Query 009804
Match_columns 525
No_of_seqs 323 out of 1443
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 17:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 1E-112 3E-117 909.6 41.7 419 68-486 2-458 (484)
2 PRK06830 diphosphate--fructose 100.0 3E-100 7E-105 810.3 38.9 379 95-479 17-442 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 3.5E-98 8E-103 798.4 38.7 393 81-481 3-448 (459)
4 PLN02884 6-phosphofructokinase 100.0 2.6E-92 5.7E-97 745.0 36.3 357 115-477 2-411 (411)
5 PRK14072 6-phosphofructokinase 100.0 6.1E-82 1.3E-86 668.8 33.1 344 153-525 3-415 (416)
6 PRK06555 pyrophosphate--fructo 100.0 2.7E-76 5.8E-81 619.8 34.3 313 153-475 3-400 (403)
7 PRK14071 6-phosphofructokinase 100.0 2.3E-71 5E-76 578.8 30.9 295 152-466 3-350 (360)
8 TIGR02483 PFK_mixed phosphofru 100.0 2.2E-70 4.7E-75 564.4 29.9 279 155-451 1-324 (324)
9 cd00363 PFK Phosphofructokinas 100.0 1.1E-69 2.4E-74 562.2 33.1 288 154-467 1-336 (338)
10 cd00763 Bacterial_PFK Phosphof 100.0 1.3E-68 2.8E-73 549.6 30.8 270 154-468 1-313 (317)
11 TIGR02477 PFKA_PPi diphosphate 100.0 3.2E-69 6.9E-74 585.4 27.2 404 88-500 5-525 (539)
12 cd00765 Pyrophosphate_PFK Phos 100.0 1.1E-68 2.3E-73 581.0 28.0 403 88-499 10-536 (550)
13 TIGR02482 PFKA_ATP 6-phosphofr 100.0 4.2E-68 9.1E-73 542.3 29.4 258 155-451 1-301 (301)
14 PRK07085 diphosphate--fructose 100.0 1.9E-68 4.1E-73 580.5 27.2 401 88-499 10-533 (555)
15 PRK03202 6-phosphofructokinase 100.0 4.3E-67 9.4E-72 539.0 30.9 270 154-468 2-315 (320)
16 PLN02251 pyrophosphate-depende 100.0 8.4E-67 1.8E-71 567.4 28.2 400 88-499 36-551 (568)
17 PLN03028 pyrophosphate--fructo 100.0 8.6E-67 1.9E-71 571.0 26.2 405 88-500 11-540 (610)
18 COG0205 PfkA 6-phosphofructoki 100.0 9.5E-65 2.1E-69 524.3 26.7 272 153-457 2-319 (347)
19 TIGR02478 6PF1K_euk 6-phosphof 100.0 4.4E-64 9.5E-69 562.7 31.3 298 154-478 1-365 (745)
20 PTZ00468 phosphofructokinase f 100.0 1.6E-64 3.6E-69 578.2 26.8 413 88-512 38-566 (1328)
21 cd00764 Eukaryotic_PFK Phospho 100.0 1.6E-63 3.5E-68 556.7 31.2 300 152-478 2-368 (762)
22 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.7E-62 3.7E-67 549.9 32.0 302 140-469 375-735 (745)
23 PTZ00287 6-phosphofructokinase 100.0 5.7E-62 1.2E-66 560.6 25.7 405 88-499 113-624 (1419)
24 cd00764 Eukaryotic_PFK Phospho 100.0 6E-60 1.3E-64 528.0 25.3 353 84-469 305-735 (762)
25 PF00365 PFK: Phosphofructokin 100.0 1.3E-59 2.9E-64 476.3 22.3 238 154-428 1-282 (282)
26 PTZ00287 6-phosphofructokinase 100.0 2.6E-53 5.6E-58 489.2 24.7 342 151-499 834-1332(1419)
27 KOG2440 Pyrophosphate-dependen 100.0 3.1E-48 6.7E-53 423.1 3.8 416 66-481 25-539 (666)
28 PTZ00468 phosphofructokinase f 100.0 1.7E-45 3.7E-50 422.2 22.4 340 152-499 674-1214(1328)
29 KOG2440 Pyrophosphate-dependen 100.0 2.8E-31 6E-36 290.5 18.8 264 158-453 1-323 (666)
30 COG3199 Predicted inorganic po 93.5 0.3 6.4E-06 51.8 8.4 126 229-380 87-220 (355)
31 cd06281 PBP1_LacI_like_5 Ligan 92.0 3.6 7.7E-05 40.2 13.4 119 155-311 1-123 (269)
32 PRK04761 ppnK inorganic polyph 91.7 0.29 6.2E-06 49.8 5.4 42 233-279 10-57 (246)
33 PRK00561 ppnK inorganic polyph 91.5 0.3 6.5E-06 50.0 5.3 42 232-278 18-64 (259)
34 PRK04885 ppnK inorganic polyph 89.8 0.58 1.2E-05 48.0 5.6 45 231-278 17-68 (265)
35 PF01513 NAD_kinase: ATP-NAD k 89.7 0.25 5.4E-06 50.7 2.9 41 234-279 68-108 (285)
36 PRK14077 pnk inorganic polypho 87.8 0.87 1.9E-05 47.2 5.4 32 242-278 64-95 (287)
37 PRK03501 ppnK inorganic polyph 86.6 1.2 2.6E-05 45.8 5.5 42 232-278 20-71 (264)
38 cd01537 PBP1_Repressors_Sugar_ 86.0 30 0.00064 32.7 14.5 121 155-313 1-127 (264)
39 PRK14075 pnk inorganic polypho 85.9 1.2 2.5E-05 45.4 5.0 29 242-278 41-69 (256)
40 PRK10014 DNA-binding transcrip 85.5 22 0.00047 36.2 14.1 123 153-311 64-189 (342)
41 cd06301 PBP1_rhizopine_binding 85.1 21 0.00046 34.6 13.4 78 230-311 44-130 (272)
42 cd01542 PBP1_TreR_like Ligand- 84.2 40 0.00087 32.4 14.7 115 156-310 2-120 (259)
43 PF00532 Peripla_BP_1: Peripla 84.1 25 0.00054 35.6 13.7 120 155-314 3-129 (279)
44 cd01538 PBP1_ABC_xylose_bindin 83.5 26 0.00057 34.8 13.5 119 155-310 1-131 (288)
45 cd01574 PBP1_LacI Ligand-bindi 83.1 39 0.00084 32.6 14.1 116 156-310 2-122 (264)
46 cd06310 PBP1_ABC_sugar_binding 82.4 29 0.00064 33.7 13.1 119 155-310 1-129 (273)
47 PLN02929 NADH kinase 82.4 2.1 4.5E-05 44.9 5.2 32 242-279 64-95 (301)
48 PRK02231 ppnK inorganic polyph 82.1 1.4 2.9E-05 45.5 3.7 32 242-278 42-73 (272)
49 PRK04539 ppnK inorganic polyph 82.0 1.4 3E-05 46.0 3.7 32 242-278 68-99 (296)
50 PRK01911 ppnK inorganic polyph 81.7 1.4 3.1E-05 45.8 3.7 33 242-279 64-96 (292)
51 cd06302 PBP1_LsrB_Quorum_Sensi 81.2 43 0.00093 33.6 14.1 121 155-310 1-129 (298)
52 PRK02649 ppnK inorganic polyph 81.2 1.6 3.4E-05 45.8 3.8 32 242-278 68-99 (305)
53 PRK03378 ppnK inorganic polyph 81.0 1.7 3.7E-05 45.2 4.0 32 242-278 63-94 (292)
54 COG1609 PurR Transcriptional r 80.8 26 0.00057 36.6 12.8 118 154-310 59-181 (333)
55 TIGR01917 gly_red_sel_B glycin 80.3 4.4 9.5E-05 44.4 6.8 46 230-275 324-370 (431)
56 TIGR01918 various_sel_PB selen 80.1 4.5 9.6E-05 44.3 6.8 44 229-272 323-367 (431)
57 cd06298 PBP1_CcpA_like Ligand- 80.0 59 0.0013 31.3 14.3 75 231-311 44-123 (268)
58 PRK03372 ppnK inorganic polyph 79.8 1.8 3.9E-05 45.4 3.7 33 242-279 72-104 (306)
59 cd06292 PBP1_LacI_like_10 Liga 79.0 34 0.00074 33.2 12.2 120 156-310 2-128 (273)
60 cd06312 PBP1_ABC_sugar_binding 78.7 62 0.0013 31.6 14.0 120 155-311 1-132 (271)
61 cd06282 PBP1_GntR_like_2 Ligan 78.5 64 0.0014 30.9 15.0 118 155-310 1-122 (266)
62 PRK03708 ppnK inorganic polyph 78.4 1.8 4E-05 44.6 3.2 33 241-279 56-88 (277)
63 PLN02935 Bifunctional NADH kin 77.9 2.1 4.5E-05 47.8 3.6 31 242-277 262-292 (508)
64 cd06284 PBP1_LacI_like_6 Ligan 77.4 60 0.0013 31.2 13.3 114 156-310 2-121 (267)
65 PRK11303 DNA-binding transcrip 77.0 62 0.0013 32.6 13.8 121 153-311 61-186 (328)
66 PRK10703 DNA-binding transcrip 76.8 83 0.0018 32.0 14.8 122 153-311 59-185 (341)
67 PF00465 Fe-ADH: Iron-containi 76.2 5.3 0.00011 42.2 6.0 59 229-287 65-137 (366)
68 cd06321 PBP1_ABC_sugar_binding 75.6 61 0.0013 31.5 12.9 120 155-311 1-128 (271)
69 PRK10423 transcriptional repre 74.8 74 0.0016 32.0 13.7 122 153-310 56-180 (327)
70 PRK00861 putative lipid kinase 73.9 7.2 0.00016 40.0 6.1 54 228-286 43-96 (300)
71 cd08180 PDD 1,3-propanediol de 73.5 7.3 0.00016 40.7 6.1 53 229-281 65-119 (332)
72 TIGR00288 conserved hypothetic 73.4 38 0.00083 32.5 10.4 50 228-280 88-140 (160)
73 cd06289 PBP1_MalI_like Ligand- 73.2 89 0.0019 30.0 14.2 75 231-310 44-123 (268)
74 PRK02155 ppnK NAD(+)/NADH kina 73.2 3.5 7.6E-05 42.8 3.6 32 242-278 63-94 (291)
75 PLN02727 NAD kinase 73.1 3.2 6.9E-05 49.4 3.6 32 242-278 743-774 (986)
76 PRK10355 xylF D-xylose transpo 72.8 82 0.0018 32.6 13.7 118 152-307 24-148 (330)
77 cd06315 PBP1_ABC_sugar_binding 71.8 73 0.0016 31.5 12.6 122 155-311 2-134 (280)
78 cd06291 PBP1_Qymf_like Ligand 71.7 99 0.0021 29.8 14.4 115 155-311 1-119 (265)
79 PRK14076 pnk inorganic polypho 70.0 4.2 9E-05 46.1 3.6 33 242-279 348-380 (569)
80 TIGR00147 lipid kinase, YegS/R 69.9 9.6 0.00021 38.7 6.0 48 233-285 48-97 (293)
81 cd06278 PBP1_LacI_like_2 Ligan 69.6 1.1E+02 0.0023 29.4 13.9 118 156-313 2-124 (266)
82 cd06274 PBP1_FruR Ligand bindi 69.3 85 0.0018 30.3 12.2 76 230-311 43-123 (264)
83 cd08189 Fe-ADH5 Iron-containin 68.8 11 0.00025 40.0 6.4 58 229-286 70-141 (374)
84 cd08177 MAR Maleylacetate redu 68.5 10 0.00022 39.9 5.9 51 229-284 64-114 (337)
85 cd06304 PBP1_BmpA_like Peripla 68.5 90 0.002 30.5 12.3 118 155-310 1-126 (260)
86 cd08551 Fe-ADH iron-containing 68.4 9.4 0.0002 40.4 5.7 58 229-286 67-137 (370)
87 cd08186 Fe-ADH8 Iron-containin 67.9 10 0.00023 40.5 6.0 53 229-281 71-137 (383)
88 PRK13054 lipid kinase; Reviewe 67.8 11 0.00023 38.8 5.8 57 228-286 42-99 (300)
89 cd06270 PBP1_GalS_like Ligand 67.6 1.2E+02 0.0027 29.3 13.4 116 156-311 2-123 (268)
90 cd06273 PBP1_GntR_like_1 This 67.6 1.2E+02 0.0026 29.2 13.3 76 230-311 43-123 (268)
91 cd06296 PBP1_CatR_like Ligand- 67.2 1.2E+02 0.0027 29.2 14.5 77 230-312 43-125 (270)
92 PRK01231 ppnK inorganic polyph 67.2 5.7 0.00012 41.4 3.7 33 242-279 62-94 (295)
93 PRK13055 putative lipid kinase 67.1 10 0.00022 39.9 5.5 54 229-286 46-100 (334)
94 cd06285 PBP1_LacI_like_7 Ligan 67.1 1.2E+02 0.0027 29.2 13.5 116 156-312 2-122 (265)
95 PRK00843 egsA NAD(P)-dependent 67.1 12 0.00026 39.6 6.1 54 229-287 74-127 (350)
96 cd06306 PBP1_TorT-like TorT-li 66.4 1.3E+02 0.0029 29.3 13.2 76 231-311 46-132 (268)
97 cd08173 Gro1PDH Sn-glycerol-1- 66.1 13 0.00029 38.9 6.3 55 229-288 65-119 (339)
98 cd06300 PBP1_ABC_sugar_binding 66.1 1.3E+02 0.0029 29.1 13.0 120 155-310 1-131 (272)
99 cd07766 DHQ_Fe-ADH Dehydroquin 65.8 9.9 0.00022 39.4 5.2 55 229-286 65-119 (332)
100 PRK13337 putative lipid kinase 65.8 12 0.00026 38.5 5.8 54 229-286 44-98 (304)
101 PLN02958 diacylglycerol kinase 65.8 19 0.00042 40.0 7.7 98 186-286 112-214 (481)
102 cd06533 Glyco_transf_WecG_TagA 65.6 18 0.00039 34.4 6.5 87 153-251 46-133 (171)
103 PRK11914 diacylglycerol kinase 65.5 10 0.00022 39.0 5.2 53 229-286 51-103 (306)
104 COG1570 XseA Exonuclease VII, 65.4 29 0.00063 38.4 8.7 91 153-275 135-229 (440)
105 cd08172 GlyDH-like1 Glycerol d 65.3 13 0.00027 39.2 5.9 53 229-286 63-115 (347)
106 cd06354 PBP1_BmpA_PnrA_like Pe 65.3 1.4E+02 0.0029 29.5 12.9 118 155-310 1-127 (265)
107 PF02601 Exonuc_VII_L: Exonucl 65.0 41 0.00089 34.9 9.5 99 153-283 14-120 (319)
108 cd08170 GlyDH Glycerol dehydro 64.6 11 0.00024 39.6 5.3 53 229-286 64-116 (351)
109 cd01536 PBP1_ABC_sugar_binding 64.1 1.3E+02 0.0029 28.5 15.7 119 155-310 1-127 (267)
110 PRK02645 ppnK inorganic polyph 64.0 6.8 0.00015 40.9 3.6 33 242-279 57-89 (305)
111 COG1597 LCB5 Sphingosine kinas 63.6 9.2 0.0002 39.8 4.4 53 229-286 45-98 (301)
112 cd08194 Fe-ADH6 Iron-containin 63.5 13 0.00029 39.5 5.7 53 229-281 67-132 (375)
113 cd08179 NADPH_BDH NADPH-depend 63.4 16 0.00034 39.0 6.3 56 229-284 68-139 (375)
114 cd06308 PBP1_sensor_kinase_lik 63.2 1.5E+02 0.0033 28.7 12.9 77 230-310 44-128 (270)
115 TIGR03702 lip_kinase_YegS lipi 63.0 16 0.00035 37.4 6.0 60 225-286 35-95 (293)
116 PRK09860 putative alcohol dehy 63.0 15 0.00032 39.5 6.0 58 229-286 75-145 (383)
117 TIGR02638 lactal_redase lactal 62.8 16 0.00034 39.1 6.1 53 229-281 73-140 (379)
118 cd06320 PBP1_allose_binding Pe 62.7 1.5E+02 0.0033 28.7 16.1 121 155-310 1-128 (275)
119 cd06309 PBP1_YtfQ_like Peripla 61.7 1.6E+02 0.0034 28.6 12.6 78 230-311 43-131 (273)
120 PRK15454 ethanol dehydrogenase 61.7 17 0.00036 39.3 6.1 54 229-282 93-159 (395)
121 cd08178 AAD_C C-terminal alcoh 61.5 18 0.00038 39.0 6.2 34 229-262 65-98 (398)
122 PRK01185 ppnK inorganic polyph 61.2 8.5 0.00018 39.7 3.6 29 242-278 52-80 (271)
123 PRK15138 aldehyde reductase; P 61.0 15 0.00033 39.4 5.7 53 229-281 72-140 (387)
124 cd08181 PPD-like 1,3-propanedi 61.0 17 0.00036 38.5 5.9 54 229-282 70-135 (357)
125 COG1013 PorB Pyruvate:ferredox 60.6 32 0.00069 36.0 7.7 83 245-341 90-201 (294)
126 cd06305 PBP1_methylthioribose_ 60.6 1.6E+02 0.0036 28.3 12.8 119 155-310 1-126 (273)
127 TIGR01162 purE phosphoribosyla 60.3 22 0.00048 34.0 5.9 69 221-301 32-100 (156)
128 cd08193 HVD 5-hydroxyvalerate 60.1 19 0.00041 38.3 6.1 53 229-281 70-135 (376)
129 cd06299 PBP1_LacI_like_13 Liga 59.8 1.7E+02 0.0036 28.1 14.1 80 155-271 1-80 (265)
130 PF13528 Glyco_trans_1_3: Glyc 59.6 49 0.0011 33.3 8.8 50 290-346 257-306 (318)
131 PF03808 Glyco_tran_WecB: Glyc 59.4 90 0.0019 29.6 10.0 37 154-196 49-85 (172)
132 cd06277 PBP1_LacI_like_1 Ligan 59.3 70 0.0015 31.0 9.5 76 231-313 47-127 (268)
133 TIGR01481 ccpA catabolite cont 59.2 2E+02 0.0044 28.9 14.2 118 154-310 60-182 (329)
134 cd08176 LPO Lactadehyde:propan 59.0 20 0.00044 38.2 6.1 57 229-285 72-141 (377)
135 cd08185 Fe-ADH1 Iron-containin 59.0 16 0.00036 38.9 5.4 55 229-283 70-142 (380)
136 PRK14987 gluconate operon tran 59.0 2.1E+02 0.0045 29.0 14.0 118 154-310 64-186 (331)
137 COG0061 nadF NAD kinase [Coenz 58.8 9.2 0.0002 39.4 3.4 32 241-277 54-85 (281)
138 cd01545 PBP1_SalR Ligand-bindi 58.3 88 0.0019 30.1 10.0 77 230-311 44-125 (270)
139 cd08182 HEPD Hydroxyethylphosp 57.5 21 0.00046 37.8 6.0 56 229-284 64-136 (367)
140 TIGR01357 aroB 3-dehydroquinat 57.4 21 0.00045 37.5 5.8 50 229-281 65-117 (344)
141 cd08184 Fe-ADH3 Iron-containin 57.1 21 0.00047 37.9 5.9 58 229-286 65-138 (347)
142 TIGR02417 fruct_sucro_rep D-fr 57.0 2E+02 0.0042 29.0 12.7 122 154-311 61-185 (327)
143 cd06319 PBP1_ABC_sugar_binding 56.9 1.9E+02 0.0042 27.9 12.8 84 155-273 1-84 (277)
144 PRK10624 L-1,2-propanediol oxi 56.7 21 0.00045 38.2 5.7 53 229-281 74-141 (382)
145 cd01541 PBP1_AraR Ligand-bindi 56.5 1.6E+02 0.0034 28.6 11.5 118 156-310 2-127 (273)
146 cd06311 PBP1_ABC_sugar_binding 55.9 2E+02 0.0044 27.9 14.0 77 230-310 48-133 (274)
147 cd06317 PBP1_ABC_sugar_binding 55.5 2E+02 0.0043 27.7 13.5 76 231-310 45-131 (275)
148 PRK15395 methyl-galactoside AB 55.0 1.5E+02 0.0033 30.5 11.7 94 149-277 20-114 (330)
149 cd08171 GlyDH-like2 Glycerol d 55.0 20 0.00044 37.7 5.2 52 229-285 65-116 (345)
150 PRK13057 putative lipid kinase 54.6 18 0.00038 36.9 4.6 52 229-286 38-89 (287)
151 PRK09423 gldA glycerol dehydro 54.6 24 0.00052 37.5 5.8 50 230-284 72-121 (366)
152 cd06295 PBP1_CelR Ligand bindi 54.5 97 0.0021 30.1 9.7 76 231-312 53-133 (275)
153 cd06283 PBP1_RegR_EndR_KdgR_li 53.9 2.1E+02 0.0045 27.4 14.3 118 156-312 2-124 (267)
154 cd08187 BDH Butanol dehydrogen 53.1 25 0.00055 37.5 5.7 57 229-285 73-142 (382)
155 PRK03692 putative UDP-N-acetyl 52.9 35 0.00075 34.7 6.3 36 154-196 106-141 (243)
156 PRK00002 aroB 3-dehydroquinate 52.7 23 0.00051 37.5 5.3 50 229-281 76-128 (358)
157 PF07287 DUF1446: Protein of u 52.6 75 0.0016 34.3 9.1 58 222-279 50-108 (362)
158 PRK13059 putative lipid kinase 52.5 22 0.00047 36.6 4.9 46 238-286 52-97 (295)
159 TIGR00237 xseA exodeoxyribonuc 52.5 56 0.0012 35.9 8.3 100 152-283 128-232 (432)
160 cd06288 PBP1_sucrose_transcrip 52.4 2.2E+02 0.0048 27.3 13.0 74 230-310 44-122 (269)
161 cd08195 DHQS Dehydroquinate sy 52.4 25 0.00055 37.0 5.5 50 229-281 69-121 (345)
162 COG1454 EutG Alcohol dehydroge 52.3 29 0.00064 37.6 6.0 52 230-281 74-138 (377)
163 cd06275 PBP1_PurR Ligand-bindi 52.0 2.3E+02 0.0049 27.3 15.1 118 156-311 2-124 (269)
164 cd08183 Fe-ADH2 Iron-containin 52.0 29 0.00062 37.0 5.9 53 229-281 62-131 (374)
165 cd06293 PBP1_LacI_like_11 Liga 51.9 2.2E+02 0.0047 27.5 11.7 116 156-311 2-123 (269)
166 cd08550 GlyDH-like Glycerol_de 51.7 28 0.00062 36.6 5.7 53 229-286 64-116 (349)
167 PF00781 DAGK_cat: Diacylglyce 51.7 13 0.00028 33.2 2.8 54 230-286 41-97 (130)
168 cd08199 EEVS 2-epi-5-epi-valio 51.6 27 0.00058 37.3 5.5 50 229-281 71-124 (354)
169 PRK12361 hypothetical protein; 51.3 26 0.00055 39.3 5.6 53 229-286 284-336 (547)
170 cd08192 Fe-ADH7 Iron-containin 51.1 34 0.00073 36.3 6.2 58 229-286 68-142 (370)
171 cd08191 HHD 6-hydroxyhexanoate 50.9 32 0.0007 36.8 6.1 53 230-282 67-132 (386)
172 PRK00286 xseA exodeoxyribonucl 50.2 96 0.0021 33.8 9.6 99 153-283 135-237 (438)
173 cd08188 Fe-ADH4 Iron-containin 49.9 35 0.00076 36.4 6.1 55 229-283 72-139 (377)
174 COG0206 FtsZ Cell division GTP 49.2 49 0.0011 35.4 7.0 122 151-280 9-137 (338)
175 cd03409 Chelatase_Class_II Cla 49.1 1.3E+02 0.0028 25.2 8.4 78 157-266 3-88 (101)
176 cd06167 LabA_like LabA_like pr 48.6 41 0.00088 30.4 5.6 43 233-278 90-132 (149)
177 PF00731 AIRC: AIR carboxylase 48.1 22 0.00048 33.8 3.8 62 221-289 34-95 (150)
178 cd08196 DHQS-like1 Dehydroquin 48.0 37 0.00081 36.2 5.9 50 229-281 60-112 (346)
179 cd06316 PBP1_ABC_sugar_binding 48.0 2.9E+02 0.0062 27.3 13.4 121 155-310 1-132 (294)
180 cd01540 PBP1_arabinose_binding 47.9 1.9E+02 0.0041 28.3 10.6 85 155-277 1-85 (289)
181 PF02776 TPP_enzyme_N: Thiamin 47.5 78 0.0017 29.7 7.4 67 232-312 5-72 (172)
182 TIGR03405 Phn_Fe-ADH phosphona 47.3 41 0.00089 35.6 6.1 53 229-281 65-136 (355)
183 TIGR02637 RhaS rhamnose ABC tr 47.1 3E+02 0.0066 27.4 14.7 86 156-277 1-87 (302)
184 cd08190 HOT Hydroxyacid-oxoaci 47.0 34 0.00073 37.1 5.5 53 229-281 67-138 (414)
185 PLN02834 3-dehydroquinate synt 46.7 34 0.00073 37.7 5.5 50 229-281 147-199 (433)
186 cd06324 PBP1_ABC_sugar_binding 46.1 3.2E+02 0.007 27.4 12.8 68 231-303 45-133 (305)
187 cd08174 G1PDH-like Glycerol-1- 45.8 49 0.0011 34.6 6.3 55 229-288 61-116 (331)
188 cd08549 G1PDH_related Glycerol 45.4 40 0.00086 35.4 5.6 49 230-284 69-117 (332)
189 cd08175 G1PDH Glycerol-1-phosp 44.7 34 0.00074 36.0 5.0 46 230-281 69-114 (348)
190 cd01575 PBP1_GntR Ligand-bindi 44.1 2.9E+02 0.0064 26.3 22.9 120 156-314 2-126 (268)
191 PF07905 PucR: Purine cataboli 43.9 71 0.0015 28.6 6.3 70 209-280 34-108 (123)
192 TIGR00696 wecB_tagA_cpsF bacte 43.8 64 0.0014 31.2 6.3 85 154-251 49-134 (177)
193 cd06267 PBP1_LacI_sugar_bindin 43.5 2.8E+02 0.0062 26.0 15.0 119 155-313 1-125 (264)
194 cd08198 DHQS-like2 Dehydroquin 43.5 46 0.00099 36.0 5.8 47 231-280 85-134 (369)
195 smart00046 DAGKc Diacylglycero 43.2 28 0.0006 31.2 3.5 42 242-286 49-93 (124)
196 PF00289 CPSase_L_chain: Carba 43.2 31 0.00067 30.8 3.8 45 229-277 61-105 (110)
197 cd06322 PBP1_ABC_sugar_binding 43.0 3.1E+02 0.0068 26.3 12.0 77 231-311 44-128 (267)
198 PF01936 NYN: NYN domain; Int 42.8 26 0.00055 31.2 3.2 46 233-281 86-131 (146)
199 cd06286 PBP1_CcpB_like Ligand- 42.7 3.1E+02 0.0067 26.2 14.1 118 156-312 2-122 (260)
200 COG2515 Acd 1-aminocyclopropan 42.6 4.6E+02 0.0099 28.1 13.1 141 158-314 67-217 (323)
201 cd03822 GT1_ecORF704_like This 42.5 2.3E+02 0.0049 28.0 10.3 85 155-252 1-86 (366)
202 PRK10586 putative oxidoreducta 42.4 39 0.00085 36.1 5.1 54 229-288 74-127 (362)
203 COG0371 GldA Glycerol dehydrog 42.2 35 0.00076 36.8 4.6 54 228-286 70-123 (360)
204 cd06318 PBP1_ABC_sugar_binding 41.9 3.3E+02 0.0073 26.4 11.3 77 231-311 44-130 (282)
205 cd06297 PBP1_LacI_like_12 Liga 41.5 3.4E+02 0.0075 26.4 11.7 113 156-310 2-119 (269)
206 cd06349 PBP1_ABC_ligand_bindin 41.1 68 0.0015 32.6 6.5 60 215-277 160-222 (340)
207 cd03377 TPP_PFOR_PNO Thiamine 40.4 87 0.0019 34.0 7.2 82 245-341 153-264 (365)
208 PRK13210 putative L-xylulose 5 40.2 3.9E+02 0.0084 26.6 11.7 79 230-311 17-114 (284)
209 PF04405 ScdA_N: Domain of Unk 40.1 29 0.00062 27.6 2.7 26 232-259 13-38 (56)
210 cd06313 PBP1_ABC_sugar_binding 40.1 3.7E+02 0.008 26.3 13.1 77 230-310 43-129 (272)
211 PF05036 SPOR: Sporulation rel 40.0 39 0.00085 26.5 3.6 51 222-272 9-72 (76)
212 PRK05670 anthranilate synthase 39.8 46 0.001 31.8 4.7 51 238-300 39-89 (189)
213 cd06307 PBP1_uncharacterized_s 39.8 2.3E+02 0.0049 27.6 9.7 77 231-310 48-131 (275)
214 cd08169 DHQ-like Dehydroquinat 39.7 61 0.0013 34.3 6.0 50 229-281 67-119 (344)
215 PRK13951 bifunctional shikimat 39.3 50 0.0011 36.9 5.4 118 158-281 140-273 (488)
216 PRK06203 aroB 3-dehydroquinate 39.0 57 0.0012 35.3 5.7 47 231-280 97-146 (389)
217 PF12804 NTP_transf_3: MobA-li 38.8 2.2E+02 0.0047 25.6 8.8 96 231-344 27-125 (160)
218 cd00537 MTHFR Methylenetetrahy 38.8 42 0.00091 34.0 4.5 73 206-278 45-137 (274)
219 cd01391 Periplasmic_Binding_Pr 38.8 3.2E+02 0.0069 25.2 14.5 103 229-338 45-156 (269)
220 COG3657 Uncharacterized protei 38.5 23 0.0005 31.4 2.1 27 140-166 56-82 (100)
221 TIGR02177 PorB_KorB 2-oxoacid: 38.5 64 0.0014 33.7 5.8 39 244-287 72-112 (287)
222 cd06279 PBP1_LacI_like_3 Ligan 38.2 1.5E+02 0.0033 29.2 8.2 72 233-310 47-122 (283)
223 cd06271 PBP1_AglR_RafR_like Li 38.1 2.1E+02 0.0046 27.3 9.1 74 232-311 49-127 (268)
224 PRK10653 D-ribose transporter 37.8 4.2E+02 0.0091 26.3 14.1 113 153-302 26-144 (295)
225 smart00481 POLIIIAc DNA polyme 37.5 1.3E+02 0.0028 23.6 6.2 51 229-281 15-65 (67)
226 cd06290 PBP1_LacI_like_9 Ligan 37.5 3.8E+02 0.0082 25.7 14.4 115 156-311 2-122 (265)
227 PRK05637 anthranilate synthase 36.9 69 0.0015 31.6 5.5 43 236-278 38-80 (208)
228 KOG4180 Predicted kinase [Gene 36.9 21 0.00046 38.1 1.9 68 204-277 45-135 (395)
229 cd08197 DOIS 2-deoxy-scyllo-in 36.7 71 0.0015 34.1 5.9 50 229-281 68-120 (355)
230 cd06280 PBP1_LacI_like_4 Ligan 36.6 4E+02 0.0086 25.7 11.5 114 156-310 2-121 (263)
231 cd01965 Nitrogenase_MoFe_beta_ 36.3 4.3E+02 0.0093 28.7 11.9 142 231-385 70-246 (428)
232 PRK09701 D-allose transporter 35.9 4.8E+02 0.01 26.4 14.1 121 155-310 26-162 (311)
233 PRK04155 chaperone protein Hch 35.6 3.1E+02 0.0066 28.7 10.2 45 231-275 134-186 (287)
234 PF02401 LYTB: LytB protein; 35.4 79 0.0017 33.0 5.8 44 230-275 198-241 (281)
235 cd06272 PBP1_hexuronate_repres 35.3 3.3E+02 0.007 26.2 9.9 112 156-310 2-117 (261)
236 cd06335 PBP1_ABC_ligand_bindin 34.8 1.8E+02 0.0039 29.9 8.5 60 214-276 162-224 (347)
237 PRK10247 putative ABC transpor 34.0 86 0.0019 30.6 5.7 49 293-342 145-195 (225)
238 cd06326 PBP1_STKc_like Type I 33.6 2E+02 0.0044 28.9 8.4 104 166-279 118-225 (336)
239 PRK13805 bifunctional acetalde 33.4 83 0.0018 37.5 6.3 34 230-263 527-560 (862)
240 cd07995 TPK Thiamine pyrophosp 33.3 1.6E+02 0.0035 28.7 7.4 90 158-254 2-102 (208)
241 PRK11041 DNA-binding transcrip 33.3 4.9E+02 0.011 25.7 14.0 119 153-310 35-158 (309)
242 cd06347 PBP1_ABC_ligand_bindin 33.1 1.6E+02 0.0035 29.5 7.6 59 216-277 162-223 (334)
243 TIGR00566 trpG_papA glutamine 33.0 64 0.0014 31.0 4.5 43 236-278 37-79 (188)
244 PF13727 CoA_binding_3: CoA-bi 33.0 67 0.0014 29.1 4.4 45 231-275 130-174 (175)
245 cd03770 SR_TndX_transposase Se 32.9 3.8E+02 0.0082 24.3 10.1 82 258-345 24-109 (140)
246 PF04263 TPK_catalytic: Thiami 32.8 2.7E+02 0.0059 25.3 8.3 88 186-275 17-121 (123)
247 PF02645 DegV: Uncharacterised 32.5 1.2E+02 0.0025 31.0 6.5 88 205-301 41-133 (280)
248 cd06449 ACCD Aminocyclopropane 32.4 5E+02 0.011 26.7 11.2 78 231-313 40-117 (307)
249 cd03238 ABC_UvrA The excision 32.1 96 0.0021 29.7 5.5 48 293-342 95-146 (176)
250 TIGR00676 fadh2 5,10-methylene 32.1 75 0.0016 32.5 5.0 56 224-279 66-135 (272)
251 cd06342 PBP1_ABC_LIVBP_like Ty 32.0 1.7E+02 0.0038 29.2 7.7 59 216-277 161-222 (334)
252 PRK10771 thiQ thiamine transpo 31.8 98 0.0021 30.2 5.7 49 293-342 137-187 (232)
253 PLN02204 diacylglycerol kinase 31.8 47 0.001 38.2 3.8 38 221-259 195-235 (601)
254 PLN02821 1-hydroxy-2-methyl-2- 31.8 77 0.0017 35.4 5.3 51 230-281 350-400 (460)
255 CHL00101 trpG anthranilate syn 31.8 61 0.0013 31.2 4.1 42 237-278 38-79 (190)
256 PRK03359 putative electron tra 31.6 1.4E+02 0.0031 30.6 7.0 53 233-286 71-128 (256)
257 cd06346 PBP1_ABC_ligand_bindin 31.6 2.2E+02 0.0047 28.7 8.3 60 214-276 161-223 (312)
258 TIGR00732 dprA DNA protecting 31.5 4.8E+02 0.01 26.0 10.5 65 207-283 116-193 (220)
259 COG2910 Putative NADH-flavin r 31.2 1.4E+02 0.0031 29.9 6.4 94 154-257 1-111 (211)
260 PRK11629 lolD lipoprotein tran 31.1 1.1E+02 0.0023 30.0 5.7 48 294-342 154-203 (233)
261 PF02633 Creatininase: Creatin 31.1 1.7E+02 0.0037 29.1 7.3 72 231-302 88-169 (237)
262 cd06268 PBP1_ABC_transporter_L 30.9 2.5E+02 0.0055 26.8 8.3 49 229-280 177-225 (298)
263 cd00316 Oxidoreductase_nitroge 30.8 5.2E+02 0.011 27.2 11.3 140 231-384 69-224 (399)
264 TIGR02826 RNR_activ_nrdG3 anae 30.7 1.2E+02 0.0027 28.3 5.9 44 230-274 47-93 (147)
265 KOG4435 Predicted lipid kinase 30.5 69 0.0015 35.3 4.5 50 231-283 106-155 (535)
266 COG0329 DapA Dihydrodipicolina 30.4 5.5E+02 0.012 26.7 11.1 103 231-341 27-136 (299)
267 cd06294 PBP1_ycjW_transcriptio 30.3 2.4E+02 0.0051 27.1 8.0 75 231-311 49-129 (270)
268 TIGR02769 nickel_nikE nickel i 30.0 1E+02 0.0022 30.9 5.6 50 293-343 158-209 (265)
269 PRK01045 ispH 4-hydroxy-3-meth 29.9 83 0.0018 33.1 5.0 51 230-282 199-249 (298)
270 cd06287 PBP1_LacI_like_8 Ligan 29.8 1.9E+02 0.0042 28.5 7.4 67 238-310 52-124 (269)
271 TIGR02634 xylF D-xylose ABC tr 29.6 5.6E+02 0.012 25.7 10.9 77 231-311 43-126 (302)
272 PF02844 GARS_N: Phosphoribosy 29.5 60 0.0013 28.8 3.3 46 228-278 48-93 (100)
273 COG0159 TrpA Tryptophan syntha 29.5 6.7E+02 0.014 26.1 11.3 85 231-318 4-136 (265)
274 cd06329 PBP1_SBP_like_3 Peripl 29.5 2.4E+02 0.0051 28.9 8.2 58 217-277 172-233 (342)
275 COG1168 MalY Bifunctional PLP- 29.5 2.4E+02 0.0051 30.9 8.3 132 157-303 85-282 (388)
276 PRK15404 leucine ABC transport 29.3 2.3E+02 0.005 29.8 8.3 64 211-277 182-248 (369)
277 PRK02910 light-independent pro 29.2 6.6E+02 0.014 28.2 12.2 145 230-384 72-233 (519)
278 PRK06851 hypothetical protein; 28.8 1.9E+02 0.0042 31.3 7.6 63 230-314 201-266 (367)
279 PRK12377 putative replication 28.5 6.4E+02 0.014 25.6 11.0 103 233-339 92-201 (248)
280 PRK06774 para-aminobenzoate sy 28.5 62 0.0013 31.0 3.5 53 236-300 37-89 (191)
281 TIGR01274 ACC_deam 1-aminocycl 28.3 7.1E+02 0.015 26.1 12.1 78 231-313 54-131 (337)
282 cd04509 PBP1_ABC_transporter_G 28.3 2.7E+02 0.0059 26.6 8.0 46 229-277 178-225 (299)
283 PRK13371 4-hydroxy-3-methylbut 28.3 1.1E+02 0.0024 33.5 5.6 52 229-281 275-326 (387)
284 cd00951 KDGDH 5-dehydro-4-deox 28.2 6.3E+02 0.014 25.9 11.1 102 231-342 23-132 (289)
285 smart00857 Resolvase Resolvase 27.9 4.3E+02 0.0094 23.5 9.4 82 258-345 21-105 (148)
286 TIGR00215 lpxB lipid-A-disacch 27.1 1.4E+02 0.003 31.9 6.2 44 231-278 78-121 (385)
287 PF13407 Peripla_BP_4: Peripla 27.0 5.1E+02 0.011 24.8 9.7 138 156-335 1-152 (257)
288 cd01966 Nitrogenase_NifN_1 Nit 26.9 7.6E+02 0.017 26.9 11.9 140 232-385 71-247 (417)
289 PRK12360 4-hydroxy-3-methylbut 26.9 96 0.0021 32.4 4.8 51 230-282 198-248 (281)
290 PRK12570 N-acetylmuramic acid- 26.9 5.4E+02 0.012 26.9 10.3 111 165-280 41-163 (296)
291 cd06276 PBP1_FucR_like Ligand- 26.8 3E+02 0.0064 26.9 8.1 73 232-310 43-123 (247)
292 cd01971 Nitrogenase_VnfN_like 26.7 8.2E+02 0.018 26.6 12.2 142 232-385 76-232 (427)
293 PRK10401 DNA-binding transcrip 26.7 6.9E+02 0.015 25.4 13.5 117 154-310 60-182 (346)
294 cd06334 PBP1_ABC_ligand_bindin 26.7 5.6E+02 0.012 26.6 10.5 104 166-277 117-227 (351)
295 cd06337 PBP1_ABC_ligand_bindin 26.6 1.6E+02 0.0034 30.6 6.4 64 214-280 172-238 (357)
296 cd06314 PBP1_tmGBP Periplasmic 26.6 6E+02 0.013 24.6 16.1 117 155-310 1-126 (271)
297 PRK10499 PTS system N,N'-diace 26.3 4.5E+02 0.0097 23.2 8.3 36 246-281 8-43 (106)
298 COG0041 PurE Phosphoribosylcar 26.0 1.1E+02 0.0024 29.5 4.6 59 224-289 39-97 (162)
299 TIGR02673 FtsE cell division A 25.9 1.4E+02 0.003 28.5 5.5 50 291-342 143-194 (214)
300 TIGR00677 fadh2_euk methylenet 25.6 1.2E+02 0.0027 31.3 5.3 87 188-278 32-138 (281)
301 PRK03910 D-cysteine desulfhydr 25.0 8E+02 0.017 25.6 12.0 78 231-313 52-129 (331)
302 PRK08617 acetolactate synthase 24.8 1E+02 0.0022 34.4 4.9 65 231-310 8-73 (552)
303 TIGR02990 ectoine_eutA ectoine 24.8 6.4E+02 0.014 25.5 10.2 97 231-331 108-205 (239)
304 PLN02335 anthranilate synthase 24.7 1E+02 0.0022 30.7 4.3 41 238-278 58-98 (222)
305 cd05015 SIS_PGI_1 Phosphogluco 24.7 1.9E+02 0.0041 27.0 6.0 39 230-268 6-45 (158)
306 PRK10253 iron-enterobactin tra 24.7 1.5E+02 0.0032 29.8 5.6 49 293-342 151-201 (265)
307 PRK12815 carB carbamoyl phosph 24.4 3.6E+02 0.0079 33.2 9.7 107 152-278 6-119 (1068)
308 PF01761 DHQ_synthase: 3-dehyd 24.2 1.1E+02 0.0024 31.4 4.6 49 230-281 14-65 (260)
309 PF13353 Fer4_12: 4Fe-4S singl 24.2 1.3E+02 0.0028 26.5 4.6 41 230-270 40-84 (139)
310 TIGR00262 trpA tryptophan synt 24.0 2E+02 0.0043 29.4 6.4 48 231-280 104-151 (256)
311 PF04208 MtrA: Tetrahydrometha 24.0 1.5E+02 0.0033 29.0 5.2 55 215-270 38-95 (176)
312 PRK13111 trpA tryptophan synth 24.0 1.9E+02 0.0042 29.6 6.3 52 230-283 105-156 (258)
313 PF04122 CW_binding_2: Putativ 23.9 1.1E+02 0.0025 25.6 4.0 39 217-257 49-87 (92)
314 COG0041 PurE Phosphoribosylcar 23.9 1.9E+02 0.0041 28.0 5.7 119 219-352 6-127 (162)
315 cd01539 PBP1_GGBP Periplasmic 23.9 7E+02 0.015 25.0 10.4 43 231-277 46-88 (303)
316 PRK12342 hypothetical protein; 23.8 2.7E+02 0.0058 28.7 7.3 53 233-286 68-125 (254)
317 cd03216 ABC_Carb_Monos_I This 23.7 1.8E+02 0.0039 26.9 5.7 48 293-342 90-139 (163)
318 cd06303 PBP1_LuxPQ_Quorum_Sens 23.7 6.2E+02 0.013 24.8 9.8 77 231-310 49-137 (280)
319 PF04392 ABC_sub_bind: ABC tra 23.6 1.7E+02 0.0036 29.8 5.8 73 155-256 1-73 (294)
320 PRK14021 bifunctional shikimat 23.6 1.4E+02 0.0031 33.7 5.7 49 230-281 254-305 (542)
321 COG0685 MetF 5,10-methylenetet 23.4 1.4E+02 0.003 31.1 5.3 79 187-268 47-139 (291)
322 TIGR00216 ispH_lytB (E)-4-hydr 23.4 1.8E+02 0.0038 30.4 5.9 45 229-275 196-240 (280)
323 cd01744 GATase1_CPSase Small c 23.3 1.5E+02 0.0033 28.0 5.2 50 238-301 35-87 (178)
324 PRK10727 DNA-binding transcrip 23.1 8E+02 0.017 24.9 14.2 119 153-311 59-183 (343)
325 KOG4131 Ngg1-interacting facto 23.1 5.4E+02 0.012 26.7 9.0 108 220-346 144-266 (272)
326 cd06338 PBP1_ABC_ligand_bindin 23.0 4.7E+02 0.01 26.4 9.0 62 215-279 166-230 (345)
327 PRK07064 hypothetical protein; 22.9 92 0.002 34.6 4.1 65 231-310 6-72 (544)
328 PRK13363 protocatechuate 4,5-d 22.9 9.5E+02 0.021 25.7 12.0 24 230-253 76-99 (335)
329 PF10126 Nit_Regul_Hom: Unchar 22.8 2.7E+02 0.0059 25.3 6.1 75 193-279 26-102 (110)
330 PRK05568 flavodoxin; Provision 22.7 5.4E+02 0.012 22.8 10.3 34 246-279 7-40 (142)
331 PRK09526 lacI lac repressor; R 22.6 4.9E+02 0.011 26.3 9.0 75 231-310 109-187 (342)
332 COG1122 CbiO ABC-type cobalt t 22.5 1.9E+02 0.0042 29.2 5.9 48 293-341 146-195 (235)
333 PRK11247 ssuB aliphatic sulfon 22.3 1.8E+02 0.0038 29.4 5.6 48 294-342 142-191 (257)
334 PRK06835 DNA replication prote 21.9 4.8E+02 0.01 27.7 9.0 107 233-344 174-288 (329)
335 PRK05858 hypothetical protein; 21.9 83 0.0018 35.2 3.4 65 231-310 8-73 (542)
336 PRK15408 autoinducer 2-binding 21.9 9.2E+02 0.02 25.2 17.4 88 152-276 22-110 (336)
337 cd06323 PBP1_ribose_binding Pe 21.9 6.9E+02 0.015 23.7 15.1 120 156-312 2-129 (268)
338 PRK11780 isoprenoid biosynthes 21.9 1E+02 0.0023 30.6 3.8 40 237-276 80-135 (217)
339 PF01994 Trm56: tRNA ribose 2' 21.8 40 0.00086 31.0 0.7 54 210-263 16-69 (120)
340 cd03235 ABC_Metallic_Cations A 21.8 1.9E+02 0.0042 27.6 5.6 48 293-342 140-189 (213)
341 TIGR01277 thiQ thiamine ABC tr 21.7 2.2E+02 0.0049 27.3 6.0 49 293-342 136-186 (213)
342 TIGR01862 N2-ase-Ialpha nitrog 21.6 5.3E+02 0.011 28.3 9.5 91 221-331 196-287 (443)
343 PRK02399 hypothetical protein; 21.5 97 0.0021 34.1 3.7 89 183-281 29-126 (406)
344 PF00532 Peripla_BP_1: Peripla 21.4 4E+02 0.0086 26.9 8.0 24 406-429 235-258 (279)
345 cd03255 ABC_MJ0796_Lo1CDE_FtsE 21.3 2.3E+02 0.005 27.2 6.0 48 294-342 149-198 (218)
346 PRK00885 phosphoribosylamine-- 21.3 5.9E+02 0.013 27.3 9.7 43 229-276 49-91 (420)
347 cd03466 Nitrogenase_NifN_2 Nit 21.2 1.1E+03 0.023 25.7 11.8 141 231-385 73-247 (429)
348 PF13458 Peripla_BP_6: Peripla 21.2 4.9E+02 0.011 26.1 8.6 64 215-281 160-227 (343)
349 cd03293 ABC_NrtD_SsuB_transpor 21.2 2.4E+02 0.0051 27.2 6.1 49 293-342 139-189 (220)
350 cd03297 ABC_ModC_molybdenum_tr 21.2 2.3E+02 0.0049 27.2 5.9 49 293-342 139-189 (214)
351 cd03237 ABC_RNaseL_inhibitor_d 21.2 2.1E+02 0.0045 28.7 5.8 49 293-342 123-173 (246)
352 TIGR03282 methan_mark_13 putat 21.1 4.7E+02 0.01 28.4 8.6 86 231-325 64-149 (352)
353 PRK10584 putative ABC transpor 20.9 2.3E+02 0.0049 27.5 5.9 48 294-342 155-204 (228)
354 KOG1357 Serine palmitoyltransf 20.8 94 0.002 34.8 3.4 39 242-280 422-469 (519)
355 cd03230 ABC_DR_subfamily_A Thi 20.7 2.3E+02 0.0051 26.3 5.8 48 293-342 103-152 (173)
356 TIGR02405 trehalos_R_Ecol treh 20.7 8.5E+02 0.019 24.3 15.2 115 154-310 60-178 (311)
357 cd06343 PBP1_ABC_ligand_bindin 20.7 4.6E+02 0.01 26.8 8.4 59 214-275 168-229 (362)
358 TIGR02323 CP_lyasePhnK phospho 20.6 2.2E+02 0.0048 28.0 5.9 50 293-343 156-207 (253)
359 PLN02591 tryptophan synthase 20.6 2.5E+02 0.0053 28.8 6.3 48 230-280 94-142 (250)
360 cd03259 ABC_Carb_Solutes_like 20.4 2.4E+02 0.0052 26.9 5.9 48 294-342 139-188 (213)
361 KOG2749 mRNA cleavage and poly 20.3 2.3E+02 0.0049 31.1 6.0 58 216-280 211-273 (415)
362 PRK08978 acetolactate synthase 20.2 98 0.0021 34.6 3.6 68 231-314 4-73 (548)
363 PRK11557 putative DNA-binding 20.2 7.9E+02 0.017 24.6 9.9 95 230-345 117-212 (278)
364 cd03240 ABC_Rad50 The catalyti 20.2 2.4E+02 0.0051 27.4 5.9 49 294-343 130-181 (204)
365 cd03267 ABC_NatA_like Similar 20.2 2.5E+02 0.0053 27.6 6.1 49 293-342 161-211 (236)
366 cd01672 TMPK Thymidine monopho 20.2 1.5E+02 0.0033 27.3 4.4 34 246-279 3-38 (200)
367 COG1062 AdhC Zn-dependent alco 20.1 6.7E+02 0.015 27.4 9.5 102 154-280 187-289 (366)
368 cd02072 Glm_B12_BD B12 binding 20.1 2.4E+02 0.0053 26.0 5.5 49 229-280 65-117 (128)
369 cd01967 Nitrogenase_MoFe_alpha 20.1 1.1E+03 0.023 25.2 11.7 138 231-384 76-231 (406)
370 TIGR00315 cdhB CO dehydrogenas 20.0 4.7E+02 0.01 25.1 7.7 86 230-318 16-114 (162)
371 PF13685 Fe-ADH_2: Iron-contai 20.0 1E+02 0.0022 31.6 3.3 52 230-286 63-114 (250)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=1.2e-112 Score=909.57 Aligned_cols=419 Identities=86% Similarity=1.357 Sum_probs=398.6
Q ss_pred CCCCceecCCCcccccCCCcccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCCccccccccCCccce
Q 009804 68 NSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKV 147 (525)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~~l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~~~~~f~~aGpr~~~ 147 (525)
.++.|+++|++||+||+||||+||+|++|+++||++.++.|+.+..+||+++++|+.++..+...++..+|++||||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~agpr~~i 81 (484)
T PLN02564 2 SSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTHFRRAGPRQKV 81 (484)
T ss_pred CCcCccccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCccceecCCcceE
Confidence 46789999999999999999999999999999999999999999999999999999999888666778999999999999
Q ss_pred eccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC
Q 009804 148 YFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG 227 (525)
Q Consensus 148 ~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~ 227 (525)
||+|+++|||||||||+|||||+|||++|+.+...|++.+||||++||+||+++++++|+++.|++|+++|||+|||||+
T Consensus 82 ~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~ 161 (484)
T PLN02564 82 YFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRG 161 (484)
T ss_pred EEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCC
Confidence 99999999999999999999999999999999877888899999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc------------------
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------ 289 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------ 289 (525)
++++++++++|++++||+||+||||||+++|++|+++++++|++|+||||||||||||++||
T Consensus 162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~ 241 (484)
T PLN02564 162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 241 (484)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCCCCcc
Q 009804 290 --------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDL 349 (525)
Q Consensus 290 --------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa~~~~ 349 (525)
+|||||++++||+++||+|||||+||+++++.+|+++|++|+++++|+|||||||+++.+
T Consensus 242 i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~ 321 (484)
T PLN02564 242 AHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDL 321 (484)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccch
Confidence 999999999999977999999999999999999999999999999999999999999988
Q ss_pred hhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009804 350 LAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAG 429 (525)
Q Consensus 350 ~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG 429 (525)
+.+.+....++|+|||++|+|++.||+++|+++|+.+.++.+++||++|||+|||++|+++|++||++||+.|||++|+|
T Consensus 322 ~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG 401 (484)
T PLN02564 322 IAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAG 401 (484)
T ss_pred hhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 87654334569999999999999999999999995455667889999999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEEEechhHHhhhcCcCCcchHHHHHHHhccCCCCCcCcccccchH
Q 009804 430 YTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDK 486 (525)
Q Consensus 430 ~tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~~~~~~ 486 (525)
+||+||+++|++++++||++++..+|+|++++++|+++|++||||+|+.+++....+
T Consensus 402 ~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~ 458 (484)
T PLN02564 402 YTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAK 458 (484)
T ss_pred CCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhh
Confidence 999999999999999999999999999999999999999999999999977654443
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3.4e-100 Score=810.27 Aligned_cols=379 Identities=50% Similarity=0.815 Sum_probs=358.6
Q ss_pred CCCCCCCCCCCCCCCccceeeeccCCccccchhcccC------CCccccccccCCccceeccCCCeEEEEEcCCCChhhH
Q 009804 95 LPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKD------SPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGL 168 (525)
Q Consensus 95 ~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~------~~~~~~f~~aGpr~~~~f~~~~~~iaIvtsGG~~PGl 168 (525)
-|+++|||..++.++... +||+++++|+.++..+.. ..+..+|++||||+++||+|+++||||+||||+||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 578999999999999888 899999999998887643 1255789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhhhcc---CCeEeCChhhhhcccccCcccccccCCCCcHHHHHHHHHHcCCCE
Q 009804 169 NTVIREIVYSLYYMYGVKRVLGIDGGYRGFYA---KNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQ 245 (525)
Q Consensus 169 N~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~---~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~ 245 (525)
|+|||++++.+..+|++.+||||++||+||++ +++++|+++.|++|+++|||+|||||+++++++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999887888899999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc------------------------------------
Q 009804 246 VYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------------------------ 289 (525)
Q Consensus 246 L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------------------------ 289 (525)
||+|||||||++|++|+++++++|++|+||||||||||||++||
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999
Q ss_pred --hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCCCCcchhHHhhhhccccccCCcc
Q 009804 290 --LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKL 367 (525)
Q Consensus 290 --~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~ 367 (525)
+|||||++++||+++||+|||||.||+++|+.+|+++|++|+++++|+|||||||+++.+... ..++|+|||++
T Consensus 256 GR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~----~~~~Da~gn~~ 331 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDD----TGETDASGNPK 331 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccc----cccccccCCcc
Confidence 999999999999978999999999999999999999999999999999999999999876643 34699999999
Q ss_pred chhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEEech
Q 009804 368 LQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPF 447 (525)
Q Consensus 368 L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~~~~vPL 447 (525)
|++++.+|+++|+++|+ +.++.+++||++|||+|||++||++||+||++||+.|||++|+|+||+|||++|++++++||
T Consensus 332 l~~ig~~L~~~i~~~~~-~~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl 410 (443)
T PRK06830 332 LGDIGLFLKDRIKEYFK-ARGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPI 410 (443)
T ss_pred cccHHHHHHHHHHHHhc-ccCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeH
Confidence 99999999999999996 33556789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCcCCcchHHHHHHHhccCCCCCcCc
Q 009804 448 YRIIEKQHHVVITDRMWARLLSSTNQPSFMNH 479 (525)
Q Consensus 448 ~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~ 479 (525)
+++++.+|++++++.+|+++|++||||.|+.+
T Consensus 411 ~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~~~ 442 (443)
T PRK06830 411 DLAVSKRKKVNPEGDLWRSVLESTGQPRSMGN 442 (443)
T ss_pred HHHhccCCCCCCccHHHHHHHHHhCCCccccc
Confidence 99999899999999999999999999999864
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=3.5e-98 Score=798.38 Aligned_cols=393 Identities=48% Similarity=0.790 Sum_probs=355.7
Q ss_pred cccCCCcccccCCC--C----------CCCCCCCCCCCCCCccceeeeccCCccccchhcccC--CCccccccccCCccc
Q 009804 81 VLEDVPHLSDYIPD--L----------PTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKD--SPRGTHFRRAGPRQK 146 (525)
Q Consensus 81 ~~~~v~~l~~~~p~--~----------p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~--~~~~~~f~~aGpr~~ 146 (525)
.+++|++|.--+|+ | ++++||+... --.....||+++++|+.++..++. ..+..+|++||||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~ 80 (459)
T PTZ00286 3 EIERVNNLIIDLPDAPLPSVVNPDLGECNLRGVFGGN--GFLPREAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKH 80 (459)
T ss_pred eeecccccccCCccccCCCcccccCCcCCCCCCcccc--ccCCccceecCCCeEEeecccCccccccccchheecCCcee
Confidence 35666666544442 3 4556665421 012235799999999999888753 235689999999999
Q ss_pred eeccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC
Q 009804 147 VYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR 226 (525)
Q Consensus 147 ~~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR 226 (525)
+||+|+++|||||||||+|||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||
T Consensus 81 ~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR 160 (459)
T PTZ00286 81 LYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSR 160 (459)
T ss_pred EEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCC
Confidence 99999999999999999999999999999999987788889999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-----------------
Q 009804 227 GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL----------------- 289 (525)
Q Consensus 227 ~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD----------------- 289 (525)
+++++++++++|++++||+||+||||||+++|.+|+++++++|++|+||||||||||||++||
T Consensus 161 ~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~ 240 (459)
T PTZ00286 161 GGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIR 240 (459)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCCCCc
Q 009804 290 ---------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQD 348 (525)
Q Consensus 290 ---------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa~~~ 348 (525)
+|||||++++||+++||+|||||.||+++ +|+++|++|+++++|+|||||||+++.
T Consensus 241 ~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~ 317 (459)
T PTZ00286 241 AAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQS 317 (459)
T ss_pred HHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccc
Confidence 99999999999996799999999999998 899999999999999999999999987
Q ss_pred chhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHc
Q 009804 349 LLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMA 428 (525)
Q Consensus 349 ~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~a 428 (525)
+.+..+ ..++|+|||++|+|++.+|+++|+++|+. .+..+++||++|||+|||++||++|++||++||+.|||++|+
T Consensus 318 ~~~~~~--~~~~D~~Gn~~l~dig~~L~~~I~~~~~~-~~~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~ 394 (459)
T PTZ00286 318 LKDADL--DLGTDASGNKKLWDIGVYLKDEITKYLKK-KKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMA 394 (459)
T ss_pred cccccc--cccccccCCcccccHHHHHHHHHHHHHhh-ccCceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 776543 24589999999999999999999999973 346788999999999999999999999999999999999999
Q ss_pred CCCceEEEEECCeEEEechhHH-hhhcCcCCcchHHHHHHHhccCCCCCcCccc
Q 009804 429 GYTGYTSGLVNGRQTYIPFYRI-IEKQHHVVITDRMWARLLSSTNQPSFMNHKD 481 (525)
Q Consensus 429 G~tg~mVgi~n~~~~~vPL~~v-~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~ 481 (525)
|+||+||+++|++++++||+++ .+.+|++++++++|.+++++||||+|+...+
T Consensus 395 G~tg~~Vg~~~~~~~~vPl~~v~~~~~~~v~~~~~~w~~~~~~tgqp~~~~~~~ 448 (459)
T PTZ00286 395 GFTGFIIGHVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLNNEE 448 (459)
T ss_pred CCCCEEEEEECCEEEEEeHHHHhCCCccccCcchHHHHHHHHhcCCCCccccHH
Confidence 9999999999999999999994 5667899999999999999999999998654
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=2.6e-92 Score=745.03 Aligned_cols=357 Identities=52% Similarity=0.879 Sum_probs=329.6
Q ss_pred eeccCCccccchhcccC--CC-----------ccccccccCCccceeccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHH
Q 009804 115 FVHVDDTVPQKVVVHKD--SP-----------RGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYY 181 (525)
Q Consensus 115 fv~~~~~V~~~~~~~~~--~~-----------~~~~f~~aGpr~~~~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~ 181 (525)
||+++|+|+.++....+ ++ .+.+|+|||||+++||+|.++|||||||||+|||||+|||++++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~ 81 (411)
T PLN02884 2 YVNNDDRVLLKVIKYSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI 81 (411)
T ss_pred CcCccchhheeeeeccCCCcccccccCCCcccchhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH
Confidence 88999999998764211 11 236789999999999999999999999999999999999999999864
Q ss_pred hcCCeEEEEEccchhhhccCC--eEeCChhhhhcccccCcccccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHH
Q 009804 182 MYGVKRVLGIDGGYRGFYAKN--TIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAS 259 (525)
Q Consensus 182 ~~g~~~V~Gi~~G~~GL~~~~--~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~ 259 (525)
||..+||||++||+||++++ .++|++++|++|+++|||+|||||+++++++++++|++++||+||+||||||+++|+
T Consensus 82 -~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~ 160 (411)
T PLN02884 82 -YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGAN 160 (411)
T ss_pred -cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHH
Confidence 78668999999999999999 677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeEEEeeccccCCCCCCc--------------------------------------hhhHHHHHHhhh
Q 009804 260 VIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--------------------------------------LTWFIAMYATLA 301 (525)
Q Consensus 260 ~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--------------------------------------~sG~IAl~aaLA 301 (525)
+|+++++++|++|+||||||||||||++|| +|||||++++||
T Consensus 161 ~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA 240 (411)
T PLN02884 161 AIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLA 240 (411)
T ss_pred HHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999 999999999999
Q ss_pred cCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHH
Q 009804 302 SRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKD 381 (525)
Q Consensus 302 s~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~ 381 (525)
++.||+|||||.||+++++++++++|+++++.++|+|||||||+++.+... ...+|+|||++|++++.+|+++|++
T Consensus 241 ~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~~~iIVVAEG~g~~~~~~----~~~~Da~G~~~l~~~~~~La~~i~~ 316 (411)
T PLN02884 241 SGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQK----TNATDASGNPVLGDIGVHLQQEIKK 316 (411)
T ss_pred cCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCCcEEEEEecccccccccc----cccccccCCcccCcHHHHHHHHHHH
Confidence 944999999999999987789999999999989999999999997655532 2358999999999999999999999
Q ss_pred HhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEEechhHHhhhcCcCCcch
Q 009804 382 HFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITD 461 (525)
Q Consensus 382 ~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~ 461 (525)
+++ +.+..+.+|+++|||+|||++|+++||++|++||+.||+++++|++|+||+++|++++++||+++++.+|++++++
T Consensus 317 ~~~-~~g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~~ 395 (411)
T PLN02884 317 HFK-DIGVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNS 395 (411)
T ss_pred Hhh-ccCCCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCCc
Confidence 975 3344467899999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHHhccCCCCCc
Q 009804 462 RMWARLLSSTNQPSFM 477 (525)
Q Consensus 462 ~~w~~~l~~tgqp~f~ 477 (525)
++|+|+|.+||||+|.
T Consensus 396 ~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 396 RMWHRCLTSTGQPDFH 411 (411)
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999999993
No 5
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=6.1e-82 Score=668.82 Aligned_cols=344 Identities=22% Similarity=0.337 Sum_probs=315.9
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhc---ccccCcccccccCCCC
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVND---IHKRGGTVLGTSRGGH 229 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~---i~~~GGtiLGSsR~~~ 229 (525)
..||||+||||||||||++||++++.+.+..++.+||||++||+||+++++++|+..+++. |+++|||+|||||++.
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~ 82 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKL 82 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCC
Confidence 3699999999999999999999999997643447999999999999999999999988877 8999999999999863
Q ss_pred --------cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc------------
Q 009804 230 --------DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------ 289 (525)
Q Consensus 230 --------d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------ 289 (525)
++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||++||
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i 162 (416)
T PRK14072 83 KSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYI 162 (416)
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------hhhHHHHHHhhh-----cCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCc
Q 009804 290 ----------------------------LTWFIAMYATLA-----SRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGH 336 (525)
Q Consensus 290 ----------------------------~sG~IAl~aaLA-----s~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~ 336 (525)
+|||||+++||| + +||+|||||.||+++ .++++|++++++++|
T Consensus 163 ~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~~~ 238 (416)
T PRK14072 163 ATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRYGY 238 (416)
T ss_pred HHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhCCC
Confidence 999999999999 6 799999999999988 899999999988999
Q ss_pred EEEEEecCCCC---cchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCC--CCcch
Q 009804 337 MVIVIAEGAGQ---DLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVP--SNASD 411 (525)
Q Consensus 337 ~VIVVAEGa~~---~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~--psa~D 411 (525)
+|||||||+.. .++.+. ...+|++||+++++++++|+++|+++++. .+|+++|||+|||++ ||++|
T Consensus 239 ~ivvVaEG~~~~~g~~i~e~---~~~~D~~gh~~l~g~~~~La~~i~~~~g~------~~R~~~LG~~QRgg~~~ps~~D 309 (416)
T PRK14072 239 CVVVVSEGIRDADGKFIAEA---GLAEDAFGHAQLGGVAPVLANLIKEKLGK------KVHWAVLDYLQRAARHIASKTD 309 (416)
T ss_pred eEEEEecCcccccccchhcc---ccccCCCCCcccccHHHHHHHHHHHHhCC------eEEEEeCChhhhCCCCCCCHHH
Confidence 99999999953 222221 22469999999999999999999998873 357899999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEEEechhHHhhhcCcCCcchHHHHHHHhccCCCCCcCcccccc
Q 009804 412 NVYCTLLAQSCVHGAMAGYTGYTSGLVNG-------RQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIE 484 (525)
Q Consensus 412 r~~a~~LG~~AV~~a~aG~tg~mVgi~n~-------~~~~vPL~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~~~~ 484 (525)
|++|++||..||+++++|++|+||+++|+ ++..+||+++++.+|++ +++|++.+++++
T Consensus 310 r~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v---------------~~~~i~~~~~~v 374 (416)
T PRK14072 310 VEEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKM---------------PPEFINEDGNGI 374 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcC---------------CHHHHhcCCCCc
Confidence 99999999999999999999999999998 89999999999988888 778999999999
Q ss_pred hHHHHHHhhhhhccCCCCCCCCCCCCCcccch-hhhhhhhhC
Q 009804 485 DKKEEELLTQIVNEDKKEEELPTKIPDISTED-NLVKKEIAA 525 (525)
Q Consensus 485 ~~~~~~~~~pl~~g~~~~~~~~~g~p~~~~~~-~~~~~~~~~ 525 (525)
++++.+|++|||+||.+++| .||||+|+++. ..++|+|++
T Consensus 375 ~~~~~~y~~pli~ge~~~~~-~~~lp~~~~~~~~~~~~~~~~ 415 (416)
T PRK14072 375 TEAFRRYLRPLIQGEPYPPY-KNGLPDYVRLKNVLVPKKLPA 415 (416)
T ss_pred CHHHHHHHHHHhCCCCCCcc-cCCCcchhhhccccccccCCC
Confidence 99999999999999999999 99999999996 778887764
No 6
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=2.7e-76 Score=619.82 Aligned_cols=313 Identities=25% Similarity=0.417 Sum_probs=282.2
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChh--hh-hcccccCcccccccCCCC
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPK--GV-NDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~--~v-~~i~~~GGtiLGSsR~~~ 229 (525)
.+||||+||||+|||||++||++++.+...+.+.+||||++||+||+++++++|++. .+ +.|+++|||+|||||+++
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~ 82 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKL 82 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCc
Confidence 359999999999999999999999988654344699999999999999999999986 44 459999999999999753
Q ss_pred -----------------cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc---
Q 009804 230 -----------------DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--- 289 (525)
Q Consensus 230 -----------------d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--- 289 (525)
++++++++|++++||+||+||||||+++|++|+++++++|+.|+||||||||||||++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~ 162 (403)
T PRK06555 83 TNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSL 162 (403)
T ss_pred cccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCc
Confidence 378999999999999999999999999999999999999889999999999999999999
Q ss_pred -----------------------------------hhhHHHHHHhhhc-------------------CCccEEEcCCCCC
Q 009804 290 -----------------------------------LTWFIAMYATLAS-------------------RDVDCCLIPESPF 315 (525)
Q Consensus 290 -----------------------------------~sG~IAl~aaLAs-------------------~~ad~iLIPE~pf 315 (525)
+|||||++++||+ .+||+|||||+||
T Consensus 163 Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~ 242 (403)
T PRK06555 163 GAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAF 242 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCC
Confidence 9999999999993 4799999999999
Q ss_pred CccchhhHHHHHHHHHHcCCcEEEEEecCCCCcchhHHhhh---hccccccCCccchh--HHHHHHHHHHHHhCCCCcee
Q 009804 316 YLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRS---ATQQDASGNKLLQD--VGLWLSQKIKDHFAKEKKMP 390 (525)
Q Consensus 316 ~leg~~~lle~I~~rl~~~g~~VIVVAEGa~~~~~~~~~~~---~~~~DasGn~~L~d--ig~~La~~Ik~~~~~~~~~~ 390 (525)
+++ .+++.|++++++++|+|||||||+.+.+..+.+.. ..++|+|||.+|++ ++.+|+++|+++++.+
T Consensus 243 ~~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e---- 315 (403)
T PRK06555 243 DLE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE---- 315 (403)
T ss_pred CHH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC----
Confidence 998 79999999998899999999999987655443321 12589999999987 6899999999988742
Q ss_pred eEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEE---ECCeEEEechhHHhhhcCcCCcchHHHHHH
Q 009804 391 INLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGL---VNGRQTYIPFYRIIEKQHHVVITDRMWARL 467 (525)
Q Consensus 391 ~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi---~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~ 467 (525)
.+|+++|||+|||++|+++||.+|++||..||+++++|++| ||++ +|++++++||+++.. .|+++++.+||+++
T Consensus 316 -~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~~~ 392 (403)
T PRK06555 316 -KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFTEL 392 (403)
T ss_pred -ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHHHH
Confidence 14789999999999999999999999999999999999999 6788 799999999999987 48899999999999
Q ss_pred HhccCCCC
Q 009804 468 LSSTNQPS 475 (525)
Q Consensus 468 l~~tgqp~ 475 (525)
|.+||||.
T Consensus 393 ~~~~~q~~ 400 (403)
T PRK06555 393 LDEIGQPY 400 (403)
T ss_pred HHhhCCCC
Confidence 99999996
No 7
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.3e-71 Score=578.78 Aligned_cols=295 Identities=27% Similarity=0.391 Sum_probs=267.2
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccC--CeEeCChhhhhcccccCcccccccCC-C
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAK--NTIALTPKGVNDIHKRGGTVLGTSRG-G 228 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~--~~i~Lt~~~v~~i~~~GGtiLGSsR~-~ 228 (525)
...||||+||||+|||||++||++++.+...++ .+||||++||+||+++ ++++|++++|++|+++|||+|||||. .
T Consensus 3 ~~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~ 81 (360)
T PRK14071 3 EKKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGD 81 (360)
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCC
Confidence 357999999999999999999999999976456 4999999999999999 89999999999999999999999973 1
Q ss_pred ------------CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------
Q 009804 229 ------------HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------- 289 (525)
Q Consensus 229 ------------~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------- 289 (525)
+++++++++|++++||+||+||||||+++|++|++. ..|+||||||||||||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~T 156 (360)
T PRK14071 82 PFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDT 156 (360)
T ss_pred ccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhH
Confidence 246899999999999999999999999999999863 25789999999999999999
Q ss_pred ------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEE
Q 009804 290 ------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMV 338 (525)
Q Consensus 290 ------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~V 338 (525)
+|||||++++||+ +||+|||||.||+++ +|+++|++|+++ ++|+|
T Consensus 157 A~~~~~~~id~i~~ta~s~~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 157 AVNIATEALDRLHFTAASHNRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHHhhhcccCCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 9999999999999 899999999999988 899999999987 79999
Q ss_pred EEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHH
Q 009804 339 IVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLL 418 (525)
Q Consensus 339 IVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~L 418 (525)
||||||+....- +. ..++|++||+++++++++|+++|+++++.+ +|+..|||+|||+.|+++||.+|++|
T Consensus 233 ivvsEG~~~~~g-~~---~~~~d~~g~~~~~~~~~~l~~~i~~~~g~~------~r~~~lG~~qRgg~ps~~Dr~~a~~l 302 (360)
T PRK14071 233 VVVSEAVRTEEG-EQ---VTKTQALGEDRYGGIGQYLAEQIAERTGAE------TRVTVLGHIQRGGIPSPRDRLLASAF 302 (360)
T ss_pred EEEcCCCccccc-cc---ccccccccccccCcHHHHHHHHHHHhcCCC------eeEEecChhhcCCCCChHHHHHHHHH
Confidence 999999964311 11 123899999999999999999999988643 36778999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEECCeEEEechhHHhhhcCcCCcchHHHHH
Q 009804 419 AQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWAR 466 (525)
Q Consensus 419 G~~AV~~a~aG~tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~ 466 (525)
|..||+++++|++|+||+++++++.++||+++++.+|.+++++.+|.-
T Consensus 303 G~~Av~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~ 350 (360)
T PRK14071 303 GVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKT 350 (360)
T ss_pred HHHHHHHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHH
Confidence 999999999999999999999999999999999988999987777764
No 8
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=2.2e-70 Score=564.37 Aligned_cols=279 Identities=32% Similarity=0.496 Sum_probs=255.7
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeC-ChhhhhcccccCcccccccCCCC----
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIAL-TPKGVNDIHKRGGTVLGTSRGGH---- 229 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~L-t~~~v~~i~~~GGtiLGSsR~~~---- 229 (525)
|||||||||||||||++||++++.+.+.++ .+||||++||+||+++++++| +|++++.|+++|||+|||||+++
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~g-~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcCC-ceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 699999999999999999999998875456 499999999999999999999 99999999999999999999852
Q ss_pred --cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc------------------
Q 009804 230 --DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------ 289 (525)
Q Consensus 230 --d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------ 289 (525)
++++++++|++++||+||+||||||+++|++|++ .+ ++||||||||||||++||
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD----KG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh----cC--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999986 25 789999999999999999
Q ss_pred -------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcc
Q 009804 290 -------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDL 349 (525)
Q Consensus 290 -------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~ 349 (525)
+|||||+++|||+ +||+|||||+||+++ +|+++|++|+++ ++|+|||||||+....
T Consensus 154 i~~ta~S~~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~~ 229 (324)
T TIGR02483 154 LHTTAESHHRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPKG 229 (324)
T ss_pred HHHHHhhcCCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCccccc
Confidence 9999999999999 899999999999988 899999999988 7999999999997543
Q ss_pred hhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009804 350 LAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAG 429 (525)
Q Consensus 350 ~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG 429 (525)
.... .....+|+|||+++++++.+|+++|+++++. .+|..+|||+|||+.|+++||.+|++||..||+++++|
T Consensus 230 ~~~~-~~~~~~d~~gh~~~~~~~~~l~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 302 (324)
T TIGR02483 230 GEMV-VQEGVKDAFGHVRLGGIGNWLAEEIERRTGI------ETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEG 302 (324)
T ss_pred cchh-ccccccccccCcccCcHHHHHHHHHHHhcCC------cceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 3221 1234589999999999999999999998764 34788999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEEEechhHHh
Q 009804 430 YTGYTSGLVNGRQTYIPFYRII 451 (525)
Q Consensus 430 ~tg~mVgi~n~~~~~vPL~~v~ 451 (525)
++|+||++++++++++||++++
T Consensus 303 ~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 303 QFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred CCCeEEEEECCEEEEeeHHHhC
Confidence 9999999999999999999863
No 9
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=1.1e-69 Score=562.22 Aligned_cols=288 Identities=27% Similarity=0.387 Sum_probs=263.9
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC----
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH---- 229 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~---- 229 (525)
+||||+||||+|||||++||++++.+.+ ++ .+||||++||+||+++++++|+++.++.|+++|||+|||||+++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-EG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999999975 56 69999999999999999999999999999999999999999864
Q ss_pred -cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804 230 -DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------- 289 (525)
Q Consensus 230 -d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------- 289 (525)
++++++++|++++||+||+||||||+++|++|++++++++.+|+||||||||||||++||
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804 290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL 350 (525)
Q Consensus 290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~ 350 (525)
+|||||++++||+ +||+|||||.||+++....+++.|++|+++ ++|+|||||||+.+..
T Consensus 159 ~~~a~s~~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~~- 236 (338)
T cd00363 159 RDTASSHQRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFI- 236 (338)
T ss_pred HHhcccCCCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcccc-
Confidence 9999999999999 799999999999444445899999999887 7999999999996421
Q ss_pred hHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009804 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY 430 (525)
Q Consensus 351 ~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~ 430 (525)
|+. ....+|+++|+++++. .+|+..|||+|||++|+++||.+|++||..||+++++|+
T Consensus 237 -------------~~~---~~~~~l~~~i~~~~~~------~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~ 294 (338)
T cd00363 237 -------------PKP---ITEKLLAKLVEERLGF------DTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGT 294 (338)
T ss_pred -------------ccC---chHHHHHHHHHHHcCC------ceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCC
Confidence 111 1257899999998763 357889999999999999999999999999999999999
Q ss_pred CceEEEEECC---eEEEechhHHhhhcCc--CCcchHHHHHH
Q 009804 431 TGYTSGLVNG---RQTYIPFYRIIEKQHH--VVITDRMWARL 467 (525)
Q Consensus 431 tg~mVgi~n~---~~~~vPL~~v~~~~k~--v~~~~~~w~~~ 467 (525)
||+|++++|+ ++.++||+++++.+|+ |+++++||..+
T Consensus 295 tg~mv~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 295 GGTPVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred CCcEEEEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 9999999999 9999999999999999 68999999764
No 10
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=1.3e-68 Score=549.64 Aligned_cols=270 Identities=30% Similarity=0.428 Sum_probs=246.8
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-----
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG----- 228 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~----- 228 (525)
.||||+||||+|||||++||++++.+.+ ++ .+||||++||+||+++++++|+++.++.|+++|||+|||||+.
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA-EG-LEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 4899999999999999999999999975 56 5999999999999999999999999999999999999999984
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------- 289 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------- 289 (525)
+++++++++|++++||+||+||||||+++|++|+++ + ++||||||||||||++||
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~----~--i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH----G--FPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc----C--CCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 257999999999999999999999999999999885 4 789999999999999999
Q ss_pred ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804 290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL 350 (525)
Q Consensus 290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~ 350 (525)
+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|+|||||||+..
T Consensus 153 ~~ta~s~~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~--- 225 (317)
T cd00763 153 RDTSSSHQRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD--- 225 (317)
T ss_pred HHHHhcCCCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC---
Confidence 9999999999999 799999999999988 899999999987 79999999999852
Q ss_pred hHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009804 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY 430 (525)
Q Consensus 351 ~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~ 430 (525)
...|+++|+++++.+ +|+.+|||+|||++|+++||.+|++||+.||+++++|+
T Consensus 226 ---------------------~~~l~~~l~~~~g~~------~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~ 278 (317)
T cd00763 226 ---------------------VDELAKEIEEATGFE------TRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGK 278 (317)
T ss_pred ---------------------HHHHHHHHHHHhCCC------cceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCC
Confidence 134778888877643 36788999999999999999999999999999999999
Q ss_pred CceEEEEECCeEEEechhHHhhhcCcCCcchHHHHHHH
Q 009804 431 TGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLL 468 (525)
Q Consensus 431 tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~l 468 (525)
+|+||+++++++.++||+++++.+|++++ .|.++.
T Consensus 279 ~~~mv~~~~~~~~~~pl~~~~~~~k~~~~---~~~~~~ 313 (317)
T cd00763 279 GGLAVGIQNEQLVHHDIIDAIENMKPFKK---DWLALA 313 (317)
T ss_pred CCeEEEEECCEEEEecHHHHhhCCCCCCH---HHHHHH
Confidence 99999999999999999999998877755 555553
No 11
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=3.2e-69 Score=585.38 Aligned_cols=404 Identities=21% Similarity=0.282 Sum_probs=323.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-----ccccccccCCccceeccCCCeEEEEEcCC
Q 009804 88 LSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-----RGTHFRRAGPRQKVYFESDEVYACIVTCG 162 (525)
Q Consensus 88 l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-----~~~~f~~aGpr~~~~f~~~~~~iaIvtsG 162 (525)
...|.|.||...+. ....++......+..+..+..+.+.|| +...|.+.-.... .+..+||||+|||
T Consensus 5 r~~~~p~lp~~l~~-----~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~---~~~~~rIgIl~sG 76 (539)
T TIGR02477 5 RLQYVPKLPKVLQG-----DTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFEPGEASPD---EHQPLKIGVILSG 76 (539)
T ss_pred HhhCCCCCChHHcC-----CCcceEEeccCcccCCCCHHHHHHhChHhhCCccEEEecCCCCcc---cccceEEEEECCC
Confidence 45799999988643 223445566777777777777777787 5566765322211 1556899999999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcc-cccccCCCC----cHHHHHHH
Q 009804 163 GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGT-VLGTSRGGH----DTSKIVDS 237 (525)
Q Consensus 163 G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGt-iLGSsR~~~----d~~~iv~~ 237 (525)
|+|||||+||+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||||++. ++++++++
T Consensus 77 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~ 156 (539)
T TIGR02477 77 GQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTT 156 (539)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999987666789999999999999999999999999999999996 999999863 68999999
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--------------------------
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL-------------------------- 289 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD-------------------------- 289 (525)
|++++||+||+||||||+++|+.|+++++++|++|+||||||||||||++ ||
T Consensus 157 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~ 236 (539)
T TIGR02477 157 AKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSA 236 (539)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999984 88
Q ss_pred ------------hhhHHHHHHhhhcCCccEEEcCCCCC----Cccc-hhhHHHHHHHHHHc-CCcEEEEEecCCCC----
Q 009804 290 ------------LTWFIAMYATLASRDVDCCLIPESPF----YLEG-HGGLFEYIETRLKE-NGHMVIVIAEGAGQ---- 347 (525)
Q Consensus 290 ------------~sG~IAl~aaLAs~~ad~iLIPE~pf----~leg-~~~lle~I~~rl~~-~g~~VIVVAEGa~~---- 347 (525)
+|||||++||||+ +||+|||||+++ +|+. .+.+++.|.+|..+ ++|+|||||||+..
T Consensus 237 ~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe 315 (539)
T TIGR02477 237 KKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPE 315 (539)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcch
Confidence 9999999999999 899999999987 5542 44666777777766 69999999999954
Q ss_pred ----------------------cchhHHhhh---------------h--ccccccCCccchhH--HHHHHHHHHHHhCCC
Q 009804 348 ----------------------DLLAESIRS---------------A--TQQDASGNKLLQDV--GLWLSQKIKDHFAKE 386 (525)
Q Consensus 348 ----------------------~~~~~~~~~---------------~--~~~DasGn~~L~di--g~~La~~Ik~~~~~~ 386 (525)
+++.+.++. + .++|++||++++++ +++|+++++++++..
T Consensus 316 ~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~ 395 (539)
T TIGR02477 316 VQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKR 395 (539)
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhh
Confidence 111100010 1 25899999999998 889999998887622
Q ss_pred C-ceeeEeeEe----CCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEechhHHhhhc
Q 009804 387 K-KMPINLKYI----DPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIPFYRIIEKQ 454 (525)
Q Consensus 387 ~-~~~~~lkyi----~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vPL~~v~~~~ 454 (525)
. ...+..|++ .+||+|||+.||.+|+.||+.||+.|++++++|+||+|++++|.. +..+||.++++.+
T Consensus 396 ~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e 475 (539)
T TIGR02477 396 KKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNME 475 (539)
T ss_pred hccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhChh
Confidence 1 112344565 679999999999999999999999999999999999999999832 2569999999977
Q ss_pred CcCCcchHHHHHHH-hccCCC--CCcCcccccchHHHHHHhhhh-hccCC
Q 009804 455 HHVVITDRMWARLL-SSTNQP--SFMNHKDVIEDKKEEELLTQI-VNEDK 500 (525)
Q Consensus 455 k~v~~~~~~w~~~l-~~tgqp--~f~~~~~~~~~~~~~~~~~pl-~~g~~ 500 (525)
|+-..........+ +..|+| -|....+.|.-++++++++|+ +.|+.
T Consensus 476 ~~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~ 525 (539)
T TIGR02477 476 RRHGEMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPE 525 (539)
T ss_pred hhCCCCCccceeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCcc
Confidence 54332222222222 223332 234567889999999999999 77775
No 12
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=1.1e-68 Score=580.98 Aligned_cols=403 Identities=20% Similarity=0.243 Sum_probs=331.1
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-----ccccccccCCccceeccCCCeEEEEEcCC
Q 009804 88 LSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-----RGTHFRRAGPRQKVYFESDEVYACIVTCG 162 (525)
Q Consensus 88 l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-----~~~~f~~aGpr~~~~f~~~~~~iaIvtsG 162 (525)
...|.|.||..+.. .+..++..+..++..+.+...+++.|| +.++|.++.... -.+..+||||++||
T Consensus 10 r~~~~p~lp~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~~~---~~~~~~~IgIl~SG 81 (550)
T cd00765 10 RINYTPKLPSVLKG-----DFNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQDAP---SSAPKLKIGIVLSG 81 (550)
T ss_pred HHhcCCCCChhhcC-----CccceEEeecCcccccCCHHHHHHhChhhhCCcceEEeecCCcc---cCCCCCEEEEECCC
Confidence 45899999998743 234567778888888888878887887 667787754321 12566899999999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcc-cccccCCC----CcHHHHHHH
Q 009804 163 GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGT-VLGTSRGG----HDTSKIVDS 237 (525)
Q Consensus 163 G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGt-iLGSsR~~----~d~~~iv~~ 237 (525)
|+|||||++|+++++.+...+.+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++
T Consensus 82 G~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~ 161 (550)
T cd00765 82 GQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEET 161 (550)
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHH
Confidence 9999999999999999876656689999999999999999999999999999999999 99999986 368999999
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC--c--------------------------
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP--L-------------------------- 289 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt--D-------------------------- 289 (525)
|++++||+||+||||||+++|+.|+++++++|++|+||||||||||||+++ |
T Consensus 162 l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~ 241 (550)
T cd00765 162 AKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARST 241 (550)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999986 6
Q ss_pred ------------hhhHHHHHHhhhcCCccEEEcCCCCC----Cccc-hhhHHHHHHHHHHc-CCcEEEEEecCCCCcchh
Q 009804 290 ------------LTWFIAMYATLASRDVDCCLIPESPF----YLEG-HGGLFEYIETRLKE-NGHMVIVIAEGAGQDLLA 351 (525)
Q Consensus 290 ------------~sG~IAl~aaLAs~~ad~iLIPE~pf----~leg-~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~~ 351 (525)
+|||||++||||+ +||+|||||++| +|+. .+.+++.|++|..+ ++|+||||+||+.+.+..
T Consensus 242 ~~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe 320 (550)
T cd00765 242 GKYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPE 320 (550)
T ss_pred CCcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 9999999999999 899999999999 4331 22445556666554 689999999998761100
Q ss_pred ------------------------------------------------HHhhh--hccccccCCccchhH--HHHHHHHH
Q 009804 352 ------------------------------------------------ESIRS--ATQQDASGNKLLQDV--GLWLSQKI 379 (525)
Q Consensus 352 ------------------------------------------------~~~~~--~~~~DasGn~~L~di--g~~La~~I 379 (525)
+.+.. ..++|++||++++++ +++|+++|
T Consensus 321 ~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV 400 (550)
T cd00765 321 VKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMV 400 (550)
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHH
Confidence 11111 125899999999999 99999999
Q ss_pred HHHhCC-CCc----eeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEech
Q 009804 380 KDHFAK-EKK----MPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIPF 447 (525)
Q Consensus 380 k~~~~~-~~~----~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vPL 447 (525)
+++++. +.+ ..+...+..+||.|||+.||.+|+.||+.||+.|++++++|.||+|++++|-. +..+||
T Consensus 401 ~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl 480 (550)
T cd00765 401 ETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPL 480 (550)
T ss_pred HHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccH
Confidence 988874 221 12333455699999999999999999999999999999999999999999842 355999
Q ss_pred hHHhhhcCcCCcchHHHHHHHhccCCCCC---cCcccccchHHHHHHhhhh-hccC
Q 009804 448 YRIIEKQHHVVITDRMWARLLSSTNQPSF---MNHKDVIEDKKEEELLTQI-VNED 499 (525)
Q Consensus 448 ~~v~~~~k~v~~~~~~w~~~l~~tgqp~f---~~~~~~~~~~~~~~~~~pl-~~g~ 499 (525)
..+++.+|++........+.+-....+.| ....+.|.-++++++++|+ +.|.
T Consensus 481 ~~~mn~e~~~g~~~pvi~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~ 536 (550)
T cd00765 481 TMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGP 536 (550)
T ss_pred HHHhccccccCCcceecccceeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeccCc
Confidence 99999988776554445444433333434 4577889999999999999 7787
No 13
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=4.2e-68 Score=542.31 Aligned_cols=258 Identities=31% Similarity=0.485 Sum_probs=237.0
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-----C
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-----H 229 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-----~ 229 (525)
||||+||||+|||||++||++++.+.. ++ .+|||+++||+||+++++++|+++++++|+++|||+|||||++ +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-HG-FEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999999975 56 5999999999999999999999999999999999999999985 2
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc--------------------
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL-------------------- 289 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD-------------------- 289 (525)
++++++++|++++||+||+||||||+++|++|++++ .++||||||||||||++||
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999863 5789999999999999999
Q ss_pred -----------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcchh
Q 009804 290 -----------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLLA 351 (525)
Q Consensus 290 -----------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~~ 351 (525)
+|||||++++||+ +||+|||||+||+++ +|+++|++|+++ ++|+|||||||+..
T Consensus 154 ~ta~s~~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~---- 225 (301)
T TIGR02482 154 DTATSHERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIV---- 225 (301)
T ss_pred HHhhcCCCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcC----
Confidence 9999999999999 799999999999988 899999999988 79999999999531
Q ss_pred HHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCC
Q 009804 352 ESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYT 431 (525)
Q Consensus 352 ~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~t 431 (525)
| .+..|+++|+++++. .+|+.+|||+|||++|+++||.+|++||..||+++++|++
T Consensus 226 ------------~------~~~~l~~~l~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~ 281 (301)
T TIGR02482 226 ------------G------SAKEVAKKIEEATGI------ETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKG 281 (301)
T ss_pred ------------C------cHHHHHHHHHHhcCC------eeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0 024578888876653 4578899999999999999999999999999999999999
Q ss_pred ceEEEEECCeEEEechhHHh
Q 009804 432 GYTSGLVNGRQTYIPFYRII 451 (525)
Q Consensus 432 g~mVgi~n~~~~~vPL~~v~ 451 (525)
|+||++++++++++||++++
T Consensus 282 ~~mv~~~~~~~~~~p~~~~~ 301 (301)
T TIGR02482 282 GVMIGIQNNKIVTHPIEEAL 301 (301)
T ss_pred CEEEEEECCEEEEeeHHHhC
Confidence 99999999999999999863
No 14
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.9e-68 Score=580.53 Aligned_cols=401 Identities=21% Similarity=0.304 Sum_probs=323.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-----ccccccccCCccceeccCCCeEEEEEcCC
Q 009804 88 LSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-----RGTHFRRAGPRQKVYFESDEVYACIVTCG 162 (525)
Q Consensus 88 l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-----~~~~f~~aGpr~~~~f~~~~~~iaIvtsG 162 (525)
+..|.|.||...+. ....++......++.+.++..+.+.|| +.+.|.++.+.. ...+||||+|||
T Consensus 10 r~~~~p~lp~~l~~-----~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~-----~~~~~IgIl~sG 79 (555)
T PRK07085 10 RLKYRPKLPKLLQN-----DPGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKGSESS-----SKPLKVGVILSG 79 (555)
T ss_pred HHhCCCCCCHHHhC-----CCCCceEeecCCccccCCHHHHHHhChHhhCCccEEEEeCCCCc-----ccceEEEEECCC
Confidence 45789999987732 233556778888888888777777887 667787765432 236899999999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcc-cccccCCC----CcHHHHHHH
Q 009804 163 GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGT-VLGTSRGG----HDTSKIVDS 237 (525)
Q Consensus 163 G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGt-iLGSsR~~----~d~~~iv~~ 237 (525)
|+|||||+||+++++++...+.+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++
T Consensus 80 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~~ 159 (555)
T PRK07085 80 GQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLET 159 (555)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHHH
Confidence 9999999999999998776666789999999999999999999999999999999997 99999986 368999999
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC--c--------------------------
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP--L-------------------------- 289 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt--D-------------------------- 289 (525)
|++++||+||+||||||+++|+.|+|++++++++|+||||||||||||+++ |
T Consensus 160 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s~ 239 (555)
T PRK07085 160 VKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSA 239 (555)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999955 8
Q ss_pred ------------hhhHHHHHHhhhcCCccEEEcCCC----CCCccc-hhhHHHHHHHHHHc-CCcEEEEEecCCCCcc--
Q 009804 290 ------------LTWFIAMYATLASRDVDCCLIPES----PFYLEG-HGGLFEYIETRLKE-NGHMVIVIAEGAGQDL-- 349 (525)
Q Consensus 290 ------------~sG~IAl~aaLAs~~ad~iLIPE~----pf~leg-~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~-- 349 (525)
+|||||++||||+ +||+|||||+ +++|+. .+.+++.|.+|..+ ++|+|||||||+.+.+
T Consensus 240 ~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe 318 (555)
T PRK07085 240 KKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIPE 318 (555)
T ss_pred CCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCch
Confidence 9999999999998 8999999999 566552 22344455556544 6999999999997410
Q ss_pred ----hhH--------------------------Hhhh---------------h--ccccccCCccchhH--HHHHHHHHH
Q 009804 350 ----LAE--------------------------SIRS---------------A--TQQDASGNKLLQDV--GLWLSQKIK 380 (525)
Q Consensus 350 ----~~~--------------------------~~~~---------------~--~~~DasGn~~L~di--g~~La~~Ik 380 (525)
+.| .++. + .++|++||++++++ +++|+++|+
T Consensus 319 ~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV~ 398 (555)
T PRK07085 319 MKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVK 398 (555)
T ss_pred HHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHHH
Confidence 000 0100 1 25899999999998 889999999
Q ss_pred HHhCCCC-----ceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEechh
Q 009804 381 DHFAKEK-----KMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIPFY 448 (525)
Q Consensus 381 ~~~~~~~-----~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vPL~ 448 (525)
++++... ...+..++..+||+|||+.||.+|+.||+.||+.|++++++|+||+|++++|.. ...+||.
T Consensus 399 ~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~ 478 (555)
T PRK07085 399 KELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLT 478 (555)
T ss_pred HHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHH
Confidence 8876411 123455666799999999999999999999999999999999999999999832 2569999
Q ss_pred HHhhhcCcCCcchHHHHHHHhccCCCCC---cCcccccchHHHHHHhhhh-hccC
Q 009804 449 RIIEKQHHVVITDRMWARLLSSTNQPSF---MNHKDVIEDKKEEELLTQI-VNED 499 (525)
Q Consensus 449 ~v~~~~k~v~~~~~~w~~~l~~tgqp~f---~~~~~~~~~~~~~~~~~pl-~~g~ 499 (525)
++++.+|+-..........+-....+.| ......|.-++++++++|+ +.|.
T Consensus 479 ~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~ 533 (555)
T PRK07085 479 MMMNMERRHGKEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGP 533 (555)
T ss_pred HHhcHHhhCCCCCceeeeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCc
Confidence 9999875443322223333322222333 4567889999999999999 8887
No 15
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4.3e-67 Score=538.99 Aligned_cols=270 Identities=30% Similarity=0.436 Sum_probs=246.7
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC----
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH---- 229 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~---- 229 (525)
+||||+||||+|||||++|+++++.+.. ++ .+||||++||+||+++++++|++++++.|.++|||+|||+|+.+
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~-~g-~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS-EG-LEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH-CC-CeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 5899999999999999999999999975 45 59999999999999999999999999999999999999999852
Q ss_pred -cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804 230 -DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------- 289 (525)
Q Consensus 230 -d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------- 289 (525)
++++++++|++++||+||+||||||+++|++|+|+ .++|||||||||||+++||
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999863 5789999999999999999
Q ss_pred ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804 290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL 350 (525)
Q Consensus 290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~ 350 (525)
+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++|+|||||||+.+
T Consensus 154 ~~~a~s~~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~--- 226 (320)
T PRK03202 154 RDTASSHERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMP--- 226 (320)
T ss_pred HHHHhccCCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCC---
Confidence 9999999999999 799999999999988 899999999988 79999999999964
Q ss_pred hHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009804 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY 430 (525)
Q Consensus 351 ~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~ 430 (525)
...|+++|+++++. ++|+++|||+|||++|+++||.+|++||+.||+++++|+
T Consensus 227 ---------------------~~~l~~~i~~~~~~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 279 (320)
T PRK03202 227 ---------------------AEELAKEIEERTGL------ETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGK 279 (320)
T ss_pred ---------------------HHHHHHHHHHHhCC------ceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 12378888887763 358899999999999999999999999999999999999
Q ss_pred CceEEEEECCeEEEechhHHh-hhcCcCCcchHHHHHHH
Q 009804 431 TGYTSGLVNGRQTYIPFYRII-EKQHHVVITDRMWARLL 468 (525)
Q Consensus 431 tg~mVgi~n~~~~~vPL~~v~-~~~k~v~~~~~~w~~~l 468 (525)
+|+||+++++++.++||++++ +++|.+++ .|.++.
T Consensus 280 ~~~~v~~~~~~~~~vpl~~v~~~~~~~~~~---~~~~~~ 315 (320)
T PRK03202 280 GGRMVGIQNNKIVHVPIEEAVENMKHPFDK---DLYELA 315 (320)
T ss_pred CCeEEEEECCEEEEEeHHHHHhcCCCCCCH---HHHHHH
Confidence 999999999999999999999 76666644 455443
No 16
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=8.4e-67 Score=567.36 Aligned_cols=400 Identities=20% Similarity=0.190 Sum_probs=323.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-----ccccccccC-CccceeccCCCeEEEEEcC
Q 009804 88 LSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-----RGTHFRRAG-PRQKVYFESDEVYACIVTC 161 (525)
Q Consensus 88 l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-----~~~~f~~aG-pr~~~~f~~~~~~iaIvts 161 (525)
...|.|.||...+. .++..+..++..+..+..+.+.|| +.+.|.+.. +. ...+..+|||||||
T Consensus 36 r~~~~p~lp~~l~~--------~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~---~~~~~~~~IGIv~s 104 (568)
T PLN02251 36 RIDHALPLPSVLKG--------PFKIVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQADA---LSSDQKLKIGVVLS 104 (568)
T ss_pred HHhCCCCCChhhcC--------ceEEEecCcccccCCHHHHHHhChHhhCCceEEEeeccCcc---ccccccceEEEECc
Confidence 45899999987743 345667778888877777777777 567777632 22 11245589999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcc-cccccCCC----CcHHHHHH
Q 009804 162 GGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGT-VLGTSRGG----HDTSKIVD 236 (525)
Q Consensus 162 GG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGt-iLGSsR~~----~d~~~iv~ 236 (525)
||+|||||+||+++++.+...+++.+||||++||.||+++++++|+++.++.|+++||+ +|||+|++ ++++++++
T Consensus 105 GG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~ 184 (568)
T PLN02251 105 GGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEE 184 (568)
T ss_pred CCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHH
Confidence 99999999999999999976556689999999999999999999999999999999998 99999985 36899999
Q ss_pred HHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc---------------------------
Q 009804 237 SIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--------------------------- 289 (525)
Q Consensus 237 ~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--------------------------- 289 (525)
+|++++||+||+||||||+++|+.|+|+++++|.+|+||||||||||||+++|
T Consensus 185 ~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S 264 (568)
T PLN02251 185 TATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARS 264 (568)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988
Q ss_pred -------------hhhHHHHHHhhhcCCccEEEcCCCCC----Cccc-hhhHHHHHHHHHHc-CCcEEEEEecCCCCc--
Q 009804 290 -------------LTWFIAMYATLASRDVDCCLIPESPF----YLEG-HGGLFEYIETRLKE-NGHMVIVIAEGAGQD-- 348 (525)
Q Consensus 290 -------------~sG~IAl~aaLAs~~ad~iLIPE~pf----~leg-~~~lle~I~~rl~~-~g~~VIVVAEGa~~~-- 348 (525)
+|||||++||||+ +||+|||||+++ +++. .+.+++.|++|..+ ++|+||||+||+.+.
T Consensus 265 ~~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ip 343 (568)
T PLN02251 265 TGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIP 343 (568)
T ss_pred hCCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCc
Confidence 9999999999999 899999999954 4421 12455566666655 699999999999421
Q ss_pred ----chhH---------------------------------Hhhh--hccccccCCccchh--HHHHHHHHHHHHhCCCC
Q 009804 349 ----LLAE---------------------------------SIRS--ATQQDASGNKLLQD--VGLWLSQKIKDHFAKEK 387 (525)
Q Consensus 349 ----~~~~---------------------------------~~~~--~~~~DasGn~~L~d--ig~~La~~Ik~~~~~~~ 387 (525)
++.+ .+.. ..++|++||+++++ .+++|+++++++++...
T Consensus 344 e~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~rk 423 (568)
T PLN02251 344 EVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRK 423 (568)
T ss_pred hHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhhhc
Confidence 1111 0001 12589999999998 67899999988886421
Q ss_pred -----ceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEechhHHhhhcC
Q 009804 388 -----KMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIPFYRIIEKQH 455 (525)
Q Consensus 388 -----~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vPL~~v~~~~k 455 (525)
...+..++..+||+|||+.||.+|+.||+.||+.|+.++.+|+||+|++++|.. ..-+||..+++.+|
T Consensus 424 ~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn~e~ 503 (568)
T PLN02251 424 QEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDVER 503 (568)
T ss_pred cccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhhhhh
Confidence 112344566799999999999999999999999999999999999999999842 24599999999877
Q ss_pred cCCcchHHHHHHHhccCCCC---CcCcccccchHHHHHHhhhh-hccC
Q 009804 456 HVVITDRMWARLLSSTNQPS---FMNHKDVIEDKKEEELLTQI-VNED 499 (525)
Q Consensus 456 ~v~~~~~~w~~~l~~tgqp~---f~~~~~~~~~~~~~~~~~pl-~~g~ 499 (525)
+-........+.+-....|. |....+.|.-++.+++++|+ +.|.
T Consensus 504 ~~~~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~ 551 (568)
T PLN02251 504 RHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFSGP 551 (568)
T ss_pred hCCCcCccccccccCCCCHHHHHHHHHHHHhhhcCcCcCCCCccccCc
Confidence 65444444444443333333 45577889999999999999 7776
No 17
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=8.6e-67 Score=571.04 Aligned_cols=405 Identities=20% Similarity=0.252 Sum_probs=325.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccc--hhcccCCC-----ccccccc---cCCccceeccCCCeEEE
Q 009804 88 LSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQK--VVVHKDSP-----RGTHFRR---AGPRQKVYFESDEVYAC 157 (525)
Q Consensus 88 l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~--~~~~~~~~-----~~~~f~~---aGpr~~~~f~~~~~~ia 157 (525)
...|.|.||...+.. .++.....++..+... ..+.+.|| +.++|.. +||+.+.++.+..+|||
T Consensus 11 r~~~~p~lp~~l~~~-------~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rIg 83 (610)
T PLN03028 11 RSLYQPELPPCLQGT-------TVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVRVG 83 (610)
T ss_pred HHhCCCCCChhhCCC-------cEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccEEE
Confidence 357899998877531 2345566666666665 45566776 6677775 56999999988889999
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcc-cccccCCC----CcHH
Q 009804 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGT-VLGTSRGG----HDTS 232 (525)
Q Consensus 158 IvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGt-iLGSsR~~----~d~~ 232 (525)
||||||+||||||||+++++.+...+++.+||||++||.||+++++++||++.++.|+++||+ +|||+|.+ ++++
T Consensus 84 Iv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~ 163 (610)
T PLN03028 84 VVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVN 163 (610)
T ss_pred EEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHH
Confidence 999999999999999999999987666689999999999999999999999999999999998 89999975 3589
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc---------------------
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--------------------- 289 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--------------------- 289 (525)
+++++|++++||+||+||||||+++|++|++++++++.+|+||||||||||||+ +||
T Consensus 164 ~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni~~ 243 (610)
T PLN03028 164 AALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCT 243 (610)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 688
Q ss_pred -----------------hhhHHHHHHhhhcCCccEEEcCCCC-CCc---cc-hhhHHHHHHHHHHc-CCcEEEEEecCCC
Q 009804 290 -----------------LTWFIAMYATLASRDVDCCLIPESP-FYL---EG-HGGLFEYIETRLKE-NGHMVIVIAEGAG 346 (525)
Q Consensus 290 -----------------~sG~IAl~aaLAs~~ad~iLIPE~p-f~l---eg-~~~lle~I~~rl~~-~g~~VIVVAEGa~ 346 (525)
+|||||++||||+ +||+|||||+. |+. .. .+.+++.|++|+++ ++|+|||||||+.
T Consensus 244 dA~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGli 322 (610)
T PLN03028 244 DALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGLI 322 (610)
T ss_pred HHHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 9999999999999 79999999864 322 21 24788999999855 7999999999997
Q ss_pred Ccchh------H----------------H---------------hhh--hccccccCCccchh--HHHHHHHHHHHHhCC
Q 009804 347 QDLLA------E----------------S---------------IRS--ATQQDASGNKLLQD--VGLWLSQKIKDHFAK 385 (525)
Q Consensus 347 ~~~~~------~----------------~---------------~~~--~~~~DasGn~~L~d--ig~~La~~Ik~~~~~ 385 (525)
+.+.. | . +.. ...+|++||+++++ .+++|+++++++++.
T Consensus 323 e~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL~~ 402 (610)
T PLN03028 323 ESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNK 402 (610)
T ss_pred ccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHHHH
Confidence 53111 1 0 000 13589999999998 568888888887764
Q ss_pred CCce------eeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEechhHHhh
Q 009804 386 EKKM------PINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIPFYRIIE 452 (525)
Q Consensus 386 ~~~~------~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vPL~~v~~ 452 (525)
+.+. .+....-.+||.|||+.|+.+|+.||+.||+.|++++.+|.||+|++++|.. +..+||..+++
T Consensus 403 r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~m~ 482 (610)
T PLN03028 403 RTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMS 482 (610)
T ss_pred HhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHHhh
Confidence 3221 2222233689999999999999999999999999999999999999999842 34599999998
Q ss_pred hcCcC-C-----cchHHHHHHHh-ccCCC--CCcCcccccchHHHHHHhhhh-hccCC
Q 009804 453 KQHHV-V-----ITDRMWARLLS-STNQP--SFMNHKDVIEDKKEEELLTQI-VNEDK 500 (525)
Q Consensus 453 ~~k~v-~-----~~~~~w~~~l~-~tgqp--~f~~~~~~~~~~~~~~~~~pl-~~g~~ 500 (525)
.+|+- . .......+.+- ..|.| -|....+.|.-++++++++|+ +.|..
T Consensus 483 ~~~~~~~~~~~~~~~p~i~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~ 540 (610)
T PLN03028 483 VKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPG 540 (610)
T ss_pred HHhhcccccccccCCceeeccccCCCcHHHHHHHHHHHHhhccCcCcCCCCccccCCc
Confidence 76554 1 12233333332 23333 245577889999999999999 77763
No 18
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-65 Score=524.25 Aligned_cols=272 Identities=33% Similarity=0.482 Sum_probs=239.1
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC---
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH--- 229 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~--- 229 (525)
.+||||+||||||||||+|||++++++.. ++ .+||||++||+||+++++++|+++++++|+++|||+|||+|+++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~g-~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-EG-LEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-cC-CEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 47999999999999999999999999986 44 79999999999999999999999999999999999999999863
Q ss_pred --cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc------------------
Q 009804 230 --DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------ 289 (525)
Q Consensus 230 --d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------ 289 (525)
..++++++|++++||+|++||||||+++|..|+|++ +++|||||||||||+.+||
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999975 2789999999999999999
Q ss_pred -------------------hhhHHHHHHhhhcCCccEEEcCCCCCCc--cchhhHHHHHHHHHH--cCCcEEEEEecCCC
Q 009804 290 -------------------LTWFIAMYATLASRDVDCCLIPESPFYL--EGHGGLFEYIETRLK--ENGHMVIVIAEGAG 346 (525)
Q Consensus 290 -------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~l--eg~~~lle~I~~rl~--~~g~~VIVVAEGa~ 346 (525)
||||||++||||+ ++|+|+|||.+|++ + +++..++++.+ .+.|+||||+||+.
T Consensus 155 l~dtassh~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~~i~---~~~~~i~~~~~~~gk~~~iIvvaEG~~ 230 (347)
T COG0205 155 LRDTASSHERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADLIIE---ELIAEIKAKREARGKKHAIIVVAEGAI 230 (347)
T ss_pred HHHHHhCcCCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccchHH---HHHHHHHHHHHHhCCCceEEEEccccc
Confidence 9999999999999 79999999999977 5 67777776444 36899999999997
Q ss_pred CcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHH
Q 009804 347 QDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGA 426 (525)
Q Consensus 347 ~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a 426 (525)
..+. .+|+..+..+.++++.. .+++|+..|||+|||++|+++||+||++||..||+++
T Consensus 231 ~~~~-----------~~~~~~~~~i~~~~~~~-----------~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l 288 (347)
T COG0205 231 DQIG-----------ENGAELLAAIEELLALG-----------DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLL 288 (347)
T ss_pred cccc-----------cchhhHHHHHHHHhhhc-----------ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 6422 14554443333333332 0356888999999999999999999999999999999
Q ss_pred HcCCCceEEEEECCeEEEechhHHhhhcCcC
Q 009804 427 MAGYTGYTSGLVNGRQTYIPFYRIIEKQHHV 457 (525)
Q Consensus 427 ~aG~tg~mVgi~n~~~~~vPL~~v~~~~k~v 457 (525)
++|++|+||+++|+++++.|+.+.....+.+
T Consensus 289 ~~g~~~~~v~i~~~~~v~~~~~~~~~~~~~~ 319 (347)
T COG0205 289 LEGKTGYMVGIRNNKIVHVPIDEAVAPLKMV 319 (347)
T ss_pred HcCCCCceEEEeCCeeEeehhHhhhhhhhhh
Confidence 9999999999999999999999988765553
No 19
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=4.4e-64 Score=562.74 Aligned_cols=298 Identities=23% Similarity=0.338 Sum_probs=261.4
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccC--CeEeCChhhhhcccccCcccccccCCCC--
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAK--NTIALTPKGVNDIHKRGGTVLGTSRGGH-- 229 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~--~~i~Lt~~~v~~i~~~GGtiLGSsR~~~-- 229 (525)
+||||+||||||||||++||++++.+.+ ++ .+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~-~g-~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY-VG-CRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 4899999999999999999999999865 56 5999999999999999 9999999999999999999999999863
Q ss_pred ---cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHH-----------------HHHHcCCceeEEEeeccccCCCCCCc
Q 009804 230 ---DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYE-----------------EVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 230 ---d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e-----------------~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
+.++++++|++++||+||+||||||+++|+.|++ +.++++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 4689999999999999999999999999997765 33455667899999999999999999
Q ss_pred -------------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHH
Q 009804 290 -------------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLK 332 (525)
Q Consensus 290 -------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~ 332 (525)
||||||+++|||+ +||+|||||.||+.+..+++++.++++.+
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~~ 237 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSHQRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNRK 237 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccCCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999 79999999999996545577777776544
Q ss_pred c-CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcch
Q 009804 333 E-NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASD 411 (525)
Q Consensus 333 ~-~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~D 411 (525)
. ++|+|||||||+. |+.||+.. ..+|++.|+++++. .+|.++|||+|||++|+++|
T Consensus 238 ~gk~~~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g~------~~R~~~LGh~QRgg~Psa~D 294 (745)
T TIGR02478 238 AGKRKNIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLGL------DTRITVLGHVQRGGAPSAYD 294 (745)
T ss_pred cCCCcEEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcCC------ceEEeecChhhcCCCCCHHH
Confidence 4 6899999999984 34465432 35788888887764 34778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEEEechhHHhhhcCcCCcc--hHHHHHHHhccCCCCCcC
Q 009804 412 NVYCTLLAQSCVHGAMAGYT---GYTSGLVNGRQTYIPFYRIIEKQHHVVIT--DRMWARLLSSTNQPSFMN 478 (525)
Q Consensus 412 r~~a~~LG~~AV~~a~aG~t---g~mVgi~n~~~~~vPL~~v~~~~k~v~~~--~~~w~~~l~~tgqp~f~~ 478 (525)
|.+|++||..||+++++|.+ ++||+++++++.++||+++++.+|.|+.. ...|.+.+...|. +|..
T Consensus 295 r~la~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~r~~-~f~~ 365 (745)
T TIGR02478 295 RILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRLRGR-EFVE 365 (745)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHhcCH-HHHH
Confidence 99999999999999999997 99999999999999999999999998654 4678888888765 6654
No 20
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.6e-64 Score=578.23 Aligned_cols=413 Identities=17% Similarity=0.195 Sum_probs=324.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccc--hhcccCCC-----ccccccccCCccceeccCCCeEEEEEc
Q 009804 88 LSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQK--VVVHKDSP-----RGTHFRRAGPRQKVYFESDEVYACIVT 160 (525)
Q Consensus 88 l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~--~~~~~~~~-----~~~~f~~aGpr~~~~f~~~~~~iaIvt 160 (525)
...|.|.||..++. .++.....++..+... ..+++.|| +.+.|.++.....-+-....+||||||
T Consensus 38 r~~~~p~lp~~l~~--------~~~~~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~~~~~~~~~~~krIGILt 109 (1328)
T PTZ00468 38 RRRWEPCLPHILRS--------PLSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKKFPARRIGVVL 109 (1328)
T ss_pred HHhcCCCCChHhcC--------ceEEeecCCcccccCcchHHHHHhCccccCCcceEEeecCCCccccccccCCEEEEEC
Confidence 45889999887743 2445566777777766 56666776 667777642200111111347999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcc-cccccCCC----CcHHHHH
Q 009804 161 CGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGT-VLGTSRGG----HDTSKIV 235 (525)
Q Consensus 161 sGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGt-iLGSsR~~----~d~~~iv 235 (525)
|||+|||||+||+++++.+...+.+.+||||++||.||+++++++|+++.|+.|+++||+ +|||+|++ +++++++
T Consensus 110 SGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~l 189 (1328)
T PTZ00468 110 SGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRASL 189 (1328)
T ss_pred cCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHHH
Confidence 999999999999999999875555679999999999999999999999999999999997 99999986 3589999
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc------------------------
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL------------------------ 289 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD------------------------ 289 (525)
++|++++||+||+||||||+++|.+|+++++++|++++||||||||||||++ ||
T Consensus 190 e~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A~ 269 (1328)
T PTZ00468 190 EICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIK 269 (1328)
T ss_pred HHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999996 77
Q ss_pred --------------hhhHHHHHHhhhcCCccEEEcCCCCCCccc-----hhhHHHHHHHHHHc-CCcEEEEEecCCCCc-
Q 009804 290 --------------LTWFIAMYATLASRDVDCCLIPESPFYLEG-----HGGLFEYIETRLKE-NGHMVIVIAEGAGQD- 348 (525)
Q Consensus 290 --------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg-----~~~lle~I~~rl~~-~g~~VIVVAEGa~~~- 348 (525)
+|||||++||||+ +||+|||||++++-+. .+.+++.|.+|.+. ++|+||||+||+.+.
T Consensus 270 S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGliefI 348 (1328)
T PTZ00468 270 TEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEFI 348 (1328)
T ss_pred hcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCccccc
Confidence 9999999999999 8999999999988321 22445556666555 689999999999731
Q ss_pred ---------------------chh-----H----------Hhhhh--ccccccCCccchhHH--HHHHHHHHHHhCCC--
Q 009804 349 ---------------------LLA-----E----------SIRSA--TQQDASGNKLLQDVG--LWLSQKIKDHFAKE-- 386 (525)
Q Consensus 349 ---------------------~~~-----~----------~~~~~--~~~DasGn~~L~dig--~~La~~Ik~~~~~~-- 386 (525)
++. + .+..+ .++|++||+++++|+ ++|+++|++++...
T Consensus 349 pe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~~~~ 428 (1328)
T PTZ00468 349 PEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVKK 428 (1328)
T ss_pred cHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHHhhc
Confidence 111 0 00111 358999999999987 89999998887321
Q ss_pred -C-ceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEechhHHhhhcCcC
Q 009804 387 -K-KMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIPFYRIIEKQHHV 457 (525)
Q Consensus 387 -~-~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vPL~~v~~~~k~v 457 (525)
. .+.+..| .+||+|||+.|+.+|+.||+.||+.|++++.+|+||+|++++|.+ +..+||..+++.+++-
T Consensus 429 ~~~~f~~k~H--flGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~E~r~ 506 (1328)
T PTZ00468 429 DYILDNVKTH--YFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNIELRK 506 (1328)
T ss_pred ccccCCceEe--ecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhHHhhC
Confidence 1 1123334 599999999999999999999999999999999999999999853 2459999999987654
Q ss_pred CcchHHHHHHHhccCCCCC---cCcccccchHHHHHHhhhh-hccCC--CCCCCCCCCCCc
Q 009804 458 VITDRMWARLLSSTNQPSF---MNHKDVIEDKKEEELLTQI-VNEDK--KEEELPTKIPDI 512 (525)
Q Consensus 458 ~~~~~~w~~~l~~tgqp~f---~~~~~~~~~~~~~~~~~pl-~~g~~--~~~~~~~g~p~~ 512 (525)
........+.+-....+.| ....+.|..++++++++|+ +.|+. .++| -...|..
T Consensus 507 g~~~pvI~k~~V~l~g~~f~~~~~~r~~w~~~d~Y~~pGPiQ~~gp~~~~~~~-~~~~~~~ 566 (1328)
T PTZ00468 507 GKSVPVIKKYLVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNSGITNY-MISPPRV 566 (1328)
T ss_pred CCccceeeecccCCCcHHHHHHHHHHHHhhhcCcccCCCCeeeccCcccCcce-eccCchH
Confidence 4333334433333333333 4467889999999999999 77876 5667 4444443
No 21
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.6e-63 Score=556.67 Aligned_cols=300 Identities=20% Similarity=0.302 Sum_probs=257.4
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccC--CeEeCChhhhhcccccCcccccccCCCC
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAK--NTIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~--~~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
.++||||+||||||||||++||++|+.+.. +| .+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~-~g-~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY-VG-AKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH-CC-CEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 457999999999999999999999999875 55 6999999999999998 7999999999999999999999999863
Q ss_pred -----cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHH-----------------HHHHHcCCceeEEEeeccccCCCCC
Q 009804 230 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIY-----------------EEVRRRGLKVVVAGIPKTIDNDIPV 287 (525)
Q Consensus 230 -----d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~-----------------e~~~~~g~~i~VIgIPKTIDNDI~g 287 (525)
++.+++++|++++||+||+||||||+++|+.|. ++.++++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 578999999999999999999999999999764 3344556678999999999999999
Q ss_pred Cc-------------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHH
Q 009804 288 PL-------------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETR 330 (525)
Q Consensus 288 tD-------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~r 330 (525)
|| ||||||+++|||+ +||+|||||.||+.+..+.+++.++++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh~R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~~ 238 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSHQRTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSEH 238 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHHH
Confidence 99 9999999999999 799999999999932233566666655
Q ss_pred HHc-CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCc
Q 009804 331 LKE-NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNA 409 (525)
Q Consensus 331 l~~-~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa 409 (525)
.+. ++++|||||||+.+ ..|+... +..|++.|+++++.+ +|..+|||+|||+.|++
T Consensus 239 ~~~gk~~~iIVVaEGa~d--------------~~g~~i~---~~~l~~~l~~~~g~d------~R~t~LGh~QRGG~Psa 295 (762)
T cd00764 239 RSRGKRLNIIIVAEGAID--------------DQLKPIT---SEDVKDLVVERLGLD------TRVTTLGHVQRGGTPSA 295 (762)
T ss_pred HhcCCCcEEEEEeCCCcc--------------ccCCCcc---HHHHHHHHHHhcCCC------eeEeecChhhcCCCCCH
Confidence 444 58999999999952 3344332 357888888877643 47789999999999999
Q ss_pred chHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEEEechhHHhhhcCcCC--cchHHHHHHHhccCCCCCcC
Q 009804 410 SDNVYCTLLAQSCVHGAMAGYT---GYTSGLVNGRQTYIPFYRIIEKQHHVV--ITDRMWARLLSSTNQPSFMN 478 (525)
Q Consensus 410 ~Dr~~a~~LG~~AV~~a~aG~t---g~mVgi~n~~~~~vPL~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~ 478 (525)
+||++|++||..||+++++|.+ ++||+++|++++++||.++++..|.|. .+...|.+.+...+. +|..
T Consensus 296 ~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~lr~~-~f~~ 368 (762)
T cd00764 296 FDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAALRGK-SFDK 368 (762)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHhcch-hHHH
Confidence 9999999999999999999986 899999999999999999999988874 355677777777654 5643
No 22
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.7e-62 Score=549.89 Aligned_cols=302 Identities=20% Similarity=0.270 Sum_probs=258.0
Q ss_pred ccCCccceec-cCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccC
Q 009804 140 RAGPRQKVYF-ESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRG 218 (525)
Q Consensus 140 ~aGpr~~~~f-~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~G 218 (525)
.+.|+....+ ..+++||||+||||||||||++||++++.+.. ++ .+||||++||+||+++++.+|+|.+|++|+++|
T Consensus 375 ~~~~~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~-~g-~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~G 452 (745)
T TIGR02478 375 IPDQDKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA-RG-HTVIAIHNGFSGLARGDVRELTWSDVEGWVGEG 452 (745)
T ss_pred ccCCccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh-CC-CEEEEEecChhhhccCCeecCCHHHHHHHHhcC
Confidence 4445544444 45568999999999999999999999998865 55 699999999999999999999999999999999
Q ss_pred cccccccCCC--CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCc------
Q 009804 219 GTVLGTSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPL------ 289 (525)
Q Consensus 219 GtiLGSsR~~--~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD------ 289 (525)
||+|||+|+. +++++++++|++++||+||+||||||+++|.+|+++..++ ++.|+||||||||||||++||
T Consensus 453 Gt~LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~Gfd 532 (745)
T TIGR02478 453 GSELGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSD 532 (745)
T ss_pred CcccccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHH
Confidence 9999999985 4799999999999999999999999999999999985544 367999999999999999999
Q ss_pred --------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc--CC
Q 009804 290 --------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE--NG 335 (525)
Q Consensus 290 --------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~--~g 335 (525)
+|||||+++|||+ +||+|||||++|++++..+.++++++|++. +.
T Consensus 533 TA~~~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~ 611 (745)
T TIGR02478 533 TALNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRA 611 (745)
T ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999 799999999999998433334477777776 37
Q ss_pred cEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHH
Q 009804 336 HMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYC 415 (525)
Q Consensus 336 ~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a 415 (525)
+.+||++||+...+. +..|++.|++..+. + +.+|+++|||+|||+.|+++||++|
T Consensus 612 ~~iiv~~Eg~~~~~~---------------------~~~l~~~i~~e~~~--~--~~~R~~~LG~~QRgg~ps~~Dr~~a 666 (745)
T TIGR02478 612 GKLILRNENASKNYT---------------------TDFIARIISEEAKG--R--FDARTAVLGHMQQGGSPSPFDRNRA 666 (745)
T ss_pred ceEEEEeCCCccCCC---------------------HHHHHHHHHHHhcC--C--CceEeccCCccccCCCCCHHHHHHH
Confidence 899999999853221 34577777655331 1 3468999999999999999999999
Q ss_pred HHHHHHHHHHHHcC------------CCceEEEEECCeEEEechhHHhhhc---CcCCcchHHHHHHHh
Q 009804 416 TLLAQSCVHGAMAG------------YTGYTSGLVNGRQTYIPFYRIIEKQ---HHVVITDRMWARLLS 469 (525)
Q Consensus 416 ~~LG~~AV~~a~aG------------~tg~mVgi~n~~~~~vPL~~v~~~~---k~v~~~~~~w~~~l~ 469 (525)
++||..||+++++| ++++|||++|++++++||+++++.+ .+-.|+.+||.++..
T Consensus 667 ~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~ 735 (745)
T TIGR02478 667 TRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRP 735 (745)
T ss_pred HHHHHHHHHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHH
Confidence 99999999999998 7999999999999999999865432 233488899997754
No 23
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=5.7e-62 Score=560.61 Aligned_cols=405 Identities=21% Similarity=0.247 Sum_probs=303.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-----ccccccccCCccceeccCCCeEEEEEcCC
Q 009804 88 LSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-----RGTHFRRAGPRQKVYFESDEVYACIVTCG 162 (525)
Q Consensus 88 l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-----~~~~f~~aGpr~~~~f~~~~~~iaIvtsG 162 (525)
...|.|.||..++. .++.+......++....+...+.+.++ +..+|.+.... ...-.+..+||||++||
T Consensus 113 r~~~~p~lp~~l~~-----~~~~~~~~~g~~~~~~~d~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~rIgIl~SG 186 (1419)
T PTZ00287 113 RIKYQPTLPKALAS-----EYQILEENHGDDFINKKDYEEVKRFLKNLHNLPILNVKETNNH-ESFKGGNVLKIGIILSG 186 (1419)
T ss_pred HHhcCCCCchhhcc-----ccccceeccCcccccccCHHHHHHHHHHhhcCceeeecCCCcc-ccccccCceEEEEEccC
Confidence 45889999887743 222222222222222222222222222 44555543211 11111344799999999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcc-cccccCCC----CcHHHHHHH
Q 009804 163 GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGT-VLGTSRGG----HDTSKIVDS 237 (525)
Q Consensus 163 G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGt-iLGSsR~~----~d~~~iv~~ 237 (525)
|+|||||+||+++++.+.+...+.+||||++||.||+++++++|+|..+++|+++||+ +|||+|.. +++++++++
T Consensus 187 GpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~~~e~~~ki~e~ 266 (1419)
T PTZ00287 187 GPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLIAIENI 266 (1419)
T ss_pred CCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999875444579999999999999999999999999999999997 89999985 369999999
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--------------------------
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL-------------------------- 289 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD-------------------------- 289 (525)
|++++||+||+||||||+++|++|++++++.+++++||||||||||||+ +||
T Consensus 267 lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~I~ni~~D~~Ss 346 (1419)
T PTZ00287 267 VAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTG 346 (1419)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999 688
Q ss_pred ------------hhhHHHHHHhhhcCCccEEEcCCCC----CCccc-hhhHHHHHHHHHHc-CCcEEEEEecCCCCcchh
Q 009804 290 ------------LTWFIAMYATLASRDVDCCLIPESP----FYLEG-HGGLFEYIETRLKE-NGHMVIVIAEGAGQDLLA 351 (525)
Q Consensus 290 ------------~sG~IAl~aaLAs~~ad~iLIPE~p----f~leg-~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~~ 351 (525)
+|||||++||||+ +||+|||||++ ++++. ...+++.+.+|.+. ++|+|||||||+.+.+..
T Consensus 347 ~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIvVsEGlie~Ipe 425 (1419)
T PTZ00287 347 HNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPEGLIEFVPE 425 (1419)
T ss_pred CCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcchhcch
Confidence 8999999999999 89999999985 45441 11133444445444 699999999999861111
Q ss_pred -------------------HHhh----------h------hccccccCCccchhHH--HHHHHHHHHHhCCC--CceeeE
Q 009804 352 -------------------ESIR----------S------ATQQDASGNKLLQDVG--LWLSQKIKDHFAKE--KKMPIN 392 (525)
Q Consensus 352 -------------------~~~~----------~------~~~~DasGn~~L~dig--~~La~~Ik~~~~~~--~~~~~~ 392 (525)
+.+. . ..++|+|||+++++++ +.|++++++++... .+..+.
T Consensus 426 ~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L~~~~~~g~~~k 505 (1419)
T PTZ00287 426 MKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESELAKLNDNNLNIQ 505 (1419)
T ss_pred HHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHHHHHHhcCCCee
Confidence 0000 0 1258999999999876 47777777665421 133466
Q ss_pred eeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEechhHHhhhcCcC-CcchHHH
Q 009804 393 LKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIPFYRIIEKQHHV-VITDRMW 464 (525)
Q Consensus 393 lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vPL~~v~~~~k~v-~~~~~~w 464 (525)
.++..+||+|||+.|+.+|..||+.||+.||+++.+|+||+|+++.|-. +..+||..+++.+++- .......
T Consensus 506 ~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~~e~~~~g~~~pvi 585 (1419)
T PTZ00287 506 FMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMHVNRDNTGKEFPAV 585 (1419)
T ss_pred EEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhhHHhhccCCCceeE
Confidence 7788899999999999999999999999999999999999999999842 3459999999976643 2222223
Q ss_pred HHHH-hccCCC--CCcCcccccchHHHHHHhhhh-hccC
Q 009804 465 ARLL-SSTNQP--SFMNHKDVIEDKKEEELLTQI-VNED 499 (525)
Q Consensus 465 ~~~l-~~tgqp--~f~~~~~~~~~~~~~~~~~pl-~~g~ 499 (525)
.+.+ ...|+| -|...++.|..++.+++++|+ +.|.
T Consensus 586 ~k~~v~l~g~~f~~~~~~r~~w~~~d~Y~~pGpiQ~~g~ 624 (1419)
T PTZ00287 586 KRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGH 624 (1419)
T ss_pred EeeeeCCCCHHHHHHHHHHHHhhhcccccCCCCeecccc
Confidence 3333 233333 244567889999999999999 7776
No 24
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=6e-60 Score=528.01 Aligned_cols=353 Identities=19% Similarity=0.215 Sum_probs=274.3
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCccc---eeeeccCCccccchhcccCCC-----ccccccc--------cCCccce
Q 009804 84 DVPHLSDYIPDLPTYPNPLQDNPAYSVVK---QYFVHVDDTVPQKVVVHKDSP-----RGTHFRR--------AGPRQKV 147 (525)
Q Consensus 84 ~v~~l~~~~p~~p~~~spl~~~~~~~~~~---~~fv~~~~~V~~~~~~~~~~~-----~~~~f~~--------aGpr~~~ 147 (525)
++.++...+...|..++++......+.+. ...+..+..|+..+..+ +|. |+..|.+ .-+....
T Consensus 305 G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~-~~~~a~~lr~~~f~~~~~~~~~~~~~~~~~ 383 (762)
T cd00764 305 GVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEK-RFDEAAALRGKSFDKNWNLYKLLAIELPQP 383 (762)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhh-hHHHHHHhcchhHHHHHHHHHhccccCCcc
Confidence 44445555555555566665433333333 23466677776665544 332 3333321 0011001
Q ss_pred eccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC
Q 009804 148 YFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG 227 (525)
Q Consensus 148 ~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~ 227 (525)
....+.+||||+||||||||||++||++++.+.. +| .+||||++||+||+++++++|+|++|++|+++|||+|||+|+
T Consensus 384 ~~~~~~~~IaIltsGG~apGmNaairavv~~a~~-~g-~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~ 461 (762)
T cd00764 384 LPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA-HG-HRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRT 461 (762)
T ss_pred CCcccccEEEEEecCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCC
Confidence 1223458999999999999999999999998875 45 699999999999999999999999999999999999999998
Q ss_pred C--CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCc---------------
Q 009804 228 G--HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPL--------------- 289 (525)
Q Consensus 228 ~--~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD--------------- 289 (525)
. +++++++++|++++||+||+||||||+++|++|++++.++ .+.|+||||||||||||++||
T Consensus 462 ~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~~~ 541 (762)
T cd00764 462 LPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKY 541 (762)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHHHH
Confidence 5 4799999999999999999999999999999999987654 367999999999999999999
Q ss_pred -----------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-----CCcEEEEE
Q 009804 290 -----------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-----NGHMVIVI 341 (525)
Q Consensus 290 -----------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-----~g~~VIVV 341 (525)
+|||||++++||+ +||+|||||++|+++.....++++.+++++ +.+.++++
T Consensus 542 id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~~~ 620 (762)
T cd00764 542 CDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKC 620 (762)
T ss_pred HHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeeeee
Confidence 9999999999999 799999999999998422223344444433 35788999
Q ss_pred ecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHH
Q 009804 342 AEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQS 421 (525)
Q Consensus 342 AEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~ 421 (525)
|||+...+ ++..+++++++. +.+|..+|||+||||.|+++||++|++||..
T Consensus 621 se~~~~~~---------------------~~~~~~~~~~~~--------~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~ 671 (762)
T cd00764 621 NENYTTVF---------------------TYELYSEEGKGV--------FDCRTNVLGHVQQGGAPSPFDRNFGTKFAVK 671 (762)
T ss_pred ecCCcccc---------------------HHHHHHHHHhcC--------CceEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 99984221 234566666542 3468899999999999999999999999999
Q ss_pred HHHHHHcCC---------------CceEEEEECCeEEEechhHHhhhc-CcCCcchHHHHHHHh
Q 009804 422 CVHGAMAGY---------------TGYTSGLVNGRQTYIPFYRIIEKQ-HHVVITDRMWARLLS 469 (525)
Q Consensus 422 AV~~a~aG~---------------tg~mVgi~n~~~~~vPL~~v~~~~-k~v~~~~~~w~~~l~ 469 (525)
||+++++.. +.+++|+++.++++.|+.++.+.. .+..|+..||.++..
T Consensus 672 Av~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~ 735 (762)
T cd00764 672 AMKWIEQKLKENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRP 735 (762)
T ss_pred HHHHHHHhhhhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHH
Confidence 999999852 789999999999999999988743 233478899987643
No 25
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=1.3e-59 Score=476.28 Aligned_cols=238 Identities=34% Similarity=0.535 Sum_probs=209.6
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-----
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG----- 228 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~----- 228 (525)
+||||+||||+|||||++|+++++.+.+ ++ .+||||++||+||+++++++|++++++.|+++|||+|||+|++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~-~g-~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR-RG-WEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH-TT-SEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh-cC-CEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 5899999999999999999999999874 56 5999999999999999999999999999999999999999985
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------- 289 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------- 289 (525)
++.++++++|++++||+||+||||||+++|++|++++. ++|||||||||||+++||
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 24678999999999999999999999999999998763 789999999999999999
Q ss_pred ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804 290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL 350 (525)
Q Consensus 290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~ 350 (525)
+|||||++++||+ ++|+|||||.||+++ .|++.|++++++ ++|+|||||||+...
T Consensus 154 ~~~a~s~~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~-- 227 (282)
T PF00365_consen 154 KTTARSHNRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDG-- 227 (282)
T ss_dssp HHHHHHSTEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSS--
T ss_pred HHhhcccCCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEeccccccc--
Confidence 9999999999999 799999999999987 899999999877 579999999999641
Q ss_pred hHHhhhhccccccCCccchhHH-HHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHc
Q 009804 351 AESIRSATQQDASGNKLLQDVG-LWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMA 428 (525)
Q Consensus 351 ~~~~~~~~~~DasGn~~L~dig-~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~a 428 (525)
.++. +.+.+..++..+ +.+|+.+|||+|||+.|+++||.+|++||.+||+++++
T Consensus 228 ------------------~~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 228 ------------------QPISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp ------------------HBHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------ccccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 1111 334444444333 45689999999999999999999999999999999875
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.6e-53 Score=489.21 Aligned_cols=342 Identities=15% Similarity=0.137 Sum_probs=274.1
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccc-cccCCC-
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVL-GTSRGG- 228 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiL-GSsR~~- 228 (525)
+.++|||||||||+|||||+|||++++.+...++. ++| ++||.||+++++++|+.++|++|+++|||+| ||+|..
T Consensus 834 ~~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g~--~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~ 910 (1419)
T PTZ00287 834 SFEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKGV--CIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHS 910 (1419)
T ss_pred cCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCCe--EEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCC
Confidence 35689999999999999999999999999765553 455 5599999999999999999999999999999 999963
Q ss_pred ----CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc-------------
Q 009804 229 ----HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL------------- 289 (525)
Q Consensus 229 ----~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD------------- 289 (525)
+.+++++++|++++||+||+||||||+++|+.|+|+++++|++++||||||||||||.+ ||
T Consensus 911 f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~s 990 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYA 990 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999987 88
Q ss_pred -------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccc-----hhhHHHHHHHHHHc-CCcEE
Q 009804 290 -------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEG-----HGGLFEYIETRLKE-NGHMV 338 (525)
Q Consensus 290 -------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg-----~~~lle~I~~rl~~-~g~~V 338 (525)
+|||||++||||+ +||+|||||++++-+. .+.+++.|++|.++ ++|+|
T Consensus 991 eaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygI 1069 (1419)
T PTZ00287 991 SLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGT 1069 (1419)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEE
Confidence 8999999999999 8999999999988111 22677788888776 68999
Q ss_pred EEEecCCCCc-------------chhH----------------------------------------------Hh-----
Q 009804 339 IVIAEGAGQD-------------LLAE----------------------------------------------SI----- 354 (525)
Q Consensus 339 IVVAEGa~~~-------------~~~~----------------------------------------------~~----- 354 (525)
|||+||.... ++++ .+
T Consensus 1070 VlV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~ 1149 (1419)
T PTZ00287 1070 VLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSL 1149 (1419)
T ss_pred EEEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHH
Confidence 9999997531 1110 00
Q ss_pred ----------h-hhccccccCCccchhH--HHHHHHHHHHHhCCC-------CceeeEeeEeCCCccccCCCCCcchHHH
Q 009804 355 ----------R-SATQQDASGNKLLQDV--GLWLSQKIKDHFAKE-------KKMPINLKYIDPTYMIRAVPSNASDNVY 414 (525)
Q Consensus 355 ----------~-~~~~~DasGn~~L~di--g~~La~~Ik~~~~~~-------~~~~~~lkyi~pgY~qRg~~psa~Dr~~ 414 (525)
. +-.++|. ||+++..| .+.|++++++++..+ .++....|| +||..||+.||-||+.|
T Consensus 1150 ~lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~Hf--fGYegR~~~PS~FD~~y 1226 (1419)
T PTZ00287 1150 ALLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHF--FGYQGRSSLPSEFDCKL 1226 (1419)
T ss_pred HHHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeec--cccccccCCCCccchHH
Confidence 0 0125788 99998765 467777777765421 123333454 89999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEECC-------eEEEechhHHhhhcCcCC----------cchHHHHHHH-hccCCC--
Q 009804 415 CTLLAQSCVHGAMAGYTGYTSGLVNG-------RQTYIPFYRIIEKQHHVV----------ITDRMWARLL-SSTNQP-- 474 (525)
Q Consensus 415 a~~LG~~AV~~a~aG~tg~mVgi~n~-------~~~~vPL~~v~~~~k~v~----------~~~~~w~~~l-~~tgqp-- 474 (525)
|+.||+.|..++..|.||+|.++.|- +..-+||..+++.+++-. .+.....+.+ ...|+|
T Consensus 1227 ~Y~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ve~r~~~~k~~~~~~g~~~pvI~k~~Vdl~g~~fk 1306 (1419)
T PTZ00287 1227 AYSYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILPRGQGSKYLKSASKGDLPVIPSAPVDLNGKAYR 1306 (1419)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhchhhhccccccccccccCccccccccccCCCCHHHH
Confidence 99999999999999999999999884 235699999998665431 1112222222 223333
Q ss_pred CCcCcccccchHHHHHHhhhh-hccC
Q 009804 475 SFMNHKDVIEDKKEEELLTQI-VNED 499 (525)
Q Consensus 475 ~f~~~~~~~~~~~~~~~~~pl-~~g~ 499 (525)
.|....+.|.-++.+.+++|+ +.|.
T Consensus 1307 ~~~~~r~~W~~~d~y~~PGPiQ~~g~ 1332 (1419)
T PTZ00287 1307 SLKIALQKWQMEDRFCNPGPIQFEGN 1332 (1419)
T ss_pred HHHHHHHhhhhcCcCCCCCCccccCc
Confidence 245567889999999999998 7776
No 27
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-48 Score=423.08 Aligned_cols=416 Identities=38% Similarity=0.474 Sum_probs=378.1
Q ss_pred CCCCCCceecCCC------cccccCCCcccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhc--ccCCCcccc
Q 009804 66 NGNSQRKIVTGPA------GYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVV--HKDSPRGTH 137 (525)
Q Consensus 66 ~~~~~~~~~~~~~------~~~~~~v~~l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~--~~~~~~~~~ 137 (525)
.......|.+|.. +++.|..++..++.|.+|..+.++.++..++....+|...++.|...+.. ....+...+
T Consensus 25 ~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ 104 (666)
T KOG2440|consen 25 RGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLT 104 (666)
T ss_pred cCceEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchh
Confidence 4445557788876 78999999999999999999999999999999999999999999998876 455668899
Q ss_pred ccccCCccceeccCCCeEEEEEcCCCChhhHHHHHHHHHHHHH-HhcCCeEEEEEccc----------------hhhhcc
Q 009804 138 FRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLY-YMYGVKRVLGIDGG----------------YRGFYA 200 (525)
Q Consensus 138 f~~aGpr~~~~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~-~~~g~~~V~Gi~~G----------------~~GL~~ 200 (525)
+.+++|+++.||.++.+++|||||||+|||.|.+|+++|-.+. .+||..+++|+.-+ ++||+.
T Consensus 105 ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~ 184 (666)
T KOG2440|consen 105 GARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVA 184 (666)
T ss_pred HhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEe
Confidence 9999999999999999999999999999999999999999886 77898899998777 999999
Q ss_pred CCe--EeCChhhhhcccccCcccccccCCCCc---HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEE
Q 009804 201 KNT--IALTPKGVNDIHKRGGTVLGTSRGGHD---TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 201 ~~~--i~Lt~~~v~~i~~~GGtiLGSsR~~~d---~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VI 275 (525)
+.. .-+....|.+|+..++++|+++|..++ +.++++..+++++|.||||||+++.++|..++|+++++.++..++
T Consensus 185 evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~ 264 (666)
T KOG2440|consen 185 EVMGRHCGYLALVAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVV 264 (666)
T ss_pred eehhhccchHHHHHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeee
Confidence 888 677788999999999999999999877 889999999999999999999999999999999999999999999
Q ss_pred EeeccccCCCCCCc----------------------------------------hhhHHHHHHhhhcCCccEEEcCCC--
Q 009804 276 GIPKTIDNDIPVPL----------------------------------------LTWFIAMYATLASRDVDCCLIPES-- 313 (525)
Q Consensus 276 gIPKTIDNDI~gtD----------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~-- 313 (525)
++||||||||.-.| +|++||++++||+++.|+|++||.
T Consensus 265 g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~ 344 (666)
T KOG2440|consen 265 GVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRG 344 (666)
T ss_pred cceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcc
Confidence 99999999999766 999999999999999999999999
Q ss_pred -----------------------CCCcc--chhhHHHHHHHHHHcCCcEEEEEecCCCCcchhHHhhhh-ccccccCCcc
Q 009804 314 -----------------------PFYLE--GHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSA-TQQDASGNKL 367 (525)
Q Consensus 314 -----------------------pf~le--g~~~lle~I~~rl~~~g~~VIVVAEGa~~~~~~~~~~~~-~~~DasGn~~ 367 (525)
||+.+ +....+.....+++...|++|+++|+++++++..+.... ...|++++..
T Consensus 345 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~ 424 (666)
T KOG2440|consen 345 RKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELI 424 (666)
T ss_pred hhhhhhhhHHhhhhccccccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhH
Confidence 88887 555667888899999999999999999998776543322 2359999999
Q ss_pred chhHHHHHHHHHHHHhCCCC-ceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEEec
Q 009804 368 LQDVGLWLSQKIKDHFAKEK-KMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIP 446 (525)
Q Consensus 368 L~dig~~La~~Ik~~~~~~~-~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~~~~vP 446 (525)
+.|++.|+.+-.++++.++. ....+++||+|.|++|..+.++.|-.||+.+++.++|.++++++++.+++++....+.|
T Consensus 425 ~~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~sn 504 (666)
T KOG2440|consen 425 WKDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSN 504 (666)
T ss_pred HHHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecC
Confidence 99999999999999876432 14568999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCcCCcchHHHHHHHhccCCCCCcCccc
Q 009804 447 FYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKD 481 (525)
Q Consensus 447 L~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~ 481 (525)
....++....+++.+.+|+++++.|.||.|+....
T Consensus 505 nvpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~ 539 (666)
T KOG2440|consen 505 NVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRR 539 (666)
T ss_pred CccccccccccchhHhhhhhhhhhccCCcccccce
Confidence 99999999999999999999999999999998654
No 28
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=422.24 Aligned_cols=340 Identities=15% Similarity=0.126 Sum_probs=263.8
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCe--EeCC----hhhhhcccccCccccccc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNT--IALT----PKGVNDIHKRGGTVLGTS 225 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~--i~Lt----~~~v~~i~~~GGtiLGSs 225 (525)
..+++|||+.||++||+|+||.+++.++.. .| |+||++||.||++++. +.|| .+.++.|+++||++|+++
T Consensus 674 ~~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~ 749 (1328)
T PTZ00468 674 ACESLGLILSCLSTPGTQNVICGLVNGLPS-LK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNG 749 (1328)
T ss_pred cceeEEEEecCCCCccHHHHHHHHHHHHHh-CC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeecc
Confidence 348999999999999999999999999974 33 9999999999999875 4565 578999999999999999
Q ss_pred ----------CCC---------C---------------cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC--
Q 009804 226 ----------RGG---------H---------------DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG-- 269 (525)
Q Consensus 226 ----------R~~---------~---------------d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g-- 269 (525)
|+. + +.+.+.+.|++++||+||+||||||+++|..|+|++.+++
T Consensus 750 ~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~ 829 (1328)
T PTZ00468 750 VEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLN 829 (1328)
T ss_pred ccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccc
Confidence 632 1 3478999999999999999999999999999999988765
Q ss_pred ---CceeEEEeeccccCCCCC--Cc--------------------------------------hhhHHHHHHhhhcCCcc
Q 009804 270 ---LKVVVAGIPKTIDNDIPV--PL--------------------------------------LTWFIAMYATLASRDVD 306 (525)
Q Consensus 270 ---~~i~VIgIPKTIDNDI~g--tD--------------------------------------~sG~IAl~aaLAs~~ad 306 (525)
..++||||||||||||++ || +|||||+++|||+ +||
T Consensus 830 ~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gan 908 (1328)
T PTZ00468 830 GMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPN 908 (1328)
T ss_pred cccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCC
Confidence 459999999999999998 87 9999999999999 899
Q ss_pred EEEcCCCC--------------CCccc-hhhHHHHHHHHHHc-CCcEEEEEecCCCCcc---------hhHH--------
Q 009804 307 CCLIPESP--------------FYLEG-HGGLFEYIETRLKE-NGHMVIVIAEGAGQDL---------LAES-------- 353 (525)
Q Consensus 307 ~iLIPE~p--------------f~leg-~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~---------~~~~-------- 353 (525)
+|||||.+ ++++. .+.+++.|.+|.++ ++|+|||||||+.+.+ +.+.
T Consensus 909 ivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~ 988 (1328)
T PTZ00468 909 LVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNA 988 (1328)
T ss_pred EEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhccccc
Confidence 99999997 45331 22566667777765 5899999999986533 1110
Q ss_pred --------------------h-----------hhhccccccCCccchhH--HHHHHHHHHHHhCCC-------CceeeEe
Q 009804 354 --------------------I-----------RSATQQDASGNKLLQDV--GLWLSQKIKDHFAKE-------KKMPINL 393 (525)
Q Consensus 354 --------------------~-----------~~~~~~DasGn~~L~di--g~~La~~Ik~~~~~~-------~~~~~~l 393 (525)
+ ..+.-.|..||+++..| .+.|++++++++..+ .++....
T Consensus 989 ~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~ 1068 (1328)
T PTZ00468 989 SNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVC 1068 (1328)
T ss_pred cchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceee
Confidence 0 00111333399999876 367777777665421 1233334
Q ss_pred eEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC-CceEEEEECCe-------EEEechhHHhhhcCcCC----cch
Q 009804 394 KYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY-TGYTSGLVNGR-------QTYIPFYRIIEKQHHVV----ITD 461 (525)
Q Consensus 394 kyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~-tg~mVgi~n~~-------~~~vPL~~v~~~~k~v~----~~~ 461 (525)
|| +||..||+.||-||+.||+.||+.|..++..|. ||+|.++.|-. ...+||..+++.+++-. ..
T Consensus 1069 Hf--fGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~~~~~~~~~~~~- 1145 (1328)
T PTZ00468 1069 FS--FTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLNIEGDKIMDSR- 1145 (1328)
T ss_pred cc--ccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCcccccCcccccc-
Confidence 44 899999999999999999999999999999999 69999999842 34599999988654321 11
Q ss_pred HHHH---------------------------HHHh-ccCCC--CCcCcccccchHHHHHHhhhh-hccC
Q 009804 462 RMWA---------------------------RLLS-STNQP--SFMNHKDVIEDKKEEELLTQI-VNED 499 (525)
Q Consensus 462 ~~w~---------------------------~~l~-~tgqp--~f~~~~~~~~~~~~~~~~~pl-~~g~ 499 (525)
..|. .+.. ..|.| .|....+.|.-++.+.+.+|+ +.|.
T Consensus 1146 ~~~~~~~~~k~vi~~~~~~~~~~~~~~~~~~~~Vd~l~g~~f~~~~~~r~~w~~~d~y~~PGPiQ~~gp 1214 (1328)
T PTZ00468 1146 NNSNLSFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQYFNL 1214 (1328)
T ss_pred cccccccccccceeccccccccccccccccccccccccCHHHHHHHHHHHhhhhccccCCCCCccccCc
Confidence 1121 1122 23343 245567889999999999998 7776
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.8e-31 Score=290.52 Aligned_cols=264 Identities=23% Similarity=0.320 Sum_probs=215.9
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCC--eEeCChhhhhcccccCcccccccCCC-----Cc
Q 009804 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN--TIALTPKGVNDIHKRGGTVLGTSRGG-----HD 230 (525)
Q Consensus 158 IvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~--~i~Lt~~~v~~i~~~GGtiLGSsR~~-----~d 230 (525)
|+||||++||||+++|++++... +...++|+|+.||.|++++. +.+++|..|+.|...||+++||.|+. +.
T Consensus 1 v~tsggd~~gmnaavr~~vr~~i--~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~g 78 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMGI--YRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREG 78 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhcc--ccCceEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccc
Confidence 68999999999999999999886 45589999999999999965 78999999999999999999999975 35
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHH-------HH----------cCCceeEEEeeccccCCCCCCc----
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEV-------RR----------RGLKVVVAGIPKTIDNDIPVPL---- 289 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~-------~~----------~g~~i~VIgIPKTIDNDI~gtD---- 289 (525)
+.+...++-+.+|+.|+++||||++++|..+-++. .+ .+....++||+.|||||+.++|
T Consensus 79 r~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG 158 (666)
T KOG2440|consen 79 RLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIG 158 (666)
T ss_pred eeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeec
Confidence 77888999999999999999999999999865542 11 2567889999999999999988
Q ss_pred -------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEE
Q 009804 290 -------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMV 338 (525)
Q Consensus 290 -------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~V 338 (525)
||||+|+.+++|+ ++|.|++||.|-.- ++.+++.+. ..++.|.-+
T Consensus 159 ~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~-~aD~i~~pe~~~~~--~~q~~~~l~-~~r~~Gln~ 234 (666)
T KOG2440|consen 159 IDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAG-GADTIFIPERPGED--PEQLCEILD-SIRKRGLNI 234 (666)
T ss_pred cccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhc-CCCEEEecCCCCCC--HHHHHHHHH-HHHhCCCCE
Confidence 9999999999999 79999999998764 334555444 344556889
Q ss_pred EEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHH
Q 009804 339 IVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLL 418 (525)
Q Consensus 339 IVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~L 418 (525)
|+|+||+... .|++ .+++.++++.- .+..+.++-.++||+||++.|++|||++|+++
T Consensus 235 viVigG~~~~--------------~ga~-------i~ae~vk~~~~--k~lv~g~p~TilGdvqrgg~p~afDr~ta~~~ 291 (666)
T KOG2440|consen 235 VIVIGGAIDN--------------TGAP-------IIAEEVKERKL--KVLVVGVPKTILGDVQRGGVPSAFDRITACEM 291 (666)
T ss_pred EEEEecccCC--------------CCCc-------ccHHHHHHhhh--heeeecceeeecCccccCCcccccchHHHHHH
Confidence 9999999642 2332 34555555422 12234556778999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEECCeEEEechhHHhhh
Q 009804 419 AQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEK 453 (525)
Q Consensus 419 G~~AV~~a~aG~tg~mVgi~n~~~~~vPL~~v~~~ 453 (525)
|+.||.+++..... ++.+.+++-.|+.+....
T Consensus 292 g~eAI~a~l~~a~s---~~~g~~~VRlmgr~~~~i 323 (666)
T KOG2440|consen 292 GQEAINAALEEAES---AENGNGIVRLMGRESVHI 323 (666)
T ss_pred HHHHHHHHHhhchh---hcccceeEEehhHHHHHH
Confidence 99999999988766 556667788888775543
No 30
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=93.50 E-value=0.3 Score=51.80 Aligned_cols=126 Identities=24% Similarity=0.307 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--hhhHHHHHHhhhcCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL--LTWFIAMYATLASRD 304 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD--~sG~IAl~aaLAs~~ 304 (525)
+|+..+++.+.++|+|-+++.|||||.+....-. +-+++|.|||.=.-|=... +. +++-++. .+.. +
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~--~~lk-g 157 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNYSGVFALSPEDAARLLG--AFLK-G 157 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeeccccceeccccccChHHHHHHHH--HHhc-c
Confidence 6899999999999999999999999998765432 4578999999877665432 11 3333331 1111 1
Q ss_pred ccEEEcCCCCCCccchhhHHHHHHHH--HHc--CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHH
Q 009804 305 VDCCLIPESPFYLEGHGGLFEYIETR--LKE--NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIK 380 (525)
Q Consensus 305 ad~iLIPE~pf~leg~~~lle~I~~r--l~~--~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik 380 (525)
+.=+--+...+++ +...+| +.. .|.+++.+.|..-|.- ....|..+ +.+++.++++.+.
T Consensus 158 -~~r~~~r~V~did------Ee~yrr~~~~~~~~g~~~~p~~~~~~~~~-------k~~~~~~~---~~~~A~~iad~~~ 220 (355)
T COG3199 158 -NARLENREVVDID------EEAYRRGLVVARRFGELIVPIVEDLVQGS-------KVQVDEEG---LEDGARAIADEMD 220 (355)
T ss_pred -ccccccccccccc------hhhhhcceeeeeeeeeEEeeeccccccCc-------ceecChhH---HHHHHHHHHhhhh
Confidence 2223333344444 222222 222 3667777788554420 11123333 4556777777665
No 31
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.98 E-value=3.6 Score=40.20 Aligned_cols=119 Identities=12% Similarity=0.064 Sum_probs=74.2
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
.|||+...=..|-.+.+++++...+.. +|. +++- ..+........++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AGY-SLLI-------------------------------ANSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cCC-EEEE-------------------------------EeCCCChHHHHHH
Confidence 367888766678888899999888864 552 3321 1111112335678
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC--c--hhhHHHHHHhhhcCCccEEEc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP--L--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt--D--~sG~IAl~aaLAs~~ad~iLI 310 (525)
++.+..+++|++++.+++.... .+.++++++++ +||.+=...+++++.+ | .+|..|+.--+..|.-+++++
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~i--pvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~~i~~l 122 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLDL--PIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGHRRIALV 122 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCCC--CEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCCcEEEEe
Confidence 8889999999999998764322 23445555664 4555544444444433 3 778877665555656677776
Q ss_pred C
Q 009804 311 P 311 (525)
Q Consensus 311 P 311 (525)
-
T Consensus 123 ~ 123 (269)
T cd06281 123 G 123 (269)
T ss_pred c
Confidence 3
No 32
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.70 E-value=0.29 Score=49.78 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHHHHHcCC------CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 233 KIVDSIQDRGI------NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 233 ~iv~~l~~~~I------d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
.+-+-.+++++ |.+++||||||+-.|...+. ...++|+||-.
T Consensus 10 ~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~ 57 (246)
T PRK04761 10 ALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR 57 (246)
T ss_pred HHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC
Confidence 33444566777 99999999999987765532 34578999854
No 33
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.52 E-value=0.3 Score=50.02 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCC-----CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 232 SKIVDSIQDRGI-----NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 232 ~~iv~~l~~~~I-----d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+++.+.++.+++ |.+++||||||+-.|...+. ..+++|+||-
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN 64 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGIN 64 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEe
Confidence 445556666666 99999999999987765543 3457899985
No 34
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.84 E-value=0.58 Score=48.03 Aligned_cols=45 Identities=36% Similarity=0.427 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcC-------CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 231 TSKIVDSIQDRG-------INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 231 ~~~iv~~l~~~~-------Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
.+++.+.|++++ .|.++++|||||+-.|...+.. .-.+++++||.
T Consensus 17 ~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN 68 (265)
T PRK04885 17 ASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVH 68 (265)
T ss_pred HHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEe
Confidence 345555565554 5899999999999877655431 11467899986
No 35
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=89.70 E-value=0.25 Score=50.72 Aligned_cols=41 Identities=22% Similarity=0.570 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
..+.+...+.|.++++|||||+..|..... ..+++|+||+.
T Consensus 68 ~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~ 108 (285)
T PF01513_consen 68 ALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT 108 (285)
T ss_dssp CCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES
T ss_pred hhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC
Confidence 344556789999999999999998876643 35689999984
No 36
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.85 E-value=0.87 Score=47.24 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.|.+++||||||+-.|...+. ..+++|+||-
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN 95 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIH 95 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEe
Confidence 6899999999999766555432 3457899984
No 37
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.58 E-value=1.2 Score=45.76 Aligned_cols=42 Identities=29% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHHcC---------CCEEEEEcCCcchHHHHHHHHHHHHcCC-ceeEEEee
Q 009804 232 SKIVDSIQDRG---------INQVYIIGGDGTQKGASVIYEEVRRRGL-KVVVAGIP 278 (525)
Q Consensus 232 ~~iv~~l~~~~---------Id~L~vIGGdgS~~~A~~L~e~~~~~g~-~i~VIgIP 278 (525)
+++.+.|+++| .|.++++|||||+-.|...+. .. +++|+||.
T Consensus 20 ~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn 71 (264)
T PRK03501 20 KPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIS 71 (264)
T ss_pred HHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEe
Confidence 44455555554 579999999999977665432 22 46788874
No 38
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=85.98 E-value=30 Score=32.69 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=74.2
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+||+++.+-..|-.+.+++++-..+.. +|. ++. .+ .+....+...+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~-~l~---------------~~----------------~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AGY-QVL---------------LA----------------NSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cCC-eEE---------------EE----------------eCCCCHHHHHHH
Confidence 578898876788888899888777754 332 111 00 111111235677
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC--CCC--CCc--hhhHHHHHHhhhcCCccEE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN--DIP--VPL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--DI~--gtD--~sG~IAl~aaLAs~~ad~i 308 (525)
++.+...+++++++.+.+.+... ..+.+.+.+ +++|.+-.+.++ .+. .+| .+|..++......+.-.+.
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~ 122 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAEKGHRRIA 122 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCCCcccceEecCcHHHHHHHHHHHHHhcCCcEE
Confidence 77788889999999988776544 234444456 557777666653 222 234 6777776655555455666
Q ss_pred EcCCC
Q 009804 309 LIPES 313 (525)
Q Consensus 309 LIPE~ 313 (525)
+|-..
T Consensus 123 ~i~~~ 127 (264)
T cd01537 123 LLAGP 127 (264)
T ss_pred EEECC
Confidence 66443
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.93 E-value=1.2 Score=45.43 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.|.+++||||||+-.|.... +++|+||-
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin 69 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFK 69 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEe
Confidence 569999999999998765442 47789886
No 40
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=85.55 E-value=22 Score=36.17 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=73.8
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||++...-.-|-.+.++.++...+.. +|. .++- .-+.+..+...
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 110 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA-QGR-MVFL-------------------------------LQGGKDGEQLA 110 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH-cCC-EEEE-------------------------------EeCCCCHHHHH
Confidence 35789998776778888899998887764 442 2210 00112223456
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCCCCc--hhhHHHHHHhhhcCCccEEE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIPVPL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~gtD--~sG~IAl~aaLAs~~ad~iL 309 (525)
+.++.|...++|++++.+.+.... .+.+.+++.++++-.++-+-..+. |...+| .+|+.|+.--+..|+-.+++
T Consensus 111 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~ 187 (342)
T PRK10014 111 QRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQRIAW 187 (342)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 778889999999999998765322 233445556755433333211111 222345 77888876656665667777
Q ss_pred cC
Q 009804 310 IP 311 (525)
Q Consensus 310 IP 311 (525)
|-
T Consensus 188 i~ 189 (342)
T PRK10014 188 LG 189 (342)
T ss_pred Ec
Confidence 73
No 41
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=85.15 E-value=21 Score=34.64 Aligned_cols=78 Identities=8% Similarity=0.129 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC---CCC--CCc--hhhHHHHHHhhhc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN---DIP--VPL--LTWFIAMYATLAS 302 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN---DI~--gtD--~sG~IAl~aaLAs 302 (525)
...+.++.+.+.++|++++.+.+... ...+.+++.++++ ++|.+=..++. .+. ++| .+|+.|+.--+..
T Consensus 44 ~~~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~l~~~~i--Pvv~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~ 119 (272)
T cd06301 44 TQLSQVENFIAQGVDAIIVVPVDTAA--TAPIVKAANAAGI--PLVYVNRRPENAPKGVAYVGSDEVVAGRLQAEYVADK 119 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhh--hHHHHHHHHHCCC--eEEEecCCCCCCCCeeEEEecChHHHHHHHHHHHHHH
Confidence 35577888889999999998876432 1234455555664 56655333332 222 233 7788886555443
Q ss_pred --CCccEEEcC
Q 009804 303 --RDVDCCLIP 311 (525)
Q Consensus 303 --~~ad~iLIP 311 (525)
+...+++|.
T Consensus 120 ~~~~~~i~~i~ 130 (272)
T cd06301 120 LGGKGNVAILM 130 (272)
T ss_pred hCCCccEEEEE
Confidence 346777774
No 42
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=84.16 E-value=40 Score=32.37 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=69.7
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
|||+...-..|-.+..+.++-..+.. +|. ++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NGY-QML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CCC-EEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67887766788888888888777754 442 221 111222223345677
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--hhhHHHHHHhhhcCCccEEEc
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+.|...++|++++.+.+.+. .+.+.+++.++++-+++.+.. +++. +| .+|..++..-+..+.-.+.++
T Consensus 49 ~~l~~~~~dgii~~~~~~~~----~~~~~~~~~~ipvv~~~~~~~---~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~v 120 (259)
T cd01542 49 ELLARQKVDGIILLATTITD----EHREAIKKLNVPVVVVGQDYP---GISSVVYDDYGAGYELGEYLAQQGHKNIAYL 120 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCH----HHHHHHhcCCCCEEEEeccCC---CCCEEEECcHHHHHHHHHHHHHcCCCcEEEE
Confidence 88889999999999876542 233444555766555544322 3332 33 778877766666655666666
No 43
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=84.05 E-value=25 Score=35.64 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=82.0
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+||||..-=.-|=.-.+++++-+.+.+ +|. .+ +|.++....+.++.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~-~Gy-~l--------------------------------~l~~t~~~~~~e~~ 48 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEARE-HGY-QL--------------------------------LLCNTGDDEEKEEY 48 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHH-TTC-EE--------------------------------EEEEETTTHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHH-cCC-EE--------------------------------EEecCCCchHHHHH
Confidence 678887766667777788888888764 552 22 23344444555599
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CCC--Cc--hhhHHHHHHhhhcCCcc-E
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IPV--PL--LTWFIAMYATLASRDVD-C 307 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~g--tD--~sG~IAl~aaLAs~~ad-~ 307 (525)
++.|.++++|++++.+-.........+.+ .+ ++||.+=.+.+++ ++. +| .+|+.|+..=+..|+-+ +
T Consensus 49 i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~~--iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I 122 (279)
T PF00532_consen 49 IELLLQRRVDGIILASSENDDEELRRLIK----SG--IPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPI 122 (279)
T ss_dssp HHHHHHTTSSEEEEESSSCTCHHHHHHHH----TT--SEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTE
T ss_pred HHHHHhcCCCEEEEecccCChHHHHHHHH----cC--CCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccCCeE
Confidence 99999999999999976666344333322 24 6788888887776 443 34 88999988877777777 7
Q ss_pred EEcCCCC
Q 009804 308 CLIPESP 314 (525)
Q Consensus 308 iLIPE~p 314 (525)
.++....
T Consensus 123 ~~i~~~~ 129 (279)
T PF00532_consen 123 AFIGGPE 129 (279)
T ss_dssp EEEEEST
T ss_pred EEEecCc
Confidence 7776543
No 44
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=83.53 E-value=26 Score=34.84 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=67.7
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+|||+...-.-|-...++.++...+.. +|. ++. +..+........++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~ 47 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE-LGA-EVI-------------------------------VQNANGDPAKQISQ 47 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH-cCC-EEE-------------------------------EECCCCCHHHHHHH
Confidence 367777655677778888888777754 452 222 11111112335677
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC-C---CCCc--hhhHHHHHHhhhc------
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND-I---PVPL--LTWFIAMYATLAS------ 302 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND-I---~gtD--~sG~IAl~aaLAs------ 302 (525)
++.+...++|++++.+.+.+. ...+.+++++.++ +||.+=...+++ . -.+| .+|+.++..-+..
T Consensus 48 i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~i--pvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~ 123 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEA--LASAVEKAADAGI--PVIAYDRLILNSNVDYYVSFDNEKVGELQGQALVDGLGAKGK 123 (288)
T ss_pred HHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCCC--CEEEECCCCCCCCcceEEEeChHHHHHHHHHHHHHHHhhcCC
Confidence 888889999999998876543 1223355555564 566542222221 1 1233 5788876443333
Q ss_pred CCccEEEc
Q 009804 303 RDVDCCLI 310 (525)
Q Consensus 303 ~~ad~iLI 310 (525)
+...+.++
T Consensus 124 g~~~i~~l 131 (288)
T cd01538 124 PPGNIELI 131 (288)
T ss_pred CCceEEEE
Confidence 45566666
No 45
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=83.10 E-value=39 Score=32.57 Aligned_cols=116 Identities=10% Similarity=-0.020 Sum_probs=72.2
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~~i 234 (525)
|||+..+-.-|-.+.++.++.+.+.+ .|. .+. ++.+.... ....+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~-~~~-~~~-------------------------------~~~~~~~~~~~~~~~ 48 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAARE-AGY-AVT-------------------------------LSMLAEADEEALRAA 48 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHH-CCC-eEE-------------------------------EEeCCCCchHHHHHH
Confidence 67777776777777888888777754 342 221 11111211 345678
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--hhhHHHHHHhhhcCCccEEEc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
++.+.+.++|++++.+-+.... + +.+ +.+.|++ ||.+=...+..++. +| .+|..|+.--+..+..+++++
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~ip--vv~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i 122 (264)
T cd01574 49 VRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPADVP--VVFVDGSPSPRVSTVSVDQEGGARLATEHLLELGHRTIAHV 122 (264)
T ss_pred HHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcCCC--EEEEeccCCCCCCEEEeCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 8889999999999998765554 2 222 3345655 55443334444443 33 889988877766666777777
No 46
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.44 E-value=29 Score=33.66 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=67.2
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccc--cCCCCcHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGT--SRGGHDTS 232 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGS--sR~~~d~~ 232 (525)
||||+..-=.-|-...++.++...+.. +|. ++. +..+ .+......
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~ 47 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKE-LGV-KVT-------------------------------FQGPASETDVAGQV 47 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE-------------------------------EecCccCCCHHHHH
Confidence 577776433456677778888777654 442 221 1111 12223456
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe--eccccCCCC--CCc--hhhHHHHHHhhhc--CC
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI--PKTIDNDIP--VPL--LTWFIAMYATLAS--RD 304 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI--PKTIDNDI~--gtD--~sG~IAl~aaLAs--~~ 304 (525)
++++.+..+++|++|+.+.+... .....+.+.+.+++ +|.+ +-+-++++. .+| .+|+.++..-+.. +.
T Consensus 48 ~~i~~l~~~~vdgvii~~~~~~~--~~~~l~~~~~~~ip--vV~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~ 123 (273)
T cd06310 48 NLLENAIARGPDAILLAPTDAKA--LVPPLKEAKDAGIP--VVLIDSGLNSDIAVSFVATDNVAAGKLAAEALAELLGKK 123 (273)
T ss_pred HHHHHHHHhCCCEEEEcCCChhh--hHHHHHHHHHCCCC--EEEecCCCCCCcceEEEeeChHHHHHHHHHHHHHHcCCC
Confidence 77888899999999998876421 12222444455654 5544 211112222 344 6788887666554 56
Q ss_pred ccEEEc
Q 009804 305 VDCCLI 310 (525)
Q Consensus 305 ad~iLI 310 (525)
-.+.+|
T Consensus 124 ~~i~~i 129 (273)
T cd06310 124 GKVAVI 129 (273)
T ss_pred ceEEEE
Confidence 677777
No 47
>PLN02929 NADH kinase
Probab=82.37 E-value=2.1 Score=44.92 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+.|.+|++|||||+-.|.... ..+++|+||-.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~ 95 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNS 95 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc------CCCCcEEEEEC
Confidence 468899999999998766543 23478999843
No 48
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.11 E-value=1.4 Score=45.55 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.|.+++||||||+-.|...+. ..+++|+||-
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn 73 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGIN 73 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe
Confidence 6899999999999987765542 3457899984
No 49
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.01 E-value=1.4 Score=45.99 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
++|.++++|||||+-.|..... ..+++|+||-
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN 99 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGIN 99 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEe
Confidence 6899999999999988776543 2357899985
No 50
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.75 E-value=1.4 Score=45.78 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+.|.++++|||||+-.|...+. ..+++|+||-.
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~ 96 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT 96 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec
Confidence 5899999999999877665542 34578999853
No 51
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=81.20 E-value=43 Score=33.62 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=70.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTSK 233 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~~ 233 (525)
+||++...=.-|-...+++++-..+.+ +|. ++. +++.+.. .+...+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g~-~v~-------------------------------~~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LGV-DAI-------------------------------YVGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hCC-eEE-------------------------------EECCCCCCHHHHHH
Confidence 467777544578888899999888865 552 322 1122221 233556
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc---CCCCCCc--hhhHHHHHHhhhc-CC-cc
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID---NDIPVPL--LTWFIAMYATLAS-RD-VD 306 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID---NDI~gtD--~sG~IAl~aaLAs-~~-ad 306 (525)
.++.+...++|++++.+.+-+ ....+.+++++.++++-.+..+-+-+ .+....| .+|++|+..-+.. ++ ..
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~iPvV~v~~~~~~~~~~~~~v~~D~~~~g~~a~~~l~~~~~~~~~ 125 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAGIKVVTHDSDVQPDNRDYDIEQADNKAIGETLMDSLAEQMGGKGE 125 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCCCeEEEEcCCCCCCcceeEEeccCHHHHHHHHHHHHHHHcCCCCE
Confidence 777788889999999976532 22233345556676544444332111 1122355 8899987766665 22 46
Q ss_pred EEEc
Q 009804 307 CCLI 310 (525)
Q Consensus 307 ~iLI 310 (525)
++++
T Consensus 126 I~~l 129 (298)
T cd06302 126 YAIF 129 (298)
T ss_pred EEEE
Confidence 6666
No 52
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.18 E-value=1.6 Score=45.80 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
++|.+++||||||+-.|..... ..+++|+||-
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN 99 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTIN 99 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEe
Confidence 6899999999999987765543 3467899984
No 53
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.99 E-value=1.7 Score=45.19 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.|.++++|||||+-.|..... ..+++|+||-
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin 94 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGIN 94 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEE
Confidence 6899999999999987765543 3357899885
No 54
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=80.78 E-value=26 Score=36.62 Aligned_cols=118 Identities=12% Similarity=0.161 Sum_probs=71.5
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~ 232 (525)
-.||++..--.-|=...+++++-..+.. +|. .+ +|..+.. .+..+
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~gy-~~--------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAARE-AGY-SL--------------------------------LLANTDDDPEKER 104 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHH-cCC-EE--------------------------------EEECCCCCHHHHH
Confidence 4677776544447777788888777754 442 22 3445554 34577
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--hhhHHHHHHhhhcCCccEE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD--~sG~IAl~aaLAs~~ad~i 308 (525)
++++.+..+++|++|+.|-...-. +.+.+.+.++++-+++-... +.+++. +| .+|+.|+.-=+..|+=.+.
T Consensus 105 ~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~~P~V~i~~~~~-~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~ 179 (333)
T COG1609 105 EYLETLLQKRVDGLILLGERPNDS----LLELLAAAGIPVVVIDRSPP-GLGVPSVGIDNFAGAYLATEHLIELGHRRIA 179 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHH----HHHHHHhcCCCEEEEeCCCc-cCCCCEEEEChHHHHHHHHHHHHHCCCceEE
Confidence 889999999999999999222222 22334445766544443222 344443 44 7888888777776544454
Q ss_pred Ec
Q 009804 309 LI 310 (525)
Q Consensus 309 LI 310 (525)
+|
T Consensus 180 ~i 181 (333)
T COG1609 180 FI 181 (333)
T ss_pred EE
Confidence 44
No 55
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=80.33 E-value=4.4 Score=44.37 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcc-hHHHHHHHHHHHHcCCceeEE
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGT-QKGASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS-~~~A~~L~e~~~~~g~~i~VI 275 (525)
.-.+|++.|++-++|+++..-.=|| .+.+..+.+++++.|+++..+
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i 370 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHI 370 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEE
Confidence 4578999999999999999977666 566677889999999664333
No 56
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=80.07 E-value=4.5 Score=44.32 Aligned_cols=44 Identities=20% Similarity=0.415 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcc-hHHHHHHHHHHHHcCCce
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGT-QKGASVIYEEVRRRGLKV 272 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS-~~~A~~L~e~~~~~g~~i 272 (525)
..-.+|++.|++-++|+++....=|| .+.+..+.+++++.|+++
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPv 367 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 34579999999999999999988776 556677889999999653
No 57
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=80.05 E-value=59 Score=31.31 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
..++++.+...++|++++.+.+.+.. +.+++++.++ ++|.+=.... .+++ .+| .+|.+|+..-+..+.-
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~i--pvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~ 117 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSPT--PVVLAGSVDEDNELPSVNIDYKKAAFEATELLIKNGHK 117 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCCC--CEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHcCCc
Confidence 45677778889999999998654432 3344445564 4555422211 1222 233 7888887766666567
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
+++++-
T Consensus 118 ~i~~l~ 123 (268)
T cd06298 118 KIAFIS 123 (268)
T ss_pred eEEEEe
Confidence 777773
No 58
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.83 E-value=1.8 Score=45.41 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+.|.++++|||||+-.|..... ..+++|+||..
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~ 104 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL 104 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec
Confidence 6899999999999987776543 23578999963
No 59
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.98 E-value=34 Score=33.21 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=68.0
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
|||+...-..|-.+.+++++-..+.+ +|. +++- .-+....+...+++
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~~~i 48 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YGY-TVLL-------------------------------CNTYRGGVSEADYV 48 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCCCChHHHHHHH
Confidence 67777666678888888888887764 442 2220 00111223456788
Q ss_pred HHHHHcCCCEEEEEcCCcc-hHHHHHHHHHHHHcCCceeEEEeeccccC--CCC--CCc--hhhHHHHHHhhhcCCccEE
Q 009804 236 DSIQDRGINQVYIIGGDGT-QKGASVIYEEVRRRGLKVVVAGIPKTIDN--DIP--VPL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS-~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--DI~--gtD--~sG~IAl~aaLAs~~ad~i 308 (525)
+.|...++|++++.+..-. ........+.+.+++++ ||.+=...++ +++ .+| .+|..|+.--+..+.-+++
T Consensus 49 ~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ip--vV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~~i~ 126 (273)
T cd06292 49 EDLLARGVRGVVFISSLHADTHADHSHYERLAERGLP--VVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALGHRRIG 126 (273)
T ss_pred HHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCC--EEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEE
Confidence 9999999999999985422 22122222445556754 5554333322 122 223 6677666555555455566
Q ss_pred Ec
Q 009804 309 LI 310 (525)
Q Consensus 309 LI 310 (525)
++
T Consensus 127 ~i 128 (273)
T cd06292 127 FA 128 (273)
T ss_pred EE
Confidence 55
No 60
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.66 E-value=62 Score=31.59 Aligned_cols=120 Identities=12% Similarity=-0.023 Sum_probs=69.8
Q ss_pred EEEEEcCCC-ChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC-CCCcHH
Q 009804 155 YACIVTCGG-LCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR-GGHDTS 232 (525)
Q Consensus 155 ~iaIvtsGG-~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR-~~~d~~ 232 (525)
|||+++-.- .-|-.+.++.++-+.+.. +|. ++. +..+.. ......
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~-~v~-------------------------------~~~~~~~~~~~~~ 47 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGV-DVE-------------------------------YRGPETFDVADMA 47 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCC-EEE-------------------------------EECCCCCCHHHHH
Confidence 467777544 467788888888877764 442 221 111222 122355
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-----CCC--CCc--hhhHHHHHHhhh-c
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-----DIP--VPL--LTWFIAMYATLA-S 302 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-----DI~--gtD--~sG~IAl~aaLA-s 302 (525)
+.++.|...++|++++.+.+..... ...+.++++|+ +||.+=...+. .+. .+| .+|.+++..-+. .
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~~--~~l~~~~~~~i--pvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~ 123 (271)
T cd06312 48 RLIEAAIAAKPDGIVVTIPDPDALD--PAIKRAVAAGI--PVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLAELK 123 (271)
T ss_pred HHHHHHHHhCCCEEEEeCCChHHhH--HHHHHHHHCCC--eEEEeCCCCCccccccceEEeccChHHHHHHHHHHHHHhc
Confidence 7788888899999999987653211 22244455664 45544111111 011 223 789988887777 6
Q ss_pred CCccEEEcC
Q 009804 303 RDVDCCLIP 311 (525)
Q Consensus 303 ~~ad~iLIP 311 (525)
+.-.++++.
T Consensus 124 g~~~i~~i~ 132 (271)
T cd06312 124 GGKNVLCVI 132 (271)
T ss_pred CCCeEEEEe
Confidence 666777664
No 61
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=78.50 E-value=64 Score=30.90 Aligned_cols=118 Identities=9% Similarity=-0.006 Sum_probs=68.2
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+|||+...-..|-.+.+++++.+.+.. +|. ++.-+. +........++
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~-~g~-~~~~~~-------------------------------~~~~~~~~~~~ 47 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARA-AGY-SLLLAT-------------------------------TDYDAEREADA 47 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHH-CCC-EEEEee-------------------------------CCCCHHHHHHH
Confidence 367777655678889999999888864 552 332110 11111234567
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
++.|...++|++++..++.... ...+.+++.|++ +|.+=...+..++ .+| .+|.+++.--+..+.-.++++
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~ip--vV~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i 122 (266)
T cd06282 48 VETLLRQRVDGLILTVADAATS---PALDLLDAERVP--YVLAYNDPQPGRPSVSVDNRAAARDVAQALAALGHRRIAML 122 (266)
T ss_pred HHHHHhcCCCEEEEecCCCCch---HHHHHHhhCCCC--EEEEeccCCCCCCEEeeCcHHHHHHHHHHHHHcCcccEEEe
Confidence 7888889999999987765322 133555566755 4433111111122 233 778888766655544556666
No 62
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.39 E-value=1.8 Score=44.58 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred cCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 241 RGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 241 ~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
.+.|.++++|||||+-.|..++ ..+++|+|||.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~ 88 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM 88 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC
Confidence 4789999999999998766532 23578999984
No 63
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=77.94 E-value=2.1 Score=47.81 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
++|.+|+||||||+-.|..... ...++|+||
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGI 292 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPF 292 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEE
Confidence 6899999999999988776643 345778988
No 64
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=77.45 E-value=60 Score=31.15 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=67.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~~i 234 (525)
|+++.....-|-...++.++.+.+.. +|. +++ +..+... .....+
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~~~ 47 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEARE-AGY-GVL--------------------------------LGDTRSDPEREQEY 47 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHH-cCC-eEE--------------------------------EecCCCChHHHHHH
Confidence 56676666778888888888887764 442 332 1111222 224567
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhhcCCccEEE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLAs~~ad~iL 309 (525)
++.+...++|++++.+.+.... +.+.. +.+ ++||.+-...+ +.++ ++| .+|..|+.--+..+..++++
T Consensus 48 ~~~~~~~~vdgiii~~~~~~~~----~~~~~-~~~--ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~ 120 (267)
T cd06284 48 LDLLRRKQADGIILLDGSLPPT----ALTAL-AKL--PPIVQACEYIPGLAVPSVSIDNVAAARLAVDHLISLGHRRIAL 120 (267)
T ss_pred HHHHHHcCCCEEEEecCCCCHH----HHHHH-hcC--CCEEEEecccCCCCcceEEecccHHHHHHHHHHHHcCCceEEE
Confidence 8889999999999988764433 21222 335 45665533333 2222 244 77887776655555566776
Q ss_pred c
Q 009804 310 I 310 (525)
Q Consensus 310 I 310 (525)
+
T Consensus 121 l 121 (267)
T cd06284 121 I 121 (267)
T ss_pred E
Confidence 6
No 65
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=77.04 E-value=62 Score=32.65 Aligned_cols=121 Identities=8% Similarity=0.079 Sum_probs=69.2
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
...|||+...-.-|-.+.+++++...+.. +|. ++.- ..+........
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 107 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQ-RGY-QLLI-------------------------------ACSDDQPDNEM 107 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHH-cCC-EEEE-------------------------------EeCCCCHHHHH
Confidence 35788888655567788888888777754 442 2210 00111112245
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhhcCCccE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
++++.|...++|++++.+.+..... ..+.+.+.+++ ||.+=...+ .++. .+| .+|+.|+.--+..++-++
T Consensus 108 ~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~l~~~~iP--vV~v~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~r~I 182 (328)
T PRK11303 108 RCAEHLLQRQVDALIVSTSLPPEHP---FYQRLQNDGLP--IIALDRALDREHFTSVVSDDQDDAEMLAESLLKFPAESI 182 (328)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCChH---HHHHHHhcCCC--EEEECCCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCCeE
Confidence 6788888999999999887543221 22344445655 554321111 1122 234 678877765566666677
Q ss_pred EEcC
Q 009804 308 CLIP 311 (525)
Q Consensus 308 iLIP 311 (525)
+++-
T Consensus 183 ~~i~ 186 (328)
T PRK11303 183 LLLG 186 (328)
T ss_pred EEEe
Confidence 7763
No 66
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=76.79 E-value=83 Score=31.97 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=72.5
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||++...-..|=...+++++-..+.. +|. +++- .-+....+...
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 105 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQ-KGY-TLIL-------------------------------CNAWNNLEKQR 105 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCCCCHHHHH
Confidence 35889888776677778888888777754 452 2221 00111122345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-cCCceeEEEeecc-cc-CCCCCCc--hhhHHHHHHhhhcCCccE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-RGLKVVVAGIPKT-ID-NDIPVPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-~g~~i~VIgIPKT-ID-NDI~gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
+.++.+..+++|++++.+++.+.... +.+.+ .++++-++.-+.. .+ -+..++| .+|++|+..-+..|.-++
T Consensus 106 ~~i~~l~~~~vdgiii~~~~~~~~~~----~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~G~~~i 181 (341)
T PRK10703 106 AYLSMLAQKRVDGLLVMCSEYPEPLL----AMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGRYLIERGHRDI 181 (341)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHHHH----HHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHHHHHHHHHCCCCcE
Confidence 67788889999999999876443222 33333 4655433332211 11 1222344 579999887777767788
Q ss_pred EEcC
Q 009804 308 CLIP 311 (525)
Q Consensus 308 iLIP 311 (525)
.+|-
T Consensus 182 ~~i~ 185 (341)
T PRK10703 182 GVIP 185 (341)
T ss_pred EEEe
Confidence 8774
No 67
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=76.18 E-value=5.3 Score=42.20 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc--------------CCceeEEEeeccccCCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR--------------GLKVVVAGIPKTIDNDIPV 287 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~--------------g~~i~VIgIPKTIDNDI~g 287 (525)
.+.+++++.+++.++|.+|-|||.-+++.|..++-..... +-.+++|.||-|--+--..
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~ 137 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEV 137 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccc
Confidence 4688999999999999999999999999999988765421 1127899999997664443
No 68
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.60 E-value=61 Score=31.47 Aligned_cols=120 Identities=8% Similarity=0.007 Sum_probs=70.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCC-eEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGV-KRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~-~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
+|||+...=.-|-...+++++.+.+.. +|. .+++ +..+... ....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~-~~~~~~~~--------------------------------~~~~~~~~~~~~ 47 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKK-LNPGVKVT--------------------------------VVSADYDLNKQV 47 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHH-hCCCeEEE--------------------------------EccCCCCHHHHH
Confidence 477888766678888899999888764 221 1111 1112222 2345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCC--CCCc--hhhHHHHHHhhhc--CCcc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDI--PVPL--LTWFIAMYATLAS--RDVD 306 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI--~gtD--~sG~IAl~aaLAs--~~ad 306 (525)
.+++.+...++|++++.+.+.. ......++++++++ +||.+-...++.. -++| .+|..++..-++. +.-+
T Consensus 48 ~~i~~~~~~~~dgiIi~~~~~~--~~~~~i~~~~~~~i--pvv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~ 123 (271)
T cd06321 48 SQIDNFIAAKVDLILLNAVDSK--GIAPAVKRAQAAGI--VVVAVDVAAEGADATVTTDNVQAGEISCQYLADRLGGKGN 123 (271)
T ss_pred HHHHHHHHhCCCEEEEeCCChh--HhHHHHHHHHHCCC--eEEEecCCCCCccceeeechHHHHHHHHHHHHHHhCCCce
Confidence 6778888999999999876543 11222345556665 4555533222211 2344 6788877666554 5677
Q ss_pred EEEcC
Q 009804 307 CCLIP 311 (525)
Q Consensus 307 ~iLIP 311 (525)
+.+|-
T Consensus 124 i~~i~ 128 (271)
T cd06321 124 VAILN 128 (271)
T ss_pred EEEEe
Confidence 77774
No 69
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=74.76 E-value=74 Score=31.98 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=68.7
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||++...-.-|-.+.++.++-..+.+ +|. +++- .-+........
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 102 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFE-RGY-SLVL-------------------------------CNTEGDEQRMN 102 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHH-cCC-EEEE-------------------------------EeCCCCHHHHH
Confidence 35788887655567788888888887764 442 2210 00111112345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe-eccccCCCCCCc--hhhHHHHHHhhhcCCccEEE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI-PKTIDNDIPVPL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI-PKTIDNDI~gtD--~sG~IAl~aaLAs~~ad~iL 309 (525)
++++.|..+++|++++.+.+.+......+.+ ..++++-+++- +..-..+....| .+|+.|+.--+..|+-.+.+
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~---~~~iPvV~i~~~~~~~~~~~v~~d~~~~~~~a~~~L~~~G~~~I~~ 179 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTETHQPSREIMQR---YPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGYTRIAC 179 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCcchhhHHHHHh---cCCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEE
Confidence 6778888999999999987754322222211 12544333332 111111222344 57899887666666667777
Q ss_pred c
Q 009804 310 I 310 (525)
Q Consensus 310 I 310 (525)
|
T Consensus 180 i 180 (327)
T PRK10423 180 I 180 (327)
T ss_pred E
Confidence 6
No 70
>PRK00861 putative lipid kinase; Reviewed
Probab=73.88 E-value=7.2 Score=39.97 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
..+..++++...+.+.|.++++|||||+..+.. .+...+ +++.-||.===||+.
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~~~--~~lgviP~GTgNdfA 96 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVAG---ALIGTD--IPLGIIPRGTANAFA 96 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhcCC--CcEEEEcCCchhHHH
Confidence 345677777777888999999999999887642 222233 456667876667653
No 71
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=73.46 E-value=7.3 Score=40.74 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH--cCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR--RGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~--~g~~i~VIgIPKTI 281 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-.... ..-.+++|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 65 EVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCC
Confidence 347799999999999999999999999999987654332 11236899999995
No 72
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=73.41 E-value=38 Score=32.52 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHH---cCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 228 GHDTSKIVDSIQD---RGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 228 ~~d~~~iv~~l~~---~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
.-|..-+++.++- .++|.++++-||+-++- |.+.++++|..+-++|.|+.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 5678888888776 69999999999999986 44556678999999998764
No 73
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=73.24 E-value=89 Score=29.95 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
..++++.+...++|++++.+.+..... ..+++.+.|+ +||.+=...++ ++. +.| .+|.+|+.--+..+.-
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~~~---~~~~~~~~~i--pvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~ 118 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGTSPD---LLKRLAESGI--PVVLVAREVAGAPFDYVGPDNAAGARLATEHLISLGHR 118 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHH---HHHHHHhcCC--CEEEEeccCCCCCCCEEeecchHHHHHHHHHHHHCCCC
Confidence 457788899999999999987654322 2344555565 45655333332 222 233 7788887755555555
Q ss_pred cEEEc
Q 009804 306 DCCLI 310 (525)
Q Consensus 306 d~iLI 310 (525)
+++++
T Consensus 119 ~i~~l 123 (268)
T cd06289 119 RIAFI 123 (268)
T ss_pred CEEEe
Confidence 67766
No 74
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=73.16 E-value=3.5 Score=42.84 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.|.++++|||||+..|..... +.+++++||-
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn 94 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN 94 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc
Confidence 5899999999999988766532 3457899986
No 75
>PLN02727 NAD kinase
Probab=73.13 E-value=3.2 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
++|.+|+||||||+-.|..+.. +..++|+||-
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGIN 774 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFN 774 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEe
Confidence 6899999999999988877653 3457789884
No 76
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=72.77 E-value=82 Score=32.60 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC-CCCc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR-GGHD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR-~~~d 230 (525)
+..+||++..+-..|--+.+++++...+.. +|. ++. +.++. ....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g~-~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LGA-KVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EECCCCCHHH
Confidence 568999999888899999999999888864 452 232 11111 1233
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CC---CCCc--hhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DI---PVPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI---~gtD--~sG~IAl~aaLAs~~ 304 (525)
..+.++.|..+++|++++.+.+.... ....+.+.+++ ++||.+-..+++ ++ ..+| .+|..++.--+..++
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~ 145 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMINNADIDFYISFDNEKVGELQAKALVDKVP 145 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCCCCCCccEEEecCHHHHHHHHHHHHHHhcC
Confidence 56778889999999999997653311 12224445556 456766554543 22 2345 566666544444434
Q ss_pred ccE
Q 009804 305 VDC 307 (525)
Q Consensus 305 ad~ 307 (525)
-.+
T Consensus 146 ~~i 148 (330)
T PRK10355 146 QGN 148 (330)
T ss_pred CCC
Confidence 343
No 77
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.79 E-value=73 Score=31.52 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=73.0
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+||++...-.-|....++.++...+.. +|. +++ +.-+.....+..++
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~gy-~~~-------------------------------~~~~~~~~~~~~~~ 48 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IGW-NLR-------------------------------ILDGRGSEAGQAAA 48 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cCc-EEE-------------------------------EECCCCCHHHHHHH
Confidence 688888776788888899999888864 442 221 00111122335678
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee-ccccC----CC--CCCc--hhhHHHHHHhhhc--C
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP-KTIDN----DI--PVPL--LTWFIAMYATLAS--R 303 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP-KTIDN----DI--~gtD--~sG~IAl~aaLAs--~ 303 (525)
++.+..+++|++++.+.+..... ..+ +.+.+.++++-+++-+ ..-+. .. -.+| .+|+.++.--+.. |
T Consensus 49 i~~l~~~~vdgiil~~~~~~~~~-~~~-~~~~~~~iPvV~~d~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~L~~~~~G 126 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDAAELQ-AEL-ELAQKAGIPVVGWHAGPEPGPIEEPGIFYNVTTDPLAVAEVAALYAIANSGG 126 (280)
T ss_pred HHHHHHcCCCEEEEcCCCHHHHH-HHH-HHHHHCCCCEEEecCCCCCCcccCCceeEEecCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999986533211 112 3344456655444432 11110 12 2355 7888887666555 5
Q ss_pred CccEEEcC
Q 009804 304 DVDCCLIP 311 (525)
Q Consensus 304 ~ad~iLIP 311 (525)
.-.++++.
T Consensus 127 ~~~i~~i~ 134 (280)
T cd06315 127 KAGVVIFT 134 (280)
T ss_pred CceEEEEe
Confidence 67787874
No 78
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=71.72 E-value=99 Score=29.81 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=71.2
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+|||+...=..|..+.+++++-+.+.. +|. ++.- +-+........+.
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~~~ 47 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYK-KGY-KLIL-------------------------------CNSDNDPEKEREY 47 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHH-CCC-eEEE-------------------------------ecCCccHHHHHHH
Confidence 367777666778899999999887764 552 3321 0011111234577
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
++.+...++|++++.+.+... +++.+.|++ ||.+=...+++++ ++| .+|..|+..-+..+.-++.++
T Consensus 48 i~~~~~~~~dgiii~~~~~~~-------~~~~~~gip--vv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~i~~i 118 (265)
T cd06291 48 LEMLRQNQVDGIIAGTHNLGI-------EEYENIDLP--IVSFDRYLSENIPIVSSDNYEGGRLAAEELIERGCKHIAHI 118 (265)
T ss_pred HHHHHHcCCCEEEEecCCcCH-------HHHhcCCCC--EEEEeCCCCCCCCeEeechHHHHHHHHHHHHHcCCcEEEEE
Confidence 788999999999999876442 133344654 5544444444444 344 778888766666555667776
Q ss_pred C
Q 009804 311 P 311 (525)
Q Consensus 311 P 311 (525)
-
T Consensus 119 ~ 119 (265)
T cd06291 119 G 119 (265)
T ss_pred c
Confidence 4
No 79
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.01 E-value=4.2 Score=46.07 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
++|.+|+||||||+-.|..... ..+++|+||--
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~ 380 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM 380 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC
Confidence 6899999999999987766543 34578999853
No 80
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=69.93 E-value=9.6 Score=38.74 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHH-HHHHHHHcCCceeEEE-eeccccCCC
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASV-IYEEVRRRGLKVVVAG-IPKTIDNDI 285 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~-L~e~~~~~g~~i~VIg-IPKTIDNDI 285 (525)
..++...+.+.+.++++|||||+..+.. |.+ .. +.+.+| ||.==-||+
T Consensus 48 ~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~ 97 (293)
T TIGR00147 48 RYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDF 97 (293)
T ss_pred HHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHH
Confidence 3444455668999999999999987553 432 11 122455 786444544
No 81
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.64 E-value=1.1e+02 Score=29.37 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=67.5
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
||++...=.-|-...++.++...+.. +|. ++. ++.+.. ..+..+++
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~-~g~-~~~-------------------------------~~~~~~-~~~~~~~i 47 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQA-RGY-QPL-------------------------------LINTDD-DEDLDAAL 47 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHH-CCC-eEE-------------------------------EEcCCC-CHHHHHHH
Confidence 56666544566677788888777654 452 221 011111 11455677
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCCC--Cc--hhhHHHHHHhhhcCCccEEEc
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIPV--PL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~g--tD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+.+.+.++|++++...+.+.. ..+.+.+.|+ +||.+=..++ +.+.. +| .+|..|+.--+..+.-.++++
T Consensus 48 ~~~~~~~vdgiii~~~~~~~~----~~~~~~~~~i--pvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i 121 (266)
T cd06278 48 RQLLQYRVDGVIVTSGTLSSE----LAEECRRNGI--PVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAKGCRRIAFI 121 (266)
T ss_pred HHHHHcCCCEEEEecCCCCHH----HHHHHhhcCC--CEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHCCCceEEEE
Confidence 888899999999988764432 2344455564 4665533232 22222 33 778887766666656677777
Q ss_pred CCC
Q 009804 311 PES 313 (525)
Q Consensus 311 PE~ 313 (525)
-..
T Consensus 122 ~~~ 124 (266)
T cd06278 122 GGP 124 (266)
T ss_pred cCC
Confidence 433
No 82
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=69.29 E-value=85 Score=30.32 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ 304 (525)
...++++.|..+++|++++.+.+..-.. + +.+++.++ +||.+=..+++ .++ .+| .+|+.++..-+..+.
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~~i--pvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~ 116 (264)
T cd06274 43 TERETVETLIARQVDALIVAGSLPPDDP---Y-YLCQKAGL--PVVALDRPGDPSRFPSVVSDNRDGAAELTRELLAAPP 116 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCchHH---H-HHHHhcCC--CEEEecCccCCCCCCEEEEccHHHHHHHHHHHHHCCC
Confidence 4567888999999999999987643221 2 34445565 45555222221 122 233 778888776666655
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-.++++-
T Consensus 117 ~~i~~i~ 123 (264)
T cd06274 117 EEVLFLG 123 (264)
T ss_pred CcEEEEe
Confidence 6777763
No 83
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=68.79 E-value=11 Score=40.02 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC--------------CceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG--------------LKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g--------------~~i~VIgIPKTIDNDI~ 286 (525)
+..+++++.+++.++|.++-|||--.++.|..++-....-+ -.+++|.||-|--.+-.
T Consensus 70 ~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE 141 (374)
T cd08189 70 ENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSE 141 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccc
Confidence 35789999999999999999999999999988875443211 12689999998644433
No 84
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=68.51 E-value=10 Score=39.86 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND 284 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND 284 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-.. ++++|.||-|-.++
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 3578999999999999999999999999999887532 46799999986444
No 85
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=68.51 E-value=90 Score=30.48 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=64.4
Q ss_pred EEEEEcCCC--ChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 155 YACIVTCGG--LCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 155 ~iaIvtsGG--~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
||||+...+ .-|-...++.++-+.+.. +|. +++ +..+. ..++..
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~-~gy-~~~-------------------------------~~~~~-~~~~~~ 46 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKE-LGV-EVK-------------------------------YVESV-EDADYE 46 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHh-cCc-eEE-------------------------------EEecC-CHHHHH
Confidence 577777642 367778888888777654 442 221 11122 223455
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-CCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhc-CCcc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLAS-RDVD 306 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs-~~ad 306 (525)
++++.|...++|++++.+.+-. ..+.+.+++. +.++.++.-+..-+.++. .+| .+|+.|.+..... +.-.
T Consensus 47 ~~~~~l~~~~vdgiii~~~~~~----~~~~~~~~~~~~ipvv~~~~~~~~~~~~~~v~~d~~~~~~~a~~l~~~~~g~~~ 122 (260)
T cd06304 47 PNLRQLAAQGYDLIFGVGFGFM----DAVEKVAKEYPDVKFAIIDGVVDAPPNVASYVFREYEGSYLAGVLAALMTKTGK 122 (260)
T ss_pred HHHHHHHHcCCCEEEECCcchh----HHHHHHHHHCCCCEEEEecCccCCCCCeeeeecchHHHHHHHHHHHHHhccCCc
Confidence 7888899999999999875521 1222333332 444444433321102222 345 7788887544321 4566
Q ss_pred EEEc
Q 009804 307 CCLI 310 (525)
Q Consensus 307 ~iLI 310 (525)
+.+|
T Consensus 123 I~~i 126 (260)
T cd06304 123 VGFV 126 (260)
T ss_pred eEEE
Confidence 7777
No 86
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=68.36 E-value=9.4 Score=40.38 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-------------GLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-------------g~~i~VIgIPKTIDNDI~ 286 (525)
+...++++.+++.+.|.++-|||--.++.|..++-..... .-.+++|.||-|--.+-.
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse 137 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSE 137 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhh
Confidence 4578999999999999999999999999999887543110 114689999999766543
No 87
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=67.95 E-value=10 Score=40.49 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc--------------CCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR--------------GLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~--------------g~~i~VIgIPKTI 281 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-.+... ...+++|.||-|-
T Consensus 71 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 137 (383)
T cd08186 71 DQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTH 137 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCC
Confidence 4578999999999999999999999999998887543211 1136789999873
No 88
>PRK13054 lipid kinase; Reviewed
Probab=67.78 E-value=11 Score=38.79 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHH-HHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAS-VIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
..+..++++...+.+.+.++++|||||+..+. .|.+. ..+.++++.-||.==-||+.
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa 99 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA 99 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH
Confidence 34566677776677899999999999988754 33321 01334567778987777764
No 89
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=67.57 E-value=1.2e+02 Score=29.27 Aligned_cols=116 Identities=8% Similarity=0.004 Sum_probs=70.2
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~~i 234 (525)
|||+.-.-.-|=.+.+++++...+.. +|. ++. +..+.. .+...++
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~~~~ 47 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARK-AGK-HLI--------------------------------ITAGHHSAEKEREA 47 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCchHHHHHH
Confidence 56666555567778888888887764 452 221 111111 1234578
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC---CCCCc--hhhHHHHHHhhhcCCccEEE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND---IPVPL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND---I~gtD--~sG~IAl~aaLAs~~ad~iL 309 (525)
++.+...++|++++.+-+.+... .+.+.+.|+ ++|.+-...+.+ .-.+| .+|..|+..-+..+.-++.+
T Consensus 48 i~~~~~~~vdgii~~~~~~~~~~----~~~~~~~~i--pvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~ 121 (268)
T cd06270 48 IEFLLERRCDALILHSKALSDDE----LIELAAQVP--PLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELGHRKIAC 121 (268)
T ss_pred HHHHHHcCCCEEEEecCCCCHHH----HHHHhhCCC--CEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCCCceEEE
Confidence 88888999999999986543321 234455565 456554433321 12244 88888887777776667777
Q ss_pred cC
Q 009804 310 IP 311 (525)
Q Consensus 310 IP 311 (525)
|-
T Consensus 122 i~ 123 (268)
T cd06270 122 IT 123 (268)
T ss_pred Ee
Confidence 64
No 90
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=67.55 E-value=1.2e+02 Score=29.18 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhhcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLAs~~ 304 (525)
...+.++.|...++|++++++.+.+... .+.++++++ +||.+=...+ ..++ ++| .+|..++.--+..+.
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~i--Pvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~ 116 (268)
T cd06273 43 REYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRGV--PYVATWNYSPDSPYPCVGFDNREAGRLAARHLIALGH 116 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCCC--CEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCC
Confidence 3456777888889999999987644322 234445564 4555421111 1122 233 778877766665555
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-++++|-
T Consensus 117 ~~i~~i~ 123 (268)
T cd06273 117 RRIAMIF 123 (268)
T ss_pred CeEEEEe
Confidence 6777773
No 91
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.18 E-value=1.2e+02 Score=29.15 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc--CCCC--CCc--hhhHHHHHHhhhcC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID--NDIP--VPL--LTWFIAMYATLASR 303 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID--NDI~--gtD--~sG~IAl~aaLAs~ 303 (525)
...+.++.+...++|++++...+..-. ..+.+.+++ ++||.+=.+.+ ..++ ++| .+|.+|+..-++.+
T Consensus 43 ~~~~~i~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~i~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g 116 (270)
T cd06296 43 PERQWVERLSARRTDGVILVTPELTSA----QRAALRRTG--IPFVVVDPAGDPDADVPSVGATNWAGGLAATEHLLELG 116 (270)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCChH----HHHHHhcCC--CCEEEEecccCCCCCCCEEEeCcHHHHHHHHHHHHHcC
Confidence 355778889999999999988764422 234445556 45665544332 2333 334 78999887766665
Q ss_pred CccEEEcCC
Q 009804 304 DVDCCLIPE 312 (525)
Q Consensus 304 ~ad~iLIPE 312 (525)
.-+++++--
T Consensus 117 ~~~i~~i~~ 125 (270)
T cd06296 117 HRRIGFITG 125 (270)
T ss_pred CCcEEEEcC
Confidence 667777743
No 92
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.17 E-value=5.7 Score=41.38 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+.|.++++|||||+-.+..... ..+++|+||..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~ 94 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR 94 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC
Confidence 6899999999999987765432 34578999974
No 93
>PRK13055 putative lipid kinase; Reviewed
Probab=67.13 E-value=10 Score=39.86 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHH-HHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAS-VIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.+..++++.+.+.+.+.|+++|||||+..+. .|.+ .+..+++--||.==-||+.
T Consensus 46 ~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA 100 (334)
T PRK13055 46 NSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA 100 (334)
T ss_pred ccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH
Confidence 3556667666678899999999999988654 3332 2223445567876667754
No 94
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.12 E-value=1.2e+02 Score=29.17 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=68.4
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCccccccc-CCCCcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTS-RGGHDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSs-R~~~d~~~i 234 (525)
|||+...=.-|-.+.++.++.+.+.+ ++. +++ +.++ .........
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~-~~~-~~~--------------------------------~~~~~~~~~~~~~~ 47 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAE-RGY-STF--------------------------------VANTGDNPDAQRRA 47 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCHHHHHHH
Confidence 56666543467778888888887764 442 221 1111 111234577
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
++.+..+++|++++.+-+.... .+ +++.+.++++ |.+=...+ +++ .+| .+|.+|+.--+..+.-+++++
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~~iPv--v~~~~~~~-~~~~V~~d~~~ag~~a~~~L~~~g~~~i~~i 120 (265)
T cd06285 48 IEMLLDRRVDGLILGDARSDDH---FL-DELTRRGVPF--VLVLRHAG-TSPAVTGDDVLGGRLATRHLLDLGHRRIAVL 120 (265)
T ss_pred HHHHHHcCCCEEEEecCCCChH---HH-HHHHHcCCCE--EEEccCCC-CCCEEEeCcHHHHHHHHHHHHHCCCccEEEE
Confidence 8889999999999987554432 23 4445557554 44433322 333 234 888888766666666677777
Q ss_pred CC
Q 009804 311 PE 312 (525)
Q Consensus 311 PE 312 (525)
-.
T Consensus 121 ~~ 122 (265)
T cd06285 121 AG 122 (265)
T ss_pred eC
Confidence 43
No 95
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=67.09 E-value=12 Score=39.63 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV 287 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g 287 (525)
+..+++++.+++.+.|.++.|||--.++.|..++ + .++ +++|.||-|.-+|-..
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~tds~~ 127 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAASHDGIA 127 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCccCCccc
Confidence 4578999999999999999999999999998887 2 346 5699999998666443
No 96
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=66.43 E-value=1.3e+02 Score=29.32 Aligned_cols=76 Identities=8% Similarity=-0.021 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC----CCCCc--hhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND----IPVPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND----I~gtD--~sG~IAl~aaLAs~~ 304 (525)
..+.++.+..+++|++++.+.+.+.. . .+ ++++++|++ ||.+=.-++++ .-++| .+|.+++.--+..+.
T Consensus 46 ~~~~i~~~~~~~vdgiI~~~~~~~~~-~-~~-~~~~~~giP--vV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~ 120 (268)
T cd06306 46 QIAQLEDCAAWGADAILLGAVSPDGL-N-EI-LQQVAASIP--VIALVNDINSPDITAKVGVSWYEMGYQAGEYLAQRHP 120 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChhhH-H-HH-HHHHHCCCC--EEEeccCCCCcceeEEecCChHHHHHHHHHHHHHHhh
Confidence 44678888899999999987664322 1 23 445566754 55441111211 12344 778888765554433
Q ss_pred -----ccEEEcC
Q 009804 305 -----VDCCLIP 311 (525)
Q Consensus 305 -----ad~iLIP 311 (525)
-+++++.
T Consensus 121 ~~~~~~~i~~l~ 132 (268)
T cd06306 121 KGSKPAKVAWFP 132 (268)
T ss_pred cCCCCceEEEEe
Confidence 5677763
No 97
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=66.13 E-value=13 Score=38.87 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP 288 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt 288 (525)
+..+++++.+++.+.|.+|.|||--.++.|..++. .++ +++|.||-|.-+|-..+
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~---~~~--~p~i~iPTT~~t~s~~s 119 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAY---KLG--IPFISVPTAASHDGIAS 119 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHH---hcC--CCEEEecCcccCCcccC
Confidence 45788999999999999999999999999998873 235 67999999987665443
No 98
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=66.12 E-value=1.3e+02 Score=29.12 Aligned_cols=120 Identities=9% Similarity=0.010 Sum_probs=69.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhc---CCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMY---GVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~---g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
||||+...-.-|....+++++-+.+.. + |. ++ ++ ++..+... ..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~~~~g~-~~-------------~l-----------------~i~~~~~~~~~ 48 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKE-LKKAGL-IS-------------EF-----------------IVTSADGDVAQ 48 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHh-hhccCC-ee-------------EE-----------------EEecCCCCHHH
Confidence 577887666778888888888777754 3 21 00 01 12222322 23
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhc--C
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLAS--R 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs--~ 303 (525)
..+.++.+...++|++++.+.+.. ......+.+++++ ++||.+-..++. .+. .+| .+|+.++..-+.. +
T Consensus 49 ~~~~~~~~~~~~vdgiIi~~~~~~--~~~~~l~~~~~~~--iPvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g 124 (272)
T cd06300 49 QIADIRNLIAQGVDAIIINPASPT--ALNPVIEEACEAG--IPVVSFDGTVTTPCAYNVNEDQAEFGKQGAEWLVKELGG 124 (272)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh--hhHHHHHHHHHCC--CeEEEEecCCCCCceeEecCCHHHHHHHHHHHHHHHcCC
Confidence 557778888899999999987632 1122234455556 456666443332 222 344 7788777655554 4
Q ss_pred CccEEEc
Q 009804 304 DVDCCLI 310 (525)
Q Consensus 304 ~ad~iLI 310 (525)
.-.+++|
T Consensus 125 ~~~i~~i 131 (272)
T cd06300 125 KGNVLVV 131 (272)
T ss_pred CceEEEE
Confidence 4456665
No 99
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=65.83 E-value=9.9 Score=39.43 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-... ++ +++|.||-|.-.+-.
T Consensus 65 ~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~~--~p~i~iPTt~~tgse 119 (332)
T cd07766 65 EEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-RG--LPIIIVPTTAATGSE 119 (332)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-CC--CCEEEEeCCCchhhc
Confidence 45788999999999999999999999999998876542 35 579999999877643
No 100
>PRK13337 putative lipid kinase; Reviewed
Probab=65.80 E-value=12 Score=38.48 Aligned_cols=54 Identities=26% Similarity=0.331 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHH-HHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASV-IYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~-L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.+..++++.+.+.+.+.|+++|||||...+.. |.+ .+.++++--||.==-||+.
T Consensus 44 ~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~----~~~~~~lgiiP~GT~NdfA 98 (304)
T PRK13337 44 GDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE----KENRPKLGIIPVGTTNDFA 98 (304)
T ss_pred CCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh----CCCCCcEEEECCcCHhHHH
Confidence 45667777777788999999999999887653 332 2333456667876667664
No 101
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=65.79 E-value=19 Score=39.98 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=58.7
Q ss_pred eEEEEEccchhhhccCCeEeCChhhhhcccccCc---ccccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHH-HH
Q 009804 186 KRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG---TVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAS-VI 261 (525)
Q Consensus 186 ~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GG---tiLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L 261 (525)
.+++-|.|=..|= +.-..+-++.+..+....| .+.-|.+. .+..++++.+...+.|.++++|||||+..+. -|
T Consensus 112 kr~lvIvNP~SGk--g~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGK--KSASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCC--cchhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 4777777776662 2222222234554444444 23344433 4566677777778899999999999987643 33
Q ss_pred HHHH-HHcCCceeEEEeeccccCCCC
Q 009804 262 YEEV-RRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 262 ~e~~-~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.+.- .+.+.++++--||.==-||+.
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfA 214 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMA 214 (481)
T ss_pred hhCccccccccCceEEecCcCcchhh
Confidence 2110 001345777788998888875
No 102
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=65.57 E-value=18 Score=34.43 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..++.++ ||.-. ++..++..+...|++.+|.|.++||.+..+.+ +.++.|...+-.++=.+=+-+..+
T Consensus 46 ~~~v~ll--G~~~~----~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~------~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 46 GLRVFLL--GAKPE----VLEKAAERLRARYPGLKIVGYHHGYFGPEEEE------EIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CCeEEEE--CCCHH----HHHHHHHHHHHHCCCcEEEEecCCCCChhhHH------HHHHHHHHcCCCEEEEECCCCHHH
Confidence 4566666 55544 66777777777899999999999998843321 245666666655554444445455
Q ss_pred HHHHHHHHc-CCCEEEEEcC
Q 009804 233 KIVDSIQDR-GINQVYIIGG 251 (525)
Q Consensus 233 ~iv~~l~~~-~Id~L~vIGG 251 (525)
+.+..++++ +-..++.+||
T Consensus 114 ~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 114 LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHCCCCEEEEece
Confidence 555544444 5667777887
No 103
>PRK11914 diacylglycerol kinase; Reviewed
Probab=65.50 E-value=10 Score=38.96 Aligned_cols=53 Identities=26% Similarity=0.498 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.+..++++.+.+.+.|.++++|||||...+. +.+. +.++++.-||.==-||+.
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv---~~l~--~~~~~lgiiP~GT~NdfA 103 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNAL---QVLA--GTDIPLGIIPAGTGNDHA 103 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHh---HHhc--cCCCcEEEEeCCCcchhH
Confidence 4567777777788899999999999998654 2222 234566778987788876
No 104
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=65.44 E-value=29 Score=38.38 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
+.+|||||| +.. +|||-+...+.++++..+|+-+.- .|+ |=. ..+++-
T Consensus 135 p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt----------------~VQ-----G~~------A~~eIv 182 (440)
T COG1570 135 PKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPT----------------LVQ-----GEG------AAEEIV 182 (440)
T ss_pred CCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEec----------------ccc-----CCC------cHHHHH
Confidence 469999998 555 689999888888887545543211 111 110 013456
Q ss_pred HHHHHHHHcC-CCEEEEEcCCcchHHHHHHHHHHHHc---CCceeEE
Q 009804 233 KIVDSIQDRG-INQVYIIGGDGTQKGASVIYEEVRRR---GLKVVVA 275 (525)
Q Consensus 233 ~iv~~l~~~~-Id~L~vIGGdgS~~~A~~L~e~~~~~---g~~i~VI 275 (525)
++++.+.+.+ +|.|||.=|.||..--..+.+|...| ..+|+||
T Consensus 183 ~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvI 229 (440)
T COG1570 183 EAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVI 229 (440)
T ss_pred HHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeE
Confidence 6666777776 99999999999999999888876554 4456666
No 105
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=65.30 E-value=13 Score=39.23 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+..+++++.+++.++|.++-|||--.++.|..++-.. .+++|.||-|--.+-.
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtgse 115 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATCAA 115 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccCcc
Confidence 4578999999999999999999999999999987643 3679999999755443
No 106
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=65.30 E-value=1.4e+02 Score=29.52 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=68.0
Q ss_pred EEEEEcCC---CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 155 YACIVTCG---GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 155 ~iaIvtsG---G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
|||++... -.-|-.+.++.++.+.+.+ +|. ++.- ..+....+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~gy-~~~i--------------------------------~~~~~~~~~ 46 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LGI-EYKY--------------------------------VESKSDADY 46 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cCC-eEEE--------------------------------EecCCHHHH
Confidence 47777765 3679999999999988865 553 2221 011112335
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-CCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhh-cCCc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLA-SRDV 305 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLA-s~~a 305 (525)
.+.++.|..+++|++++.+-. +.. .+.+..++. +.++.+++-+..-..+++ .+| .+|+.|.+.... .+.-
T Consensus 47 ~~~i~~l~~~~vdgiI~~~~~--~~~--~~~~~~~~~~~~PiV~i~~~~~~~~~~~~v~~d~~~a~~~a~~ll~~~~G~~ 122 (265)
T cd06354 47 EPNLEQLADAGYDLIVGVGFL--LAD--ALKEVAKQYPDQKFAIIDAVVDDPPNVASIVFKEEEGSFLAGYLAALMTKTG 122 (265)
T ss_pred HHHHHHHHhCCCCEEEEcCcc--hHH--HHHHHHHHCCCCEEEEEecccCCCCcEEEEEecchhHHHHHHHHHHhhcCCC
Confidence 677888999999999998743 111 233333333 666666655322101122 234 678887543321 2456
Q ss_pred cEEEc
Q 009804 306 DCCLI 310 (525)
Q Consensus 306 d~iLI 310 (525)
++.+|
T Consensus 123 ~I~~i 127 (265)
T cd06354 123 KVGFI 127 (265)
T ss_pred eEEEE
Confidence 67776
No 107
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=65.01 E-value=41 Score=34.85 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=56.9
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
+.+|||||| -...|+.++++.+-+ .++..+++-+. -.|+ |= -...++-
T Consensus 14 p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p----------------~~vQ-----G~------~A~~~I~ 61 (319)
T PF02601_consen 14 PKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYP----------------ASVQ-----GE------GAAASIV 61 (319)
T ss_pred CCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEe----------------cccc-----cc------chHHHHH
Confidence 469999998 456677777777744 34433443211 1111 10 0012344
Q ss_pred HHHHHHHHcC----CCEEEEEcCCcchHHHHHHHHHHHHc---CCcee-EEEeeccccC
Q 009804 233 KIVDSIQDRG----INQVYIIGGDGTQKGASVIYEEVRRR---GLKVV-VAGIPKTIDN 283 (525)
Q Consensus 233 ~iv~~l~~~~----Id~L~vIGGdgS~~~A~~L~e~~~~~---g~~i~-VIgIPKTIDN 283 (525)
+.++.+.+.+ +|.++++=|-||...-..+.+|...+ ..+++ |.||=-.+|.
T Consensus 62 ~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ 120 (319)
T PF02601_consen 62 SALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF 120 (319)
T ss_pred HHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc
Confidence 5555555544 99999999999998877655553322 33344 4466666554
No 108
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=64.65 E-value=11 Score=39.64 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
++..++++.+++++.|.+|-|||--.++.|..++-. ..+++|.||-|--.+-.
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTagTgse 116 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIASTDAP 116 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCccccCcc
Confidence 457889999999999999999999999999998753 24679999999655543
No 109
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=64.07 E-value=1.3e+02 Score=28.47 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=66.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
|||++...-..|..+.+++++-..+.. +|. ++ . +.-+........++
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~-~g~-~~---------------~----------------~~~~~~~~~~~~~~ 47 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE-LGV-EL---------------I----------------VLDAQNDVSKQIQQ 47 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh-cCc-eE---------------E----------------EECCCCCHHHHHHH
Confidence 578888766788888888888777653 221 11 1 01111112234567
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc--CCCC--CCc--hhhHHHHHHhhhc--CCcc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID--NDIP--VPL--LTWFIAMYATLAS--RDVD 306 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID--NDI~--gtD--~sG~IAl~aaLAs--~~ad 306 (525)
++.|...++|++++.+.+.... ....+++++.+++ +|.+=.+.+ +.++ ..| .+|..++...+.. +.-.
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~--~~~~~~l~~~~ip--~V~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~ 123 (267)
T cd01536 48 IEDLIAQGVDGIIISPVDSAAL--TPALKKANAAGIP--VVTVDSDIDGGNRLAYVGTDNYEAGRLAGEYLAKLLGGKGK 123 (267)
T ss_pred HHHHHHcCCCEEEEeCCCchhH--HHHHHHHHHCCCc--EEEecCCCCccceeEEEecCHHHHHHHHHHHHHHHhCCCce
Confidence 7778888999999987653221 1233444555654 554432222 2232 234 7788877666554 4566
Q ss_pred EEEc
Q 009804 307 CCLI 310 (525)
Q Consensus 307 ~iLI 310 (525)
+.++
T Consensus 124 i~~i 127 (267)
T cd01536 124 VAII 127 (267)
T ss_pred EEEE
Confidence 6655
No 110
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.98 E-value=6.8 Score=40.90 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+.|.++++|||||+-.+..... +.+++++||..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV 89 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec
Confidence 6899999999999987665432 34567888865
No 111
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=63.58 E-value=9.2 Score=39.80 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHH-HHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKG-ASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~-A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
-+..++++.+...+.|.+++.|||||... ++.|++ .+.+. +--||.===||+.
T Consensus 45 g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~----~~~~~-LgilP~GT~NdfA 98 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAG----TDDPP-LGILPGGTANDFA 98 (301)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhc----CCCCc-eEEecCCchHHHH
Confidence 36778888888889999999999999885 445543 34432 5556875556653
No 112
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=63.48 E-value=13 Score=39.53 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-------------RGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-------------~g~~i~VIgIPKTI 281 (525)
+..+++++.+++.++|.++-|||--.++.|..++-.... ....+++|.||-|-
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 132 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTA 132 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 457899999999999999999999999999887632110 12246799999984
No 113
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=63.40 E-value=16 Score=38.95 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc----------------CCceeEEEeeccccCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR----------------GLKVVVAGIPKTIDND 284 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~----------------g~~i~VIgIPKTIDND 284 (525)
+..+++++.+++.++|.++-|||--+++.|..++-..... .-.+++|.||-|--..
T Consensus 68 ~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTG 139 (375)
T cd08179 68 ETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTA 139 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchh
Confidence 4578999999999999999999999999999886321100 1136789999875433
No 114
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=63.19 E-value=1.5e+02 Score=28.75 Aligned_cols=77 Identities=14% Similarity=0.046 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC----CCCCc--hhhHHHHHHhhhc-
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND----IPVPL--LTWFIAMYATLAS- 302 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND----I~gtD--~sG~IAl~aaLAs- 302 (525)
+..+.++.+...++|++++.+.+.+.. ....+.+.+.++++-+++-+ .++. .-++| .+|.+++..-+..
T Consensus 44 ~~~~~i~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~ipvV~~~~~--~~~~~~~~~V~~d~~~~g~~~~~~l~~~~ 119 (270)
T cd06308 44 KQVADIENFIRQGVDLLIISPNEAAPL--TPVVEEAYRAGIPVILLDRK--ILSDKYTAYIGADNYEIGRQAGEYIANLL 119 (270)
T ss_pred HHHHHHHHHHHhCCCEEEEecCchhhc--hHHHHHHHHCCCCEEEeCCC--CCCccceEEeecCcHHHHHHHHHHHHHHc
Confidence 345667778889999999987663321 12224445567554333322 2121 12345 7888887655552
Q ss_pred -CCccEEEc
Q 009804 303 -RDVDCCLI 310 (525)
Q Consensus 303 -~~ad~iLI 310 (525)
++-+++++
T Consensus 120 ~g~~~i~~l 128 (270)
T cd06308 120 PGKGNILEI 128 (270)
T ss_pred CCCceEEEE
Confidence 46677776
No 115
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=63.05 E-value=16 Score=37.39 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=40.8
Q ss_pred cCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHH-HHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 225 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAS-VIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 225 sR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.+...+..++++.+.+.+.+.++++|||||+..+. .|.+. ..+.++++.-||.==-||+.
T Consensus 35 t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 35 TWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 34345567777777778899999999999988755 33321 11233456778987788864
No 116
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=62.98 E-value=15 Score=39.46 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-------------RGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-------------~g~~i~VIgIPKTIDNDI~ 286 (525)
++.+++++.+++.+.|.++-|||.-+++.|..++-.... ....+++|.||-|=-.+-.
T Consensus 75 ~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE 145 (383)
T PRK09860 75 ENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASE 145 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhc
Confidence 357899999999999999999999999999988742111 0124689999988654443
No 117
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=62.85 E-value=16 Score=39.07 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc---------------CCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR---------------GLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~---------------g~~i~VIgIPKTI 281 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-....- .-.+++|.||-|-
T Consensus 73 ~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTa 140 (379)
T TIGR02638 73 TVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTA 140 (379)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCC
Confidence 4578899999999999999999999999998776432211 1236899999984
No 118
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=62.75 E-value=1.5e+02 Score=28.71 Aligned_cols=121 Identities=10% Similarity=-0.006 Sum_probs=67.9
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+|||+...=.-|....++.++-+.+.. +|. ++.- .. ..+.+......++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------~~----------------~~~~~~~~~~~~~ 49 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK-LGV-SVDI-------------QA----------------APSEGDQQGQLSI 49 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH-hCC-eEEE-------------Ec----------------cCCCCCHHHHHHH
Confidence 467777655667788888888777754 442 2210 00 0011122234577
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhhc--CCccE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLAS--RDVDC 307 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLAs--~~ad~ 307 (525)
++.|...+++++++.+.+.+.. ....++++++++ +||.+-..++ +..+ .+| .+|.+++..-... +.-.+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i 125 (275)
T cd06320 50 AENMINKGYKGLLFSPISDVNL--VPAVERAKKKGI--PVVNVNDKLIPNATAFVGTDNKANGVRGAEWIIDKLAEGGKV 125 (275)
T ss_pred HHHHHHhCCCEEEECCCChHHh--HHHHHHHHHCCC--eEEEECCCCCCccceEEecCcHHHHHHHHHHHHHHhCCCceE
Confidence 8889999999998877654321 122355555664 5666644332 2232 244 6788776655544 34466
Q ss_pred EEc
Q 009804 308 CLI 310 (525)
Q Consensus 308 iLI 310 (525)
.++
T Consensus 126 ~~l 128 (275)
T cd06320 126 AII 128 (275)
T ss_pred EEE
Confidence 655
No 119
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=61.65 E-value=1.6e+02 Score=28.65 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-----CCC--CCc--hhhHHHHHHhh
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-----DIP--VPL--LTWFIAMYATL 300 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-----DI~--gtD--~sG~IAl~aaL 300 (525)
...++++.+...++|++++.+.+.. ....+.+++.+++++ ||.+=...+. .++ ++| .+|.+|+..-+
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~~~--~~~~~i~~~~~~~iP--vV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~ 118 (273)
T cd06309 43 NQISAIRSFIAQGVDVIILAPVVET--GWDPVLKEAKAAGIP--VILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLA 118 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCccc--cchHHHHHHHHCCCC--EEEEecCcCCccCcceeeEecCChHHHHHHHHHHHH
Confidence 3457888889999999999876643 111222444555755 5544333321 122 344 78888877666
Q ss_pred hc--CCccEEEcC
Q 009804 301 AS--RDVDCCLIP 311 (525)
Q Consensus 301 As--~~ad~iLIP 311 (525)
.. +.-.++++.
T Consensus 119 ~~~~g~~~i~~i~ 131 (273)
T cd06309 119 KATGGKGNIVELQ 131 (273)
T ss_pred HHcCCCceEEEEe
Confidence 64 455677773
No 120
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=61.65 E-value=17 Score=39.33 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC-------------CceeEEEeecccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG-------------LKVVVAGIPKTID 282 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g-------------~~i~VIgIPKTID 282 (525)
+..++.++.+++.+.|.++-|||--+++.|..++-....-+ -.+++|.||-|--
T Consensus 93 ~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaG 159 (395)
T PRK15454 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAG 159 (395)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCc
Confidence 34788999999999999999999999999988765322111 1367999998753
No 121
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=61.51 E-value=18 Score=38.95 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHH
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIY 262 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~ 262 (525)
...+++++.+++.++|.++-|||--+++.|..++
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 65 ETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3578999999999999999999999999998886
No 122
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.24 E-value=8.5 Score=39.70 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.|.++++|||||+-.|.... ..+|+||-
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN 80 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGIN 80 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEE
Confidence 689999999999987655431 24788883
No 123
>PRK15138 aldehyde reductase; Provisional
Probab=61.03 E-value=15 Score=39.42 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC----------------CceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG----------------LKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g----------------~~i~VIgIPKTI 281 (525)
+..+++++.+++.++|.++-|||--+++.|..++-.....+ -.+++|.||-|-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTa 140 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLP 140 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCC
Confidence 45789999999999999999999999999998864321111 135789999874
No 124
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=60.97 E-value=17 Score=38.54 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH------------cCCceeEEEeecccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR------------RGLKVVVAGIPKTID 282 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~------------~g~~i~VIgIPKTID 282 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-.... ..-.+++|.||-|--
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtag 135 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAG 135 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCc
Confidence 457899999999999999999999999999977642210 112367999999863
No 125
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=60.58 E-value=32 Score=36.03 Aligned_cols=83 Identities=24% Similarity=0.235 Sum_probs=51.8
Q ss_pred EEEEEcCCc-chHH-HHHHHHHHHHcCCceeEEEeeccccCCCCCCc---------------------------hhhHHH
Q 009804 245 QVYIIGGDG-TQKG-ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL---------------------------LTWFIA 295 (525)
Q Consensus 245 ~L~vIGGdg-S~~~-A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD---------------------------~sG~IA 295 (525)
.++++|||| ++.- ...|.. ..+||.+|.+|. +||-+++.- +.+-||
T Consensus 90 ~Viv~gGDG~~~dIG~~~l~h-~~~Rn~dit~iv----~DNevYgnTggQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la 164 (294)
T COG1013 90 SVIVIGGDGDAYDIGGNHLIH-ALRRNHDITYIV----VDNEVYGNTGGQASPTTPKGAKTKTTPYGKRSEKKKDPGLLA 164 (294)
T ss_pred eEEEEecchhHhhhhhHHHHH-HHHcCCCeEEEE----ECCeecccCCCccCCCCCCCceeeecCCCCCcCCCCCHHHHH
Confidence 899999999 4443 333433 346788888885 588887633 666676
Q ss_pred HHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEE
Q 009804 296 MYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVI 341 (525)
Q Consensus 296 l~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVV 341 (525)
+.++ +. -|--+.+ .+ +..+.+.|++-++.+|.++|.|
T Consensus 165 ~a~G-~~-yVAr~~~----~~---~~~l~~~i~kA~~~~Gps~I~v 201 (294)
T COG1013 165 MAAG-AT-YVARASV----GD---PKDLTEKIKKAAEHKGPSFIDV 201 (294)
T ss_pred HHCC-CC-eEEEecc----cC---HHHHHHHHHHHHhccCCeEEEE
Confidence 6554 11 1111111 11 3467788888888889888754
No 126
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=60.56 E-value=1.6e+02 Score=28.33 Aligned_cols=119 Identities=8% Similarity=0.028 Sum_probs=64.5
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+||++...-.-|=...++.++-..+.. +|. ++.- .-+........+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~~~ 47 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEA-LGG-DLRV-------------------------------YDAGGDDAKQADQ 47 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHH-cCC-EEEE-------------------------------ECCCCCHHHHHHH
Confidence 467777655667677788888777754 442 2211 0011111234467
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhh--cCCccE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLA--SRDVDC 307 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLA--s~~ad~ 307 (525)
++.+...++|++++..++.... ..+.+++.++|++ ||.+=...+ ..+. ++| .+|.+|+..-+. .+.-.+
T Consensus 48 l~~~~~~~vdgii~~~~~~~~~--~~~i~~~~~~~ip--vV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i 123 (273)
T cd06305 48 IDQAIAQKVDAIIIQHGRAEVL--KPWVKRALDAGIP--VVAFDVDSDNPKVNNTTQDDYSLARLSLDQLVKDLGGKGNV 123 (273)
T ss_pred HHHHHHcCCCEEEEecCChhhh--HHHHHHHHHcCCC--EEEecCCCCCCccceeeechHHHHHHHHHHHHHHhCCCCCE
Confidence 7777788999999998764321 2223445566755 554421111 1121 233 777777665555 334555
Q ss_pred EEc
Q 009804 308 CLI 310 (525)
Q Consensus 308 iLI 310 (525)
.++
T Consensus 124 ~~i 126 (273)
T cd06305 124 GYV 126 (273)
T ss_pred EEE
Confidence 555
No 127
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=60.26 E-value=22 Score=34.02 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred cccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhh
Q 009804 221 VLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATL 300 (525)
Q Consensus 221 iLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaL 300 (525)
+.+--|..+.+.+++++.++++++.+|.+.|--.+-. -.++- ....+|||||-... .+. |+=|+.+.+
T Consensus 32 V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~~-~l~-----G~daLlS~v 99 (156)
T TIGR01162 32 VVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPSK-ALS-----GLDSLLSIV 99 (156)
T ss_pred EECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCcc-CCC-----CHHHHHHHh
Confidence 4445577778899999999999977766655422221 22322 34578999997543 244 344444444
Q ss_pred h
Q 009804 301 A 301 (525)
Q Consensus 301 A 301 (525)
.
T Consensus 100 q 100 (156)
T TIGR01162 100 Q 100 (156)
T ss_pred c
Confidence 4
No 128
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=60.12 E-value=19 Score=38.32 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-------------RGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-------------~g~~i~VIgIPKTI 281 (525)
+...++++.+++.++|.++-|||--.++.|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 457899999999999999999999999999888754311 01246799999985
No 129
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=59.76 E-value=1.7e+02 Score=28.14 Aligned_cols=80 Identities=9% Similarity=0.163 Sum_probs=50.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+||++...-..|-.+.++.++.+.+.+ +|. +++-+ -+.........+
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~-------------------------------~~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AGY-STIIG-------------------------------NSDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cCC-EEEEE-------------------------------eCCCCHHHHHHH
Confidence 367777655678888888888887754 552 33211 011111234577
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLK 271 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~ 271 (525)
++.+..+++|++++.+.+.... ..+++++++++
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~ip 80 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE----QLEDLLKRGIP 80 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH----HHHHHHhCCCC
Confidence 8889999999999998765432 23555666754
No 130
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=59.58 E-value=49 Score=33.31 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=35.7
Q ss_pred hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCCC
Q 009804 290 LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAG 346 (525)
Q Consensus 290 ~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa~ 346 (525)
++||=+++=+++. +.-.++||...++ | + ....+++++.|.++++-.|...
T Consensus 257 ~~G~~t~~Ea~~~-g~P~l~ip~~~~~-E--Q---~~~a~~l~~~G~~~~~~~~~~~ 306 (318)
T PF13528_consen 257 KGGYTTISEALAL-GKPALVIPRPGQD-E--Q---EYNARKLEELGLGIVLSQEDLT 306 (318)
T ss_pred CCCHHHHHHHHHc-CCCEEEEeCCCCc-h--H---HHHHHHHHHCCCeEEcccccCC
Confidence 9999988888888 6778999987644 2 1 3345567777888877555553
No 131
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=59.37 E-value=90 Score=29.65 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=25.9
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYR 196 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~ 196 (525)
.++.++ ||.-. ++..+...+.+.|+..+|.|..+||-
T Consensus 49 ~~ifll--G~~~~----~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 49 KRIFLL--GGSEE----VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CeEEEE--eCCHH----HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 344443 55544 66666667777898899999999976
No 132
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.30 E-value=70 Score=31.01 Aligned_cols=76 Identities=11% Similarity=0.181 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
...+.+.+...++|++++.+.+..- ..+.+.++++ +||.+=..++ ..+. .+| .+|.+|+..-+..+.-
T Consensus 47 ~~~~~~~l~~~~vdgiii~~~~~~~-----~~~~l~~~~i--pvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~ 119 (268)
T cd06277 47 EFELPSFLEDGKVDGIILLGGISTE-----YIKEIKELGI--PFVLVDHYIPNEKADCVLTDNYSGAYAATEYLIEKGHR 119 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCChH-----HHHHHhhcCC--CEEEEccCCCCCCCCEEEecchHHHHHHHHHHHHCCCC
Confidence 3466777888999999999865431 1344555565 4554422121 1121 223 7888887766666566
Q ss_pred cEEEcCCC
Q 009804 306 DCCLIPES 313 (525)
Q Consensus 306 d~iLIPE~ 313 (525)
.++++-..
T Consensus 120 ~i~~i~~~ 127 (268)
T cd06277 120 KIGFVGDP 127 (268)
T ss_pred cEEEECCC
Confidence 77777443
No 133
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=59.21 E-value=2e+02 Score=28.91 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=66.4
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
.+|||+...-..|=.+.++.++-..+.. +|. +++- .-+........+
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~-~g~-~~~i-------------------------------~~~~~~~~~~~~ 106 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATM-YKY-NIIL-------------------------------SNSDEDPEKEVQ 106 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHH-cCC-EEEE-------------------------------EeCCCCHHHHHH
Confidence 5788888654567777778887776653 341 2210 001111122346
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCC--CCCc--hhhHHHHHHhhhcCCccEE
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDI--PVPL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI--~gtD--~sG~IAl~aaLAs~~ad~i 308 (525)
+++.|..+++|++++.+-+.+.. +.+.+.+.+++ ||.+=...+ .++ -.+| .+|+.|+.--+..|+-.+.
T Consensus 107 ~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~iP--vV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~ 180 (329)
T TIGR01481 107 VLNTLLSKQVDGIIFMGGTITEK----LREEFSRSPVP--VVLAGTVDKENELPSVNIDYKQATKEAVGELIAKGHKSIA 180 (329)
T ss_pred HHHHHHhCCCCEEEEeCCCCChH----HHHHHHhcCCC--EEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCCeEE
Confidence 67788889999999987543321 22344455655 554322111 112 2244 7788887766666566777
Q ss_pred Ec
Q 009804 309 LI 310 (525)
Q Consensus 309 LI 310 (525)
++
T Consensus 181 ~i 182 (329)
T TIGR01481 181 FV 182 (329)
T ss_pred EE
Confidence 76
No 134
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=59.05 E-value=20 Score=38.18 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEEEeeccccCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-------------RGLKVVVAGIPKTIDNDI 285 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-------------~g~~i~VIgIPKTIDNDI 285 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-.... ....+++|.||-|--.+-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgS 141 (377)
T cd08176 72 TNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTAS 141 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchh
Confidence 457899999999999999999999999999988642111 113468999998864443
No 135
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=59.04 E-value=16 Score=38.86 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-----------c-------CCceeEEEeeccccC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-----------R-------GLKVVVAGIPKTIDN 283 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-----------~-------g~~i~VIgIPKTIDN 283 (525)
+..+++++.+++.++|.++-|||--.++.|..++-.... . .-.+++|.||-|--.
T Consensus 70 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagT 142 (380)
T cd08185 70 TTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGT 142 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChh
Confidence 457889999999999999999999999999888653210 0 124679999988543
No 136
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=59.03 E-value=2.1e+02 Score=28.98 Aligned_cols=118 Identities=10% Similarity=-0.041 Sum_probs=66.7
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
..||++...-.-|-...++.++-..+.. +|. ++.-.. +........+
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~~-------------------------------~~~~~~~~~~ 110 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA-HGY-QTMLAH-------------------------------YGYKPEMEQE 110 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH-CCC-EEEEec-------------------------------CCCCHHHHHH
Confidence 4788887655567778888888887754 452 322100 0011112345
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec-cccC-C-CCCCc--hhhHHHHHHhhhcCCccEE
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK-TIDN-D-IPVPL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK-TIDN-D-I~gtD--~sG~IAl~aaLAs~~ad~i 308 (525)
.++.+..+++|++++.+-+.+- ...+++.+.+++ +|.+-. ..+. + .-.+| .+|++|+.-=+..|+-++.
T Consensus 111 ~~~~~~~~~vdgiI~~~~~~~~----~~~~~l~~~~iP--vV~~~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~Gh~~I~ 184 (331)
T PRK14987 111 RLESMLSWNIDGLILTERTHTP----RTLKMIEVAGIP--VVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARGHRHIA 184 (331)
T ss_pred HHHHHHhcCCCEEEEcCCCCCH----HHHHHHHhCCCC--EEEEecCCCCCCCceEEeCcHHHHHHHHHHHHHCCCceEE
Confidence 6777888999999998644332 122344455654 554311 1111 1 12345 7899988766666556677
Q ss_pred Ec
Q 009804 309 LI 310 (525)
Q Consensus 309 LI 310 (525)
++
T Consensus 185 ~i 186 (331)
T PRK14987 185 YL 186 (331)
T ss_pred EE
Confidence 66
No 137
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=58.80 E-value=9.2 Score=39.42 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=25.9
Q ss_pred cCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 241 RGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 241 ~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
...+.++++|||||+-.|..... ...++|+||
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgi 85 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGI 85 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEE
Confidence 67899999999999998887654 234788988
No 138
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=58.26 E-value=88 Score=30.11 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ 304 (525)
...++.+.+..+++|++++...+.... .+.+.+.+.++ +||.+=..++. .++ ++| .+|.+|+...+..+.
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~i--pvv~i~~~~~~~~~~~V~~d~~~~g~~a~~~l~~~g~ 118 (270)
T cd01545 44 LAERVRALLQRSRVDGVILTPPLSDNP---ELLDLLDEAGV--PYVRIAPGTPDPDSPCVRIDDRAAAREMTRHLIDLGH 118 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcc---HHHHHHHhcCC--CEEEEecCCCCCCCCeEEeccHHHHHHHHHHHHHCCC
Confidence 356777888899999999998874322 22244445565 45555333322 222 345 889999887777766
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-+++++-
T Consensus 119 ~~i~~i~ 125 (270)
T cd01545 119 RRIAFIA 125 (270)
T ss_pred ceEEEEe
Confidence 6777774
No 139
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=57.53 E-value=21 Score=37.77 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-----------------cCCceeEEEeeccccCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-----------------RGLKVVVAGIPKTIDND 284 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-----------------~g~~i~VIgIPKTIDND 284 (525)
+..+++++.+++.++|.+|-|||--.++.|..++-.... ..-.+++|.||-|--.+
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtg 136 (367)
T cd08182 64 EDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTG 136 (367)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCch
Confidence 357889999999999999999999999999888754211 01246899999996433
No 140
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=57.42 E-value=21 Score=37.51 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+++++. |.++.|||--.++.|..++-.. .++ +++|.||-|.
T Consensus 65 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 65 ETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 357889999999988 8999999999999998887432 345 5799999997
No 141
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=57.07 E-value=21 Score=37.90 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHc---CCCEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDR---GINQVYIIGGDGTQKGASVIYEEVRRR-------------GLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~---~Id~L~vIGGdgS~~~A~~L~e~~~~~-------------g~~i~VIgIPKTIDNDI~ 286 (525)
++.+++++.+++. ++|.++-|||--+++.|..++-..... +-.+++|.||-|--.+-.
T Consensus 65 ~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE 138 (347)
T cd08184 65 DQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAE 138 (347)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccc
Confidence 3478888889988 999999999999999999887543211 112568999988655443
No 142
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=57.04 E-value=2e+02 Score=29.05 Aligned_cols=122 Identities=9% Similarity=0.031 Sum_probs=66.9
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
.+||++...-.-|-.+.++.++...+.. +|. .++- .-+........+
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~-~gy-~~~i-------------------------------~~~~~~~~~~~~ 107 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCRE-AGY-QLLI-------------------------------ACSDDNPDQEKV 107 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCCCCHHHHHH
Confidence 4788887655567777788888777754 442 2221 001111123456
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec-cccCCCCCCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK-TIDNDIPVPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK-TIDNDI~gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+++.|..+++|++++.+.+.... ...+.+.+.++++-+++-+- ..+-+...+| .+|+.|+.--+..++-.++++
T Consensus 108 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G~~~I~~i 184 (327)
T TIGR02417 108 VIENLLARQVDALIVASCMPPED---AYYQKLQNEGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQHADEFWYL 184 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCh---HHHHHHHhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 77888899999999987654221 12234444565543333221 1111222334 677777665555555567666
Q ss_pred C
Q 009804 311 P 311 (525)
Q Consensus 311 P 311 (525)
-
T Consensus 185 ~ 185 (327)
T TIGR02417 185 G 185 (327)
T ss_pred e
Confidence 4
No 143
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.92 E-value=1.9e+02 Score=27.94 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=47.1
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+|||+...-.-|=.+.++.++...+.. +|. ++. ++-+.........+
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~ 47 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKA-LGY-DAV-------------------------------ELSAENSAKKELEN 47 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHh-cCC-eEE-------------------------------EecCCCCHHHHHHH
Confidence 367776655677788888888887764 442 221 01011111223456
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCcee
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVV 273 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~ 273 (525)
++.+...++|++++.+.+... ...+.+.+++.++++-
T Consensus 48 i~~~~~~~~dgiii~~~~~~~--~~~~l~~~~~~~ipvV 84 (277)
T cd06319 48 LRTAIDKGVSGIIISPTNSSA--AVTLLKLAAQAKIPVV 84 (277)
T ss_pred HHHHHhcCCCEEEEcCCchhh--hHHHHHHHHHCCCCEE
Confidence 677777899999876654321 1122344555675543
No 144
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=56.73 E-value=21 Score=38.23 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH---------------cCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR---------------RGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~---------------~g~~i~VIgIPKTI 281 (525)
+...++++.+++.++|.++-|||--.++.|..++-.... ..-.+++|.||-|-
T Consensus 74 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 357888999999999999999999999999876532211 01136899999994
No 145
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=56.54 E-value=1.6e+02 Score=28.62 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=66.6
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~~i 234 (525)
|||+...=..|=...++.++...+.. +|. ++. +..+... ....+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~~~ 47 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSE-KGY-SLL--------------------------------LASTNNDPERERKC 47 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHHHHHH
Confidence 56666555677777777787777654 442 221 1111212 224567
Q ss_pred HHHHHHcCCCEEEEEcCCcchH--HHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCccE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQK--GASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~--~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
++.+..+++|++++.+.+.... ....+ +++.+.++ +||.+=...+. .+. .+| .+|.+++.--+..|.-++
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~~~~~~~~-~~~~~~~i--pvV~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~G~~~i 124 (273)
T cd01541 48 LENMLSQGIDGLIIEPTKSALPNPNIDLY-LKLEKLGI--PYVFINASYEELNFPSLVLDDEKGGYKATEYLIELGHRKI 124 (273)
T ss_pred HHHHHHcCCCEEEEeccccccccccHHHH-HHHHHCCC--CEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHcCCcCE
Confidence 8889999999999988764321 12222 34455565 45554332222 111 233 788888766566555566
Q ss_pred EEc
Q 009804 308 CLI 310 (525)
Q Consensus 308 iLI 310 (525)
+++
T Consensus 125 ~~l 127 (273)
T cd01541 125 AGI 127 (273)
T ss_pred EEe
Confidence 655
No 146
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.87 E-value=2e+02 Score=27.91 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC-----CCCCc--hhhHHHHHHhhhc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND-----IPVPL--LTWFIAMYATLAS 302 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND-----I~gtD--~sG~IAl~aaLAs 302 (525)
....+++.+..+++|++++.+.|.+. .....+.++++|+ +||.+-..+++. .-++| .+|.+|+.--+..
T Consensus 48 ~~~~~~~~l~~~~vDgiii~~~~~~~--~~~~i~~~~~~gI--pvV~~d~~~~~~~~~~~~V~~d~~~~g~~aa~~l~~~ 123 (274)
T cd06311 48 QQNAQQDLLINRKIDALVILPFESAP--LTQPVAKAKKAGI--FVVVVDRGLSSPGAQDLYVAGDNYGMGRVAGEYIATK 123 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchh--hHHHHHHHHHCCC--eEEEEcCCCCCCcccceEEcCCcHHHHHHHHHHHHHH
Confidence 45678888999999999999876432 1122244455675 466553333322 12345 7788886655543
Q ss_pred --CCccEEEc
Q 009804 303 --RDVDCCLI 310 (525)
Q Consensus 303 --~~ad~iLI 310 (525)
+.-.++++
T Consensus 124 ~~g~~~i~~~ 133 (274)
T cd06311 124 LGGNGNIVVL 133 (274)
T ss_pred hCCCCeEEEE
Confidence 45566666
No 147
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.50 E-value=2e+02 Score=27.71 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC------CCc--hhhHHHHHHhhh
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP------VPL--LTWFIAMYATLA 301 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~------gtD--~sG~IAl~aaLA 301 (525)
..+.++.+...++|++++.+.+.... ....+++++++++ ||.+=.+++ .+.+ ++| .+|..++...+.
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~--~~~l~~~~~~~iP--vV~~~~~~~~~~~~~v~~~v~~d~~~~g~~~~~~l~~ 120 (275)
T cd06317 45 QAAQVEDLIAQKVDGIILWPTDGQAY--IPGLRKAKQAGIP--VVITNSNISEKGFEFIKSFTGPDDISQGERSAEAMCK 120 (275)
T ss_pred HHHHHHHHHHcCCCEEEEecCCcccc--HHHHHHHHHCCCc--EEEeCCCCCCCccchhhhhccccHHHHHHHHHHHHHH
Confidence 45667778888999999988764321 1122444556755 443322221 1111 455 578877665544
Q ss_pred c--CCccEEEc
Q 009804 302 S--RDVDCCLI 310 (525)
Q Consensus 302 s--~~ad~iLI 310 (525)
. +.-.++++
T Consensus 121 ~~~g~~~i~~l 131 (275)
T cd06317 121 ALGGKGQIVVI 131 (275)
T ss_pred HcCCCceEEEE
Confidence 2 33456666
No 148
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=55.05 E-value=1.5e+02 Score=30.47 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=56.9
Q ss_pred ccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC
Q 009804 149 FESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG 228 (525)
Q Consensus 149 f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~ 228 (525)
+.-+..+||++...-.-|..+.++.++.+.+.. ++...++ +.++...
T Consensus 20 ~~~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~ 66 (330)
T PRK15395 20 AAAADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQND 66 (330)
T ss_pred hhcCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCC
Confidence 344567888888655678888888888887764 3311111 1122222
Q ss_pred Cc-HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 229 HD-TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 229 ~d-~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
.+ ..+.++.|..+++|++++.+.+..... ..+ +++++.++++-+++-
T Consensus 67 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~giPvV~vd~ 114 (330)
T PRK15395 67 QSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQDVPVVFFNK 114 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCCCcEEEEcC
Confidence 22 345778899999999999987754332 223 445566766444443
No 149
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.98 E-value=20 Score=37.73 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDI 285 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI 285 (525)
+..+++++..++.+.|.++-|||--.++.|..++-.. + +++|.||-|--.+-
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~---~--~p~i~VPTt~gtgs 116 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL---G--KPVFTFPTIASNCA 116 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc---C--CCEEEecCccccCc
Confidence 3477888899999999999999999999999887542 4 67999999854433
No 150
>PRK13057 putative lipid kinase; Reviewed
Probab=54.64 E-value=18 Score=36.92 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.+..++++. ...+.|.++++|||||+..+.. .+...+ +++..||.==-||+.
T Consensus 38 ~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~~~~--~~lgiiP~GT~Ndfa 89 (287)
T PRK13057 38 DDLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALVETG--LPLGILPLGTANDLA 89 (287)
T ss_pred HHHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHhcCC--CcEEEECCCCccHHH
Confidence 345555555 3567899999999999987642 222233 567778976677764
No 151
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=54.63 E-value=24 Score=37.48 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND 284 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND 284 (525)
..+++++.+++++.|.++-|||--.++.|..++-. ++ +++|.||-|--.|
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTtagtg 121 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY---LG--VPVVIVPTIASTD 121 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH---cC--CCEEEeCCccccC
Confidence 57789999999999999999999999999988742 24 6799999984333
No 152
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=54.46 E-value=97 Score=30.12 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
.+++.+.+...++|++++.+.+.... ..+++.+.|+ +||.+-...+. .++ .+| .+|..|+.--+..+.-
T Consensus 53 ~~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~i--pvV~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~g~~ 126 (275)
T cd06295 53 RDWLARYLASGRADGVILIGQHDQDP----LPERLAETGL--PFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLLARGRR 126 (275)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCCC--CEEEECCccCCCCCCEEEECcHHHHHHHHHHHHHCCCC
Confidence 35666778889999999998765421 2345555565 56655433332 112 233 7788887655555556
Q ss_pred cEEEcCC
Q 009804 306 DCCLIPE 312 (525)
Q Consensus 306 d~iLIPE 312 (525)
+++++-.
T Consensus 127 ~i~~i~~ 133 (275)
T cd06295 127 RIAFLGG 133 (275)
T ss_pred eEEEEcC
Confidence 6777653
No 153
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=53.95 E-value=2.1e+02 Score=27.40 Aligned_cols=118 Identities=10% Similarity=0.071 Sum_probs=69.2
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
||++...-.-|-.+.++.++.+.+.. +|. .+.-+ -+..........+
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~~~~~ 48 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRA-HGY-QVLVC-------------------------------NSDNDPEKEKEYL 48 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHH-cCC-EEEEE-------------------------------cCCCCHHHHHHHH
Confidence 56666555677888888888887764 442 22110 0111112245677
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+.+...++|++++.+.+.... .+ +.+++.++ +||.+=..++. .++ ++| .+|.+++..-+..+.-+++++
T Consensus 49 ~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~i--pvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l 122 (267)
T cd06283 49 ESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNGK--PVVLVDRKIPELGVDTVTLDNYEAAKEAVDHLIEKGYERILFV 122 (267)
T ss_pred HHHHHcCcCEEEEeCCCCChH---HH-HHHhcCCC--CEEEEcCCCCCCCCCEEEeccHHHHHHHHHHHHHcCCCcEEEE
Confidence 788889999999998765432 23 44445564 45554222221 122 233 889888877666666677777
Q ss_pred CC
Q 009804 311 PE 312 (525)
Q Consensus 311 PE 312 (525)
-+
T Consensus 123 ~~ 124 (267)
T cd06283 123 TE 124 (267)
T ss_pred ec
Confidence 43
No 154
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=53.13 E-value=25 Score=37.52 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEEEeeccccCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-------------RGLKVVVAGIPKTIDNDI 285 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-------------~g~~i~VIgIPKTIDNDI 285 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-.... ....+++|.||-|--.+-
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGs 142 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGS 142 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhh
Confidence 457889999999999999999999999999887543211 012468999999865443
No 155
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=52.87 E-value=35 Score=34.72 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=25.8
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYR 196 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~ 196 (525)
.++.++ ||... ++..++..+...| ..+|.|.++||-
T Consensus 106 ~~v~ll--G~~~~----v~~~a~~~l~~~y-~l~i~g~~~Gyf 141 (243)
T PRK03692 106 TPVFLV--GGKPE----VLAQTEAKLRTQW-NVNIVGSQDGYF 141 (243)
T ss_pred CeEEEE--CCCHH----HHHHHHHHHHHHh-CCEEEEEeCCCC
Confidence 455555 66555 6777777776778 478999999885
No 156
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=52.70 E-value=23 Score=37.46 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+++.++ |.++.|||--.++.|..++-.. .++ +++|.||-|.
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~g--ip~i~IPTT~ 128 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MRG--IRFIQVPTTL 128 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cCC--CCEEEcCchh
Confidence 457889999999987 9999999999999998887432 345 5799999996
No 157
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=52.59 E-value=75 Score=34.34 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=45.6
Q ss_pred ccccCC-CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 222 LGTSRG-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 222 LGSsR~-~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
.|..+. ..+++.++..+++++|..++=-||-.....|.++.+.++++|++++|..|-.
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~g 108 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYG 108 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEEC
Confidence 444443 2478899999999999988777777777778888888888999888887754
No 158
>PRK13059 putative lipid kinase; Reviewed
Probab=52.46 E-value=22 Score=36.60 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=32.0
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
..+.+.+.++++|||||...+. +.+.+.+.++++.-||.==-||+.
T Consensus 52 ~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA 97 (295)
T PRK13059 52 DIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA 97 (295)
T ss_pred HhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH
Confidence 3356889999999999988754 223333445667778986677754
No 159
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=52.46 E-value=56 Score=35.86 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
-+.+||||||- ...++.++++.+- ++++..+|+ +-+-.| +|-. ...++
T Consensus 128 ~p~~i~vits~-~~aa~~D~~~~~~----~r~p~~~~~----------------~~~~~v-----QG~~------a~~~i 175 (432)
T TIGR00237 128 FPKRVGVITSQ-TGAALADILHILK----RRDPSLKVV----------------IYPTLV-----QGEG------AVQSI 175 (432)
T ss_pred CCCEEEEEeCC-ccHHHHHHHHHHH----hhCCCceEE----------------Eecccc-----cCcc------HHHHH
Confidence 35699999973 4566666666664 345433443 111112 2210 01223
Q ss_pred HHHHHHHHHc-CCCEEEEEcCCcchHHHHHHHHHHHHc---CCceeEE-EeeccccC
Q 009804 232 SKIVDSIQDR-GINQVYIIGGDGTQKGASVIYEEVRRR---GLKVVVA-GIPKTIDN 283 (525)
Q Consensus 232 ~~iv~~l~~~-~Id~L~vIGGdgS~~~A~~L~e~~~~~---g~~i~VI-gIPKTIDN 283 (525)
-+.++.+... .+|.++++=|-||...-..+.+|...+ ..+++|| ||=--+|.
T Consensus 176 ~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ 232 (432)
T TIGR00237 176 VESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDF 232 (432)
T ss_pred HHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCc
Confidence 3444444443 389999999999999887766654333 4555555 55555544
No 160
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.43 E-value=2.2e+02 Score=27.30 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCCC--Cc--hhhHHHHHHhhhcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIPV--PL--LTWFIAMYATLASRD 304 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~g--tD--~sG~IAl~aaLAs~~ 304 (525)
....+++.+...++|++++.+-+.... .. ....++++ +|.+=...+ ++++. +| .+|.+|+.--+..+.
T Consensus 44 ~~~~~~~~l~~~~~dgiii~~~~~~~~-~~----~~~~~~ip--vv~~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~ 116 (269)
T cd06288 44 LEAEAVEALLDHRVDGIIYATMYHREV-TL----PPELLSVP--TVLLNCYDADGALPSVVPDEEQGGYDATRHLLAAGH 116 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCChh-HH----HHHhcCCC--EEEEecccCCCCCCeEEEccHHHHHHHHHHHHHcCC
Confidence 345778889999999999998654321 11 12234544 444422222 33433 33 778888765554445
Q ss_pred ccEEEc
Q 009804 305 VDCCLI 310 (525)
Q Consensus 305 ad~iLI 310 (525)
-.++++
T Consensus 117 ~~i~~l 122 (269)
T cd06288 117 RRIAFI 122 (269)
T ss_pred ceEEEE
Confidence 567776
No 161
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=52.42 E-value=25 Score=36.97 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+++.++ |.++.|||--.++.|..++-.. .+| +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 458899999999999 9999999999999998887533 346 5799999997
No 162
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=52.26 E-value=29 Score=37.60 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEEEeeccc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-------------RGLKVVVAGIPKTI 281 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-------------~g~~i~VIgIPKTI 281 (525)
..++.++.+++.+.|.+|-+||--+++.|..++-.... ..-+.++|.||-|-
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCC
Confidence 47888999999999999999999999999887654432 11226789999884
No 163
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=52.04 E-value=2.3e+02 Score=27.30 Aligned_cols=118 Identities=9% Similarity=0.069 Sum_probs=67.8
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
|||+...-..|=.+.++.++-..+.. +|. ++. ++-+........+.+
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~i 48 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYR-QGY-NLI-------------------------------LCNTEGDPERQRSYL 48 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHH-cCC-EEE-------------------------------EEeCCCChHHHHHHH
Confidence 67777655566677777777666653 342 221 111222233456788
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCC--CCCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDI--PVPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI--~gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+.|..+++|++++.+.+........+. ...+ ++||.+-...+ ..+ -++| .+|.+|+.--+..|.-++.++
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~~~~~l~---~~~~--ipvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~G~~~i~~i 123 (269)
T cd06275 49 RMLAQKRVDGLLVMCSEYDQPLLAMLE---RYRH--IPMVVMDWGPEDDFADKIQDNSEEGGYLATRHLIELGHRRIGCI 123 (269)
T ss_pred HHHHHcCCCEEEEecCCCChHHHHHHH---hcCC--CCEEEEecccCCCCCCeEeeCcHHHHHHHHHHHHHCCCceEEEE
Confidence 889999999999999875533222221 1235 45665443332 122 2344 678888776666655677766
Q ss_pred C
Q 009804 311 P 311 (525)
Q Consensus 311 P 311 (525)
-
T Consensus 124 ~ 124 (269)
T cd06275 124 T 124 (269)
T ss_pred e
Confidence 3
No 164
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=51.97 E-value=29 Score=37.00 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHH----------Hc-------CCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVR----------RR-------GLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~----------~~-------g~~i~VIgIPKTI 281 (525)
+...++++.+++.+.|.++-|||--.++.|..++-... .. +-.+++|.||-|=
T Consensus 62 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 131 (374)
T cd08183 62 ELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTA 131 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCC
Confidence 35788999999999999999999999999988764321 00 1236799999883
No 165
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.87 E-value=2.2e+02 Score=27.53 Aligned_cols=116 Identities=6% Similarity=0.013 Sum_probs=67.2
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~~i 234 (525)
|||+...=.-|=.+.++.++...+.+ +|. ++. +-++... ....+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~gy-~v~--------------------------------~~~~~~~~~~~~~~ 47 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADA-RGL-SLV--------------------------------LCATRNRPERELTY 47 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCHHHHHHH
Confidence 66666433456667788888777764 442 332 1111211 235678
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCccEEE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad~iL 309 (525)
++.+...++|++++.+-+-.... +.+ ..+.++ +||.+=.++++ +++ .+| .+|..|+.--+..|.-++++
T Consensus 48 i~~~~~~~~dgiii~~~~~~~~~---~~~-~~~~~~--pvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~ 121 (269)
T cd06293 48 LRWLDTNHVDGLIFVTNRPDDGA---LAK-LINSYG--NIVLVDEDVPGAKVPKVFCDNEQGGRLATRHLARAGHRRIAF 121 (269)
T ss_pred HHHHHHCCCCEEEEeCCCCCHHH---HHH-HHhcCC--CEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCceEEE
Confidence 88999999999999874322222 222 223454 45555444432 222 233 88888877666666777777
Q ss_pred cC
Q 009804 310 IP 311 (525)
Q Consensus 310 IP 311 (525)
|-
T Consensus 122 i~ 123 (269)
T cd06293 122 VG 123 (269)
T ss_pred Ee
Confidence 73
No 166
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=51.69 E-value=28 Score=36.62 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+...++++.+++.+.|.+|-|||--.++.|..++.. ++ +++|.||-|--.+-.
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~---~~--~p~i~VPTtagtgse 116 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR---LD--KPIVIVPTIASTCAA 116 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH---cC--CCEEEeCCccccCcc
Confidence 357889999999999999999999999999988743 24 579999999655543
No 167
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=51.67 E-value=13 Score=33.19 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHcC-CCEEEEEcCCcchHHHHHHHHHHHHcCC--ceeEEEeeccccCCCC
Q 009804 230 DTSKIVDSIQDRG-INQVYIIGGDGTQKGASVIYEEVRRRGL--KVVVAGIPKTIDNDIP 286 (525)
Q Consensus 230 d~~~iv~~l~~~~-Id~L~vIGGdgS~~~A~~L~e~~~~~g~--~i~VIgIPKTIDNDI~ 286 (525)
..+.+....+... .+.++++|||||+..+. +.+.+... ++++.-||.==-||+.
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a 97 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA 97 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH
Confidence 3444444333333 38999999999998754 33333333 4577888976666653
No 168
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=51.56 E-value=27 Score=37.25 Aligned_cols=50 Identities=34% Similarity=0.440 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHcCC----CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI----NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I----d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+.+.++ |.++.|||--.++.|..++-.. ++| +++|.||-|.
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~ 124 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL 124 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc
Confidence 457889999999999 9999999999999998887543 346 5799999996
No 169
>PRK12361 hypothetical protein; Provisional
Probab=51.26 E-value=26 Score=39.35 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.+..++++...+.+.|.++++|||||...+.. .+...+ +++--||.==-||+.
T Consensus 284 ~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~~~~--~~lgiiP~GTgNdfA 336 (547)
T PRK12361 284 ISAEALAKQARKAGADIVIACGGDGTVTEVAS---ELVNTD--ITLGIIPLGTANALS 336 (547)
T ss_pred ccHHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHhcCC--CCEEEecCCchhHHH
Confidence 45667777777788999999999999987653 222233 456667876666654
No 170
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=51.09 E-value=34 Score=36.32 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-----------------CCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-----------------GLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-----------------g~~i~VIgIPKTIDNDI~ 286 (525)
+...++++.+++.+.|.++-|||--.++.|..++-..... .-.+++|.||-|--.+-.
T Consensus 68 ~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse 142 (370)
T cd08192 68 AAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSE 142 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhh
Confidence 3578899999999999999999999999998876543210 113689999998765443
No 171
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=50.94 E-value=32 Score=36.81 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEEEeecccc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-------------GLKVVVAGIPKTID 282 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-------------g~~i~VIgIPKTID 282 (525)
+..+.++.+++.+.|.++-|||--.++.|..++-....- +-.+++|.||-|--
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtag 132 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAG 132 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCc
Confidence 466778888999999999999999999999887543210 11468999999853
No 172
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=50.16 E-value=96 Score=33.79 Aligned_cols=99 Identities=13% Similarity=0.209 Sum_probs=54.0
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
+.|||||||- ...|+.++++.+- ++++..+++- -+-.|+ |= ....++-
T Consensus 135 p~~I~viTs~-~gAa~~D~~~~~~----~r~p~~~~~~----------------~~~~vQ-----G~------~A~~~i~ 182 (438)
T PRK00286 135 PKRIGVITSP-TGAAIRDILTVLR----RRFPLVEVII----------------YPTLVQ-----GE------GAAASIV 182 (438)
T ss_pred CCEEEEEeCC-ccHHHHHHHHHHH----hcCCCCeEEE----------------ecCcCc-----Cc------cHHHHHH
Confidence 5799999983 4556777766664 3344333332 111122 11 0012233
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc---CCceeE-EEeeccccC
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR---GLKVVV-AGIPKTIDN 283 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~---g~~i~V-IgIPKTIDN 283 (525)
+.++.+.+.++|.++++=|-||...-..+.+|..-+ ..+++| .||=--+|.
T Consensus 183 ~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~ 237 (438)
T PRK00286 183 AAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDF 237 (438)
T ss_pred HHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCc
Confidence 334444444479999999999998876554443222 344444 456665544
No 173
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=49.89 E-value=35 Score=36.42 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-------cCC------ceeEEEeeccccC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-------RGL------KVVVAGIPKTIDN 283 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-------~g~------~i~VIgIPKTIDN 283 (525)
+...++++.+++.+.|.++-|||--.++.|..++-.... .+. .+++|.||-|--.
T Consensus 72 ~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gT 139 (377)
T cd08188 72 EEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGS 139 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCcc
Confidence 346778889999999999999999999999776542211 111 3679999999743
No 174
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=49.24 E-value=49 Score=35.44 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCC---eEeCChhhhhcccccCcccccccCC
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN---TIALTPKGVNDIHKRGGTVLGTSRG 227 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~---~i~Lt~~~v~~i~~~GGtiLGSsR~ 227 (525)
....||.|+=||| |.|++|..+.+.-. .+ -+.+.+.-..++|-... -+.+-.....+...-+--.+|-.-.
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~~--~g-ve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEGV--EG-VEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhhh--Cc-eEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHH
Confidence 3557999999988 55677777765443 23 48888888888886443 1212111111111100011111111
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCc--chHH-HHHHHHHHHHcCC-ceeEEEeecc
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDG--TQKG-ASVIYEEVRRRGL-KVVVAGIPKT 280 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdg--S~~~-A~~L~e~~~~~g~-~i~VIgIPKT 280 (525)
.++.++|.+.|+. .|++|++=|.| |=++ |-.|++.++++|. -++|+..|-+
T Consensus 83 ee~~~~I~~~l~g--~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~ 137 (338)
T COG0206 83 EESIEEIEEALKG--ADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFS 137 (338)
T ss_pred HHHHHHHHHHhcc--CCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecch
Confidence 2356677776664 66777775443 3333 5578888888775 3566666654
No 175
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=49.11 E-value=1.3e+02 Score=25.16 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=49.7
Q ss_pred EEEcCCCChh-hHHHHHHHHHHHHHHhcCCeEE-EEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 157 CIVTCGGLCP-GLNTVIREIVYSLYYMYGVKRV-LGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 157 aIvtsGG~~P-GlN~vIr~lv~~l~~~~g~~~V-~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
.++.-|..-| ..|..++.+.+.+.+..+...+ +|+... ..+.++++
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 4455677777 8999999999988764432222 122221 34678899
Q ss_pred HHHHHHcCCCEEEEE-----cCCcch-HHHHHHHHHHH
Q 009804 235 VDSIQDRGINQVYII-----GGDGTQ-KGASVIYEEVR 266 (525)
Q Consensus 235 v~~l~~~~Id~L~vI-----GGdgS~-~~A~~L~e~~~ 266 (525)
++.|++.|++.++++ -|..+. +-...+.+..+
T Consensus 51 l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 51 IRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred HHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHHH
Confidence 999999999987764 355555 34444544443
No 176
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=48.65 E-value=41 Score=30.38 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
.+++.+.+++++.++++.||+-+..+... ++++|.++.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~~---lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVER---LRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHHH---HHHcCCEEEEEccC
Confidence 45566667799999999999988876544 45569988888877
No 177
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=48.08 E-value=22 Score=33.76 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=36.8
Q ss_pred cccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 221 VLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 221 iLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
+++--|..+.+.+.++++++.+++.+|.+-|-...-. -.++-. ...+|||||-. .+.+.+.|
T Consensus 34 V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~~-----t~~PVIgvP~~-~~~~~g~d 95 (150)
T PF00731_consen 34 VASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVASL-----TTLPVIGVPVS-SGYLGGLD 95 (150)
T ss_dssp E--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHHH-----SSS-EEEEEE--STTTTTHH
T ss_pred EEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhheec-----cCCCEEEeecC-cccccCcc
Confidence 3444576677888888888888888777766533332 233332 35789999943 44566555
No 178
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=48.03 E-value=37 Score=36.16 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+...++++.+.+.+. |.++.|||--+++.|..++-.+ .||. +.+.||.|.
T Consensus 60 ~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~-~rgi--~~i~iPTTl 112 (346)
T cd08196 60 EAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIY-MRGV--SWSFVPTTL 112 (346)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHH-HcCC--CeEEecccH
Confidence 357899999999999 8999999999999998887533 4674 688899987
No 179
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.97 E-value=2.9e+02 Score=27.34 Aligned_cols=121 Identities=17% Similarity=0.092 Sum_probs=63.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTSK 233 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~~ 233 (525)
|||++...-..|-.+.+++++...+.. +|. ++. ++..+... ....+
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~ 47 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAK-LGI-EVV-------------------------------ATTDAQFDPAKQVA 47 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHH-cCC-EEE-------------------------------EecCCCCCHHHHHH
Confidence 467666555567778888888777754 442 221 01111111 22446
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec-ccc--CCC---CCCc--hhhHHHHHHhhhc--C
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK-TID--NDI---PVPL--LTWFIAMYATLAS--R 303 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK-TID--NDI---~gtD--~sG~IAl~aaLAs--~ 303 (525)
.++.+...++|++++.+-+... .....+.+.++|+++-++.-+. ... .++ ..+| .+|..++..-... +
T Consensus 48 ~l~~~~~~~~dgiii~~~~~~~--~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g 125 (294)
T cd06316 48 DIETTISQKPDIIISIPVDPVS--TAAAYKKVAEAGIKLVFMDNVPSGLEHGKDYAGIVTDDNYGNGQIAADALAKALPG 125 (294)
T ss_pred HHHHHHHhCCCEEEEcCCCchh--hhHHHHHHHHcCCcEEEecCCCcccccCcceEEEEccCcHHHHHHHHHHHHHHhCC
Confidence 6777778899999987655321 1223345556675533332211 110 111 2245 6788776655442 3
Q ss_pred CccEEEc
Q 009804 304 DVDCCLI 310 (525)
Q Consensus 304 ~ad~iLI 310 (525)
+-.+.++
T Consensus 126 ~~~i~~l 132 (294)
T cd06316 126 KGKVGLI 132 (294)
T ss_pred CceEEEE
Confidence 4566555
No 180
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=47.90 E-value=1.9e+02 Score=28.29 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=50.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+||++...-.-|-...+++++.+.+.. +|. ++. +-++...+...+.
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~~ 46 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKE-KGF-TVV--------------------------------KIDVPDGEKVLSA 46 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EccCCCHHHHHHH
Confidence 467777544567778888888887764 442 221 1111112234467
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
++.+...++|++++.+-|... ...+.+++.+.+++ ||.+
T Consensus 47 i~~~~~~~~dgiii~~~~~~~--~~~~~~~~~~~~iP--vV~~ 85 (289)
T cd01540 47 IDNLGAQGAKGFVICVPDVKL--GPAIVAKAKAYNMK--VVAV 85 (289)
T ss_pred HHHHHHcCCCEEEEccCchhh--hHHHHHHHHhCCCe--EEEe
Confidence 778888999999999876322 23334555566754 5544
No 181
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=47.48 E-value=78 Score=29.68 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-hhhHHHHHHhhhcCCccEEEc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL-LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD-~sG~IAl~aaLAs~~ad~iLI 310 (525)
+.+++.|+++||+.+|-+=|++...-. +.+.+.. .+.+|... -+ .++|+|...+.+++.+-+|+.
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~~~~l~----~al~~~~-~i~~i~~~---------~E~~A~~~A~g~ar~~g~~~v~~~ 70 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSGNLPLL----DALEKSP-GIRFIPVR---------HEQGAAFMADGYARATGRPGVVIV 70 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GGGHHHH----HHHHHTT-TSEEEE-S---------SHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEeChhHhHHH----HHhhhhc-ceeeeccc---------CcchhHHHHHHHHHhhccceEEEe
Confidence 678999999999999999999987744 4444442 24455322 12 899999999988877777776
Q ss_pred CC
Q 009804 311 PE 312 (525)
Q Consensus 311 PE 312 (525)
.-
T Consensus 71 ~~ 72 (172)
T PF02776_consen 71 TS 72 (172)
T ss_dssp ET
T ss_pred ec
Confidence 54
No 182
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=47.27 E-value=41 Score=35.63 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHcC--CCEEEEEcCCcchHHHHHHHHHHHHc-----------C------CceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRG--INQVYIIGGDGTQKGASVIYEEVRRR-----------G------LKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~--Id~L~vIGGdgS~~~A~~L~e~~~~~-----------g------~~i~VIgIPKTI 281 (525)
+..+++++.+++.+ .|.++-|||--.++.|..++-..... + -.+++|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa 136 (355)
T TIGR03405 65 AQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTA 136 (355)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCC
Confidence 35778888888888 99999999999999998775432110 0 136899999885
No 183
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=47.12 E-value=3e+02 Score=27.36 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=50.1
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~~i 234 (525)
||++...-.-|-.+.+++++.+.+.+ +|...++ +.+.++. .......
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~-~g~~~~i-------------------------------~~~~~~~d~~~q~~~ 48 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKE-LGSVYII-------------------------------YTGPTGTTAEGQIEV 48 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHH-hCCeeEE-------------------------------EECCCCCCHHHHHHH
Confidence 35555555568888888888887764 4421111 1112222 1234567
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
++.|...++|++++.+-|. .......+.++++|+ +||.+
T Consensus 49 i~~l~~~~vdgiIi~~~~~--~~~~~~l~~~~~~gi--PvV~~ 87 (302)
T TIGR02637 49 VNSLIAQKVDAIAISANDP--DALVPALKKAMKRGI--KVVTW 87 (302)
T ss_pred HHHHHHcCCCEEEEeCCCh--HHHHHHHHHHHHCCC--EEEEe
Confidence 8888899999999987642 222233355566675 45543
No 184
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=46.99 E-value=34 Score=37.13 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHH--------------HcC-----CceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVR--------------RRG-----LKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~--------------~~g-----~~i~VIgIPKTI 281 (525)
+...++++.+++.++|.+|-|||--.++.|..++-... .++ -.+++|.||-|-
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 138 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTA 138 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCC
Confidence 45788999999999999999999999999987763221 011 125899999994
No 185
>PLN02834 3-dehydroquinate synthase
Probab=46.74 E-value=34 Score=37.66 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHcCCC---EEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+.++++| .++.|||.-.++.|..++-.. .+| +++|.||-|.
T Consensus 147 ~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl 199 (433)
T PLN02834 147 ETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV 199 (433)
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC
Confidence 4578888999999998 999999999999998776432 346 5799999994
No 186
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.14 E-value=3.2e+02 Score=27.39 Aligned_cols=68 Identities=9% Similarity=0.122 Sum_probs=40.9
Q ss_pred HHHHHHHHHHc--CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC---------------C--CCCc--
Q 009804 231 TSKIVDSIQDR--GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND---------------I--PVPL-- 289 (525)
Q Consensus 231 ~~~iv~~l~~~--~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND---------------I--~gtD-- 289 (525)
...+++.+..+ ++|++++...+... ..+.+++.++|++ ||.+=..++.. + ..+|
T Consensus 45 ~~~~i~~~~~~~~~vdgiIi~~~~~~~---~~~~~~~~~~giP--vV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~ 119 (305)
T cd06324 45 MLQQARTILQRPDKPDALIFTNEKSVA---PELLRLAEGAGVK--LFLVNSGLTEAQARELGPPREKFPDWLGQLLPNDE 119 (305)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCccch---HHHHHHHHhCCCe--EEEEecCCCcchhhcccccccccCceeeeeccCcH
Confidence 45778889999 99999998765322 2233556666765 45443333221 1 1245
Q ss_pred hhhHHHHHHhhhcC
Q 009804 290 LTWFIAMYATLASR 303 (525)
Q Consensus 290 ~sG~IAl~aaLAs~ 303 (525)
.+|..++..-+..+
T Consensus 120 ~~g~~~~~~l~~~g 133 (305)
T cd06324 120 EAGYLMAEALISQA 133 (305)
T ss_pred HHHHHHHHHHHHHh
Confidence 77888776655553
No 187
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=45.83 E-value=49 Score=34.56 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHc-CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC
Q 009804 229 HDTSKIVDSIQDR-GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP 288 (525)
Q Consensus 229 ~d~~~iv~~l~~~-~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt 288 (525)
...+++.+.+++. +.|.++-|||--.++.|..++. .++ +++|.||-|.-+|-..+
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~---~~~--~p~i~vPTt~~tgs~~s 116 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAF---LRG--IPLSVPTTNLNDDGIAS 116 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHh---hcC--CCEEEecCccccCcccc
Confidence 4577777777777 5999999999999999998876 345 57999999998766544
No 188
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=45.43 E-value=40 Score=35.41 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND 284 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND 284 (525)
..+++++.+++ +.|.++-|||--.++.|..++ + .++ +++|.||-|.-+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~--~~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-F--KVG--KPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-H--HcC--CCEEEeCCCcccC
Confidence 46788888888 999999999999999999887 3 245 5799999998654
No 189
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=44.71 E-value=34 Score=35.98 Aligned_cols=46 Identities=7% Similarity=0.247 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
..+++++.+++ +.|.++-|||--.++.|..++.. ++ +++|.||-|-
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~~--~p~i~IPTTa 114 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---TG--IPYISVPTAP 114 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---cC--CCEEEecCcc
Confidence 46677777877 99999999999999999988742 34 5799999993
No 190
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=44.07 E-value=2.9e+02 Score=26.33 Aligned_cols=120 Identities=13% Similarity=0.022 Sum_probs=72.1
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
||++..+-.-|....+++++-+.+.. +|. ++.-+. +.....+..+++
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~~-------------------------------~~~~~~~~~~~~ 48 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEA-AGY-QLLLGN-------------------------------TGYSPEREEELL 48 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHH-cCC-EEEEec-------------------------------CCCCchhHHHHH
Confidence 67787776788888888888877764 452 222110 111123356788
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCC---CCCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDI---PVPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI---~gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+.+...++|++++.+-+.+. . ..+.+.+.++ +||.+=.+.++.. .++| .+|..|+.--+..+.-.+++|
T Consensus 49 ~~l~~~~vdgiii~~~~~~~-~---~~~~~~~~~i--pvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i 122 (268)
T cd01575 49 RTLLSRRPAGLILTGLEHTE-R---TRQLLRAAGI--PVVEIMDLPPDPIDMAVGFSHAEAGRAMARHLLARGYRRIGFL 122 (268)
T ss_pred HHHHHcCCCEEEEeCCCCCH-H---HHHHHHhcCC--CEEEEecCCCCCCCCeEEeCcHHHHHHHHHHHHHCCCCcEEEe
Confidence 88899999999999877552 1 2233344564 5665522222221 2345 788888775555555667777
Q ss_pred CCCC
Q 009804 311 PESP 314 (525)
Q Consensus 311 PE~p 314 (525)
-..+
T Consensus 123 ~~~~ 126 (268)
T cd01575 123 GARM 126 (268)
T ss_pred cCCC
Confidence 6543
No 191
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=43.85 E-value=71 Score=28.61 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=46.6
Q ss_pred hhhhcccccCcccccccC---C-CC-cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 209 KGVNDIHKRGGTVLGTSR---G-GH-DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 209 ~~v~~i~~~GGtiLGSsR---~-~~-d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
.++..|...|-=+|-|.- . .+ ...+.++.|.+.++-+|.+--|..--.--..+.+++.++++ +++.+|..
T Consensus 34 ~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~l--Pli~ip~~ 108 (123)
T PF07905_consen 34 PDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGL--PLIEIPWE 108 (123)
T ss_pred CCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCC--CEEEeCCC
Confidence 366777555444444432 2 22 37899999999999999996663333444556677777775 58999984
No 192
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=43.76 E-value=64 Score=31.20 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=43.7
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
.++.++ ||.-. ++..+...+...|++.+|.|. +||-. .+ -..+.++.|...+-++|-.+-+-+..+.
T Consensus 49 ~~vfll--G~~~~----v~~~~~~~l~~~yP~l~i~g~-~g~f~---~~---~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 49 LPIFLY--GGKPD----VLQQLKVKLIKEYPKLKIVGA-FGPLE---PE---ERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred CeEEEE--CCCHH----HHHHHHHHHHHHCCCCEEEEE-CCCCC---hH---HHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 455554 55544 666666667778988888887 66631 10 1122345555555555544444344444
Q ss_pred HHHHH-HHcCCCEEEEEcC
Q 009804 234 IVDSI-QDRGINQVYIIGG 251 (525)
Q Consensus 234 iv~~l-~~~~Id~L~vIGG 251 (525)
.+... +.++...++-+||
T Consensus 116 ~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHhHHhCCCcEEEEece
Confidence 44433 2233333444444
No 193
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=43.53 E-value=2.8e+02 Score=26.01 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=69.9
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTSK 233 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~~ 233 (525)
+||++......|-...+++++...+.. +|. ++.- ...+. ......
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~-~g~-~~~~--------------------------------~~~~~~~~~~~~ 46 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAARE-AGY-SVLL--------------------------------CNSDEDPEKERE 46 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH-cCC-EEEE--------------------------------EcCCCCHHHHHH
Confidence 467777766788888888888877754 332 2211 01111 123456
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCCC--Cc--hhhHHHHHHhhhcCCccEE
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIPV--PL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~g--tD--~sG~IAl~aaLAs~~ad~i 308 (525)
+++.+...+++++++.+.+.+... .+.+.+.+++ ||.+=...+ +.++. +| .+|.+++......+.-.++
T Consensus 47 ~~~~~~~~~~d~iii~~~~~~~~~----~~~~~~~~ip--vv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~ 120 (264)
T cd06267 47 ALELLLSRRVDGIILAPSRLDDEL----LEELAALGIP--VVLVDRPLDGLGVDSVGIDNRAGAYLAVEHLIELGHRRIA 120 (264)
T ss_pred HHHHHHHcCcCEEEEecCCcchHH----HHHHHHcCCC--EEEecccccCCCCCEEeeccHHHHHHHHHHHHHCCCceEE
Confidence 777788889999999998876544 3344556755 454422222 22222 23 7788776655554445666
Q ss_pred EcCCC
Q 009804 309 LIPES 313 (525)
Q Consensus 309 LIPE~ 313 (525)
++-..
T Consensus 121 ~i~~~ 125 (264)
T cd06267 121 FIGGP 125 (264)
T ss_pred EecCC
Confidence 66433
No 194
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=43.46 E-value=46 Score=35.97 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCC---EEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 231 TSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 231 ~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
..++.+.+.+++.+ .++.+||-=..+.|..++-. ..+| ++.|.||-|
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT 134 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC
Confidence 67899999999998 99999999999998888764 3457 568999999
No 195
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=43.24 E-value=28 Score=31.20 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCc---eeEEEeeccccCCCC
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLK---VVVAGIPKTIDNDIP 286 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~---i~VIgIPKTIDNDI~ 286 (525)
..+.++++|||||...+.. .+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999988643 22222322 567778875577754
No 196
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=43.17 E-value=31 Score=30.78 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
.+.++|++..++.+++. +.||.|-+.-...|++.+.+.|+ .++|-
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 67999999999997766 56999999999999999998884 46653
No 197
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.00 E-value=3.1e+02 Score=26.33 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC----CCCCc--hhhHHHHHHhhhc--
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND----IPVPL--LTWFIAMYATLAS-- 302 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND----I~gtD--~sG~IAl~aaLAs-- 302 (525)
..++++.+..+++|++++.+-+... ....+ +.+++.++ +||.+-.+.+.. .-++| .+|.+|+..-+..
T Consensus 44 ~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~-~~~~~~~i--pvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~ 119 (267)
T cd06322 44 QLSDVEDFITKKVDAIVLSPVDSKG-IRAAI-AKAKKAGI--PVITVDIAAEGVAVVSHVATDNYAGGVLAGELAAKVLN 119 (267)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChhh-hHHHH-HHHHHCCC--CEEEEcccCCCCceEEEEecChHHHHHHHHHHHHHHhC
Confidence 5577888889999999998765321 11223 44555665 455554333321 12344 7788777655543
Q ss_pred CCccEEEcC
Q 009804 303 RDVDCCLIP 311 (525)
Q Consensus 303 ~~ad~iLIP 311 (525)
+.-.++++-
T Consensus 120 g~~~i~~i~ 128 (267)
T cd06322 120 GKGQVAIID 128 (267)
T ss_pred CCceEEEEe
Confidence 344666653
No 198
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=42.82 E-value=26 Score=31.19 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
.+.+.+.+..++.++++-||+-+..+. +.++++|.++-|++.+...
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~ 131 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSA 131 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCC
Confidence 444445555679999999999988765 4445679888888865443
No 199
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=42.72 E-value=3.1e+02 Score=26.23 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=66.3
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
||++...-..|=...+++++.+.+.. +|. +++- .-+........+++
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~~~i 48 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALK-HGY-KVVL-------------------------------LQTNYDKEKELEYL 48 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHH-cCC-EEEE-------------------------------EeCCCChHHHHHHH
Confidence 66777655566666777787777654 442 2221 11111223345778
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCCCCc--hhhHHHHHHhhhcCCccEEEcCC
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIPVPL--LTWFIAMYATLASRDVDCCLIPE 312 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~gtD--~sG~IAl~aaLAs~~ad~iLIPE 312 (525)
+.+...++|++++.+-+.+... + +.+.+++ ++-++.-+.. ++ +.-++| .+|..|+.--+..+.-.+++|-.
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~~-pvv~~~~~~~-~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~ 122 (260)
T cd06286 49 ELLKTKQVDGLILCSRENDWEV---I-EPYTKYG-PIVLCEEYDS-KNISSVYIDHYEAFYEALKYLIQKGYRKIAYCIG 122 (260)
T ss_pred HHHHHcCCCEEEEeCCCCCHHH---H-HHHhcCC-CEEEEecccC-CCCCEEEECChHHHHHHHHHHHHCCCceEEEEcC
Confidence 8899999999999887654332 2 2233334 4433332211 11 112234 88888877666665667777743
No 200
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=42.60 E-value=4.6e+02 Score=28.11 Aligned_cols=141 Identities=20% Similarity=0.204 Sum_probs=69.3
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhh--hccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRG--FYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 158 IvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~G--L~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
+||+||.-. |-+|+..-.+. +.| .+...+..++.- +.++++.-.+..-.+--.-..|+-++- ....+...
T Consensus 67 lvT~GgiQS---Nh~r~tAavA~-~lG-l~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~---~~~~~~~~ 138 (323)
T COG2515 67 LVTYGGIQS---NHVRQTAAVAA-KLG-LKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGI---NASAEELA 138 (323)
T ss_pred EEEecccch---hHHHHHHHHHH-hcC-CcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhh---chhhHHHH
Confidence 577888766 45555555444 367 467777777761 111111110000000000111211111 12345666
Q ss_pred HHHHHcC-CCEEEEEcC------CcchHHHHHHHHHHHH-cCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccE
Q 009804 236 DSIQDRG-INQVYIIGG------DGTQKGASVIYEEVRR-RGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDC 307 (525)
Q Consensus 236 ~~l~~~~-Id~L~vIGG------dgS~~~A~~L~e~~~~-~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~ 307 (525)
+.+++.+ =.++|..|| -|=++.|.+|.+.+++ ..++. ||..|.| .+| +||+++-.+.+-- +.++
T Consensus 139 e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~-vVva~gs-----~gT-~AGl~~g~~~~~~-~~~V 210 (323)
T COG2515 139 EEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDS-VVVAPGS-----GGT-HAGLLVGLAQLGP-DVEV 210 (323)
T ss_pred HHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCE-EEEeCCC-----cch-HHHHHHHhhhccC-CCce
Confidence 6666664 445555666 3445677777777665 34443 4444443 122 7888776666544 5666
Q ss_pred EEcCCCC
Q 009804 308 CLIPESP 314 (525)
Q Consensus 308 iLIPE~p 314 (525)
|=||=..
T Consensus 211 iG~~v~~ 217 (323)
T COG2515 211 IGIDVSA 217 (323)
T ss_pred EEEeecC
Confidence 6655443
No 201
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=42.49 E-value=2.3e+02 Score=28.02 Aligned_cols=85 Identities=14% Similarity=0.000 Sum_probs=48.2
Q ss_pred EEEEEcCCCC-hhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 155 YACIVTCGGL-CPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 155 ~iaIvtsGG~-~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
||+|++...+ ..|+...++.+++.+.+......++....+.......... ++..............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQ-------------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcc-------------cceeeeecCCchhHHH
Confidence 5788887655 6799999999999997532222344433332221111100 1111111111235667
Q ss_pred HHHHHHHcCCCEEEEEcCC
Q 009804 234 IVDSIQDRGINQVYIIGGD 252 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGd 252 (525)
+.+.+++.+.|.+++.-..
T Consensus 68 ~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 68 AARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHhhcCCCEEEEeecc
Confidence 7888899999988876543
No 202
>PRK10586 putative oxidoreductase; Provisional
Probab=42.43 E-value=39 Score=36.13 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP 288 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt 288 (525)
++.+++.+..+ .+.|.+|-|||.-+++.|..++.. ..+++|.||-|--+|-..+
T Consensus 74 ~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s 127 (362)
T PRK10586 74 SDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWT 127 (362)
T ss_pred HHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCcccccccc
Confidence 44556666554 588999999999999999999853 3468999999988886654
No 203
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=42.18 E-value=35 Score=36.83 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
.++.+++...+.+.+.|.++=|||--+++.|..++.. .| +++|.||-+=.+|=+
T Consensus 70 ~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~---~~--~pfIsvPT~AS~Da~ 123 (360)
T COG0371 70 EEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR---LG--LPFISVPTIASTDAI 123 (360)
T ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH---cC--CCEEEecCccccccc
Confidence 3578888888888899999999999999999998864 24 679999988777755
No 204
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.94 E-value=3.3e+02 Score=26.37 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc---CCCC--CCc--hhhHHHHHHhhh-c
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID---NDIP--VPL--LTWFIAMYATLA-S 302 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID---NDI~--gtD--~sG~IAl~aaLA-s 302 (525)
..+.++.+...++|++++.+.+.. ....+.+.++++|+++-+++- ..+ +.++ ++| .+|..++.--+. .
T Consensus 44 ~~~~i~~~~~~~~Dgiii~~~~~~--~~~~~i~~~~~~~iPvV~~~~--~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~ 119 (282)
T cd06318 44 QIADVEDLLTRGVNVLIINPVDPE--GLVPAVAAAKAAGVPVVVVDS--SINLEAGVVTQVQSSNAKNGNLVGEWVVGEL 119 (282)
T ss_pred HHHHHHHHHHcCCCEEEEecCCcc--chHHHHHHHHHCCCCEEEecC--CCCCCcCeEEEEecCcHHHHHHHHHHHHHHh
Confidence 457888899999999998775522 222333555566766444432 222 2222 234 567777654444 2
Q ss_pred CC--ccEEEcC
Q 009804 303 RD--VDCCLIP 311 (525)
Q Consensus 303 ~~--ad~iLIP 311 (525)
++ -+++++.
T Consensus 120 g~~~~~i~~i~ 130 (282)
T cd06318 120 GDKPMKIILLS 130 (282)
T ss_pred CCCCceEEEEE
Confidence 32 3666664
No 205
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=41.52 E-value=3.4e+02 Score=26.39 Aligned_cols=113 Identities=10% Similarity=-0.112 Sum_probs=62.2
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
||++...=.-|-...++.++.+.+.+ +|. +++ +-+++...+..+.+
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~-~gy-~~~--------------------------------~~~~~~~~~~~~~~ 47 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLE-QRY-DLA--------------------------------LFPLLSLARLKRYL 47 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCcHHHHHHH
Confidence 56666543456677788888777764 442 222 11122223344555
Q ss_pred H-HHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 236 D-SIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 236 ~-~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+ .+..+++|++++.+.+-... ..+.+++.++++-+++-+. .++. .+| .+|+.|+..=+.. .-++.++
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~iPvv~~~~~~---~~~~~v~~d~~~~g~~a~~~L~~~-~~~i~~i 119 (269)
T cd06297 48 ESTTLAYLTDGLLLASYDLTER----LAERRLPTERPVVLVDAEN---PRFDSFYLDNRLGGRLAGAYLADF-PGRIGAI 119 (269)
T ss_pred HHHHHhcCCCEEEEecCccChH----HHHHHhhcCCCEEEEccCC---CCCCEEEECcHHHHHHHHHHHHHh-CCceEEE
Confidence 4 58889999999998764322 3344555676654454332 1122 234 7888886544444 3344433
No 206
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.12 E-value=68 Score=32.64 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=42.2
Q ss_pred cccCcccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 215 HKRGGTVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 215 ~~~GGtiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
...|+.+.+..+. ..|+...+..++..+-|.+++.|..+ .+..+.+.+++.|+++++++.
T Consensus 160 ~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 222 (340)
T cd06349 160 EKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYN---DGAPIARQARAVGLDIPVVAS 222 (340)
T ss_pred HHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEcc
Confidence 3456666655443 35788999999999999988877433 334466777788988777764
No 207
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=40.43 E-value=87 Score=33.97 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=48.2
Q ss_pred EEEEEcCCcc-hHH-HHHHHHHHHHcCCceeEEEeeccccCCCCCCc--------------------------hhhHHHH
Q 009804 245 QVYIIGGDGT-QKG-ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--------------------------LTWFIAM 296 (525)
Q Consensus 245 ~L~vIGGdgS-~~~-A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--------------------------~sG~IAl 296 (525)
.++++||||- ++. -..|. ...++|.+|.+|. +||-+++.- +-+-||+
T Consensus 153 ~v~v~gGDG~~ydIG~~~l~-ha~~r~~ni~~iv----~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~ 227 (365)
T cd03377 153 SVWIIGGDGWAYDIGYGGLD-HVLASGENVNILV----LDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAM 227 (365)
T ss_pred ceEEEecchhhhccchhhHH-HHHHcCCCeEEEE----ECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHH
Confidence 7999999993 332 22232 2334677887875 488877522 5566665
Q ss_pred HHhhhcCCccEEEcCCC--CCCccchhhHHHHHHHHHHcCCcEEEEE
Q 009804 297 YATLASRDVDCCLIPES--PFYLEGHGGLFEYIETRLKENGHMVIVI 341 (525)
Q Consensus 297 ~aaLAs~~ad~iLIPE~--pf~leg~~~lle~I~~rl~~~g~~VIVV 341 (525)
..+ +- |+--. ..+ +..+++.|++-++.+|.++|.+
T Consensus 228 a~g-----~~--YVA~~s~~~~---~~~~~~~i~eA~~~~Gps~I~v 264 (365)
T cd03377 228 SYG-----NV--YVAQIALGAN---DNQTLKAFREAEAYDGPSLIIA 264 (365)
T ss_pred HcC-----CC--EEEEEecccC---HHHHHHHHHHHhcCCCCEEEEE
Confidence 433 11 22111 123 3368888888777788887754
No 208
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.15 E-value=3.9e+02 Score=26.57 Aligned_cols=79 Identities=6% Similarity=0.049 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCc---------chHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc----------h
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDG---------TQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL----------L 290 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdg---------S~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD----------~ 290 (525)
.+++.++.++++|++++=+-..+. +...+..|.+.++++|+.+..++.+.....++...| -
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHH
Confidence 689999999999999996643221 234577888888899988776655432222333333 2
Q ss_pred hhHHHHHHhhhcCCccEEEcC
Q 009804 291 TWFIAMYATLASRDVDCCLIP 311 (525)
Q Consensus 291 sG~IAl~aaLAs~~ad~iLIP 311 (525)
--+|.++..| +++.+.+|
T Consensus 97 ~~~i~~a~~l---G~~~v~~~ 114 (284)
T PRK13210 97 KKAIRLAQDL---GIRTIQLA 114 (284)
T ss_pred HHHHHHHHHh---CCCEEEEC
Confidence 3455555554 57777776
No 209
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=40.15 E-value=29 Score=27.59 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHH
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGAS 259 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~ 259 (525)
-+..+.|++++|| |+-||+-|+..|.
T Consensus 13 p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 13 PRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred hHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 4667889999999 7899999987665
No 210
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.08 E-value=3.7e+02 Score=26.34 Aligned_cols=77 Identities=9% Similarity=0.055 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC---C-C--CCCc--hhhHHHHHHhhh
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN---D-I--PVPL--LTWFIAMYATLA 301 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN---D-I--~gtD--~sG~IAl~aaLA 301 (525)
...+.++.+..+++|++++...+-. . ...+.+++.+.+++ ||.+=..+++ + . -.+| .+|.+++..-+.
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~-~-~~~~i~~~~~~~iP--vV~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~ 118 (272)
T cd06313 43 KQVAAIENMASQGWDFIAVDPLGIG-T-LTEAVQKAIARGIP--VIDMGTLIAPLQINVHSFLAPDNYFMGASVAQALCN 118 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChH-H-hHHHHHHHHHCCCc--EEEeCCCCCCCCCceEEEECCCcHHHHHHHHHHHHH
Confidence 3457788888999999999865421 1 22233555556755 5544222222 1 1 1345 678888776555
Q ss_pred c--CCccEEEc
Q 009804 302 S--RDVDCCLI 310 (525)
Q Consensus 302 s--~~ad~iLI 310 (525)
. +.-+++++
T Consensus 119 ~~~g~~~i~~l 129 (272)
T cd06313 119 AMGGKGKIAML 129 (272)
T ss_pred HcCCCceEEEE
Confidence 4 45577776
No 211
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=39.96 E-value=39 Score=26.49 Aligned_cols=51 Identities=10% Similarity=0.290 Sum_probs=36.9
Q ss_pred ccccCCCCcHHHHHHHHHHcCCCE------------EEEEcCCcchHHHHHHHHHHH-HcCCce
Q 009804 222 LGTSRGGHDTSKIVDSIQDRGINQ------------VYIIGGDGTQKGASVIYEEVR-RRGLKV 272 (525)
Q Consensus 222 LGSsR~~~d~~~iv~~l~~~~Id~------------L~vIGGdgS~~~A~~L~e~~~-~~g~~i 272 (525)
+|+-+...+.++.++.|+..+++. -+.+|...+...|..+.+.++ ..+.+.
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~~ 72 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPDA 72 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS--
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCCC
Confidence 456666667888999999999884 678899999999999888888 566653
No 212
>PRK05670 anthranilate synthase component II; Provisional
Probab=39.81 E-value=46 Score=31.83 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=31.9
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhh
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATL 300 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaL 300 (525)
++.++.|+||+-||.|+...+....+.+++..-+++|.||- -|+-.+..++
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIC------------lG~Qlla~al 89 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVC------------LGHQAIGEAF 89 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEEC------------HHHHHHHHHh
Confidence 35567899999999999765443333333222236788873 3676666555
No 213
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=39.78 E-value=2.3e+02 Score=27.60 Aligned_cols=77 Identities=9% Similarity=-0.071 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCC--CCCc--hhhHHHHHHhhhc-C--
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDI--PVPL--LTWFIAMYATLAS-R-- 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI--~gtD--~sG~IAl~aaLAs-~-- 303 (525)
..+.++.+.+ ++|+++++..+.+. .....+++.+.++++-+++-+.+-...+ -.+| .+|++|+..-+.. +
T Consensus 48 ~~~~i~~~~~-~vdgiii~~~~~~~--~~~~i~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~ 124 (275)
T cd06307 48 LAAALLRLGA-RSDGVALVAPDHPQ--VRAAVARLAAAGVPVVTLVSDLPGSPRAGYVGIDNRAAGRTAAWLIGRFLGRR 124 (275)
T ss_pred HHHHHHHHHh-cCCEEEEeCCCcHH--HHHHHHHHHHCCCcEEEEeCCCCCCceeeEEccChHHHHHHHHHHHHHHhCCC
Confidence 4566777878 99999999876432 1223355555675533332221100111 1234 8899886433332 2
Q ss_pred CccEEEc
Q 009804 304 DVDCCLI 310 (525)
Q Consensus 304 ~ad~iLI 310 (525)
+-.+.++
T Consensus 125 ~~~i~~i 131 (275)
T cd06307 125 PGKVAVL 131 (275)
T ss_pred CCeEEEE
Confidence 3466666
No 214
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=39.65 E-value=61 Score=34.33 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHcC---CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRG---INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~---Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+.+++ .|.++.|||--.++.|..++... .++ +++|.||-|.
T Consensus 67 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl 119 (344)
T cd08169 67 ETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL 119 (344)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc
Confidence 34788888899887 89999999999999998887643 346 5789999995
No 215
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=39.30 E-value=50 Score=36.92 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=71.4
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHh------cCCeEEEEEccchhhhccCCeEeCChhhhhccccc--CcccccccCCC-
Q 009804 158 IVTCGGLCPGLNTVIREIVYSLYYM------YGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR--GGTVLGTSRGG- 228 (525)
Q Consensus 158 IvtsGG~~PGlN~vIr~lv~~l~~~------~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~--GGtiLGSsR~~- 228 (525)
++-..+..+ ..++..++...... -+...|+-..++.... .+..+-++.+.|..++.. --..+--.-++
T Consensus 140 ~IDt~~~s~--~e~~~~iv~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~ 216 (488)
T PRK13951 140 GIDTSKLNE--WETTALVVLEALDEKEISTIEKPHLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEE 216 (488)
T ss_pred EEECCCCCH--HHHHHHHHHHhhhcceeeecCCceeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCC
Confidence 333344544 45666666544432 1123455444444444 346566777777654321 00111001111
Q ss_pred ----CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 ----HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ----~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.|.++++ +.++.+||--..+.|..+|... .|| |+.|.||-|+
T Consensus 217 ~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y-~RG--i~~i~vPTTl 273 (488)
T PRK13951 217 VKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF-KRG--VGLSFYPTTL 273 (488)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-hcC--CCeEecCccH
Confidence 247899999999999 9999999998888888777654 468 5689999996
No 216
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=38.99 E-value=57 Score=35.34 Aligned_cols=47 Identities=28% Similarity=0.402 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCC---EEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 231 TSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 231 ~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
..++.+.+++++.+ .++.|||-=+++.|..++-. ..+| ++.|.||-|
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT 146 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC
Confidence 78899999999998 99999999999998877643 3356 579999999
No 217
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=38.84 E-value=2.2e+02 Score=25.64 Aligned_cols=96 Identities=22% Similarity=0.466 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-hhhHHHHHHhhhcCCccEEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL-LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD-~sG~IAl~aaLAs~~ad~iL 309 (525)
++.+++.+++.+++-+++++++. .+.+.+.+.+ +.+|--|. +... -+|..++...+- ..-.+++
T Consensus 27 i~~~l~~l~~~~~~~Ivvv~~~~------~~~~~~~~~~--~~~v~~~~------~~~G~~~sl~~a~~~~~-~~~~vlv 91 (160)
T PF12804_consen 27 IERVLEALREAGVDDIVVVTGEE------EIYEYLERYG--IKVVVDPE------PGQGPLASLLAALSQLP-SSEPVLV 91 (160)
T ss_dssp HHHHHHHHHHHTESEEEEEESTH------HHHHHHTTTT--SEEEE-ST------SSCSHHHHHHHHHHTST-TSSEEEE
T ss_pred HHHHHHHhhccCCceEEEecChH------HHHHHHhccC--ceEEEecc------ccCChHHHHHHHHHhcc-cCCCcEE
Confidence 79999999999999999999993 3444444444 44443322 2111 233333333321 1344556
Q ss_pred cCCC-CCCccchhhHHHHHHHHHHcCCc-EEEEEecC
Q 009804 310 IPES-PFYLEGHGGLFEYIETRLKENGH-MVIVIAEG 344 (525)
Q Consensus 310 IPE~-pf~leg~~~lle~I~~rl~~~g~-~VIVVAEG 344 (525)
+|=. || ++ .++++.+.+.+++.++ .+++..++
T Consensus 92 ~~~D~p~-~~--~~~l~~l~~~~~~~~~~i~~~~~~~ 125 (160)
T PF12804_consen 92 LPCDQPF-LS--PELLRRLLEALEKSPADIVVPVFRG 125 (160)
T ss_dssp EETTETT-S---HHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred EeCCccc-cC--HHHHHHHHHHHhccCCcEEEEEECC
Confidence 5544 45 22 2577777777776554 44455544
No 218
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=38.83 E-value=42 Score=34.05 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=48.6
Q ss_pred CChhhhhcccccCc--ccc-cccCCC--CcHHHHHHHHHHcCCCEEEEEcCCcchHH------------HHHHHHHHHHc
Q 009804 206 LTPKGVNDIHKRGG--TVL-GTSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKG------------ASVIYEEVRRR 268 (525)
Q Consensus 206 Lt~~~v~~i~~~GG--tiL-GSsR~~--~d~~~iv~~l~~~~Id~L~vIGGdgS~~~------------A~~L~e~~~~~ 268 (525)
.+......+.+.+| .+. =|+|.. .+++..+..+.++||+.+++++||-...+ |..|.+.+++.
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~ 124 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKE 124 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 34444455555555 111 245543 46888999999999999999999876543 77777777764
Q ss_pred ---CCceeEEEee
Q 009804 269 ---GLKVVVAGIP 278 (525)
Q Consensus 269 ---g~~i~VIgIP 278 (525)
++.+.+.+.|
T Consensus 125 ~~~~~~igva~yP 137 (274)
T cd00537 125 NGGGFSIGVAAYP 137 (274)
T ss_pred cCCCCccccccCC
Confidence 4566666666
No 219
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=38.78 E-value=3.2e+02 Score=25.18 Aligned_cols=103 Identities=14% Similarity=0.030 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-----CCC--CCc--hhhHHHHHHh
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-----DIP--VPL--LTWFIAMYAT 299 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-----DI~--gtD--~sG~IAl~aa 299 (525)
.+..++++.+...++++++..+.+..... +.+.+.+.+ +++|.+=.+.+. .+. .+| ..|..++...
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 35677788888889999988877765443 444555556 456665444332 111 122 5677666555
Q ss_pred hhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEE
Q 009804 300 LASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMV 338 (525)
Q Consensus 300 LAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~V 338 (525)
...+.-.+.++-.... .......+.+++.+++.+..+
T Consensus 120 ~~~~~~~i~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (269)
T cd01391 120 AEKGWKRVALIYGDDG--AYGRERLEGFKAALKKAGIEV 156 (269)
T ss_pred HHhCCceEEEEecCCc--chhhHHHHHHHHHHHhcCcEE
Confidence 5444445555533321 111245566666666665333
No 220
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.52 E-value=23 Score=31.37 Aligned_cols=27 Identities=30% Similarity=0.644 Sum_probs=24.1
Q ss_pred ccCCccceeccCCCeEEEEEcCCCChh
Q 009804 140 RAGPRQKVYFESDEVYACIVTCGGLCP 166 (525)
Q Consensus 140 ~aGpr~~~~f~~~~~~iaIvtsGG~~P 166 (525)
.-||-.++||+..+..+-+++|||+-.
T Consensus 56 d~GpGyRvY~~~~g~v~i~lLCgGdks 82 (100)
T COG3657 56 DHGPGYRVYFQQRGLVLILLLCGGDKS 82 (100)
T ss_pred ccCCceEEEEEecCcEEEEEeccCchh
Confidence 568888899999999999999999976
No 221
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=38.51 E-value=64 Score=33.70 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=25.7
Q ss_pred CEEEEEcCCcch--HHHHHHHHHHHHcCCceeEEEeeccccCCCCC
Q 009804 244 NQVYIIGGDGTQ--KGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV 287 (525)
Q Consensus 244 d~L~vIGGdgS~--~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g 287 (525)
.-+|++.|||++ -+...|.- +.+++++|.+|. +||...+
T Consensus 72 ~~VVai~GDG~f~~mg~~eL~t-A~r~nl~I~vIV----lNN~~yG 112 (287)
T TIGR02177 72 LKVIVVGGDGDLYGIGGNHFVA-AGRRNVDITVIV----HDNQVYG 112 (287)
T ss_pred CcEEEEeCchHHHhccHHHHHH-HHHhCcCeEEEE----EECHHHH
Confidence 358999999995 44555543 345688877774 3565543
No 222
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.25 E-value=1.5e+02 Score=29.19 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccEE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~i 308 (525)
+..+.+...++|++++.+-+.+.. ..+.+++.++++-+++.+.. .+++ ++| .+|..|+.--+..+.-.+.
T Consensus 47 ~~~~~~~~~~~dgiii~~~~~~~~----~~~~~~~~~ipvV~~~~~~~--~~~~~v~~d~~~~g~~~~~~L~~~g~~~i~ 120 (283)
T cd06279 47 SDSALVVSALVDGFIVYGVPRDDP----LVAALLRRGLPVVVVDQPLP--PGVPSVGIDDRAAAREAARHLLDLGHRRIG 120 (283)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChH----HHHHHHHcCCCEEEEecCCC--CCCCEEeeCcHHHHHHHHHHHHHcCCCcEE
Confidence 455678889999999998765432 23445556766544554443 3333 344 7788876655555555665
Q ss_pred Ec
Q 009804 309 LI 310 (525)
Q Consensus 309 LI 310 (525)
++
T Consensus 121 ~i 122 (283)
T cd06279 121 IL 122 (283)
T ss_pred Ee
Confidence 55
No 223
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=38.13 E-value=2.1e+02 Score=27.31 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc-cCCCCC--Cc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI-DNDIPV--PL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI-DNDI~g--tD--~sG~IAl~aaLAs~~ad 306 (525)
+.+.+.+.+.++|++++.+.+..... + +++.+.++ +||.+=... +++++. +| .+|..|+.-.+..+.-+
T Consensus 49 ~~~~~~~~~~~vdgiii~~~~~~~~~---~-~~~~~~~i--pvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~~ 122 (268)
T cd06271 49 EVYRRLVESGLVDGVIISRTRPDDPR---V-ALLLERGF--PFVTHGRTELGDPHPWVDFDNEAAAYQAVRRLIALGHRR 122 (268)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCChH---H-HHHHhcCC--CEEEECCcCCCCCCCeEeeCcHHHHHHHHHHHHHcCCCc
Confidence 34444556778999999887643221 2 34445565 455552211 233332 34 88998887777665566
Q ss_pred EEEcC
Q 009804 307 CCLIP 311 (525)
Q Consensus 307 ~iLIP 311 (525)
+.++-
T Consensus 123 i~~i~ 127 (268)
T cd06271 123 IALLN 127 (268)
T ss_pred EEEec
Confidence 77763
No 224
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=37.79 E-value=4.2e+02 Score=26.30 Aligned_cols=113 Identities=9% Similarity=-0.018 Sum_probs=63.1
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+|||+...=.-|-...++.++-..+.. +|. ++.-+ -+........
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~-~G~-~~~~~-------------------------------~~~~d~~~~~ 72 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADK-LGY-NLVVL-------------------------------DSQNNPAKEL 72 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHH-cCC-eEEEe-------------------------------cCCCCHHHHH
Confidence 44788887544567777888888777754 452 22110 0111122345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC--CC--CCCc--hhhHHHHHHhhhc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN--DI--PVPL--LTWFIAMYATLAS 302 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--DI--~gtD--~sG~IAl~aaLAs 302 (525)
..++.+..++++++++.+.+ +.. .....+.+++.+++ +|.+-...+. .+ -++| .+|..++..-++.
T Consensus 73 ~~~~~l~~~~~dgiii~~~~-~~~-~~~~l~~~~~~~ip--vV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~ 144 (295)
T PRK10653 73 ANVQDLTVRGTKILLINPTD-SDA-VGNAVKMANQANIP--VITLDRGATKGEVVSHIASDNVAGGKMAGDFIAKK 144 (295)
T ss_pred HHHHHHHHcCCCEEEEcCCC-hHH-HHHHHHHHHHCCCC--EEEEccCCCCCceeeEEccChHHHHHHHHHHHHHH
Confidence 67788888999999876544 221 11222445555654 5555433322 12 2355 7788887766654
No 225
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=37.53 E-value=1.3e+02 Score=23.63 Aligned_cols=51 Identities=22% Similarity=0.471 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
...+++++..++.|++.+.+-= -+++.+...+.+.+++.|+++ ++|+--++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTD-h~~~~~~~~~~~~~~~~gi~~-i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITD-HGNLFGAVEFYKAAKKAGIKP-IIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEee-CCcccCHHHHHHHHHHcCCeE-EEEEEEEe
Confidence 3588999999999999876654 448888888888888888764 77776554
No 226
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.53 E-value=3.8e+02 Score=25.72 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=65.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~~i 234 (525)
|||+...=.-|=.+.++.++...+.. +|. +++- +++.. .....++
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~-~gy-~~~~--------------------------------~~~~~~~~~~~~~ 47 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNG-SGY-SPII--------------------------------ATGHWNQSRELEA 47 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHH-CCC-EEEE--------------------------------EeCCCCHHHHHHH
Confidence 56666544556677788888777754 452 3221 11111 1235578
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCCC--Cc--hhhHHHHHHhhhcCCccEEE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIPV--PL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~g--tD--~sG~IAl~aaLAs~~ad~iL 309 (525)
++.+..+++|++++.+.+-+... + +.. +.++ +||.+=..++ +.++. +| .+|..|+.--+..|.-++++
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~~---~-~~~-~~~i--PvV~i~~~~~~~~~~~V~~d~~~a~~~~~~~l~~~g~~~i~~ 120 (265)
T cd06290 48 LELLKSRRVDALILLGGDLPEEE---I-LAL-AEEI--PVLAVGRRVPGPGAASIAVDNFQGGYLATQHLIDLGHRRIAH 120 (265)
T ss_pred HHHHHHCCCCEEEEeCCCCChHH---H-HHH-hcCC--CEEEECCCcCCCCCCEEEECcHHHHHHHHHHHHHCCCCeEEE
Confidence 88999999999999987643322 2 112 2354 4554433333 22332 33 77888776555555677777
Q ss_pred cC
Q 009804 310 IP 311 (525)
Q Consensus 310 IP 311 (525)
+-
T Consensus 121 i~ 122 (265)
T cd06290 121 IT 122 (265)
T ss_pred Ee
Confidence 74
No 227
>PRK05637 anthranilate synthase component II; Provisional
Probab=36.90 E-value=69 Score=31.59 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.3
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.+++.+.+++|+-||-|+...+....+.+++..-+++|.||-
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC 80 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC 80 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence 4445678999999999999988755444443222246788874
No 228
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=36.85 E-value=21 Score=38.10 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=44.6
Q ss_pred EeCChhhhhcccccCcccccccCCCC-----cHHHHHHHHHHcCC-----------------CEEEEEcCCcchHHHHH-
Q 009804 204 IALTPKGVNDIHKRGGTVLGTSRGGH-----DTSKIVDSIQDRGI-----------------NQVYIIGGDGTQKGASV- 260 (525)
Q Consensus 204 i~Lt~~~v~~i~~~GGtiLGSsR~~~-----d~~~iv~~l~~~~I-----------------d~L~vIGGdgS~~~A~~- 260 (525)
-.|+++.+..+...-||-.|--=.++ -.+.+++.|.+-|| |++|-.|||||+--|.-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 56888888877666665443211111 24667777777765 78999999999876653
Q ss_pred HHHHHHHcCCceeEEEe
Q 009804 261 IYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 261 L~e~~~~~g~~i~VIgI 277 (525)
+.+ -..+||||
T Consensus 125 v~~------~~~PViGv 135 (395)
T KOG4180|consen 125 VID------DSKPVIGV 135 (395)
T ss_pred hhc------cCCceeee
Confidence 432 24689997
No 229
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=36.67 E-value=71 Score=34.11 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHcCCC---EEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+.+.++| .++.|||--.++.|..++-.. .+| +++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl 120 (355)
T cd08197 68 STLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL 120 (355)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc
Confidence 3578999999999999 999999999999988776432 245 5789999985
No 230
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.56 E-value=4e+02 Score=25.67 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=62.5
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC-CCCcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR-GGHDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR-~~~d~~~i 234 (525)
||++...-.-|-...++.++...+.+ +|. ++. +-++. ......++
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~~~ 47 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYR-AGL-RVI--------------------------------LCNTDEDPEKEAMY 47 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCHHHHHHH
Confidence 56666544456677788888777754 442 221 11111 12334567
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-C--CCCCCc--hhhHHHHHHhhhcCCccEEE
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-N--DIPVPL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-N--DI~gtD--~sG~IAl~aaLAs~~ad~iL 309 (525)
++.+...++|++++.+-+.... . + +..+.++ +||.+=..++ + +..++| .+|..|+..-+..|.=++++
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~-~--~--~~~~~~i--PvV~~~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~g~~~i~~ 120 (263)
T cd06280 48 LELMEEERVTGVIFAPTRATLR-R--L--AELRLSF--PVVLIDRAGPAGRVDAVVLDNRAAARTLVEHLVAQGYRRIGG 120 (263)
T ss_pred HHHHHhCCCCEEEEeCCCCCch-H--H--HHHhcCC--CEEEECCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEE
Confidence 8889999999999988653322 1 1 2233454 4555432222 1 222344 77777766555554445554
Q ss_pred c
Q 009804 310 I 310 (525)
Q Consensus 310 I 310 (525)
+
T Consensus 121 ~ 121 (263)
T cd06280 121 L 121 (263)
T ss_pred E
Confidence 4
No 231
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.27 E-value=4.3e+02 Score=28.66 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHH---HHHHHHHHHHc---CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcC-
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKG---ASVIYEEVRRR---GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASR- 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~---A~~L~e~~~~~---g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~- 303 (525)
.+.|.+.+++++-+.++|+..--+-.. ...+.++++++ ...++||.++- .+..++-..||-++.-+|...
T Consensus 70 ~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~t---pgf~g~~~~G~~~a~~al~~~~ 146 (428)
T cd01965 70 IEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYAST---PSFKGSHETGYDNAVKAIIEQL 146 (428)
T ss_pred HHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeC---CCCCCcHHHHHHHHHHHHHHHH
Confidence 345555667789999998874433322 22233444432 23456666543 334444477887776666531
Q ss_pred --------CccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEec-------------------CCCCcchhHHhhh
Q 009804 304 --------DVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAE-------------------GAGQDLLAESIRS 356 (525)
Q Consensus 304 --------~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAE-------------------Ga~~~~~~~~~~~ 356 (525)
.-.+-||++.+.+.. =++.|++.+++-|.-++++-. |..- +.+.
T Consensus 147 ~~~~~~~~~~~VNlig~~~~~~~----d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~----e~i~- 217 (428)
T cd01965 147 AKPSEVKKNGKVNLLPGFPLTPG----DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTL----EEIR- 217 (428)
T ss_pred hcccCCCCCCeEEEECCCCCCcc----CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcH----HHHH-
Confidence 123677776665422 136677778777766666542 2221 1111
Q ss_pred hccccccCCccchh-HHHHHHHHHHHHhCC
Q 009804 357 ATQQDASGNKLLQD-VGLWLSQKIKDHFAK 385 (525)
Q Consensus 357 ~~~~DasGn~~L~d-ig~~La~~Ik~~~~~ 385 (525)
.-.++.=|..++. .+..+++.++++|+.
T Consensus 218 -~~~~A~lniv~~~~~~~~~a~~L~e~~Gi 246 (428)
T cd01965 218 -DAGNAKATIALGEYSGRKAAKALEEKFGV 246 (428)
T ss_pred -HhccCcEEEEEChhhhHHHHHHHHHHHCC
Confidence 1134555666666 788899999998873
No 232
>PRK09701 D-allose transporter subunit; Provisional
Probab=35.90 E-value=4.8e+02 Score=26.40 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=69.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+||++...=.-|-...++.++.+.+.. +|. ++.- +. + .+.....+..+.
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~-~g~-~v~~---------------~~-----------~---~~~~~~~~~~~~ 74 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKT-LGV-SVDI---------------FA-----------S---PSEGDFQSQLQL 74 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHH-cCC-eEEE---------------ec-----------C---CCCCCHHHHHHH
Confidence 788888665678888888888877754 442 2210 00 0 001111234577
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC-----------CCCCc--hhhHHHHHHhhh
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND-----------IPVPL--LTWFIAMYATLA 301 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND-----------I~gtD--~sG~IAl~aaLA 301 (525)
++.+...++|++++.+.+..... ..+ +++.+.|++ ||.+=..++.| .-++| .+|..|+..-+.
T Consensus 75 i~~l~~~~vDgiIi~~~~~~~~~-~~l-~~~~~~giP--vV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~ 150 (311)
T PRK09701 75 FEDLSNKNYKGIAFAPLSSVNLV-MPV-ARAWKKGIY--LVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIID 150 (311)
T ss_pred HHHHHHcCCCEEEEeCCChHHHH-HHH-HHHHHCCCc--EEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHH
Confidence 88888999999999987743222 223 334456755 44442222211 12334 788888877766
Q ss_pred c-CC--ccEEEc
Q 009804 302 S-RD--VDCCLI 310 (525)
Q Consensus 302 s-~~--ad~iLI 310 (525)
. +. -++.++
T Consensus 151 ~~g~~~~~i~~l 162 (311)
T PRK09701 151 KLGAEGGEVAII 162 (311)
T ss_pred HhCCCCCEEEEE
Confidence 4 32 467766
No 233
>PRK04155 chaperone protein HchA; Provisional
Probab=35.58 E-value=3.1e+02 Score=28.66 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=29.7
Q ss_pred HHHHHHHHH--HcCCCEEEEEcCCcchHH------HHHHHHHHHHcCCceeEE
Q 009804 231 TSKIVDSIQ--DRGINQVYIIGGDGTQKG------ASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 231 ~~~iv~~l~--~~~Id~L~vIGGdgS~~~------A~~L~e~~~~~g~~i~VI 275 (525)
.+++++... ....++||+-||-|.+.. +.+|.+++.+.+-.|..|
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 555555545 568899999999988664 455566666666444333
No 234
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=35.43 E-value=79 Score=32.99 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEE
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VI 275 (525)
++++.++.|.+ .+|.++||||-.| ....+|++-+++.+.+.-.|
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~I 241 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHI 241 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEe
Confidence 46777777755 6999999999999 45577999998887654333
No 235
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=35.30 E-value=3.3e+02 Score=26.18 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=64.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
|||+...-.-|=...+++++...+.+ +|. +++-... . +.....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~~~--------------------------------~---~~~~~~ 44 (261)
T cd06272 2 IGLIWPSVSRVALTELVTGINQAISK-NGY-NMNVSIT--------------------------------P---SLAEAE 44 (261)
T ss_pred EEEEecCCCchhHHHHHHHHHHHHHH-cCC-EEEEEec--------------------------------c---cHHHHH
Confidence 67777655667777888888877754 452 3321110 0 122345
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCC--CCCc--hhhHHHHHHhhhcCCccEEEc
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDI--PVPL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI--~gtD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
+.+...++|++++.+.+.... .+ +.+.+.++++-+++-+.. .++ -++| .+|..++.--++.+.-.+.++
T Consensus 45 ~~l~~~~vdgii~~~~~~~~~---~~-~~~~~~~ipvV~~~~~~~--~~~~~V~~d~~~~~~~~~~~l~~~g~~~i~~i 117 (261)
T cd06272 45 DLFKENRFDGVIIFGESASDV---EY-LYKIKLAIPVVSYGVDYD--LKYPIVNVDNEKAMELAVLYLAEKGHKKIAYI 117 (261)
T ss_pred HHHHHcCcCEEEEeCCCCChH---HH-HHHHHcCCCEEEEcccCC--CCCCEEEEChHHHHHHHHHHHHHcCchhEEEe
Confidence 668889999999998654322 12 334455755433333211 222 2344 788888777776655566665
No 236
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.76 E-value=1.8e+02 Score=29.85 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=42.7
Q ss_pred ccccCcccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEE
Q 009804 214 IHKRGGTVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAG 276 (525)
Q Consensus 214 i~~~GGtiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIg 276 (525)
+...|+++..+.+. ..|+...+..+++.+-+.+|+.+... .+..+.+.+++.|+++++++
T Consensus 162 ~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 162 LAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 34567776665554 35788999999999999999887432 33346677778898877665
No 237
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=34.00 E-value=86 Score=30.56 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. .++++++=|---.+| ....+.+.+++..++++..||+++
T Consensus 145 rv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~s 195 (225)
T PRK10247 145 RISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVT 195 (225)
T ss_pred HHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3788899998 799999966544444 334455555544444566777776
No 238
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=33.58 E-value=2e+02 Score=28.89 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCe-EeCChhhhhcccccCcccccccCCC---CcHHHHHHHHHHc
Q 009804 166 PGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNT-IALTPKGVNDIHKRGGTVLGTSRGG---HDTSKIVDSIQDR 241 (525)
Q Consensus 166 PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~-i~Lt~~~v~~i~~~GGtiLGSsR~~---~d~~~iv~~l~~~ 241 (525)
|.-....+.+++.+.. .|..+|.-+.. +..+ ...-....+.+...|+++....... .++...+..+++.
T Consensus 118 ~~~~~~~~~~~~~l~~-~g~~~v~~l~~------~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~ 190 (336)
T cd06326 118 ASYADEIAAIVRHLVT-LGLKRIAVFYQ------DDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA 190 (336)
T ss_pred CChHHHHHHHHHHHHH-hCCceEEEEEe------cCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc
Confidence 4445566777777654 56556654422 1111 0111112333456676665554433 4778888888888
Q ss_pred CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 242 GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 242 ~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+.+++|+.+-+. .+..+.+.+++.|++++++++-.
T Consensus 191 ~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~~~ 225 (336)
T cd06326 191 RPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNLSF 225 (336)
T ss_pred CCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEEec
Confidence 999888766332 23345567778899888777543
No 239
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=33.36 E-value=83 Score=37.53 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHH
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYE 263 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e 263 (525)
..+++++.+++.++|.++-|||--.++.|..++-
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia~ 560 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMWL 560 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 3678899999999999999999999999988863
No 240
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=33.30 E-value=1.6e+02 Score=28.68 Aligned_cols=90 Identities=18% Similarity=0.340 Sum_probs=59.1
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccC---------CeEeCChhhhhcccccCcccccccCC-
Q 009804 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAK---------NTIALTPKGVNDIHKRGGTVLGTSRG- 227 (525)
Q Consensus 158 IvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~---------~~i~Lt~~~v~~i~~~GGtiLGSsR~- 227 (525)
++.+||+-+-.... ..++. ....++++-.|..=+++. ++=.++++..+.+...|-.+.-..+.
T Consensus 2 ~Ii~~g~~~~~~~~-----~~~~~--~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~K 74 (208)
T cd07995 2 LILLGGPLPDSPLL-----LKLWK--KADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEK 74 (208)
T ss_pred EEEECCcCCcchhH-----HHhhc--cCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCC
Confidence 56678877733332 22222 224789999999777653 34455666666565443334433332
Q ss_pred -CCcHHHHHHHHHHcCCCEEEEEcCCcc
Q 009804 228 -GHDTSKIVDSIQDRGINQVYIIGGDGT 254 (525)
Q Consensus 228 -~~d~~~iv~~l~~~~Id~L~vIGGdgS 254 (525)
.-|.+++++.+.+++.+-++++|+-|.
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 247999999999999999999999886
No 241
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=33.28 E-value=4.9e+02 Score=25.73 Aligned_cols=119 Identities=14% Similarity=0.044 Sum_probs=65.9
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||++...-..+=...++.++.+.+.. +|. +++- .-+....+.-.
T Consensus 35 ~~~ig~v~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 81 (309)
T PRK11041 35 SRTILVIVPDICDPFFSEIIRGIEVTAAE-HGY-LVLI-------------------------------GDCAHQNQQEK 81 (309)
T ss_pred CcEEEEEeCCCcCccHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCCCChHHHH
Confidence 35889888766667777788888777764 442 3321 00111122345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCC--CCCc--hhhHHHHHHhhhcCCccE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDI--PVPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI--~gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
.+++.+...++|++++.+-+....... +. ..+. .+||-+=...+ -++ -++| .+|..|+..-+..|.-++
T Consensus 82 ~~i~~l~~~~vDgiIi~~~~~~~~~~~----~~-~~~~-~pvv~~~~~~~~~~~~~V~~Dn~~~g~~a~~~l~~~G~~~I 155 (309)
T PRK11041 82 TFVNLIITKQIDGMLLLGSRLPFDASK----EE-QRNL-PPMVMANEFAPELELPTVHIDNLTAAFEAVNYLHELGHKRI 155 (309)
T ss_pred HHHHHHHHcCCCEEEEecCCCChHHHH----HH-HhcC-CCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHcCCceE
Confidence 778888999999999998654333111 11 1232 12332211110 012 2234 788888776666655677
Q ss_pred EEc
Q 009804 308 CLI 310 (525)
Q Consensus 308 iLI 310 (525)
++|
T Consensus 156 ~~l 158 (309)
T PRK11041 156 ACI 158 (309)
T ss_pred EEE
Confidence 766
No 242
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.08 E-value=1.6e+02 Score=29.46 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=40.9
Q ss_pred ccCcccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 216 KRGGTVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 216 ~~GGtiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
..|++++.+.+. ..++...+..+++.+.+.+++.+..+. +..+.+.+++.|+++++++.
T Consensus 162 ~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~---~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 162 KLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTE---VGLIAKQARELGIKVPILGG 223 (334)
T ss_pred HcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhh---HHHHHHHHHHcCCCCcEEec
Confidence 456677665443 357889999999999999888765543 34455667777887666653
No 243
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=33.01 E-value=64 Score=31.01 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.+++.+.|+||+-||.|+...+..-.+.+++..-+++|.||-
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC 79 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVC 79 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEEC
Confidence 4456778999999999998755222112222222246788884
No 244
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=32.96 E-value=67 Score=29.07 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VI 275 (525)
.+.+.+.+++++||.+++-=-+........+.+++++.++++.+|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 667888899999999999988888888889999999888765543
No 245
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=32.95 E-value=3.8e+02 Score=24.34 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCceeEEEeeccccCCCCCCc--hhhHHHHHHhhhcCCccEEEcCCCC-CCccchhhHHHHHHHHHHcC
Q 009804 258 ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--LTWFIAMYATLASRDVDCCLIPESP-FYLEGHGGLFEYIETRLKEN 334 (525)
Q Consensus 258 A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--~sG~IAl~aaLAs~~ad~iLIPE~p-f~leg~~~lle~I~~rl~~~ 334 (525)
-..|.+++.++|+. ++.+ =.|+.+.|+. .-||-.+...+..+.+|++++-+.. +.-+ ..+++..++ .+.++
T Consensus 24 ~~~l~~~a~~~g~~--i~~~--~~D~~~SG~~~~Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~-~~d~~~~~~-~l~~~ 97 (140)
T cd03770 24 KAILEEYAKENGLE--NIRH--YIDDGFSGTTFDRPGFNRMIEDIEAGKIDIVIVKDMSRLGRN-YLKVGLYME-ILFPK 97 (140)
T ss_pred HHHHHHHHHHCCCE--EEEE--EEcCCCcCCcCCCHHHHHHHHHHHcCCCCEEEEeccchhccC-HHHHHHHHH-HHHhh
Confidence 34455667777864 4432 2355566654 7899998888888889999997743 2211 223444444 44444
Q ss_pred -CcEEEEEecCC
Q 009804 335 -GHMVIVIAEGA 345 (525)
Q Consensus 335 -g~~VIVVAEGa 345 (525)
|-.++++.||.
T Consensus 98 ~gv~l~~~~~~~ 109 (140)
T cd03770 98 KGVRFIAINDGV 109 (140)
T ss_pred cCcEEEEecCCc
Confidence 77888888874
No 246
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=32.77 E-value=2.7e+02 Score=25.28 Aligned_cols=88 Identities=18% Similarity=0.416 Sum_probs=56.0
Q ss_pred eEEEEEccchhhhccC-C---------eEeCChhhhhcccccCcccccccCCC--CcHHHHHHHHHHcCCCEEEEEcCCc
Q 009804 186 KRVLGIDGGYRGFYAK-N---------TIALTPKGVNDIHKRGGTVLGTSRGG--HDTSKIVDSIQDRGINQVYIIGGDG 253 (525)
Q Consensus 186 ~~V~Gi~~G~~GL~~~-~---------~i~Lt~~~v~~i~~~GGtiLGSsR~~--~d~~~iv~~l~~~~Id~L~vIGGdg 253 (525)
.-++++-.|..=+++. . +=.++++..+.+...|-.++-.. .+ -|++++++.+.+++.+-++++|+-|
T Consensus 17 ~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~~~~i~v~Ga~G 95 (123)
T PF04263_consen 17 DFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQGPDEIIVLGALG 95 (123)
T ss_dssp SEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTTTSEEEEES-SS
T ss_pred CEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCCCCEEEEEecCC
Confidence 3567888887766655 3 33466656666666665555554 32 4799999999999999999999987
Q ss_pred c-----hHHHHHHHHHHHHcCCceeEE
Q 009804 254 T-----QKGASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 254 S-----~~~A~~L~e~~~~~g~~i~VI 275 (525)
. +...+.|.++ .+++.+|.++
T Consensus 96 gR~DH~lanl~~l~~~-~~~~~~i~li 121 (123)
T PF04263_consen 96 GRFDHTLANLNLLYKY-KKRGIKIVLI 121 (123)
T ss_dssp SSHHHHHHHHHHHHHH-HTTTSEEEEE
T ss_pred CcHHHHHHHHHHHHHH-HHcCCeEEEE
Confidence 4 4444445444 3456655443
No 247
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=32.55 E-value=1.2e+02 Score=31.03 Aligned_cols=88 Identities=16% Similarity=0.269 Sum_probs=58.5
Q ss_pred eCChhhhhcccccCcccccccCCC-CcHHHHHHHHHHcCCCEEEEE----cCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 205 ALTPKGVNDIHKRGGTVLGTSRGG-HDTSKIVDSIQDRGINQVYII----GGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 205 ~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~~iv~~l~~~~Id~L~vI----GGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+++++.+-......|.+-.||--. .++.++.+.+.+.+-+.+++| |=-||+..|...++.+ .+.+|.|+
T Consensus 41 ~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi---- 114 (280)
T PF02645_consen 41 DISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI---- 114 (280)
T ss_dssp TSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE----
T ss_pred CCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE----
Confidence 778888777776667666777643 578888888888999988888 5678999999888876 34455554
Q ss_pred cccCCCCCCchhhHHHHHHhhh
Q 009804 280 TIDNDIPVPLLTWFIAMYATLA 301 (525)
Q Consensus 280 TIDNDI~gtD~sG~IAl~aaLA 301 (525)
|.-.. .---||+++.++-.
T Consensus 115 --DS~~~-s~g~g~lv~~a~~l 133 (280)
T PF02645_consen 115 --DSKSV-SAGQGLLVLEAAKL 133 (280)
T ss_dssp --E-SS--HHHHHHHHHHHHHH
T ss_pred --eCCCc-chhhhHHHHHHHHH
Confidence 21111 00557888766643
No 248
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=32.38 E-value=5e+02 Score=26.65 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLI 310 (525)
...++...++.+.+.++.-||-.+..++ .|+-.++++|+++ +|.+|.+.+.....-+..+-+.+.-+ - +++++++
T Consensus 40 ~~~~l~~a~~~g~~~vv~~ggs~GN~g~-alA~~a~~~G~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~--~-Ga~v~~~ 114 (307)
T cd06449 40 LEYLLPDALAKGADTLVTVGGIQSNHTR-QVAAVAAKLGLKC-VLVQENWVPYSDAVYDRVGNILLSRI--M-GADVRLV 114 (307)
T ss_pred HHHHHHHHHHcCCCEEEECCCchhHHHH-HHHHHHHHcCCeE-EEEecCCCCcccccccccccHHHHHH--C-CCEEEEE
Confidence 3456666778899999998775444443 3566778889984 67799877632111111233443332 3 6889988
Q ss_pred CCC
Q 009804 311 PES 313 (525)
Q Consensus 311 PE~ 313 (525)
++.
T Consensus 115 ~~~ 117 (307)
T cd06449 115 SAG 117 (307)
T ss_pred CCc
Confidence 864
No 249
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=32.13 E-value=96 Score=29.72 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCC--ccEEEcCCC--CCCccchhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRD--VDCCLIPES--PFYLEGHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~--ad~iLIPE~--pf~leg~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-+++..+|+. + ++++|+=|- .+|.+....+.+.|++. .+.+.+||+++
T Consensus 95 rl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvIivS 146 (176)
T cd03238 95 RVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIE 146 (176)
T ss_pred HHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEe
Confidence 4677788887 7 999999544 44444344555655544 33567777655
No 250
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=32.13 E-value=75 Score=32.51 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=39.3
Q ss_pred ccCCC--CcHHHHHHHHHHcCCCEEEEEcCCcch----------HHHHHHHHHHHHc--CCceeEEEeec
Q 009804 224 TSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQ----------KGASVIYEEVRRR--GLKVVVAGIPK 279 (525)
Q Consensus 224 SsR~~--~d~~~iv~~l~~~~Id~L~vIGGdgS~----------~~A~~L~e~~~~~--g~~i~VIgIPK 279 (525)
|+|.. ..++..+..+.+.||+.+++++||-.- ..|..|-+.+++. .+.|-+++.|-
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 44542 457788888999999999999999872 3366666666554 45566666664
No 251
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=31.96 E-value=1.7e+02 Score=29.25 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=40.8
Q ss_pred ccCcccccccCCC---CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 216 KRGGTVLGTSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 216 ~~GGtiLGSsR~~---~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
..|.++.++-+.. .|+...+..+++.+.+.+++.|. +. .+..+.+.+++.|++..+++.
T Consensus 161 ~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~-~~--~~~~~~~~~~~~g~~~~~~~~ 222 (334)
T cd06342 161 AAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGY-YP--EAGPLVRQMRQLGLKAPFMGG 222 (334)
T ss_pred HcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCc-ch--hHHHHHHHHHHcCCCCcEEec
Confidence 3566666665443 57889999999999998876653 32 233466777788887766654
No 252
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=31.84 E-value=98 Score=30.21 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. +++++++=|-.-.+| ....+.+.|++..++++.+||+++
T Consensus 137 rv~laral~~-~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~s 187 (232)
T PRK10771 137 RVALARCLVR-EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS 187 (232)
T ss_pred HHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4778888988 799999966544444 344566666655444567777765
No 253
>PLN02204 diacylglycerol kinase
Probab=31.82 E-value=47 Score=38.22 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=24.6
Q ss_pred cccccCCCCcHHHHHHH---HHHcCCCEEEEEcCCcchHHHH
Q 009804 221 VLGTSRGGHDTSKIVDS---IQDRGINQVYIIGGDGTQKGAS 259 (525)
Q Consensus 221 iLGSsR~~~d~~~iv~~---l~~~~Id~L~vIGGdgS~~~A~ 259 (525)
++-|.|.++-. .+++. +...+.|++|++|||||+..+.
T Consensus 195 v~~T~~aghA~-d~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 195 VIVTERAGHAF-DVMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred EEEecCcchHH-HHHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 44566654333 23332 3356789999999999987654
No 254
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=31.80 E-value=77 Score=35.36 Aligned_cols=51 Identities=10% Similarity=0.253 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+++.++..|-+..+|.++||||--|-.+.+ |++.++++|.+.--|-=|.=|
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT~~-L~eIa~~~g~~sy~Ie~~~eI 400 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNTSH-LQEIAEHKGIPSYWIDSEERI 400 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccHHH-HHHHHHHhCCCEEEECCHHHc
Confidence 467777777666799999999999987755 778888777654444334333
No 255
>CHL00101 trpG anthranilate synthase component 2
Probab=31.79 E-value=61 Score=31.16 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=25.3
Q ss_pred HHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 237 SIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 237 ~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
.+.+.+.|+|++.||.|+........+.++....+++|.||-
T Consensus 38 ~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIC 79 (190)
T CHL00101 38 KIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVC 79 (190)
T ss_pred HHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEc
Confidence 345678999999999998765322111111112346678873
No 256
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=31.64 E-value=1.4e+02 Score=30.57 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCEEEEEc-----CCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 233 KIVDSIQDRGINQVYIIG-----GDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIG-----GdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
++++..-.+|.|-.|.|- |-+++.+|..|++.+++.++++-+.| =.|+|.|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G-~~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCG-DGSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEc-CccccCCCC
Confidence 667777788999888884 56899999999999999888886666 467777655
No 257
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=31.56 E-value=2.2e+02 Score=28.73 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=41.0
Q ss_pred ccccCcccccccCCC---CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEE
Q 009804 214 IHKRGGTVLGTSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAG 276 (525)
Q Consensus 214 i~~~GGtiLGSsR~~---~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIg 276 (525)
+...|+.+.+..+.. .|+...+..+++.+-|.+|+.+... .+..+.+.+++.|++.++++
T Consensus 161 ~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 161 FEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 345566666655543 5788999999999999998875433 33445566667788766664
No 258
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=31.51 E-value=4.8e+02 Score=26.01 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=39.0
Q ss_pred ChhhhhcccccCcccccccCCC----------CcHHHHHHHHHHcCCCEEEEEcC---CcchHHHHHHHHHHHHcCCcee
Q 009804 207 TPKGVNDIHKRGGTVLGTSRGG----------HDTSKIVDSIQDRGINQVYIIGG---DGTQKGASVIYEEVRRRGLKVV 273 (525)
Q Consensus 207 t~~~v~~i~~~GGtiLGSsR~~----------~d~~~iv~~l~~~~Id~L~vIGG---dgS~~~A~~L~e~~~~~g~~i~ 273 (525)
+++..+.|...||.+| |.+. ..+.+++..|- +++|+++. .||+.+|..- .++| -.
T Consensus 116 n~~l~~~i~~~gglli--Se~p~~~~~~~~~f~~RNriia~ls----~~vivve~~~~sGtl~ta~~A----~~~g--r~ 183 (220)
T TIGR00732 116 NSKLAAKIAENGGLLL--SEYPPDTKPIKYNFPKRNRIISGLS----RAVLVVEAPLKSGALITARYA----LEQG--RE 183 (220)
T ss_pred hHHHHHHHHHcCCEEE--EecCCCCCCCcccHHHHHHHHHHhc----CEEEEEECCCCCchHHHHHHH----HHhC--Cc
Confidence 4445566666787555 2221 13455555543 67888886 4676665533 3446 36
Q ss_pred EEEeeccccC
Q 009804 274 VAGIPKTIDN 283 (525)
Q Consensus 274 VIgIPKTIDN 283 (525)
|.++|..|++
T Consensus 184 v~~~pg~~~~ 193 (220)
T TIGR00732 184 VFAYPGDLNS 193 (220)
T ss_pred EEEEcCCCCC
Confidence 8889998885
No 259
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=31.24 E-value=1.4e+02 Score=29.86 Aligned_cols=94 Identities=16% Similarity=0.316 Sum_probs=58.9
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchh------hh--ccCCeEeCCh--hhhhcc----cccCc
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYR------GF--YAKNTIALTP--KGVNDI----HKRGG 219 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~------GL--~~~~~i~Lt~--~~v~~i----~~~GG 219 (525)
+||||+-.-|-+. ..+...+.. .| ++|.+|-.--. |+ ++.++.+++. +++.+. ...|+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~~-RG-HeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEALK-RG-HEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHHh-CC-CeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 4789988777665 444555543 34 79999876543 33 3566777777 555542 11222
Q ss_pred ccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHH
Q 009804 220 TVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKG 257 (525)
Q Consensus 220 tiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~ 257 (525)
.. +.-. ....+.+++.|+.-+..-|+|+||-||+.-
T Consensus 73 ~~--~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 73 GA--SDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred CC--CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 10 0000 012566888899999999999999999753
No 260
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=31.09 E-value=1.1e+02 Score=30.00 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 294 IAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 294 IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
++++.+|+. +++++++=|---.+| ....+.+.|++..++++..||+++
T Consensus 154 l~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 154 VAIARALVN-NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 778888888 899999977544444 344555555544334567777765
No 261
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=31.07 E-value=1.7e+02 Score=29.08 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHH-HHHHHHHHHc--CCceeEEEeeccccC----CC---CCCchhhHHHHHHhh
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGA-SVIYEEVRRR--GLKVVVAGIPKTIDN----DI---PVPLLTWFIAMYATL 300 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A-~~L~e~~~~~--g~~i~VIgIPKTIDN----DI---~gtD~sG~IAl~aaL 300 (525)
+..+++.|.++|+..+++|-|-|.+..+ ...++++.++ ++.+.++......+- .. ....|+|..=....|
T Consensus 88 l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~HAg~~ETS~~l 167 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVINWWQLAEDEGAAGEDFETGGGHAGEFETSLML 167 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEEEGGGCSHCHHHCTCCCCGCCSBSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEeechhccchhhccccccCCCCCCCCHHHHHHHH
Confidence 6889999999999999999999887744 4455666655 544444433322211 11 111299998777777
Q ss_pred hc
Q 009804 301 AS 302 (525)
Q Consensus 301 As 302 (525)
+-
T Consensus 168 al 169 (237)
T PF02633_consen 168 AL 169 (237)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 262
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=30.89 E-value=2.5e+02 Score=26.77 Aligned_cols=49 Identities=27% Similarity=0.491 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
.+....+..+++.+.+.+++.+..+ .+..+.+.+++.|+++++++...+
T Consensus 177 ~~~~~~~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~ 225 (298)
T cd06268 177 TDFSPLIAKLKAAGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGGDGA 225 (298)
T ss_pred ccHHHHHHHHHhcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEecCcc
Confidence 4678888888888889888876542 334455667777887777765443
No 263
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=30.76 E-value=5.2e+02 Score=27.16 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHH---HHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC---
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASV---IYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD--- 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~---L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~--- 304 (525)
.+.+.+.+++++=+.++++++--+-..... ++++++++ ..++|+.+.- +...+.-..||-++..+++..-
T Consensus 69 ~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~~-~~~~vv~~~~---~gf~~~~~~G~~~a~~~~~~~~~~~ 144 (399)
T cd00316 69 LEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASKE-IGIPVVPAST---PGFRGSQSAGYDAAVKAIIDHLVGT 144 (399)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHHh-hCCceEEeeC---CCCcccHHHHHHHHHHHHHHHHhcc
Confidence 677888888888899999886544433222 22232221 2345554443 3333444778888877776421
Q ss_pred --------ccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEE-ecCCCCcchhHHhhhhccccccCCccchh-HHHH
Q 009804 305 --------VDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVI-AEGAGQDLLAESIRSATQQDASGNKLLQD-VGLW 374 (525)
Q Consensus 305 --------ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVV-AEGa~~~~~~~~~~~~~~~DasGn~~L~d-ig~~ 374 (525)
-.+.||.+.+... +-++.|++.+++-|.-|+.+ ..|..-+-+. .-.++.-|..+.. .+..
T Consensus 145 ~~~~~~~~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~------~~~~A~~nlv~~~~~g~~ 214 (399)
T cd00316 145 AEPEETEPGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNALFDGGTTVEELR------ELGNAKLNLVLCRESGLY 214 (399)
T ss_pred cCcCCCCCCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEEEcCCCCCHHHHH------hhccCcEEEEecHhHHHH
Confidence 1266777776543 13456777777767655544 4445421111 1235666777765 7889
Q ss_pred HHHHHHHHhC
Q 009804 375 LSQKIKDHFA 384 (525)
Q Consensus 375 La~~Ik~~~~ 384 (525)
+++.++++++
T Consensus 215 ~a~~l~~~~g 224 (399)
T cd00316 215 LARYLEEKYG 224 (399)
T ss_pred HHHHHHHHhC
Confidence 9999998876
No 264
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=30.69 E-value=1.2e+02 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHc--CCCEEEEEcCCcchHH-HHHHHHHHHHcCCceeE
Q 009804 230 DTSKIVDSIQDR--GINQVYIIGGDGTQKG-ASVIYEEVRRRGLKVVV 274 (525)
Q Consensus 230 d~~~iv~~l~~~--~Id~L~vIGGdgS~~~-A~~L~e~~~~~g~~i~V 274 (525)
+.+++++.+++. .+.++.+-||+ -+.. ...|.++++++|+++.+
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEE
Confidence 455666666665 57899999999 5533 56788888888876543
No 265
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=30.48 E-value=69 Score=35.30 Aligned_cols=50 Identities=26% Similarity=0.446 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN 283 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN 283 (525)
.++.++.+.... |.+||.|||||....- .-.+++|+-..+|--+|.--||
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~~ 155 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYDN 155 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHhh--HHHHhcccccCceeeccCccch
Confidence 556666666655 9999999999987643 3345566655666667765443
No 266
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.39 E-value=5.5e+02 Score=26.75 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHH-----HHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGA-----SVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A-----~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+.++++.+.+.|+++||+.|.-|=.... .++.+...+. +-+++|| -.|..|+.. .+=-+|-++. .. +
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpvi--aG~g~~~t~---eai~lak~a~-~~-G 99 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVI--AGVGSNSTA---EAIELAKHAE-KL-G 99 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEE--EecCCCcHH---HHHHHHHHHH-hc-C
Confidence 6788999999999999999987744321 2233333222 2234333 455555543 4445554444 22 5
Q ss_pred ccEEE-cCCCCCCccchhhHHHHHHHHHHcCCcEEEEE
Q 009804 305 VDCCL-IPESPFYLEGHGGLFEYIETRLKENGHMVIVI 341 (525)
Q Consensus 305 ad~iL-IPE~pf~leg~~~lle~I~~rl~~~g~~VIVV 341 (525)
+|.++ +|-.-+... ++++.+|.+...+.-+.-||+=
T Consensus 100 ad~il~v~PyY~k~~-~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 100 ADGILVVPPYYNKPS-QEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred CCEEEEeCCCCcCCC-hHHHHHHHHHHHHhcCCCEEEE
Confidence 77544 443322222 5688888887766655555553
No 267
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.33 E-value=2.4e+02 Score=27.09 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc--CCCCC--Cc--hhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID--NDIPV--PL--LTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID--NDI~g--tD--~sG~IAl~aaLAs~~ 304 (525)
.+.+.+.+...++|++++...+... .+.+++.++|++ ||.+=...+ ++++. +| .+|..|+.--+..+.
T Consensus 49 ~~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~~ip--vV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~ 122 (270)
T cd06294 49 LEEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEEKFP--FVVIGKPEDDKENITYVDNDNIQAGYDATEYLIKLGH 122 (270)
T ss_pred HHHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhcCCC--EEEECCCCCCCCCCCeEEECcHHHHHHHHHHHHHcCC
Confidence 3445555677789999998754431 223445556754 554422221 22332 23 777777665555555
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-.++++-
T Consensus 123 ~~i~~i~ 129 (270)
T cd06294 123 KKIAFVG 129 (270)
T ss_pred ccEEEec
Confidence 6677663
No 268
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=30.00 E-value=1e+02 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEec
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIAE 343 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVAE 343 (525)
-++++.+|+. +++++|+=|---.|| ....+++.|++..++.+..||+++-
T Consensus 158 rv~laral~~-~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 158 RINIARALAV-KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred HHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 4788888988 899999966544444 3445666666544444777777764
No 269
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.92 E-value=83 Score=33.14 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID 282 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID 282 (525)
++++.+..|-+ .+|.++||||-.|-.+. +|++.+++.+.+.-.|-=++=||
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT~-kL~~i~~~~~~~t~~Ie~~~el~ 249 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNSN-RLREVAEEAGAPAYLIDDASEID 249 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccHH-HHHHHHHHHCCCEEEECChHHCc
Confidence 46777777765 69999999999998774 47888888776555554454444
No 270
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.77 E-value=1.9e+02 Score=28.55 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=36.1
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc--CCCCC--Cc--hhhHHHHHHhhhcCCccEEEc
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID--NDIPV--PL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID--NDI~g--tD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
++.+++|++|+++.+..-. ..+.+.+.+++ +|.+=...+ .+++. +| .+|..|+.--+..|.-++.+|
T Consensus 52 l~~~~vdgiIi~~~~~~~~----~~~~l~~~~iP--vV~i~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i 124 (269)
T cd06287 52 LDALDIDGAILVEPMADDP----QVARLRQRGIP--VVSIGRPPGDRTDVPYVDLQSAATARMLLEHLRAQGARQIALI 124 (269)
T ss_pred hhccCcCeEEEecCCCCCH----HHHHHHHcCCC--EEEeCCCCCCCCCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEE
Confidence 4567889888887554321 22334444544 444422221 22222 33 677777766666555566666
No 271
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=29.60 E-value=5.6e+02 Score=25.74 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CC---CCCc--hhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DI---PVPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI---~gtD--~sG~IAl~aaLAs~~ 304 (525)
..++++.+...++|++++.+-+... .....+++++.++ +||.+=..++. +. -.+| .+|..++.--+..++
T Consensus 43 q~~~i~~l~~~~vDgIIi~~~~~~~--~~~~l~~~~~~~i--PvV~~d~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~g~ 118 (302)
T TIGR02634 43 QISQIENLIARGVDVLVIIPQNGQV--LSNAVQEAKDEGI--KVVAYDRLINDADIDFYLSFDNEKVGEMQARAVLEAAP 118 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhH--HHHHHHHHHHCCC--eEEEecCcCCCCCccEEEecCHHHHHHHHHHHHHhhCC
Confidence 4578999999999999998765431 2233355556664 56654222221 11 1234 778877765555543
Q ss_pred c-cEEEcC
Q 009804 305 V-DCCLIP 311 (525)
Q Consensus 305 a-d~iLIP 311 (525)
- .++++.
T Consensus 119 ~~~i~~i~ 126 (302)
T TIGR02634 119 KGNYFLMG 126 (302)
T ss_pred CCCEEEEe
Confidence 3 566654
No 272
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=29.53 E-value=60 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
..|.+.+++.+++++|| |+|||-+.-+.. =|++.++++|+ +|+|=.
T Consensus 48 ~~d~~~l~~~a~~~~id-lvvvGPE~pL~~--Gl~D~l~~~gi--~vfGP~ 93 (100)
T PF02844_consen 48 ITDPEELADFAKENKID-LVVVGPEAPLVA--GLADALRAAGI--PVFGPS 93 (100)
T ss_dssp TT-HHHHHHHHHHTTES-EEEESSHHHHHT--THHHHHHHTT---CEES--
T ss_pred CCCHHHHHHHHHHcCCC-EEEECChHHHHH--HHHHHHHHCCC--cEECcC
Confidence 36799999999999999 677888776653 47788888884 577643
No 273
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.49 E-value=6.7e+02 Score=26.15 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcC--CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc----------------------------
Q 009804 231 TSKIVDSIQDRG--INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT---------------------------- 280 (525)
Q Consensus 231 ~~~iv~~l~~~~--Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT---------------------------- 280 (525)
+++..+.|+..+ .=.-|+.+||.+..+..++.+.+.+.|.++==+|||=+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHH
Confidence 455566666554 44456778887777777777777777776666676632
Q ss_pred ------------------ccCCCCCCchhhHHHHHHhhhcCCccEEEcCCCCCCcc
Q 009804 281 ------------------IDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLE 318 (525)
Q Consensus 281 ------------------IDNDI~gtD~sG~IAl~aaLAs~~ad~iLIPE~pf~le 318 (525)
--|-+. +-|.-....-++.-++|-+|||..|++..
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~---~~Gie~F~~~~~~~GvdGlivpDLP~ee~ 136 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIF---NYGIEKFLRRAKEAGVDGLLVPDLPPEES 136 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHH---HhhHHHHHHHHHHcCCCEEEeCCCChHHH
Confidence 111110 55665544444444899999999998755
No 274
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=29.47 E-value=2.4e+02 Score=28.90 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=42.7
Q ss_pred cCcccccccCC---C-CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 217 RGGTVLGTSRG---G-HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 217 ~GGtiLGSsR~---~-~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
.|+++.+..+. . .|+...+..+++.+.|.+++++..+ .+..+.+.+++.|+++++++.
T Consensus 172 ~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 233 (342)
T cd06329 172 PDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTP 233 (342)
T ss_pred CCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEec
Confidence 67777776554 2 5788889999999999998877443 234566778888988777654
No 275
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.47 E-value=2.4e+02 Score=30.94 Aligned_cols=132 Identities=18% Similarity=0.253 Sum_probs=80.0
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhc-----------------cCCeEeCChhhhhcc-----
Q 009804 157 CIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFY-----------------AKNTIALTPKGVNDI----- 214 (525)
Q Consensus 157 aIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~-----------------~~~~i~Lt~~~v~~i----- 214 (525)
.|+++.|-.|||.-+|+++++. | ..|+--.-=|.=|+ ++.-..++.+.++.-
T Consensus 85 ~i~~~p~VVpgi~~~I~~~T~~-----g-d~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~ 158 (388)
T COG1168 85 WIVFVPGVVPGISLAIRALTKP-----G-DGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER 158 (388)
T ss_pred eEEEcCcchHhHHHHHHHhCcC-----C-CeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC
Confidence 4888999999999999999642 2 23332221122221 222344455544432
Q ss_pred ---------cccCcccccccCCCCcHHHHHHHHHHcCCCEE-------EEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 215 ---------HKRGGTVLGTSRGGHDTSKIVDSIQDRGINQV-------YIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 215 ---------~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L-------~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
||.+|++ =+.+++.++.+-+++||+--+ ++.+|+ ++..+..|.+.++.+ .+.+.-
T Consensus 159 vkl~iLCnPHNP~Grv----wt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~~----~it~~s 229 (388)
T COG1168 159 VKLFILCNPHNPTGRV----WTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFADN----SITLTS 229 (388)
T ss_pred ccEEEEeCCCCCCCcc----ccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhhcc----eEEEee
Confidence 4555522 234679999999999986443 678887 677777787776432 233333
Q ss_pred ccccCCCCCCc----------------------------hhhHHHHHHhhhcC
Q 009804 279 KTIDNDIPVPL----------------------------LTWFIAMYATLASR 303 (525)
Q Consensus 279 KTIDNDI~gtD----------------------------~sG~IAl~aaLAs~ 303 (525)
.|=--+++|.. .-|.+|..+|...|
T Consensus 230 aSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G 282 (388)
T COG1168 230 ASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG 282 (388)
T ss_pred ccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Confidence 33334566544 66888888887764
No 276
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=29.30 E-value=2.3e+02 Score=29.76 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=44.5
Q ss_pred hhcccccCcccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 211 VNDIHKRGGTVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 211 v~~i~~~GGtiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
.+.+...|+.+.+..+. ..|+...+..+++.+-|.+|+ +|.+. ..+. +.+.+++.|++.++++.
T Consensus 182 ~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~-~~~~~-~~~~-~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 182 KDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY-GGYHP-EMGQ-ILRQAREAGLKTQFMGP 248 (369)
T ss_pred HHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-CCCch-HHHH-HHHHHHHCCCCCeEEec
Confidence 34456678877776554 368999999999999998775 44443 2333 55777788988777643
No 277
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=29.19 E-value=6.6e+02 Score=28.24 Aligned_cols=145 Identities=14% Similarity=0.036 Sum_probs=76.8
Q ss_pred cHHHHHHHH-HHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcC-----
Q 009804 230 DTSKIVDSI-QDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASR----- 303 (525)
Q Consensus 230 d~~~iv~~l-~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~----- 303 (525)
.+.+.++.+ ++++-+.++|+.+--+-.-...+...+++.+..++||.|.. ++..+..+.||-.+..+|...
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~sTC~seiIGdDi~~v~~~~~~~~~Vi~v~t---~gf~~~~~~G~~~al~~lv~~~~~~~ 148 (519)
T PRK02910 72 LLKDTLRRADERFQPDLIVVGPSCTAELLQEDLGGLAKHAGLPIPVLPLEL---NAYRVKENWAADETFYQLVRALAKKA 148 (519)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhCCCCCEEEEec---CCcccccchHHHHHHHHHHHHHhhhc
Confidence 455555544 56789988888755444333333333333344455555543 233333356664443333211
Q ss_pred ---------CccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEE-ecCCCCcchhHHhhhhccccccCCccch-hHH
Q 009804 304 ---------DVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVI-AEGAGQDLLAESIRSATQQDASGNKLLQ-DVG 372 (525)
Q Consensus 304 ---------~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVV-AEGa~~~~~~~~~~~~~~~DasGn~~L~-dig 372 (525)
...+-||.+.+.....+.++ ..|++.++.-|--|+++ ..|+.-+-+. .-.++.-|..+. ..+
T Consensus 149 ~~~~~~~~~~~~VNIiG~~~l~f~~~~D~-~EikrlL~~~Gi~vn~v~p~g~s~~di~------~l~~A~~nivl~~~~g 221 (519)
T PRK02910 149 AELPQPKTARPSVNLLGPTALGFHHRDDL-TELRRLLATLGIDVNVVAPLGASPADLK------RLPAAWFNVVLYREIG 221 (519)
T ss_pred ccccccCCCCCeEEEEecCccCCCChhHH-HHHHHHHHHcCCeEEEEeCCCCCHHHHH------hcccCcEEEEeCHHHH
Confidence 12367777755322212233 45787888777666554 5666521111 113455566544 467
Q ss_pred HHHHHHHHHHhC
Q 009804 373 LWLSQKIKDHFA 384 (525)
Q Consensus 373 ~~La~~Ik~~~~ 384 (525)
..+++.++++|+
T Consensus 222 ~~~A~~Lee~fG 233 (519)
T PRK02910 222 ESAARYLEREFG 233 (519)
T ss_pred HHHHHHHHHHhC
Confidence 888999988886
No 278
>PRK06851 hypothetical protein; Provisional
Probab=28.82 E-value=1.9e+02 Score=31.30 Aligned_cols=63 Identities=29% Similarity=0.456 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHcCCCE-EEEEcCCcchHH--HHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCcc
Q 009804 230 DTSKIVDSIQDRGINQ-VYIIGGDGTQKG--ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVD 306 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~-L~vIGGdgS~~~--A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad 306 (525)
.+---++++- .+++. +++-|+-|+-++ +.++++++.++|+.+.+.++| .|+| ..|
T Consensus 201 G~~s~~~~l~-~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~--~dPd-------------------slD 258 (367)
T PRK06851 201 GAVDFVPSLT-EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG--FDPD-------------------SLD 258 (367)
T ss_pred cHHhhHHhHh-cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC--CCCC-------------------Ccc
Confidence 3444555555 34444 667787777644 677889999999886666554 7776 467
Q ss_pred EEEcCCCC
Q 009804 307 CCLIPESP 314 (525)
Q Consensus 307 ~iLIPE~p 314 (525)
.|+|||-.
T Consensus 259 ~viIPel~ 266 (367)
T PRK06851 259 MVIIPELN 266 (367)
T ss_pred eEEeccCC
Confidence 77777754
No 279
>PRK12377 putative replication protein; Provisional
Probab=28.54 E-value=6.4e+02 Score=25.63 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHH--HHHHHHHHHHcCCceeEEEeeccccCCCCCCchhh--HHHHHHhhhcCCccEE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKG--ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTW--FIAMYATLASRDVDCC 308 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~--A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG--~IAl~aaLAs~~ad~i 308 (525)
+.++.+.. +...|++.|.-||=++ |..|++++.+.|..+.++.+|.-++ ++..+-..+ .-...-.|. .+|++
T Consensus 92 ~~a~~~~~-~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~-~l~~~~~~~~~~~~~l~~l~--~~dLL 167 (248)
T PRK12377 92 SIADELMT-GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS-RLHESYDNGQSGEKFLQELC--KVDLL 167 (248)
T ss_pred HHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH-HHHHHHhccchHHHHHHHhc--CCCEE
Confidence 34445543 4578999998888776 7778888888887765555554222 111000001 111223333 59999
Q ss_pred EcCCCCC---CccchhhHHHHHHHHHHcCCcEEE
Q 009804 309 LIPESPF---YLEGHGGLFEYIETRLKENGHMVI 339 (525)
Q Consensus 309 LIPE~pf---~leg~~~lle~I~~rl~~~g~~VI 339 (525)
+|=|... +-.....|++.|..|+..+.-.||
T Consensus 168 iIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptii 201 (248)
T PRK12377 168 VLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGM 201 (248)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9888732 212233566777888876444444
No 280
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=28.45 E-value=62 Score=30.98 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhh
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATL 300 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaL 300 (525)
+.+++++.++||+-||-++-.........+++...+++|.||- -|+=.+..++
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC------------~G~Qlla~~~ 89 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVC------------LGHQALGQAF 89 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEEC------------HHHHHHHHHh
Confidence 3356678999999999988654322222222222346788884 3666665554
No 281
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=28.30 E-value=7.1e+02 Score=26.06 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLI 310 (525)
...++...++.++..++.-||-.+..+ ..++-.+++.|+++. |.+|+.++=+-+.....+-+++.-++ +++++++
T Consensus 54 ~~~~l~~a~~~G~~~vvs~ggs~gN~g-~alA~~a~~~Gl~~~-iv~~~~~~~~~~~~~~~~~~~~~~~~---GA~v~~v 128 (337)
T TIGR01274 54 LEYLIPDAQAQGCTTLVSIGGIQSNQT-RQVAAVAAHLGMKCV-LVQENWVNYSDAVYDRVGNIQLSRIM---GADVRLD 128 (337)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcchHH-HHHHHHHHHcCCcEE-EEeccCCCccccchhccchHHHHHHc---CCEEEEe
Confidence 456777778899999998888765555 347778888999865 55787653111111123455554443 7889988
Q ss_pred CCC
Q 009804 311 PES 313 (525)
Q Consensus 311 PE~ 313 (525)
|+.
T Consensus 129 ~~~ 131 (337)
T TIGR01274 129 PDG 131 (337)
T ss_pred CCc
Confidence 864
No 282
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=28.28 E-value=2.7e+02 Score=26.56 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCC--ceeEEEe
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGL--KVVVAGI 277 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~--~i~VIgI 277 (525)
.++..+++.+++.+.+.+++.+.. ..+..+.+.+++.|+ ++.+++.
T Consensus 178 ~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 178 TDFTSLLQKLKAAKPDVIVLCGSG---EDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred ccHHHHHHHHHhcCCCEEEEcccc---hHHHHHHHHHHHcCCCCCCcEEec
Confidence 467888888888888888776653 344556667777787 5666654
No 283
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.27 E-value=1.1e+02 Score=33.50 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
.++++.+..|-+..+|.++||||--|-.+ .+|++.+++.+.+.-.|-=+.=|
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSSNT-~rL~eia~~~g~~ty~Ie~~~eL 326 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSSNT-THLQEIAIERGIPSYHIDSPERI 326 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHhcCCCEEEECCHHHc
Confidence 46788888887778999999999998776 45888888777554444333333
No 284
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=28.24 E-value=6.3e+02 Score=25.92 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHH-----HHHHHHHHHHc-CCceeE-EEeeccccCCCCCCchhhHHHHHHhhhcC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKG-----ASVIYEEVRRR-GLKVVV-AGIPKTIDNDIPVPLLTWFIAMYATLASR 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~-----A~~L~e~~~~~-g~~i~V-IgIPKTIDNDI~gtD~sG~IAl~aaLAs~ 303 (525)
+++.++.+.+.|+++|++.|..|-+.. =.++.+...+. +-+++| +|+- . .|+.+=-+|-++. +.
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~---~----~t~~~i~~a~~a~-~~- 93 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG---Y----GTATAIAYAQAAE-KA- 93 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC---C----CHHHHHHHHHHHH-Hh-
Confidence 678888888899999999987664322 12233333222 112333 3332 1 2333323333322 23
Q ss_pred CccEEEc-CCCCCCccchhhHHHHHHHHHHcCCcEEEEEe
Q 009804 304 DVDCCLI-PESPFYLEGHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 304 ~ad~iLI-PE~pf~leg~~~lle~I~~rl~~~g~~VIVVA 342 (525)
++|.+++ |-.-+.+ .++++.++.++..+.-+--|++=.
T Consensus 94 Gad~v~~~pP~y~~~-~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 94 GADGILLLPPYLTEA-PQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CCCEEEECCCCCCCC-CHHHHHHHHHHHHhcCCCCEEEEe
Confidence 6775444 4332333 256788877776655445555544
No 285
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=27.94 E-value=4.3e+02 Score=23.46 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCceeEEEeeccccCCCCCCc--hhhHHHHHHhhhcCCccEEEcCCCC-CCccchhhHHHHHHHHHHcC
Q 009804 258 ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--LTWFIAMYATLASRDVDCCLIPESP-FYLEGHGGLFEYIETRLKEN 334 (525)
Q Consensus 258 A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--~sG~IAl~aaLAs~~ad~iLIPE~p-f~leg~~~lle~I~~rl~~~ 334 (525)
...+.+++.++|+. ++.+ =.|+.+.++. .-+|-.+...+..+.+|.+++.+.. +.-+ ..++... .+.++.+
T Consensus 21 ~~~~~~~a~~~g~~--i~~~--~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~-~~~~~~~-~~~l~~~ 94 (148)
T smart00857 21 LEALRAYAKANGWE--VVRI--YEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRS-LRDLLAL-LELLEKK 94 (148)
T ss_pred HHHHHHHHHHCCCE--EEEE--EEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCc-HHHHHHH-HHHHHHC
Confidence 34566777777865 3332 2456666654 7899998888888889999999864 3222 2234343 3456667
Q ss_pred CcEEEEEecCC
Q 009804 335 GHMVIVIAEGA 345 (525)
Q Consensus 335 g~~VIVVAEGa 345 (525)
|--|+++.||.
T Consensus 95 gi~l~~~~~~~ 105 (148)
T smart00857 95 GVRLVSVTEGI 105 (148)
T ss_pred CCEEEECcCCC
Confidence 77788888886
No 286
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=27.07 E-value=1.4e+02 Score=31.87 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.++.+.+++.+.|.++.+||=+ +.- .++..+++.|+++ |+.||
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~-~~~--~~a~aa~~~gip~-v~~i~ 121 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD-FNL--TKELKKKDPGIKI-IYYIS 121 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC-ccH--HHHHHHhhCCCCE-EEEeC
Confidence 56888899999999999999833 221 2323334457654 34444
No 287
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.01 E-value=5.1e+02 Score=24.78 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=79.8
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTSKI 234 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~~i 234 (525)
|||+.....-|-...+.+++-..+.. ++. ++.- ++.+... +...+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~-~g~-~~~~-------------------------------~~~~~~d~~~q~~~ 47 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKE-LGY-EVEI-------------------------------VFDAQNDPEEQIEQ 47 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EEESTTTHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHH-cCC-EEEE-------------------------------eCCCCCCHHHHHHH
Confidence 67888777888777788888777765 563 2221 1111221 345678
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC-CCCCc----------hhhHHHHHHhhhcC
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND-IPVPL----------LTWFIAMYATLASR 303 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND-I~gtD----------~sG~IAl~aaLAs~ 303 (525)
++++...++|++++..-+.+... .+.+.+++.|+ +||. +|+| .+..+ ..|..++...+...
T Consensus 48 i~~~i~~~~d~Iiv~~~~~~~~~--~~l~~~~~~gI--pvv~----~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~ 119 (257)
T PF13407_consen 48 IEQAISQGVDGIIVSPVDPDSLA--PFLEKAKAAGI--PVVT----VDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKL 119 (257)
T ss_dssp HHHHHHTTESEEEEESSSTTTTH--HHHHHHHHTTS--EEEE----ESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEecCCCHHHHH--HHHHHHhhcCc--eEEE----EeccccccccceeeeeccHHHHHHHHHHHHHHHh
Confidence 88888999999999988875443 33456677785 5664 6666 22222 66666654443321
Q ss_pred C--ccEEEcCCCCCCccchhhHHHHHHHHHHcCC
Q 009804 304 D--VDCCLIPESPFYLEGHGGLFEYIETRLKENG 335 (525)
Q Consensus 304 ~--ad~iLIPE~pf~leg~~~lle~I~~rl~~~g 335 (525)
+ ..++++-..+=... .....+-+++.+++.+
T Consensus 120 ~~~~~v~~~~~~~~~~~-~~~r~~g~~~~l~~~~ 152 (257)
T PF13407_consen 120 GAKGKVLILSGSPGNPN-TQERLEGFRDALKEYP 152 (257)
T ss_dssp TTTEEEEEEESSTTSHH-HHHHHHHHHHHHHHCT
T ss_pred ccCceEEeccCCCCchH-HHHHHHHHHHHHhhcc
Confidence 2 45666633332211 1133455555666643
No 288
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.90 E-value=7.6e+02 Score=26.88 Aligned_cols=140 Identities=13% Similarity=0.145 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCEEEEEc-------CCcchHHHHHHHHHHHHc---CCceeEEEeeccccCCCCCCchhhHHHHHHhhh
Q 009804 232 SKIVDSIQDRGINQVYIIG-------GDGTQKGASVIYEEVRRR---GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLA 301 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIG-------GdgS~~~A~~L~e~~~~~---g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLA 301 (525)
+.|.+..++++-+.++|+. |||-..-+.. ++++ ...++||.|+- -+..+.-..||-++..+|.
T Consensus 71 ~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~----~~~~~p~~~~~~vi~v~t---~gf~g~~~~G~~~a~~al~ 143 (417)
T cd01966 71 EALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQ----FRAEHPELADVPVVYVST---PDFEGSLEDGWAAAVEAII 143 (417)
T ss_pred HHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHH----HHhhccccCCCeEEEecC---CCCCCcHHHHHHHHHHHHH
Confidence 4455555678999888877 4453333333 3333 12466777654 3444444889988776765
Q ss_pred cC---C--------ccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCC----------------CCcchhHHh
Q 009804 302 SR---D--------VDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGA----------------GQDLLAESI 354 (525)
Q Consensus 302 s~---~--------ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa----------------~~~~~~~~~ 354 (525)
.. . -.+=||++...+ +.+ ++.|++.+++-|.-++++..-. +..-+ +++
T Consensus 144 ~~l~~~~~~~~~~~~~VNiig~~~~~---~~D-~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~l-eei 218 (417)
T cd01966 144 EALVEPGSRTVTDPRQVNLLPGAHLT---PGD-VEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTL-EDI 218 (417)
T ss_pred HHhcccccccCCCCCcEEEECCCCCC---HHH-HHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCCCcH-HHH
Confidence 21 1 125667766432 223 4668888888787777764310 00001 111
Q ss_pred hhhccccccCCccchhHHHHHHHHHHHHhCC
Q 009804 355 RSATQQDASGNKLLQDVGLWLSQKIKDHFAK 385 (525)
Q Consensus 355 ~~~~~~DasGn~~L~dig~~La~~Ik~~~~~ 385 (525)
. ..-+|.-|..++..+..+++.++++|+.
T Consensus 219 ~--~~~~A~lniv~~~~~~~~a~~Lee~~Gi 247 (417)
T cd01966 219 R--QMGRSAATLAIGESMRKAAEALEERTGV 247 (417)
T ss_pred H--hhccCeEEEEECHHHHHHHHHHHHHHCC
Confidence 1 1235666777777777889999998873
No 289
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.87 E-value=96 Score=32.38 Aligned_cols=51 Identities=8% Similarity=0.232 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID 282 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID 282 (525)
++++.+..|. ...|.++||||-.|-.+.. |++.+++.+.+.-.|-=|.=||
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT~r-L~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNTQK-LVKICEKNCPNTFHIETADELD 248 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccHHH-HHHHHHHHCCCEEEECChHHCC
Confidence 5778888884 4699999999999987754 7788887775544444444443
No 290
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=26.87 E-value=5.4e+02 Score=26.86 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhc---c-CC---eEeCChhhhhcccccCcccccccCCC-CcH-HHHH
Q 009804 165 CPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFY---A-KN---TIALTPKGVNDIHKRGGTVLGTSRGG-HDT-SKIV 235 (525)
Q Consensus 165 ~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~---~-~~---~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~-~~iv 235 (525)
.|.+..++..++..+.. + .+||.+=.|-.|.+ + .+ ...+.+..+..+...|-..+-++-.. ++. +...
T Consensus 41 ~~~I~~a~~~~~~~l~~--g-grl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~ 117 (296)
T PRK12570 41 LPQIAQAVDKIVAAFKK--G-GRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGA 117 (296)
T ss_pred HHHHHHHHHHHHHHHHc--C-CeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHH
Confidence 47788888888888753 4 58999999988864 2 11 22334444444444333344443332 343 3344
Q ss_pred HHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 236 DSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 236 ~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
+.|+.+++ |.+|+|-..|.-.......++++++|.+ +|+|=..
T Consensus 118 ~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~--~IaIT~~ 163 (296)
T PRK12570 118 QDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGAT--TIALSCN 163 (296)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCe--EEEEECC
Confidence 55666655 9999999999888888888999999854 5555443
No 291
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=26.81 E-value=3e+02 Score=26.89 Aligned_cols=73 Identities=7% Similarity=0.012 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc--CCCCC--Cc--hhhHHHHHHhhh--cC
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID--NDIPV--PL--LTWFIAMYATLA--SR 303 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID--NDI~g--tD--~sG~IAl~aaLA--s~ 303 (525)
+.+.+.+ .+++|++++++....-.. +...+++.+ ++||.+-.+.. ++++. +| .+|+.|+..-+. .|
T Consensus 43 ~~~~~~~-~~~vdGvIi~~~~~~~~~---~~~~~~~~~--~PvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~~~G 116 (247)
T cd06276 43 KNIISNT-KGKYSGYVVMPHFKNEIQ---YFLLKKIPK--EKLLILDHSIPEGGEYSSVAQDFEKAIYNALQEGLEKLKK 116 (247)
T ss_pred HHHHHHH-hcCCCEEEEecCCCCcHH---HHHHhccCC--CCEEEEcCcCCCCCCCCeEEEccHHHHHHHHHHHHHHhcC
Confidence 3455554 699999999986533221 222222234 45666665542 34443 44 889999888877 76
Q ss_pred CccEEEc
Q 009804 304 DVDCCLI 310 (525)
Q Consensus 304 ~ad~iLI 310 (525)
.-.+.+|
T Consensus 117 ~~~Ia~i 123 (247)
T cd06276 117 YKKLILV 123 (247)
T ss_pred CCEEEEE
Confidence 7777777
No 292
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=26.71 E-value=8.2e+02 Score=26.58 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHH---HHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhc----C-
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGAS---VIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLAS----R- 303 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~---~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs----~- 303 (525)
+.|.+..++++-+.++|+..--+-.-.. .+.+++++.+ ++||.|.. ++..+..+.||-++..+|.. .
T Consensus 76 ~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~--~~vi~v~t---~gf~g~~~~G~~~a~~al~~~~~~~~ 150 (427)
T cd01971 76 ELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQEGG--APIVYLET---GGFKGNNYAGHEIVLKAIIDQYVGQS 150 (427)
T ss_pred HHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhhcC--CCEEEEEC---CCcCcccccHHHHHHHHHHHHhccCC
Confidence 4555557778899999988655544432 2334443334 45565543 34555447888666555542 1
Q ss_pred ---Cc-cEEEcCCCCC-CccchhhHHHHHHHHHHcCCcEEEEE-ecCCCCcchhHHhhhhccccccCCccchhH-HHHHH
Q 009804 304 ---DV-DCCLIPESPF-YLEGHGGLFEYIETRLKENGHMVIVI-AEGAGQDLLAESIRSATQQDASGNKLLQDV-GLWLS 376 (525)
Q Consensus 304 ---~a-d~iLIPE~pf-~leg~~~lle~I~~rl~~~g~~VIVV-AEGa~~~~~~~~~~~~~~~DasGn~~L~di-g~~La 376 (525)
.. .+-||.+.+. +...+ +=++.|++.+++-|.-++++ ..+..- +.+. .-.++.-|..++.- +...+
T Consensus 151 ~~~~~~~VNiiG~~~~~~~~~~-~d~~elk~lL~~~Gl~v~~~~~~~~~~----~ei~--~~~~A~~niv~~~~~g~~~a 223 (427)
T cd01971 151 EEKEPGLVNLWGPVPYQDPFWR-GDLEEIKRVLEGIGLKVNILFGPESNG----EELR--SIPKAQFNLVLSPWVGLEFA 223 (427)
T ss_pred CCCCCCeEEEEeccCCcccccc-ccHHHHHHHHHHCCCeEEEEECCCCCH----HHHH--hcccCcEEEEEcHhhHHHHH
Confidence 11 1446665432 11001 22366788887777666444 554331 1111 12355666666654 77889
Q ss_pred HHHHHHhCC
Q 009804 377 QKIKDHFAK 385 (525)
Q Consensus 377 ~~Ik~~~~~ 385 (525)
+.++++|+.
T Consensus 224 ~~L~~~~gi 232 (427)
T cd01971 224 QHLEEKYGQ 232 (427)
T ss_pred HHHHHHhCC
Confidence 999998873
No 293
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=26.67 E-value=6.9e+02 Score=25.39 Aligned_cols=117 Identities=8% Similarity=-0.045 Sum_probs=65.0
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~ 232 (525)
..||++...-.-|-...++.++-..+.. +|. .++- ..+.. .....
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~-~gy-~~~~--------------------------------~~~~~~~~~~~ 105 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQ-HQK-YVLI--------------------------------GNSYHEAEKER 105 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHH-CCC-EEEE--------------------------------EcCCCChHHHH
Confidence 4788888765678888888888877754 442 2210 01111 12234
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC---CCCCCc--hhhHHHHHHhhhcCCccE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN---DIPVPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN---DI~gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
+.++.|..+++|++++.+..-.... +.+. .+ ..+ +||.+=..+++ +-..+| .+|+.|+.--+..|+-++
T Consensus 106 ~~i~~l~~~~vdGiIi~~~~~~~~~---~~~~-~~-~~p-~vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I 179 (346)
T PRK10401 106 HAIEVLIRQRCNALIVHSKALSDDE---LAQF-MD-QIP-GMVLINRVVPGYAHRCVCLDNVSGARMATRMLLNNGHQRI 179 (346)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChHH---HHHH-Hh-cCC-CEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHCCCCeE
Confidence 6777888899999999975432222 2222 22 222 24433222221 112234 778888766566656677
Q ss_pred EEc
Q 009804 308 CLI 310 (525)
Q Consensus 308 iLI 310 (525)
.+|
T Consensus 180 ~~i 182 (346)
T PRK10401 180 GYL 182 (346)
T ss_pred EEE
Confidence 666
No 294
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.66 E-value=5.6e+02 Score=26.65 Aligned_cols=104 Identities=17% Similarity=0.057 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHhc----CCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC---CcHHHHHHHH
Q 009804 166 PGLNTVIREIVYSLYYMY----GVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG---HDTSKIVDSI 238 (525)
Q Consensus 166 PGlN~vIr~lv~~l~~~~----g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~---~d~~~iv~~l 238 (525)
|......+.+++.+.... +..+|.-+..-+. +. ..+.....+.+...|+.+.+..+.. .|+...+..+
T Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~--~g---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i 191 (351)
T cd06334 117 PTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP--FG---KEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQI 191 (351)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc--cc---hhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHH
Confidence 334445566666554433 2456655543211 11 1111112233445677777776653 5789999999
Q ss_pred HHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 239 QDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 239 ~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
++.+-|.||+.+-.. .+..+.+.+++.|++..+++.
T Consensus 192 ~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~~ 227 (351)
T cd06334 192 RRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIGN 227 (351)
T ss_pred HHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEEe
Confidence 999999998765543 233455677778988777754
No 295
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.62 E-value=1.6e+02 Score=30.61 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=46.1
Q ss_pred ccccCcccccccCCC---CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 214 IHKRGGTVLGTSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 214 i~~~GGtiLGSsR~~---~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
+...|+.+.+..++. .|+...+..++..+-|.+|++ +.+. .+..+.+.+++.|++.+++++...
T Consensus 172 ~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~--~~~~~~~~~~~~G~~~~~~~~~~~ 238 (357)
T cd06337 172 LADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPP--DFATFWRQAAQAGFKPKIVTIAKA 238 (357)
T ss_pred HHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCcc--HHHHHHHHHHHCCCCCCeEEEecc
Confidence 445688888777753 589999999999999997655 4443 234466777788998888765443
No 296
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=26.55 E-value=6e+02 Score=24.61 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=63.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDTSK 233 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~~~ 233 (525)
+||++.. -..|-.+.++.++...+.+ +|. .+.- ..++.. .....+
T Consensus 1 ~i~~v~~-~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~~~ 46 (271)
T cd06314 1 TIAVVTN-GASPFWKIAEAGVKAAGKE-LGV-DVEF-------------------------------VVPQQGTVNAQLR 46 (271)
T ss_pred CeEEEcC-CCcHHHHHHHHHHHHHHHH-cCC-eEEE-------------------------------eCCCCCCHHHHHH
Confidence 3566653 3467888888888887764 452 2321 111221 223567
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc--CCC--CCCc--hhhHHHHHHhhhc--CCc
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID--NDI--PVPL--LTWFIAMYATLAS--RDV 305 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID--NDI--~gtD--~sG~IAl~aaLAs--~~a 305 (525)
.++.|...++|++++...+- .....+.+.+.+ ++ +||.+=...+ +.+ ..+| .+|..|+..-+.. ++-
T Consensus 47 ~i~~l~~~~vDgiIi~~~~~--~~~~~~l~~~~~-~i--pvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~g~ 121 (271)
T cd06314 47 MLEDLIAEGVDGIAISPIDP--KAVIPALNKAAA-GI--KLITTDSDAPDSGRYVYIGTDNYAAGRTAGEIMKKALPGGG 121 (271)
T ss_pred HHHHHHhcCCCEEEEecCCh--hHhHHHHHHHhc-CC--CEEEecCCCCccceeEEEccChHHHHHHHHHHHHHHcCCCC
Confidence 78889999999999998652 222233344444 54 4554421121 111 1344 7788887655442 234
Q ss_pred cEEEc
Q 009804 306 DCCLI 310 (525)
Q Consensus 306 d~iLI 310 (525)
+++++
T Consensus 122 ~~~~~ 126 (271)
T cd06314 122 KVAIF 126 (271)
T ss_pred EEEEE
Confidence 54443
No 297
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=26.30 E-value=4.5e+02 Score=23.19 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=29.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 246 VYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 246 L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
|+|-+|-+|---+.++.++.+++|+++.|-++|-++
T Consensus 8 lvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~ 43 (106)
T PRK10499 8 LFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL 43 (106)
T ss_pred EECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecch
Confidence 566677777777888989998999998888888655
No 298
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=26.01 E-value=1.1e+02 Score=29.45 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=31.7
Q ss_pred ccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 224 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 224 SsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
--|+++...+.++.-++.|+..+|-.-|- |..|--.... .-.++|||||--- -.+.|.|
T Consensus 39 AHRTPe~m~~ya~~a~~~g~~viIAgAGg-----AAHLPGmvAa-~T~lPViGVPv~s-~~L~GlD 97 (162)
T COG0041 39 AHRTPEKMFEYAEEAEERGVKVIIAGAGG-----AAHLPGMVAA-KTPLPVIGVPVQS-KALSGLD 97 (162)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEecCcc-----hhhcchhhhh-cCCCCeEeccCcc-ccccchH
Confidence 34666667777777788777754433332 2222222211 2257899999532 2345555
No 299
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=25.86 E-value=1.4e+02 Score=28.54 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=32.3
Q ss_pred hhHHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 291 TWFIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 291 sG~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
.=.++++.+|+. .++++++=|---.+| ....+.+.|++. ++++..||+++
T Consensus 143 ~qrl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~t 194 (214)
T TIGR02673 143 QQRVAIARAIVN-SPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVAT 194 (214)
T ss_pred HHHHHHHHHHhC-CCCEEEEeCCcccCCHHHHHHHHHHHHHH-HHcCCEEEEEe
Confidence 345888899998 799999966543444 344555666653 33466777665
No 300
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=25.59 E-value=1.2e+02 Score=31.27 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=52.2
Q ss_pred EEEEccchhhhccCCeEeCChhhhhcccccCc-c-cc-cccCCC--CcHHHHHHHHHHcCCCEEEEEcCCcc--------
Q 009804 188 VLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG-T-VL-GTSRGG--HDTSKIVDSIQDRGINQVYIIGGDGT-------- 254 (525)
Q Consensus 188 V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GG-t-iL-GSsR~~--~d~~~iv~~l~~~~Id~L~vIGGdgS-------- 254 (525)
-+-+.+|-.|- ..+-|-.....+.+.-| . +. =|+|.. ..++..+..+.+.||+.+++++||-.
T Consensus 32 fvsvT~~~~~~----~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~ 107 (281)
T TIGR00677 32 FIDITWGAGGT----TAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTE 107 (281)
T ss_pred EEEeccCCCCc----chhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Confidence 35555555442 22223334444444434 1 11 245553 45778888889999999999999983
Q ss_pred ----hHHHHHHHHHHHHc---CCceeEEEee
Q 009804 255 ----QKGASVIYEEVRRR---GLKVVVAGIP 278 (525)
Q Consensus 255 ----~~~A~~L~e~~~~~---g~~i~VIgIP 278 (525)
+..|..|-+.+++. .+.|-|.+-|
T Consensus 108 ~~~~f~~a~~Li~~i~~~~~~~f~igva~~P 138 (281)
T TIGR00677 108 VEGGFQYAVDLVKYIRSKYGDYFCIGVAGYP 138 (281)
T ss_pred CCCCCcCHHHHHHHHHHhCCCceEEEEEECC
Confidence 23466666766653 3567777777
No 301
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=24.99 E-value=8e+02 Score=25.55 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLI 310 (525)
...++...++.+.+.++.-||--+.. +..|+-.++..|+++ +|-+|.+++.-..-+.-.+-+.+.-++ +++++.+
T Consensus 52 ~~~~l~~a~~~g~~~vvt~g~s~gN~-g~alA~~a~~~G~~~-~i~vp~~~~~~~~~~~~~~~~~~~~~~---Ga~vi~~ 126 (331)
T PRK03910 52 LEFLLADALAQGADTLITAGAIQSNH-ARQTAAAAAKLGLKC-VLLLENPVPTEAENYLANGNVLLDDLF---GAEIHVV 126 (331)
T ss_pred HHHHHHHHHHcCCCEEEEcCcchhHH-HHHHHHHHHHhCCcE-EEEEcCCCCcccccccCCCcHHHHHHc---CCEEEEe
Confidence 44556666778889888766422222 334666677789985 566899877422100011223332222 6778887
Q ss_pred CCC
Q 009804 311 PES 313 (525)
Q Consensus 311 PE~ 313 (525)
+..
T Consensus 127 ~~~ 129 (331)
T PRK03910 127 PAG 129 (331)
T ss_pred Ccc
Confidence 754
No 302
>PRK08617 acetolactate synthase; Reviewed
Probab=24.78 E-value=1e+02 Score=34.44 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-hhhHHHHHHhhhcCCccEEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL-LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD-~sG~IAl~aaLAs~~ad~iL 309 (525)
.+.+++.|+++||+.+|.+=|+..+.-...|. +.+ |.+|.+. -| .+||.|..-+.+++.+-+|+
T Consensus 8 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~----~~~--i~~i~~~---------hE~~A~~~A~gyar~tg~~gv~~ 72 (552)
T PRK08617 8 ADLVVDSLINQGVKYVFGIPGAKIDRVFDALE----DSG--PELIVTR---------HEQNAAFMAAAIGRLTGKPGVVL 72 (552)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh----hCC--CCEEEec---------cHHHHHHHHHhHhhhcCCCEEEE
Confidence 57789999999999999999988776555542 234 3444332 11 67777776666665444444
Q ss_pred c
Q 009804 310 I 310 (525)
Q Consensus 310 I 310 (525)
+
T Consensus 73 v 73 (552)
T PRK08617 73 V 73 (552)
T ss_pred E
Confidence 3
No 303
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.77 E-value=6.4e+02 Score=25.49 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEE-EeeccccCCCCCCchhhHHHHHHhhhcCCccEEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVA-GIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VI-gIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iL 309 (525)
...+++.|+++|+.-+-++-=-- -.....+.+++++.|+.+..+ +.-.+-|.++.-++..-...+.-.+...++|.++
T Consensus 108 ~~A~~~AL~alg~~RIalvTPY~-~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAif 186 (239)
T TIGR02990 108 SSAAVDGLAALGVRRISLLTPYT-PETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALF 186 (239)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc-HHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEE
Confidence 57889999999999998886543 333456778888889875444 4466666667767744444444444445799999
Q ss_pred cCCCCCCccchhhHHHHHHHHH
Q 009804 310 IPESPFYLEGHGGLFEYIETRL 331 (525)
Q Consensus 310 IPE~pf~leg~~~lle~I~~rl 331 (525)
|+=-.+.-- ++++.+++++
T Consensus 187 isCTnLrt~---~vi~~lE~~l 205 (239)
T TIGR02990 187 LSCTALRAA---TCAQRIEQAI 205 (239)
T ss_pred EeCCCchhH---HHHHHHHHHH
Confidence 985544321 4666666655
No 304
>PLN02335 anthranilate synthase
Probab=24.71 E-value=1e+02 Score=30.67 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=28.0
Q ss_pred HHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 238 IQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+++++.+++|+-||-|+-.......+.+++.+-+++|.||-
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIC 98 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVC 98 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEec
Confidence 45578999999999998765433334444445557788874
No 305
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=24.68 E-value=1.9e+02 Score=26.97 Aligned_cols=39 Identities=21% Similarity=0.497 Sum_probs=31.6
Q ss_pred cHHHHHHHHHH-cCCCEEEEEcCCcchHHHHHHHHHHHHc
Q 009804 230 DTSKIVDSIQD-RGINQVYIIGGDGTQKGASVIYEEVRRR 268 (525)
Q Consensus 230 d~~~iv~~l~~-~~Id~L~vIGGdgS~~~A~~L~e~~~~~ 268 (525)
.++++++.+++ .+++.++++|=-||.-++..+.+.+.+.
T Consensus 6 ~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~ 45 (158)
T cd05015 6 RIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPY 45 (158)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhh
Confidence 35677888877 4899999999999999988887766543
No 306
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=24.65 E-value=1.5e+02 Score=29.78 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCCccEEEcCCCC--CCccchhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESP--FYLEGHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~p--f~leg~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. +++++|+=|-. .|.+....+++.|++..++.+..||+++
T Consensus 151 rv~laral~~-~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~t 201 (265)
T PRK10253 151 RAWIAMVLAQ-ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVL 201 (265)
T ss_pred HHHHHHHHhc-CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3778888888 79999995543 4444344556666554343467777766
No 307
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.43 E-value=3.6e+02 Score=33.18 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCChhh----HHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC
Q 009804 152 DEVYACIVTCGGLCPG----LNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG 227 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PG----lN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~ 227 (525)
.-.||.|+-+|+..-| ..-.-..+.+.|.. .| .+|+.+..-..... .+....+.... .
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e-~G-~~vi~v~~np~~~~------~d~~~ad~~y~----------e 67 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE-EG-YQVVLVNPNPATIM------TDPAPADTVYF----------E 67 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH-cC-CEEEEEeCCcchhh------cCcccCCeeEE----------C
Confidence 3468999988865432 12222334444443 56 58887753322111 00000000000 0
Q ss_pred CCcHHHHHHHHHHcCCCEEEE-EcCCcchHHHHHHHH--HHHHcCCceeEEEee
Q 009804 228 GHDTSKIVDSIQDRGINQVYI-IGGDGTQKGASVIYE--EVRRRGLKVVVAGIP 278 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~v-IGGdgS~~~A~~L~e--~~~~~g~~i~VIgIP 278 (525)
....+.+.+.++++++|+++. +||+..+..+..+++ .++++| +.++|.+
T Consensus 68 p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~g--v~l~g~~ 119 (1068)
T PRK12815 68 PLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYG--VELLGTN 119 (1068)
T ss_pred CCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCC--CEEECCC
Confidence 123577788899999999985 588877887777764 355556 4566543
No 308
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=24.20 E-value=1.1e+02 Score=31.40 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHcCCC---EEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 230 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 230 d~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
.+.++.+.|.+++++ .|+.+||--..+-+--.+..+ .|| |+.|-||-|+
T Consensus 14 ~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y-~RG--i~~i~vPTTL 65 (260)
T PF01761_consen 14 TVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTY-MRG--IPFIQVPTTL 65 (260)
T ss_dssp HHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHB-TT----EEEEEE-SH
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-ccC--CceEeccccH
Confidence 478999999999995 999999988777776665543 468 6799999995
No 309
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=24.20 E-value=1.3e+02 Score=26.52 Aligned_cols=41 Identities=15% Similarity=0.295 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcch----HHHHHHHHHHHHcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQ----KGASVIYEEVRRRGL 270 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~----~~A~~L~e~~~~~g~ 270 (525)
..+++++.++++++..+.+.||+-++ .....+.+++++++.
T Consensus 40 ~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 40 IIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFP 84 (139)
T ss_dssp HHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-
T ss_pred hhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCC
Confidence 36788888888999999999999998 667788888888776
No 310
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.03 E-value=2e+02 Score=29.36 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
.++.++.+++.|++++++- |-.......+.+.++++|++.-.+.-|.|
T Consensus 104 ~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3455555555555555555 44445555555555555555433444444
No 311
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=24.02 E-value=1.5e+02 Score=28.97 Aligned_cols=55 Identities=11% Similarity=0.294 Sum_probs=38.9
Q ss_pred cccCcccccccCCC-CcHHHHHHHHHH-cCCCEEEEEcCCcc-hHHHHHHHHHHHHcCC
Q 009804 215 HKRGGTVLGTSRGG-HDTSKIVDSIQD-RGINQVYIIGGDGT-QKGASVIYEEVRRRGL 270 (525)
Q Consensus 215 ~~~GGtiLGSsR~~-~d~~~iv~~l~~-~~Id~L~vIGGdgS-~~~A~~L~e~~~~~g~ 270 (525)
...|-.+.|++++. ..+++++.++-. -+|..|++.|-+=. +.+.+.|.. +.+.|+
T Consensus 38 l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~a-Lh~NGi 95 (176)
T PF04208_consen 38 LDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLA-LHENGI 95 (176)
T ss_pred hhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHH-HHHcCC
Confidence 33455799999985 579999988855 49999999998752 555555533 345665
No 312
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.01 E-value=1.9e+02 Score=29.59 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN 283 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN 283 (525)
..++.++.+++.|++++++. |=.+..+..+.+.++++|+..-...-|.|=+.
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~e 156 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDE 156 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 46788888899999998885 66777888888888888887555556666443
No 313
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.93 E-value=1.1e+02 Score=25.58 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=28.0
Q ss_pred cCcccccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHH
Q 009804 217 RGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 257 (525)
Q Consensus 217 ~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~ 257 (525)
.++.+|=+. ... ...+.+.|+++++..+++|||.++...
T Consensus 49 ~~~PIll~~-~~l-~~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 49 NNAPILLVN-NSL-PSSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred cCCeEEEEC-CCC-CHHHHHHHHHcCCCEEEEECCCCccCH
Confidence 344455555 322 377888889999999999999987653
No 314
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=23.86 E-value=1.9e+02 Score=27.96 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=68.5
Q ss_pred cccccccCCCCcHHHHHHHHHHcCCCEEE-EEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHH
Q 009804 219 GTVLGTSRGGHDTSKIVDSIQDRGINQVY-IIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMY 297 (525)
Q Consensus 219 GtiLGSsR~~~d~~~iv~~l~~~~Id~L~-vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~ 297 (525)
|-+.||.-..+-.+++++.|++++|.+-. |+----|-.-....+++.+++|+++-+.| -. --+.+| |.+|+.
T Consensus 6 ~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAg-AG-gAAHLP-----GmvAa~ 78 (162)
T COG0041 6 GIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAG-AG-GAAHLP-----GMVAAK 78 (162)
T ss_pred EEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEec-Cc-chhhcc-----hhhhhc
Confidence 44678766556678999999999999854 55555555556666666778898753332 22 144444 444433
Q ss_pred HhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCc--EEEEEecCCCCcchhH
Q 009804 298 ATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGH--MVIVIAEGAGQDLLAE 352 (525)
Q Consensus 298 aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~--~VIVVAEGa~~~~~~~ 352 (525)
. -.-++=+|=..-.|+|...|+.-++- -.|- +.+-+.|+....+++.
T Consensus 79 T-----~lPViGVPv~s~~L~GlDSL~SiVQM---P~GvPVaTvaIg~a~NAallAa 127 (162)
T COG0041 79 T-----PLPVIGVPVQSKALSGLDSLLSIVQM---PAGVPVATVAIGNAANAALLAA 127 (162)
T ss_pred C-----CCCeEeccCccccccchHHHHHHhcC---CCCCeeEEEeecchhhHHHHHH
Confidence 2 23355555444556665566654431 1344 4455555544445543
No 315
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.85 E-value=7e+02 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
...+++.+..++++++++...|... .....+++++.|++ ||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~giP--vV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKNIP--VIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCCCC--EEEe
Confidence 4577888999999999998876432 12233445555754 5543
No 316
>PRK12342 hypothetical protein; Provisional
Probab=23.85 E-value=2.7e+02 Score=28.65 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCEEEEE-----cCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 233 KIVDSIQDRGINQVYII-----GGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vI-----GGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
++.+..-.+|.|..|.| +|.+++.+|..|+..+++.++++-+.| =.|+|.|-.
T Consensus 68 ~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G-~~s~D~~tg 125 (254)
T PRK12342 68 KVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFG-EGSGDLYAQ 125 (254)
T ss_pred HHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEc-CCcccCCCC
Confidence 35466667899999988 467999999999999998888876666 567776654
No 317
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=23.75 E-value=1.8e+02 Score=26.91 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. +++++++=|---.+| ....+.+.+++. .+++..+|+++
T Consensus 90 rl~laral~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~s 139 (163)
T cd03216 90 MVEIARALAR-NARLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFIS 139 (163)
T ss_pred HHHHHHHHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEe
Confidence 4778888888 799999955543444 344555555543 33466777765
No 318
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=23.70 E-value=6.2e+02 Score=24.79 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEE-Ee--e-ccc--cCCCC--CCc--hhhHHHHHHhh
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVA-GI--P-KTI--DNDIP--VPL--LTWFIAMYATL 300 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VI-gI--P-KTI--DNDI~--gtD--~sG~IAl~aaL 300 (525)
..+.++.|...++|++++...+.+.. ...+.+.+.+.++-++ .. | +.. ++.+. ++| .+|..++..-+
T Consensus 49 ~~~~i~~l~~~~vDgiIv~~~~~~~~---~~~~~l~~~~~p~V~i~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~ 125 (280)
T cd06303 49 QSQQLNEALQSKPDYLIFTLDSLRHR---KLIERVLASGKTKIILQNITTPVKAWLKHQPLLYVGFDHAAGARLLADYFI 125 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcCCchhhH---HHHHHHHhCCCCeEEEeCCCCCccccccCCCceEeCCCHHHHHHHHHHHHH
Confidence 45677888999999999987654332 2223344445443222 11 1 011 11122 345 77888776555
Q ss_pred h--cCCccEEEc
Q 009804 301 A--SRDVDCCLI 310 (525)
Q Consensus 301 A--s~~ad~iLI 310 (525)
. .++-.+++|
T Consensus 126 ~~~~g~~~i~~l 137 (280)
T cd06303 126 KRYPNHARYAML 137 (280)
T ss_pred HhcCCCcEEEEE
Confidence 5 444566665
No 319
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=23.62 E-value=1.7e+02 Score=29.79 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=44.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
||||+.. +.-|.++++++++...|.. .|. .+ +.+++. +.+ +.+......++
T Consensus 1 ~v~i~~~-~~~~~~~~~~~gf~~~L~~-~g~-------------~~-~~~~~~------~~~-------a~~d~~~~~~~ 51 (294)
T PF04392_consen 1 KVGILQF-ISHPALDDIVRGFKDGLKE-LGY-------------DE-KNVEIE------YKN-------AEGDPEKLRQI 51 (294)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHHHH-TT---------------C-CCEEEE------EEE--------TT-HHHHHHH
T ss_pred CeEEEEE-eccHHHHHHHHHHHHHHHH-cCC-------------cc-ccEEEE------Eec-------CCCCHHHHHHH
Confidence 6888886 4789999999999999965 442 11 112111 111 11223457788
Q ss_pred HHHHHHcCCCEEEEEcCCcchH
Q 009804 235 VDSIQDRGINQVYIIGGDGTQK 256 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~ 256 (525)
++.|...+.|.++.+|.+-+..
T Consensus 52 ~~~l~~~~~DlIi~~gt~aa~~ 73 (294)
T PF04392_consen 52 ARKLKAQKPDLIIAIGTPAAQA 73 (294)
T ss_dssp HHHHCCTS-SEEEEESHHHHHH
T ss_pred HHHHhcCCCCEEEEeCcHHHHH
Confidence 8888899999888887665444
No 320
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=23.60 E-value=1.4e+02 Score=33.72 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHcC---CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 230 DTSKIVDSIQDRG---INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 230 d~~~iv~~l~~~~---Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
..+++++.+.+.+ .|.++.|||--.++.|..++..+ .+| +++|.||-|.
T Consensus 254 ~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl 305 (542)
T PRK14021 254 VANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL 305 (542)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH
Confidence 3567778888884 89999999999999998887533 357 5689999986
No 321
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=23.43 E-value=1.4e+02 Score=31.08 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=48.0
Q ss_pred EEEEEccchhhhccCCeEeCChhhhhccccc-Ccc--cc-cccCCC--CcHHHHHHHHHHcCCCEEEEEcCCcc------
Q 009804 187 RVLGIDGGYRGFYAKNTIALTPKGVNDIHKR-GGT--VL-GTSRGG--HDTSKIVDSIQDRGINQVYIIGGDGT------ 254 (525)
Q Consensus 187 ~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~-GGt--iL-GSsR~~--~d~~~iv~~l~~~~Id~L~vIGGdgS------ 254 (525)
.+..+..|=-|. ...+.|...+..++.. +|. +- =|||.. ..++.+++.+.++||..++.++||..
T Consensus 47 ~~~svt~~d~~~---~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~ 123 (291)
T COG0685 47 GFDSVTIPDGSR---GTPRRTSVAAAALLKRTGGIEPIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPG 123 (291)
T ss_pred ceEEEEecCCCC---CCCcccHHHHHHHHHhcCCCccceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCC
Confidence 344444433332 3445555555555433 342 11 255553 56899999999999999999999995
Q ss_pred --hHHHHHHHHHHHHc
Q 009804 255 --QKGASVIYEEVRRR 268 (525)
Q Consensus 255 --~~~A~~L~e~~~~~ 268 (525)
...+..|-+.+++.
T Consensus 124 ~~~~~s~dLv~lik~~ 139 (291)
T COG0685 124 GKDLYSVDLVELIKKM 139 (291)
T ss_pred ccccCHHHHHHHHHHh
Confidence 23345555555544
No 322
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=23.42 E-value=1.8e+02 Score=30.44 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEE
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VI 275 (525)
.++++.+..|-+ .+|.++||||--|-.+. +|++-+++.|.+.-.|
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT~-rL~ei~~~~~~~t~~I 240 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNTT-RLYEIAEEHGPPSYLI 240 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchHH-HHHHHHHHhCCCEEEE
Confidence 357777777765 59999999999998774 4888888777554333
No 323
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=23.29 E-value=1.5e+02 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=31.7
Q ss_pred HHHcCCCEEEEEcCCcchHH---HHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhh
Q 009804 238 IQDRGINQVYIIGGDGTQKG---ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLA 301 (525)
Q Consensus 238 l~~~~Id~L~vIGGdgS~~~---A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLA 301 (525)
+...++|+|++-||.++... ...+.+++.+++ ++|.||- -|+-.+..++.
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGIC------------~G~Q~l~~~~G 87 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGIC------------LGHQLLALALG 87 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEEC------------HHHHHHHHHcC
Confidence 34457999999999876433 334555555555 5678774 36666666554
No 324
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=23.09 E-value=8e+02 Score=24.88 Aligned_cols=119 Identities=7% Similarity=0.043 Sum_probs=64.7
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC-CCCcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR-GGHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR-~~~d~ 231 (525)
..+||++...-..|=...++.++-..+.. +|. .++ +..+. .....
T Consensus 59 ~~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~ 104 (343)
T PRK10727 59 TETVGLVVGDVSDPFFGAMVKAVEQVAYH-TGN-FLL--------------------------------IGNGYHNEQKE 104 (343)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHHH
Confidence 34788887544456677777788777653 442 221 10110 11223
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CC--CCCc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DI--PVPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI--~gtD--~sG~IAl~aaLAs~~ad 306 (525)
.+.++.|..+++|++++.+.+-.-.. +.+ +.+ +++ +||.+=...++ ++ ..+| .+|++|+..-+..|+-.
T Consensus 105 ~~~i~~l~~~~vdgiIi~~~~~~~~~---~~~-~~~-~~p-~vV~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~ 178 (343)
T PRK10727 105 RQAIEQLIRHRCAALVVHAKMIPDAE---LAS-LMK-QIP-GMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHTR 178 (343)
T ss_pred HHHHHHHHhcCCCEEEEecCCCChHH---HHH-HHh-cCC-CEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCcc
Confidence 45677888899999999976433222 222 222 433 13433222221 11 2344 78998887655555567
Q ss_pred EEEcC
Q 009804 307 CCLIP 311 (525)
Q Consensus 307 ~iLIP 311 (525)
+.+|-
T Consensus 179 I~~i~ 183 (343)
T PRK10727 179 IGYLC 183 (343)
T ss_pred EEEEe
Confidence 77763
No 325
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=23.07 E-value=5.4e+02 Score=26.74 Aligned_cols=108 Identities=14% Similarity=0.224 Sum_probs=65.4
Q ss_pred ccccccCCCC-----cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee--------ccccCCCC
Q 009804 220 TVLGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP--------KTIDNDIP 286 (525)
Q Consensus 220 tiLGSsR~~~-----d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP--------KTIDNDI~ 286 (525)
..+|.+|..+ ...++++.+++ ++.++=+-=+.|- .+ ...|..|+|- |-+|-|+.
T Consensus 144 ~~~G~gr~~e~~~~~~~~~~l~~ik~-~l~~v~val~~g~-----~~-------~~~i~~V~vcAgsg~svlk~~~adly 210 (272)
T KOG4131|consen 144 ETIGYGREEETKINLNVVEILKRIKR-GLSSVRVALAVGH-----TL-------ESQIKKVAVCAGSGSSVLKGVDADLY 210 (272)
T ss_pred ccccccceeeccCcccHHHHHHHHHh-cCCeEEEeeccCC-----cc-------ccceeEEEEeeccCcceeccccccEE
Confidence 3677888642 36677777776 8888877665553 11 1234555554 45777888
Q ss_pred CCchhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcC--CcEEEEEecCCC
Q 009804 287 VPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKEN--GHMVIVIAEGAG 346 (525)
Q Consensus 287 gtD~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~--g~~VIVVAEGa~ 346 (525)
.|-.-.+--.-.+.+. +..++|.--.. + +++|+.+++.+++.. ++ -|+|+|-..
T Consensus 211 ~TGEmSHH~vL~~~~~-g~sVilc~HSN-t---ERgfL~d~~~kl~~~l~~~-~v~vS~~D~ 266 (272)
T KOG4131|consen 211 ITGEMSHHDVLDAAAN-GISVILCEHSN-T---ERGFLSDLCDKLASSLEEE-EVIVSKMDK 266 (272)
T ss_pred EeccccHHHHHHHHHc-CCeEEEecCCC-c---cchhHHHHHHHHHhhCCcc-eEEEeecCC
Confidence 7763333333334455 67777754332 2 457888888887763 56 677787654
No 326
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=23.03 E-value=4.7e+02 Score=26.43 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=41.4
Q ss_pred cccCcccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 215 HKRGGTVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 215 ~~~GGtiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
...|+.+..+.+. ..|+...+..|++.+.+.+|+.+... .+..+.+.+++.|++..+++..-
T Consensus 166 ~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 166 EAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFP---DAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcch---hHHHHHHHHHHcCCCCCEEEEec
Confidence 3456666654443 25788899999999999888766554 23345566777888776765533
No 327
>PRK07064 hypothetical protein; Provisional
Probab=22.95 E-value=92 Score=34.64 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCc-hhhHHHHHHhhhcCCccEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPL-LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD-~sG~IAl~aaLAs~~ad~i 308 (525)
-+.+++.|+++||+.+|-+=|+-.+. |.+.+.+. + |.+|... -| .+||.|..-+.+++.+-+|
T Consensus 6 ~~~l~~~L~~~Gv~~vFgvpG~~~~~----l~~al~~~~~--i~~i~~~---------hE~~A~~~A~gyar~tg~~~v~ 70 (544)
T PRK07064 6 GELIAAFLEQCGVKTAFGVISIHNMP----ILDAIGRRGK--IRFVPAR---------GEAGAVNMADAHARVSGGLGVA 70 (544)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCcchH----HHHHHhccCC--ccEEeec---------cHHHHHHHHHHHHHhcCCCeEE
Confidence 46789999999999999887754443 33333222 3 3344221 11 6788887777777545544
Q ss_pred Ec
Q 009804 309 LI 310 (525)
Q Consensus 309 LI 310 (525)
++
T Consensus 71 ~~ 72 (544)
T PRK07064 71 LT 72 (544)
T ss_pred Ee
Confidence 43
No 328
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=22.91 E-value=9.5e+02 Score=25.71 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDG 253 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdg 253 (525)
-++++.+.+++.+.|.+||||-|.
T Consensus 76 a~~~~~~~i~~~~PDvlViispdh 99 (335)
T PRK13363 76 AIERMRDAIEAARIDVAVIVGNDQ 99 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCc
Confidence 378999999999999999998886
No 329
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=22.82 E-value=2.7e+02 Score=25.32 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=49.9
Q ss_pred cchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc--CC
Q 009804 193 GGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR--GL 270 (525)
Q Consensus 193 ~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~--g~ 270 (525)
.|+.|||-.+|.-++|.+..++.. .+|.+.+++.++++.=+++++ |===.-..+..|-+.++++ +.
T Consensus 26 ~GITGFyl~eYkGmSP~~wkgf~l-----------~EDpe~ai~~I~d~s~~aV~I-~TVV~~~~~~~i~~~i~ekL~~e 93 (110)
T PF10126_consen 26 GGITGFYLHEYKGMSPQDWKGFLL-----------DEDPEMAIKAINDLSENAVLI-GTVVDEEKVEKIEKLIKEKLKNE 93 (110)
T ss_pred cCccEEEeEeecCCChHHhcCccc-----------ccCHHHHHHHHHHhccCcEEE-EEEECHHHHHHHHHHHHHHhcCC
Confidence 467888888888888877765432 278999999999998887764 2222334455555544443 55
Q ss_pred ceeEEEeec
Q 009804 271 KVVVAGIPK 279 (525)
Q Consensus 271 ~i~VIgIPK 279 (525)
+-.++.+|-
T Consensus 94 ryTii~iPi 102 (110)
T PF10126_consen 94 RYTIIEIPI 102 (110)
T ss_pred ceEEEEeeE
Confidence 566777774
No 330
>PRK05568 flavodoxin; Provisional
Probab=22.67 E-value=5.4e+02 Score=22.79 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=23.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 246 VYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 246 L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+|.-+-..|..-|..|++.+++.|..+.++-+.+
T Consensus 7 vY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~ 40 (142)
T PRK05568 7 IYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSE 40 (142)
T ss_pred EEECCCchHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3333444567778889888888888777665554
No 331
>PRK09526 lacI lac repressor; Reviewed
Probab=22.57 E-value=4.9e+02 Score=26.29 Aligned_cols=75 Identities=9% Similarity=-0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--hhhHHHHHHhhhcCCcc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD--~sG~IAl~aaLAs~~ad 306 (525)
..+.++.|...++|++++.+..+.- ....+.+ +..+ ++||.+-...+.++.. +| .+|+.|+.--+..|+-+
T Consensus 109 ~~~~l~~l~~~~vdGiii~~~~~~~-~~~~~~~--~~~~--iPvV~~d~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~ 183 (342)
T PRK09526 109 CQAAVNELLAQRVSGVIINVPLEDA-DAEKIVA--DCAD--VPCLFLDVSPQSPVNSVSFDPEDGTRLGVEHLVELGHQR 183 (342)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCcc-hHHHHHh--hcCC--CCEEEEeccCCCCCCEEEECcHHHHHHHHHHHHHCCCCe
Confidence 4567888999999999997543321 1222221 1124 4455543322233332 34 77888877666666667
Q ss_pred EEEc
Q 009804 307 CCLI 310 (525)
Q Consensus 307 ~iLI 310 (525)
+.++
T Consensus 184 I~~l 187 (342)
T PRK09526 184 IALL 187 (342)
T ss_pred EEEE
Confidence 7776
No 332
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.55 E-value=1.9e+02 Score=29.17 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCccc--hhhHHHHHHHHHHcCCcEEEEE
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLEG--HGGLFEYIETRLKENGHMVIVI 341 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~leg--~~~lle~I~~rl~~~g~~VIVV 341 (525)
-+|.++.||. +++++++=|-..-||. ...+++.+++--++.+..||++
T Consensus 146 RvaIA~vLa~-~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~ 195 (235)
T COG1122 146 RVAIAGVLAM-GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV 195 (235)
T ss_pred eHHhhHHHHc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3678889998 7999999887766663 4455555554433345556554
No 333
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=22.29 E-value=1.8e+02 Score=29.39 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 294 IAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 294 IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
++++.+|+. +++++++=|---.|| ....+.+.|++..++.+..||+++
T Consensus 142 l~laraL~~-~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 142 VALARALIH-RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 778889988 799999966544444 344555655554444466777665
No 334
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.94 E-value=4.8e+02 Score=27.70 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHH--HHHHHHHHHHcCCceeEEEeeccccCCCCCC--c-hhhHHHHHHhhhcCCccE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKG--ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP--L-LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~--A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt--D-~sG~IAl~aaLAs~~ad~ 307 (525)
+.++++...+ ..|++.|.-|+=++ |..|+.++.++|..+..+-.+.-++ .+.-+ + ....-.....|. .+|+
T Consensus 174 ~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~-~l~~~~~~~~~~~~~~~~~l~--~~DL 249 (329)
T PRK06835 174 NFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE-ILREIRFNNDKELEEVYDLLI--NCDL 249 (329)
T ss_pred HHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH-HHHHHHhccchhHHHHHHHhc--cCCE
Confidence 3555555555 88999999888777 6778888888886543333322211 11000 0 001111123333 5899
Q ss_pred EEcCCCCCCc---cchhhHHHHHHHHHHcCCcEEEEEecC
Q 009804 308 CLIPESPFYL---EGHGGLFEYIETRLKENGHMVIVIAEG 344 (525)
Q Consensus 308 iLIPE~pf~l---eg~~~lle~I~~rl~~~g~~VIVVAEG 344 (525)
++|=+..... .....|++.|..|+..+. .+||-+.-
T Consensus 250 LIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k-~tIiTSNl 288 (329)
T PRK06835 250 LIIDDLGTEKITEFSKSELFNLINKRLLRQK-KMIISTNL 288 (329)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEECCC
Confidence 8887763221 113477888888887644 45554443
No 335
>PRK05858 hypothetical protein; Provisional
Probab=21.89 E-value=83 Score=35.18 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-hhhHHHHHHhhhcCCccEEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL-LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD-~sG~IAl~aaLAs~~ad~iL 309 (525)
-+.+++.|+++||+.+|-+-|+..+.-...+ .+.+ |..|... -| .+||.|-.-+.+++.+-+|+
T Consensus 8 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal----~~~~--i~~i~~r---------hE~~A~~~AdGyar~tg~~gv~~ 72 (542)
T PRK05858 8 GRLAARRLKAHGVDTMFTLSGGHLFPLYDGA----REEG--IRLIDVR---------HEQTAAFAAEAWAKLTRVPGVAV 72 (542)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHH----HhcC--CCEEeec---------cHHHHHHHHHHHHHhcCCCeEEE
Confidence 4678899999999999999998655543333 2333 3444322 11 66777766666665454444
Q ss_pred c
Q 009804 310 I 310 (525)
Q Consensus 310 I 310 (525)
+
T Consensus 73 ~ 73 (542)
T PRK05858 73 L 73 (542)
T ss_pred E
Confidence 4
No 336
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.89 E-value=9.2e+02 Score=25.15 Aligned_cols=88 Identities=11% Similarity=0.031 Sum_probs=55.6
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
...+|+++...-.-|=.+.+..++-..+.. +|. ++. +.+.+... ..
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~-~G~-~v~-------------------------------~~~~~~~d~~~ 68 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKE-LGV-DVT-------------------------------YDGPTEPSVSG 68 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHH-hCC-EEE-------------------------------EECCCCCCHHH
Confidence 345899999888889999999999887764 553 332 00111111 12
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAG 276 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIg 276 (525)
..++++.+...++|++++..-|... .....+.+.+.| |+||.
T Consensus 69 q~~~i~~li~~~vdgIiv~~~d~~a--l~~~l~~a~~~g--IpVV~ 110 (336)
T PRK15408 69 QVQLINNFVNQGYNAIIVSAVSPDG--LCPALKRAMQRG--VKVLT 110 (336)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHCC--CeEEE
Confidence 3467888999999999998755331 122334455567 45664
No 337
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=21.87 E-value=6.9e+02 Score=23.72 Aligned_cols=120 Identities=11% Similarity=0.068 Sum_probs=66.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHHH
Q 009804 156 ACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIV 235 (525)
Q Consensus 156 iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv 235 (525)
||+|..--..|-.+.+++++...+.. +|. ++. ++-+.....+..+++
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~-~g~-~v~-------------------------------~~~~~~~~~~~~~~~ 48 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKE-LGY-ELT-------------------------------VLDAQNDAAKQLNDI 48 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHH-cCc-eEE-------------------------------ecCCCCCHHHHHHHH
Confidence 66777656788888899999888764 342 221 111111122345777
Q ss_pred HHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-C-C--CCCc--hhhHHHHHHhhhc--CCccE
Q 009804 236 DSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-D-I--PVPL--LTWFIAMYATLAS--RDVDC 307 (525)
Q Consensus 236 ~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-D-I--~gtD--~sG~IAl~aaLAs--~~ad~ 307 (525)
+.+...+++++++.+-+ +-.....+ +++++++ +++|.+=...+. + + .++| .+|.+++.--+.. +.-.+
T Consensus 49 ~~~~~~~~dgii~~~~~-~~~~~~~l-~~l~~~~--ipvv~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i 124 (268)
T cd06323 49 EDLITRGVDAIIINPTD-SDAVVPAV-KAANEAG--IPVFTIDREANGGEVVSQIASDNVAGGKMAAEYLVKLLGGKGKV 124 (268)
T ss_pred HHHHHcCCCEEEEcCCC-hHHHHHHH-HHHHHCC--CcEEEEccCCCCCceEEEEccCcHHHHHHHHHHHHHHhCCCceE
Confidence 88888999999986433 32211223 3444556 455555222221 1 2 2344 5788777655554 44567
Q ss_pred EEcCC
Q 009804 308 CLIPE 312 (525)
Q Consensus 308 iLIPE 312 (525)
+++..
T Consensus 125 ~~l~~ 129 (268)
T cd06323 125 VELQG 129 (268)
T ss_pred EEEeC
Confidence 77744
No 338
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=21.86 E-value=1e+02 Score=30.65 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHcCCCEEEEEcCCcch----------------HHHHHHHHHHHHcCCceeEEE
Q 009804 237 SIQDRGINQVYIIGGDGTQ----------------KGASVIYEEVRRRGLKVVVAG 276 (525)
Q Consensus 237 ~l~~~~Id~L~vIGGdgS~----------------~~A~~L~e~~~~~g~~i~VIg 276 (525)
.+.....|+||+-||.|.+ ..+..|.+.+.+.|-.|..||
T Consensus 80 ~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIC 135 (217)
T PRK11780 80 EADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFIC 135 (217)
T ss_pred HCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEEC
Confidence 3345578999999999863 456777777777776555554
No 339
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=21.80 E-value=40 Score=31.01 Aligned_cols=54 Identities=13% Similarity=0.339 Sum_probs=38.7
Q ss_pred hhhcccccCcccccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHH
Q 009804 210 GVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYE 263 (525)
Q Consensus 210 ~v~~i~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e 263 (525)
.+..|...||.+..=.=++..++.+++.+++..=+.|+|+|+..--.-...+|+
T Consensus 16 ~i~~wK~~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evYe~AD 69 (120)
T PF01994_consen 16 YIREWKEKGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEVYELAD 69 (120)
T ss_dssp HHHC----SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCHHHHSS
T ss_pred HHHHhcccCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhCC
Confidence 577888889987777777889999999999999999999999998888877764
No 340
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=21.80 E-value=1.9e+02 Score=27.60 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=30.9
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. +++++++=|---.|| ....+.+.|++..+ .+..||+++
T Consensus 140 rv~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~s 189 (213)
T cd03235 140 RVLLARALVQ-DPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVT 189 (213)
T ss_pred HHHHHHHHHc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 4778888988 799999966544444 23445555554333 466777765
No 341
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=21.67 E-value=2.2e+02 Score=27.27 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=33.5
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-+++..+|+. .++++++=|-.-.+| ....+.+.|++..++.+..||+++
T Consensus 136 rl~laral~~-~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vs 186 (213)
T TIGR01277 136 RVALARCLVR-PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186 (213)
T ss_pred HHHHHHHHhc-CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3777888888 799999877654454 344566666655554577888776
No 342
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.63 E-value=5.3e+02 Score=28.31 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=54.1
Q ss_pred cccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhh
Q 009804 221 VLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATL 300 (525)
Q Consensus 221 iLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaL 300 (525)
+||......|.+++.+.|++.||+...++.|+.|+.....+.+ -...++..|.. | ..++-.|
T Consensus 196 iig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~------A~lniv~~~~~-----------~-~~~A~~L 257 (443)
T TIGR01862 196 IIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHK------AKLNLVHCARS-----------A-NYIANEL 257 (443)
T ss_pred EEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccc------CCEEEEEChHH-----------H-HHHHHHH
Confidence 5554444567889999999999999888888877766555543 22344433321 1 1122334
Q ss_pred hcC-CccEEEcCCCCCCccchhhHHHHHHHHH
Q 009804 301 ASR-DVDCCLIPESPFYLEGHGGLFEYIETRL 331 (525)
Q Consensus 301 As~-~ad~iLIPE~pf~leg~~~lle~I~~rl 331 (525)
..+ +..++..| |+-+++-..++..|.+.+
T Consensus 258 ~er~GiP~~~~~--p~G~~~t~~~l~~la~~~ 287 (443)
T TIGR01862 258 EERYGIPWMKID--FFGFTYTAESLRAIAAFF 287 (443)
T ss_pred HHHhCCCeEecc--cCCHHHHHHHHHHHHHHh
Confidence 332 55566666 566665555665555543
No 343
>PRK02399 hypothetical protein; Provisional
Probab=21.49 E-value=97 Score=34.09 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=49.0
Q ss_pred cCCeEEEEEccchhhhccCCeEeCChhhhhcccccCccccccc--CCC------CcHHHHHHHHHH-cCCCEEEEEcCCc
Q 009804 183 YGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTS--RGG------HDTSKIVDSIQD-RGINQVYIIGGDG 253 (525)
Q Consensus 183 ~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSs--R~~------~d~~~iv~~l~~-~~Id~L~vIGGdg 253 (525)
.| .+++-+.=|..|=-. ...+++.++|...+..+...+.+. |+. ....++++.|.+ .+|++++-+||.+
T Consensus 29 ~g-~~v~~iDv~~~~~p~-~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~L~~~g~i~gviglGGs~ 106 (406)
T PRK02399 29 AG-LEVVTVDVSGLGEPP-FEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAAFVRELYERGDVAGVIGLGGSG 106 (406)
T ss_pred CC-CceEEEecCCCCCCC-CCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCcc
Confidence 45 466666555443111 113667777776664444334333 442 123455554444 5699999999987
Q ss_pred chHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 254 TQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 254 S~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
.=.-|....+ .++ +|+||=|
T Consensus 107 GT~lat~aMr-----~LP---iG~PKlm 126 (406)
T PRK02399 107 GTALATPAMR-----ALP---IGVPKLM 126 (406)
T ss_pred hHHHHHHHHH-----hCC---CCCCeEE
Confidence 5444433322 466 6899944
No 344
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.43 E-value=4e+02 Score=26.90 Aligned_cols=24 Identities=4% Similarity=-0.021 Sum_probs=18.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcC
Q 009804 406 PSNASDNVYCTLLAQSCVHGAMAG 429 (525)
Q Consensus 406 ~psa~Dr~~a~~LG~~AV~~a~aG 429 (525)
++.+.-..-+..+|+.|++.+++-
T Consensus 235 ~~lt~i~~~~~~~G~~a~~~l~~~ 258 (279)
T PF00532_consen 235 PPLTTIQQPAYEMGRQAAEMLLER 258 (279)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEecCCCchHHHHHHHHHHH
Confidence 344555566889999999999883
No 345
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=21.26 E-value=2.3e+02 Score=27.16 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 294 IAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 294 IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
++++.+|+. +++++|+=|---.+| ....+.+.|++..++.+..||+++
T Consensus 149 v~la~al~~-~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 198 (218)
T cd03255 149 VAIARALAN-DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVT 198 (218)
T ss_pred HHHHHHHcc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 788899998 799999977654444 334555555544333467777766
No 346
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=21.25 E-value=5.9e+02 Score=27.27 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEE
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAG 276 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIg 276 (525)
.+.+.+++.+++++||.++ +|.+..+ +..+++.+++.|+ +++|
T Consensus 49 ~d~~~l~~~~~~~~id~vi-~~~e~~l--~~~~~~~l~~~gi--~~~g 91 (420)
T PRK00885 49 TDIEALVAFAKEEGIDLTV-VGPEAPL--VAGIVDAFRAAGL--PIFG 91 (420)
T ss_pred CCHHHHHHHHHHhCCCEEE-ECCchHH--HHHHHHHHHHCCC--cEEC
Confidence 4688899999999999877 4655433 3355666766674 4555
No 347
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.25 E-value=1.1e+03 Score=25.71 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHH---HHHHHHHHHHc--CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcC--
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKG---ASVIYEEVRRR--GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASR-- 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~---A~~L~e~~~~~--g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~-- 303 (525)
.+.|.+..++++-+.++|+..--+-.. ...+.++++++ ...++||.|.. .+..+....||-++.-+|...
T Consensus 73 ~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t---~gF~g~~~~G~~~a~~al~~~~~ 149 (429)
T cd03466 73 KKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPAST---PGYGGTHVEGYDTAVRSIVKNIA 149 (429)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEEC---CCCcccHHHHHHHHHHHHHHHhc
Confidence 355556667778999998874333222 22233444433 12356675543 234454468998877777532
Q ss_pred -----CccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEec-------------------CCCCcchhHHhhhhcc
Q 009804 304 -----DVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAE-------------------GAGQDLLAESIRSATQ 359 (525)
Q Consensus 304 -----~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAE-------------------Ga~~~~~~~~~~~~~~ 359 (525)
.-.+-||++.... +=++.|++.+++-|--++++.. |.. + +.+. ..
T Consensus 150 ~~~~~~~~VNlig~~~~~-----~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~---~-~~i~--~~ 218 (429)
T cd03466 150 VDPDKIEKINVIAGMMSP-----ADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTP---I-SEIK--GM 218 (429)
T ss_pred cCCCCCCcEEEECCCCCh-----hHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCC---H-HHHH--hh
Confidence 1126677765332 1246677777776766655332 221 1 1111 12
Q ss_pred ccccCCccch---hHHHHHHHHHHHHhCC
Q 009804 360 QDASGNKLLQ---DVGLWLSQKIKDHFAK 385 (525)
Q Consensus 360 ~DasGn~~L~---dig~~La~~Ik~~~~~ 385 (525)
-+|.-|..++ +.+..+++.++++|+.
T Consensus 219 ~~A~lniv~~~~~~~g~~~A~~L~e~~gi 247 (429)
T cd03466 219 GGAKATIELGMFVDHGLSAGSYLEEEFGI 247 (429)
T ss_pred ccCcEEEEEccCccchHHHHHHHHHHHCC
Confidence 3455666665 4678889999998873
No 348
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=21.23 E-value=4.9e+02 Score=26.05 Aligned_cols=64 Identities=25% Similarity=0.418 Sum_probs=38.0
Q ss_pred cccCcccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCcee-EEEeeccc
Q 009804 215 HKRGGTVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVV-VAGIPKTI 281 (525)
Q Consensus 215 ~~~GGtiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~-VIgIPKTI 281 (525)
...|+.+.+..+. ..++..++..+++.+.|.+++.++-. .+..+.+.+++.+++.. +...+-..
T Consensus 160 ~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T PF13458_consen 160 EAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPA---DAAAFLRQLRQLGLKPPRIPLFGTSL 227 (343)
T ss_dssp HHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHH---HHHHHHHHHHHTTGCSCTEEEEEGGG
T ss_pred hhcCceeccceecccccccchHHHHHHhhcCCCEEEEeccch---hHHHHHHHHHhhccccccceeecccc
Confidence 3445554444332 36789999999999999966666322 23334455667777643 33333333
No 349
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.21 E-value=2.4e+02 Score=27.21 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. .++++++=|---.+| ....+.+.|++..++.+..||+++
T Consensus 139 rl~la~al~~-~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 189 (220)
T cd03293 139 RVALARALAV-DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVT 189 (220)
T ss_pred HHHHHHHHHc-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4778889998 799999977544444 244555666654444567777765
No 350
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.19 E-value=2.3e+02 Score=27.22 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCccc--hhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLEG--HGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~leg--~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. +++++++=|-.-.+|- ...+.+.|++..++.+..||+++
T Consensus 139 rv~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 139 RVALARALAA-QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred HHHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 4778888988 7999999886555552 34455555544344467777765
No 351
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.19 E-value=2.1e+02 Score=28.70 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=32.4
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCccc--hhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLEG--HGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~leg--~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-+|++.+|+. .++++|+=|---.||- ...+++.|++..++.+..||+++
T Consensus 123 rv~iaraL~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 123 RVAIAACLSK-DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred HHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4778889998 8999999877655553 33445555544444466777765
No 352
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=21.13 E-value=4.7e+02 Score=28.35 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLI 310 (525)
.+.|.+..++++-+.++|+++--+......+...+++....++||.|+- .+-. +.-..|++.+.-+++ |.-+|
T Consensus 64 ~eaI~ea~e~y~P~lI~VvTTCvseIIGDDIeaVvkE~~~giPVI~V~t--~GGf-Gdn~~G~~~aLeAii----dq~~i 136 (352)
T TIGR03282 64 VKVIRYAEEKFKPELIGVVGTCASMIIGEDLKEAVDEADVDAEVIAVEV--HAGF-GDNTEGVIATLESAA----EAGII 136 (352)
T ss_pred HHHHHHHHHhcCCCEEEEECCCchhhccCCHHHHHHHhCCCCCEEEEEC--CCCC-ccHHHHHHHHHHHHH----HhCCc
Confidence 3555667777899999999987777666555555555455677776643 2222 433789887555543 34588
Q ss_pred CCCCCCccchhhHHH
Q 009804 311 PESPFYLEGHGGLFE 325 (525)
Q Consensus 311 PE~pf~leg~~~lle 325 (525)
+|..|.-. ..+++
T Consensus 137 ~~~e~~rq--~~~l~ 149 (352)
T TIGR03282 137 DEDEVERQ--KELLK 149 (352)
T ss_pred CHHHHHHH--HHHHH
Confidence 99887643 34444
No 353
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=20.89 E-value=2.3e+02 Score=27.45 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 294 IAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 294 IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
++++.+|+. +++++++=|---.+| ....+.+.|++..++.+..||+++
T Consensus 155 l~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 155 VALARAFNG-RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 778889998 799999877654454 344555555544344466777765
No 354
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=94 Score=34.79 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCcc---------hHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 242 GINQVYIIGGDGT---------QKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 242 ~Id~L~vIGGdgS---------~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
.-.++++.|-++| ..-...+.+++.++++-+.|||-|.|
T Consensus 422 ~~~gfivyG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPat 469 (519)
T KOG1357|consen 422 QKMGFIVYGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPAT 469 (519)
T ss_pred hcCcEEEecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCc
Confidence 4445555555555 22233345555555655666666655
No 355
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.75 E-value=2.3e+02 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=32.5
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCccc--hhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLEG--HGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~leg--~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. .++++|+=|-.-.+|. ...+.+.|++..+ ++..||+++
T Consensus 103 rv~laral~~-~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~t 152 (173)
T cd03230 103 RLALAQALLH-DPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSS 152 (173)
T ss_pred HHHHHHHHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 4678889998 7999999887666653 3455566655444 366666655
No 356
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=20.74 E-value=8.5e+02 Score=24.33 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=66.0
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
..||++...-.-|-.+.++.++...+.. +|. +++ +.-+....+...+
T Consensus 60 ~~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~gy-~~~-------------------------------i~~~~~~~~~~~~ 106 (311)
T TIGR02405 60 KVVAVIVSRLDSPSENLAVSGMLPVFYT-AGY-DPI-------------------------------IMESQFSPQLTNE 106 (311)
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHH-CCC-eEE-------------------------------EecCCCChHHHHH
Confidence 4788888643456667778888777754 442 221 0111222223456
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccEEE
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDCCL 309 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~iL 309 (525)
.++.|..+++|++|+++...-... .+ .+.+.++.+++-+ +.+++ .+| .+|+.|+.--+..|+-.+.+
T Consensus 107 ~~~~l~~~~vdGvIi~~~~~~~~~--~l----~~~~~p~V~i~~~---~~~~~~V~~D~~~~~~~a~~~L~~~Ghr~I~~ 177 (311)
T TIGR02405 107 HLSVLQKRNVDGVILFGFTGCDEE--IL----ESWNHKAVVIARD---TGGFSSVCYDDYGAIELLMANLYQQGHRHISF 177 (311)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCHH--HH----HhcCCCEEEEecC---CCCccEEEeCcHHHHHHHHHHHHHcCCCcEEE
Confidence 678889999999999975421111 12 2235454444432 11122 234 78888887777776667777
Q ss_pred c
Q 009804 310 I 310 (525)
Q Consensus 310 I 310 (525)
|
T Consensus 178 i 178 (311)
T TIGR02405 178 L 178 (311)
T ss_pred E
Confidence 7
No 357
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.66 E-value=4.6e+02 Score=26.83 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=39.8
Q ss_pred ccccCcccccccCC---CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEE
Q 009804 214 IHKRGGTVLGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVA 275 (525)
Q Consensus 214 i~~~GGtiLGSsR~---~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VI 275 (525)
+...|+++..+.+. ..|+...+..++..+.|.+++++..+ .+..+.+.+++.|++..++
T Consensus 168 ~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~ 229 (362)
T cd06343 168 LGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPK---FAAQAIRKAAELGWKPTFL 229 (362)
T ss_pred HHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcH---HHHHHHHHHHHcCCCceEE
Confidence 34456665555443 35788899999999999999887553 2344566777788864444
No 358
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=20.65 E-value=2.2e+02 Score=28.03 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=33.7
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEec
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIAE 343 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVAE 343 (525)
-++++.+|+. +++++|+=|---.|| ....+++.|++..++.+..||+++-
T Consensus 156 rv~laral~~-~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 156 RLQIARNLVT-RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred HHHHHHHHhc-CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3778889998 799999966543444 2445566666554545777887764
No 359
>PLN02591 tryptophan synthase
Probab=20.64 E-value=2.5e+02 Score=28.78 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe-ecc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI-PKT 280 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI-PKT 280 (525)
..++.++.+++.|+++|++. |=.+..+..+.+.++++|+.. |..| |.|
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~-I~lv~Ptt 142 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL-VLLTTPTT 142 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE-EEEeCCCC
Confidence 36677777788888887777 566677777777777777763 4445 444
No 360
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.36 E-value=2.4e+02 Score=26.94 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHhhhcCCccEEEcCCCCCCcc--chhhHHHHHHHHHHcCCcEEEEEe
Q 009804 294 IAMYATLASRDVDCCLIPESPFYLE--GHGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 294 IAl~aaLAs~~ad~iLIPE~pf~le--g~~~lle~I~~rl~~~g~~VIVVA 342 (525)
++++.+|+. +++++++=|---.|| ....+.+.|++..++.+..||+++
T Consensus 139 l~la~al~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 188 (213)
T cd03259 139 VALARALAR-EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVT 188 (213)
T ss_pred HHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 788889998 799999877654554 234555656554444477777765
No 361
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=20.25 E-value=2.3e+02 Score=31.10 Aligned_cols=58 Identities=19% Similarity=0.443 Sum_probs=41.1
Q ss_pred ccCcccccccCC--CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-C--CceeEEEeecc
Q 009804 216 KRGGTVLGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-G--LKVVVAGIPKT 280 (525)
Q Consensus 216 ~~GGtiLGSsR~--~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g--~~i~VIgIPKT 280 (525)
..+|.++-|+-- ++.++.++..++++++|.++|+|-. .|+..+++. . -+++|+-+||+
T Consensus 211 r~sG~iInT~g~i~~egy~~llhai~~f~v~vviVLg~E-------rLy~~lkk~~~~~~~v~vv~lpKs 273 (415)
T KOG2749|consen 211 RVSGCIINTCGWIEGEGYAALLHAIKAFEVDVVIVLGQE-------RLYSSLKKDLPPKKNVRVVKLPKS 273 (415)
T ss_pred cccceEEeccceeccccHHHHHHHHHHcCccEEEEeccH-------HHHHHHHhhccccccceEEEecCC
Confidence 356767766543 4679999999999999999999876 455555432 1 24677888873
No 362
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=20.25 E-value=98 Score=34.56 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc--hhhHHHHHHhhhcCCccEE
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--~sG~IAl~aaLAs~~ad~i 308 (525)
-+.+++.|+++||+.+|.+-|+..+.-...| .+.+ |.+|.+ .+ .+||.|..-+.+++.+-+|
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al----~~~~--i~~v~~----------~hE~~A~~~Adgyar~sg~~gv~ 67 (548)
T PRK08978 4 AQWVVHALRAQGVDTVFGYPGGAIMPVYDAL----YDGG--VEHLLC----------RHEQGAAMAAIGYARATGKVGVC 67 (548)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHH----HhcC--CeEEEe----------ccHHHHHHHHHHHHHHhCCCEEE
Confidence 3678999999999999999998766644434 3334 444433 23 8899998888888667777
Q ss_pred EcCCCC
Q 009804 309 LIPESP 314 (525)
Q Consensus 309 LIPE~p 314 (525)
++-=-|
T Consensus 68 ~~t~Gp 73 (548)
T PRK08978 68 IATSGP 73 (548)
T ss_pred EECCCC
Confidence 655443
No 363
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.23 E-value=7.9e+02 Score=24.57 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccE-E
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDC-C 308 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~-i 308 (525)
+++++++.|.+- +.++++|-..|..-|..++..+.+.|.+ +. ...|. ..+...+.... .-|+ +
T Consensus 117 ~l~~~~~~i~~a--~~I~i~G~G~s~~~A~~~~~~l~~~g~~--~~-----~~~d~------~~~~~~~~~~~-~~Dv~I 180 (278)
T PRK11557 117 KLHECVTMLRSA--RRIILTGIGASGLVAQNFAWKLMKIGIN--AV-----AERDM------HALLATVQALS-PDDLLL 180 (278)
T ss_pred HHHHHHHHHhcC--CeEEEEecChhHHHHHHHHHHHhhCCCe--EE-----EcCCh------HHHHHHHHhCC-CCCEEE
Confidence 467777777664 5799999988988888888777655543 22 11222 12222333333 3444 4
Q ss_pred EcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCC
Q 009804 309 LIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGA 345 (525)
Q Consensus 309 LIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa 345 (525)
.|.-...+- ++.+. .+..+++|--||++.-..
T Consensus 181 ~iS~sg~~~----~~~~~-~~~ak~~ga~iI~IT~~~ 212 (278)
T PRK11557 181 AISYSGERR----ELNLA-ADEALRVGAKVLAITGFT 212 (278)
T ss_pred EEcCCCCCH----HHHHH-HHHHHHcCCCEEEEcCCC
Confidence 443333332 34443 345666777777765543
No 364
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=20.22 E-value=2.4e+02 Score=27.36 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCccEEEcCCCCCCccc--hh-hHHHHHHHHHHcCCcEEEEEec
Q 009804 294 IAMYATLASRDVDCCLIPESPFYLEG--HG-GLFEYIETRLKENGHMVIVIAE 343 (525)
Q Consensus 294 IAl~aaLAs~~ad~iLIPE~pf~leg--~~-~lle~I~~rl~~~g~~VIVVAE 343 (525)
+|+..+|+. +++++++-|-.-.++. .. .+.+.|++..++.+..||+++-
T Consensus 130 lala~al~~-~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH 181 (204)
T cd03240 130 LALAETFGS-NCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181 (204)
T ss_pred HHHHHHhcc-CCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 456667777 7999999887666663 22 3445444332223677877763
No 365
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=20.20 E-value=2.5e+02 Score=27.62 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=32.1
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCccc--hhhHHHHHHHHHHcCCcEEEEEe
Q 009804 293 FIAMYATLASRDVDCCLIPESPFYLEG--HGGLFEYIETRLKENGHMVIVIA 342 (525)
Q Consensus 293 ~IAl~aaLAs~~ad~iLIPE~pf~leg--~~~lle~I~~rl~~~g~~VIVVA 342 (525)
-++++.+|+. +++++++=|-.-.+|- ...+.+.|++..++++..||+++
T Consensus 161 rl~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 211 (236)
T cd03267 161 RAEIAAALLH-EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211 (236)
T ss_pred HHHHHHHHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 4678888988 7999999887655553 33455555543333466777765
No 366
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=20.20 E-value=1.5e+02 Score=27.27 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=26.2
Q ss_pred EEEEcCCcchHH--HHHHHHHHHHcCCceeEEEeec
Q 009804 246 VYIIGGDGTQKG--ASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 246 L~vIGGdgS~~~--A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+++.|.|||=++ +..|++.+.++|+++.++.-|.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~ 38 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG 38 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 678899998776 6789998888888766665554
No 367
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=20.13 E-value=6.7e+02 Score=27.36 Aligned_cols=102 Identities=19% Similarity=0.330 Sum_probs=65.1
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
-+++|+-+||. |||++..+. .+|-.+|++ ++++++..+.-...|-|-.=.++...++.+
T Consensus 187 ~tvaV~GlGgV--GlaaI~gA~------~agA~~IiA-------------vD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~ 245 (366)
T COG1062 187 DTVAVFGLGGV--GLAAIQGAK------AAGAGRIIA-------------VDINPEKLELAKKFGATHFVNPKEVDDVVE 245 (366)
T ss_pred CeEEEEeccHh--HHHHHHHHH------HcCCceEEE-------------EeCCHHHHHHHHhcCCceeecchhhhhHHH
Confidence 36777777664 666444333 245556776 678887777767777764434443236777
Q ss_pred HHHHHHHcCCCEEEE-EcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 234 IVDSIQDRGINQVYI-IGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 234 iv~~l~~~~Id~L~v-IGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
.+..+-..+.|+.|- +|.-..|+.|.... .+-| ...+||+|..
T Consensus 246 ~i~~~T~gG~d~~~e~~G~~~~~~~al~~~---~~~G-~~v~iGv~~~ 289 (366)
T COG1062 246 AIVELTDGGADYAFECVGNVEVMRQALEAT---HRGG-TSVIIGVAGA 289 (366)
T ss_pred HHHHhcCCCCCEEEEccCCHHHHHHHHHHH---hcCC-eEEEEecCCC
Confidence 777788889998764 55556677666543 2334 5678888863
No 368
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.08 E-value=2.4e+02 Score=26.03 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHcCC-CEEEEEcCCc---chHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 229 HDTSKIVDSIQDRGI-NQVYIIGGDG---TQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I-d~L~vIGGdg---S~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
...+++++.|++.++ +..+++||.- ..+.+. -.+++++.|+. -|.=|.|
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~-~~~~L~~~Gv~--~vf~pgt 117 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFED-VEKRFKEMGFD--RVFAPGT 117 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHH-HHHHHHHcCCC--EEECcCC
Confidence 467899999999999 8788999984 333333 22445666763 3444554
No 369
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.08 E-value=1.1e+03 Score=25.17 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHH---HHHHHHHH-cCCceeEEEeeccccCCCCC-CchhhHHHHHHhhhcC--
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGAS---VIYEEVRR-RGLKVVVAGIPKTIDNDIPV-PLLTWFIAMYATLASR-- 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~---~L~e~~~~-~g~~i~VIgIPKTIDNDI~g-tD~sG~IAl~aaLAs~-- 303 (525)
.+.|.+.+++++-+.++|+..--+-.... .+.+++++ .+ ++||.|.- ++..+ +-..||-++.-+|...
T Consensus 76 ~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~--~~vi~v~t---~gf~g~~~~~G~~~a~~al~~~l~ 150 (406)
T cd01967 76 KKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELG--IPVIPVNC---EGFRGVSQSLGHHIANDAILDHLV 150 (406)
T ss_pred HHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhC--CCEEEEeC---CCeeCCcccHHHHHHHHHHHHHhc
Confidence 34555666778999999988544333222 22233332 34 45555543 33444 4478888776666531
Q ss_pred ---------CccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEE-EecCCCCcchhHHhhhhccccccCCccch-hHH
Q 009804 304 ---------DVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIV-IAEGAGQDLLAESIRSATQQDASGNKLLQ-DVG 372 (525)
Q Consensus 304 ---------~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIV-VAEGa~~~~~~~~~~~~~~~DasGn~~L~-dig 372 (525)
.-.+-||++..+ . +-++.|++.+++-|.-++. ...|..-+ ++. ..-++.-|..+. ..+
T Consensus 151 ~~~~~~~~~~~~VNiig~~~~--~---~d~~el~~lL~~~Gi~~~~~~~~~~~~~----~i~--~~~~A~~niv~~~~~~ 219 (406)
T cd01967 151 GTKEPEEKTPYDVNIIGEYNI--G---GDAWVIKPLLEELGIRVNATFTGDGTVD----ELR--RAHRAKLNLVHCSRSM 219 (406)
T ss_pred CCCCcCCCCCCeEEEEecccc--c---hhHHHHHHHHHHcCCEEEEEeCCCCCHH----HHh--hCccCCEEEEEChHHH
Confidence 112566666432 2 2235677777777776655 44444311 111 123455566654 467
Q ss_pred HHHHHHHHHHhC
Q 009804 373 LWLSQKIKDHFA 384 (525)
Q Consensus 373 ~~La~~Ik~~~~ 384 (525)
..+++.++++++
T Consensus 220 ~~~a~~L~~r~G 231 (406)
T cd01967 220 NYLAREMEERYG 231 (406)
T ss_pred HHHHHHHHHhhC
Confidence 888999998886
No 370
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.03 E-value=4.7e+02 Score=25.13 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcch-HHHHHHHHHHHHcCCceeEEEeecc----ccCCCCCCc-hhhHHHHH------
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQ-KGASVIYEEVRRRGLKVVVAGIPKT----IDNDIPVPL-LTWFIAMY------ 297 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~-~~A~~L~e~~~~~g~~i~VIgIPKT----IDNDI~gtD-~sG~IAl~------ 297 (525)
..+++++.|++-+ +=++++|+.-.- ..+..|.+..++.+ ++|+.-|.. +|.++---. +-|-+...
T Consensus 16 ~p~~aa~lLk~AK-RPvIivG~ga~~~~a~e~l~~laEklg--iPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~ 92 (162)
T TIGR00315 16 SPKLVAMMIKRAK-RPLLIVGPENLEDEEKELIVKFIEKFD--LPVVATADTYRALIEAGIESEEMNLHEITQFLADPSW 92 (162)
T ss_pred CHHHHHHHHHcCC-CcEEEECCCcCcccHHHHHHHHHHHHC--CCEEEcCccccccccCCeecCCCCHHHHHHhccCchh
Confidence 3578888888654 778888876643 33444444444446 556766644 344443000 11211111
Q ss_pred Hhhh-cCCccEEEcCCCCCCcc
Q 009804 298 ATLA-SRDVDCCLIPESPFYLE 318 (525)
Q Consensus 298 aaLA-s~~ad~iLIPE~pf~le 318 (525)
=++. .+.+|++|+=-..|++.
T Consensus 93 e~~~g~g~~DlvlfvG~~~y~~ 114 (162)
T TIGR00315 93 EGFDGEGNYDLVLFLGIIYYYL 114 (162)
T ss_pred hhccCCCCcCEEEEeCCcchHH
Confidence 1111 14789999888888644
No 371
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=20.02 E-value=1e+02 Score=31.57 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
...++++.++..+.|.++-+||--.++.+...+.+. + ++.|.||-+..||=.
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~---~--~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL---G--IPFISVPTAASHDGF 114 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH---T----EEEEES--SSGGG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc---C--CCEEEeccccccccc
Confidence 467788888888999999999987777777666542 4 678999999999943
Done!