BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009804
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 218 bits (556), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 212/409 (51%), Gaps = 53/409 (12%)
Query: 141 AGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYA 200
A R +++F E IVTCGG+CPGLN VIR I + +Y VKRV+G GY G
Sbjct: 85 AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 201 KNT---IALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 257
K + I L V +IH GGT+LG+SRG D ++VD+++ G+N ++ +GGDGTQ+G
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 258 ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFI------------AMYA------- 298
A VI +E +RRG+ + V G+PKTIDND+ T+ A YA
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 299 -----TLASRD--------------VDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVI 339
L RD + CL+PE+P + + +E R + VI
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVI 321
Query: 340 VIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHF-AKEKKMP-INLKYID 397
++AEG GQD R + DASGNK L D+G+ L++K+K A + + P +KYID
Sbjct: 322 IVAEGFGQDWG----RGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYID 377
Query: 398 PTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHV 457
P+YMIRA P +A+D ++C LA VH AMAG TG + + +P + +
Sbjct: 378 PSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVL 437
Query: 458 VITDRMWARLLSST-NQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEEL 505
+ ++W ++ T + S + +E ++E E + + N D+ EEL
Sbjct: 438 DLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINR--NRDRLHEEL 484
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 108/249 (43%), Gaps = 64/249 (25%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
++T GG PG+N IR +V Y +GV+ V G+ GY G A N L V DI R
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIY-HGVE-VYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 218 GGTVLGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
GGT+L T+R K ++ ++ GI + +IGGDG+ +GA + E G
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH----GFPC 119
Query: 273 VVAGIPKTIDNDIPVPLL---------------------------TWF----------IA 295
V G+P TIDNDIP TW IA
Sbjct: 120 V--GVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTWVIEVMGRHAGDIA 177
Query: 296 MYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLK---ENG--HMVIVIAEGAGQDL- 349
+Y+ LA + LIPE+ + + + RLK E G H +I++AEG G +
Sbjct: 178 LYSGLAG-GAETILIPEADYDM-------NDVIARLKRGHERGKKHSIIIVAEGVGSGVD 229
Query: 350 LAESIRSAT 358
I+ AT
Sbjct: 230 FGRQIQEAT 238
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
++T GG PG+N IR +V Y +GV+ V G+ GY G A N L V DI R
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIY-HGVE-VYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 218 GGTVLGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
GGT+L T+R K ++ ++ GI + +IGGDG+ +GA + E G
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH----GFPC 119
Query: 273 VVAGIPKTIDNDIP 286
V G+P TIDNDIP
Sbjct: 120 V--GVPGTIDNDIP 131
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
++T GG PG+N IR +V Y +GV+ V G+ GY G A N L V DI R
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIY-HGVE-VYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 218 GGTVLGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
GGT+L T+R K ++ ++ GI + +IGGDG+ +GA + E G
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH----GFPC 119
Query: 273 VVAGIPKTIDNDIP 286
V G+P TIDNDIP
Sbjct: 120 V--GVPGTIDNDIP 131
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
++T GG PG+N IR +V S G++ V+GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVVRSAL-TEGLE-VMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 218 GGTVLGTS-----RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
GGT LG++ R + + +++++ RGI+ + +IGGDG+ GA + E +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------MGF 118
Query: 273 VVAGIPKTIDNDI 285
G+P TIDNDI
Sbjct: 119 PCIGLPGTIDNDI 131
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 134/347 (38%), Gaps = 93/347 (26%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
++T GG PG+N +R +V Y + V+ V GI GY G + L V DI R
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIY-HDVE-VYGIYNGYAGLISGKIEKLELGSVGDIIHR 63
Query: 218 GGTVLGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
GGT L T+R K + +++ GI + +IGGDG+ GA + E G
Sbjct: 64 GGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTE----HGFPC 119
Query: 273 VVAGIPKTIDNDIPVPLLTWF-------------------------------------IA 295
V G+P TIDNDIP T IA
Sbjct: 120 V--GVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIA 177
Query: 296 MYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLK---ENG--HMVIVIAEGAGQDLL 350
++A LA + LIPE+ + + I RLK E G H +I++AEG G
Sbjct: 178 LWAGLAG-GAESILIPEADYDM-------HEIIARLKRGHERGKKHSIIIVAEGVGS--- 226
Query: 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNAS 410
G+ ++I++ E ++ + L +I R +A+
Sbjct: 227 ---------------------GVEFGKRIEEETNLETRVSV-LGHIQ-----RGGSPSAA 259
Query: 411 DNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHV 457
D V + L V + G G G+ N + I+E +H V
Sbjct: 260 DRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTV 306
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 128/345 (37%), Gaps = 93/345 (26%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
I+T GG PG+N +R V + G++ V GI G+ G A + L + V +
Sbjct: 6 ILTSGGDAPGMNAAVRA-VTRVAIANGLE-VFGIRYGFAGLVAGDIFPLESEDVAHLINV 63
Query: 218 GGTVLGTSR---GGHDTSKI--VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
GT L ++R + ++ ++ ++ GI+ V +IGGDG+ GA ++ R G
Sbjct: 64 SGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL----QLTRHGFNS 119
Query: 273 VVAGIPKTIDNDIPVPLLT------WFIAMYATLASRD---------------------- 304
+ G+P TIDNDIP T AM A RD
Sbjct: 120 I--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHRVFIVNVMGRNCGDIA 177
Query: 305 --------VDCCLIPESPFYLEGHGGLFEYIETRLK---ENG--HMVIVIAEGA-GQDLL 350
D +IPE P+ + E I RLK E+G H ++V+AEG D
Sbjct: 178 MRVGVACGADAIVIPERPYDV-------EEIANRLKQAQESGKDHGLVVVAEGVMTADQF 230
Query: 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNAS 410
++ D N L +M R S
Sbjct: 231 MAELKKYGDFDVRANVL-------------------------------GHMQRGGTPTVS 259
Query: 411 DNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQH 455
D V + L VH + G G G+ NG+ T + ++ H
Sbjct: 260 DRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESH 304
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
I+ GG PG + VI + ++ ++ G GG G + I LT +N
Sbjct: 77 IILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNT 136
Query: 218 GG-TVLGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
GG ++ + R +T +K + ++ +N + IIGGD + A+++ E ++ G +
Sbjct: 137 GGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENI 196
Query: 273 VVAGIPKTIDNDI 285
V G+PKTID D+
Sbjct: 197 QVIGVPKTIDADL 209
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 145 QKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTI 204
++V E + I+T GG PG+N +R + + + YG K V GY G +
Sbjct: 202 EQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRAGIF-YGCK-VYACYEGYTGLVKGGDM 259
Query: 205 --ALTPKGVNDIHKRGGTVLGTSRGGHDTSK-----IVDSIQDRGINQVYIIGGDGTQKG 257
L + V + GGT++GT+R + ++ GI+ + + GGDG+ G
Sbjct: 260 LKELQWQDVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTG 319
Query: 258 ASVIYEE 264
A + +E
Sbjct: 320 ADLFRKE 326
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 150 ESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTI-ALTP 208
ES + I+ G LN R V +L + RV I G+ G + L
Sbjct: 595 ESSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNW 652
Query: 209 KGVNDIHKRGGTVLGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVR 266
V D H GG+ +GT+R D + Q + + IIGG + + +YE
Sbjct: 653 IDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDA 709
Query: 267 RRG----LKVVVAGIPKTIDNDIP 286
R + + +P T+ N++P
Sbjct: 710 ARAQYPIFNIPMCCLPATVSNNVP 733
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFY--AKNTIALTPKGVNDIH 215
++T GG G+N +R +V ++ RV + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVVR--VGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 216 KRGGTVLGTSRGG-----HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEE 264
+ GGTV+G++R + ++ RGI + +IGGDG+ GA E
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSE 131
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHK- 216
++T GG PG+N +R +V + Y G K V I GY G + +D+
Sbjct: 186 VMTSGGDSPGMNPFVRAVVRAGIYK-GCK-VFCIHEGYEGLVRGGEKYIKETQWHDVRGW 243
Query: 217 --RGGTVLGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGASVIYEE 264
GGT +GT+R K ++ D GI+ + + GGDG+ GA E
Sbjct: 244 LVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSE 298
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 157 CIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFY--AKNTIALTPKGVNDI 214
++T GG PG+N +R +V + + +G V + GY G K + + V
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIH-FGCD-VFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 215 HKRGGTVLGTSRG-----GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEE 264
GGT++GT+R + ++ +GI+ + + GGDG+ GA + E
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHE 121
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 93/252 (36%), Gaps = 57/252 (22%)
Query: 225 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND 284
S + ++++ + I + GG +Q A + + R G + G+PKT+DND
Sbjct: 87 SENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLADRMGYPITCIGVPKTVDND 146
Query: 285 IPVP-------LLTWFIAMYATLASRDV-DCC---------------------------- 308
+P + +IA AS D+ C
Sbjct: 147 LPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGRHAGWIAAAGGLAGQ 206
Query: 309 ---------LIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQ 359
L PE PF E E ++ +++ G+ V+V +EGA Q + A
Sbjct: 207 SEGEPPHVILFPEIPFNRE---KFLERVDQCVRDYGYCVVVASEGA-QYEDGRFVADAGA 262
Query: 360 QDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVP--SNASDNVYCTL 417
+DA G+ L V L+ +K + + Y+ RA ++A+D
Sbjct: 263 KDAFGHTQLGGVAPALANMVKQALGHKYHWAV------ADYLQRAARHIASATDVEQAYA 316
Query: 418 LAQSCVHGAMAG 429
+ ++ V A+AG
Sbjct: 317 VGKAAVEMALAG 328
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 20/121 (16%)
Query: 157 CIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIH- 215
++T GG PG+N+ +R IV S ++ R + GY G + P+ + + H
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRSA--IFKGCRAFVVMEGYEGL-----VRGGPEYIKEFHW 59
Query: 216 -------KRGGTVLGTSRGGHDTSKI-----VDSIQDRGINQVYIIGGDGTQKGASVIYE 263
GGT +GT+R + + + G++ + + GGDG+ GA +
Sbjct: 60 EDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRS 119
Query: 264 E 264
E
Sbjct: 120 E 120
>pdb|2EEZ|A Chain A, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|C Chain C, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|D Chain D, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|E Chain E, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|F Chain F, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|G Chain G, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
Length = 369
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 201 KNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDS 237
+N +ALTP GV + +RG TVL RG + S + D+
Sbjct: 13 ENRVALTPGGVESLVRRGHTVL-VERGAGEGSGLSDA 48
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286
HD DS+ DR ++Q+ + G AS + E+ L+ +G T+ DIP
Sbjct: 492 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 549
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286
HD DS+ DR ++Q+ + G AS + E+ L+ +G T+ DIP
Sbjct: 491 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 548
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286
HD DS+ DR ++Q+ + G AS + E+ L+ +G T+ DIP
Sbjct: 492 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 549
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286
HD DS+ DR ++Q+ + G AS + E+ L+ +G T+ DIP
Sbjct: 491 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 548
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 399 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 445
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 399 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 445
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 399 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 445
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286
HD DS+ DR ++Q+ + G AS + E+ L+ +G T+ DIP
Sbjct: 203 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 260
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 399 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 445
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286
HD DS+ DR ++Q+ + G AS + E+ L+ +G T+ DIP
Sbjct: 199 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 256
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 411 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 457
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 411 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 457
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 411 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 457
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 411 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 457
>pdb|2F6K|A Chain A, Crystal Structure Of Amidohydrorolase Ii; Northeast
Structural Genomics Target Lpr24
pdb|2F6K|B Chain B, Crystal Structure Of Amidohydrorolase Ii; Northeast
Structural Genomics Target Lpr24
Length = 307
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 261 IYEEVRRRGLKVVV-----AGIPKTIDNDIPVPLLTWF 293
+Y+E+ R V + A +PK +D D+PVPLL +F
Sbjct: 140 VYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLGFF 177
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK 446
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + +E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCEERK 446
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 359 QQDASGNKLLQDVG-------LWLSQKIKDHFAKEKKMPIN-LKYIDPTYMIRAVPSNAS 410
QQ S + LLQ+V L L+ + +H P++ L I +++ + + S
Sbjct: 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEH----GNTPLHWLTSIANLELVKHLVKHGS 155
Query: 411 DNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQ------HHVVITDRM 463
+ +Y + +SC+ A+ Y SG Y+ I+E HH++IT M
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 214
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286
HD DS+ DR ++Q + G AS + E+ L+ +G T+ DIP
Sbjct: 199 HDVVAPTDSLTDRTLDQXSTVTRPGVAXXASSLAVELXTSLLQTKYSGSETTVLGDIP 256
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSERK 446
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSERK 446
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 345 AGQDLLAESI---RSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
AG+DL+A+ + +S++ +DA L + LWL +KI + E+K
Sbjct: 400 AGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSERK 446
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 194 GYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 253
G+ G ++ + + N++ R V+GT RG + + V G ++ GG
Sbjct: 277 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 332
Query: 254 TQKGASVIYEEVRRRG 269
Q GA+V++E VR G
Sbjct: 333 PQSGAAVVHEIVRSFG 348
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 194 GYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 253
G+ G ++ + + N++ R V+GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 254 TQKGASVIYEEVRRRG 269
Q GA+V++E VR G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 194 GYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 253
G+ G ++ + + N++ R V+GT RG + + V G ++ GG
Sbjct: 289 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 344
Query: 254 TQKGASVIYEEVRRRG 269
Q GA+V++E VR G
Sbjct: 345 PQSGAAVVHEIVRSFG 360
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 194 GYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 253
G+ G ++ + + N++ R V+GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 254 TQKGASVIYEEVRRRG 269
Q GA+V++E VR G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 194 GYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 253
G+ G ++ + + N++ R V+GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 254 TQKGASVIYEEVRRRG 269
Q GA+V++E VR G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 194 GYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 253
G+ G ++ + + N++ R V+GT RG + + V G ++ GG
Sbjct: 321 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 376
Query: 254 TQKGASVIYEEVRRRG 269
Q GA+V++E VR G
Sbjct: 377 PQSGAAVVHEIVRSFG 392
>pdb|1VKY|A Chain A, Crystal Structure Of S-Adenosylmethionine Trna
Ribosyltransferase (Tm0574) From Thermotoga Maritima At
2.00 A Resolution
pdb|1VKY|B Chain B, Crystal Structure Of S-Adenosylmethionine Trna
Ribosyltransferase (Tm0574) From Thermotoga Maritima At
2.00 A Resolution
Length = 347
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 15/175 (8%)
Query: 199 YAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGA 258
Y KN + L + K G+V + G H T ++++ ++ +G+ ++ G
Sbjct: 161 YIKNEVPLE-RYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFR 219
Query: 259 SVIYEEVRRRGLKVVVAGIPK-TIDNDIPVPLLTWFIAMYATLASRDVDC-CLIPESPFY 316
V EEV + + +PK T+ I T R ++ +PE Y
Sbjct: 220 PVKVEEVEKHKMHEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIARLPEQEEY 279
Query: 317 LEGHGGLFEY--IETRLKE----NGH-----MVIVIAEGAGQDLLAESIRSATQQ 360
+ G LF Y E +L + N H +++++A AG+D + E+ R A ++
Sbjct: 280 V-GKTDLFIYPPFEFKLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKR 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,855,368
Number of Sequences: 62578
Number of extensions: 715870
Number of successful extensions: 1852
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1800
Number of HSP's gapped (non-prelim): 62
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)