578 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999999 77777775
No 129
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=79.68 E-value=5.4 Score=34.57 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|+++.+|..++.
T Consensus 29 ~~~~~~~l~~~~lt~~~~~iL~~l~~~---~~~t~~ela~~l~i~~~tvs~~l~ 79 (155)
T 3cdh_A 29 SAQFHDHIRAQGLRVPEWRVLACLVDN---DAMMITRLAKLSLMEQSRMTRIVD 79 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSSC---SCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC---CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 344555553 5899998888765432 249999999999999999995443
No 130
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=79.47 E-value=3.5 Score=35.46 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|++.+..||..-+..+ +.|..|||+.+|+++.+|.+++.+
T Consensus 37 ~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l~~ 77 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTVKK 77 (148)
T ss_dssp TCCHHHHHHHHHHHHSS---SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC---CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 58888888887765433 499999999999999999955443
No 131
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=79.28 E-value=4.7 Score=34.40 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=36.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+...+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+.+|..++.
T Consensus 14 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~~la~~l~~s~~~vs~~l~ 65 (144)
T 1lj9_A 14 LDSISNIEFKELSLTRGQYLYLVRVCENP---GIIQEKIAELIKVDRTTAARAIK 65 (144)
T ss_dssp HHHHHHHHTGGGTCTTTHHHHHHHHHHST---TEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCc---CcCHHHHHHHHCCCHhHHHHHHH
Confidence 3344555553 58999988887765432 48999999999999999995443
No 132
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=79.27 E-value=3.7 Score=35.19 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=37.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...+. .|++.|-.||..-+. ..+.|..|||+.+|+++.+|..+..+
T Consensus 21 ~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 73 (140)
T 3hsr_A 21 IIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKK 73 (140)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3444555554 589998888766543 23599999999999999999954443
No 133
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=79.26 E-value=16 Score=30.83 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=47.1
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhCCCCCCCcccccccccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHH-
Q 009803 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRER- 467 (525)
Q Consensus 389 Pt~eEIA~~lgis~~~v~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~~rER- 467 (525)
-+..+||+.+|++...|..++......-. ... -.-+. .|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~----------~~~---~gr~~----------------------~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGT----------SKR---APRRK----------------------ALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTC----------CCC---CCCCC----------------------SSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCC----------cCC---CCCCC----------------------cCCHHHHH
Confidence 47899999999999999998864321100 000 00000 1222221
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHC--CCHHHHHHHHHH
Q 009803 468 QVVRWRFGLEDGRMKTLQEIGELMG--VSRERIRQIESS 504 (525)
Q Consensus 468 ~VL~lRygl~~g~~~Tl~EIAe~Lg--IS~erVRqie~R 504 (525)
.|+.+ . .+. ..|..+|+..|| +|.++|+.++.+
T Consensus 68 ~i~~~-~-~~~--~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 68 NVIRA-A-SNS--CKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHH-H-HHC--CCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHH-H-hCC--CCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 23333 1 111 279999999999 899999988865
No 134
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=79.24 E-value=3.3 Score=33.91 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHH-HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 454 DLEKVLDTLNPRER-QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 454 ~L~~aL~~L~~rER-~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+..++..|...-| .||.+- .++ ++|..||++.+|+|+.+|++ .|++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L--~~~--~~~~~ela~~l~is~~tvs~----~L~~L~~ 62 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTL--VEG--EFSVGELEQQIGIGQPTLSQ----QLGVLRE 62 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHH--HTC--CBCHHHHHHHHTCCTTHHHH----HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH--HhC--CCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 35555666654444 444433 232 49999999999999999984 4555543
No 135
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=79.16 E-value=2.3 Score=35.05 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 463 ~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+|....||..-...+ ++|..|||+.+|+|+.+|++++.
T Consensus 26 ~~~Rl~IL~~l~~~~---~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 26 HPMRLKIVNELYKHK---ALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp SHHHHHHHHHHHHHS---CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---CcCHHHHHHHHCcCHHHHHHHHH
Confidence 455556773332222 38999999999999999996543
No 136
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.76 E-value=3.1 Score=34.77 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 455 LEKVLDTLNP-RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 455 L~~aL~~L~~-rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+..++..|.. ....||.+- .+ .++|..|||+.+|+|+.+|+ +.+++|++
T Consensus 15 ~~~~~~al~~~~r~~IL~~L--~~--~~~s~~eLa~~lgis~stvs----~~L~~L~~ 64 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLL--AQ--GERAVEAIATATGMNLTTAS----ANLQALKS 64 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHH--TT--CCEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH--Hc--CCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4444444443 334565543 22 24899999999999999999 45555654
No 137
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=78.76 E-value=3.5 Score=30.60 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHH-----CCCHHHHHHHHH
Q 009803 480 RMKTLQEIGELM-----GVSRERIRQIES 503 (525)
Q Consensus 480 ~~~Tl~EIAe~L-----gIS~erVRqie~ 503 (525)
.+.|.+||++.| +||..||+..+.
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 369999999999 999999996655
No 138
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=78.49 E-value=5.4 Score=35.04 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=38.2
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...+. .|++.+..||..-+..+ +.|..|||+.+|+++.+|..++.+
T Consensus 31 ~~~~~~~~l~~~glt~~q~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 31 ISKYLTEHLSALEISLPQFTALSVLAAKP---NLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHCT---TCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555554 59999988888766543 499999999999999999955443
No 139
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=78.41 E-value=1.8 Score=35.06 Aligned_cols=36 Identities=8% Similarity=0.283 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHH-HHHHHHH
Q 009803 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRE-RIRQIES 503 (525)
Q Consensus 465 rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~e-rVRqie~ 503 (525)
....|+.+-.-.+ +.|..+||+.||||.. .||+.+.
T Consensus 12 ~~~~IL~~Lk~~g---~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 12 IKEKICDYLFNVS---DSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp HHHHHHHHHHHTC---CEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcCHHHHHHHcCCCcHHHHHHHHH
Confidence 3445665544433 4899999999999999 9996654
No 140
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=78.17 E-value=2.7 Score=31.38 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 17 lsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 99999999999999999998863
No 141
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=78.03 E-value=5.5 Score=34.84 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=39.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...|. .|+..|-.||.+-+... +.++|..+||+.+|+++.+|..+..+
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTFSK-SGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHTSG-GGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445666664 49999998888766432 23589999999999999999955443
No 142
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.03 E-value=3.7 Score=34.99 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|++.+..||..-+..+ +.|..+||+.+|+|+.+|..++.
T Consensus 30 ~l~~~~~~iL~~l~~~~---~~~~~~la~~l~~s~~tvs~~l~ 69 (145)
T 2a61_A 30 GITPAQFDILQKIYFEG---PKRPGELSVLLGVAKSTVTGLVK 69 (145)
T ss_dssp TCCHHHHHHHHHHHHHC---CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCchhHHHHHH
Confidence 58999888887766532 39999999999999999995443
No 143
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.94 E-value=2.8 Score=31.09 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 15 lsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999998764
No 144
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=77.92 E-value=1.6 Score=36.76 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..+||+.||||+.+|| +|+++|..
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr----~al~~L~~ 69 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIV----NALRKLES 69 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3345 99999999999999999 68888875
No 145
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=77.86 E-value=4.9 Score=36.56 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHHHhcC--C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLE--D--GRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~--~--g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
...+.++|-.-.+....+ + .-++|.++||..+|+|+++|. |.+++|++
T Consensus 144 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 144 MWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 346666665433322111 1 135899999999999999998 77788876
No 146
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=77.77 E-value=2.7 Score=32.81 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 24 ltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 24 YSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999875
No 147
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=77.75 E-value=6.1 Score=35.17 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=37.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+...+...+. .|++.|-.||..-+..++ +.|..|||+.+|+++.+|..++.
T Consensus 38 ~~~~~~~~l~~~glt~~q~~vL~~L~~~~~--~~t~~eLa~~l~i~~~tvs~~l~ 90 (166)
T 3deu_A 38 WRALIDHRLKPLELTQTHWVTLHNIHQLPP--DQSQIQLAKAIGIEQPSLVRTLD 90 (166)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHSCS--SEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHcCC--CCCHHHHHHHHCCCHhhHHHHHH
Confidence 3444555553 589999888877654332 39999999999999999995443
No 148
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=77.73 E-value=8.1 Score=34.69 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=34.9
Q ss_pred HhcCCHHHHHHHHHHHhc-CCC---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 459 LDTLNPRERQVVRWRFGL-EDG---------RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl-~~g---------~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+...+..+|-.-.+.... ..| -++|.++||..+|+|+++|. |++++|++.
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 166 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRRE 166 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 456777777654333211 111 25899999999999999999 778888753
No 149
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=77.28 E-value=2.7 Score=30.85 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 15 ~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 15 ISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999863
No 150
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=77.13 E-value=2.5 Score=32.90 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..|+|+.+|||+.+|++++.-
T Consensus 28 ltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 28 ITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999999863
No 151
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=77.11 E-value=3.4 Score=34.19 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=32.4
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 455 LEKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 455 L~~aL~~L~-~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
+..++..|. +....||..- .++ +.|..|||+.+|+|+.+|++ .+++|.
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L--~~~--~~~~~ela~~l~is~~tv~~----~l~~L~ 59 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTEL--GRA--DQSASSLATRLPVSRQAIAK----HLNALQ 59 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHH--HHS--CBCHHHHHHHSSSCHHHHHH----HHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHH--HcC--CCCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 445555555 4455566543 222 39999999999999999994 455554
No 152
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=77.07 E-value=5 Score=33.63 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=33.4
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 455 LEKVLDTL-NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 455 L~~aL~~L-~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+..++..| ++.+..||.+-.. + +.|+.|||+.+|+|+.+|+++ +++|.+
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~-~---~~s~~ela~~l~is~stvsr~----l~~Le~ 71 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN-G---PLPVTDLAEAIGMEQSAVSHQ----LRVLRN 71 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH-C---CCCHHHHHHHHSSCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-C---CCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 44444433 4666677766543 2 389999999999999999954 455544
No 153
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=77.00 E-value=3.7 Score=35.63 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=36.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
...+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+.+|.+++.+
T Consensus 33 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~s~~tvs~~l~~ 84 (153)
T 2pex_A 33 HKLYRGLLKALDLTYPQYLVMLVLWETD---ERSVSEIGERLYLDSATLTPLLKR 84 (153)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHHHHHSC---SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhCC---CcCHHHHHHHhCCCcccHHHHHHH
Confidence 344444443 58888888887765432 499999999999999999955443
No 154
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=76.88 E-value=4.2 Score=36.91 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 480 ~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
-++|.++||..+|+|+++|. |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 45899999999999999998 77888876
No 155
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=76.80 E-value=2.8 Score=30.92 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 19 ~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 19 IRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999998863
No 156
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=76.72 E-value=9.5 Score=33.52 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+..+...|. .|++.+-.||..-+..++ +.+..|||+.+|+++.+|..+..
T Consensus 17 ~~~~~~~l~~~gLt~~q~~vL~~L~~~~~--~~~~~eLa~~l~~~~~tvs~~v~ 68 (151)
T 4aik_A 17 RALIDHRLKPLELTQTHWVTLYNINRLPP--EQSQIQLAKAIGIEQPSLVRTLD 68 (151)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHHSCT--TSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCC--CCcHHHHHHHHCcCHHHHHHHHH
Confidence 444555554 489988888766554332 37889999999999999995543
No 157
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=76.62 E-value=3.1 Score=38.44 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHHHhc--CCCCCC--CHHHHHHHHCCC-HHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGL--EDGRMK--TLQEIGELMGVS-RERIRQIES 503 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl--~~g~~~--Tl~EIAe~LgIS-~erVRqie~ 503 (525)
..|+++|+.++..---. ..| + |..|+|+.+|+| +.+|++++.
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g--~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTG--MPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHS--SCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhC--CCccHHHHHHHhCCCChHHHHHHHH
Confidence 35788887765432111 112 5 999999999999 999998876
No 158
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=76.49 E-value=11 Score=33.88 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=34.0
Q ss_pred HhcCCHHHHHHHHHHHhcC-C---------CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 459 LDTLNPRERQVVRWRFGLE-D---------GRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~-~---------g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+...+..+|-.-.+..... . .-++|.++||..+|+|+++|. |++++|++
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4567777776533332111 1 135899999999999999999 77777775
No 159
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=76.45 E-value=3 Score=32.93 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|+++++.
T Consensus 32 lsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 32 LTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 160
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=76.40 E-value=3.8 Score=35.14 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++.+.|..|||+.+|||+.+|+ +.+.+|++
T Consensus 23 ~~~~~s~~ela~~~~i~~~~v~----~il~~L~~ 52 (129)
T 2y75_A 23 GEGPTSLKSIAQTNNLSEHYLE----QLVSPLRN 52 (129)
T ss_dssp TSCCBCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred CCCcCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3567999999999999999999 55666665
No 161
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.36 E-value=3.2 Score=35.22 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|++.+..||..-+..+ +.|..+||+.+|+|+.+|..++.
T Consensus 33 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~~s~~~vs~~l~ 72 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQG---EMESYQLANQACILRPSMTGVLA 72 (142)
T ss_dssp TCCHHHHHHHHHHHHHC---SEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHhHHHHHHH
Confidence 58999988887766533 38999999999999999995443
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=76.24 E-value=2.8 Score=32.30 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|.+++|+.+|||+.+|++++..
T Consensus 16 lsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 16 LTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 99999999999999999999863
No 163
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=76.22 E-value=3.8 Score=31.26 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 21 ~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 21 LTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 164
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=76.18 E-value=2.1 Score=36.32 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=24.6
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 99999999999999999 78888865
No 165
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=76.17 E-value=2.2 Score=39.40 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999998 77777875
No 166
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=76.13 E-value=3.4 Score=31.11 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 27 ~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 27 LSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999998864
No 167
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=76.07 E-value=6 Score=32.76 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHhHH
Q 009803 465 RERQVVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 465 rER~VL~lRygl~~g~~~Tl~EIAe~L-gIS~erVRqie~RALkKLR~~l 513 (525)
|+-.+...|-..+ +|+.+||+.| |....||.. |.+|+.+.+
T Consensus 34 RqiamyL~r~~t~----~Sl~~IG~~fggrdHsTV~h----a~~ki~~~~ 75 (94)
T 1j1v_A 34 RQMAMALAKELTN----HSLPEIGDAFGGRDHTTVLH----ACRKIEQLR 75 (94)
T ss_dssp HHHHHHHHHHHSC----CCHHHHHHHTTSCCHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHC----cCHHHHHHHhCCCCHHHHHH----HHHHHHHHH
Confidence 4434444455455 9999999999 899999994 555555544
No 168
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=76.05 E-value=2 Score=37.45 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=24.8
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..++|+.||||+.+|| +|++.|..
T Consensus 35 G~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 88888865
No 169
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=76.00 E-value=3.4 Score=31.45 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 24 VSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 99999999999999999999863
No 170
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.88 E-value=3.8 Score=32.18 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIES 503 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg----IS~erVRqie~ 503 (525)
..|++.|..||..-+. + .+.|..||++.++ +++.+|..++.
T Consensus 5 ~~lt~~e~~vL~~L~~-~--~~~t~~ei~~~l~~~~~~s~~Tv~~~l~ 49 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK-H--SSINTNEVIKELSKTSTWSPKTIQTMLL 49 (82)
T ss_dssp CCCCHHHHHHHHHHHT-S--SSEEHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-C--CCCCHHHHHHHHhhcCCccHHHHHHHHH
Confidence 4689999998887664 2 2599999999997 79999995443
No 171
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=75.85 E-value=7.8 Score=33.96 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLED--GRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~--g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
...+...|. .|++.|-.||..-+..++ +.++|..|||+.+|+++.+|..++.+
T Consensus 19 ~~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 19 GQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 344555564 589999888877654432 34699999999999999999965544
No 172
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=75.69 E-value=2.3 Score=39.35 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |++++|++
T Consensus 175 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999999 77888876
No 173
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=75.68 E-value=2.3 Score=32.88 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|.+|+|+.+|||+.+|++++.-
T Consensus 25 ltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 25 LTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 174
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=75.68 E-value=4 Score=31.93 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 26 lsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 26 WTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 99999999999999999999874
No 175
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=75.50 E-value=5.8 Score=34.27 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 453 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 453 ~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..+...+. .|++.+..||..- .. .+.|..|||+.+|+++.+|.++..
T Consensus 25 ~~~~~~~~~~~lt~~q~~iL~~l-~~---~~~t~~eLa~~l~~~~~~vs~~l~ 73 (151)
T 3kp7_A 25 KLLKDLQTEYGISAEQSHVLNML-SI---EALTVGQITEKQGVNKAAVSRRVK 73 (151)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH-HH---SCBCHHHHHHHHCSCSSHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHH-Hc---CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 34444443 5899998888766 22 249999999999999999995443
No 176
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=75.37 E-value=7 Score=33.53 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.+++.+ |-.+|--.+ +|.+++|+.+|||+.+|++++.-
T Consensus 70 ~~~~~~--l~~~R~~~g----lsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 70 TVAPEF--IVKVRKKLS----LTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TCCHHH--HHHHHHHTT----CCHHHHHHHHCSCTTHHHHHHHT
T ss_pred CCCHHH--HHHHHHHcC----CCHHHHHHHHCCCHHHHHHHHCC
Confidence 355554 444444455 99999999999999999999874
No 177
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=75.37 E-value=9.1 Score=32.70 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHhc----CCCCCCCHHHHHHHHCCCHHHHHH
Q 009803 461 TLNPRERQVVRWRFGL----EDGRMKTLQEIGELMGVSRERIRQ 500 (525)
Q Consensus 461 ~L~~rER~VL~lRygl----~~g~~~Tl~EIAe~LgIS~erVRq 500 (525)
-+++.|+.-|.-|+-. ..| +|+.||++.+|+|..||..
T Consensus 36 L~T~~E~~alaqR~~Ia~lL~~G--~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 36 VCTINELLSLSQRFEVAKMLTDK--RTYLDISEKTGASTATISR 77 (107)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHCCCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHCccHHHHHH
Confidence 4667766655544322 223 9999999999999999973
No 178
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=75.29 E-value=10 Score=36.04 Aligned_cols=27 Identities=37% Similarity=0.599 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |.+++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999998 77888876
No 179
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=75.22 E-value=4.4 Score=37.76 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
+++.++.||.+-. + | ++|..|||+.+|+|+.+|++++
T Consensus 18 ~d~~~~~IL~~L~--~-~-~~s~~eLA~~lglS~stv~~~l 54 (192)
T 1uly_A 18 LEDTRRKILKLLR--N-K-EMTISQLSEILGKTPQTIYHHI 54 (192)
T ss_dssp HSHHHHHHHHHHT--T-C-CBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHH--c-C-CCCHHHHHHHHCcCHHHHHHHH
Confidence 5778888887653 3 2 5999999999999999999554
No 180
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=75.20 E-value=3.1 Score=35.61 Aligned_cols=45 Identities=9% Similarity=0.209 Sum_probs=29.8
Q ss_pred HHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 456 EKVLDTL-NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 456 ~~aL~~L-~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..++..| ++....||.+-.. ++ ++|..|||+.+|+|+.+|++++.
T Consensus 33 ~~~~~al~~~~rl~IL~~L~~-~~--~~s~~eLa~~l~is~stvs~~L~ 78 (122)
T 1u2w_A 33 SQILKAIADENRAKITYALCQ-DE--ELCVCDIANILGVTIANASHHLR 78 (122)
T ss_dssp HHHHHHHHSHHHHHHHHHHHH-SS--CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH-CC--CcCHHHHHHHHCcCHHHHHHHHH
Confidence 3334444 3445566665432 22 48999999999999999995543
No 181
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.88 E-value=3.9 Score=35.61 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|++.+..||..-+..+ +.|..+||+.+|+|+.+|.+++.
T Consensus 41 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~is~~tvs~~l~ 80 (154)
T 2eth_A 41 DMKTTELYAFLYVALFG---PKKMKEIAEFLSTTKSNVTNVVD 80 (154)
T ss_dssp HSBHHHHHHHHHHHHHC---CBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 48888888887765433 49999999999999999995443
No 182
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=74.78 E-value=2.5 Score=38.82 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 480 ~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
-++|.++||..+|+|+++|. |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999998 77777775
No 183
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=74.74 E-value=4 Score=34.43 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
...+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+.+|.+++.
T Consensus 19 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~~~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3bja_A 19 QKNLDKAIEQYDISYVQFGVIQVLAKSG---KVSMSKLIENMGCVPSNMTTMIQ 69 (139)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHHSC---SEEHHHHHHHCSSCCTTHHHHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHcC---CcCHHHHHHHHCCChhHHHHHHH
Confidence 344445443 58999998888765432 49999999999999999995443
No 184
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=74.44 E-value=3.4 Score=31.27 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 19 ls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 19 IRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998863
No 185
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=74.44 E-value=15 Score=33.52 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHhcC-CC---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 459 LDTLNPRERQVVRWRFGLE-DG---------RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~-~g---------~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+...+.++|-.-.+..... .| -++|.++||..+|+|+++|. |.+++|++
T Consensus 155 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 155 LAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 3456777775444332211 11 24899999999999999998 77888875
No 186
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=74.31 E-value=3.3 Score=32.92 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..|+|+.+|||+.+|+++++-
T Consensus 28 ltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 28 LTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHCC
Confidence 99999999999999999999863
No 187
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=74.09 E-value=2.7 Score=36.65 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=24.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..++|+.||||+.+|| +|++.|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4456 99999999999999999 78888865
No 188
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=74.07 E-value=2.6 Score=38.82 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |++++|++
T Consensus 177 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999999 77777775
No 189
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=73.80 E-value=7.1 Score=37.84 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 458 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 458 aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.-..|++.+..||..-... + +.|+.|||+.+|+++.+|. |.+++|.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~~-~--~~s~~eLA~~lglsksTv~----r~L~~Le~ 192 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYET-K--GTGITELAKMLDKSEKTLI----NKIAELKK 192 (244)
T ss_dssp HHSCCCHHHHHHHHHHHHH-T--CBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHc-C--CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3457999999998865432 2 3999999999999999998 55555554
No 190
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=73.78 E-value=7.3 Score=33.36 Aligned_cols=49 Identities=18% Similarity=0.383 Sum_probs=32.0
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 455 LEKVLDTL-NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 455 L~~aL~~L-~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+..++..| ++....||.+-. + .++|..|||+.+|+|+.+|+++ +++|++
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~--~--~~~s~~ela~~lgis~stvs~~----L~~Le~ 85 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLA--R--SELCVGDLAQAIGVSESAVSHQ----LRSLRN 85 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHT--T--CCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH--c--CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 33444444 344556665432 2 2489999999999999999954 555554
No 191
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=73.76 E-value=3.7 Score=34.42 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=24.9
Q ss_pred HHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 471 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 471 ~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.+|--.+ +|.+|+|+.+|||+.+|++++.
T Consensus 43 ~~R~~~g----lTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 43 QARLNRD----LTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHTT----CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcC----CCHHHHHHHcCCCHHHHHHHHC
Confidence 4555555 9999999999999999999985
No 192
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=73.71 E-value=4.1 Score=31.66 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|.+++|+.+|||+.+|++++.-
T Consensus 25 lsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 25 MTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHCC
Confidence 99999999999999999999864
No 193
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=73.64 E-value=3.6 Score=37.91 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+|.+.|+.+-. .++.+.|..|||+.||||+.+|++.+.
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 46666666533 234569999999999999999996554
No 194
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=73.58 E-value=11 Score=32.03 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|++.+-.||..-+..+ + |..+||+.+|+++.+|.+++.+
T Consensus 34 ~lt~~~~~iL~~l~~~~---~-~~~~la~~l~~~~~tvs~~l~~ 73 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEP---R-SMVYLANRYFVTQSAITAAVDK 73 (144)
T ss_dssp SCCHHHHHHHHHHHHSC---E-EHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---C-CHHHHHHHHCCChhHHHHHHHH
Confidence 68999988888766432 2 9999999999999999954443
No 195
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=73.31 E-value=4.2 Score=31.45 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 24 LSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 99999999999999999999863
No 196
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=73.27 E-value=2.7 Score=36.49 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVA----KAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4446 99999999999999999 67877764
No 197
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.26 E-value=3.6 Score=35.29 Aligned_cols=40 Identities=10% Similarity=-0.044 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
|++.+..||..-+..++ +.|..+||+.+|+|+.+|.+++.
T Consensus 33 l~~~~~~iL~~l~~~~~--~~~~~~la~~l~i~~~~vs~~l~ 72 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGG--DVTPSELAAAERMRSSNLAALLR 72 (147)
T ss_dssp HHHHHHHHHHHHHHTTS--CBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC--CCCHHHHHHHhCCChhhHHHHHH
Confidence 66777777766654122 49999999999999999995443
No 198
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=73.16 E-value=4.1 Score=33.16 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..|+|+.+|||+.+|++++.-
T Consensus 38 lTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 38 MKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999874
No 199
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=73.08 E-value=2.9 Score=39.37 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 480 ~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
-++|.++||..+|+|+++|. |++++|++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 35899999999999999999 77888876
No 200
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=73.07 E-value=4.6 Score=40.53 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
++.||+..+++-.+|--.-+ .||+|+|+.++||++.|.-++.|
T Consensus 241 l~~Lp~~L~e~a~lRl~~pd---aSL~ELge~l~isKSgVnhRlrK 283 (295)
T 3hyi_A 241 LENLPEDLRRVALVRLRNKE---LSLRELGKKLNLTKSQIYSKLKR 283 (295)
T ss_dssp GGGSCHHHHHHHHHHHHCTT---SCHHHHHHTTTCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHCcc---ccHHHHHHHhCcCHHHHHHHHHH
Confidence 47899999999999975543 89999999999999999966544
No 201
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=72.97 E-value=2.4 Score=38.99 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 480 ~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
-++|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFS----RIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHH----HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 45899999999999999999 778888763
No 202
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=72.90 E-value=2.9 Score=39.37 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |++++|++
T Consensus 177 ~~t~~~iA~~lG~sr~tvs----R~l~~L~~ 203 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVS----RVLASLKR 203 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999998 77788876
No 203
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=72.75 E-value=20 Score=29.28 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 374 VKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 374 i~ka~~~L~~~lg-r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+.++..-+.+... ..++.++||+.+|+|...+....+
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4455555666666 788999999999999999988765
No 204
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=72.60 E-value=3.6 Score=35.51 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 79999999999999999 78888765
No 205
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=72.46 E-value=4 Score=33.31 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=21.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+|.+++|+.+|||+.+|++++.
T Consensus 44 lsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 44 LTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHhCcCHHHHHHHHc
Confidence 9999999999999999999986
No 206
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.40 E-value=8.4 Score=33.76 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=37.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|..++.+
T Consensus 39 ~~~~~~~~~~~glt~~q~~vL~~l~~~~---~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 39 SSELNQALASEKLPTPKLRLLSSLSAYG---ELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHS---EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334444443 59999998888766543 499999999999999999955443
No 207
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=72.40 E-value=21 Score=29.50 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 374 i~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+.++..-+.......++.++||+.+|+|+..+....+
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFK 45 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4445555566667789999999999999999998875
No 208
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=72.29 E-value=5 Score=34.57 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
+.|..+||+.+|||+.+|+. ++++|-
T Consensus 22 ~~~~~ela~~l~vs~~tvs~----~l~~Le 47 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTK----MVQKLD 47 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHH----HHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH----HHHHHH
Confidence 49999999999999999994 455554
No 209
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=72.19 E-value=3.8 Score=32.78 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 463 ~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
++....||..-+..+ ++|..|||+.+|+|+.+|.+++
T Consensus 15 ~~~~~~iL~~L~~~~---~~~~~ela~~l~is~~tvs~~l 51 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRR---KAPFSQIQKVLDLTPGNLDSHI 51 (100)
T ss_dssp SHHHHHHHHHHHHHS---EEEHHHHHHHTTCCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcC---CcCHHHHHHHHCcCHHHHHHHH
Confidence 455566666443222 3899999999999999999543
No 210
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=72.18 E-value=7.7 Score=32.99 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=31.6
Q ss_pred cCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQ-VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509 (525)
Q Consensus 461 ~L~~rER~-VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKL 509 (525)
.+++.++. |+.+.+-.+ . .+..+||+.||||+.+|+.+....-..+
T Consensus 7 ~~t~e~K~~iv~~~~~~g-~--~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENP-D--LRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHHHCT-T--SCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHHHCC-C--CcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 46777764 555543332 1 4566999999999999999987654433
No 211
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=71.99 E-value=5.3 Score=29.85 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=21.7
Q ss_pred CCHHHHHHHHC--CCHHHHHHHHHH
Q 009803 482 KTLQEIGELMG--VSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~Lg--IS~erVRqie~R 504 (525)
+|.+++|+.+| +|+.+|++++..
T Consensus 22 lsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 22 LSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp CCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 99999999999 999999999874
No 212
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=71.98 E-value=5.3 Score=31.92 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.3
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 385 NGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 385 lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.|.+||..|||+.+|+|...|+..+.
T Consensus 21 ~g~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 21 DGAPVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 37899999999999999999988775
No 213
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=71.96 E-value=2.2 Score=39.70 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHHHhcC---C----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLE---D----GRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~---~----g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
...+..+|-.-.+..... + .-|+|.++||..+|+|+++|. |++++|++
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 204 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLS----RAFSRLKA 204 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHH----HHHHHHGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 345666665444433211 1 135889999999999999998 77777775
No 214
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=71.67 E-value=5.4 Score=31.70 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|+++++-
T Consensus 27 lsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 27 LTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999873
No 215
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=71.55 E-value=5.6 Score=35.19 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+...+. .|++.|-.||..-+..+ +.+.|..+||+.+|+++.+|.+++.+
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~~l~~ 85 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRSVH-PEGMATLQIADRLISRAPDITRLIDR 85 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TSCEEHHHHHHHC---CTHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3445555554 48999998887766542 24599999999999999999955443
No 216
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=71.48 E-value=3.8 Score=31.86 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|+++++.
T Consensus 26 ltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 26 LSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHcC
Confidence 89999999999999999999863
No 217
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=71.37 E-value=2.9 Score=38.95 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 4899999999999999998 77888875
No 218
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=71.14 E-value=4.6 Score=30.58 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 24 ~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 24 RTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999863
No 219
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=70.99 E-value=3.7 Score=34.46 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIESS 504 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg----IS~erVRqie~R 504 (525)
+..|++.|..||..-+-. .+.|..||++.+| +|+.+|..++.+
T Consensus 5 ~~~lt~~~~~vL~~l~~~---~~~t~~ela~~l~~~~~~s~~tv~~~l~~ 51 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWMK---KYASANNIIEEIQMQKDWSPKTIRTLITR 51 (123)
T ss_dssp CCCCCHHHHHHHHHHHHH---SSEEHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhC---CCcCHHHHHHHHhccCCCcHhhHHHHHHH
Confidence 346889998888766542 2499999999999 899999855443
No 220
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=70.91 E-value=6.6 Score=34.06 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIESS 504 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg----IS~erVRqie~R 504 (525)
+..|++.|..|+..-+..+ .+.|..||++.++ +++.+|..++.+
T Consensus 4 ~~~lt~~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~r 51 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQR 51 (138)
T ss_dssp GGGCCHHHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 3579999999988776422 2499999999998 899999955443
No 221
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=70.69 E-value=3.6 Score=32.38 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|+.++|+.+|||+.+|++++.+
T Consensus 23 lT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 23 LSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp CCHHHHHHHHSSCHHHHHHTTTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999988765
No 222
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=70.61 E-value=42 Score=30.65 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcccceecccchHHHHH
Q 009803 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372 (525)
Q Consensus 293 ~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ 372 (525)
.-..++..++.++ |++ +-+.+.-.-+++-+...+.-+|.+....+.-.+.-++.
T Consensus 11 ~a~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr--------------------- 64 (200)
T 1ais_B 11 FALSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACR--------------------- 64 (200)
T ss_dssp HHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHH---------------------
Confidence 3344455555554 333 55666666666666655666676554444443333321
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHH
Q 009803 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409 (525)
Q Consensus 373 ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l 409 (525)
..|.+.+..||+..+|++..++....
T Consensus 65 -----------~~~~p~~l~di~~~~~v~~~~i~~~~ 90 (200)
T 1ais_B 65 -----------LLKVPRTLDEIADIARVDKKEIGRSY 90 (200)
T ss_dssp -----------HHTCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred -----------HcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 12456688899999999988887654
No 223
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=70.60 E-value=5.3 Score=35.93 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=38.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 452 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 452 ~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
...+...+. .|++.+..||..-+..+++...|..|||+.+|+++.+|.+++.
T Consensus 55 ~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~ 108 (181)
T 2fbk_A 55 GREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIV 108 (181)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 344555554 5899999998877654422238999999999999999985443
No 224
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=70.17 E-value=4.2 Score=32.84 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHCCCHHH-HHHHHH
Q 009803 481 MKTLQEIGELMGVSRER-IRQIES 503 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~er-VRqie~ 503 (525)
+.|..|||+.+|+++.+ |..++.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~ 53 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKD 53 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHH
Confidence 49999999999999999 985543
No 225
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=70.14 E-value=3.9 Score=31.07 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 22 lsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 22 KTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999999874
No 226
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=70.03 E-value=4.7 Score=32.43 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 23 lsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 23 KTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhC
Confidence 99999999999999999999864
No 227
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=69.90 E-value=5.2 Score=32.94 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|.+++|+.+|||+.+|++++..
T Consensus 42 ltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 42 MTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999999874
No 228
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=69.55 E-value=4.9 Score=34.37 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 455 LEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 455 L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+...+. .|++.+..||..-+..+ +.|..+||+.+|+++.+|..++.+
T Consensus 29 ~~~~~~~~~l~~~~~~iL~~l~~~~---~~~~~~la~~l~~~~~tvs~~l~~ 77 (147)
T 1z91_A 29 YKPLLDKLNITYPQYLALLLLWEHE---TLTVKKMGEQLYLDSGTLTPMLKR 77 (147)
T ss_dssp SHHHHTTTCCCHHHHHHHHHHHHHS---EEEHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCcCcHHHHHHH
Confidence 344443 48888888877665433 489999999999999999954433
No 229
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=69.26 E-value=9 Score=30.62 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..|..|||+.||||..|||..+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 38999999999999999995443
No 230
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=68.87 E-value=4.8 Score=34.44 Aligned_cols=39 Identities=5% Similarity=0.057 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH--CCCHHHHHHHHH
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELM--GVSRERIRQIES 503 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~L--gIS~erVRqie~ 503 (525)
+++-.+.||.+---.+ ++|..+||+.+ |+|+.+|++++.
T Consensus 11 md~~d~~IL~~L~~~g---~~s~~eLA~~l~~giS~~aVs~rL~ 51 (111)
T 3b73_A 11 MTIWDDRILEIIHEEG---NGSPKELEDRDEIRISKSSVSRRLK 51 (111)
T ss_dssp CCHHHHHHHHHHHHHS---CBCHHHHHTSTTCCSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC---CCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 6777788887643222 59999999999 999999996644
No 231
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=68.86 E-value=3.4 Score=35.28 Aligned_cols=39 Identities=5% Similarity=0.044 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.|++.+..||..-+..+ +.|..+||+.+|+|+.+|...+
T Consensus 34 ~l~~~~~~iL~~l~~~~---~~~~~ela~~l~~~~~tvs~~l 72 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDES---PVNVKKVVTELALDTGTVSPLL 72 (142)
T ss_dssp TCCHHHHHHHHHHHHSS---EEEHHHHHHHTTCCTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CcCHHHHHHHHCCChhhHHHHH
Confidence 58999888887765432 4899999999999999998543
No 232
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=68.74 E-value=4 Score=33.05 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHH----HHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEI----GELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EI----Ae~LgIS~erVRqie~ 503 (525)
.|++.+..||..-+.. .+.|..|| |+.+|+++.+|.+++.
T Consensus 5 ~lt~~q~~iL~~l~~~---~~~~~~el~~~la~~l~is~~tvs~~l~ 48 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDN---EGIATYDLYKKVNAEFPMSTATFYDAKK 48 (99)
T ss_dssp SSBCHHHHHHHHHTTC---TTCBHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCcCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3677777777665432 24899999 8999999999995443
No 233
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=68.44 E-value=4.2 Score=32.05 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=20.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 009803 483 TLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 483 Tl~EIAe~LgIS~erVRqie~R 504 (525)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 6899999999999999999753
No 234
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=68.43 E-value=5.5 Score=34.22 Aligned_cols=32 Identities=3% Similarity=0.052 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 469 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 469 VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
|-.+|--.+ +|..|+|+.+|||+.+|+++++-
T Consensus 45 L~~~R~~~g----lTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 45 LNAVIDRAR----LSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp HHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHcC
Confidence 334444445 99999999999999999999873
No 235
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=68.36 E-value=3.4 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
.|+.+||..+|||..+|+++..+.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 699999999999999999987764
No 236
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=68.16 E-value=4.4 Score=34.29 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 455 LEKVLDTLNP-RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 455 L~~aL~~L~~-rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+..++..|.. .-..||.+-. ++ ++|..|||+.+|+|+.+|+++ +++|++
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~--~~--~~~~~eLa~~l~is~~tvs~h----L~~L~~ 57 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLS--RG--PATVSELAKPFDMALPSFMKH----IHFLED 57 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHH--TC--CEEHHHHHTTCCSCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH--hC--CCCHHHHHHHhCcCHHHHHHH----HHHHHH
Confidence 4445555554 4445555443 22 489999999999999999954 455543
No 237
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.92 E-value=5.8 Score=34.17 Aligned_cols=50 Identities=10% Similarity=0.225 Sum_probs=31.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 453 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 453 ~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..+...+. .|++.|-.||..-+..+ +.+.|..+||+.+|+++.+|..+..
T Consensus 28 ~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~~vs~~l~ 79 (148)
T 3jw4_A 28 TSADARLAELGLNSQQGRMIGYIYENQ-ESGIIQKDLAQFFGRRGASITSMLQ 79 (148)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHT-TTCCCHHHHHHC------CHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhCC-CCCCCHHHHHHHHCCChhHHHHHHH
Confidence 34444453 59999999888766542 2349999999999999999985443
No 238
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=67.70 E-value=12 Score=34.72 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|++.+..||..-+..+ +.|..+||+.+|+++.+|..++.
T Consensus 45 gLt~~q~~iL~~L~~~~---~~t~~eLa~~l~i~~stvs~~l~ 84 (207)
T 2fxa_A 45 DLNINEHHILWIAYQLN---GASISEIAKFGVMHVSTAFNFSK 84 (207)
T ss_dssp TCCHHHHHHHHHHHHHT---SEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CcCHHHHHHHHCCCHHHHHHHHH
Confidence 58999999987766543 39999999999999999995443
No 239
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=67.60 E-value=4.7 Score=40.73 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+..++||.+-. ..+|.+.|-+|||+.||||+.+|++.++.-
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L 43 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVIDQL 43 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 44556776543 224567999999999999999999988653
No 240
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=67.53 E-value=4.7 Score=34.36 Aligned_cols=49 Identities=8% Similarity=0.033 Sum_probs=36.5
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 453 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 453 ~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
..+...+. .|++.+-.||..-+.. ++.+.|..|||+.+|+++.+|..++
T Consensus 24 ~~~~~~~~~~~lt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l 74 (127)
T 2frh_A 24 KLKSLIKKEFSISFEEFAVLTYISEN-KEKEYYLKDIINHLNYKQPQVVKAV 74 (127)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHT-CCSEEEHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhc-cCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 33444454 5999998888877653 2235999999999999999998544
No 241
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=67.33 E-value=1.1 Score=45.50 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+.+++..||..-|..+ +.|..|||+.||||+.+||..+.+.
T Consensus 18 ~~~r~~~iL~~l~~~~---~~t~~eLa~~l~vs~~Tv~r~l~~L 58 (345)
T 2o0m_A 18 VLQERFQILRNIYWMQ---PIGRRSLSETMGITERVLRTETDVL 58 (345)
T ss_dssp --------------------------------------------
T ss_pred hhHHHHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5567777777665543 3999999999999999999665543
No 242
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=67.32 E-value=4.4 Score=30.93 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
-++..|+++.+|||+.+|..+..+.
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 4799999999999999999888764
No 243
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=66.98 E-value=3.2 Score=36.08 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 009803 467 RQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIES 503 (525)
Q Consensus 467 R~VL~lRygl~~g~~~Tl~EIAe~Lg-----IS~erVRqie~ 503 (525)
..++...+.. ++.++|++|+|+.+| ||+..|.++++
T Consensus 11 ~~L~~~~~~~-~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 11 NRLFDTVYPP-GRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp HHHHHHSSCT-TTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhhccC-CCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 3344433332 456799999999998 99999999986
No 244
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=66.54 E-value=59 Score=34.21 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..-|.+|||+.+|+|.++|+.++.
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~ 417 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIEN 417 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 677999999999999999998764
No 245
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=66.49 E-value=7 Score=29.46 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 465 rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
-|+.+|..-.-..+ -+..+.|+.||||+.++...+
T Consensus 19 ~E~~~i~~aL~~~~---gn~~~aA~~LGisr~tL~rkl 53 (63)
T 3e7l_A 19 FEKIFIEEKLREYD---YDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHTT---TCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHCcCHHHHHHHH
Confidence 35555554443333 378899999999999988543
No 246
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=66.49 E-value=2.4 Score=32.87 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..|+.+||+..|||+.+|+..++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 36999999999999999998764
No 247
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=66.37 E-value=5.4 Score=33.37 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|.+|+|+.+|||+.+|++++..
T Consensus 35 ltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 35 WSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp CCHHHHHHHHTCCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999763
No 248
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=66.36 E-value=2.6 Score=31.75 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie 502 (525)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 599999999999999999996
No 249
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=66.34 E-value=7.6 Score=35.98 Aligned_cols=41 Identities=27% Similarity=0.184 Sum_probs=32.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..|+|-|+.....+....| +|.++||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~~~G---~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGRELAKG---KKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888776655554332 8999999999999999998754
No 250
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=66.34 E-value=5.2 Score=37.77 Aligned_cols=30 Identities=30% Similarity=0.624 Sum_probs=25.6
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|..+ |-.++|+.||||+.+|| .|++.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34567 89999999999999999 78888865
No 251
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=66.18 E-value=7 Score=32.42 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 23 lsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 23 LKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999873
No 252
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=66.12 E-value=6.5 Score=33.37 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 471 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 471 ~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.+|-..+ +|++|+|+.+|||+.+|++++.-
T Consensus 14 ~~R~~~g----lSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 14 KKREERR----ITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHHHTTT----CCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHHHcC----CCHHHHHHHHCcCHHHHHHHHCC
Confidence 4554455 99999999999999999999975
No 253
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=66.04 E-value=5.1 Score=38.32 Aligned_cols=30 Identities=40% Similarity=0.611 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|..++..++|+.||||+.+|| +||+.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3456899999999999999999 88888864
No 254
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=65.99 E-value=6.3 Score=31.18 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 31 lsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 31 LSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999874
No 255
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=65.98 E-value=6.2 Score=32.98 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=20.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+|..++|+.+|||+.+|+++++
T Consensus 28 ltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 28 MSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 9999999999999999999886
No 256
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=65.84 E-value=7.8 Score=30.93 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|+++++.
T Consensus 22 ltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 22 VSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 89999999999999999999874
No 257
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=65.77 E-value=7.2 Score=32.74 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 37 ltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 37 LTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999999873
No 258
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=65.59 E-value=4.4 Score=37.91 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|..+|-.++|+.||||+..|| .|+++|..
T Consensus 32 pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4556899999999999999999 78888875
No 259
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=65.55 E-value=7.1 Score=32.06 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie 502 (525)
..|..|||+.||||..|||..+
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHH
Confidence 3899999999999999999544
No 260
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=65.47 E-value=1.4 Score=36.45 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..+||+.||||+.+|+ +|++.|..
T Consensus 32 g~~lps~~eLa~~~~vSr~tvr----~al~~L~~ 61 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVS----RALAVLKS 61 (102)
T ss_dssp TSBCCCHHHHHHHSSSCTTHHH----HHTTTTTT
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4446 99999999999999999 56666654
No 261
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=65.39 E-value=22 Score=27.20 Aligned_cols=54 Identities=7% Similarity=0.013 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~----~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
.+|+.+..+|.-.|...-..| ..-.+||..+|+|...|.........|+++.+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 578888899988887321112 346799999999999999999999999887543
No 262
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=65.33 E-value=3.9 Score=38.25 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHCCCH-HHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSR-ERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~-erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 699999999999999 7998 77788875
No 263
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=65.31 E-value=14 Score=30.95 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 465 rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
|+-.+...|-..+ +|+.+||+.||-...||. .|.+|+.+.+.
T Consensus 38 RqiAmYL~r~~t~----~Sl~~IG~~fgRDHsTV~----ha~~ki~~~~~ 79 (101)
T 3pvv_A 38 RQIAMYLCRELTD----LSLPKIGQAFGRDHTTVM----YAQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHHHCC----CCHHHHHHHTTCCHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHCCCHHHHH----HHHHHHHHHHH
Confidence 4334444444455 999999999999999998 45555555443
No 264
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=64.97 E-value=11 Score=35.51 Aligned_cols=30 Identities=30% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+.+.|..+||+.||+|+.+|+. ++++|.+
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~----~l~~Le~ 46 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTE----MMKKLLA 46 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred cCCCcCHHHHHHHHCCChhHHHH----HHHHHHH
Confidence 34569999999999999999994 5555543
No 265
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=64.90 E-value=6.5 Score=36.31 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 468 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 468 ~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.+-.+|--.+ +|++|+|+.+|||+.++.+++.-
T Consensus 94 ~lk~lR~~~g----lTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 94 MFGDWMHRNN----LSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp HHHHHHHHTT----CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHcC----CCHHHHHHHhCCCHHHHHHHHcC
Confidence 4556665555 99999999999999999998873
No 266
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=64.65 E-value=17 Score=31.05 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-++||..
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 58999999987754 4567889999999998 57888999887777777753
No 267
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=64.64 E-value=15 Score=26.80 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|...|..+.. .+....+||..+|+|...|+.....-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4677788888888876532 12356789999999999999998887777765
No 268
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=64.39 E-value=6.7 Score=34.57 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 470 L~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
-.+|-..+ +|..|+|+.+|||+.+|+++++.
T Consensus 74 ~~~R~~~g----lTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 74 VSLRMKKG----FTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHHHHHTT----CCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHcC----CCHHHHHHHHCcCHHHHHHHHcC
Confidence 33444445 99999999999999999999874
No 269
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=64.39 E-value=8.7 Score=32.20 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIESS 504 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg----IS~erVRqie~R 504 (525)
..|++.|..|+..-+-.+ +.|..||++.++ +++.+|..++.|
T Consensus 6 ~~Lt~~q~~vL~~L~~~~---~~t~~el~~~l~~~~~~~~~Tvt~~l~r 51 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDKK---SVSANEIVVEIQKYKEVSDKTIRTLITR 51 (126)
T ss_dssp CCCCHHHHHHHHHHHHSS---SEEHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcC---CCCHHHHHHHHhhcCCCChhhHHHHHHH
Confidence 368999999988776533 499999999997 589999965544
No 270
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=64.35 E-value=7.5 Score=31.94 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=34.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKL 509 (525)
..|++.|..|+..-+..+ ....+.+||++.+|++..+|. ++|++|
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g-~~gi~qkeLa~~~~l~~~tvt----~iLk~L 60 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAG-NKGIWSRDVRYKSNLPLTEIN----KILKNL 60 (91)
T ss_dssp CCSCSSHHHHHHHHHHHC-TTCEEHHHHHHHTTCCHHHHH----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHcC-CCCcCHHHHHHHHCCCHHHHH----HHHHHH
Confidence 467888888888776432 123999999999999999988 555555
No 271
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=64.11 E-value=7.8 Score=31.65 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999875
No 272
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=64.09 E-value=12 Score=29.89 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
..++.+..+|.-.|..+-. .+....+||..+|+|...|.........|.|+.
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 3567777888888776522 225678999999999999999999998888763
No 273
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=64.06 E-value=6.7 Score=31.46 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 18 ltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 18 LSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp CCHHHHHHHHCCCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999998873
No 274
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=63.99 E-value=9.8 Score=32.86 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHh-cCCC-CCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFG-LEDG-RMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRyg-l~~g-~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|++.|-.|+..-+. .+.| ...|..+||+.+|+|..+|.+++.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~ 74 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRR 74 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 356666554443322 2223 3379999999999999999955443
No 275
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=63.52 E-value=4.1 Score=36.85 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|+.|+|+.||||+.+|+++++.
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHC
Confidence 89999999999999999987653
No 276
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=63.44 E-value=7.3 Score=32.95 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+....||.+-. ++ ++|..|||+.+|+|+.+|++ .+++|++
T Consensus 21 ~~r~~IL~~L~--~~--~~~~~eLa~~lgis~stvs~----~L~~L~~ 60 (118)
T 2jsc_A 21 PTRCRILVALL--DG--VCYPGQLAAHLGLTRSNVSN----HLSCLRG 60 (118)
T ss_dssp HHHHHHHHHHH--TT--CCSTTTHHHHHSSCHHHHHH----HHHHHTT
T ss_pred HHHHHHHHHHH--cC--CCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 44556666533 22 38999999999999999994 4555554
No 277
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=63.15 E-value=22 Score=27.13 Aligned_cols=51 Identities=14% Similarity=0.308 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|+.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 566677777777765422 225678999999999999999998888887763
No 278
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=62.76 E-value=8.9 Score=33.84 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++.+.|.+|||+.+|+|+..|+++ +.+|++
T Consensus 25 ~~~~~s~~~IA~~~~i~~~~l~ki----l~~L~~ 54 (143)
T 3t8r_A 25 GQGCISLKSIAEENNLSDLYLEQL----VGPLRN 54 (143)
T ss_dssp TSCCEEHHHHHHHTTCCHHHHHHH----HHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 446899999999999999999954 555654
No 279
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=62.52 E-value=7.8 Score=32.12 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=30.1
Q ss_pred HHHHHhcCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHH
Q 009803 455 LEKVLDTLNPRERQ-VVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIE 502 (525)
Q Consensus 455 L~~aL~~L~~rER~-VL~lRygl~~g~~~Tl~EIAe~L-gIS~erVRqie 502 (525)
+..+++.|+.+-+. ||..-+ ++ ++++.||++.+ |+|+.+|.+.+
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~--~~--~~~~~eLa~~l~~is~~tls~~L 49 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT--HG--KKRTSELKRLMPNITQKMLTQQL 49 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT--TC--CBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH--hC--CCCHHHHHHHhcCCCHHHHHHHH
Confidence 34556667766553 333322 22 49999999999 99999999543
No 280
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=62.49 E-value=6.5 Score=34.42 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 482 KTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|..+||+.||||+.+|+ +++++|.+
T Consensus 55 ~~~~~la~~l~vs~~tvs----~~l~~Le~ 80 (155)
T 2h09_A 55 ARQVDMAARLGVSQPTVA----KMLKRLAT 80 (155)
T ss_dssp CCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCHHHHHHHhCcCHHHHH----HHHHHHHH
Confidence 899999999999999999 45555544
No 281
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=62.30 E-value=11 Score=33.39 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++.+.|.+|||+.+|||+..|++ .+.+|++
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~k----il~~L~~ 56 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIRK----IMSYLKQ 56 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 45679999999999999999994 4556654
No 282
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=62.25 E-value=13 Score=33.63 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++.+.|.++||+.+|+|+..|++ .+.+|++
T Consensus 41 ~~~~~s~~eIA~~~~i~~~~l~k----il~~L~~ 70 (159)
T 3lwf_A 41 GDGPISLRSIAQDKNLSEHYLEQ----LIGPLRN 70 (159)
T ss_dssp TSCCBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 45679999999999999999995 4555654
No 283
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=62.21 E-value=44 Score=27.83 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 376 ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
++..-+.......++.++||+.+|+|+..+....+
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 11 RVCTVINNNIAHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp HHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34444555556788999999999999999988764
No 284
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=62.12 E-value=10 Score=32.04 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 26 lsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 26 LTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCHHHHHHHhCcCHHHHHHHHCC
Confidence 99999999999999999999864
No 285
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=62.02 E-value=6.6 Score=30.39 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=21.2
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Q 009803 483 TLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 483 Tl~EIAe~LgIS~erVRqie~RA 505 (525)
|..++|+.+|||+.+|++++..-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHCC
Confidence 89999999999999999999753
No 286
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=60.96 E-value=7.9 Score=37.00 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 467 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 467 R~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
|-+-.|.+....+.++|+.|||+.+|+++.+|..++.
T Consensus 7 r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~ 43 (241)
T 2xrn_A 7 RAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIIN 43 (241)
T ss_dssp HHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3333344443444569999999999999999995543
No 287
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=60.71 E-value=17 Score=30.70 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|.+.|.++|.+.+ .++..+|++.+.+-.+||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 58999999887754 4467889999999999 57888999888888777764
No 288
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=60.60 E-value=5.7 Score=34.92 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIES 503 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~Lg-----IS~erVRqie~ 503 (525)
.|=+.++...+.. ++.++|++|+|+.+| ||+..|.++++
T Consensus 10 ~RL~~L~~~~~~~-~~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 10 ARLNRLFDTVYPP-GRGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp HHHHHHHHHCCCT-TSCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccc-CCCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 3333444433322 456799999999999 99999999986
No 289
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=60.49 E-value=24 Score=28.17 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 461 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~----~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
.++..+..+|.-.|...-..| ..-.+||..+|+|...|..+......|.+..+..
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 366777777777665431112 3567899999999999999999999998876543
No 290
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=60.32 E-value=12 Score=35.49 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.....|..-|.++ .+.+..+||+.||+|+.+|+ .++++|++
T Consensus 12 ~ls~s~EdYLk~I~~L~--~~V~~~~LA~~LgvS~~SV~----~~lkkL~e 56 (200)
T 2p8t_A 12 YPEYTVEDVLAVIFLLK--EPLGRKQISERLELGEGSVR----TLLRKLSH 56 (200)
T ss_dssp --CCCHHHHHHHHHHTT--SCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--CCccHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 35555455555555553 45899999999999999999 67778876
No 291
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=60.19 E-value=36 Score=28.83 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 374 i~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+.++..-+.+.....++.++||+.+|+|...+..+.+
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455555666667789999999999999999988765
No 292
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=59.83 E-value=13 Score=37.27 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 463 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 463 ~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
.++...|+.+- ..+...|.+|||+.||||+.+|++.+..-
T Consensus 4 ~~r~~~Il~~L---~~~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 4 NTVPLKLIALL---ANGEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp CHHHHHHHHHH---TTSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHH---HcCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45666676654 24456999999999999999999988743
No 293
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=59.80 E-value=21 Score=28.60 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|++.|-++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCC
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 58999999988755 4567889999999998 26788888877777777754
No 294
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=59.79 E-value=8.4 Score=36.49 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=25.3
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|..+ +-.++|+.||||+..|| .||++|..
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 45567 67899999999999999 78888865
No 295
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=59.73 E-value=8 Score=32.24 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|+++++.
T Consensus 42 lsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 42 VTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999999863
No 296
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=59.69 E-value=9.2 Score=31.16 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|+++++.
T Consensus 32 ltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 32 INTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998863
No 297
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=59.63 E-value=34 Score=27.16 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 461 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~----~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
.+++.+..+|.-.|..+...+ ....+||..+|++...|+.+......|.|+....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 467788889988884221112 3467899999999999999999999999876544
No 298
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=59.58 E-value=6.4 Score=37.55 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|..++-.++|+.||||+..|| .||++|..
T Consensus 48 pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 48 PGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4556899999999999999999 78888864
No 299
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=59.45 E-value=6.6 Score=36.78 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 469 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 469 VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|+.-.|- .|..++-.++|+.||||+..|| .|+++|..
T Consensus 29 I~~g~l~--pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 29 LELGTFV--PGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHTSSC--TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCCC--CCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4444433 4556889999999999999999 78888864
No 300
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=59.42 E-value=8.8 Score=36.77 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.+.++|+.|||+.+|+++.+|..++.
T Consensus 20 ~~~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 20 NPGDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp CSSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34469999999999999999995544
No 301
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=59.29 E-value=5.4 Score=33.22 Aligned_cols=37 Identities=16% Similarity=-0.031 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 466 ER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
++.-|.+.+..+ + .|+.|+|..+|||.+.|.++...-
T Consensus 37 ~Kl~VV~~~~~g-~--~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 37 RKAAVVKAVIHG-L--ITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp HHHHHHHHHHTT-S--SCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-C--CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444444443 2 899999999999999999987654
No 302
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=59.11 E-value=13 Score=32.63 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 508 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkK 508 (525)
.|.++|... |. | .+..|+|..+|+|..+|++|..+..+.
T Consensus 81 ~Rn~~I~~~-f~-G----~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-FN-G----RNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-CC-S----SCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-hC-C----CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 466666664 42 3 899999999999999999988766553
No 303
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=58.85 E-value=12 Score=28.09 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=16.5
Q ss_pred CHHHHHHHHCCCHHHHHHH
Q 009803 483 TLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 483 Tl~EIAe~LgIS~erVRqi 501 (525)
+..+.|+.||||+.++...
T Consensus 35 n~~~aA~~LGIsr~tL~rk 53 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANK 53 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHH
Confidence 6789999999999998744
No 304
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=58.77 E-value=5.1 Score=36.69 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999998 67777765
No 305
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=58.76 E-value=17 Score=29.90 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 48999999988755 4567889999999998 46788899888777777754
No 306
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=58.22 E-value=5 Score=30.67 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+|.+|+|+.||||+.||++.....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 689999999999999999887654
No 307
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=57.93 E-value=7.2 Score=31.71 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.-|+.+|..-+-..+| +..+.|+.||||+.+++..+
T Consensus 50 ~~E~~~i~~aL~~~~g---n~~~aA~~LGIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQG---HKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTT---CTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---CHHHHHHHHCcCHHHHHHHH
Confidence 4567777655544443 66799999999999987443
No 308
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=57.93 E-value=37 Score=30.70 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=30.6
Q ss_pred HhcCCHHHHHHHHHH--Hhc---CCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWR--FGL---EDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 459 L~~L~~rER~VL~lR--ygl---~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
=..+++..+.-..++ -+. ++++.+|..|||+.||||+.|+.++..
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 345777666654432 221 122238999999999999999999876
No 309
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=57.91 E-value=41 Score=24.68 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGL---EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl---~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|.-.|.. +.. .+....+||..+|+|...|.........|.|.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4677888888888876 321 11235689999999999999999888887764
No 310
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=57.71 E-value=11 Score=32.52 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+|++|+|+.+|||+.+|+++++--
T Consensus 17 ltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 17 MTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp CCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCC
Confidence 999999999999999999999753
No 311
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=57.46 E-value=8.1 Score=31.16 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 477 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 477 ~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+.|+|++-.+||+.+||.+.-|. +++++|++.
T Consensus 30 eaG~PlkageIae~~GvdKKeVd----Kaik~LKkE 61 (80)
T 2lnb_A 30 EAGSPVKLAQLVKECQAPKRELN----QVLYRMKKE 61 (80)
T ss_dssp HHTSCEEHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred HcCCCCCHHHHHHHHCCCHHHHH----HHHHHHHHc
Confidence 45789999999999999998887 678888763
No 312
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=57.26 E-value=12 Score=30.15 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred CCHHHHHHHHCCCHHH----HHHHHHH
Q 009803 482 KTLQEIGELMGVSRER----IRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~er----VRqie~R 504 (525)
+|..++|+.+|||+.+ |+++++.
T Consensus 15 lsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 15 ISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 9999999999999999 8888764
No 313
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=57.21 E-value=23 Score=26.13 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 3567777888888866532 11356789999999999999999888777664
No 314
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=57.07 E-value=9.3 Score=36.64 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..|+|+.||||+.+|| +|+..|..
T Consensus 31 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 60 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVR----QALSNLVN 60 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 68888865
No 315
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=56.66 E-value=17 Score=30.20 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 58999999887754 4567889999999999 56778899888777777753
No 316
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=56.63 E-value=22 Score=25.98 Aligned_cols=51 Identities=8% Similarity=0.114 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|.
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 3567777888888866532 11356789999999999999998887777664
No 317
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=56.57 E-value=13 Score=35.69 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 472 WRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 472 lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
|.+....+.++|+.|||+.+|+++.+|..++.
T Consensus 20 L~~l~~~~~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 20 LLAFDAQRPNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp HHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34433334569999999999999999995443
No 318
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=56.57 E-value=32 Score=26.10 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|+..
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3567778888888865422 2246789999999999999999988888887644
No 319
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=56.44 E-value=8.4 Score=36.83 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.8
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |-.|+|+.||||+.+|| +|+..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 78888865
No 320
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=56.23 E-value=1.2e+02 Score=27.51 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=26.6
Q ss_pred HHHhHHHHHHhhcCCCCchHHhHHhhcCCHHHHHH
Q 009803 244 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278 (525)
Q Consensus 244 ~le~~~~~l~~~~g~~pt~~ewa~a~g~d~~~L~~ 278 (525)
.+.+....+....|+.|+..+.+...|++...+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (239)
T 1rp3_A 100 RIKEVVEKLKEKLGREPTDEEVAKELGISTEELFK 134 (239)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHH
Confidence 34455667777789999999999999988765543
No 321
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=56.22 E-value=6.9 Score=30.71 Aligned_cols=24 Identities=13% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
-+|++|.|+.|||++.+|+++.+.
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 389999999999999999988654
No 322
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=56.21 E-value=6.5 Score=30.38 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|..++|+.||||+.+|++++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 5999999999999999998773
No 323
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=56.11 E-value=24 Score=26.15 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3677777888888866532 11346789999999999999998887777664
No 324
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=56.02 E-value=19 Score=29.93 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=30.4
Q ss_pred HHHHHhcCCHHHH-HHHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHH
Q 009803 455 LEKVLDTLNPRER-QVVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIE 502 (525)
Q Consensus 455 L~~aL~~L~~rER-~VL~lRygl~~g~~~Tl~EIAe~L-gIS~erVRqie 502 (525)
+..++..++.+-+ .||..-+ ++ ++++.||++.+ |+|+.+|.+++
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~--~~--~~~~~eLa~~l~~is~~tvs~~L 57 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELF--QG--TKRNGELMRALDGITQRVLTDRL 57 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHH--HS--CBCHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH--hC--CCCHHHHHHHhccCCHHHHHHHH
Confidence 4556777776544 3444333 22 39999999999 99999999543
No 325
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=55.92 E-value=11 Score=34.29 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+|+.+||+.||+|+.+|++++.
T Consensus 159 ~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 159 LGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHh
Confidence 8999999999999999997654
No 326
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=55.83 E-value=16 Score=34.96 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
..|++-|+.....+.... | +|.++||+.+|+|+.+|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~-g--~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEM-G--LTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHT-T--CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-C--CCHHHHHHHHCcCHHHHHHHHH
Confidence 468888776555444422 2 8999999999999999997764
No 327
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=55.67 E-value=9.2 Score=31.76 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 50 lsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 50 MTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp CCHHHHHHHHTCCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999998863
No 328
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=55.66 E-value=12 Score=34.11 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|++|+|+.+|||+.+|+++++.
T Consensus 24 ~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 24 MDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999874
No 329
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=55.62 E-value=9.2 Score=36.53 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTIT----KSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4456 89999999999999999 68888865
No 330
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=55.17 E-value=12 Score=31.02 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|...|.++|.+.+ .++..+|++.+.+-.+||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 85 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhhc
Confidence 58999999888754 4567889999999999 56778888887777777753
No 331
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=55.15 E-value=21 Score=27.44 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 461 TLNPRERQVVRWRFGL---EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 461 ~L~~rER~VL~lRygl---~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+++.+..+|.-.|.. +-. ....-.+||..+|+|...|.........|.+..+
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4677777788877753 211 1134578999999999999999999999888754
No 332
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=54.80 E-value=17 Score=26.92 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=19.3
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q 009803 483 TLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 483 Tl~EIAe~LgIS~erVRqie 502 (525)
|+.++|+.+|||+.+|++++
T Consensus 15 s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 89999999999999999987
No 333
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=54.78 E-value=9.6 Score=36.70 Aligned_cols=30 Identities=37% Similarity=0.412 Sum_probs=25.3
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.|..+ |-.|+|+.||||+.||| +|+..|..
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34456 99999999999999999 78888865
No 334
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=54.69 E-value=6.3 Score=35.18 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=1.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
...+.++|-.-.+...-+-..++|.++||..+|+|+++|..+.+
T Consensus 147 ~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~ 190 (194)
T 3dn7_A 147 HMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp HHC-----------------------------------------
T ss_pred hcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHH
Confidence 34555555433222111222458999999999999999995443
No 335
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=54.61 E-value=11 Score=36.98 Aligned_cols=29 Identities=24% Similarity=0.092 Sum_probs=24.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |-.++|+.||||+.+|| +|+..|..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3446 99999999999999999 78888865
No 336
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.50 E-value=25 Score=27.54 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 566667777777765421 11356789999999999999999998888887653
No 337
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=54.48 E-value=8.4 Score=34.30 Aligned_cols=39 Identities=5% Similarity=0.188 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.+++.+++++.......+ .+..+||+.||+|+.+|++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~---~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 139 SVDRLEWEHIQRVLAENN---NNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp C---CHHHHHHHHHHHTT---SCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc---ccHHHHHHHcCCcHHHHHHHH
Confidence 355667777766554332 799999999999999998544
No 338
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=54.46 E-value=44 Score=25.36 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 3567777888888866532 2256789999999999999999988888887654
No 339
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=54.42 E-value=12 Score=30.19 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=16.6
Q ss_pred CHHHHHHHHCCCHHHHHHH
Q 009803 483 TLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 483 Tl~EIAe~LgIS~erVRqi 501 (525)
+..+.|+.||||+.++...
T Consensus 56 N~s~AA~~LGISR~TLyrK 74 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRI 74 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHH
Confidence 7889999999999998744
No 340
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=54.37 E-value=15 Score=34.18 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 009803 464 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 464 ~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqi 501 (525)
+|++.|+.+---. ...|.+|+|+.||||..|||.=
T Consensus 12 eR~~~i~~~l~~~---~~~~~~~la~~~~vs~~TiRrD 46 (190)
T 4a0z_A 12 KRREAIRQQIDSN---PFITDHELSDLFQVSIQTIRLD 46 (190)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCEeHHHHHHHHCCCHHHHHHH
Confidence 3555555553322 2389999999999999999943
No 341
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.85 E-value=26 Score=26.67 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|+.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 566667777777765421 113567899999999999999998888887764
No 342
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=53.84 E-value=6.3 Score=37.39 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHhcC-CCCCCCH--HHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLE-DGRMKTL--QEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~-~g~~~Tl--~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
.|++.+..+|..-|.+. +| .|. .+||+.+|+|+.+|+. ++++|-
T Consensus 3 ~lt~~~e~~L~~L~~l~~~~--~~~~~~~La~~l~vs~~tvs~----~l~~Le 49 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEEEG--VTPLRARIAERLDQSGPTVSQ----TVSRME 49 (230)
T ss_dssp TTSSHHHHHHHHHHHHHHHT--SCCCHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 47777777776555442 23 555 9999999999999995 555554
No 343
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=53.73 E-value=12 Score=38.15 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCHHHHHHHHH---HHhcCCCCCCCHHHHHHHH--CCCHHHHHHHH
Q 009803 462 LNPRERQVVRW---RFGLEDGRMKTLQEIGELM--GVSRERIRQIE 502 (525)
Q Consensus 462 L~~rER~VL~l---Rygl~~g~~~Tl~EIAe~L--gIS~erVRqie 502 (525)
|++|++.||.. .| +..+.|.+.+++++.+ |||..|||+-.
T Consensus 15 l~eR~~~IL~~i~~~y-l~~~~pV~s~~La~~~~l~VS~aTIRrDL 59 (338)
T 1stz_A 15 LNDRQRKVLYCIVREY-IENKKPVSSQRVLEVSNIEFSSATIRNDM 59 (338)
T ss_dssp CCHHHHHHHHHHHHHH-HHHCSCBCHHHHHHHSCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCccHHHHHHHhCCCCCHHHHHHHH
Confidence 88999999873 12 2345689999999999 99999999443
No 344
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=53.54 E-value=7 Score=34.51 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHH-hcCCCCCCCHHHHHH----HH--CCCHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRF-GLEDGRMKTLQEIGE----LM--GVSRERIRQIESSA 505 (525)
Q Consensus 461 ~L~~rER~VL~lRy-gl~~g~~~Tl~EIAe----~L--gIS~erVRqie~RA 505 (525)
.|+-.|+.-|+.+| -.+++ +|..+||. .| ||++.+|+.++..-
T Consensus 11 ~lT~~qK~~i~~~~~~~~~~--~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQLQNR--SGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHSSSSC--CCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 57777887777777 33333 89999999 99 99999999988663
No 345
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=53.47 E-value=28 Score=26.29 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|...
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 3577788888888865421 1134678999999999999999988888887643
No 346
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=53.46 E-value=13 Score=33.72 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|++++|+.+|||+.+|+++++.
T Consensus 25 ltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 25 LSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp CCHHHHHHHHSSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 347
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=53.36 E-value=1.4 Score=39.60 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
++.-.+.|+. .+..+ ..+|..+||+.+|+|+.+|| +++++|..
T Consensus 11 ~d~l~~~Il~-~l~~~--~~ls~~eLa~~lgvSr~~vr----~al~~L~~ 53 (163)
T 2gqq_A 11 LDRIDRNILN-ELQKD--GRISNVELSKRVGLSPTPCL----ERVRRLER 53 (163)
T ss_dssp CCSHHHHHHH-HHHHC--SSCCTTGGGTSSSCCTTTSS----STHHHHHH
T ss_pred hhHHHHHHHH-HHHhC--CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 5666677777 55433 34899999999999999999 67777764
No 348
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=53.08 E-value=78 Score=27.53 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=21.6
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhCCC
Q 009803 389 PNNEEVAEATGLSMKRLHAVLLSPK 413 (525)
Q Consensus 389 Pt~eEIA~~lgis~~~v~~~l~~~~ 413 (525)
-+..+||+.+|++...|..++....
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4788999999999999999987543
No 349
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.06 E-value=41 Score=26.33 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhcCC---C--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLED---G--RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~---g--~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+++.+..+|...|-.+. . ......+||..+|++...|+.+......|.|..
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 56777778877775430 1 013467899999999999999999988888763
No 350
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=53.05 E-value=8.1 Score=32.35 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
+|..|+|+.+|||..|+|..+..++
T Consensus 2 ~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 8999999999999999999987754
No 351
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=52.80 E-value=9.2 Score=31.62 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..++|+.+|||+.+|++++..
T Consensus 25 lsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 25 LKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998863
No 352
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=52.62 E-value=38 Score=25.68 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|....
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3567777888888865422 11346789999999999999999888888876543
No 353
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=52.58 E-value=32 Score=25.64 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+.
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 3567777788888766532 113567899999999999999998888777753
No 354
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=52.53 E-value=13 Score=36.00 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 479 GRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 479 g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+.++|+.|||+.+|+++.+|..++.
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3469999999999999999995443
No 355
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=52.21 E-value=10 Score=35.94 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLE-DGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~-~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|++.+..+|..-|.+. +|...+..+||+.||+++.+|.+++.
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~ 46 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVA 46 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 46666667766666542 23223559999999999999995433
No 356
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=51.99 E-value=22 Score=26.27 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 3567778888888866422 11346789999999999999999888777765
No 357
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.99 E-value=28 Score=26.58 Aligned_cols=51 Identities=6% Similarity=0.120 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 566777777777765422 113567899999999999999998888887764
No 358
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=51.95 E-value=12 Score=34.75 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 468 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 468 ~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|+.++ ..+ +|+.+||+.||+|+.+|..++.
T Consensus 167 ~i~~~~-~~G----~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 167 RVVEML-EEG----QAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHh
Confidence 455553 333 8999999999999999987653
No 359
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=51.92 E-value=27 Score=27.14 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
-+..+..+|.-.|...-. .+....+||..+|+|+..|+.+...-..|+|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 345667777777776522 125678999999999999999999999888864
No 360
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=51.83 E-value=28 Score=28.19 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|+..|-++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 58999999887754 4567889999999988 35667788777766666653
No 361
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=51.81 E-value=33 Score=26.32 Aligned_cols=55 Identities=9% Similarity=0.110 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHh---cCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 461 TLNPRERQVVRWRFG---LEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 461 ~L~~rER~VL~lRyg---l~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
.+++.+..+|.-.|. .+.. ....-.+||..+|+|...|..+......|.|.....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 467788888888883 2211 113467899999999999999999999998875543
No 362
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=51.59 E-value=19 Score=31.69 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
++++.||++.+|||+.+|.+++.
T Consensus 37 ~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 37 LTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp CCSHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 49999999999999999995443
No 363
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=51.45 E-value=1e+02 Score=29.06 Aligned_cols=35 Identities=11% Similarity=-0.046 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 376 ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
++...+.+......+.+++|+.+|+|+..+..+.+
T Consensus 173 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33344445556678999999999999999998865
No 364
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=51.32 E-value=14 Score=35.74 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 471 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 471 ~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
.|.+....+.++|+.|||+.+|+++.+|..++.
T Consensus 26 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~ 58 (265)
T 2ia2_A 26 VIRCFDHRNQRRTLSDVARATDLTRATARRFLL 58 (265)
T ss_dssp HHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334443334569999999999999999995543
No 365
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.30 E-value=37 Score=26.62 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
+++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 567777888888765422 113467899999999999999998888888775543
No 366
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=51.25 E-value=43 Score=28.93 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC---------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 455 LEKVLDTLNPRERQVVRWRFGLEDGR---------MKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 455 L~~aL~~L~~rER~VL~lRygl~~g~---------~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|-.+--.|+..|+.||.+-...=+.. ..+..|+++.+|++..+..+.+..|.++|.+
T Consensus 12 Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~ 77 (132)
T 1hkq_A 12 LIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFN 77 (132)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhh
Confidence 44566689999999988865543221 2678999999999999999999999999865
No 367
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=51.18 E-value=12 Score=33.84 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+.+.|.++||+.+|||+..|++ .+.+|++
T Consensus 25 ~~~~~s~~~IA~~~~is~~~l~k----il~~L~~ 54 (162)
T 3k69_A 25 RDSKVASRELAQSLHLNPVMIRN----ILSVLHK 54 (162)
T ss_dssp TTSCBCHHHHHHHHTSCGGGTHH----HHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 35679999999999999999995 4556654
No 368
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=51.15 E-value=26 Score=28.55 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 374 i~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+.++..-+.......++.++||+.+|+|+..+....+
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk 40 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQ 40 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4455555666777788999999999999999998875
No 369
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=51.05 E-value=82 Score=24.59 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-C--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 448 KKFMKEDLEKVLDTLNPRERQVVRWRFGL-E--DGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 448 ~~~~~~~L~~aL~~L~~rER~VL~lRygl-~--~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
...+...|. ..++++++.|...--+. + |.=..++.+|+..+|++.+.|. +++++|+
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~lQ 73 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVL 73 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHH----HHHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHh
Confidence 344445555 35899998876654332 2 3345799999999999999887 4555554
No 370
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=51.03 E-value=21 Score=26.36 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRK 508 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkK 508 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|.........+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4778888888888876522 11356789999999999999988766554
No 371
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=50.87 E-value=36 Score=26.74 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+..
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3666777777777765421 1134678999999999999999998888888754
No 372
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=50.73 E-value=37 Score=27.57 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 480 RMKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 480 ~~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
.+.|+++||+.+|+|+.++..+..+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45999999999999999999877765
No 373
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=50.67 E-value=34 Score=26.65 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 515 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~ 515 (525)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|.....
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 566666777777765422 113467899999999999999998888888875543
No 374
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=50.14 E-value=22 Score=34.33 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|++.|-.||..-+..+ |.++|..|||+.+++++.+|..+..+
T Consensus 155 gLt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i~~~tvt~~v~r 197 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQN-KNIVLLKDLIETIHHKYPQTVRALNN 197 (250)
T ss_dssp SSCHHHHHHHHHHHTTT-TCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC-CCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 59999988887765433 33599999999999999999954443
No 375
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=50.02 E-value=7.6 Score=32.54 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
+|..|+|+.+|||..|+|..+..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 7999999999999999999887543
No 376
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=49.89 E-value=3.4 Score=36.83 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..|||+.+|||+.+|++++..
T Consensus 15 ltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 15 LTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999998753
No 377
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=49.70 E-value=35 Score=27.85 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
.+++.+..+|...|..+.. ......+||..+|++...|+.....-..|.|+...
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4788888888888865422 11346789999999999999999888888876543
No 378
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=49.57 E-value=38 Score=26.87 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhchh
Q 009803 462 LNPRERQVVRWRFGL---EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 518 (525)
Q Consensus 462 L~~rER~VL~lRygl---~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~~~~L 518 (525)
+++.+..+|.-.|.. +.. ......+||..+|+|...|..+......|.|.......+
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~~ 69 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPEL 69 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHHH
Confidence 678888899888876 311 113457899999999999999999999888875433333
No 379
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=49.44 E-value=38 Score=27.59 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=43.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHH
Q 009803 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 379 (525)
Q Consensus 300 ~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~ 379 (525)
.+.........+++||.+...+.--.--..|.-.-|..|..|...+ ++.+|..
T Consensus 12 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~---------------------------Rl~~A~~ 64 (108)
T 3oou_A 12 SYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRY---------------------------RVNYAKE 64 (108)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHH---------------------------HHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH---------------------------HHHHHHH
Confidence 3333444456889999888766555555555555566666655432 3344444
Q ss_pred HHHHHcCCCCCHHHHHHHcCCC
Q 009803 380 QLYSENGRHPNNEEVAEATGLS 401 (525)
Q Consensus 380 ~L~~~lgr~Pt~eEIA~~lgis 401 (525)
.|.. ..-++.+||..+|++
T Consensus 65 lL~~---~~~si~~IA~~~Gf~ 83 (108)
T 3oou_A 65 ELLQ---TKDNLTIIAGKSGYT 83 (108)
T ss_dssp HHHH---CCCCHHHHHHHTTCC
T ss_pred HHHc---CCCCHHHHHHHcCCC
Confidence 4432 134788899888874
No 380
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=49.20 E-value=42 Score=27.84 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHH-HHHhc--CCCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 460 DTLNPRERQVVR-WRFGL--EDGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 460 ~~L~~rER~VL~-lRygl--~~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
..|++.+-.|+. +.... -.|.+.++.+||+.+++++.+++..+
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l 57 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 57 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHH
Confidence 357777777776 44331 12345899999999999999998443
No 381
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=48.49 E-value=11 Score=36.34 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 009803 467 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 467 R~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
|-+=.|.+....+.++|+.|||+.+|+++.+|..++.
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~ 43 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMS 43 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344444444444679999999999999999995543
No 382
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=48.45 E-value=26 Score=32.80 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=31.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
-.-|++.||-.=..|+.. .|...+.+++|+.+|||+..|+..+.-
T Consensus 21 ~rplS~yErg~~y~r~L~-~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQ-NEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp --CCCHHHHHHHHHHHHH-TTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh-cCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 445777777766666543 334479999999999999999855443
No 383
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=48.33 E-value=11 Score=29.76 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..|+|+.+|||..++|..+.+
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHh
Confidence 89999999999999999998876
No 384
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=48.27 E-value=10 Score=37.08 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHH
Q 009803 478 DGRMKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 478 ~g~~~Tl~EIAe~LgIS~erVRqie 502 (525)
.+.++|+.|||+.+|+++.+|..++
T Consensus 42 ~~~~ltl~eia~~lgl~ksTv~RlL 66 (275)
T 3mq0_A 42 SPRDLTAAELTRFLDLPKSSAHGLL 66 (275)
T ss_dssp CSSCEEHHHHHHHHTCC--CHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3456999999999999999999544
No 385
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=48.25 E-value=11 Score=35.30 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 456 EKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 456 ~~aL~~L~-~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
..++..|. +-...||.+-. ++ |+|..||++.+|+|..+|.++ +++|.+
T Consensus 6 ~~ilkaL~~~~rl~IL~~L~--~~--~~s~~eLa~~l~is~stvs~h----Lk~Le~ 54 (202)
T 2p4w_A 6 NRLLDVLGNETRRRILFLLT--KR--PYFVSELSRELGVGQKAVLEH----LRILEE 54 (202)
T ss_dssp HHHHHHHHSHHHHHHHHHHH--HS--CEEHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH--hC--CCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 33444444 44445555432 22 499999999999999999954 455543
No 386
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=48.24 E-value=49 Score=30.97 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+|..++|+.+|||..+|++++.
T Consensus 44 itQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 44 IPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp CCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCChHHHHHHHh
Confidence 9999999999999999999975
No 387
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=48.18 E-value=19 Score=30.15 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR 510 (525)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-++||.
T Consensus 28 ~Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 48999999987754 4567889999999999 4677888877777666664
No 388
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=47.90 E-value=56 Score=27.72 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 340 TYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.|..+.+.+.+.+.+...-....++......+..+ ...+...|..+||+.+|++...+..++.
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 76 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVD 76 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHH
Confidence 45555555555555554333333332222222211 1223334999999999999999988874
No 389
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=47.87 E-value=12 Score=29.19 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|+.++|+.+|||+.+|+++++.
T Consensus 28 ~sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 28 MSMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 39999999999999999999874
No 390
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=47.46 E-value=40 Score=27.72 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=29.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHH
Q 009803 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345 (525)
Q Consensus 300 ~IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~w 345 (525)
.+.........+++||.+...+.--.--..|.-..|..|..|+..+
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~ 59 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLEL 59 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3334444556889999888777655555556555677676666543
No 391
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=47.44 E-value=13 Score=36.12 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqi 501 (525)
..|+.+||+..|||+.++...
T Consensus 140 ~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 140 NVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp GCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHh
Confidence 389999999999999999764
No 392
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.26 E-value=21 Score=27.83 Aligned_cols=51 Identities=12% Similarity=0.276 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|+.
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 344444555555544321 112457899999999999999999888888763
No 393
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=47.12 E-value=39 Score=25.61 Aligned_cols=52 Identities=8% Similarity=0.128 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 567777788888866532 1134678999999999999999988888877643
No 394
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=46.98 E-value=26 Score=30.74 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHhc-CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGL-EDG-RMKTLQEIGELMGVSRERIRQIESSAFR 507 (525)
Q Consensus 461 ~L~~rER~VL~lRygl-~~g-~~~Tl~EIAe~LgIS~erVRqie~RALk 507 (525)
.|++.|-.||..-+.. +.| ...|.++||+.+|+|...|.+++.+-++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5888887766554442 222 4479999999999999999866555443
No 395
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=46.92 E-value=26 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+.|+.+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3999999999999999999877766
No 396
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=46.80 E-value=34 Score=24.70 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKL 509 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKL 509 (525)
.+++.+..+|...|-.+.. ......+||..+|++...|+.....-..|.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 3567778888888765422 113567899999999999999887765553
No 397
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=46.43 E-value=15 Score=30.27 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=27.0
Q ss_pred HHHhcCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHH
Q 009803 457 KVLDTLNPRERQ-VVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIE 502 (525)
Q Consensus 457 ~aL~~L~~rER~-VL~lRygl~~g~~~Tl~EIAe~L-gIS~erVRqie 502 (525)
.+++.+..+-+. ||..-+ ++ ++++.||++.+ |+|+.+|.+++
T Consensus 17 ~~l~~l~~~~~~~IL~~L~--~~--~~~~~eL~~~l~gis~~~ls~~L 60 (107)
T 2fsw_A 17 KSMQIFAGKWTLLIIFQIN--RR--IIRYGELKRAIPGISEKMLIDEL 60 (107)
T ss_dssp HHHHHHTSSSHHHHHHHHT--TS--CEEHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHH--hC--CcCHHHHHHHcccCCHHHHHHHH
Confidence 344445554443 333322 22 49999999999 59999999544
No 398
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=46.09 E-value=9.2 Score=31.87 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=32.8
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHH
Q 009803 458 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIESS 504 (525)
Q Consensus 458 aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~Lg----IS~erVRqie~R 504 (525)
....|++.|..|+..-+-.+ +.|..||++.++ ++..+|..++.+
T Consensus 29 ~~~~LT~~e~~VL~~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~r 76 (99)
T 2k4b_A 29 VEFNVSNAELIVMRVIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGR 76 (99)
T ss_dssp --CCCCCSCSHHHHHHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHH
Confidence 34569999999988776533 499999999997 578999854443
No 399
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.08 E-value=1.2e+02 Score=25.09 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 386 gr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+...+..+||+.+|++...+..++.
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~ 74 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLD 74 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHH
Confidence 3456899999999999999988875
No 400
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=46.04 E-value=22 Score=29.50 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 009803 465 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 465 rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqi 501 (525)
-|+.+|..-+-..+ -...+.|+.||||+.+++..
T Consensus 58 ~Er~~I~~aL~~~~---gn~~~AA~~LGIsR~TL~rk 91 (98)
T 1eto_A 58 VEQPLLDMVMQYTL---GNQTRAALMMGINRGTLRKK 91 (98)
T ss_dssp HHHHHHHHHHHHTT---TCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHhCCCHHHHHHH
Confidence 35555544433333 37889999999999998844
No 401
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.95 E-value=27 Score=28.50 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+.|+.+||+.+|+|+.++..+.++.
T Consensus 18 ~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 18 PITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3999999999999999999877765
No 402
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=45.90 E-value=30 Score=31.21 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=31.5
Q ss_pred HHHhcCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHh
Q 009803 457 KVLDTLNPRERQ-VVRWRFGLEDGRMKTLQEIGELMG-VSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 457 ~aL~~L~~rER~-VL~lRygl~~g~~~Tl~EIAe~Lg-IS~erVRqie~RALkKLR~ 511 (525)
..+.-|....|. ||..-.+. .....|..||++.++ ||+.+|++. |+.|.+
T Consensus 21 ~~~~~l~~~tR~~IL~~Ll~~-p~~~~ta~eL~~~l~~lS~aTVyrh----L~~L~e 72 (151)
T 3u1d_A 21 ERRRFVLHETRLDVLHQILAQ-PDGVLSVEELLYRNPDETEANLRYH----VDELVD 72 (151)
T ss_dssp HHHHHHCCHHHHHHHHHHHHS-TTSCBCHHHHHHHCTTSCHHHHHHH----HHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHcC-CCCCCCHHHHHHhcCCCCHHHHHHH----HHHHHH
Confidence 334444444444 44444343 233579999999999 999999944 445543
No 403
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.82 E-value=40 Score=25.57 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 373 ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.+....+.+..-....-+..|||+.+|+|...|...+.
T Consensus 16 ~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~ 53 (79)
T 1x3u_A 16 TLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRA 53 (79)
T ss_dssp HHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33344444444456677999999999999999987764
No 404
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=45.77 E-value=1.2e+02 Score=24.81 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..-|.+|||+.+|+|...|...+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 567999999999999999998764
No 405
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=45.59 E-value=11 Score=35.27 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..|+|+.+|+|+.+|++++..
T Consensus 31 ~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 31 LSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp CCSHHHHHHHTSCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999999865
No 406
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.59 E-value=29 Score=27.00 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
..++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+.
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 3556666777777755422 124678999999999999999998887777653
No 407
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=45.49 E-value=33 Score=31.40 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 374 i~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+...-.++..+.|.+||..|||+.+|++...+...+.
T Consensus 10 il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 10 VLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 3344444556778999999999999999887777653
No 408
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=45.46 E-value=17 Score=31.49 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.7
Q ss_pred CCCHHHHHHHH-CCCHHHHHHHHH
Q 009803 481 MKTLQEIGELM-GVSRERIRQIES 503 (525)
Q Consensus 481 ~~Tl~EIAe~L-gIS~erVRqie~ 503 (525)
++++.||++.+ |||+.+|.+++.
T Consensus 48 ~~~~~eLa~~l~gis~~tls~~L~ 71 (131)
T 1yyv_A 48 THRFSDLRRXMGGVSEXMLAQSLQ 71 (131)
T ss_dssp CEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCHHHHHHHHH
Confidence 49999999999 799999995543
No 409
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=45.22 E-value=13 Score=33.05 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=30.7
Q ss_pred HHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 457 KVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 457 ~aL~~L~-~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.++..|. +.-..||.+-. + .++|..|||+.+|+|+.+|++. |++|++
T Consensus 50 ~~l~aL~~p~R~~IL~~L~--~--~~~t~~eLa~~lgls~stvs~h----L~~L~~ 97 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLT--S--GEQTVNNLAAHFPASRSAISQH----LRVLTE 97 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGG--G--CCEEHHHHHTTSSSCHHHHHHH----HHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH--h--CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3444444 44445555432 2 2499999999999999999954 455543
No 410
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=45.20 E-value=46 Score=25.84 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|....
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 455555666666654421 11346789999999999999999888888876543
No 411
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=45.14 E-value=54 Score=25.04 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHhc-CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 461 TLNPRERQVVRWRFGL-EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 461 ~L~~rER~VL~lRygl-~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+++.+..+|...|.. +.. ......+||..+|+|...|..+...-..|.|+..
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3677788888888864 321 1134679999999999999999988888887754
No 412
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=44.86 E-value=34 Score=27.85 Aligned_cols=37 Identities=3% Similarity=-0.001 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 374 i~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+.++..-+........+.++||+.+|+|+..+....+
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 43 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQ 43 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444555666667788999999999999999998865
No 413
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.65 E-value=30 Score=27.16 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 455555666666655421 11346789999999999999999888777765
No 414
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.31 E-value=31 Score=27.02 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|+..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 566777788777766422 1134678999999999999999988888877644
No 415
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=44.02 E-value=25 Score=29.28 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.3
Q ss_pred CC--HHHHHHHH-CCCHHHHHHHH
Q 009803 482 KT--LQEIGELM-GVSRERIRQIE 502 (525)
Q Consensus 482 ~T--l~EIAe~L-gIS~erVRqie 502 (525)
++ +.||++.+ |||..++.+++
T Consensus 41 ~~~~~~eL~~~l~gis~~~ls~~L 64 (111)
T 3df8_A 41 TRQNFNDIRSSIPGISSTILSRRI 64 (111)
T ss_dssp SCBCHHHHHHTSTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHccCCCHHHHHHHH
Confidence 56 99999999 99999998544
No 416
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=43.84 E-value=42 Score=26.96 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHcCCCHHHHHHHHh
Q 009803 376 EARKQLYSENGR-HPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 376 ka~~~L~~~lgr-~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
++..-+.+.... .++.++||+.+|+|+..+....+
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334444555565 78999999999999999998865
No 417
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=43.61 E-value=27 Score=26.54 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|+
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhh
Confidence 566677777777765422 11346789999999999999999888777765
No 418
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=43.51 E-value=57 Score=25.00 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHhc-CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 461 TLNPRERQVVRWRFGL-EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 461 ~L~~rER~VL~lRygl-~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+++.+..+|...|.. +.. .+....+||..+|+|...|..+...-..|.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 3567777888888863 421 1234678999999999999999988888887754
No 419
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=43.24 E-value=29 Score=33.58 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~R 504 (525)
.|++.|+.+|..-.-..+|.+.+..++|+.||+|+.++.....+
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 46777777776543333455689999999999999999865444
No 420
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=43.06 E-value=38 Score=32.47 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
+|..+||+.+|||..+|++++..
T Consensus 45 ltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 45 IPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHhC
Confidence 89999999999999999999973
No 421
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=42.74 E-value=46 Score=26.21 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
.+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4677777888888766522 113467899999999999999998888887763
No 422
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=42.66 E-value=66 Score=28.20 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 340 TYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.|..+.+.+.+.+.+...-....++......+..+ ...+...+..+||+.+|++...+..++.
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 90 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLD 90 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHH
Confidence 45555555666666655443333433222222211 1224456899999999999999988864
No 423
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=42.47 E-value=21 Score=29.08 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=21.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~R 504 (525)
++..++|+..|||+.++..|++.
T Consensus 33 ikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 33 MNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHTC
T ss_pred cCHHHHHHHcCCCHHHHHHHHcC
Confidence 89999999999999999988764
No 424
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=42.45 E-value=40 Score=28.52 Aligned_cols=71 Identities=8% Similarity=0.076 Sum_probs=39.0
Q ss_pred hhcCCcCCCchhhHHHHHHHHHHHHHHHhcc-cceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHH
Q 009803 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQS-RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406 (525)
Q Consensus 328 ekFDp~kG~rFsTYA~~wIRqaI~~~ir~~~-r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~ 406 (525)
.+|++.. +-.|..+++.+.+.+.+.+.- ....++......+..+ ...| ..+..+||+.+|++...+.
T Consensus 5 ~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tvs 72 (148)
T 3nrv_A 5 QKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAVS 72 (148)
T ss_dssp CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHHH
T ss_pred ccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHHH
Confidence 4455442 345666666666666655432 2223333222222222 1223 6789999999999999998
Q ss_pred HHHh
Q 009803 407 AVLL 410 (525)
Q Consensus 407 ~~l~ 410 (525)
.++.
T Consensus 73 ~~l~ 76 (148)
T 3nrv_A 73 RTVK 76 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 425
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.42 E-value=45 Score=26.88 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
..++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+.
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3566777777777765422 113567899999999999999998888777653
No 426
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=42.31 E-value=51 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
...+..+||+.+|++...+..++.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLR 69 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHH
Confidence 356899999999999999988874
No 427
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=41.81 E-value=21 Score=27.46 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=19.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie 502 (525)
.|+.+.|+.||||..+|++.+
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 489999999999999999886
No 428
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=41.52 E-value=41 Score=28.02 Aligned_cols=44 Identities=11% Similarity=-0.008 Sum_probs=26.4
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHHH
Q 009803 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345 (525)
Q Consensus 301 IA~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~w 345 (525)
+..........++||.+...+.--.--..|... |..|..|+..+
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~ 58 (120)
T 3mkl_A 15 VINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTEC 58 (120)
T ss_dssp HHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 333334446788998887666555444555544 66666665443
No 429
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=41.46 E-value=54 Score=26.91 Aligned_cols=54 Identities=13% Similarity=-0.019 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~----~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
.||+....||.-.|...-..| ..-.+||..+|+|...|......+..|.+..+.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 478888888888776531112 345689999999999999999999999987653
No 430
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=41.14 E-value=58 Score=31.02 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=24.6
Q ss_pred hHHHHHHhhcCCCCchHHhHHhhcCCHHHHHHH
Q 009803 247 GLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 279 (525)
Q Consensus 247 ~~~~~l~~~~g~~pt~~ewa~a~g~d~~~L~~~ 279 (525)
++..-+.......+++.++|..+|++...|.+.
T Consensus 7 ~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~ 39 (292)
T 1d5y_A 7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM 39 (292)
T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 344455566677889999999999998777665
No 431
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=40.47 E-value=44 Score=26.63 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGL---EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 461 ~L~~rER~VL~lRygl---~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
.+++.+..+|...|.. ... ......+||..+|++...|+.+......|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 5777788888888876 311 1134568999999999999999988877754
No 432
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.33 E-value=41 Score=25.73 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|+.
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 455666677766655422 113567899999999999999999888887763
No 433
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=40.02 E-value=22 Score=31.95 Aligned_cols=22 Identities=0% Similarity=0.081 Sum_probs=20.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 009803 483 TLQEIGELMGVSRERIRQIESS 504 (525)
Q Consensus 483 Tl~EIAe~LgIS~erVRqie~R 504 (525)
|..|+|+.+|||+.+|++++..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 434
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=39.90 E-value=31 Score=25.96 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++.+..+|.-.|..+.. ......+||..+|+|...|......-..|.|+
T Consensus 10 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhH
Confidence 567777888888766522 11346789999999999999998877766543
No 435
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=39.54 E-value=25 Score=30.79 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCC-CHHHHHHHHHHH
Q 009803 462 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGV-SRERIRQIESSA 505 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgI-S~erVRqie~RA 505 (525)
+++.-.+-|..+...| +|+.+|+...|| |+.||..++.+-
T Consensus 13 ~t~e~~e~I~~~i~~G----~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 13 YMPEVADDICSLLSSG----ESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp CCTTHHHHHHHHHHTT----CCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHCC----CcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 3333334455555555 999999999999 899999988764
No 436
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=39.41 E-value=2.5 Score=36.60 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 479 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 479 g~~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVM----RSYEYLQS 61 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4446 89999999999999999 78888865
No 437
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=39.26 E-value=6.3 Score=36.23 Aligned_cols=24 Identities=4% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+|..+||+.||||+.||..++...
T Consensus 159 ~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 159 IPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHh
Confidence 899999999999999999766543
No 438
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=39.19 E-value=6.3 Score=36.32 Aligned_cols=25 Identities=4% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
+|..+||+.||+|+.||..++.+.-
T Consensus 159 ~s~~~Ia~~l~vs~~T~yr~l~~~~ 183 (193)
T 3plo_X 159 IPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp -------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhhH
Confidence 8999999999999999987655433
No 439
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=39.06 E-value=71 Score=26.76 Aligned_cols=62 Identities=6% Similarity=-0.021 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 340 TYA~~wIRqaI~~~ir~~~r~iRiP~~~~~~~~ki~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.|..+.+.+.+.+.+........++......+..+. .. ...|..+||+.+|++...+..++.
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~-------~~--~~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 12 SFDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIE-------AN--EPISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHH-------HH--SSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-------Hc--CCcCHHHHHHHHCCCHhhHHHHHH
Confidence 344445555555555554433334333332232221 11 345889999999999999988874
No 440
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=39.03 E-value=53 Score=31.45 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIES 503 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~ 503 (525)
+.|..+||+.+|+++++|+..+.
T Consensus 178 ~~t~~~la~~~~l~~~~V~~~l~ 200 (232)
T 2qlz_A 178 RATVEELSDRLNLKEREVREKIS 200 (232)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHH
Confidence 39999999999999999995543
No 441
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=38.99 E-value=28 Score=26.80 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
.++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|+.-.
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 456666677776655421 11456789999999999999999988888776433
No 442
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.97 E-value=51 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.9
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhCC
Q 009803 389 PNNEEVAEATGLSMKRLHAVLLSP 412 (525)
Q Consensus 389 Pt~eEIA~~lgis~~~v~~~l~~~ 412 (525)
-+..+||+.+|+|...|..++...
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 478999999999999999988643
No 443
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=38.95 E-value=1.9e+02 Score=24.99 Aligned_cols=77 Identities=9% Similarity=-0.022 Sum_probs=56.1
Q ss_pred cCC-CCchHHhHHhhcCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh-hhhcCC
Q 009803 256 CGG-SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG-AEKFDA 332 (525)
Q Consensus 256 ~g~-~pt~~ewa~a~g~d~~~L~~~l~~g~~A~e~Lv~~nlrLV~~IA~~y~~~g~~~eDLIQEG~lGLirA-iekFDp 332 (525)
.|- ..|+.+.|..+|++...+-.-..+-..-+..++..+..-+..........+.+..+.+...+..++.. +...++
T Consensus 30 ~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (212)
T 3knw_A 30 KGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQSW 108 (212)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhccc
Confidence 464 57899999999999999998888777778888887777776666666555678888888777777766 554444
No 444
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=38.65 E-value=55 Score=26.11 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 5777888888888865422 11356789999999999999999888877775
No 445
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=38.61 E-value=28 Score=26.57 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|+
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 566667777777765422 11346789999999999999998887777665
No 446
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=38.45 E-value=1.2e+02 Score=26.15 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=21.5
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 385 NGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 385 lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.|...+..+||+.+|++...+..++.
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~ 68 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLD 68 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 35556778999999999999988874
No 447
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=38.14 E-value=1.3e+02 Score=31.27 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..-|.+|||+.+|+|.++|+.++.
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~ 402 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIEN 402 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 567999999999999999998753
No 448
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=38.13 E-value=36 Score=25.20 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 4677777888888866532 1134678999999999999998877665544
No 449
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=37.85 E-value=30 Score=35.18 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 009803 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 513 (525)
Q Consensus 480 ~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l 513 (525)
.+.|.+|||+..|||..|||+....-+..+-..+
T Consensus 291 ~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~ 324 (345)
T 4bbr_M 291 IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324 (345)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 3489999999999999999987776666655544
No 450
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=37.64 E-value=64 Score=26.98 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-C----CCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-G----VSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-g----IS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|+..|.++|.+.+ | .+..+|.+.+.+-++||..
T Consensus 36 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 90 (120)
T 2z9m_A 36 ELTHREFELFHYLS-KHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp CCCHHHHHHHHHHH-TTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCS
T ss_pred eCCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhc
Confidence 58999999988754 5568889999999876 2 5677888777777777653
No 451
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=37.55 E-value=12 Score=31.54 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSA 505 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RA 505 (525)
+|+.|.++.||||.+.|.+++...
T Consensus 51 lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 51 ITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp CCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999998765
No 452
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=37.49 E-value=29 Score=25.89 Aligned_cols=50 Identities=10% Similarity=0.130 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHh---cCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 461 TLNPRERQVVRWRFG---LEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 461 ~L~~rER~VL~lRyg---l~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
.+++.+..+|.-.|. .+.. ......+||..+|+|...|.........+.|
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 356777788888773 2211 1134678999999999999998877665543
No 453
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.36 E-value=45 Score=25.87 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
.++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+.
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 566666777777765422 113567899999999999999988777777653
No 454
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=37.35 E-value=36 Score=35.23 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 009803 451 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 510 (525)
Q Consensus 451 ~~~~L~~aL~--~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR 510 (525)
+...+...+. .|+..|-.||..-+.. .+.++|..|||+.+++++.+|. +.+++|-
T Consensus 389 ~~~~~~~~~~~~~lt~~q~~vl~~l~~~-~~~~~~~~~l~~~~~~~~~~~t----~~~~~le 445 (487)
T 1hsj_A 389 VKKFFRDTKKKFNLNYEEIYILNHILRS-ESNEISSKEIAKCSEFKPYYLT----KALQKLK 445 (487)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHTC-SCSEEEHHHHHHSSCCCHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 3444555554 4899998888776644 1234999999999999999998 4555554
No 455
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=37.25 E-value=1e+02 Score=26.32 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
...+..+||+.+|++...|..++.
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 357899999999999999988874
No 456
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=36.85 E-value=43 Score=34.09 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 009803 467 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507 (525)
Q Consensus 467 R~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALk 507 (525)
+.||.+-+-. .+.|..|||+.+|+|+.||.++..+-+.
T Consensus 19 ~~il~~l~~~---~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQL---GPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHSS---CSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4466655432 2599999999999999999977655443
No 457
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=36.38 E-value=42 Score=25.83 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 14 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 456667777777765422 113467899999999999999998888887764
No 458
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=36.32 E-value=74 Score=26.37 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=20.6
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Q 009803 388 HPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 388 ~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..+..+||+.+|++...+..++.
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~ 72 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQ 72 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHH
Confidence 57999999999999999988875
No 459
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.17 E-value=52 Score=24.81 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..-|..|||+.+|+|...|...+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 678999999999999999988653
No 460
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=35.81 E-value=18 Score=32.45 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
.+|..|+|+.+|||..++|..+...+
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 38999999999999999999987754
No 461
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.03 E-value=30 Score=26.42 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 566677777777755421 11356789999999999999998877766554
No 462
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=34.87 E-value=8.1 Score=37.15 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=0.0
Q ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 481 MK-TLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 481 ~~-Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+ |..|+|+.||||+.+|| +|++.|..
T Consensus 39 ~lPse~~La~~~~vSr~tvr----~Al~~L~~ 66 (247)
T 2ra5_A 39 LLGNEIELAARLGLSRPTVR----QAIQSLVD 66 (247)
T ss_dssp --------------------------------
T ss_pred CCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 36 89999999999999999 67777765
No 463
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.87 E-value=1.6e+02 Score=23.02 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=21.6
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 385 NGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 385 lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.-..-+..|||+.+|+|...|...+.
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35567999999999999999987654
No 464
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=34.86 E-value=34 Score=27.00 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+
T Consensus 29 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 29 FSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 556666677777755422 11346789999999999999998877766554
No 465
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.79 E-value=60 Score=24.08 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..-|..|||+.+|+|...|...+.
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 578999999999999999988764
No 466
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=34.69 E-value=56 Score=26.59 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~ 512 (525)
.+++.+..+|...|-.... ......+||..+|++...|+.+...-..|.|+.
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 4677777888877765422 113567899999999999999999888888763
No 467
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=34.58 E-value=69 Score=27.61 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=20.2
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Q 009803 388 HPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 388 ~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..+..+||+.+|++...+..++.
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~ 89 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVD 89 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 56889999999999999988864
No 468
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=34.45 E-value=20 Score=29.57 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+-. ...|...|.++|.+.+ .++..+|++.+.+-.+||..
T Consensus 29 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 83 (109)
T 2hqn_A 29 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp ECCCSTHHHHHHHH-HHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 48899998887654 3457789999999998 46778888877777777754
No 469
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=34.16 E-value=65 Score=26.74 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=35.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHHHHh
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGE-LMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe-~LgIS~erVRqie~RALkKLR~ 511 (525)
..|++-|-.||..-+-.+ +.|..+||+ .+++.+.+|. |.++.|.+
T Consensus 12 ~~L~~~QfsiL~~L~~~~---~~t~~~Lae~~l~~drstvs----rnl~~L~r 57 (95)
T 1bja_A 12 DVLNEKTATILITIAKKD---FITAAEVREVHPDLGNAVVN----SNIGVLIK 57 (95)
T ss_dssp TSSCHHHHHHHHHHHHST---TBCHHHHHHTCTTSCHHHHH----HHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHCC---CCCHHHHHHHHhcccHHHHH----HHHHHHHH
Confidence 468888888877665443 489999999 9999999998 66666643
No 470
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.93 E-value=16 Score=32.39 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 482 KTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 482 ~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
+|..|+|+.+|||..++|-.+...+
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye~~Gl 41 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYDKQGL 41 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHTTC
T ss_pred eeHHHHHHHHCcCHHHHHHHHHCCC
Confidence 7899999999999999999887654
No 471
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=33.80 E-value=53 Score=26.01 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=20.1
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Q 009803 388 HPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 388 ~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.-+..|||+.+|+|+..|+..+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999998874
No 472
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=33.54 E-value=50 Score=33.97 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 009803 467 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 507 (525)
Q Consensus 467 R~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALk 507 (525)
+.||.+-+-.+ +.|..|||+.+|+|+.||.++..+-++
T Consensus 42 ~~il~~l~~~~---~~sr~ela~~~gls~~tv~~~v~~L~~ 79 (429)
T 1z05_A 42 GRVYKLIDQKG---PISRIDLSKESELAPASITKITRELID 79 (429)
T ss_dssp HHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44666554332 499999999999999999977655443
No 473
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=33.18 E-value=42 Score=32.92 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHC-------CCHHHHHHHHHHH
Q 009803 466 ERQVVRWRFGLEDGRMKTLQEIGELMG-------VSRERIRQIESSA 505 (525)
Q Consensus 466 ER~VL~lRygl~~g~~~Tl~EIAe~Lg-------IS~erVRqie~RA 505 (525)
.|.+|.+.|-.| +|..+|++.|+ +|+.+|..+..+-
T Consensus 11 ~R~~i~~~~~~G----~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCFHLK----KTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHHTT----CCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 455666666655 89999999987 9999999887763
No 474
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=33.08 E-value=48 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.6
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Q 009803 388 HPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 388 ~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
.++..|||+.+|+|...|...+.
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 57999999999999999988875
No 475
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=32.57 E-value=39 Score=28.94 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhC
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~~ 411 (525)
+-|+..+||+.+|+|...|++++..
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~ 58 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKE 58 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3589999999999999999998753
No 476
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=32.32 E-value=65 Score=26.08 Aligned_cols=53 Identities=6% Similarity=0.040 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
+++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+...
T Consensus 24 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 24 FTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 445555666666655421 11346789999999999999999888888887654
No 477
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.00 E-value=63 Score=25.40 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..-|..|||+.+|+|...|...+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 678999999999999999988764
No 478
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=31.87 E-value=61 Score=27.31 Aligned_cols=42 Identities=10% Similarity=0.160 Sum_probs=25.0
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHhhhhcCCcCCCchhhHHHH
Q 009803 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344 (525)
Q Consensus 303 ~~y~~~g~~~eDLIQEG~lGLirAiekFDp~kG~rFsTYA~~ 344 (525)
.........++||.....+.--.--..|.-..|..|..|+..
T Consensus 21 ~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~ 62 (129)
T 1bl0_A 21 EDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS 62 (129)
T ss_dssp HTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHH
Confidence 333344588899988866655444455554456666655543
No 479
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=31.41 E-value=41 Score=29.26 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=30.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHH
Q 009803 455 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIE 502 (525)
Q Consensus 455 L~~aL~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-gIS~erVRqie 502 (525)
+..+++.|..+=+-.| ++...+| ++++.||++.+ |||..++.+.+
T Consensus 16 i~~~l~~lg~kW~l~I-L~~L~~g--~~rf~eL~~~l~gIs~~~Ls~~L 61 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGIL-FYHMIDG--KKRFNEFRRICPSITQRMLTLQL 61 (131)
T ss_dssp HHHHHHHHCSSSHHHH-HHHHTTS--CBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHH-HHHHhcC--CcCHHHHHHHhcccCHHHHHHHH
Confidence 4555666766644333 2222232 49999999999 99999988544
No 480
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.31 E-value=86 Score=23.75 Aligned_cols=40 Identities=20% Similarity=0.500 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 466 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 466 ER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
|.+++.+--. .|--.-++.+++.+||+++-|- .+|++|.+
T Consensus 12 e~~lL~yIr~--sGGildI~~~a~kygV~kdeV~----~~LrrLe~ 51 (59)
T 2xvc_A 12 ERELLDYIVN--NGGFLDIEHFSKVYGVEKQEVV----KLLEALKN 51 (59)
T ss_dssp HHHHHHHHHH--TTSEEEHHHHHHHHCCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHH--cCCEEeHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 3345544333 3334899999999999999997 56666643
No 481
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=31.29 E-value=39 Score=27.29 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.1
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Q 009803 389 PNNEEVAEATGLSMKRLHAVLLS 411 (525)
Q Consensus 389 Pt~eEIA~~lgis~~~v~~~l~~ 411 (525)
-|..++|+.+|+|...|..+..-
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46788999999999888888765
No 482
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=31.23 E-value=1.5e+02 Score=25.38 Aligned_cols=47 Identities=6% Similarity=0.028 Sum_probs=36.6
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 009803 460 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 514 (525)
Q Consensus 460 ~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~~l~ 514 (525)
..=+++=..-|+.+|..| +|-+++++..||+.+-.. +++++|.....
T Consensus 43 ~IrSekII~ALrdyLV~G----~srkeaCe~~gV~~syfS----~~L~rL~~v~~ 89 (111)
T 3m8j_A 43 SIHSDRVILAMKDYLVSG----HSRKDVCEKYQMNNGYFS----TTLGRLTRLNV 89 (111)
T ss_dssp CCCCHHHHHHHHHHHTTC----CCHHHHHHHTTCCHHHHH----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC----CcHHHHHHHhCCCHHHHH----HHHHHHHHHHH
Confidence 344566666777777766 999999999999988766 78888877554
No 483
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.10 E-value=69 Score=25.27 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 009803 465 RERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAF 506 (525)
Q Consensus 465 rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RAL 506 (525)
.++.+|.-+|-.+-. ....+..||+.+|++++.|+.+...-.
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 456788888877522 124578899999999999999887644
No 484
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=30.99 E-value=41 Score=29.05 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 009803 470 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 470 L~lRygl~~g~~~Tl~EIAe~LgIS~erVRqi 501 (525)
+....|.++ .|+.+||+..|||+.++...
T Consensus 14 l~~~~G~~~---~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 14 LFIKNGYNA---TTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp HHHHHTTTT---CCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHcCCcc---CCHHHHHHHhCCCchhHHHh
No 485
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.91 E-value=21 Score=28.07 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=21.8
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 385 NGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 385 lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
....-+..|||+.+|+|...|...+.
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34567999999999999999987764
No 486
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.74 E-value=1.5e+02 Score=25.61 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~ 511 (525)
++++.-+.||.+-... +.++|..||.+.+ +||..||. |.|+.|.+
T Consensus 19 r~T~qR~~Il~~L~~~--~~~~sa~ei~~~l~~~~~~is~aTVY----R~L~~L~e 68 (145)
T 2fe3_A 19 RITPQRHAILEYLVNS--MAHPTADDIYKALEGKFPNMSVATVY----NNLRVFRE 68 (145)
T ss_dssp CCCHHHHHHHHHHHHC--SSCCCHHHHHHHHGGGCTTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhCCCCChhhHH----HHHHHHHH
Confidence 5787777777766543 3569999999999 89999998 77777765
No 487
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=30.63 E-value=76 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 387 r~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
..-|..|||+.+|+|...|...+.
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 456889999999999999998875
No 488
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=30.62 E-value=44 Score=31.98 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 374 i~ka~~~L~~~lgr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
+....+.|. .|+.|+..+||..+|+++++|..+|.
T Consensus 24 ~~~llr~la--~Grpv~~~~LA~~~g~~~~~v~~~L~ 58 (220)
T 3f2g_A 24 LVPLLRELA--KGRPVSRTTLAGILDWPAERVAAVLE 58 (220)
T ss_dssp HHHHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCCHHHHHHHhCcCHHHHHHHHH
No 489
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.56 E-value=44 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHh
Q 009803 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (525)
Q Consensus 386 gr~Pt~eEIA~~lgis~~~v~~~l~ 410 (525)
...-+..|||+.+|+|+..|...+.
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3455889999999999999988764
No 490
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=30.47 E-value=40 Score=29.36 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 009803 473 RFGLEDGRMKTLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 473 Rygl~~g~~~Tl~EIAe~LgIS~erVRqi 501 (525)
..|.+ ..|+.+||+..|||+.++...
T Consensus 22 ~~G~~---~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 22 EKGYD---GTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHCTT---TCCHHHHHHHTTCCHHHHHHH
T ss_pred HcCcc---cCCHHHHHHHhCCChHHHHHH
Confidence 34544 399999999999999999864
No 491
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.26 E-value=49 Score=25.00 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.0
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHhC
Q 009803 385 NGRHPNNEEVAEATGLSMKRLHAVLLS 411 (525)
Q Consensus 385 lgr~Pt~eEIA~~lgis~~~v~~~l~~ 411 (525)
.+..-+..|||+.+|+|...|..++..
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344558899999999999999888753
No 492
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.20 E-value=49 Score=25.57 Aligned_cols=51 Identities=6% Similarity=0.060 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
.+++.+..+|.-.|..+.. ......+||..+|+|...|+.+...-..|.|+
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr 61 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhh
Confidence 3566666777777755422 11356789999999999999998777666654
No 493
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.09 E-value=38 Score=25.80 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Q 009803 389 PNNEEVAEATGLSMKRLHAVLLS 411 (525)
Q Consensus 389 Pt~eEIA~~lgis~~~v~~~l~~ 411 (525)
+|..+||+.+|+|...|..++.-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999863
No 494
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=30.03 E-value=47 Score=28.96 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQIE 502 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqie 502 (525)
..|+++||+..|||+.++....
T Consensus 23 ~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 23 ATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHc
Confidence 3899999999999999997653
No 495
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=29.83 E-value=63 Score=27.88 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-C----CCHHHHHHHHHHHHHHHHh
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-G----VSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-g----IS~erVRqie~RALkKLR~ 511 (525)
.|+++|..+|.+- ....|++.|.++|.+.+ | .+..+|.+.+.+-.+||..
T Consensus 60 ~Lt~~E~~LL~~L-~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 114 (133)
T 3q9v_A 60 RLSPKEFDILALL-IRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 114 (133)
T ss_dssp CCCHHHHHHHHHH-TTSTTCEEEHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHH-HHCCCceEcHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc
Confidence 5899999998774 45678889999999887 2 4566788777777777654
No 496
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=29.83 E-value=62 Score=28.60 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 009803 462 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 511 (525)
Q Consensus 462 L~~rER~VL~lRygl~~g-~~~Tl~EIAe~LgIS~erVRqie~RALkKLR~ 511 (525)
+++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+
T Consensus 100 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 100 FTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 566677777777765421 11346789999999999999999888877664
No 497
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.81 E-value=1.1e+02 Score=26.07 Aligned_cols=47 Identities=4% Similarity=0.114 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHhH
Q 009803 461 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKNK 512 (525)
Q Consensus 461 ~L~~rER~VL~lRygl~~g~~~Tl~EIAe~L-----gIS~erVRqie~RALkKLR~~ 512 (525)
++++.-+.||.+-... ++.++|..||.+.+ +||..||. |.|+.|.+.
T Consensus 15 r~T~qR~~Il~~L~~~-~~~~~sa~ei~~~l~~~~~~is~aTVY----R~L~~L~e~ 66 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSA-EQRHMSAEDVYKALMEAGEDVGLATVY----RVLTQFEAA 66 (136)
T ss_dssp CCCHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCCCHHHHH----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-CCCCCCHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHC
Confidence 5777766777665432 22579999999999 89999998 777777653
No 498
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.66 E-value=70 Score=26.48 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=35.1
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 009803 459 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 509 (525)
Q Consensus 459 L~~L~~rER~VL~lRygl~~g~~~Tl~EIAe~LgIS~erVRqie~RALkKL 509 (525)
+..|++.|+.|+.+-.-- |.+..+.++|...+|++..+|. +++++|
T Consensus 32 ~~~Lt~~E~lVy~~I~~a-Gn~GIw~kdL~~~tnL~~~~vt----kiLK~L 77 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEIN----KILKNL 77 (95)
T ss_dssp CCSCSHHHHHHHHHHHHH-TTSCEEHHHHHHHHTCCHHHHH----HHHHHH
T ss_pred hcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHHH----HHHHHH
Confidence 357888888888876543 2344999999999999998877 556665
No 499
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=29.48 E-value=48 Score=29.12 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q 009803 481 MKTLQEIGELMGVSRERIRQI 501 (525)
Q Consensus 481 ~~Tl~EIAe~LgIS~erVRqi 501 (525)
..|+.+||+..|||+.++...
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHH
Confidence 399999999999999999864
No 500
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=29.40 E-value=88 Score=28.36 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHHHHcCCCCCHHHHHHHcCCC-HHHHHHHHh
Q 009803 379 KQLYSENGRHPNNEEVAEATGLS-MKRLHAVLL 410 (525)
Q Consensus 379 ~~L~~~lgr~Pt~eEIA~~lgis-~~~v~~~l~ 410 (525)
+.+..+.|..||..|||+.+|++ ...|..++.
T Consensus 16 ~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 16 RDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 34445568889999999999999 887777653
Done!