Query 009804
Match_columns 525
No_of_seqs 323 out of 1443
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 1.8E-91 6.1E-96 749.3 31.3 388 76-475 15-455 (487)
2 3hno_A Pyrophosphate-dependent 100.0 1.4E-87 4.7E-92 710.6 27.5 343 153-525 3-416 (419)
3 2f48_A Diphosphate--fructose-6 100.0 3E-74 1E-78 626.1 23.7 393 89-499 11-538 (555)
4 1zxx_A 6-phosphofructokinase; 100.0 7.4E-73 2.5E-77 579.8 30.4 271 154-466 2-315 (319)
5 1pfk_A Phosphofructokinase; tr 100.0 1.1E-72 3.7E-77 578.9 30.7 272 154-467 3-318 (320)
6 4a3s_A 6-phosphofructokinase; 100.0 3.2E-72 1.1E-76 575.6 29.5 273 154-468 2-317 (319)
7 3o8l_A 6-phosphofructokinase, 100.0 2.4E-68 8.1E-73 595.6 24.2 300 152-478 14-380 (762)
8 3o8l_A 6-phosphofructokinase, 100.0 3.9E-65 1.3E-69 569.7 27.9 289 151-468 398-746 (762)
9 3o8o_A 6-phosphofructokinase s 100.0 2.5E-65 8.6E-70 571.7 25.7 299 152-478 4-370 (787)
10 3o8o_B 6-phosphofructokinase s 100.0 7.9E-65 2.7E-69 567.5 28.9 299 153-478 3-370 (766)
11 3opy_A 6-phosphofructo-1-kinas 100.0 1.3E-64 4.4E-69 571.1 30.0 300 151-478 208-575 (989)
12 3opy_B 6-phosphofructo-1-kinas 100.0 8.9E-65 3E-69 573.4 26.9 300 152-478 180-548 (941)
13 3o8o_A 6-phosphofructokinase s 100.0 5E-63 1.7E-67 553.2 27.8 289 151-470 391-765 (787)
14 3o8o_B 6-phosphofructokinase s 100.0 2.9E-63 9.9E-68 554.9 25.2 287 152-469 392-754 (766)
15 3opy_B 6-phosphofructo-1-kinas 100.0 4.2E-63 1.4E-67 559.8 26.2 288 151-469 569-930 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 4.2E-62 1.4E-66 550.7 25.6 287 151-469 596-975 (989)
17 2an1_A Putative kinase; struct 92.1 0.21 7.2E-06 49.4 6.5 89 154-278 6-94 (292)
18 3l49_A ABC sugar (ribose) tran 91.3 2.1 7.1E-05 40.5 12.3 124 152-312 4-133 (291)
19 2i2c_A Probable inorganic poly 91.1 0.11 3.8E-06 51.3 3.2 46 231-279 17-69 (272)
20 3tb6_A Arabinose metabolism tr 90.5 2.6 9.1E-05 39.7 12.2 123 153-310 15-143 (298)
21 3m9w_A D-xylose-binding peripl 88.7 6.7 0.00023 37.6 13.7 122 153-311 2-130 (313)
22 3g1w_A Sugar ABC transporter; 87.5 4.5 0.00015 38.5 11.5 124 151-311 2-134 (305)
23 3rot_A ABC sugar transporter, 87.1 6.8 0.00023 37.3 12.6 122 153-311 3-137 (297)
24 3k4h_A Putative transcriptiona 86.8 4.7 0.00016 38.0 11.1 120 152-311 7-138 (292)
25 3egc_A Putative ribose operon 86.6 9.5 0.00032 36.0 13.2 119 152-313 7-134 (291)
26 3o74_A Fructose transport syst 86.1 17 0.00059 33.6 14.5 116 154-311 3-127 (272)
27 3gv0_A Transcriptional regulat 86.1 10 0.00035 35.9 13.2 118 152-312 7-135 (288)
28 3jy6_A Transcriptional regulat 85.4 13 0.00046 34.7 13.5 121 151-311 5-130 (276)
29 1z0s_A Probable inorganic poly 84.3 0.45 1.5E-05 47.7 2.6 43 231-279 42-99 (278)
30 3uug_A Multiple sugar-binding 83.6 16 0.00055 35.0 13.4 124 152-312 2-139 (330)
31 2qv7_A Diacylglycerol kinase D 82.1 1.2 4E-05 44.9 4.7 50 232-284 70-119 (337)
32 2bon_A Lipid kinase; DAG kinas 81.1 1.9 6.5E-05 43.4 5.8 50 232-284 72-123 (332)
33 1dbq_A Purine repressor; trans 79.9 29 0.00099 32.4 13.4 120 153-311 7-133 (289)
34 3kke_A LACI family transcripti 79.4 14 0.00047 35.4 11.1 119 153-311 15-138 (303)
35 2rgy_A Transcriptional regulat 79.2 35 0.0012 32.1 13.9 120 152-311 7-135 (290)
36 3clk_A Transcription regulator 78.6 16 0.00055 34.5 11.3 123 152-312 7-133 (290)
37 3huu_A Transcription regulator 78.6 12 0.00041 35.7 10.5 120 152-311 21-151 (305)
38 3qk7_A Transcriptional regulat 77.9 24 0.00082 33.5 12.3 119 153-311 6-133 (294)
39 3dbi_A Sugar-binding transcrip 77.6 39 0.0013 32.6 14.0 122 152-312 60-189 (338)
40 3h75_A Periplasmic sugar-bindi 77.2 14 0.00049 36.0 10.8 122 153-312 3-153 (350)
41 1u0t_A Inorganic polyphosphate 77.2 0.85 2.9E-05 45.7 1.8 34 240-278 73-106 (307)
42 3d8u_A PURR transcriptional re 77.0 18 0.00061 33.6 10.9 118 154-311 4-127 (275)
43 3pfn_A NAD kinase; structural 76.7 1.3 4.4E-05 46.1 3.0 108 145-278 30-139 (365)
44 3ksm_A ABC-type sugar transpor 76.5 47 0.0016 30.5 14.5 124 154-312 1-135 (276)
45 3e61_A Putative transcriptiona 76.2 35 0.0012 31.6 12.8 118 153-311 8-129 (277)
46 3k9c_A Transcriptional regulat 76.0 53 0.0018 30.9 14.4 119 152-312 11-134 (289)
47 3e3m_A Transcriptional regulat 75.2 28 0.00096 34.1 12.3 119 153-311 70-194 (355)
48 2fep_A Catabolite control prot 75.2 46 0.0016 31.3 13.5 120 153-312 16-141 (289)
49 3h5o_A Transcriptional regulat 75.0 25 0.00086 34.1 11.8 119 153-311 62-185 (339)
50 1yt5_A Inorganic polyphosphate 74.9 0.97 3.3E-05 44.1 1.5 32 241-278 40-71 (258)
51 2fvy_A D-galactose-binding per 74.9 20 0.00069 33.8 10.8 111 154-301 3-125 (309)
52 3l6u_A ABC-type sugar transpor 73.5 55 0.0019 30.5 13.5 123 152-311 7-142 (293)
53 3afo_A NADH kinase POS5; alpha 73.4 1.1 3.9E-05 46.8 1.6 33 241-278 113-146 (388)
54 3bil_A Probable LACI-family tr 72.5 25 0.00087 34.5 11.2 120 153-312 66-192 (348)
55 3hcw_A Maltose operon transcri 72.0 14 0.00049 35.1 9.0 120 152-311 6-138 (295)
56 3d02_A Putative LACI-type tran 71.1 68 0.0023 30.0 15.1 123 152-311 3-134 (303)
57 3bbl_A Regulatory protein of L 70.7 44 0.0015 31.4 12.1 120 153-311 4-132 (287)
58 2rjo_A Twin-arginine transloca 70.7 25 0.00084 34.0 10.5 122 152-311 4-143 (332)
59 3c3k_A Alanine racemase; struc 69.2 47 0.0016 31.1 11.9 119 152-311 7-131 (285)
60 3kjx_A Transcriptional regulat 68.1 25 0.00087 34.2 10.1 118 153-310 68-191 (344)
61 1jq5_A Glycerol dehydrogenase; 67.2 7.7 0.00026 39.5 6.2 47 229-280 73-119 (370)
62 3miz_A Putative transcriptiona 67.1 11 0.00038 35.8 7.0 121 152-312 12-139 (301)
63 3brq_A HTH-type transcriptiona 67.0 80 0.0027 29.2 15.6 122 152-313 18-148 (296)
64 8abp_A L-arabinose-binding pro 65.4 53 0.0018 30.8 11.5 110 153-300 2-122 (306)
65 2h0a_A TTHA0807, transcription 65.0 23 0.00078 32.9 8.6 117 155-311 1-121 (276)
66 3lp6_A Phosphoribosylaminoimid 64.0 29 0.00099 32.5 8.9 104 150-301 4-109 (174)
67 2vk2_A YTFQ, ABC transporter p 63.6 37 0.0013 32.3 10.0 120 153-311 2-135 (306)
68 1qpz_A PURA, protein (purine n 62.7 1.1E+02 0.0039 29.4 14.4 121 152-312 57-185 (340)
69 2o20_A Catabolite control prot 61.5 1.2E+02 0.004 29.2 14.9 122 152-313 62-189 (332)
70 3ox4_A Alcohol dehydrogenase 2 61.0 13 0.00046 38.1 6.7 60 229-288 75-147 (383)
71 3o1i_D Periplasmic protein TOR 60.8 29 0.00099 32.6 8.6 123 152-312 4-144 (304)
72 1tjy_A Sugar transport protein 60.5 1E+02 0.0035 29.5 12.7 121 154-311 4-135 (316)
73 1rrm_A Lactaldehyde reductase; 60.2 14 0.00049 37.7 6.7 60 229-288 75-149 (386)
74 3hl0_A Maleylacetate reductase 59.7 12 0.00042 38.1 6.1 52 229-286 74-125 (353)
75 3iv7_A Alcohol dehydrogenase I 59.2 12 0.0004 38.5 5.8 52 229-286 75-126 (364)
76 3jzd_A Iron-containing alcohol 58.7 11 0.00036 38.7 5.4 48 229-281 76-123 (358)
77 1oj7_A Hypothetical oxidoreduc 58.4 11 0.00036 39.1 5.4 57 229-285 93-165 (408)
78 2iks_A DNA-binding transcripti 58.0 61 0.0021 30.4 10.4 121 152-311 19-145 (293)
79 3g85_A Transcriptional regulat 57.2 18 0.0006 34.0 6.3 117 152-311 10-134 (289)
80 3uhj_A Probable glycerol dehyd 57.0 16 0.00055 37.8 6.5 52 229-285 93-144 (387)
81 3trh_A Phosphoribosylaminoimid 55.2 17 0.00058 33.9 5.6 99 155-301 8-108 (169)
82 3hs3_A Ribose operon repressor 54.2 21 0.00073 33.5 6.4 114 152-311 9-129 (277)
83 2x7x_A Sensor protein; transfe 54.2 59 0.002 31.3 9.7 120 153-311 6-135 (325)
84 3gyb_A Transcriptional regulat 52.3 1.2E+02 0.0042 27.9 11.4 118 152-313 4-127 (280)
85 3bfj_A 1,3-propanediol oxidore 52.1 20 0.0007 36.5 6.3 58 229-286 79-149 (387)
86 3s40_A Diacylglycerol kinase; 51.9 10 0.00036 37.4 3.9 53 230-286 52-104 (304)
87 1o2d_A Alcohol dehydrogenase, 51.9 11 0.00038 38.4 4.3 54 229-284 85-153 (371)
88 3l8m_A Probable thiamine pyrop 51.7 42 0.0014 31.7 8.0 68 186-254 23-101 (212)
89 3oow_A Phosphoribosylaminoimid 51.7 17 0.00058 33.8 5.0 92 155-289 7-100 (166)
90 4grd_A N5-CAIR mutase, phospho 51.4 16 0.00055 34.2 4.8 92 155-289 14-107 (173)
91 1mgp_A Hypothetical protein TM 51.1 15 0.00053 37.0 5.1 154 145-332 18-179 (313)
92 2hsg_A Glucose-resistance amyl 49.4 51 0.0018 31.7 8.4 119 153-311 60-184 (332)
93 3brs_A Periplasmic binding pro 49.3 60 0.002 30.2 8.7 123 152-311 4-138 (289)
94 3lkb_A Probable branched-chain 48.5 36 0.0012 33.4 7.3 62 215-279 168-232 (392)
95 1vlj_A NADH-dependent butanol 48.4 19 0.00064 37.3 5.3 58 229-286 88-158 (407)
96 2qu7_A Putative transcriptiona 48.4 35 0.0012 32.0 6.8 117 152-311 7-129 (288)
97 3s4y_A Thiamin pyrophosphokina 48.3 61 0.0021 31.5 8.7 92 153-254 20-134 (247)
98 3gbv_A Putative LACI-family tr 48.0 27 0.00093 32.7 6.0 125 152-311 7-142 (304)
99 2dri_A D-ribose-binding protei 46.5 1.7E+02 0.006 26.9 11.4 120 154-311 2-130 (271)
100 3s99_A Basic membrane lipoprot 46.2 2E+02 0.0068 29.0 12.5 126 150-311 23-156 (356)
101 3rf7_A Iron-containing alcohol 46.1 25 0.00084 36.3 5.8 60 229-288 93-168 (375)
102 3kuu_A Phosphoribosylaminoimid 45.4 20 0.00069 33.6 4.4 100 154-301 13-114 (174)
103 1jx6_A LUXP protein; protein-l 45.2 1.8E+02 0.0062 27.7 11.6 122 152-311 42-182 (342)
104 3clh_A 3-dehydroquinate syntha 44.0 26 0.00088 35.4 5.5 50 229-281 69-121 (343)
105 1sg6_A Pentafunctional AROM po 43.8 24 0.00082 36.3 5.3 50 229-281 87-141 (393)
106 1byk_A Protein (trehalose oper 43.6 1.9E+02 0.0064 26.2 13.0 112 154-311 3-122 (255)
107 1xah_A Sadhqs, 3-dehydroquinat 43.2 23 0.00079 35.8 5.0 50 229-281 74-126 (354)
108 3ctp_A Periplasmic binding pro 42.9 2E+02 0.0068 27.5 11.5 117 152-312 59-180 (330)
109 3nav_A Tryptophan synthase alp 41.0 2.6E+02 0.0088 27.4 12.0 49 231-279 7-57 (271)
110 2qip_A Protein of unknown func 40.9 42 0.0014 30.1 5.8 50 229-281 94-145 (165)
111 3s81_A Putative aspartate race 40.7 45 0.0015 32.7 6.4 47 229-281 86-133 (268)
112 2xdq_B Light-independent proto 40.3 3.4E+02 0.012 28.7 13.7 139 231-384 77-241 (511)
113 1j0a_A 1-aminocyclopropane-1-c 39.6 2.6E+02 0.0088 27.4 12.0 70 233-314 60-129 (325)
114 1jye_A Lactose operon represso 39.5 1.9E+02 0.0066 27.9 10.9 120 153-311 61-186 (349)
115 3apt_A Methylenetetrahydrofola 39.4 26 0.0009 35.1 4.6 102 224-333 79-197 (310)
116 3nbm_A PTS system, lactose-spe 39.4 66 0.0022 27.4 6.5 73 246-341 11-84 (108)
117 3fst_A 5,10-methylenetetrahydr 39.0 29 0.00098 34.9 4.8 93 228-328 96-196 (304)
118 3cqj_A L-ribulose-5-phosphate 38.5 2.6E+02 0.0087 26.3 13.8 64 226-289 27-99 (295)
119 1o4v_A Phosphoribosylaminoimid 38.3 29 0.001 32.7 4.4 61 221-289 47-108 (183)
120 3ors_A N5-carboxyaminoimidazol 38.0 30 0.001 32.1 4.3 94 153-289 3-98 (163)
121 3qbe_A 3-dehydroquinate syntha 38.0 39 0.0013 34.8 5.7 50 229-281 87-139 (368)
122 1kq3_A Glycerol dehydrogenase; 37.7 18 0.00061 36.9 3.1 46 229-280 82-127 (376)
123 3td9_A Branched chain amino ac 37.3 97 0.0033 29.9 8.3 62 215-279 175-238 (366)
124 1gud_A ALBP, D-allose-binding 36.9 1.8E+02 0.0062 27.1 10.0 121 154-312 2-141 (288)
125 2lnd_A De novo designed protei 36.9 43 0.0015 27.8 4.6 59 215-274 24-82 (112)
126 3ce9_A Glycerol dehydrogenase; 36.6 18 0.00062 36.4 2.9 54 229-288 76-129 (354)
127 4d9b_A D-cysteine desulfhydras 36.4 1.3E+02 0.0045 29.9 9.3 104 232-345 70-174 (342)
128 3tak_A DHDPS, dihydrodipicolin 36.2 2.4E+02 0.0081 27.6 11.0 102 231-340 24-132 (291)
129 3ipc_A ABC transporter, substr 35.8 48 0.0016 31.9 5.8 61 215-278 163-226 (356)
130 2nrr_A Uvrabc system protein C 35.2 47 0.0016 30.6 5.1 49 228-279 60-113 (159)
131 3guv_A Site-specific recombina 35.1 1.9E+02 0.0063 25.5 9.2 82 258-345 28-115 (167)
132 1ta9_A Glycerol dehydrogenase; 34.9 21 0.00071 37.7 3.1 45 230-280 134-178 (450)
133 1x60_A Sporulation-specific N- 34.3 53 0.0018 25.5 4.8 51 222-272 14-73 (79)
134 1ujn_A Dehydroquinate synthase 34.1 44 0.0015 33.8 5.3 50 229-281 68-120 (348)
135 3okf_A 3-dehydroquinate syntha 33.0 48 0.0016 34.5 5.5 50 229-281 107-159 (390)
136 1vdr_A DHFR, dihydrofolate red 32.5 20 0.00067 32.2 2.2 49 230-285 81-129 (162)
137 2fn9_A Ribose ABC transporter, 32.4 3E+02 0.01 25.3 15.1 111 154-302 3-121 (290)
138 1uta_A FTSN, MSGA, cell divisi 32.1 46 0.0016 26.2 4.1 52 223-274 15-75 (81)
139 2h3h_A Sugar ABC transporter, 32.0 3.2E+02 0.011 25.6 14.8 78 231-312 46-131 (313)
140 3flu_A DHDPS, dihydrodipicolin 31.7 3.2E+02 0.011 26.7 11.1 103 231-341 30-139 (297)
141 2ioy_A Periplasmic sugar-bindi 31.7 3.1E+02 0.011 25.3 14.1 121 154-312 2-131 (283)
142 3eaf_A ABC transporter, substr 31.1 1.3E+02 0.0044 29.5 8.1 105 166-278 122-232 (391)
143 2gru_A 2-deoxy-scyllo-inosose 31.1 46 0.0016 33.9 4.9 50 229-281 78-130 (368)
144 2fqx_A Membrane lipoprotein TM 30.4 3.7E+02 0.013 25.8 13.9 24 229-252 49-72 (318)
145 2omk_A Hypothetical protein; s 30.3 1.4E+02 0.0047 28.7 7.9 105 157-272 34-153 (231)
146 3jvd_A Transcriptional regulat 29.9 3.8E+02 0.013 25.7 16.6 113 153-311 64-181 (333)
147 1u11_A PURE (N5-carboxyaminoim 29.1 51 0.0017 31.0 4.4 86 155-282 23-110 (182)
148 3lm8_A Thiamine pyrophosphokin 29.1 83 0.0028 30.0 6.0 79 186-264 26-120 (222)
149 3sho_A Transcriptional regulat 29.0 2.9E+02 0.01 24.1 11.2 95 229-343 27-122 (187)
150 1iv0_A Hypothetical protein; r 28.7 45 0.0015 27.9 3.6 30 257-286 39-68 (98)
151 1cz3_A Dihydrofolate reductase 28.5 28 0.00096 31.2 2.5 48 229-283 80-129 (168)
152 3l21_A DHDPS, dihydrodipicolin 28.4 4E+02 0.014 26.2 11.2 102 231-340 38-146 (304)
153 1xmp_A PURE, phosphoribosylami 28.1 45 0.0015 31.1 3.8 55 221-282 45-100 (170)
154 2nrt_A Uvrabc system protein C 28.1 72 0.0025 30.8 5.4 49 228-279 65-118 (220)
155 3m5v_A DHDPS, dihydrodipicolin 27.9 3.6E+02 0.012 26.4 10.7 102 231-340 30-139 (301)
156 3bvp_A INT, TP901-1 integrase; 27.8 1.2E+02 0.0042 25.9 6.5 84 257-345 26-112 (138)
157 4b4k_A N5-carboxyaminoimidazol 27.7 56 0.0019 30.7 4.4 91 156-289 25-117 (181)
158 3mjf_A Phosphoribosylamine--gl 27.3 95 0.0033 31.9 6.6 95 152-276 2-96 (431)
159 3jr7_A Uncharacterized EGV fam 26.9 2.7E+02 0.0092 27.5 9.6 107 204-333 60-173 (298)
160 3dz1_A Dihydrodipicolinate syn 25.9 3.6E+02 0.012 26.6 10.4 94 231-333 31-130 (313)
161 2zvr_A Uncharacterized protein 25.9 3.8E+02 0.013 25.1 10.2 48 230-277 42-89 (290)
162 1usg_A Leucine-specific bindin 25.8 68 0.0023 30.5 4.9 47 229-278 180-226 (346)
163 2pn1_A Carbamoylphosphate synt 25.6 4.4E+02 0.015 25.1 11.4 40 230-270 60-99 (331)
164 3vnd_A TSA, tryptophan synthas 25.3 4.8E+02 0.016 25.4 11.6 36 304-345 123-159 (267)
165 3hut_A Putative branched-chain 25.1 4.4E+02 0.015 24.9 11.9 158 150-339 1-171 (358)
166 3lp8_A Phosphoribosylamine-gly 25.0 1.9E+02 0.0065 29.8 8.4 95 150-276 18-112 (442)
167 3igs_A N-acetylmannosamine-6-p 24.7 3.5E+02 0.012 25.5 9.7 90 209-311 9-108 (232)
168 3qfe_A Putative dihydrodipicol 24.7 3.9E+02 0.013 26.5 10.3 103 231-341 34-145 (318)
169 3nkl_A UDP-D-quinovosamine 4-d 24.4 1E+02 0.0034 25.9 5.2 98 152-279 3-100 (141)
170 3lkv_A Uncharacterized conserv 24.2 1.8E+02 0.0061 27.9 7.6 94 150-277 5-98 (302)
171 2x5n_A SPRPN10, 26S proteasome 23.8 1.2E+02 0.004 27.9 5.9 50 230-279 89-145 (192)
172 3u7r_A NADPH-dependent FMN red 23.7 3.6E+02 0.012 24.7 9.2 37 283-319 41-84 (190)
173 1f2d_A 1-aminocyclopropane-1-c 22.9 5.5E+02 0.019 25.2 12.4 76 234-314 58-136 (341)
174 3h5d_A DHDPS, dihydrodipicolin 22.5 5E+02 0.017 25.6 10.6 104 230-340 29-139 (311)
175 2h31_A Multifunctional protein 22.4 53 0.0018 34.7 3.5 53 221-280 299-353 (425)
176 3s2u_A UDP-N-acetylglucosamine 22.4 1.4E+02 0.0049 29.6 6.6 108 214-340 183-304 (365)
177 1g5t_A COB(I)alamin adenosyltr 22.1 1.7E+02 0.0058 27.4 6.7 102 243-346 28-164 (196)
178 3qze_A DHDPS, dihydrodipicolin 22.0 5.1E+02 0.017 25.6 10.6 103 231-341 46-155 (314)
179 3nyi_A FAT acid-binding protei 21.8 1.8E+02 0.0063 28.6 7.2 109 204-333 44-161 (297)
180 3cs3_A Sugar-binding transcrip 21.7 4.6E+02 0.016 23.9 14.2 114 152-311 7-125 (277)
181 3gh1_A Predicted nucleotide-bi 21.7 1.9E+02 0.0065 30.9 7.5 21 244-264 249-270 (462)
182 3aek_B Light-independent proto 21.6 5E+02 0.017 27.6 11.1 136 232-384 75-228 (525)
183 3rg8_A Phosphoribosylaminoimid 21.3 1.1E+02 0.0037 28.2 4.9 83 155-279 4-89 (159)
184 3h5t_A Transcriptional regulat 21.2 1.6E+02 0.0054 28.7 6.6 76 230-311 116-196 (366)
185 3kws_A Putative sugar isomeras 21.2 3.2E+02 0.011 25.5 8.6 58 229-289 38-95 (287)
186 2ywx_A Phosphoribosylaminoimid 20.8 80 0.0028 29.0 3.9 10 270-279 73-82 (157)
187 3na8_A Putative dihydrodipicol 20.8 4.7E+02 0.016 25.9 10.0 102 231-340 47-155 (315)
188 1tzj_A ACC deaminase, 1-aminoc 20.6 5.9E+02 0.02 24.7 11.4 74 235-313 59-132 (338)
189 2hqb_A Transcriptional activat 20.5 5.4E+02 0.019 24.3 11.6 76 230-310 51-132 (296)
190 1nu0_A Hypothetical protein YQ 20.4 75 0.0026 28.2 3.6 25 261-285 45-69 (138)
191 2r8w_A AGR_C_1641P; APC7498, d 20.2 6.5E+02 0.022 25.0 11.4 102 231-340 57-165 (332)
192 4eyg_A Twin-arginine transloca 20.1 90 0.0031 30.0 4.5 46 229-277 181-229 (368)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1.8e-91 Score=749.35 Aligned_cols=388 Identities=36% Similarity=0.599 Sum_probs=353.8
Q ss_pred CCCcccccCCCcccccCCCC--CCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-------ccccccccCCccc
Q 009804 76 GPAGYVLEDVPHLSDYIPDL--PTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-------RGTHFRRAGPRQK 146 (525)
Q Consensus 76 ~~~~~~~~~v~~l~~~~p~~--p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-------~~~~f~~aGpr~~ 146 (525)
...-+.|++|+.+.-.+|.| |++||||..++. ..+||+++|+|+.++....+.. +..+|++||||++
T Consensus 15 ~~~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~ 90 (487)
T 2hig_A 15 KAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSR 90 (487)
T ss_dssp ECTTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSE
T ss_pred ccccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcce
Confidence 34568899999998888877 889999976554 6889999999999877643311 2347999999999
Q ss_pred eeccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhcc---CCeEeCChhhhhcccccCccccc
Q 009804 147 VYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYA---KNTIALTPKGVNDIHKRGGTVLG 223 (525)
Q Consensus 147 ~~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~---~~~i~Lt~~~v~~i~~~GGtiLG 223 (525)
+||+|+.+||||+||||+|||||++||++++.+...|++.+||||++||+||++ +++++|+|++|++|+++|||+||
T Consensus 91 i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLG 170 (487)
T 2hig_A 91 IHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILG 170 (487)
T ss_dssp ESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSC
T ss_pred eeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeec
Confidence 999999999999999999999999999999999876786799999999999964 69999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc--------------
Q 009804 224 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL-------------- 289 (525)
Q Consensus 224 SsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD-------------- 289 (525)
|+|++++.++++++|++++||+||+||||||+++|++|+++++++|++|+||||||||||||++||
T Consensus 171 TsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~e 250 (487)
T 2hig_A 171 SSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQ 250 (487)
T ss_dssp CCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCC
Q 009804 290 ------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGA 345 (525)
Q Consensus 290 ------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa 345 (525)
+|||||++||||+++||+|||||+||+++ +++++|++|+++++|+|||||||+
T Consensus 251 aId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGa 327 (487)
T 2hig_A 251 AIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGF 327 (487)
T ss_dssp HHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTT
T ss_pred HHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCC
Confidence 99999999999995599999999999998 899999999998999999999999
Q ss_pred CCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceee---EeeEeCCCccccCCCCCcchHHHHHHHHHHH
Q 009804 346 GQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPI---NLKYIDPTYMIRAVPSNASDNVYCTLLAQSC 422 (525)
Q Consensus 346 ~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~---~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~A 422 (525)
++.++.. ...+|++||++|++++.+|+++|+++++. .+..+ ++|+++|||+|||++||++||+||++||+.|
T Consensus 328 g~~~~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~-~g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~A 402 (487)
T 2hig_A 328 GQDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKA-NKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLA 402 (487)
T ss_dssp TGGGCCC------CBCTTSCBCCCCHHHHHHHHHHHHHHT-TTTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred ccccccc----ccccccccCcchhHHHHHHHHHHHHHHhh-cCccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHH
Confidence 8765432 24589999999999999999999999852 12223 7799999999999999999999999999999
Q ss_pred HHHHHcCCCceEEEEECCeEEEechhHHhhhcCcCCcchHHHHHHHhccCCCC
Q 009804 423 VHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPS 475 (525)
Q Consensus 423 V~~a~aG~tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~l~~tgqp~ 475 (525)
|+++++|++|+|||+++++++++||+++++..|+++++++||++++..++|+.
T Consensus 403 V~~l~~G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~ 455 (487)
T 2hig_A 403 VHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG 455 (487)
T ss_dssp HHHHHTTEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred HHHHHcCCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999986
No 2
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1.4e-87 Score=710.64 Aligned_cols=343 Identities=17% Similarity=0.239 Sum_probs=307.8
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCC--eEEEEEccchhhhccCCeEeCChh---hhhcccccCcccccccCC
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGV--KRVLGIDGGYRGFYAKNTIALTPK---GVNDIHKRGGTVLGTSRG 227 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~--~~V~Gi~~G~~GL~~~~~i~Lt~~---~v~~i~~~GGtiLGSsR~ 227 (525)
..||+|+||||+|||||++||++++.+.. ++. .+||||++||+||+++++++|+.. ++++|+++|||+|||||+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~-~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARK-QSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHH-HCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHH-cCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCC
Confidence 46999999999999999999999999975 552 399999999999999999998555 899999999999999998
Q ss_pred CC--------cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc----------
Q 009804 228 GH--------DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL---------- 289 (525)
Q Consensus 228 ~~--------d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD---------- 289 (525)
++ ++++++++|++++||+||+||||||+++|++|+++++++|++|+||||||||||||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 63 478999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------hhhHHHHHHhhhc----CCccEEEcCCCCCCccchhhHHHHHHHHHHcC
Q 009804 290 -------------------------------LTWFIAMYATLAS----RDVDCCLIPESPFYLEGHGGLFEYIETRLKEN 334 (525)
Q Consensus 290 -------------------------------~sG~IAl~aaLAs----~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~ 334 (525)
||||||+++|||+ ++||+|||||+||+++ ++++.|+++++++
T Consensus 162 ~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~ 238 (419)
T 3hno_A 162 YIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKF 238 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhC
Confidence 9999999999994 3799999999999988 8999999999988
Q ss_pred CcEEEEEecCCCC---cchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCC--CCc
Q 009804 335 GHMVIVIAEGAGQ---DLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVP--SNA 409 (525)
Q Consensus 335 g~~VIVVAEGa~~---~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~--psa 409 (525)
+|+|||||||+.+ +++.+ ...+|+|||++|++++.+|+++|+++++. .+|+++|||+|||++ ||+
T Consensus 239 ~~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~g~------~~R~~~lGh~QRgg~p~ps~ 308 (419)
T 3hno_A 239 GYCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGLGL------KYHWGVADYLQRAARHIASK 308 (419)
T ss_dssp SCEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHHCC------CEEEEECTHHHHSCGGGCBH
T ss_pred CCEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHhCC------ceEEcccchhhccCCCCCCH
Confidence 9999999999986 34433 34689999999999999999999999874 358899999999999 899
Q ss_pred chHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEEEechhHHhhhcCcCCcchHHHHHHHhccCCCCCcCcccc
Q 009804 410 SDNVYCTLLAQSCVHGAMAGYTGYTSGLVNG-------RQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDV 482 (525)
Q Consensus 410 ~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~-------~~~~vPL~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~~ 482 (525)
+||++|++||..||+++++|++|+||+++++ +++.+||+++++.+|+| +++|++++++
T Consensus 309 ~Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v---------------~~~~i~~~g~ 373 (419)
T 3hno_A 309 TDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMM---------------PENFITEDGF 373 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCC---------------CGGGBCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCC---------------CHHHHhhccC
Confidence 9999999999999999999999999999987 68999999999999999 8899999999
Q ss_pred cchHHHHHHhhhhhccCCCCCCCCCCCCCcccch-hhhhhhhhC
Q 009804 483 IEDKKEEELLTQIVNEDKKEEELPTKIPDISTED-NLVKKEIAA 525 (525)
Q Consensus 483 ~~~~~~~~~~~pl~~g~~~~~~~~~g~p~~~~~~-~~~~~~~~~ 525 (525)
++|+++.+|++|||+||.+||| .||||+|..++ .+|+|||++
T Consensus 374 ~vt~~~~~y~~pli~ge~~~~~-~~glp~~~~~~~~~~~~~~~~ 416 (419)
T 3hno_A 374 GITDLCREYLAPLIEGEDYPPY-KDGLPDYVRLKNVAVPKKLSG 416 (419)
T ss_dssp SBCHHHHHHHGGGGCSBCCCCE-ETTEECCCCCCCCBCCCCSCC
T ss_pred CccHHHHHHHHHHhCCCCCccc-cCCCCceeeecccccccccCC
Confidence 9999999999999999999999 99999999999 999999985
No 3
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=3e-74 Score=626.12 Aligned_cols=393 Identities=20% Similarity=0.281 Sum_probs=317.2
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-----ccccccccCCccceeccCCCeEEEEEcCCC
Q 009804 89 SDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-----RGTHFRRAGPRQKVYFESDEVYACIVTCGG 163 (525)
Q Consensus 89 ~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-----~~~~f~~aGpr~~~~f~~~~~~iaIvtsGG 163 (525)
..|.|.||.+... ....++......+..+..+..+++.|| +..+|.++++++. .+..+||||+||||
T Consensus 11 ~~~~p~lp~~l~~-----~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~igIltsGG 82 (555)
T 2f48_A 11 QKYIPKLPNILKK-----DFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---FSKALNIGIILSGG 82 (555)
T ss_dssp TTCCCCCCGGGGS-----CGGGEEEEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCCS---CCSCCEEEEEEBSS
T ss_pred hcCCCCCCHHHhC-----CccceeeecCCcccCccCHHHHHHhCccccCCCcEEEecCCcccc---cCCCcEEEEECcCC
Confidence 4688999887643 222366778888888888777777776 5677888877522 35678999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCc-ccccccCCCC----cHHHHHHHH
Q 009804 164 LCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG-TVLGTSRGGH----DTSKIVDSI 238 (525)
Q Consensus 164 ~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GG-tiLGSsR~~~----d~~~iv~~l 238 (525)
+|||||+|||++++++...+++.+||||++||+||+++++++|+|++|++|+++|| |+|||+|++. ++++++++|
T Consensus 83 daPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l 162 (555)
T 2f48_A 83 PAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVA 162 (555)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999986666668999999999999999999999999999999999 7999999963 588999999
Q ss_pred HHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC--c---------------------------
Q 009804 239 QDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP--L--------------------------- 289 (525)
Q Consensus 239 ~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt--D--------------------------- 289 (525)
++++||+||+||||||+++|++|+++++++++.|+||||||||||||++| |
T Consensus 163 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~~ 242 (555)
T 2f48_A 163 KENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTK 242 (555)
T ss_dssp HHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999887 7
Q ss_pred -----------hhhHHHHHHhhhcCCccEEEcCCCC----CCccc-hhhHHHHHHHHHHc-CCcEEEEEecCCCCc----
Q 009804 290 -----------LTWFIAMYATLASRDVDCCLIPESP----FYLEG-HGGLFEYIETRLKE-NGHMVIVIAEGAGQD---- 348 (525)
Q Consensus 290 -----------~sG~IAl~aaLAs~~ad~iLIPE~p----f~leg-~~~lle~I~~rl~~-~g~~VIVVAEGa~~~---- 348 (525)
+|||||++||||+ +||+|||||++ +++++ ...+++.|++|.++ ++|+|||||||+...
T Consensus 243 ~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~~~ 321 (555)
T 2f48_A 243 KYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEV 321 (555)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHHH
T ss_pred CcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccchH
Confidence 9999999999999 79999999986 56542 23556666666655 699999999999531
Q ss_pred --chh-----------------------------------------HHhhhh-----ccccccCCccchhH--HHHHHHH
Q 009804 349 --LLA-----------------------------------------ESIRSA-----TQQDASGNKLLQDV--GLWLSQK 378 (525)
Q Consensus 349 --~~~-----------------------------------------~~~~~~-----~~~DasGn~~L~di--g~~La~~ 378 (525)
++. +.+... .++|+|||++|+++ +++|+++
T Consensus 322 ~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~~ 401 (555)
T 2f48_A 322 KSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEM 401 (555)
T ss_dssp HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHHH
Confidence 100 001111 35899999999998 4555555
Q ss_pred HHHHhCCC-----CceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEEec
Q 009804 379 IKDHFAKE-----KKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGR-------QTYIP 446 (525)
Q Consensus 379 Ik~~~~~~-----~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~tg~mVgi~n~~-------~~~vP 446 (525)
|+++++.+ ....+..+...|||+|||+.||++||+||++||+.||+++++|+||+||+++|++ +..+|
T Consensus 402 v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~vP 481 (555)
T 2f48_A 402 IQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 481 (555)
T ss_dssp HHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEEE
T ss_pred HHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEeee
Confidence 55444311 1112455777899999999999999999999999999999999999999999976 78999
Q ss_pred hhHHhhhc------------CcCCcchHHHHHHHhccCCCCCcCcccccchHHHHHHhhhh-hccC
Q 009804 447 FYRIIEKQ------------HHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQI-VNED 499 (525)
Q Consensus 447 L~~v~~~~------------k~v~~~~~~w~~~l~~tgqp~f~~~~~~~~~~~~~~~~~pl-~~g~ 499 (525)
|.++++.+ +.|+.++..|..+. .....|.-+++++++.|+ +.|.
T Consensus 482 l~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~---------~~r~~w~~~d~y~~pGpiQ~~g~ 538 (555)
T 2f48_A 482 LTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFV---------KNRDKWALNNLYLYPGPVQYFGS 538 (555)
T ss_dssp GGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHH---------HHHHHHHHSCCCCCCCCCCCSSC
T ss_pred HHHHhhhhhhcCccccceeeeeeCCCCHHHHHHH---------HHHHHhhhcCcccCCCCEeecCc
Confidence 99999875 33555555553322 234667777788888887 6665
No 4
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=7.4e-73 Score=579.83 Aligned_cols=271 Identities=27% Similarity=0.374 Sum_probs=250.2
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC----
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH---- 229 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~---- 229 (525)
+||||+||||||||||++||++++.+.. ++ .+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~g-~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-NG-LEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-TT-CEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 5899999999999999999999999974 66 59999999999999999999999999999999999999999974
Q ss_pred -cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804 230 -DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------- 289 (525)
Q Consensus 230 -d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------- 289 (525)
++++++++|++++||+||+||||||+++|++|+++ + ++|||||||||||+++||
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~----~--i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH----G--FNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT----T--CCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh----C--CCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999874 4 789999999999999999
Q ss_pred ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804 290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL 350 (525)
Q Consensus 290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~ 350 (525)
||||||++++||+ +||+|||||.||+++ ++++.|++++++ ++|+|||||||+.+
T Consensus 154 ~~ta~s~~rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~--- 226 (319)
T 1zxx_A 154 RDTASSHHRVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT--- 226 (319)
T ss_dssp HHHHHHTTCEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC---
T ss_pred HHHHhcCCCEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh---
Confidence 9999999999999 799999999999988 899999999965 79999999999843
Q ss_pred hHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009804 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY 430 (525)
Q Consensus 351 ~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~ 430 (525)
+.+|+++|+++++ +++|+++|||+|||++||++||+||++||+.||+++++|+
T Consensus 227 ---------------------~~~l~~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 279 (319)
T 1zxx_A 227 ---------------------ADQFMAELKKYGD------FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGK 279 (319)
T ss_dssp ---------------------HHHHHHHHHHSSC------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHhhC------ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678999988755 3458899999999999999999999999999999999999
Q ss_pred CceEEEEECCeEEEechhHHhhhcCcCCcchHHHHH
Q 009804 431 TGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWAR 466 (525)
Q Consensus 431 tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~ 466 (525)
+|+||+++|++++++||+++++.+|+++++.....+
T Consensus 280 ~g~mv~~~~~~~~~~pl~~~~~~~k~~~~~~~~~~~ 315 (319)
T 1zxx_A 280 GGLAVGIENGKVTSHDILDLFDESHRGDYDLLKLNA 315 (319)
T ss_dssp CSEEEEEETTEEEEEEHHHHTTCCCCCCTHHHHHHH
T ss_pred CCEEEEEECCEEEEEEHHHHHhcCCCCCHHHHHHHH
Confidence 999999999999999999999999988665443333
No 5
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=1.1e-72 Score=578.85 Aligned_cols=272 Identities=26% Similarity=0.360 Sum_probs=250.5
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC----
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH---- 229 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~---- 229 (525)
+||||+||||||||||++||++++.+.. ++ .+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~g-~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-EG-LEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-TT-CEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 5999999999999999999999999875 66 69999999999999999999999999999999999999999963
Q ss_pred -cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804 230 -DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------- 289 (525)
Q Consensus 230 -d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------- 289 (525)
++++++++|++++||+||+||||||+++|++|+++ .++||||||||||||++||
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999873 4789999999999999999
Q ss_pred ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804 290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL 350 (525)
Q Consensus 290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~ 350 (525)
||||||++++||+ +||+|||||.||+++ +++++|++|+++ ++|+|||||||+..
T Consensus 155 ~~ta~s~~rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~--- 227 (320)
T 1pfk_A 155 RDTSSSHQRISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD--- 227 (320)
T ss_dssp HHHHHHHTCEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSSC---
T ss_pred HHHHhcCCCEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcch---
Confidence 9999999999999 799999999999988 899999999865 79999999999841
Q ss_pred hHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009804 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY 430 (525)
Q Consensus 351 ~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~ 430 (525)
+.+|+++|+++++. .+|+++|||+|||++||++||+||++||+.||+++++|+
T Consensus 228 ---------------------~~~la~~i~~~~~~------~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 280 (320)
T 1pfk_A 228 ---------------------VDELAHFIEKETGR------ETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGY 280 (320)
T ss_dssp ---------------------HHHHHHHHHHHHSS------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------------HHHHHHHHHHHhCC------eEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 56789999988653 458899999999999999999999999999999999999
Q ss_pred CceEEEEECCeEEEechhHHh-hhcCcCCcchHHHHHH
Q 009804 431 TGYTSGLVNGRQTYIPFYRII-EKQHHVVITDRMWARL 467 (525)
Q Consensus 431 tg~mVgi~n~~~~~vPL~~v~-~~~k~v~~~~~~w~~~ 467 (525)
+|+||+++|++++++||++++ +.+|+++++...+.+.
T Consensus 281 ~g~mv~~~~~~~~~~pl~~~~~~~~k~~~~~~~~~~~~ 318 (320)
T 1pfk_A 281 GGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKK 318 (320)
T ss_dssp CSEEEEEETTEEEEEEHHHHHHHCCCCCCHHHHHHHHH
T ss_pred CCEEEEEECCEEEEEEHHHHHhhCCCCCCHHHHHHHHH
Confidence 999999999999999999999 8888887554444443
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=3.2e-72 Score=575.64 Aligned_cols=273 Identities=29% Similarity=0.432 Sum_probs=250.3
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-----
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG----- 228 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~----- 228 (525)
+||||+||||+|||||++||++++.+.+ ++ .+||||++||+||+++++++|+++++++|+++|||+|||||++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~-~g-~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIY-HD-VEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHH-TT-CEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 5899999999999999999999999874 56 6999999999999999999999999999999999999999985
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------- 289 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------- 289 (525)
+++++++++|++++||+||+||||||+++|++|+++ + ++||||||||||||++||
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~----~--i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----G--FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT----T--CCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc----C--CcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999864 4 679999999999999999
Q ss_pred ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804 290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL 350 (525)
Q Consensus 290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~ 350 (525)
||||||++++||+ ++|+|||||.||+++ ++++.|++++++ ++|+|||||||+.+
T Consensus 154 ~~~a~s~~rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~--- 226 (319)
T 4a3s_A 154 RDTATSHERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGS--- 226 (319)
T ss_dssp HHHHHHHTCEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCC---
T ss_pred HhhhhccCCeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCc---
Confidence 9999999999999 799999999999988 899999998887 69999999999965
Q ss_pred hHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009804 351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY 430 (525)
Q Consensus 351 ~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~ 430 (525)
..+++++++++++. .+|+++|||+|||++|+++||++|++||++||+++++|+
T Consensus 227 ---------------------~~~~~~~~~~~~g~------~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~ 279 (319)
T 4a3s_A 227 ---------------------GVEFGKRIEEETNL------ETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGK 279 (319)
T ss_dssp ---------------------HHHHHHHHHHHHCC------CEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ---------------------chHHHHHHHHhCCc------eEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 23567788887764 358899999999999999999999999999999999999
Q ss_pred CceEEEEECCeEEEechhHHhhhcCcCCcchHHHHHHH
Q 009804 431 TGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLL 468 (525)
Q Consensus 431 tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~l 468 (525)
+|+||+++|++++++||+++++.+|+++++....++.|
T Consensus 280 ~g~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~a~~l 317 (319)
T 4a3s_A 280 GGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKEL 317 (319)
T ss_dssp CSEEEEEETTEEEEEEHHHHSSSCCCCCHHHHHHHHHH
T ss_pred CCeEEEEECCEEEEEeHHHHHhccCCCCHHHHHHHHhc
Confidence 99999999999999999999999999987644444444
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.4e-68 Score=595.65 Aligned_cols=300 Identities=22% Similarity=0.336 Sum_probs=271.9
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccC--CeEeCChhhhhcccccCcccccccCCCC
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAK--NTIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~--~~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
...||||+||||||||||++||++|+.+.. ++ .+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~~-~g-~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGIF-TG-ARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHHH-TT-CEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHHH-CC-CEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 457999999999999999999999998864 45 6999999999999999 8999999999999999999999999973
Q ss_pred -----cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHH-----------------HHHcCCceeEEEeeccccCCCCC
Q 009804 230 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEE-----------------VRRRGLKVVVAGIPKTIDNDIPV 287 (525)
Q Consensus 230 -----d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~-----------------~~~~g~~i~VIgIPKTIDNDI~g 287 (525)
++++++++|++++||+||+||||||+++|+.|+++ ++++++.++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 47899999999999999999999999999988654 34556789999999999999999
Q ss_pred Cc-------------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHH
Q 009804 288 PL-------------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETR 330 (525)
Q Consensus 288 tD-------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~r 330 (525)
|| ||||||+++|||+ +||+|||||+||++++++.|++.|+++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~~ 250 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSHQRTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSET 250 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSSCCEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcCccEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHHH
Confidence 99 9999999999999 799999999999997777899999987
Q ss_pred HHc-CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCc
Q 009804 331 LKE-NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNA 409 (525)
Q Consensus 331 l~~-~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa 409 (525)
.++ ++|+|||||||+ +|++|+... +.+|+++|+++++. .+|+.+|||+|||++|++
T Consensus 251 ~~~gk~~~iVvVaEGa--------------~d~~G~~i~---~~~l~~~i~~~~g~------~~R~tvLGh~QRgg~Psa 307 (762)
T 3o8l_A 251 RTRGSRLNIIIVAEGA--------------IDRNGKPIT---SEGVKDLVVRRLGY------DTRVTVLGHVQRGGTPSA 307 (762)
T ss_dssp HHTTCSCCBBCEETTC--------------CCSSSCCCC---HHHHHHHHHHHTCC------CEEEECCCSSTTCSCCCH
T ss_pred HHcCCCceEEEEeCCc--------------cCCCCCCcH---HHHHHHHHHHHhCC------CcceeecCccccCCCCCh
Confidence 765 578999999999 366787665 57899999998864 347889999999999999
Q ss_pred chHHHHHHHHHHHHHHHHcCC---CceEEEEECCeEEEechhHHhhhcCcCCc--chHHHHHHHhccCCCCCcC
Q 009804 410 SDNVYCTLLAQSCVHGAMAGY---TGYTSGLVNGRQTYIPFYRIIEKQHHVVI--TDRMWARLLSSTNQPSFMN 478 (525)
Q Consensus 410 ~Dr~~a~~LG~~AV~~a~aG~---tg~mVgi~n~~~~~vPL~~v~~~~k~v~~--~~~~w~~~l~~tgqp~f~~ 478 (525)
+||++|++||.+||+++++|. +++||++++++++++||+++++..|.|++ +...|.+.+..+|+ +|..
T Consensus 308 ~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~-~f~~ 380 (762)
T 3o8l_A 308 FDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGR-SFMN 380 (762)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCc-hHHH
Confidence 999999999999999999999 89999999999999999999999998876 56789999999996 5654
No 8
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=3.9e-65 Score=569.69 Aligned_cols=289 Identities=19% Similarity=0.254 Sum_probs=253.7
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC--
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-- 228 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-- 228 (525)
.+++||||+||||||||||++||++|+.+.. ++ .+||||++||+||+++++++|+|++|++|+++|||+|||+|+.
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~~-~g-~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~ 475 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI-QG-NRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPK 475 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HT-CEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEECCCSG
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCCCCcH
Confidence 4568999999999999999999999999875 56 6999999999999999999999999999999999999999986
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC-CceeEEEeeccccCCCCCCc------------------
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG-LKVVVAGIPKTIDNDIPVPL------------------ 289 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g-~~i~VIgIPKTIDNDI~gtD------------------ 289 (525)
+++++++++|++++||+||+||||||+++|++|+++++++. +.|+||||||||||||++||
T Consensus 476 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~aid~ 555 (762)
T 3o8l_A 476 KSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDR 555 (762)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999988774 57999999999999999999
Q ss_pred --------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCc
Q 009804 290 --------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQD 348 (525)
Q Consensus 290 --------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~ 348 (525)
||||||++++||+ +||+|||||.||+++...+.++++.+|+++ ++++|||||||+...
T Consensus 556 i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEga~~~ 634 (762)
T 3o8l_A 556 IKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNEN 634 (762)
T ss_dssp HTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETTSCSS
T ss_pred HHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECCCCcc
Confidence 9999999999999 799999999999998433344556666665 478999999999764
Q ss_pred chhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHc
Q 009804 349 LLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMA 428 (525)
Q Consensus 349 ~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~a 428 (525)
+. ++++++.+++.- +. .+.+|..+|||+||||.|+++||++|++||.+||+++++
T Consensus 635 ~~---------------------~~~~~~~~~~~~--~~--~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~ 689 (762)
T 3o8l_A 635 YT---------------------TDFIFNLYSEEG--KG--IFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAG 689 (762)
T ss_dssp SC---------------------HHHHHHHHHHHT--TT--TCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ch---------------------HHHHHHHHHhhc--cC--CceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33 345666666541 11 245688999999999999999999999999999999999
Q ss_pred C---------------CCceEEEEECCeEEEechhHHhhh---cCcCCcchHHHHHHH
Q 009804 429 G---------------YTGYTSGLVNGRQTYIPFYRIIEK---QHHVVITDRMWARLL 468 (525)
Q Consensus 429 G---------------~tg~mVgi~n~~~~~vPL~~v~~~---~k~v~~~~~~w~~~l 468 (525)
| .+++|||+++++++++||+++.+. ++++ |+.+||.++.
T Consensus 690 g~~~~~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~-~~~~~w~~~~ 746 (762)
T 3o8l_A 690 KIKESYRNGRIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRI-PKEQWWLKLR 746 (762)
T ss_dssp HHHTTBCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTE-ESSCGGGGTH
T ss_pred CccccccccccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcC-CCCchHHhHH
Confidence 7 799999999999999999999874 2333 7888998654
No 9
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-65 Score=571.70 Aligned_cols=299 Identities=21% Similarity=0.322 Sum_probs=257.0
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccC--CeEeCChhhhhcccccCcccccccCCCC
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAK--NTIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~--~~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
++.||||+||||||||||++||++|+.+.. +| .+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~-~g-~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-FG-CDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH-TT-CEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 457999999999999999999999999974 66 5999999999999998 6999999999999999999999999963
Q ss_pred -----cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHH-------H----------HHcCCceeEEEeeccccCCCCC
Q 009804 230 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEE-------V----------RRRGLKVVVAGIPKTIDNDIPV 287 (525)
Q Consensus 230 -----d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~-------~----------~~~g~~i~VIgIPKTIDNDI~g 287 (525)
++.+++++|++++||+||+||||||+++|++|+++ + .+++..++||||||||||||++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 36789999999999999999999999999987643 2 2345678999999999999999
Q ss_pred Cc-------------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccc-hhhHHHHHHH
Q 009804 288 PL-------------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEG-HGGLFEYIET 329 (525)
Q Consensus 288 tD-------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg-~~~lle~I~~ 329 (525)
|| ||||||+++|||+ +||+|||||+||++++ ...+.+.+++
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~Sh~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i~~ 240 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKSHSRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQR 240 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhccCceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHHHH
Confidence 99 9999999999999 7999999999999973 2344444444
Q ss_pred HHHc-CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCC
Q 009804 330 RLKE-NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSN 408 (525)
Q Consensus 330 rl~~-~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~ps 408 (525)
+.++ ++|+|||||||+.+. .|+.. .+..++++|++ ++. .+|..+|||+|||++|+
T Consensus 241 ~~~~gk~~~IVvVaEGa~~~--------------~~~~~---~~~~~~~~i~~-~g~------~~R~tvLGh~QRGG~Ps 296 (787)
T 3o8o_A 241 HRSKGRRNNTIIVAEGALDD--------------QLNPV---TANDVKDALIE-LGL------DTKVTILGHVQRGGTAV 296 (787)
T ss_dssp HHHTTCCCEEEEEETTCBBT--------------TSCBC---CHHHHHHHHHH-HTC------CEEEEECGGGGTCSCCC
T ss_pred HHhcCCCceEEEEeCCCccc--------------cCcch---hHHHHHHHHHH-hCC------cceeeccCHhhcCCCCC
Confidence 4333 589999999999653 12221 14567788877 653 34778899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEEEechhHHhhhcCcCC--cchHHHHHHHhccCCCCCcC
Q 009804 409 ASDNVYCTLLAQSCVHGAMAGYT---GYTSGLVNGRQTYIPFYRIIEKQHHVV--ITDRMWARLLSSTNQPSFMN 478 (525)
Q Consensus 409 a~Dr~~a~~LG~~AV~~a~aG~t---g~mVgi~n~~~~~vPL~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~ 478 (525)
++||++|++||..||+++++|.+ |+|||+++++++++||++++...|.|. .+...|.+.++..| ++|..
T Consensus 297 a~DRilAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~ 370 (787)
T 3o8o_A 297 AHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLRD-TEFIE 370 (787)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-TTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhccC-HHHHH
Confidence 99999999999999999999997 799999999999999999999888886 56788999999987 57865
No 10
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-65 Score=567.52 Aligned_cols=299 Identities=20% Similarity=0.306 Sum_probs=257.1
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCC---eEeCChhhhhcccccCcccccccCCCC
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN---TIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~---~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
..||||+||||||||||++||++|+.+.. +| .+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~g-~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-KG-CRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-HT-CEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-CC-CEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 47999999999999999999999999975 67 59999999999999986 789999999999999999999999963
Q ss_pred -----cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHH-----------------HHHcCCceeEEEeeccccCCCCC
Q 009804 230 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEE-----------------VRRRGLKVVVAGIPKTIDNDIPV 287 (525)
Q Consensus 230 -----d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~-----------------~~~~g~~i~VIgIPKTIDNDI~g 287 (525)
++.+++++|++++||+||+||||||+++|++|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 36789999999999999999999999999988653 33456678999999999999999
Q ss_pred Cc-------------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccc-hhhHHHHHHH
Q 009804 288 PL-------------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEG-HGGLFEYIET 329 (525)
Q Consensus 288 tD-------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg-~~~lle~I~~ 329 (525)
|| ||||||+++|||+ +||+|||||.||++++ ...+++.+++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~~ 239 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSHSRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVSK 239 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhccCceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHHH
Confidence 99 9999999999999 7999999999999973 2234444444
Q ss_pred HHHc-CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCC
Q 009804 330 RLKE-NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSN 408 (525)
Q Consensus 330 rl~~-~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~ps 408 (525)
+.++ ++|+|||||||+.+. .|+.. .+.+|+++|+++++. .+|.++|||+|||++|+
T Consensus 240 ~~~~gk~~~IVvVaEGa~~~--------------~~~~~---~~~~l~~~i~~~~g~------~~R~tvLGh~QRGG~Ps 296 (766)
T 3o8o_B 240 HRSRGKRTTIVVVAEGAIAA--------------DLTPI---SPSDVHKVLVDRLGL------DTRITTLGHVQRGGTAV 296 (766)
T ss_dssp HHHTTCCCEEEEEETTCBCT--------------TSCBC---CHHHHHHHHHHTTCC------CEEEEECGGGGTCSCCC
T ss_pred HHhcCCCceEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhCC------ceeEcccChhhcCCCCC
Confidence 4333 589999999999653 12221 156888999887663 35788999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEEEechhHHhhhcCcCCc--chHHHHHHHhccCCCCCcC
Q 009804 409 ASDNVYCTLLAQSCVHGAMAGYT---GYTSGLVNGRQTYIPFYRIIEKQHHVVI--TDRMWARLLSSTNQPSFMN 478 (525)
Q Consensus 409 a~Dr~~a~~LG~~AV~~a~aG~t---g~mVgi~n~~~~~vPL~~v~~~~k~v~~--~~~~w~~~l~~tgqp~f~~ 478 (525)
++||++|++||..||+++++|.+ |+||++++++++++||++++...|.|.. +...|.+.++..| ++|..
T Consensus 297 a~DR~lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~ 370 (766)
T 3o8o_B 297 AYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSLRD-TEFIE 370 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-TTHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHccC-HHHHH
Confidence 99999999999999999999997 8999999999999999999988777743 3567888888887 47764
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.3e-64 Score=571.11 Aligned_cols=300 Identities=20% Similarity=0.312 Sum_probs=256.3
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccC--CeEeCChhhhhcccccCcccccccCCC
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAK--NTIALTPKGVNDIHKRGGTVLGTSRGG 228 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~--~~i~Lt~~~v~~i~~~GGtiLGSsR~~ 228 (525)
...+||||+||||+|||||++||++|+.+.. +| .+||||++||+||+++ ++++|+|++|++|+++|||+|||+|++
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~~-~G-~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~ 285 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGIF-YG-CKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCK 285 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHHH-TT-EEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCC
Confidence 4467999999999999999999999999874 67 6999999999999998 589999999999999999999999986
Q ss_pred C-----cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHH-----------------HHcCCceeEEEeeccccCCCC
Q 009804 229 H-----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEV-----------------RRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~-----d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~-----------------~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+ ++.+++++|++++||+||+||||||+++|++|++++ .+++..++||||||||||||+
T Consensus 286 ~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~ 365 (989)
T 3opy_A 286 EFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMC 365 (989)
T ss_dssp STTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCT
T ss_pred cccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCC
Confidence 3 478999999999999999999999999999987642 223467899999999999999
Q ss_pred CCc-------------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccc-hhhHHHHHH
Q 009804 287 VPL-------------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEG-HGGLFEYIE 328 (525)
Q Consensus 287 gtD-------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg-~~~lle~I~ 328 (525)
+|| ||||||++||||+ +||+|||||+||++++ ...+.+.++
T Consensus 366 gTD~TiGFdTAl~~i~eaId~I~~TA~Sh~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 366 GTDSTIGAYSSLERIIELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp TCSCCEEHHHHHHHHHHHHHHHHSSCCCTTEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCCChhhHHHHHHHHHHHHHhhhhccCceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 999 9999999999999 7999999999999874 223334444
Q ss_pred HHHHc-CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCC
Q 009804 329 TRLKE-NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPS 407 (525)
Q Consensus 329 ~rl~~-~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~p 407 (525)
++.++ ++|+|||||||+.+.. ++... +..+++.|++ ++ +.+|..+|||+|||++|
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~--------------~~~i~---~~~l~~~l~~-~G------~dtR~tvLGHiQRGG~P 500 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQ--------------LNPIT---SEEVKDVLVE-IG------LDTRITRLGHVQRGGAP 500 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTT--------------SCBCC---HHHHHHHHHT-TT------CEEEEEECGGGGGCSCC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------cccch---HHHHHHHHHH-hC------cchhhhhhhHHHcCCCC
Confidence 43333 5799999999996531 22111 3556777765 44 35678899999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEEEechhHHhhhcCcCC--cchHHHHHHHhccCCCCCcC
Q 009804 408 NASDNVYCTLLAQSCVHGAMAGYT---GYTSGLVNGRQTYIPFYRIIEKQHHVV--ITDRMWARLLSSTNQPSFMN 478 (525)
Q Consensus 408 sa~Dr~~a~~LG~~AV~~a~aG~t---g~mVgi~n~~~~~vPL~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~ 478 (525)
+++||++|++||++||+++++|.+ |+|||+++++++++||++++...|.|. .+...|.+.++..| ++|..
T Consensus 501 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~lr~-~~F~~ 575 (989)
T 3opy_A 501 CAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQLRD-QEFAT 575 (989)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-HHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhccC-hHHHH
Confidence 999999999999999999999985 899999999999999999999888886 45778999999887 47764
No 12
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=8.9e-65 Score=573.44 Aligned_cols=300 Identities=21% Similarity=0.327 Sum_probs=256.8
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCC---eEeCChhhhhcccccCcccccccCCC
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN---TIALTPKGVNDIHKRGGTVLGTSRGG 228 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~---~i~Lt~~~v~~i~~~GGtiLGSsR~~ 228 (525)
..+||||+||||+|||||++||++|+.+.. +| .+||||++||+||++++ +.+|+|++|++|+++|||+|||+|++
T Consensus 180 ~~krIgIlTsGGdaPGmNAaIRaVVr~a~~-~g-~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 180 VRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-KG-CKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp CCCCEEEEECSSCCTTHHHHHHHHHHHHHH-TT-CCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred cCCEEEEEeeCcCchhHHHHHHHHHHHHHH-CC-CEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 367999999999999999999999999974 67 59999999999999986 88999999999999999999999996
Q ss_pred C-----cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHH-----------------HHHHcCCceeEEEeeccccCCCC
Q 009804 229 H-----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYE-----------------EVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~-----d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e-----------------~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+ ++.+++++|++++||+||+||||||+++|++|++ +.++++..++||||||||||||+
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 3 3678999999999999999999999999998764 34556677999999999999999
Q ss_pred CCc-------------------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccc-hhhHHHHHH
Q 009804 287 VPL-------------------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEG-HGGLFEYIE 328 (525)
Q Consensus 287 gtD-------------------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg-~~~lle~I~ 328 (525)
+|| ||||||+++|||+ +||+|||||.||++++ ...+++.++
T Consensus 338 gTD~TiGfdTAv~~i~eaId~I~~tA~Sh~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i~ 416 (941)
T 3opy_B 338 STDATIGAFSSLDRICRAIDYIDATANSHSRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVG 416 (941)
T ss_dssp SCSSCEEHHHHHHHHHHHHHHHHSCC-CCSEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhccCceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHHH
Confidence 999 9999999999999 7999999999999973 234555555
Q ss_pred HHHHc-CCcEEEEEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCC
Q 009804 329 TRLKE-NGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPS 407 (525)
Q Consensus 329 ~rl~~-~g~~VIVVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~p 407 (525)
++.++ ++|+|||||||+.+. .|+.. .+..++++|+++++ +.+|..+|||+|||++|
T Consensus 417 ~~~~~gk~~~IVVVAEGa~~~--------------~~~~i---~~~~l~~~i~~~~g------~d~R~tvLGhiQRGG~P 473 (941)
T 3opy_B 417 KHRARGKRKTIVIVAEGAISN--------------DLSPI---SCDQVKDVLVNRLG------LDTRVTTLGHVQRGGTA 473 (941)
T ss_dssp HHHHHTCCCEEEEECTTCBCT--------------TCCBC---CHHHHHHHHHHTSC------CEEEEEECGGGGTCSCC
T ss_pred HHHhcCCCcEEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhC------CceeecccChhhcCCCC
Confidence 54433 689999999999643 22221 15678888888765 34578899999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEEEechhHHhhhcCcCCc--chHHHHHHHhccCCCCCcC
Q 009804 408 NASDNVYCTLLAQSCVHGAMAGYT---GYTSGLVNGRQTYIPFYRIIEKQHHVVI--TDRMWARLLSSTNQPSFMN 478 (525)
Q Consensus 408 sa~Dr~~a~~LG~~AV~~a~aG~t---g~mVgi~n~~~~~vPL~~v~~~~k~v~~--~~~~w~~~l~~tgqp~f~~ 478 (525)
+++||++|++||..||+++++|.+ |+|||+++++++++||++++...|.|.. +...|.+.++..| ++|..
T Consensus 474 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~~~f~~a~~lr~-~~f~~ 548 (941)
T 3opy_B 474 VAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKKAISLRD-SEFVE 548 (941)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-HHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhcCCHHHHHHccC-HHHHH
Confidence 999999999999999999999997 7999999999999999999988777643 3466777777776 46653
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-63 Score=553.21 Aligned_cols=289 Identities=18% Similarity=0.239 Sum_probs=251.8
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhc-cCCeEeCChhhhhcccccCcccccccCCCC
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFY-AKNTIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~-~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
.+.+||||+||||||||||++||++|+.+.. ++ .+||||++||+||+ ++++++|+|++|++|+++|||+|||+|+.+
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~~-~g-~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LGTsR~~~ 468 (787)
T 3o8o_A 391 SDRLNIGIVHVGAPSAALNAATRAATLYCLS-HG-HKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVA 468 (787)
T ss_dssp SCCCEEEEEEESSCCSSHHHHHHHHHHHHHH-HT-CEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTCCBCCCG
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceeccCCCCc
Confidence 3468999999999999999999999998875 56 69999999999999 899999999999999999999999999853
Q ss_pred --cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC-CceeEEEeeccccCCCCCCc-----------------
Q 009804 230 --DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG-LKVVVAGIPKTIDNDIPVPL----------------- 289 (525)
Q Consensus 230 --d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g-~~i~VIgIPKTIDNDI~gtD----------------- 289 (525)
++++++++|++++||+||+||||||+++|++|++++++++ +.|+||||||||||||++||
T Consensus 469 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~~~eaid 548 (787)
T 3o8o_A 469 SEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTD 548 (787)
T ss_dssp GGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHHHHHHHH
Confidence 7899999999999999999999999999999998765543 56899999999999999999
Q ss_pred ---------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHH---HHH--c---CCcEEEE
Q 009804 290 ---------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIET---RLK--E---NGHMVIV 340 (525)
Q Consensus 290 ---------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~---rl~--~---~g~~VIV 340 (525)
+|||||++++||+ +||+|||||+||+++ +|++.|++ +++ + +.+.+||
T Consensus 549 ~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~---~~~~~i~~~~~~~~~~~g~~~~~~iiv 624 (787)
T 3o8o_A 549 DIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLA---SIREDITLLKENFRHDKGENRNGKLLV 624 (787)
T ss_dssp HHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHH---HHHHHHHHHHHHHHHCCSCSSCCEEEE
T ss_pred HHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHHHhhcCCCCceEEE
Confidence 9999999999999 799999999999998 67776654 443 1 2458999
Q ss_pred EecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHH
Q 009804 341 IAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQ 420 (525)
Q Consensus 341 VAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~ 420 (525)
|+||+...+. +.+|+++|+++++. .+.+|..+|||+|||+.||++||++|++||.
T Consensus 625 vaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~ 679 (787)
T 3o8o_A 625 RNEQASSVYS---------------------TQLLADIISEASKG----KFGVRTAIPGHVQQGGVPSSKDRVTASRFAV 679 (787)
T ss_dssp EETTSCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEEBCGGGGGCSSCCHHHHHHHHHHHH
T ss_pred EeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEecccccccCCCCCHHHHHHHHHHHH
Confidence 9999864321 56788888887541 1456899999999999999999999999999
Q ss_pred HHHHHHHcCC---------------------------------CceEEEEECCeEEEechhHHhhhc---CcCCcchHHH
Q 009804 421 SCVHGAMAGY---------------------------------TGYTSGLVNGRQTYIPFYRIIEKQ---HHVVITDRMW 464 (525)
Q Consensus 421 ~AV~~a~aG~---------------------------------tg~mVgi~n~~~~~vPL~~v~~~~---k~v~~~~~~w 464 (525)
.||+++++|. +++|+|+.+++++++||+++.+.+ ++-.|+.+||
T Consensus 680 ~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~~w 759 (787)
T 3o8o_A 680 KCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEVHW 759 (787)
T ss_dssp HHHHHHHHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCCCC
T ss_pred HHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcChHH
Confidence 9999999876 689999999999999999998542 2234788899
Q ss_pred HHHHhc
Q 009804 465 ARLLSS 470 (525)
Q Consensus 465 ~~~l~~ 470 (525)
.++...
T Consensus 760 ~~~~~~ 765 (787)
T 3o8o_A 760 AEYNKI 765 (787)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 976543
No 14
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-63 Score=554.91 Aligned_cols=287 Identities=20% Similarity=0.230 Sum_probs=250.5
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhcc-CCeEeCChhhhhcccccCcccccccCCC--
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYA-KNTIALTPKGVNDIHKRGGTVLGTSRGG-- 228 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~-~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-- 228 (525)
+.+||||+||||||||||++||++|+.+.. ++ .+||||++||+||++ +++.+|+|++|++|+++|||+|||+|+.
T Consensus 392 ~~~~IgIltsGGdapGmNaaIravv~~a~~-~g-~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~ 469 (766)
T 3o8o_B 392 KRLKIAIVNVGAPAGGINSAVYSMATYCMS-QG-HRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTNRVTPE 469 (766)
T ss_dssp CCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HT-CEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTCCCCCCGG
T ss_pred cCcEEEEEecCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEccCCCCCc
Confidence 357999999999999999999999998875 56 699999999999996 7899999999999999999999999985
Q ss_pred -CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC-CceeEEEeeccccCCCCCCc-----------------
Q 009804 229 -HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG-LKVVVAGIPKTIDNDIPVPL----------------- 289 (525)
Q Consensus 229 -~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g-~~i~VIgIPKTIDNDI~gtD----------------- 289 (525)
+++++++++|++++||+||+||||||+++|++|+++.+++. +.|+||||||||||||++||
T Consensus 470 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~~~~~aid 549 (766)
T 3o8o_B 470 EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCD 549 (766)
T ss_dssp GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHHHHHHHHH
Confidence 36899999999999999999999999999999998654332 46889999999999999999
Q ss_pred ---------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHH---HHH-----cCCcEEEE
Q 009804 290 ---------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIET---RLK-----ENGHMVIV 340 (525)
Q Consensus 290 ---------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~---rl~-----~~g~~VIV 340 (525)
||||||++++||+ +||+|||||+||+++ +|++.|++ +++ .+.+.+||
T Consensus 550 ~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~iiv 625 (766)
T 3o8o_B 550 VVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLE---QLSEDIEYLAQSFEKAEGRGRFGKLIL 625 (766)
T ss_dssp HHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHH---HHHHHHHHHHHHHHHHTTCTTCCEEEE
T ss_pred HHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhccCCCceEEE
Confidence 9999999999999 799999999999998 67777654 333 14678999
Q ss_pred EecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHH
Q 009804 341 IAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQ 420 (525)
Q Consensus 341 VAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~ 420 (525)
|+||+...+. +.+|+++|+++.+. .+.+|..+|||+|||+.||++||++|++||.
T Consensus 626 vaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~ 680 (766)
T 3o8o_B 626 KSTNASKALS---------------------ATKLAEVITAEADG----RFDAKPAYPGHVQQGGLPSPIDRTRATRMAI 680 (766)
T ss_dssp EEGGGCSSCC---------------------HHHHHHHHHHHHTT----SCEEEEEBCGGGGGCSSCCHHHHHHHHHHHH
T ss_pred EeCCcCCCCc---------------------HHHHHHHHHHHhCC----CceEEEecccccccCCCCCHHHHHHHHHHHH
Confidence 9999854322 56788888887531 1456899999999999999999999999999
Q ss_pred HHHHHHHcCC----------------------CceEEEEECCeEEEechhHHhhhc---CcCCcchHHHHHHHh
Q 009804 421 SCVHGAMAGY----------------------TGYTSGLVNGRQTYIPFYRIIEKQ---HHVVITDRMWARLLS 469 (525)
Q Consensus 421 ~AV~~a~aG~----------------------tg~mVgi~n~~~~~vPL~~v~~~~---k~v~~~~~~w~~~l~ 469 (525)
.||+++++|. +++|||+++++++++||+++.+.+ ++-.|+.+||.++..
T Consensus 681 ~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~~ 754 (766)
T 3o8o_B 681 KAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATRL 754 (766)
T ss_dssp HHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHHH
T ss_pred HHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHHH
Confidence 9999999999 899999999999999999998542 233478889997653
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.2e-63 Score=559.80 Aligned_cols=288 Identities=18% Similarity=0.226 Sum_probs=249.8
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhc-cCCeEeCChhhhhcccccCcccccccCCC-
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFY-AKNTIALTPKGVNDIHKRGGTVLGTSRGG- 228 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~-~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~- 228 (525)
.+.+||||+||||||||||++||++|+.+.. ++ .+||||++||+||+ ++++++|+|++|++|+++|||+|||+|+.
T Consensus 569 ~~~~rIgIltsGGdapGmNaaIravv~~a~~-~g-~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~ 646 (941)
T 3opy_B 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCMS-RG-HVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGTNRTLP 646 (941)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HT-CEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSCEECCCT
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEeccCCCCc
Confidence 4568999999999999999999999998875 56 69999999999999 79999999999999999999999999984
Q ss_pred --CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCc----------------
Q 009804 229 --HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPL---------------- 289 (525)
Q Consensus 229 --~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD---------------- 289 (525)
+++++++++|++++||+||+||||||+++|++|+++++++ .+.|+||||||||||||++||
T Consensus 647 ~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~~i~eai 726 (941)
T 3opy_B 647 NDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYC 726 (941)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHHHHHHHH
Confidence 3689999999999999999999999999999999875544 246899999999999999999
Q ss_pred ----------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHH---HHHH-----cCCcEEE
Q 009804 290 ----------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIE---TRLK-----ENGHMVI 339 (525)
Q Consensus 290 ----------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~---~rl~-----~~g~~VI 339 (525)
||||||+++|||+ +||+|||||+||+++ +|++.|+ ++++ .+.+.+|
T Consensus 727 d~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~---~l~~~i~~l~~~~~~~~g~~~~~~iI 802 (941)
T 3opy_B 727 DVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLA---QLEMDINSLKESFANDQGKTKSGRLI 802 (941)
T ss_dssp HHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHH---HHHHHHHHHHHHHHTCTTSCCCCEEE
T ss_pred HHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 9999999999999 799999999999998 6776664 4453 1345899
Q ss_pred EEecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHH
Q 009804 340 VIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLA 419 (525)
Q Consensus 340 VVAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG 419 (525)
|||||+...+. +..|+++|+++++. .+.+|..+|||+||||.|+++||++|++||
T Consensus 803 vvaEga~~~~~---------------------~~~la~~i~~~~~~----g~e~R~tvLGHiQRGG~Psa~DRilAtr~G 857 (941)
T 3opy_B 803 LKSENASKVLT---------------------TEVISTIIDDEASG----RFDSKTAIPGHVQQGGIPSPMDRVRASRFA 857 (941)
T ss_dssp EEEGGGCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEECCCTTTTCSSCCHHHHHHHHHHH
T ss_pred EEeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEccccccccCCCCCHHHHHHHHHHH
Confidence 99999864321 46788888887541 145689999999999999999999999999
Q ss_pred HHHHHHHHcCC--------------------CceEEEEECCeEEEechhHHhhhc---CcCCcchHHHHHHHh
Q 009804 420 QSCVHGAMAGY--------------------TGYTSGLVNGRQTYIPFYRIIEKQ---HHVVITDRMWARLLS 469 (525)
Q Consensus 420 ~~AV~~a~aG~--------------------tg~mVgi~n~~~~~vPL~~v~~~~---k~v~~~~~~w~~~l~ 469 (525)
.+||+++++|. +++|||+++++++++||+++.+.+ .+-.|+.+||.++..
T Consensus 858 ~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~ 930 (941)
T 3opy_B 858 IRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVRE 930 (941)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHH
T ss_pred HHHHHHHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHH
Confidence 99999999998 899999999999999999998642 223478889987653
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.2e-62 Score=550.71 Aligned_cols=287 Identities=21% Similarity=0.283 Sum_probs=247.5
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhc-cCCeEeCChhhhhcccccCcccccccCCC-
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFY-AKNTIALTPKGVNDIHKRGGTVLGTSRGG- 228 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~-~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~- 228 (525)
.+.+||||+||||+|||||++||++|+.+.. ++ .+||||++||+||+ ++++++|+|++|++|+++|||+|||+|+.
T Consensus 596 ~~~~rIgIltsGGdaPGmNAaIravV~~a~~-~g-~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~ 673 (989)
T 3opy_A 596 SSRLNIAIIHVGAPTSALNPATRVATLNSLA-KG-HRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGTNRSLP 673 (989)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHHH-TT-CEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSCCBCCCG
T ss_pred cCCceEEEEecCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEeccCCCCc
Confidence 3568999999999999999999999998864 56 69999999999999 99999999999999999999999999985
Q ss_pred -CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC-CceeEEEeeccccCCCCCCc-----------------
Q 009804 229 -HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG-LKVVVAGIPKTIDNDIPVPL----------------- 289 (525)
Q Consensus 229 -~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g-~~i~VIgIPKTIDNDI~gtD----------------- 289 (525)
+++++++++|++++||+||+||||||+++|++|++++.++. +.|+||||||||||||++||
T Consensus 674 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~~~eaId 753 (989)
T 3opy_A 674 SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCD 753 (989)
T ss_dssp GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHHHHHHHH
Confidence 47999999999999999999999999999999998765442 46899999999999999999
Q ss_pred ---------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHH---HHHHc-----CCcEEEE
Q 009804 290 ---------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIE---TRLKE-----NGHMVIV 340 (525)
Q Consensus 290 ---------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~---~rl~~-----~g~~VIV 340 (525)
||||||+++|||+ +||+|||||+||+++ .|++.|+ ++++. +.++|||
T Consensus 754 ~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~---~l~~~i~~l~~~~~~~~g~~~~~~IIv 829 (989)
T 3opy_A 754 AVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQ---TVQEDIELLTRTYEEDDGKNRSGKIFI 829 (989)
T ss_dssp HHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHH---HHHHHHHHHHHHHTTCC---CCCEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHHHhccCCccceEEE
Confidence 9999999999999 799999999999998 6766665 45531 2568999
Q ss_pred EecCCCCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHH
Q 009804 341 IAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQ 420 (525)
Q Consensus 341 VAEGa~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~ 420 (525)
||||+...+. +.+|+++|+++.+. . +.+|..+|||+||||.|+++||++|++||.
T Consensus 830 vaEga~~~~~---------------------~~~la~~i~e~~~~--~--~e~R~tvLGHiQRGG~Psa~DRilAtr~G~ 884 (989)
T 3opy_A 830 HNEKASKVYT---------------------TDLIAAIIGEAGKG--R--FESRTAVPGHVQQGKSPSSIDRVNACRLAI 884 (989)
T ss_dssp EESSSCSSSC---------------------HHHHHHHHHHTTTT--T--SCEEEECCGGGGGCSSCCHHHHHHHHHHHH
T ss_pred EeCCCcCCCC---------------------HHHHHHHHHHhcCC--C--ceeEecccccccCCCCCCHHHHHHHHHHHH
Confidence 9999864321 56889999887531 1 356889999999999999999999999999
Q ss_pred HHHHHHHcCC---------------------------------------CceEEEEECCeEEEechhHHhhh----cCcC
Q 009804 421 SCVHGAMAGY---------------------------------------TGYTSGLVNGRQTYIPFYRIIEK----QHHV 457 (525)
Q Consensus 421 ~AV~~a~aG~---------------------------------------tg~mVgi~n~~~~~vPL~~v~~~----~k~v 457 (525)
+||++++++. +.+++|+++.++.+.|+.++.+. ++++
T Consensus 885 ~Ave~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~r~ 964 (989)
T 3opy_A 885 KCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKWRK 964 (989)
T ss_dssp HHHHHHTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC--
T ss_pred HHHHHHHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhhCC
Confidence 9999999876 35699999999999999999643 3333
Q ss_pred CcchHHHHHHHh
Q 009804 458 VITDRMWARLLS 469 (525)
Q Consensus 458 ~~~~~~w~~~l~ 469 (525)
|+.+||.++..
T Consensus 965 -p~~~~W~~~~~ 975 (989)
T 3opy_A 965 -GKNVHWEQLNI 975 (989)
T ss_dssp ---CCCCHHHHH
T ss_pred -CcChHHHhHHH
Confidence 77889987654
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=92.13 E-value=0.21 Score=49.35 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=51.7
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
.|++|+.-.+ .+..+..++.+...+.. +| .+|+.......++-. .| ... ...+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~-~g-~~v~~~~~~~~~~~~-----------------~~----~~~--~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD-QG-YEVIVEQQIAHELQL-----------------KN----VPT--GTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH-TT-CEEEEEHHHHHHTTC-----------------SS----CCE--ECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH-CC-CEEEEecchhhhccc-----------------cc----ccc--cchhh
Confidence 5799998755 37778888999888865 56 467665544333210 01 000 11111
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
...+.|.++++|||||+..|..... +.+++++|||
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 2346899999999999988764432 2347899998
No 18
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=91.28 E-value=2.1 Score=40.50 Aligned_cols=124 Identities=7% Similarity=-0.001 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+||++...-.-|-...+++++...+.. +|. ++.- .-+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LGG-TAIA-------------------------------LDAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TTC-EEEE-------------------------------EECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEEE-------------------------------EcCCCCHHHH
Confidence 446899999877778888889999888864 552 2211 1111112335
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--hhhHHHHHHhhh--cCCc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL--LTWFIAMYATLA--SRDV 305 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD--~sG~IAl~aaLA--s~~a 305 (525)
.+.++.+...++|++++.+.+..... ...+.+.+.++ +||.+=...++++.. +| .+|++|+..-+. .+.-
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~i--PvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~ 126 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVLN--PWLQKINDAGI--PLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKG 126 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHHH--HHHHHHHHTTC--CEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCCC--cEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCc
Confidence 67788899999999999988754322 23345556675 466554444433332 33 789998877766 6667
Q ss_pred cEEEcCC
Q 009804 306 DCCLIPE 312 (525)
Q Consensus 306 d~iLIPE 312 (525)
.++++-.
T Consensus 127 ~i~~i~~ 133 (291)
T 3l49_A 127 NVLVFNG 133 (291)
T ss_dssp EEEEECS
T ss_pred eEEEEeC
Confidence 7877743
No 19
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=91.12 E-value=0.11 Score=51.26 Aligned_cols=46 Identities=28% Similarity=0.337 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcC-------CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 231 TSKIVDSIQDRG-------INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 231 ~~~iv~~l~~~~-------Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
.+++.+.|++++ .|.+|++|||||+..|..... ...-+++++|||-
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 455666666665 499999999999987665431 2212578999974
No 20
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=90.46 E-value=2.6 Score=39.72 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=75.8
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||+++..-.-|-...+++++-..+.. +|. ++.-+ -+........
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~~ 61 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSE-QGY-SMLLT-------------------------------STNNNPDNER 61 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHH-TTC-EEEEE-------------------------------ECTTCHHHHH
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------eCCCChHHHH
Confidence 36899999887888888999999888865 553 33210 0111112345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchH-HHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCcc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQK-GASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~-~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad 306 (525)
+.++.|...++|++++.+.+.+.. ....+.+.+.+.++ +||.+=..+++ +++ .+| .+|..|+.--+..|+-.
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~i--PvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~ 139 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGI--PFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTH 139 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTC--CEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCC--CEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 778888999999999999875421 11223345555675 46644322222 111 233 88888887666665666
Q ss_pred EEEc
Q 009804 307 CCLI 310 (525)
Q Consensus 307 ~iLI 310 (525)
+.++
T Consensus 140 i~~i 143 (298)
T 3tb6_A 140 MMGI 143 (298)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 21
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=88.70 E-value=6.7 Score=37.59 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+|||+...-.-|-...+++++...+.. +|. ++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LGA-KVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TSC-EEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEEE-------------------------------ECCCCCHHHHH
Confidence 45899999877788888999999888864 452 2211 11111112345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CC---CCCc--hhhHHHHHHhh-hcCCc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DI---PVPL--LTWFIAMYATL-ASRDV 305 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI---~gtD--~sG~IAl~aaL-As~~a 305 (525)
+.++.+...++|++++.+-+.+.. ..+.+.+.+.| |+||.+=..+++ ++ .++| .+|++|+..-+ ..+.-
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~ 124 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQG 124 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSE
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCCC
Confidence 778889999999999999876531 11223444456 556755443332 11 1233 78999887666 55555
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
.+++|-
T Consensus 125 ~i~~i~ 130 (313)
T 3m9w_A 125 NYFLMG 130 (313)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 677763
No 22
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=87.46 E-value=4.5 Score=38.50 Aligned_cols=124 Identities=9% Similarity=-0.014 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CC
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GH 229 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~ 229 (525)
++..+|+++.....-|=...+++++...+.. +|. ++.- +..+.. ..
T Consensus 2 s~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~ 48 (305)
T 3g1w_A 2 SLNETYMMITFQSGMDYWKRCLKGFEDAAQA-LNV-TVEY-------------------------------RGAAQYDIQ 48 (305)
T ss_dssp ---CEEEEEESSTTSTHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EECSSSCHH
T ss_pred CCCceEEEEEccCCChHHHHHHHHHHHHHHH-cCC-EEEE-------------------------------eCCCcCCHH
Confidence 4567899999888889899999999888865 553 3321 011111 13
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CC--CCc--hhhHHHHHHhhhc-
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IP--VPL--LTWFIAMYATLAS- 302 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~--gtD--~sG~IAl~aaLAs- 302 (525)
...+.++.+...++|++++.+.+.... ....+.+.+.++ +||.+-..+++. +. ++| .+|++|+.--+..
T Consensus 49 ~~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~ 124 (305)
T 3g1w_A 49 EQITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAGI--PIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELL 124 (305)
T ss_dssp HHHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTTC--CEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCCC--cEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHh
Confidence 355778888889999999998776521 112234445564 566554444331 22 233 7888887666665
Q ss_pred -CCccEEEcC
Q 009804 303 -RDVDCCLIP 311 (525)
Q Consensus 303 -~~ad~iLIP 311 (525)
+.-.++++-
T Consensus 125 ~g~~~i~~i~ 134 (305)
T 3g1w_A 125 DGEGEVAVIT 134 (305)
T ss_dssp TTCEEEEEEE
T ss_pred CCCcEEEEEe
Confidence 566666664
No 23
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=87.13 E-value=6.8 Score=37.31 Aligned_cols=122 Identities=9% Similarity=-0.024 Sum_probs=76.1
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCccccccc--CCCCc
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTS--RGGHD 230 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSs--R~~~d 230 (525)
+.+||+++..-.-|-...+++++...+.. +|. ++. +..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~-------------------------------~~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LKV-DLQ-------------------------------ILAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HTC-EEE-------------------------------EECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hCc-EEE-------------------------------EECCCCcCCHHH
Confidence 46899999887788889999999888864 452 221 01111 11233
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-----CCC--CCc--hhhHHHHHHhhh
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-----DIP--VPL--LTWFIAMYATLA 301 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-----DI~--gtD--~sG~IAl~aaLA 301 (525)
..+.++.|...++|++++.+-+.... ....+.+.+.|+ +||.+=..+++ .+. ++| .+|++|+..-+.
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~gi--PvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~ 125 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLNI--PVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALE 125 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHTC--CEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCCC--CEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHH
Confidence 55778888899999999988775522 112234445575 56655433333 111 233 789999877767
Q ss_pred cC--CccEEEcC
Q 009804 302 SR--DVDCCLIP 311 (525)
Q Consensus 302 s~--~ad~iLIP 311 (525)
.+ .-.++++-
T Consensus 126 ~g~~~~~i~~i~ 137 (297)
T 3rot_A 126 LTPSAKRALVLN 137 (297)
T ss_dssp HCTTCCEEEEEE
T ss_pred hcCCCceEEEEe
Confidence 65 45666663
No 24
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=86.76 E-value=4.7 Score=38.00 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=75.5
Q ss_pred CCeEEEEEcCC-----CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC
Q 009804 152 DEVYACIVTCG-----GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR 226 (525)
Q Consensus 152 ~~~~iaIvtsG-----G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR 226 (525)
+..+|||++.. -.-|-...+++++...+.+ +|. ++. +..+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EGY-ALY--------------------------------MSTGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TTC-EEE--------------------------------ECCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCC
Confidence 44689999987 6778888899999888864 552 221 00111
Q ss_pred C-CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CC--CCc--hhhHHHHHHh
Q 009804 227 G-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IP--VPL--LTWFIAMYAT 299 (525)
Q Consensus 227 ~-~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~--gtD--~sG~IAl~aa 299 (525)
. .+...++++.+...++|++++.+.+.+.. ..+.+.+.++ +||.+=..++.+ +. ++| .+|+.|+.--
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~i--PvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L 126 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQNF--PFVLIGKPYDRKDEITYVDNDNYTAAREVAEYL 126 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTTC--CEEEESCCSSCTTTSCEEECCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCCC--CEEEECCCCCCCCCCCEEEECcHHHHHHHHHHH
Confidence 1 12346788889999999999998876543 3344455675 456443333221 22 234 7888888766
Q ss_pred hhcCCccEEEcC
Q 009804 300 LASRDVDCCLIP 311 (525)
Q Consensus 300 LAs~~ad~iLIP 311 (525)
+..|.-.++++-
T Consensus 127 ~~~G~~~i~~i~ 138 (292)
T 3k4h_A 127 ISLGHKQIAFIG 138 (292)
T ss_dssp HHTTCCCEEEEE
T ss_pred HHCCCceEEEEe
Confidence 666556676664
No 25
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=86.55 E-value=9.5 Score=36.02 Aligned_cols=119 Identities=10% Similarity=0.032 Sum_probs=76.3
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+||++...-.-|=...++.++...+.. +|. ++.-+ -+.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KGY-SVLLA-------------------------------NTAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEEEE-------------------------------ECTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------eCCCCHHHH
Confidence 446899999877778888899998888864 553 33210 011111234
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC-------Cc--hhhHHHHHHhhhc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV-------PL--LTWFIAMYATLAS 302 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g-------tD--~sG~IAl~aaLAs 302 (525)
.++++.|...++|++++.+.+.... +.+.+.+.+ ++||.+ |+++.. +| .+|+.|+.--+..
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 123 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHD----YLRTELPKT--FPIVAV----NRELRIPGCGAVLSENVRGARTAVEYLIAR 123 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCTT--SCEEEE----SSCCCCTTCEEEEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhccC--CCEEEE----ecccCCCCCCEEEECcHHHHHHHHHHHHHc
Confidence 6788889999999999999876332 223333445 556644 444442 23 8899888766666
Q ss_pred CCccEEEcCCC
Q 009804 303 RDVDCCLIPES 313 (525)
Q Consensus 303 ~~ad~iLIPE~ 313 (525)
|.-.++++-..
T Consensus 124 G~~~i~~i~~~ 134 (291)
T 3egc_A 124 GHTRIGAIVGS 134 (291)
T ss_dssp TCCSEEEECSC
T ss_pred CCCEEEEEeCC
Confidence 66778777543
No 26
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=86.13 E-value=17 Score=33.57 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=73.7
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
.+||++...-.-|-...++.++...+.. +|. ++.- .-+....+...+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RGY-QLLI-------------------------------ASSDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TTC-EEEE-------------------------------EECTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCCCCHHHHHH
Confidence 4799999887788888899999888864 553 3321 001111123457
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC-------Cc--hhhHHHHHHhhhcCC
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV-------PL--LTWFIAMYATLASRD 304 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g-------tD--~sG~IAl~aaLAs~~ 304 (525)
.++.+...++|++++.+.+.... ...+.+.+.++ +||. +|+++.. +| .+|+.|+.--+..|.
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~i--PvV~----~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~ 120 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPED---DSYRELQDKGL--PVIA----IDRRLDPAHFCSVISDDRDASRQLAASLLSSAP 120 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTTC--CEEE----ESSCCCTTTCEEEEECHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCEEEEecCccccH---HHHHHHHHcCC--CEEE----EccCCCccccCEEEEchHHHHHHHHHHHHHCCC
Confidence 78889999999999998874321 12244455675 4563 3444443 23 788888876666655
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-.+.++-
T Consensus 121 ~~i~~i~ 127 (272)
T 3o74_A 121 RSIALIG 127 (272)
T ss_dssp SEEEEEE
T ss_pred cEEEEEe
Confidence 6677763
No 27
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=86.12 E-value=10 Score=35.90 Aligned_cols=118 Identities=8% Similarity=-0.115 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCh--hhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC
Q 009804 152 DEVYACIVTCGGLC--PGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 152 ~~~~iaIvtsGG~~--PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
+..+|||+...-.- |=...++.++-..+.+ +|. ++.- .+ +.....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~---------------~~----------------~~~~~~ 53 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQY-HLVV---------------TP----------------HIHAKD 53 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SSC-EEEE---------------CC----------------BSSGGG
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cCC-EEEE---------------ec----------------CCcchh
Confidence 34589999875433 7778888888777753 442 2211 00 001112
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC-------Cc--hhhHHHHHHhh
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV-------PL--LTWFIAMYATL 300 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g-------tD--~sG~IAl~aaL 300 (525)
...++.+.+...++|++++.+.+..-.. .+.+.+.++ +||. +|++.+. +| .+|+.|+.--+
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~i--PvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 123 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDPR----VRFMTERNM--PFVT----HGRSDMGIEHAFHDFDNEAYAYEAVERLA 123 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTTC--CEEE----ESCCCSSCCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCCC--CEEE----ECCcCCCCCCcEEEeCcHHHHHHHHHHHH
Confidence 2356677788899999999987654432 244455575 4563 3444332 23 78888887666
Q ss_pred hcCCccEEEcCC
Q 009804 301 ASRDVDCCLIPE 312 (525)
Q Consensus 301 As~~ad~iLIPE 312 (525)
..|.-.+.++-.
T Consensus 124 ~~G~~~I~~i~~ 135 (288)
T 3gv0_A 124 QCGRKRIAVIVP 135 (288)
T ss_dssp HTTCCEEEEECC
T ss_pred HCCCCeEEEEcC
Confidence 665667777743
No 28
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=85.45 E-value=13 Score=34.73 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCc
Q 009804 151 SDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHD 230 (525)
Q Consensus 151 ~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d 230 (525)
.+..+|||++..-.-|-...++.++...+.+ +|. ++.-+ -+......
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~-------------------------------~~~~~~~~ 51 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RGY-IGVLF-------------------------------DANADIER 51 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TTC-EEEEE-------------------------------ECTTCHHH
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------eCCCCHHH
Confidence 3456899999877778888888888887764 452 33210 01111123
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC-CC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND-IP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND-I~--gtD--~sG~IAl~aaLAs~~a 305 (525)
..++++.+...++|++++.+.+. ..+.+.+.+.++ +||.+=..+++. ++ .+| .+|+.|+.--+..|.-
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~-----~~~~~~l~~~~i--PvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~ 124 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN-----PQTVQEILHQQM--PVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQ 124 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC-----HHHHHHHHTTSS--CEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCCCCEEEEecCCc-----HHHHHHHHHCCC--CEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCC
Confidence 45788889999999999999887 223345555564 566553333321 22 234 7889888766666556
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
.++++-
T Consensus 125 ~I~~i~ 130 (276)
T 3jy6_A 125 HVVVLT 130 (276)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 666664
No 29
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=84.31 E-value=0.45 Score=47.71 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=30.6
Q ss_pred HHHHHHHHHHc---------------CCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 231 TSKIVDSIQDR---------------GINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 231 ~~~iv~~l~~~---------------~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
.+++.+.|+++ +.|.++++|||||+..|..... .. ++|+||..
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~ 99 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT 99 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC
Confidence 55666666665 4588999999999976654321 33 78999973
No 30
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=83.58 E-value=16 Score=35.03 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+|||++..-.-|=...+++++...+.. +|. ++.- ..+.......
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~ 48 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQE-AGY-KTDL-------------------------------QYADDDIPNQ 48 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHH-TTC-EEEE-------------------------------EECTTCHHHH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHH-cCC-EEEE-------------------------------eeCCCCHHHH
Confidence 346899999877788888899999888864 552 2221 1111111234
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC--CCC---CCc--hhhHHHHHHhhh---
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN--DIP---VPL--LTWFIAMYATLA--- 301 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--DI~---gtD--~sG~IAl~aaLA--- 301 (525)
.+.++.+...++|++++.+-+.... ....+.+.+.| |+||.+=..+++ +.. ++| .+|++|+..-+.
T Consensus 49 ~~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~ 124 (330)
T 3uug_A 49 LSQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLG 124 (330)
T ss_dssp HHHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEESSCCCSCTTCCEEEEECHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEECCCCCCCCceeEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5678888889999999998875322 12224445556 457765444433 121 234 789988776665
Q ss_pred ----cCCccEEEcCC
Q 009804 302 ----SRDVDCCLIPE 312 (525)
Q Consensus 302 ----s~~ad~iLIPE 312 (525)
.|.-.++++-.
T Consensus 125 ~~~~~G~~~i~~i~g 139 (330)
T 3uug_A 125 LKDGKGPFNIELFGG 139 (330)
T ss_dssp GGGTCCCEEEEECBC
T ss_pred ccCCCCceEEEEEEC
Confidence 44557888743
No 31
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=82.07 E-value=1.2 Score=44.95 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND 284 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND 284 (525)
.++++.+...+.|.++++|||||+..+..-. .+.+.++++.+||.==-||
T Consensus 70 ~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~ 119 (337)
T 2qv7_A 70 TLEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVND 119 (337)
T ss_dssp HHHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCH
T ss_pred HHHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhH
Confidence 3445555556789999999999998765432 2235567889999743343
No 32
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=81.07 E-value=1.9 Score=43.40 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc--CCceeEEEeeccccCC
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR--GLKVVVAGIPKTIDND 284 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~--g~~i~VIgIPKTIDND 284 (525)
.++++.+...+.|.++++|||||+..+..-. .++ +.++++..||.==-||
T Consensus 72 ~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l---~~~~~~~~~plgiiP~Gt~N~ 123 (332)
T 2bon_A 72 ARYVEEARKFGVATVIAGGGDGTINEVSTAL---IQCEGDDIPALGILPLGTAND 123 (332)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHHHHHHHH---HHCCSSCCCEEEEEECSSSCH
T ss_pred HHHHHHHHhcCCCEEEEEccchHHHHHHHHH---hhcccCCCCeEEEecCcCHHH
Confidence 3444555556899999999999998755432 222 4557778888743444
No 33
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=79.86 E-value=29 Score=32.40 Aligned_cols=120 Identities=6% Similarity=0.063 Sum_probs=71.6
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||++...-..|-...+++++-..+.. +|. ++.- .-+....+...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 53 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KGY-TLIL-------------------------------GNAWNNLEKQR 53 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-eEEE-------------------------------EcCCCChHHHH
Confidence 35899998766778788888888877754 442 2210 00001112345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-cCCceeEEEeeccccC-C-C--CCCc--hhhHHHHHHhhhcCCc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-RGLKVVVAGIPKTIDN-D-I--PVPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-~g~~i~VIgIPKTIDN-D-I--~gtD--~sG~IAl~aaLAs~~a 305 (525)
+.++.|...++|++++.+.+.+-. +.+.+.+ .+ ++||.+-..+++ + . -.+| .+|..|+.--+..|.-
T Consensus 54 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~~--iPvV~~~~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~ 127 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCSEYPEP----LLAMLEEYRH--IPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR 127 (289)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCHH----HHHHHHHTTT--SCEEEEECSSCCSSSCEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCCEEEEEeccCCHH----HHHHHHhccC--CCEEEEccCCCccCcCCEEEeCcHHHHHHHHHHHHHCCCC
Confidence 678888889999999999876432 2233333 45 456655444432 2 1 1234 7788887666665566
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
.+++|-
T Consensus 128 ~i~~i~ 133 (289)
T 1dbq_A 128 EIGVIP 133 (289)
T ss_dssp SEEEEC
T ss_pred eEEEEe
Confidence 777764
No 34
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=79.36 E-value=14 Score=35.35 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC-CCCcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR-GGHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR-~~~d~ 231 (525)
..+||++...-.-|=...+++++...+.. +|. ++. +..+. ..+..
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HST-DVL--------------------------------LGQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TTC-CEE--------------------------------EEECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHHH
Confidence 35799998777778888889998888764 452 221 11111 12335
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccE
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
.++++.|...++|++++.+.+.+... ..+.+.+ + ++||.+=..++++++ .+| .+|+.|+.--+..|.-.+
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~-~--iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I 134 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE-G--VPAVTINSRVPGRVGSVILDDQKGGGIATEHLITLGHSRI 134 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT-T--SCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC-C--CCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHHCCCCeE
Confidence 67888899999999999998776431 2234444 5 556755444433222 233 789998876666666677
Q ss_pred EEcC
Q 009804 308 CLIP 311 (525)
Q Consensus 308 iLIP 311 (525)
++|-
T Consensus 135 ~~i~ 138 (303)
T 3kke_A 135 AFIS 138 (303)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 35
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=79.20 E-value=35 Score=32.09 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d 230 (525)
+..+||++...-.-|=...++.++...+.. +|. ++. +..+.. ...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~ 52 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRA-VHR-HVV--------------------------------VATGCGESTP 52 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EECCCSSSCH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCchhh
Confidence 345899998766677777888888877754 442 221 001111 123
Q ss_pred HHH---HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CC--CCCc--hhhHHHHHHhhhc
Q 009804 231 TSK---IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DI--PVPL--LTWFIAMYATLAS 302 (525)
Q Consensus 231 ~~~---iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI--~gtD--~sG~IAl~aaLAs 302 (525)
..+ .++.+...++|++++.+.+.+.. ..+.+.+.++ +||.+-..+++ ++ ..+| .+|+.|+.--+..
T Consensus 53 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~i--PvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 126 (290)
T 2rgy_A 53 REQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMHP--KMVFLNRAFDALPDASFCPDHRRGGELAAATLIEH 126 (290)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHCS--SEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcCC--CEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHC
Confidence 345 78888999999999998876522 2233444575 46655333332 11 2345 7788887665555
Q ss_pred CCccEEEcC
Q 009804 303 RDVDCCLIP 311 (525)
Q Consensus 303 ~~ad~iLIP 311 (525)
|.-.+.+|-
T Consensus 127 G~~~I~~i~ 135 (290)
T 2rgy_A 127 GHRKLAVIS 135 (290)
T ss_dssp TCCSEEEEE
T ss_pred CCceEEEEe
Confidence 556676664
No 36
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=78.64 E-value=16 Score=34.45 Aligned_cols=123 Identities=9% Similarity=-0.011 Sum_probs=67.8
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+||+++..-.-|-...++.++...+.. +|. ++.-+. + +.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~--------------~----------------~~~~~~~~ 54 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK-NGY-NLIIVY--------------S----------------GSADPEEQ 54 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TTC-EEEEEC---------------------------------------
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-eEEEEe--------------C----------------CCCCHHHH
Confidence 345899999877778788888888887753 442 221100 0 00011123
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCccE
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
.+.++.+...++|++++.+.+.+- ...+.+.+.+ ++||.+-..+++++. .+| .+|+.|+.--+..|.-.+
T Consensus 55 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i 128 (290)
T 3clk_A 55 KHALLTAIERPVMGILLLSIALTD----DNLQLLQSSD--VPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEGHRQI 128 (290)
T ss_dssp -CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTTCCSE
T ss_pred HHHHHHHHhcCCCEEEEecccCCH----HHHHHHHhCC--CCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHHcCCCEE
Confidence 346677788899999999877542 1223444445 556766444443322 344 778888776665555667
Q ss_pred EEcCC
Q 009804 308 CLIPE 312 (525)
Q Consensus 308 iLIPE 312 (525)
+++-.
T Consensus 129 ~~i~~ 133 (290)
T 3clk_A 129 GIAGI 133 (290)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 77643
No 37
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=78.62 E-value=12 Score=35.71 Aligned_cols=120 Identities=9% Similarity=-0.010 Sum_probs=74.0
Q ss_pred CCeEEEEEcCC-----CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC
Q 009804 152 DEVYACIVTCG-----GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR 226 (525)
Q Consensus 152 ~~~~iaIvtsG-----G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR 226 (525)
+..+||+++.. -.-|=...++.++...+.. +|. ++.- ..+.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~--------------------------------~~~~ 66 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RGY-STRM--------------------------------TVSE 66 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HTC-EEEE--------------------------------CCCS
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CCC-EEEE--------------------------------EeCC
Confidence 34589999886 4566677788888877764 452 3321 0111
Q ss_pred C-CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC-CC--CCc--hhhHHHHHHhh
Q 009804 227 G-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND-IP--VPL--LTWFIAMYATL 300 (525)
Q Consensus 227 ~-~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND-I~--gtD--~sG~IAl~aaL 300 (525)
. .+...++++.+...++|++++.+.+.+.. ..+.+.+.++ +||.+=..++.+ +. .+| .+|++|+.--+
T Consensus 67 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~i--PvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 140 (305)
T 3huu_A 67 NSGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFKV--PYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLY 140 (305)
T ss_dssp SHHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTTC--CEEEESCCCSSTTCCEEECCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcCC--CEEEECCCCcccCCcEEEeCHHHHHHHHHHHHH
Confidence 1 12346788889999999999998876532 2344555675 466443333221 22 234 78999887666
Q ss_pred hcCCccEEEcC
Q 009804 301 ASRDVDCCLIP 311 (525)
Q Consensus 301 As~~ad~iLIP 311 (525)
..|.-.+.+|-
T Consensus 141 ~~G~~~I~~i~ 151 (305)
T 3huu_A 141 HLGHRHILFLQ 151 (305)
T ss_dssp HTTCCSEEEEE
T ss_pred HCCCCeEEEEc
Confidence 66666777663
No 38
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=77.86 E-value=24 Score=33.46 Aligned_cols=119 Identities=8% Similarity=-0.003 Sum_probs=71.0
Q ss_pred CeEEEEEcC----CCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC
Q 009804 153 EVYACIVTC----GGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG 228 (525)
Q Consensus 153 ~~~iaIvts----GG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~ 228 (525)
..+||+++. .-.-|=...+++++...+.. +|. ++.-+ -+ ...
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~-~~~ 51 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGK-RGL-DLLLI-------------------------------PD-EPG 51 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TTC-EEEEE-------------------------------EE-CTT
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------eC-CCh
Confidence 457888886 34456677788888877764 452 33210 00 112
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASR 303 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~ 303 (525)
....++.+.+...++|++++.+.+.+.. ..+.+.+.+++ ||.+=...++ +++ .+| .+|++|+.--+..|
T Consensus 52 ~~~~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~iP--vV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 125 (294)
T 3qk7_A 52 EKYQSLIHLVETRRVDALIVAHTQPEDF----RLQYLQKQNFP--FLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELG 125 (294)
T ss_dssp CCCHHHHHHHHHTCCSEEEECSCCSSCH----HHHHHHHTTCC--EEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHhCCCC--EEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCC
Confidence 3346778889999999999999876542 22444556754 5543222211 111 233 78888887666666
Q ss_pred CccEEEcC
Q 009804 304 DVDCCLIP 311 (525)
Q Consensus 304 ~ad~iLIP 311 (525)
.-.+.+|-
T Consensus 126 ~~~I~~i~ 133 (294)
T 3qk7_A 126 HQRIAFVS 133 (294)
T ss_dssp CCCEEEEE
T ss_pred CceEEEEe
Confidence 66776663
No 39
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=77.56 E-value=39 Score=32.63 Aligned_cols=122 Identities=7% Similarity=-0.008 Sum_probs=75.2
Q ss_pred CCeEEEEEcCC--CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-
Q 009804 152 DEVYACIVTCG--GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG- 228 (525)
Q Consensus 152 ~~~~iaIvtsG--G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~- 228 (525)
...+||++... -.-|=...++.++...+.. +|. ++.- ..+...
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~--------------------------------~~~~~~~ 105 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KGR-QLLL--------------------------------ADGKHSA 105 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TTC-EEEE--------------------------------EECTTSH
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHH-CCC-EEEE--------------------------------EeCCCCh
Confidence 34589999876 5677778888888888764 552 2211 111111
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC---CCCCCc--hhhHHHHHHhhhcC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN---DIPVPL--LTWFIAMYATLASR 303 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN---DI~gtD--~sG~IAl~aaLAs~ 303 (525)
+...+.++.|...++|++++.+.+.+... +.+.+++.++ +||.+=..+++ +.-.+| .+|++|+.--+..|
T Consensus 106 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~i--PvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 180 (338)
T 3dbi_A 106 EEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHSQ--PIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAG 180 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCSS--CEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCCC--CEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHHCC
Confidence 22445788899999999999987766432 3344444564 45644222222 112344 78898887766666
Q ss_pred CccEEEcCC
Q 009804 304 DVDCCLIPE 312 (525)
Q Consensus 304 ~ad~iLIPE 312 (525)
+-.+.+|-.
T Consensus 181 ~~~I~~i~~ 189 (338)
T 3dbi_A 181 HQEIAFLTG 189 (338)
T ss_dssp CCSEEEECC
T ss_pred CCEEEEEeC
Confidence 677777743
No 40
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=77.24 E-value=14 Score=35.99 Aligned_cols=122 Identities=10% Similarity=0.024 Sum_probs=72.0
Q ss_pred CeEEEEEcCCCCh-hhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 153 EVYACIVTCGGLC-PGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~-PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
..+||+++.+-.. |=...+++++...+.. +|. ++.- +-+.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~ 49 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD-LGL-DLRI-------------------------------LYAERDPQNT 49 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EECTTCHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH-cCC-eEEE-------------------------------EECCCCHHHH
Confidence 4589999987766 8888999999888865 453 3321 0011111223
Q ss_pred HHHHHHHHH--cCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC---------------CC--CCc--h
Q 009804 232 SKIVDSIQD--RGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND---------------IP--VPL--L 290 (525)
Q Consensus 232 ~~iv~~l~~--~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND---------------I~--gtD--~ 290 (525)
.+.++.+.. .++|++++++ +... ...+.+.+.+.| |+||.+=..++++ +. ++| .
T Consensus 50 ~~~i~~~i~~~~~vDgiIi~~-~~~~--~~~~~~~~~~~g--iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~ 124 (350)
T 3h75_A 50 LQQARELFQGRDKPDYLMLVN-EQYV--APQILRLSQGSG--IKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEE 124 (350)
T ss_dssp HHHHHHHHHSSSCCSEEEEEC-CSSH--HHHHHHHHTTSC--CEEEEEESCCCTTTC------------CEEEEECCHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeC-chhh--HHHHHHHHHhCC--CcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHH
Confidence 455666666 6999999997 3322 223334555556 5567554444433 11 234 7
Q ss_pred hhHHHHHHhhhcC------C-ccEEEcCC
Q 009804 291 TWFIAMYATLASR------D-VDCCLIPE 312 (525)
Q Consensus 291 sG~IAl~aaLAs~------~-ad~iLIPE 312 (525)
+|++|+..-+..+ + -.++++..
T Consensus 125 ~g~~a~~~L~~~g~~~~~g~~~~i~~i~g 153 (350)
T 3h75_A 125 AGYRMLKELLHKLGPVPAGHGIELLAFSG 153 (350)
T ss_dssp HHHHHHHHHHHHHCCCCSSCCEEEEEEES
T ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEeC
Confidence 8888876555543 3 56777743
No 41
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=77.23 E-value=0.85 Score=45.68 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=24.4
Q ss_pred HcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 240 DRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 240 ~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
..+.|.++++|||||+..|...... .+ ++++||+
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~~--~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---AS--IPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---HT--CCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---CC--CCEEEEe
Confidence 3578999999999999887655432 23 6789997
No 42
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=77.03 E-value=18 Score=33.59 Aligned_cols=118 Identities=11% Similarity=0.042 Sum_probs=70.8
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
.+||+++..-.-|-...++.++-..+.. +|. ++. +..+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AGY-QLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TSC-EEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEcCCCCHHHHH
Confidence 4789998766677778888888877754 442 211 1111111 2245
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCccE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
+.++.+...++|++++.+.+.+-. +.+.+.+.++ +||.+=..+++ ++. .+| .+|..|+.--+..|.-.+
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~i--PvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i 123 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASNT--PVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNV 123 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHTC--CEEEESSSCSSSSSEEECBCHHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCCC--CEEEEeeccCCCCCCEEEEChHHHHHHHHHHHHHCCCCeE
Confidence 678888889999999998775532 2234444565 46655333332 121 344 678888766555555666
Q ss_pred EEcC
Q 009804 308 CLIP 311 (525)
Q Consensus 308 iLIP 311 (525)
+++-
T Consensus 124 ~~i~ 127 (275)
T 3d8u_A 124 GFIG 127 (275)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6664
No 43
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=76.74 E-value=1.3 Score=46.11 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=58.4
Q ss_pred cceeccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhh--hccCCeEeCChhhhhcccccCcccc
Q 009804 145 QKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRG--FYAKNTIALTPKGVNDIHKRGGTVL 222 (525)
Q Consensus 145 ~~~~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~G--L~~~~~i~Lt~~~v~~i~~~GGtiL 222 (525)
+++-+.....+|+||+== ..|.+-..++.++..|.. .+ .+||-=..=..- +.+.+ ....+ ... +
T Consensus 30 ~~l~w~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~-~~-~~V~ve~~~~~~~~~~~~~----~~~~~---~~~----~ 95 (365)
T 3pfn_A 30 QRLTWNKSPKSVLVIKKM-RDASLLQPFKELCTHLME-EN-MIVYVEKKVLEDPAIASDE----SFGAV---KKK----F 95 (365)
T ss_dssp CBEEESSCCCEEEEEECT-TCGGGHHHHHHHHHHHHH-TS-CEEEEEHHHHHSHHHHHCS----TTHHH---HHH----C
T ss_pred cccccCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH-CC-CEEEEehHHhhhhcccccc----ccccc---ccc----c
Confidence 345555556799999842 357788889999998876 34 466531110000 00000 00000 000 0
Q ss_pred cccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 223 GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 223 GSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
-+-+. +++.+ ...+|.++++|||||+-.|..+.. +..++|+||=
T Consensus 96 ~~~~~--~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN 139 (365)
T 3pfn_A 96 CTFRE--DYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFH 139 (365)
T ss_dssp EEECT--TTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEE
T ss_pred ccccc--Chhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEc
Confidence 00000 01111 147899999999999988776542 4457899984
No 44
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=76.51 E-value=47 Score=30.53 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=75.9
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
++||++...-.-|-...+++++...+.+ +|. ++.- .+ . .+........+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~---------------~~---------~-----~~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AGV-TLLH---------------RS---------T-----KDDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HTC-EEEE---------------CC---------C-----SSTTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEEE---------------EC---------C-----CCCCCHHHHHH
Confidence 4899999888888889999999888865 452 2210 00 0 00111123456
Q ss_pred HHHHHHHcC-CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--C--CCCc--hhhHHHHHHhhhc----
Q 009804 234 IVDSIQDRG-INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--I--PVPL--LTWFIAMYATLAS---- 302 (525)
Q Consensus 234 iv~~l~~~~-Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I--~gtD--~sG~IAl~aaLAs---- 302 (525)
.++.|...+ +|++++.+-+..... ...+.+.+.++ +||.+-..++++ . ..+| .+|+.|+.--+..
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~~--~~~~~~~~~~i--pvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~ 125 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDLT--PSVAQYRARNI--PVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLS 125 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTTH--HHHHHHHHTTC--CEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHHH--HHHHHHHHCCC--cEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhcCcC
Confidence 788888889 999999986543221 12234455564 566654444432 1 1345 7888887766665
Q ss_pred CCccEEEcCC
Q 009804 303 RDVDCCLIPE 312 (525)
Q Consensus 303 ~~ad~iLIPE 312 (525)
|.-.+.++-.
T Consensus 126 G~~~i~~i~~ 135 (276)
T 3ksm_A 126 KERNIALLRL 135 (276)
T ss_dssp SCEEEEECBC
T ss_pred CCceEEEEEc
Confidence 6677877753
No 45
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=76.24 E-value=35 Score=31.64 Aligned_cols=118 Identities=7% Similarity=-0.043 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||++...-.-|=...++.++...+.. +|. ++.- ..+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HGY-QVLI-------------------------------GNSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-CEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCCCCHHHHH
Confidence 45799998776778888888888887764 453 2211 01111123356
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHH-HHHHcCCceeEEEeeccccCC-CCCCc--hhhHHHHHHhhhcCCccEE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYE-EVRRRGLKVVVAGIPKTIDND-IPVPL--LTWFIAMYATLASRDVDCC 308 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e-~~~~~g~~i~VIgIPKTIDND-I~gtD--~sG~IAl~aaLAs~~ad~i 308 (525)
++++.+...++|++++.+.+ . ...+ .+.+.++ +||.+=..+++. ..++| .+|..|+.--+..|.-.++
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~---~---~~~~~~l~~~~i--PvV~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~ 126 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN---E---NIIENTLTDHHI--PFVFIDRINNEHNGISTNHFKGGQLQAEVVRKGKGKNVL 126 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG---H---HHHHHHHHHC-C--CEEEGGGCC---------HHHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHhCCCCEEEEecCC---h---HHHHHHHHcCCC--CEEEEeccCCCCCeEEechHHHHHHHHHHHHHCCCCeEE
Confidence 78888999999999999832 1 1234 4555665 466543333222 23455 7889888766666666777
Q ss_pred EcC
Q 009804 309 LIP 311 (525)
Q Consensus 309 LIP 311 (525)
++-
T Consensus 127 ~i~ 129 (277)
T 3e61_A 127 IVH 129 (277)
T ss_dssp EEE
T ss_pred EEe
Confidence 774
No 46
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=76.01 E-value=53 Score=30.91 Aligned_cols=119 Identities=8% Similarity=-0.033 Sum_probs=71.5
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+|||+. .-.-|-...+++++...+.. +|. ++.-+ .+....+.
T Consensus 11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~--------------------------------~~~~~~~~ 55 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATR-RGY-DVMLS--------------------------------AVAPSRAE 55 (289)
T ss_dssp --CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TTC-EEEEE--------------------------------EEBTTBCH
T ss_pred CCCEEEEEE-ecCCchHHHHHHHHHHHHHH-CCC-EEEEE--------------------------------eCCCCHHH
Confidence 345889888 66778888889998888764 552 33210 11111225
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad 306 (525)
.+.++.|...++|++++.+.+.+.. ..+.+.+ + ++||.+=..+++ ++. .+| .+|+.|+.--+..|.-.
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~-~--iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~ 128 (289)
T 3k9c_A 56 KVAVQALMRERCEAAILLGTRFDTD----ELGALAD-R--VPALVVARASGLPGVGAVRGDDVAGITLAVDHLTELGHRN 128 (289)
T ss_dssp HHHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT-T--SCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc-C--CCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCCc
Confidence 6677888889999999999877542 2233433 5 456644322221 111 233 78888887666666667
Q ss_pred EEEcCC
Q 009804 307 CCLIPE 312 (525)
Q Consensus 307 ~iLIPE 312 (525)
+.++-.
T Consensus 129 I~~i~~ 134 (289)
T 3k9c_A 129 IAHIDG 134 (289)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 777643
No 47
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=75.24 E-value=28 Score=34.10 Aligned_cols=119 Identities=11% Similarity=0.036 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~ 231 (525)
..+||++...-.-|-...++.++...+.. +|. +++ +..+.. ....
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 115 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GGL-QLL--------------------------------LGYTAYSPERE 115 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHHH
Confidence 35899998877778888888888888764 552 332 111111 1234
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC---CCCCc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND---IPVPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND---I~gtD--~sG~IAl~aaLAs~~ad 306 (525)
.++++.|...++|++++.+.+.+.. ..+.+.+.+++ ||.+=...+.+ .-.+| .+|+.|+.--+..|+-.
T Consensus 116 ~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~iP--vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r~ 189 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLSYDGHTEQ----TIRLLQRASIP--IVEIWEKPAHPIGHTVGFSNERAAYDMTNALLARGFRK 189 (355)
T ss_dssp HHHHHHHHHTCCSEEEEECSCCCHH----HHHHHHHCCSC--EEEESSCCSSCSSEEEECCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCCCC--EEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCCe
Confidence 5778888899999999998776542 23444556754 56551111111 12344 78888876666665566
Q ss_pred EEEcC
Q 009804 307 CCLIP 311 (525)
Q Consensus 307 ~iLIP 311 (525)
+.+|-
T Consensus 190 I~~i~ 194 (355)
T 3e3m_A 190 IVFLG 194 (355)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 66653
No 48
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=75.21 E-value=46 Score=31.31 Aligned_cols=120 Identities=11% Similarity=0.141 Sum_probs=72.0
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~ 231 (525)
..+|||+...-.-|-...++.++...+.. +|. ++. +..+.. ....
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 61 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATM-YKY-NII--------------------------------LSNSDQNMEKE 61 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHHH
Confidence 35899998766677778888888877754 442 221 001111 1224
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad 306 (525)
.+.++.|...++|++++.+.+.+.. ..+.+.+.++ +||.+-..+++ ++. .+| .+|+.|+.--+..|.-.
T Consensus 62 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~i--PvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~ 135 (289)
T 2fep_A 62 LHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSPV--PIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTD 135 (289)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSSS--CEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcCC--CEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHCCCCe
Confidence 5678888899999999998765422 2234445564 46655333332 222 244 77888876655555566
Q ss_pred EEEcCC
Q 009804 307 CCLIPE 312 (525)
Q Consensus 307 ~iLIPE 312 (525)
+.+|-.
T Consensus 136 I~~i~~ 141 (289)
T 2fep_A 136 IAFVSG 141 (289)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 766643
No 49
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=74.97 E-value=25 Score=34.14 Aligned_cols=119 Identities=11% Similarity=-0.012 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~ 231 (525)
..+||++...-.-|-...+++++-..+.. +|. ++. +..+.. ....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AGY-QML--------------------------------IGNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHHH
Confidence 35899998776777788899999888764 552 321 111111 1234
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC--CCCCCc--hhhHHHHHHhhhcCCccE
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN--DIPVPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--DI~gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
.++++.|...++|++++.+-+.+.. +.+.+.+.+++ ||.+=...+. +...+| .+|++|+.--+..|+-.+
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~iP--vV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I 181 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEP----FERILSQHALP--VVYMMDLADDGRCCVGFSQEDAGAAITRHLLSRGKRRI 181 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTT----HHHHHHHTTCC--EEEEESCCSSSCCEEECCHHHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHH----HHHHHhcCCCC--EEEEeecCCCCCeEEEECHHHHHHHHHHHHHHCCCCeE
Confidence 5677888889999999998765542 22344455754 5544222222 222355 778888766666656666
Q ss_pred EEcC
Q 009804 308 CLIP 311 (525)
Q Consensus 308 iLIP 311 (525)
.+|-
T Consensus 182 ~~i~ 185 (339)
T 3h5o_A 182 GFLG 185 (339)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6663
No 50
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=74.86 E-value=0.97 Score=44.15 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=25.0
Q ss_pred cCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 241 RGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 241 ~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
.+.|.++++|||||+..|..... + .++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEE
Confidence 37899999999999987664321 3 57899997
No 51
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=74.85 E-value=20 Score=33.79 Aligned_cols=111 Identities=12% Similarity=-0.003 Sum_probs=64.8
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
.+|||+...-.-|-...++.++...+.. +|..++. +-.+... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4789998766677778888888877753 4410111 1111111 2245
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-------CC--CCCc--hhhHHHHHHhhh
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-------DI--PVPL--LTWFIAMYATLA 301 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-------DI--~gtD--~sG~IAl~aaLA 301 (525)
+.++.+...++|++++.+.+.+.. ....+.+.+.++ +||.+-...++ .+ ..+| .+|+.|+.--+.
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~ 125 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQNV--PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAK 125 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTTC--CEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCCC--cEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHH
Confidence 677888889999999998776532 122344445564 56655333332 11 2244 778887665555
No 52
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=73.53 E-value=55 Score=30.50 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+|||+...-.-|=...++.++...+.. +|. ++.-+ -+.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NKY-EALVA-------------------------------TSQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TTC-EEEEE-------------------------------ECSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cCC-EEEEE-------------------------------CCCCCHHHH
Confidence 446899999877788888899999888864 553 33210 011111234
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CC--CCc--hhhHHHHHHhhhc--C
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IP--VPL--LTWFIAMYATLAS--R 303 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~--gtD--~sG~IAl~aaLAs--~ 303 (525)
.+.++.|...++|++++.+.+..... .+.+.+.+.++ +||.+=..+++. ++ ++| .+|+.|+.--+.. +
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~i--PvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g 129 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAGI--PVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIK 129 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTTC--CEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcCC--CEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhcc
Confidence 57788888999999999988765421 22344455564 566553333331 11 133 7888887655552 3
Q ss_pred Cc-----cEEEcC
Q 009804 304 DV-----DCCLIP 311 (525)
Q Consensus 304 ~a-----d~iLIP 311 (525)
+- .+++|-
T Consensus 130 ~~~~~~~~i~~i~ 142 (293)
T 3l6u_A 130 QTGRSTGRIVEIT 142 (293)
T ss_dssp HHSCSCEEEEEEE
T ss_pred CCCCCCceEEEEE
Confidence 33 677763
No 53
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=73.44 E-value=1.1 Score=46.79 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCcchHHHHHHHHHHHHcCCce-eEEEee
Q 009804 241 RGINQVYIIGGDGTQKGASVIYEEVRRRGLKV-VVAGIP 278 (525)
Q Consensus 241 ~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i-~VIgIP 278 (525)
.+.|.+|++|||||+..|..... +..+ +|+||+
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN 146 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFA 146 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEE
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEE
Confidence 45899999999999998775432 2345 799996
No 54
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=72.49 E-value=25 Score=34.45 Aligned_cols=120 Identities=10% Similarity=0.141 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~ 231 (525)
..+||++...-.-|-...++.++-..+.. +|. ++. +..+... ...
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 111 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASK-AGL-ATI--------------------------------ITNSNEDATTM 111 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHH-TTC-CEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHHH
Confidence 35789998765667777788888777754 442 211 0011111 224
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC--CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN--DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
.+.++.|...++|++++.+.+.+- ...+.+.+.++ +||.+=..+++ +++ .+| .+|++|+.--+..|.-
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~i--PvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~ 185 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECA----NQLEDLQKQGM--PVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAHNNAL 185 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGH----HHHHHHHHC-C--CEEEESSCCSCC-CCCEEEEECHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCh----HHHHHHHhCCC--CEEEEcccCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC
Confidence 567888888999999999877652 12234445564 46655443433 222 233 7788887666666566
Q ss_pred cEEEcCC
Q 009804 306 DCCLIPE 312 (525)
Q Consensus 306 d~iLIPE 312 (525)
.+.+|-.
T Consensus 186 ~I~~i~~ 192 (348)
T 3bil_A 186 PIGYLSG 192 (348)
T ss_dssp SEEEECC
T ss_pred eEEEEeC
Confidence 7777643
No 55
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=72.00 E-value=14 Score=35.08 Aligned_cols=120 Identities=13% Similarity=0.032 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCC-----ChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC
Q 009804 152 DEVYACIVTCGG-----LCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR 226 (525)
Q Consensus 152 ~~~~iaIvtsGG-----~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR 226 (525)
+..+|||++... .-|-...+++++...+.. +|. +++ +..+.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~ 51 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ-HGY-GTQ--------------------------------TTVSN 51 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT-TTC-EEE--------------------------------ECCCC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEcCC
Confidence 345899998543 345566778888777753 442 221 11111
Q ss_pred C-CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC---CCC--Cc--hhhHHHHHH
Q 009804 227 G-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND---IPV--PL--LTWFIAMYA 298 (525)
Q Consensus 227 ~-~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND---I~g--tD--~sG~IAl~a 298 (525)
. .+...++++.|...++|++++.+.+.+.. +.+.+.+.++ +||.+=..+++. +.. +| .+|+.|+.-
T Consensus 52 ~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~i--PvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~ 125 (295)
T 3hcw_A 52 NMNDLMDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDESM--PFIVIGKPTSDIDHQFTHIDNDNILASENLTRH 125 (295)
T ss_dssp SHHHHHHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTTC--CEEEESCCCSSGGGGSCEEEECHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCCC--CEEEECCCCccccCCceEEecCcHHHHHHHHHH
Confidence 1 12345678889999999999998775432 3344455675 456443333321 222 23 788888876
Q ss_pred hhhcCCccEEEcC
Q 009804 299 TLASRDVDCCLIP 311 (525)
Q Consensus 299 aLAs~~ad~iLIP 311 (525)
-+..|.-.+.+|-
T Consensus 126 L~~~G~~~I~~i~ 138 (295)
T 3hcw_A 126 VIEQGVDELIFIT 138 (295)
T ss_dssp HHHHCCSEEEEEE
T ss_pred HHHcCCccEEEEc
Confidence 6666666676663
No 56
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=71.08 E-value=68 Score=29.99 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
+..+||++...-..|-...+++++...+.. +| .++. ++..+... ..
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~ 49 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKE-FN-LNAS-------------------------------QVGPSSTDAPQ 49 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHH-TT-EEEE-------------------------------EECCSSSCHHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EECCCCCCHHH
Confidence 346899998766667777888888777754 44 1221 01111111 22
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc-ccC-CCC--CCc--hhhHHHHHHhhh-cC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT-IDN-DIP--VPL--LTWFIAMYATLA-SR 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT-IDN-DI~--gtD--~sG~IAl~aaLA-s~ 303 (525)
..+.++.|...++|++++.+.+.. ....+.+.+.+.++ +||.+=.. .++ ++. .+| .+|++|+..-+. .+
T Consensus 50 ~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~~~~i--pvV~~~~~~~~~~~~~~v~~d~~~~g~~a~~~l~~~~g 125 (303)
T 3d02_A 50 QVKIIEDLIARKVDAITIVPNDAN--VLEPVFKKARDAGI--VVLTNESPGQPSANWDVEIIDNEKFAAEYVEHMAKRMG 125 (303)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCHH--HHHHHHHHHHHTTC--EEEEESCTTCTTCSEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEecCChH--HHHHHHHHHHHCCC--eEEEEecCCCCCCceEEEecCHHHHHHHHHHHHHHHhC
Confidence 345678888899999999887542 22223344555564 56654332 221 221 245 778888776655 33
Q ss_pred Cc-cEEEcC
Q 009804 304 DV-DCCLIP 311 (525)
Q Consensus 304 ~a-d~iLIP 311 (525)
+- .++++-
T Consensus 126 ~~~~i~~i~ 134 (303)
T 3d02_A 126 GKGGYVIYV 134 (303)
T ss_dssp TCEEEEEEC
T ss_pred cCceEEEEe
Confidence 43 666553
No 57
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=70.75 E-value=44 Score=31.38 Aligned_cols=120 Identities=8% Similarity=-0.040 Sum_probs=70.0
Q ss_pred CeEEEEEcCC-C---ChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC
Q 009804 153 EVYACIVTCG-G---LCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG 228 (525)
Q Consensus 153 ~~~iaIvtsG-G---~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~ 228 (525)
..+||++... - .-|-...++.++...+.. +|. ++.- .+ +....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~---------------~~----------------~~~~~ 50 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VNY-FVLP---------------FP----------------FSEDR 50 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TTC-EEEE---------------CC----------------CCSST
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cCC-EEEE---------------Ee----------------CCCch
Confidence 4578888865 3 567778888888887764 442 2210 00 00111
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASR 303 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~ 303 (525)
....++++.+...++|++++.+.+.+.. ..+.+.+.++ +||.+=..+++ ++. .+| .+|++|+.--+..|
T Consensus 51 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~i--PvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 124 (287)
T 3bbl_A 51 SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQKF--PFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRG 124 (287)
T ss_dssp TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTTC--CEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcCC--CEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCC
Confidence 2235677888889999999998765432 2234445564 56655333332 122 133 77888876555555
Q ss_pred CccEEEcC
Q 009804 304 DVDCCLIP 311 (525)
Q Consensus 304 ~ad~iLIP 311 (525)
.-.+.+|-
T Consensus 125 ~~~I~~i~ 132 (287)
T 3bbl_A 125 HRRIAILA 132 (287)
T ss_dssp CCCEEEEE
T ss_pred CCeEEEEe
Confidence 56676664
No 58
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=70.68 E-value=25 Score=34.01 Aligned_cols=122 Identities=10% Similarity=-0.047 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
+..+||+++..-.-|-...++.++...+.. +|. ++. +-.+... ..
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~ 49 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGL-PYV--------------------------------PLTTEGSSEK 49 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECTTCHHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EecCCCCHHH
Confidence 345899998766678788888888887754 442 111 0011111 22
Q ss_pred HHHHHHHHHHcC--CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC---------CC--CCCc--hhhHHH
Q 009804 231 TSKIVDSIQDRG--INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN---------DI--PVPL--LTWFIA 295 (525)
Q Consensus 231 ~~~iv~~l~~~~--Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN---------DI--~gtD--~sG~IA 295 (525)
..+.++.|...+ +|++++.+.+... ...+.+.+.+.+ ++||.+-..+++ .+ ..+| .+|++|
T Consensus 50 ~~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a 125 (332)
T 2rjo_A 50 GIADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEET 125 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEECCCCCcccchhcccceeEEEccChHHHHHHH
Confidence 346678888888 9999998876532 112334444556 456665444433 11 2344 778888
Q ss_pred HHHhhh--cCCccEEEcC
Q 009804 296 MYATLA--SRDVDCCLIP 311 (525)
Q Consensus 296 l~aaLA--s~~ad~iLIP 311 (525)
+..-+. .+.-.+++|-
T Consensus 126 ~~~L~~~~~G~~~I~~i~ 143 (332)
T 2rjo_A 126 ATQLFKSMGGKGGVVALG 143 (332)
T ss_dssp HHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHcCCCCeEEEEE
Confidence 776655 4455676664
No 59
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=69.20 E-value=47 Score=31.12 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
+..+||+++..-..|-...+++++...+.. +|. ++. +-.+... ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~ 52 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK-NGY-RIL--------------------------------LCNTESDLAR 52 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHH
Confidence 345899998766677777888888777754 442 221 0011111 22
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
..+.++.+...++|++++.+.+.+.. ..+.+. .+ ++||.+=..+++ ++. .+| .+|++|+.--+..|.-
T Consensus 53 ~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~-~~--iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~ 125 (285)
T 3c3k_A 53 SRSCLTLLSGKMVDGVITMDALSELP----ELQNII-GA--FPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKSGKK 125 (285)
T ss_dssp HHHHTHHHHTTCCSEEEECCCGGGHH----HHHHHH-TT--SSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHh-cC--CCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHcCCC
Confidence 34667888889999999998765422 223344 45 456655333332 222 234 7788887655555556
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
.+.+|-
T Consensus 126 ~I~~i~ 131 (285)
T 3c3k_A 126 RIALIN 131 (285)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 666664
No 60
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=68.14 E-value=25 Score=34.18 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC-CCCcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR-GGHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR-~~~d~ 231 (525)
..+||++...-.-|=...+++++...+.. +|. +++ +..+. ..+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 113 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TEL-QPV--------------------------------VGVTDYLPEKE 113 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SSS-EEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCHHHH
Confidence 35899998766677777888888877753 442 221 11111 11234
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCC--CCCc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDI--PVPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI--~gtD--~sG~IAl~aaLAs~~ad 306 (525)
.+.++.|...++|++++.+-+.+.. +.+.+.+.+++ ||.+=..-+ ... -++| .+|++|+.--+..|+-.
T Consensus 114 ~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~iP--vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~ 187 (344)
T 3kjx_A 114 EKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAGIP--VVEIMDSDGKPVDAMVGISHRRAGREMAQAILKAGYRR 187 (344)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCSSC--EEEEEECSSCCSSEEEEECHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCCCC--EEEEeCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCCe
Confidence 5678888899999999998776542 33445556755 454411111 111 2344 78888876555555445
Q ss_pred EEEc
Q 009804 307 CCLI 310 (525)
Q Consensus 307 ~iLI 310 (525)
+.+|
T Consensus 188 I~~i 191 (344)
T 3kjx_A 188 IGFM 191 (344)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 5444
No 61
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=67.23 E-value=7.7 Score=39.46 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
+..+++++.+++++.|.++-|||-=.++.|..++-. ++ +++|.||-|
T Consensus 73 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTT 119 (370)
T 1jq5_A 73 NEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---LD--AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HT--CEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---cC--CCEEEeccc
Confidence 347788999999999999999999999999988832 35 679999999
No 62
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=67.06 E-value=11 Score=35.84 Aligned_cols=121 Identities=14% Similarity=-0.030 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCChhhHH-HHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCc
Q 009804 152 DEVYACIVTCGGLCPGLN-TVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN-~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d 230 (525)
+..+||+++..-.-|-.. .+++++...+.. +|. ++.-+ -+....+.
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~ 58 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANA-NGK-TILIA-------------------------------NTGGSSER 58 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TTC-EEEEE-------------------------------ECTTCHHH
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------eCCCChHH
Confidence 345789988766666677 888888887764 452 33210 01111123
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CC--CCc--hhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IP--VPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~--gtD--~sG~IAl~aaLAs~~ 304 (525)
..++++.|...++|++++.+.+... ..+.+.+.+ ++||.+=..+++. +. .+| .+|+.|+.--+..|.
T Consensus 59 ~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~~~--iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~ 131 (301)
T 3miz_A 59 EVEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGDVS--IPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLERGH 131 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTTCC--CCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCCEEEEecCCccH-----HHHHHHhCC--CCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHHcCC
Confidence 4678888999999999999877553 223333445 4566554444332 22 234 789998876666666
Q ss_pred ccEEEcCC
Q 009804 305 VDCCLIPE 312 (525)
Q Consensus 305 ad~iLIPE 312 (525)
-.+.++-.
T Consensus 132 ~~I~~i~~ 139 (301)
T 3miz_A 132 RRIGYIRL 139 (301)
T ss_dssp CSEEEEEC
T ss_pred CeEEEEec
Confidence 67776643
No 63
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=67.04 E-value=80 Score=29.23 Aligned_cols=122 Identities=9% Similarity=0.035 Sum_probs=70.7
Q ss_pred CCeEEEEEcCC--CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-C
Q 009804 152 DEVYACIVTCG--GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-G 228 (525)
Q Consensus 152 ~~~~iaIvtsG--G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~ 228 (525)
...+||+++.. -..|-...++.++...+.. +|. ++. +-.+.. .
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~ 63 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KGR-QLL--------------------------------LADGKHSA 63 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TTC-EEE--------------------------------EECCTTSH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCH
Confidence 34589999865 5567777888888777754 442 221 001111 1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-cCCceeEEEeeccccC-CC--CCCc--hhhHHHHHHhhhc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-RGLKVVVAGIPKTIDN-DI--PVPL--LTWFIAMYATLAS 302 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-~g~~i~VIgIPKTIDN-DI--~gtD--~sG~IAl~aaLAs 302 (525)
....+.++.|...++|++++.+.+.+-. .+ +.+.+ .++ +||.+-..+++ ++ ..+| .+|+.|+.--+..
T Consensus 64 ~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~i--PvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~ 137 (296)
T 3brq_A 64 EEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHSQ--PIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINA 137 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCSS--CEEEESCCCSSSGGGEECCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCCC--CEEEEccccCCCCCCEEEEchHHHHHHHHHHHHHC
Confidence 2245677888889999999998875432 22 34455 564 46655333332 11 2345 6788887665555
Q ss_pred CCccEEEcCCC
Q 009804 303 RDVDCCLIPES 313 (525)
Q Consensus 303 ~~ad~iLIPE~ 313 (525)
|.-.+++|-..
T Consensus 138 G~~~I~~i~~~ 148 (296)
T 3brq_A 138 GHQEIAFLTGS 148 (296)
T ss_dssp TCCSEEEECCC
T ss_pred CCceEEEEcCC
Confidence 56677777543
No 64
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=65.38 E-value=53 Score=30.82 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
+.+||++...-.-|=...+++++...+.. +| .+++ ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EeCC-CCHHHHH
Confidence 57899999877778888889998888764 44 2221 1111 1122345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec-cccC------CCCC--Cc--hhhHHHHHHhh
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK-TIDN------DIPV--PL--LTWFIAMYATL 300 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK-TIDN------DI~g--tD--~sG~IAl~aaL 300 (525)
+.++.|...++|++++.+-+.... ..+.+.+.+.|+ +||.+=. ..+. .++. +| .+|+.|+..-+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~ 122 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYDM--KVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELY 122 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTTC--EEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCCC--cEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHH
Confidence 678888899999999999876532 222344555675 5564431 1221 1222 34 67877765443
No 65
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=64.98 E-value=23 Score=32.88 Aligned_cols=117 Identities=7% Similarity=-0.204 Sum_probs=59.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 155 YACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 155 ~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
+|||+...-.-|-...++.++...+.. +|. ++.- .+ +........+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~---------------~~----------------~~~~~~~~~~~ 47 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLE-QRY-DLAL---------------FP----------------ILSLARLKRYL 47 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGG-GTC-EEEE---------------CC----------------CCSCCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH-CCC-EEEE---------------Ee----------------CCCchhhHHHH
Confidence 477777665667778888888877754 442 2210 00 00011123456
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC--Cc--hhhHHHHHHhhhcCCccEEEc
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV--PL--LTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g--tD--~sG~IAl~aaLAs~~ad~iLI 310 (525)
++.+...++|++++.+.+.+. ...+.+.+.+ ++||.+-...++ +.. +| .+|..|+..-+..|.-.+++|
T Consensus 48 ~~~l~~~~vdgiI~~~~~~~~----~~~~~~~~~~--iPvV~~~~~~~~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i 120 (276)
T 2h0a_A 48 ENTTLAYLTDGLILASYDLTE----RFEEGRLPTE--RPVVLVDAQNPR-YDSVYLDNRLGGRLAGAYLARFPGPIFAIA 120 (276)
T ss_dssp ------CCCSEEEEESCCCC----------CCSCS--SCEEEESSCCTT-SEEEEECSHHHHHHHHHHHTTSSSCEEEEE
T ss_pred HHHHHhCCCCEEEEecCCCCH----HHHHHHhhcC--CCEEEEeccCCC-CCEEEEccHHHHHHHHHHHHHcCCCeEEEE
Confidence 677788999999999987653 1223333345 556665444332 222 33 778888776666555566665
Q ss_pred C
Q 009804 311 P 311 (525)
Q Consensus 311 P 311 (525)
-
T Consensus 121 ~ 121 (276)
T 2h0a_A 121 V 121 (276)
T ss_dssp E
T ss_pred e
Confidence 3
No 66
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=64.05 E-value=29 Score=32.48 Aligned_cols=104 Identities=12% Similarity=0.202 Sum_probs=63.0
Q ss_pred cCCCeEEEEEcCC-CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC
Q 009804 150 ESDEVYACIVTCG-GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG 228 (525)
Q Consensus 150 ~~~~~~iaIvtsG-G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~ 228 (525)
++...+|+|++.| -|-| +...+...|.. +|+. .++. +.+--|..
T Consensus 4 ~~~~~~V~IimgS~SD~~----v~~~a~~~L~~-~gi~-----------------~ev~-------------V~SaHR~p 48 (174)
T 3lp6_A 4 AGERPRVGVIMGSDSDWP----VMADAAAALAE-FDIP-----------------AEVR-------------VVSAHRTP 48 (174)
T ss_dssp --CCCSEEEEESCGGGHH----HHHHHHHHHHH-TTCC-----------------EEEE-------------ECCTTTCH
T ss_pred CCCCCeEEEEECcHHhHH----HHHHHHHHHHH-cCCC-----------------EEEE-------------EECCCCCH
Confidence 3455678888732 3577 67777777754 6742 1110 45556777
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcC-CcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhh
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGG-DGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLA 301 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGG-dgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLA 301 (525)
+...+++++.++.+++.+|.+-| .+.+-+.. +- ....+|||||-...+ +. |+=|+.+.+.
T Consensus 49 ~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~~-l~-----G~daLlS~vq 109 (174)
T 3lp6_A 49 EAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AA-----ATPLPVIGVPVPLGR-LD-----GLDSLLSIVQ 109 (174)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCSS-GG-----GHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCCCC-CC-----CHHHHHHHhh
Confidence 78899999999999997776644 44444433 22 235789999965432 33 4445554444
No 67
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=63.59 E-value=37 Score=32.26 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d~ 231 (525)
+.+||++...-..|-...++.++-..+.. +|. ++. +..+.. ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RGI-TLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EeCCCCCHHHH
Confidence 36899999876777777888888777754 452 221 101111 1224
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcch-HHHHHHHHHHHHcCCceeEEEeeccccCC-----C--CCCc--hhhHHHHHHhhh
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQ-KGASVIYEEVRRRGLKVVVAGIPKTIDND-----I--PVPL--LTWFIAMYATLA 301 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~-~~A~~L~e~~~~~g~~i~VIgIPKTIDND-----I--~gtD--~sG~IAl~aaLA 301 (525)
.+.++.|...++|++++.+.+... .. ..+.+.+.++ +||.+=..++++ + .++| .+|+.|+.--+.
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~i--PvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 122 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAEI--PVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 122 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTTC--CEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCCC--CEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHH
Confidence 567788888999999999877542 22 2233444564 566554333321 1 1244 678887755444
Q ss_pred cC---CccEEEcC
Q 009804 302 SR---DVDCCLIP 311 (525)
Q Consensus 302 s~---~ad~iLIP 311 (525)
.+ .-.++++-
T Consensus 123 ~g~g~~~~I~~i~ 135 (306)
T 2vk2_A 123 EVNGKPCNVVELQ 135 (306)
T ss_dssp HHTTSCEEEEEEE
T ss_pred hcCCCCCeEEEEE
Confidence 32 34566664
No 68
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=62.70 E-value=1.1e+02 Score=29.41 Aligned_cols=121 Identities=7% Similarity=0.099 Sum_probs=72.3
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d 230 (525)
...+||++...-.-|-...++.++-..+.. +|. ++. +..+.. .+.
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~ 102 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KGY-TLI--------------------------------LGNAWNNLEK 102 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHH
Confidence 345899998766677778888888877754 442 221 101111 123
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH-cCCceeEEEeeccccC-C---CCCCc--hhhHHHHHHhhhcC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR-RGLKVVVAGIPKTIDN-D---IPVPL--LTWFIAMYATLASR 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~-~g~~i~VIgIPKTIDN-D---I~gtD--~sG~IAl~aaLAs~ 303 (525)
..+.++.|...++|++++.+.+.+... .+.+++ .++ +||.+=..+++ + .-.+| .+|+.|+.--+..|
T Consensus 103 ~~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~~~i--PvV~~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 176 (340)
T 1qpz_A 103 QRAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEYRHI--PMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERG 176 (340)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHTTTTS--CEEEEEESSCCCSSSEEEECCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhhCCC--CEEEEecccCCCCCCCEEEECHHHHHHHHHHHHHHCC
Confidence 456788888999999999987754322 223333 354 45555433332 2 12345 77888876655666
Q ss_pred CccEEEcCC
Q 009804 304 DVDCCLIPE 312 (525)
Q Consensus 304 ~ad~iLIPE 312 (525)
+-.+.+|-.
T Consensus 177 ~~~I~~i~g 185 (340)
T 1qpz_A 177 HREIGVIPG 185 (340)
T ss_dssp CCCEEEECC
T ss_pred CCEEEEEeC
Confidence 677777743
No 69
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=61.45 E-value=1.2e+02 Score=29.18 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
...+||++...-.-|-...++.++...+.. +|. ++. +..+... ..
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~ 107 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM-YKY-NMI--------------------------------LANSDNDVEK 107 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEECCCChHH
Confidence 345899998766677777888888777754 442 221 1011111 22
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
..+.++.|...++|++++.+.+.+... .+.+.+.+++ ||.+-..+++ ++. .+| .+|++|+.--+..|+-
T Consensus 108 ~~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~~iP--vV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~ 181 (332)
T 2o20_A 108 EEKVLETFLSKQVDGIVYMGSSLDEKI----RTSLKNSRTP--VVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNK 181 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCCCHHH----HHHHHHHCCC--EEEESCCCTTSCSCEEECCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCCCC--EEEEccccCCCCCCEEEeChHHHHHHHHHHHHHCCCC
Confidence 446788888899999999987654322 2334445654 5655333332 222 244 7788887666666667
Q ss_pred cEEEcCCC
Q 009804 306 DCCLIPES 313 (525)
Q Consensus 306 d~iLIPE~ 313 (525)
.+.+|-..
T Consensus 182 ~I~~i~~~ 189 (332)
T 2o20_A 182 KIAYIMGS 189 (332)
T ss_dssp SEEEECSC
T ss_pred eEEEEeCC
Confidence 77777543
No 70
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=61.05 E-value=13 Score=38.11 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEEEeeccccCCCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRR-------------GLKVVVAGIPKTIDNDIPVP 288 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~-------------g~~i~VIgIPKTIDNDI~gt 288 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-..... .-.+++|.||-|--.|-..+
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSe~t 147 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTASEMT 147 (383)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCTTTC
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchhhcC
Confidence 4578999999999999999999999999999887655210 01367999999986655544
No 71
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=60.77 E-value=29 Score=32.58 Aligned_cols=123 Identities=11% Similarity=-0.062 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC--CCC
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR--GGH 229 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR--~~~ 229 (525)
+..+|||+...-.-|-...++.++.+.+.. +|. ++.- +.+.. ...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~ 50 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEK-QGV-NLRV-------------------------------LEAGGYPNKS 50 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EECSSTTCHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-eEEE-------------------------------EcCCCCCCHH
Confidence 346899999877788888899999888765 453 2211 11111 112
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-----C----CCCCCc--hhhHHHHHH
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-----N----DIPVPL--LTWFIAMYA 298 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-----N----DI~gtD--~sG~IAl~a 298 (525)
...+.++.+...++|++++.+.+..... ...+.+. .+ |+||.+=..++ . +..++| .+|+.|+..
T Consensus 51 ~~~~~~~~~~~~~vdgiii~~~~~~~~~--~~~~~~~-~~--iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~ 125 (304)
T 3o1i_D 51 RQEQQLALCTQWGANAIILGTVDPHAYE--HNLKSWV-GN--TPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKY 125 (304)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSTTSST--TTHHHHT-TT--SCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhHHH--HHHHHHc-CC--CCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHH
Confidence 3456788888899999999987765111 1123333 45 45665422221 1 112344 789998877
Q ss_pred hhhcC-----CccEEEcCC
Q 009804 299 TLASR-----DVDCCLIPE 312 (525)
Q Consensus 299 aLAs~-----~ad~iLIPE 312 (525)
-+..+ .-.++++..
T Consensus 126 l~~~g~~~~~~~~i~~i~~ 144 (304)
T 3o1i_D 126 LAERHPKGSGKTNIALLLG 144 (304)
T ss_dssp HHTTSBTTTCCEEEEEECC
T ss_pred HHHhcccCCCCCEEEEEEC
Confidence 66665 446777743
No 72
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=60.55 E-value=1e+02 Score=29.47 Aligned_cols=121 Identities=7% Similarity=-0.044 Sum_probs=71.7
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
.+||++...-..|=...++.++...+.. +|. ++. +...+... ....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g~-~~~-------------------------------~~~~~~~d~~~q~ 50 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKA-LGI-DVT-------------------------------YDGPTEPSVSGQV 50 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHH-HTC-EEE-------------------------------ECCCSSCCHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHH-hCC-EEE-------------------------------EECCCCCCHHHHH
Confidence 4899998665667777888888777754 442 221 11111111 2245
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC---CCC--CCc--hhhHHHHHHhhh---c
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN---DIP--VPL--LTWFIAMYATLA---S 302 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN---DI~--gtD--~sG~IAl~aaLA---s 302 (525)
+.++.|...++|+|++.+-+.+... ...+.+++.| |+||.+-..+++ +.. .+| ..|.+++..-+. .
T Consensus 51 ~~i~~li~~~vdgiii~~~~~~~~~--~~~~~a~~~g--ipvV~~d~~~~~~~~~~~v~~~D~~~~g~~~~~~L~~~~~~ 126 (316)
T 1tjy_A 51 QLVNNFVNQGYDAIIVSAVSPDGLC--PALKRAMQRG--VKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDK 126 (316)
T ss_dssp HHHHHHHHTTCSEEEECCSSSSTTH--HHHHHHHHTT--CEEEEESSCCCGGGCSEEEESCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHH--HHHHHHHHCc--CEEEEecCCCCCCCceEEEecCCHHHHHHHHHHHHHHHcCC
Confidence 6788888899999999887765311 1223444556 567766444432 211 456 678888765554 3
Q ss_pred CCccEEEcC
Q 009804 303 RDVDCCLIP 311 (525)
Q Consensus 303 ~~ad~iLIP 311 (525)
++-.+++|-
T Consensus 127 g~~~i~~i~ 135 (316)
T 1tjy_A 127 EKAKVAFFY 135 (316)
T ss_dssp SSEEEEEEE
T ss_pred CCCEEEEEE
Confidence 456777774
No 73
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=60.19 E-value=14 Score=37.66 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC---------------CceeEEEeeccccCCCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG---------------LKVVVAGIPKTIDNDIPVP 288 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g---------------~~i~VIgIPKTIDNDI~gt 288 (525)
+...++++.+++.++|.+|-|||-=.++.|..++-.....+ -.+++|.||-|--.|-..+
T Consensus 75 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSevt 149 (386)
T 1rrm_A 75 TVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVT 149 (386)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTTC
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchhhhC
Confidence 45789999999999999999999999999998877552111 1367999999986554443
No 74
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=59.71 E-value=12 Score=38.10 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+..+++++.+++.+.|.++-|||--+++.|..++-. ++ +++|.||-|- .|-.
T Consensus 74 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~p~i~IPTTa-tgSe 125 (353)
T 3hl0_A 74 EVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---TD--AAQIVIPTTY-AGSE 125 (353)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HC--CEEEEEECSS-CCGG
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc-hhhh
Confidence 357889999999999999999999999999988753 45 6799999998 6543
No 75
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=59.20 E-value=12 Score=38.53 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+..+++++.+++.+.|.++-|||--+++.|..++-. ++ +++|.||-|- .|-.
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tgSe 126 (364)
T 3iv7_A 75 EVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AGSE 126 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SCGG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-cccc
Confidence 357899999999999999999999999999988753 35 5689999998 6543
No 76
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=58.74 E-value=11 Score=38.68 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+++.+.|.++-|||--+++.|..++-. ++ +++|.||-|-
T Consensus 76 ~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~~--~p~i~IPTT~ 123 (358)
T 3jzd_A 76 ESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---TG--MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS
T ss_pred HHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 347889999999999999999999999999988753 45 5699999995
No 77
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=58.44 E-value=11 Score=39.12 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcC----------------CceeEEEeeccccCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRG----------------LKVVVAGIPKTIDNDI 285 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g----------------~~i~VIgIPKTIDNDI 285 (525)
+...++++.+++.++|.+|-|||--.++.|..++-.....+ -.+++|.||-|--.|-
T Consensus 93 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgS 165 (408)
T 1oj7_A 93 ETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGS 165 (408)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCG
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhH
Confidence 34788999999999999999999999999998876432111 2368999999964433
No 78
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=58.00 E-value=61 Score=30.42 Aligned_cols=121 Identities=7% Similarity=0.042 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
+..+||++...-.-|-...++.++-..+.. +|. ++. +..+... ..
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~ 64 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ-RGY-QLL--------------------------------IACSEDQPDN 64 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHH
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEcCCCCHHH
Confidence 345899998766677778888888877764 442 221 1011111 22
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
..+.++.|...++|++++.+.+.+.. .+.+.+.+.+ ++||.+=..+++ ++. .+| .+|+.|+.--+..|+-
T Consensus 65 ~~~~~~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~ 139 (293)
T 2iks_A 65 EMRCIEHLLQRQVDAIIVSTSLPPEH---PFYQRWANDP--FPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE 139 (293)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSCTTC---HHHHTTTTSS--SCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcH---HHHHHHHhCC--CCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHHCCCC
Confidence 45678888889999999998775432 1223333445 456654333322 111 233 7788887655555556
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
.+.+|-
T Consensus 140 ~I~~i~ 145 (293)
T 2iks_A 140 TVLYLG 145 (293)
T ss_dssp SEEEEE
T ss_pred EEEEEe
Confidence 676664
No 79
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=57.15 E-value=18 Score=34.00 Aligned_cols=117 Identities=5% Similarity=-0.187 Sum_probs=66.0
Q ss_pred CCeEEEEEcC-CCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCc
Q 009804 152 DEVYACIVTC-GGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHD 230 (525)
Q Consensus 152 ~~~~iaIvts-GG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d 230 (525)
+..+|||++. .-.-|-...++.++-+.+.+ +|. ++.-+. +.....+
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~ 56 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK-QNY-NYNVVI-------------------------------CPYKTDC 56 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH-TTT-CSEEEE-------------------------------EEECTTC
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH-cCC-eEEEEe-------------------------------cCCCchh
Confidence 4468999986 45678888899999888764 453 211000 0000111
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC-----c--hhhHHHHHHhhhcC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP-----L--LTWFIAMYATLASR 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt-----D--~sG~IAl~aaLAs~ 303 (525)
..++++.+...++|++++.+-+.+. ..+.+ ..+.+ ++||.+ |++.+.. | .+|..|+.--+..|
T Consensus 57 ~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~-~~~~~--iPvV~~----~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 126 (289)
T 3g85_A 57 LHLEKGISKENSFDAAIIANISNYD---LEYLN-KASLT--LPIILF----NRLSNKYSSVNVDNYKMGEKASLLFAKKR 126 (289)
T ss_dssp GGGCGGGSTTTCCSEEEESSCCHHH---HHHHH-HCCCS--SCEEEE----SCCCSSSEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCEEEEecCCccc---HHHHH-hccCC--CCEEEE----CCCCCCCCEEEeCHHHHHHHHHHHHHHcC
Confidence 2234555667899999998876543 22222 11234 556644 3333332 3 78888877666665
Q ss_pred CccEEEcC
Q 009804 304 DVDCCLIP 311 (525)
Q Consensus 304 ~ad~iLIP 311 (525)
.-.++++-
T Consensus 127 ~~~i~~i~ 134 (289)
T 3g85_A 127 YKSAAAIL 134 (289)
T ss_dssp CCBCEEEE
T ss_pred CCEEEEEe
Confidence 56666653
No 80
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=57.02 E-value=16 Score=37.78 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDI 285 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI 285 (525)
+..+++++.+++.+.|.+|-|||--+++.|..++-. ++ +++|.||-|--.|-
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~---~~--~p~i~IPTTagtgS 144 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID---TG--ARIVIAPTIASTDA 144 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH---TT--CEEEECCSSCCCST
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCcccCCc
Confidence 457899999999999999999999999999988732 34 67999999944333
No 81
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=55.21 E-value=17 Score=33.91 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=61.3
Q ss_pred EEEEEcCC-CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 155 YACIVTCG-GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 155 ~iaIvtsG-G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
+|+|++.| -|-| +.+.+...|.. +|+. .++. +.+--|..+...+
T Consensus 8 ~V~IimgS~SD~~----v~~~a~~~l~~-~gi~-----------------~ev~-------------V~SaHR~p~~~~~ 52 (169)
T 3trh_A 8 FVAILMGSDSDLS----TMETAFTELKS-LGIP-----------------FEAH-------------ILSAHRTPKETVE 52 (169)
T ss_dssp EEEEEESCGGGHH----HHHHHHHHHHH-TTCC-----------------EEEE-------------ECCTTTSHHHHHH
T ss_pred cEEEEECcHHhHH----HHHHHHHHHHH-cCCC-----------------EEEE-------------EEcccCCHHHHHH
Confidence 68888743 4678 67777777753 6642 1110 4455677777889
Q ss_pred HHHHHHHcCCCEEEEEcCC-cchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhh
Q 009804 234 IVDSIQDRGINQVYIIGGD-GTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLA 301 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGd-gS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLA 301 (525)
++++.++.+++.+|.+-|- +.+-+. ++- ....+|||||-. ..++. |+=++.+.+.
T Consensus 53 ~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~-~~~l~-----G~dsLlS~vq 108 (169)
T 3trh_A 53 FVENADNRGCAVFIAAAGLAAHLAGT--IAA-----HTLKPVIGVPMA-GGSLG-----GLDALLSTVQ 108 (169)
T ss_dssp HHHHHHHTTEEEEEEEECSSCCHHHH--HHH-----TCSSCEEEEECC-CSTTT-----THHHHHHHHC
T ss_pred HHHHHHhCCCcEEEEECChhhhhHHH--HHh-----cCCCCEEEeecC-CCCCC-----CHHHHHHhhc
Confidence 9999999999977766544 444443 222 346789999954 33444 4445555444
No 82
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=54.20 E-value=21 Score=33.47 Aligned_cols=114 Identities=7% Similarity=-0.076 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeE-EEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CC
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKR-VLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GH 229 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~-V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~ 229 (525)
+..+||+++..-.-|-...+++++...+.. +|. + +. +..+.. .+
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~--------------------------------~~~~~~~~~ 54 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQK-EGY-TALI--------------------------------SFSTNSDVK 54 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEEE--------------------------------EECSSCCHH
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHH-CCC-CEEE--------------------------------EEeCCCChH
Confidence 446899999877778888899998888864 553 3 21 111111 12
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc-ccC-CC-CCCc--hhhHHHHHHhhhcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT-IDN-DI-PVPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT-IDN-DI-~gtD--~sG~IAl~aaLAs~~ 304 (525)
...+.++.|...++|++++.+ .. + +.+.+.+ ++||.+=.. +++ ++ -.+| .+|+.|+.--+ .|.
T Consensus 55 ~~~~~~~~l~~~~vdgiIi~~--~~------~-~~~~~~~--iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~-~G~ 122 (277)
T 3hs3_A 55 KYQNAIINFENNNVDGIITSA--FT------I-PPNFHLN--TPLVMYDSANINDDIVRIVSNNTKGGKESIKLLS-KKI 122 (277)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC--CC------C-CTTCCCS--SCEEEESCCCCCSSSEEEEECHHHHHHHHHHTSC-TTC
T ss_pred HHHHHHHHHHhCCCCEEEEcc--hH------H-HHHHhCC--CCEEEEcccccCCCCEEEEEChHHHHHHHHHHHH-hCC
Confidence 345678889999999999998 11 1 2233334 556654333 322 12 1244 78998887655 656
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-.+.++-
T Consensus 123 ~~I~~i~ 129 (277)
T 3hs3_A 123 EKVLIQH 129 (277)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 6777764
No 83
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=54.19 E-value=59 Score=31.25 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhc-CCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-CCc
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMY-GVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-GHD 230 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~-g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~~d 230 (525)
..+||+++.. .-|=...++.++...+.. + |. ++. +-.+.. ...
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~-~~g~-~l~--------------------------------i~~~~~~~~~ 50 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAMF-YNGV-SVE--------------------------------IRSAGDDNSK 50 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHTT-SSSC-EEE--------------------------------EEECTTCHHH
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHHH-cCCc-EEE--------------------------------EeCCCCCHHH
Confidence 4589999876 566666677777666643 3 31 221 101111 122
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CC--CCc--hhhHHHHHHhhhc--
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IP--VPL--LTWFIAMYATLAS-- 302 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~--gtD--~sG~IAl~aaLAs-- 302 (525)
..+.++.|...++|++++.+.+... .....+.+.+.++ +||.+-..++++ +. ++| .+|+.|+.--+..
T Consensus 51 ~~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~ 126 (325)
T 2x7x_A 51 QAEDVHYFMDEGVDLLIISANEAAP--MTPIVEEAYQKGI--PVILVDRKILSDKYTAYIGADNYEIGRSVGNYIASSLK 126 (325)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSHHH--HHHHHHHHHHTTC--CEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHH--HHHHHHHHHHCCC--eEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHHHcC
Confidence 4566788888999999999876432 1123344555564 566554333321 11 234 6788887655542
Q ss_pred CCccEEEcC
Q 009804 303 RDVDCCLIP 311 (525)
Q Consensus 303 ~~ad~iLIP 311 (525)
|.-.++++-
T Consensus 127 G~~~I~~i~ 135 (325)
T 2x7x_A 127 GKGNIVELT 135 (325)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEEEE
Confidence 455666664
No 84
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=52.32 E-value=1.2e+02 Score=27.89 Aligned_cols=118 Identities=9% Similarity=-0.053 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+||++...-.-|=...++.++...+.+ +|. ++.- ..+. ..+..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~-~~~~~ 49 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KGY-RLSV-------------------------------IDSL-TSQAG 49 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGG-GTC-EEEE-------------------------------ECSS-SSCSS
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCC-CchHH
Confidence 346899999877788888899999888764 453 3321 1111 12223
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc-cC-CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI-DN-DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI-DN-DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
.+.++.|...++|+++ ++.+.... .+.+ .+ ++||.+=..+ ++ ++. ++| .+|+.|+.--+..|.-
T Consensus 50 ~~~~~~l~~~~vdgiI-~~~~~~~~---~~~~----~~--iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~ 119 (280)
T 3gyb_A 50 TDPITSALSMRPDGII-IAQDIPDF---TVPD----SL--PPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDLGHT 119 (280)
T ss_dssp SCHHHHHHTTCCSEEE-EESCC---------------C--CCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCEEE-ecCCCChh---hHhh----cC--CCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHCCCC
Confidence 4567778889999999 88776522 2211 35 4566443333 11 111 133 7888888766666566
Q ss_pred cEEEcCCC
Q 009804 306 DCCLIPES 313 (525)
Q Consensus 306 d~iLIPE~ 313 (525)
.++++-..
T Consensus 120 ~i~~i~~~ 127 (280)
T 3gyb_A 120 HIAHLRVG 127 (280)
T ss_dssp SEEEECCS
T ss_pred eEEEEeCC
Confidence 77776544
No 85
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=52.14 E-value=20 Score=36.55 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH------c-------CCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR------R-------GLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~------~-------g~~i~VIgIPKTIDNDI~ 286 (525)
+..+++++.+++.++|.++-|||--.++.|..++-.... + .-.+++|.||-|--.|-.
T Consensus 79 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSe 149 (387)
T 3bfj_A 79 TNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTASE 149 (387)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCGG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcccc
Confidence 357899999999999999999999999999988764211 0 013679999999844443
No 86
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=51.94 E-value=10 Score=37.41 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
+..++++.+.+ +.|.++++|||||+..+.. .+..+..++++..||.==-||+.
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHH
Confidence 44555555544 8999999999999986432 22222345778889976566653
No 87
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=51.86 E-value=11 Score=38.43 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHH---------------cCCceeEEEeeccccCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRR---------------RGLKVVVAGIPKTIDND 284 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~---------------~g~~i~VIgIPKTIDND 284 (525)
+..+++++.+++.+.|.++-|||--.++.|..++-.... ++ +++|.||-|--.+
T Consensus 85 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~--~p~i~IPTTagtg 153 (371)
T 1o2d_A 85 DNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHW--LPVVEIPTTAGTG 153 (371)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCC--CCEEEEECSSCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCC--CeEEEEeCCCchh
Confidence 457889999999999999999999999999988765432 34 6799999994433
No 88
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=51.68 E-value=42 Score=31.75 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=50.5
Q ss_pred eEEEEEccchhhhcc---------CCeEeCChhhhhcccccCcccccccCC--CCcHHHHHHHHHHcCCCEEEEEcCCcc
Q 009804 186 KRVLGIDGGYRGFYA---------KNTIALTPKGVNDIHKRGGTVLGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT 254 (525)
Q Consensus 186 ~~V~Gi~~G~~GL~~---------~~~i~Lt~~~v~~i~~~GGtiLGSsR~--~~d~~~iv~~l~~~~Id~L~vIGGdgS 254 (525)
.-++|+-.|..=|++ +++=.++++..+.+...| .++-.... .-|++++++.+.+++.+-++++|+-|.
T Consensus 23 ~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~Gg 101 (212)
T 3l8m_A 23 EHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATGG 101 (212)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 478999999887765 344456667676666666 66544333 247999999999999999999999885
No 89
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=51.67 E-value=17 Score=33.83 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=56.5
Q ss_pred EEEEEcCC-CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 155 YACIVTCG-GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 155 ~iaIvtsG-G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
+|+|++.| -|-| +.+.+...|.. +|+. .++. +.+--|..+...+
T Consensus 7 ~V~IimgS~SD~~----v~~~a~~~l~~-~gi~-----------------~ev~-------------V~SaHRtp~~l~~ 51 (166)
T 3oow_A 7 QVGVIMGSKSDWS----TMKECCDILDN-LGIG-----------------YECE-------------VVSAHRTPDKMFD 51 (166)
T ss_dssp EEEEEESSGGGHH----HHHHHHHHHHH-TTCE-----------------EEEE-------------ECCTTTCHHHHHH
T ss_pred eEEEEECcHHhHH----HHHHHHHHHHH-cCCC-----------------EEEE-------------EEcCcCCHHHHHH
Confidence 68887632 3567 67777777754 6641 1111 4455577677788
Q ss_pred HHHHHHHcCCCEEEEEcC-CcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 234 IVDSIQDRGINQVYIIGG-DGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGG-dgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
.++++++.+++.+|.+-| .+.+-+.. +- ....+|||||-... ++.|.|
T Consensus 52 ~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~G~d 100 (166)
T 3oow_A 52 YAETAKERGLKVIIAGAGGAAHLPGMV--AA-----KTTLPVLGVPVKSS-TLNGQD 100 (166)
T ss_dssp HHHHTTTTTCCEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECCCT-TTTTHH
T ss_pred HHHHHHhCCCcEEEEECCcchhhHHHH--Hh-----ccCCCEEEeecCcC-CCCCHH
Confidence 888888889988777654 44444432 21 34678999996433 455443
No 90
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=51.41 E-value=16 Score=34.18 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=60.6
Q ss_pred EEEEEc-CCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 155 YACIVT-CGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 155 ~iaIvt-sGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
+|+|++ |--|-| +.+.+...|.. +|+. .+. .+.+--|..+.+.+
T Consensus 14 ~V~IimGS~SD~~----v~~~a~~~l~~-~gi~-----------------~ev-------------~V~saHR~p~~l~~ 58 (173)
T 4grd_A 14 LVGVLMGSSSDWD----VMKHAVAILQE-FGVP-----------------YEA-------------KVVSAHRMPDEMFD 58 (173)
T ss_dssp SEEEEESSGGGHH----HHHHHHHHHHH-TTCC-----------------EEE-------------EECCTTTSHHHHHH
T ss_pred eEEEEeCcHhHHH----HHHHHHHHHHH-cCCC-----------------EEE-------------EEEccccCHHHHHH
Confidence 677777 334778 77777777754 6642 111 05556677777888
Q ss_pred HHHHHHHcCCCEEEEE-cCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 234 IVDSIQDRGINQVYII-GGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 234 iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
+++..++.+++.+|.+ ||.+.+-+...= ....+|||||-... .+.|.|
T Consensus 59 ~~~~a~~~g~~ViIa~AG~aahLpgvvA~-------~t~~PVIgVPv~~~-~l~G~d 107 (173)
T 4grd_A 59 YAEKARERGLRAIIAGAGGAAHLPGMLAA-------KTTVPVLGVPVASK-YLKGVD 107 (173)
T ss_dssp HHHHHTTTTCSEEEEEEESSCCHHHHHHH-------HCCSCEEEEEECCT-TTTTHH
T ss_pred HHHHHHhcCCeEEEEeccccccchhhhee-------cCCCCEEEEEcCCC-CCCchh
Confidence 8899999999977765 677766665432 13578999997643 244444
No 91
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=51.14 E-value=15 Score=37.02 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=81.1
Q ss_pred cceeccCCCeEEEEEc-CCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhh--hccCCeEeCChhhhhcccccCccc
Q 009804 145 QKVYFESDEVYACIVT-CGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRG--FYAKNTIALTPKGVNDIHKRGGTV 221 (525)
Q Consensus 145 ~~~~f~~~~~~iaIvt-sGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~G--L~~~~~i~Lt~~~v~~i~~~GGti 221 (525)
+.+|||... +++||| |+.+-| .+. + +.|++ .|+-+.-=+.| -|.+..++++.+++-.....+..+
T Consensus 18 ~~~~~~~~M-ki~IvtDSt~dL~------~e~---~-~~~~I-~vvPL~v~~~~~~~Y~D~~~di~~~efy~~m~~~~~~ 85 (313)
T 1mgp_A 18 ENLYFQGHM-KVKILVDSTADVP------FSW---M-EKYDI-DSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAGSV 85 (313)
T ss_dssp -------CC-CEEEEEEGGGCCC------TTH---H-HHTTE-EEECCEEECTTSCEEECCCCHHHHHHHHHHHHHCSSC
T ss_pred hhhhhcCCC-CEEEEEECCCCCC------HHH---H-HhCCe-EEEEEEEEECCEEEEeCCCcCCCHHHHHHHHHhCCCC
Confidence 358887666 899999 433444 122 1 23553 33322211222 111111456776666666666655
Q ss_pred ccccCCC-CcHHHHHHHHHHcCCCEEEEEc----CCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHH
Q 009804 222 LGTSRGG-HDTSKIVDSIQDRGINQVYIIG----GDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAM 296 (525)
Q Consensus 222 LGSsR~~-~d~~~iv~~l~~~~Id~L~vIG----GdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl 296 (525)
--||.-. .++.++.+.+.+.+-+.+++|. =-||+..|...++++ ..+|.|| |.-.... --|++++
T Consensus 86 pkTSqPs~~~~~e~f~~l~~~g~d~Ii~I~iSs~LSGTy~sA~~Aa~~~---~~~I~Vi------DS~~~s~-g~g~lv~ 155 (313)
T 1mgp_A 86 PKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEV---DIPVYVV------DTLLASG-AIPLPAR 155 (313)
T ss_dssp CEEECCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHHS---SSCEEEE------ECSCCGG-GTHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHHcCCCeEEEEECCccHhHHHHHHHHHHhcC---CCeEEEE------eCCcchH-HHHHHHH
Confidence 5666643 4677777777777888888884 478888888776653 1233332 2211111 5689988
Q ss_pred HHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHH
Q 009804 297 YATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLK 332 (525)
Q Consensus 297 ~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~ 332 (525)
.|+-.. |...+++ ++++.+++..+
T Consensus 156 ~Aa~l~---------~~G~s~e---eI~~~l~~~~~ 179 (313)
T 1mgp_A 156 VAREML---------ENGATIE---EVLKKLDERMK 179 (313)
T ss_dssp HHHHHH---------HTTCCHH---HHHHHHHHHHH
T ss_pred HHHHHH---------hcCCCHH---HHHHHHHHHhh
Confidence 766433 1223444 77787776555
No 92
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=49.39 E-value=51 Score=31.71 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDT 231 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~ 231 (525)
..+||++...-.-|-...++.++-..+.. +|. ++. +..+... ...
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 105 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATM-YKY-NII--------------------------------LSNSDQNQDKE 105 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHH-HTC-EEE--------------------------------EEECCSHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCChHHH
Confidence 45899998765667778888888887764 442 221 0011111 123
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad 306 (525)
.+.++.|...++|++++.+.+.+.. ..+.+.+.+ ++||.+-..+++ ++. .+| .+|++|+.--+..|+-.
T Consensus 106 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~ 179 (332)
T 2hsg_A 106 LHLLNNMLGKQVDGIIFMSGNVTEE----HVEELKKSP--VPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKN 179 (332)
T ss_dssp HHHHHHTSCCSSCCEEECCSSCCHH----HHHHHTTSS--SCEEEESCCCSCTTSCEEEECHHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHhCCCcEEEEecCCCCHH----HHHHHHhCC--CCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHCCCCE
Confidence 4566777778999999998765532 223444445 456655333332 122 233 77888876655555667
Q ss_pred EEEcC
Q 009804 307 CCLIP 311 (525)
Q Consensus 307 ~iLIP 311 (525)
+.+|-
T Consensus 180 I~~i~ 184 (332)
T 2hsg_A 180 IAFVS 184 (332)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76664
No 93
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=49.30 E-value=60 Score=30.17 Aligned_cols=123 Identities=9% Similarity=0.041 Sum_probs=71.4
Q ss_pred CCeEEEEEcCCCC--hhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCccccccc-CCC
Q 009804 152 DEVYACIVTCGGL--CPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTS-RGG 228 (525)
Q Consensus 152 ~~~~iaIvtsGG~--~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSs-R~~ 228 (525)
+..+||++...-. .|-...+++++...+.. +|. ++. +..+. ...
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~-------------------------------~~~~~~~~~ 50 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YEI-KLE-------------------------------FMAPEKEED 50 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HTC-EEE-------------------------------ECCCSSTTC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cCC-EEE-------------------------------EecCCCCCC
Confidence 3468999987655 78888888888887764 442 221 00010 111
Q ss_pred -CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CC--CCc--hhhHHHHHHhhh
Q 009804 229 -HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IP--VPL--LTWFIAMYATLA 301 (525)
Q Consensus 229 -~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~--gtD--~sG~IAl~aaLA 301 (525)
....+.++.|...++|++++.+.+.... ....+.+.+.+ ++||.+=...+++ +. .+| .+|.+|+.--+.
T Consensus 51 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~ 126 (289)
T 3brs_A 51 YLVQNELIEEAIKRKPDVILLAAADYEKT--YDAAKEIKDAG--IKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKN 126 (289)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSCTTTT--HHHHTTTGGGT--CEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHHCC--CcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHH
Confidence 2245678888889999999998765431 11223333445 5566554433331 22 234 778888776655
Q ss_pred c-C-CccEEEcC
Q 009804 302 S-R-DVDCCLIP 311 (525)
Q Consensus 302 s-~-~ad~iLIP 311 (525)
. + .-.++++-
T Consensus 127 ~~G~~~~i~~i~ 138 (289)
T 3brs_A 127 LVRKSGKIGVIS 138 (289)
T ss_dssp HTSSSCEEEEEE
T ss_pred HcCCCceEEEEE
Confidence 4 3 55666663
No 94
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=48.54 E-value=36 Score=33.42 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=42.5
Q ss_pred cccCcccccccC---CCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 215 HKRGGTVLGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 215 ~~~GGtiLGSsR---~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
...|+++..... +..++...++.+++.+.+++|+.+-+. .+..+.+.+++.|+++++++...
T Consensus 168 ~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~ 232 (392)
T 3lkb_A 168 RELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAG---PVANILKDAKRLGLKMRHLGAHY 232 (392)
T ss_dssp HHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEECGG
T ss_pred HHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCceEEEecC
Confidence 345665554332 235677888899999999998877443 34456677788899988887643
No 95
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=48.38 E-value=19 Score=37.27 Aligned_cols=58 Identities=9% Similarity=0.124 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHH---------H-c---CCceeEEEeeccccCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVR---------R-R---GLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~---------~-~---g~~i~VIgIPKTIDNDI~ 286 (525)
+..+++++.+++.++|.+|-|||--.++.|..++-... . . .-.+++|.||-|--.|-.
T Consensus 88 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSe 158 (407)
T 1vlj_A 88 SKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTE 158 (407)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcchh
Confidence 45789999999999999999999999999998876431 0 0 123679999999654433
No 96
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=48.36 E-value=35 Score=31.98 Aligned_cols=117 Identities=11% Similarity=0.165 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
+..+||+++.. ..|-...++.++...+.. +|. ++. +..+... ..
T Consensus 7 ~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~ 51 (288)
T 2qu7_A 7 RSNIIAFIVPD-QNPFFTEVLTEISHECQK-HHL-HVA--------------------------------VASSEENEDK 51 (288)
T ss_dssp CEEEEEEEESS-CCHHHHHHHHHHHHHHGG-GTC-EEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEECC-CCchHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCHHH
Confidence 34589999987 778778888888777753 442 221 1011111 22
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~a 305 (525)
..++++.|...++|++++.+.+.+.. .+ +.+ .+ ++||.+-..+++ ++. .+| .+|++|+.--+..|.-
T Consensus 52 ~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l--~~--iPvV~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~G~~ 123 (288)
T 2qu7_A 52 QQDLIETFVSQNVSAIILVPVKSKFQ---MK-REW--LK--IPIMTLDRELESTSLPSITVDNEEAAYIATKRVLESTCK 123 (288)
T ss_dssp HHHHHHHHHHTTEEEEEECCSSSCCC---CC-GGG--GG--SCEEEESCCCSSCCCCEEEECHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCccEEEEecCCCChH---HH-HHh--cC--CCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC
Confidence 45678888889999999998876421 11 112 24 556765444433 122 133 7788887665555555
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
.++++-
T Consensus 124 ~I~~i~ 129 (288)
T 2qu7_A 124 EVGLLL 129 (288)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 666663
No 97
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=48.27 E-value=61 Score=31.46 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhcc---------------CCeEeCChhhhhccccc
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYA---------------KNTIALTPKGVNDIHKR 217 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~---------------~~~i~Lt~~~v~~i~~~ 217 (525)
..+-++|.++|+-+- . .+.+++.. .-++++-.|..=|++ +++=.++++..+.+...
T Consensus 20 ~~~~~lIv~ng~~~~---~----~~~~~~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~~ 90 (247)
T 3s4y_A 20 NLKYCLVILNQPLDN---Y----FRHLWNKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATK 90 (247)
T ss_dssp CCCEEEEECSSCCCT---T----HHHHHHHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHHT
T ss_pred CCCEEEEEECCcchH---H----HHHHHhhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHhc
Confidence 345556666888772 3 33344433 357899999776665 22334555666666666
Q ss_pred CcccccccCCC--CcHHHHHHHHHHc------CCCEEEEEcCCcc
Q 009804 218 GGTVLGTSRGG--HDTSKIVDSIQDR------GINQVYIIGGDGT 254 (525)
Q Consensus 218 GGtiLGSsR~~--~d~~~iv~~l~~~------~Id~L~vIGGdgS 254 (525)
|-.++-.. .+ -|++++++.+.++ +.+-++++|+-|.
T Consensus 91 ~~~i~~~p-eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 91 GCELISTP-DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp TCEEEECC-CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred CCEEEECC-CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 65555332 22 3688888887665 7899999999876
No 98
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=47.99 E-value=27 Score=32.70 Aligned_cols=125 Identities=6% Similarity=-0.077 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCC-ChhhHHHHHHHHHHHHHHhc-CCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC-C
Q 009804 152 DEVYACIVTCGG-LCPGLNTVIREIVYSLYYMY-GVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG-G 228 (525)
Q Consensus 152 ~~~~iaIvtsGG-~~PGlN~vIr~lv~~l~~~~-g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~-~ 228 (525)
+..+|||+...- .-|=...++.++...+.. + | ..+.-.. ...... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~~g-~~~~~~~-----------------------------~~~~~~~~ 55 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTT-YSD-FNISANI-----------------------------THYDPYDY 55 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHH-TGG-GCEEEEE-----------------------------EEECSSCH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHH-HHh-CCeEEEE-----------------------------EcCCCCCH
Confidence 456899998776 788888899999888765 3 2 1111000 000111 1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--CC--CCc--hhhHHHHHHhhhc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--IP--VPL--LTWFIAMYATLAS 302 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I~--gtD--~sG~IAl~aaLAs 302 (525)
....+.++.|...++|++++.+-+.... ..+.+.+.+.++ +||.+-..++++ +. ++| .+|++|+..-+..
T Consensus 56 ~~~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~ 131 (304)
T 3gbv_A 56 NSFVATSQAVIEEQPDGVMFAPTVPQYT--KGFTDALNELGI--PYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLL 131 (304)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSGGGT--HHHHHHHHHHTC--CEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCChHHH--HHHHHHHHHCCC--eEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHH
Confidence 2345678888899999999998876421 112234445575 466544433332 21 234 7899888766666
Q ss_pred CC--ccEEEcC
Q 009804 303 RD--VDCCLIP 311 (525)
Q Consensus 303 ~~--ad~iLIP 311 (525)
++ -.++++-
T Consensus 132 g~~~~~i~~i~ 142 (304)
T 3gbv_A 132 AVNDREIVIFR 142 (304)
T ss_dssp STTCSEEEEEE
T ss_pred hCCCCeEEEEE
Confidence 55 6676663
No 99
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=46.52 E-value=1.7e+02 Score=26.86 Aligned_cols=120 Identities=11% Similarity=-0.007 Sum_probs=68.1
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
.+||++...-.-|-...+++++-..+.. +|. +++- .++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g~-~~~~--------------------------------~~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LGY-NLVV--------------------------------LDSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HTC-EEEE--------------------------------EECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cCc-EEEE--------------------------------eCCCCCHHHHH
Confidence 4788888766678788888888887764 452 2221 011111 1234
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-C-C--CCCc--hhhHHHHHHhhhc--CC
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-D-I--PVPL--LTWFIAMYATLAS--RD 304 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-D-I--~gtD--~sG~IAl~aaLAs--~~ 304 (525)
+.++.+...++|++++.+.+.... ....+.+.+.++ +||.+=..+++ + . -++| .+|+.|+.--+.. ++
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~i--PvV~i~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~ 123 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQANI--PVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEG 123 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTTC--CEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCCC--cEEEecCCCCCCceeEEEecChHHHHHHHHHHHHHHcCCC
Confidence 567778888999999987654321 112244455565 45544222222 1 1 1234 7788887655444 23
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-.+++|.
T Consensus 124 ~~I~~i~ 130 (271)
T 2dri_A 124 AKVIELQ 130 (271)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 5677774
No 100
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=46.23 E-value=2e+02 Score=29.05 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=64.6
Q ss_pred cCCCeEEEEEcCCCCh-hhHHHHHHHHHHHHHHhcCC-eEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC
Q 009804 150 ESDEVYACIVTCGGLC-PGLNTVIREIVYSLYYMYGV-KRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG 227 (525)
Q Consensus 150 ~~~~~~iaIvtsGG~~-PGlN~vIr~lv~~l~~~~g~-~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~ 227 (525)
..+..+||+|+.|+.. -+-|..+..-+..+.+.+|. .++. ++-+...
T Consensus 23 ~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~-------------------------------~~e~~~~ 71 (356)
T 3s99_A 23 AEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETT-------------------------------FLENVAE 71 (356)
T ss_dssp ---CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEE-------------------------------EECSCCT
T ss_pred cCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEE-------------------------------EEecCCC
Confidence 3567899999988764 36777544444444344541 0110 1112122
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCCC--Cc--hhhHHHHH-Hhhh
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIPV--PL--LTWFIAMY-ATLA 301 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~g--tD--~sG~IAl~-aaLA 301 (525)
..+.++.++.|.+.+.|.+|.. |..-.....++++ ++ -+++++.|=..++. ++.. .| .++|||-+ |++.
T Consensus 72 ~~d~~~~l~~l~~~g~d~Ii~~-g~~~~~~~~~vA~---~~-Pdv~fv~id~~~~~~Nv~sv~~~~~eg~ylaG~~A~~~ 146 (356)
T 3s99_A 72 GADAERSIKRIARAGNKLIFTT-SFGYMDPTVKVAK---KF-PDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAKM 146 (356)
T ss_dssp THHHHHHHHHHHHTTCSEEEEC-SGGGHHHHHHHHT---TC-TTSEEEEESCCCCBTTEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEC-CHHHHHHHHHHHH---HC-CCCEEEEEeccccCCcEEEEEechhHHHHHHHHHHHHh
Confidence 2467889999999999966655 4444444444433 22 24566655322211 1111 11 78888864 3455
Q ss_pred cCCccEEEcC
Q 009804 302 SRDVDCCLIP 311 (525)
Q Consensus 302 s~~ad~iLIP 311 (525)
+..-.+-+|-
T Consensus 147 tk~~kIGfVg 156 (356)
T 3s99_A 147 SKKGIAGYIG 156 (356)
T ss_dssp CSSCEEEEEE
T ss_pred cCCCEEEEEC
Confidence 4322344553
No 101
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=46.13 E-value=25 Score=36.30 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHcC---CCEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEEEeeccccCCCCCC
Q 009804 229 HDTSKIVDSIQDRG---INQVYIIGGDGTQKGASVIYEEVRRR-------------GLKVVVAGIPKTIDNDIPVP 288 (525)
Q Consensus 229 ~d~~~iv~~l~~~~---Id~L~vIGGdgS~~~A~~L~e~~~~~-------------g~~i~VIgIPKTIDNDI~gt 288 (525)
+..+++++.+++.+ .|.++-|||--+++.|..++-..... +-.+++|.||-|--.|-..|
T Consensus 93 ~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtgSevt 168 (375)
T 3rf7_A 93 VQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTGAEAS 168 (375)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSCTTTC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccchhhC
Confidence 35788999999998 99999999999999999887653110 01367999998865554433
No 102
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=45.36 E-value=20 Score=33.55 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=60.4
Q ss_pred eEEEEEcCC-CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 154 VYACIVTCG-GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 154 ~~iaIvtsG-G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
.+|+|++.| -|-| +.+.+...|.. +|+. .++. +.+--|..+...
T Consensus 13 ~~V~IimGS~SD~~----v~~~a~~~L~~-~Gi~-----------------~ev~-------------V~SaHR~p~~~~ 57 (174)
T 3kuu_A 13 VKIAIVMGSKSDWA----TMQFAADVLTT-LNVP-----------------FHVE-------------VVSAHRTPDRLF 57 (174)
T ss_dssp CCEEEEESSGGGHH----HHHHHHHHHHH-TTCC-----------------EEEE-------------ECCTTTCHHHHH
T ss_pred CcEEEEECcHHHHH----HHHHHHHHHHH-cCCC-----------------EEEE-------------EEcccCCHHHHH
Confidence 468888732 3577 67777777754 6642 1110 445557777788
Q ss_pred HHHHHHHHcCCCEEEEEcC-CcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhh
Q 009804 233 KIVDSIQDRGINQVYIIGG-DGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLA 301 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGG-dgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLA 301 (525)
+++++.++.+++.+|.+-| .+.+-+.. +- ....+|||||-. ..++. |+=++.+.+.
T Consensus 58 ~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~-~~~l~-----G~dsLlS~vq 114 (174)
T 3kuu_A 58 SFAEQAEANGLHVIIAGNGGAAHLPGML--AA-----KTLVPVLGVPVQ-SAALS-----GVDSLYSIVQ 114 (174)
T ss_dssp HHHHHTTTTTCSEEEEEEESSCCHHHHH--HH-----TCSSCEEEEEEC-CTTTT-----THHHHHHHHT
T ss_pred HHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----ccCCCEEEeeCC-CCCCC-----CHHHHHHhhh
Confidence 8888888899997766644 44444432 22 346789999954 23444 4444444443
No 103
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=45.18 E-value=1.8e+02 Score=27.75 Aligned_cols=122 Identities=11% Similarity=-0.103 Sum_probs=68.7
Q ss_pred CCeEEEEEcCC-CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC--CC
Q 009804 152 DEVYACIVTCG-GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR--GG 228 (525)
Q Consensus 152 ~~~~iaIvtsG-G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR--~~ 228 (525)
+..+||++... -.-|-...++.++...+.. +|. ++.- . +..+. ..
T Consensus 42 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------~-----------------~~~~~~~~~ 89 (342)
T 1jx6_A 42 RPIKISVVYPGQQVSDYWVRNIASFEKRLYK-LNI-NYQL-------------N-----------------QVFTRPNAD 89 (342)
T ss_dssp SCEEEEEEECCCSSCCHHHHHHHHHHHHHHH-TTC-CEEE-------------E-----------------EEECCTTCC
T ss_pred CceEEEEEecCCcccHHHHHHHHHHHHHHHH-cCC-eEEE-------------E-----------------ecCCCCccC
Confidence 44689999876 5678788888888887764 442 1110 0 00111 11
Q ss_pred -CcHHHHHHHHHHcCCCEEEEEcCCcch-HHHHHHHHHHHHcCCceeEEEe-eccc-----cC--CC--CCCc--hhhHH
Q 009804 229 -HDTSKIVDSIQDRGINQVYIIGGDGTQ-KGASVIYEEVRRRGLKVVVAGI-PKTI-----DN--DI--PVPL--LTWFI 294 (525)
Q Consensus 229 -~d~~~iv~~l~~~~Id~L~vIGGdgS~-~~A~~L~e~~~~~g~~i~VIgI-PKTI-----DN--DI--~gtD--~sG~I 294 (525)
....+.++.+...++|++++ .++... .. ..+.+.+.+++ +|.+ -..+ +. ++ -++| .+|..
T Consensus 90 ~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~~---~~~~~~~~~ip--~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~ 163 (342)
T 1jx6_A 90 IKQQSLSLMEALKSKSDYLIF-TLDTTRHRK---FVEHVLDSTNT--KLILQNITTPVREWDKHQPFLYVGFDHAEGSRE 163 (342)
T ss_dssp HHHHHHHHHHHHHTTCSEEEE-CCSSSTTHH---HHHHHHHHCSC--EEEEETCCSCBGGGTTSCCSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEE-eCChHhHHH---HHHHHHHcCCC--EEEEecCCCcccccccCCCceEEecCcHHHHHH
Confidence 22346778888899999999 555432 22 22334455754 4433 1111 11 11 2345 77888
Q ss_pred HHHHhhhc-C-CccEEEcC
Q 009804 295 AMYATLAS-R-DVDCCLIP 311 (525)
Q Consensus 295 Al~aaLAs-~-~ad~iLIP 311 (525)
|+.--+.. + +-.+++|-
T Consensus 164 a~~~L~~~~Gg~~~I~~i~ 182 (342)
T 1jx6_A 164 LATEFGKFFPKHTYYSVLY 182 (342)
T ss_dssp HHHHHHHHSCTTCEEEEEC
T ss_pred HHHHHHHHcCCCceEEEEE
Confidence 87766664 4 66777774
No 104
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=44.04 E-value=26 Score=35.41 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.++++++ |.++-+||--.++.|..++-.. .+| +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~rg--ip~i~IPTTl 121 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FRG--IDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-ccC--CCEEEeCCch
Confidence 457899999999999 9999999999999888777432 345 6799999995
No 105
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=43.80 E-value=24 Score=36.34 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHcC--C---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRG--I---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~--I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+.+.+ + |.++-+||--.++.|..++-.+ .+| +++|.||-|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 45789999999999 9 9999999998888888777533 457 5799999985
No 106
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=43.60 E-value=1.9e+02 Score=26.23 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=67.6
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
.+||++...-.-|-.+.++.++-+.+.. +|. ++. +..+... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 48 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYE-QGY-DPI--------------------------------MMESQFSPQLVA 48 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-HTC-EEE--------------------------------EEECTTCHHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCcHHHHH
Confidence 4788988766677788888888887764 452 221 1111111 2235
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCC-----Cc--hhhHHHHHHhhhcCCc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV-----PL--LTWFIAMYATLASRDV 305 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~g-----tD--~sG~IAl~aaLAs~~a 305 (525)
+.++.+...++|++++.+.+... .. .+++.++ +||.+ |++.+. +| .+|++|+.--+..|+-
T Consensus 49 ~~~~~l~~~~vdgiI~~~~~~~~--~~----~l~~~~~--pvV~~----~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~ 116 (255)
T 1byk_A 49 EHLGVLKRRNIDGVVLFGFTGIT--EE----MLAHWQS--SLVLL----ARDAKGFASVCYDDEGAIKILMQRLYDQGHR 116 (255)
T ss_dssp HHHHHHHTTTCCEEEEECCTTCC--TT----TSGGGSS--SEEEE----SSCCSSCEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCEEEEecCcccc--HH----HHHhcCC--CEEEE----ccccCCCCEEEEccHHHHHHHHHHHHHcCCC
Confidence 67788888999999999865422 11 1223454 45544 333222 23 7788887766666666
Q ss_pred cEEEcC
Q 009804 306 DCCLIP 311 (525)
Q Consensus 306 d~iLIP 311 (525)
.+.++-
T Consensus 117 ~I~~i~ 122 (255)
T 1byk_A 117 NISYLG 122 (255)
T ss_dssp CEEEEC
T ss_pred eEEEEe
Confidence 777764
No 107
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=43.23 E-value=23 Score=35.79 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.++++++ |.++-+||--.++.|..++-.. +++ +++|.||-|.
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~rg--ip~i~IPTT~ 126 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LRG--VHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECST
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-ccC--CCEEEECCcc
Confidence 457899999999999 9999999999999988887532 345 6799999997
No 108
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=42.87 E-value=2e+02 Score=27.48 Aligned_cols=117 Identities=10% Similarity=0.019 Sum_probs=68.2
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-Cc
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HD 230 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d 230 (525)
...+||++...-.-|-...++.++...+.. +|. ++. +..+... ..
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~ 104 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKN-KGY-TLF--------------------------------LCNTDDDKEK 104 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHH
Confidence 345899998765567777788888777754 442 221 0011111 22
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCcc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad 306 (525)
..+.++.|...++|+++ .+.+.+. +.+.+.+ ++||.+-...++++. .+| .+|++|+.--+..|+-.
T Consensus 105 ~~~~~~~l~~~~vdgiI-~~~~~~~-------~~l~~~~--iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~ 174 (330)
T 3ctp_A 105 EKTYLEVLQSHRVAGII-ASRSQCE-------DEYANID--IPVVAFENHILDNIITISSDNYNGGRMAFDHLYEKGCRK 174 (330)
T ss_dssp HHHHHHHHHHTTCSEEE-EETCCCS-------GGGTTCC--SCEEEESSCCCTTSCEEEECHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCCCCEEE-ECCCCCH-------HHHHhcC--CCEEEEeccCCCCCCEEEeCHHHHHHHHHHHHHHCCCCe
Confidence 45677888889999999 8876543 1223345 456655333322222 233 77888876655555667
Q ss_pred EEEcCC
Q 009804 307 CCLIPE 312 (525)
Q Consensus 307 ~iLIPE 312 (525)
+.+|-.
T Consensus 175 I~~i~~ 180 (330)
T 3ctp_A 175 ILHIKG 180 (330)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 777643
No 109
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=41.01 E-value=2.6e+02 Score=27.44 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCCEE--EEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 231 TSKIVDSIQDRGINQV--YIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L--~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+++..+.|++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|=
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPf 57 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPF 57 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4555666666554444 667778777777777777777777776777775
No 110
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=40.86 E-value=42 Score=30.10 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHH-cCCCEEEEEcCCcchHHHHHHHHHHHHc-CCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQD-RGINQVYIIGGDGTQKGASVIYEEVRRR-GLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~-~~Id~L~vIGGdgS~~~A~~L~e~~~~~-g~~i~VIgIPKTI 281 (525)
-|..-+++.++- ..+|.++++-||+-+.-+. +.++++ |.++-++|.|+..
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGS
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcC
Confidence 466555555532 5799999999999988755 445564 9999999988743
No 111
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=40.69 E-value=45 Score=32.69 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe-eccc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI-PKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI-PKTI 281 (525)
+.+.++++.|++.|++.+++-.---+. ....|.+ .++++|||| +.|.
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~-----~~~iPvigiiea~~ 133 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQN-----VAKARMISILDATL 133 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHH-----HCSSEEECHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHH-----HCCCCEEcccHHHH
Confidence 457788999999999977665543333 3333332 356889996 4443
No 112
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=40.34 E-value=3.4e+02 Score=28.69 Aligned_cols=139 Identities=13% Similarity=0.035 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCEEEEEc-------CCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhh--
Q 009804 231 TSKIVDSIQDRGINQVYIIG-------GDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLA-- 301 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIG-------GdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLA-- 301 (525)
.+.|.+..++++-+.++|++ |||--.-+..+.+ +.+ ++||.+.. +...++.+.||-++..+|.
T Consensus 77 ~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~---~~g--~pVi~v~t---pgf~g~~~~G~d~a~~~lv~~ 148 (511)
T 2xdq_B 77 VDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQNFVRRASL---STT--ADVLLADV---NHYRVNELQAADRTLEQIVQF 148 (511)
T ss_dssp HHHHHHHHHHHCCSEEEEECCHHHHTTCCCHHHHHHHHHH---HCS--SEEEECCC---CTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhhh---ccC--CCEEEeeC---CCcccchhHHHHHHHHHHHHH
Confidence 34555566788999988887 5665555554433 234 56666654 4555555677776665653
Q ss_pred ---------------cCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEE-EEecCCCCcchhHHhhhhccccccCC
Q 009804 302 ---------------SRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVI-VIAEGAGQDLLAESIRSATQQDASGN 365 (525)
Q Consensus 302 ---------------s~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VI-VVAEGa~~~~~~~~~~~~~~~DasGn 365 (525)
.....+-||.+.+.....+.+ +..|++-+++-|.-++ +...|..-+-+. ...++.-|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~gD-~~eik~lL~~~Gi~v~~~~~gg~~~~ei~------~~~~A~~n 221 (511)
T 2xdq_B 149 YIDKARRQGTLGTSKTPTPSVNIIGITTLGFHNQHD-CRELKQLMADLGIQVNLVIPAAATVHDLQ------RLPQAWFN 221 (511)
T ss_dssp HHHHHHHHTCCCCSCCSSCEEEEEEECTTCTTHHHH-HHHHHHHHHHHTCEEEEEEETTCCTTTGG------GGGGSSEE
T ss_pred HhhccccccccccccCCCCceEEEeccCCCCCCccH-HHHHHHHHHHCCCeEEEEECCcCcHHHHH------hhccCCEE
Confidence 112347788777654332334 3667877877677666 677765432121 11345555
Q ss_pred ccch-hHHHHHHHHHHHHhC
Q 009804 366 KLLQ-DVGLWLSQKIKDHFA 384 (525)
Q Consensus 366 ~~L~-dig~~La~~Ik~~~~ 384 (525)
..+. ..+..+++.++++++
T Consensus 222 iv~~~~~~~~~A~~Le~~~G 241 (511)
T 2xdq_B 222 LVPYREIGGLTAQYLEREFG 241 (511)
T ss_dssp ECCCTTSSHHHHHHHHHHHC
T ss_pred EEEchhhhHHHHHHHHHHhC
Confidence 5554 346788888888886
No 113
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=39.65 E-value=2.6e+02 Score=27.42 Aligned_cols=70 Identities=9% Similarity=0.095 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEcCC
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPE 312 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLIPE 312 (525)
.+++..++.+.+.++..||-.++.+.. ++-.+++.|+++ +|.+|.+. +..+.+.+.-++ +++++++|.
T Consensus 60 ~~i~~a~~~G~~~vv~~G~ssGN~g~a-lA~~a~~~G~~~-~iv~p~~~-------~~~~k~~~~~~~---GA~v~~~~~ 127 (325)
T 1j0a_A 60 YLLGDALSKGADVVITVGAVHSNHAFV-TGLAAKKLGLDA-ILVLRGKE-------ELKGNYLLDKIM---GIETRVYDA 127 (325)
T ss_dssp HHHHHHHHTTCSEEEEECCTTCHHHHH-HHHHHHHTTCEE-EEEEESCC-------CSCHHHHHHHHT---TCEEEEESC
T ss_pred HHHHHHHHcCCCEEEEcCCcchHHHHH-HHHHHHHhCCcE-EEEECCCC-------CCCchHHHHHHC---CCEEEEeCc
Confidence 345666678889999988666665533 666778889985 56689877 123556555443 688999886
Q ss_pred CC
Q 009804 313 SP 314 (525)
Q Consensus 313 ~p 314 (525)
..
T Consensus 128 ~~ 129 (325)
T 1j0a_A 128 KD 129 (325)
T ss_dssp CS
T ss_pred ch
Confidence 54
No 114
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=39.49 E-value=1.9e+02 Score=27.93 Aligned_cols=120 Identities=11% Similarity=0.039 Sum_probs=67.2
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccC-CC-Cc
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSR-GG-HD 230 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR-~~-~d 230 (525)
..+||++...-.-|-...++.++...+.. +|. ++. +..+. .. +.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 106 (349)
T 1jye_A 61 SLLIGVATSSLALHAPSQIVAAILSRADQ-LGA-SVV--------------------------------VSMVERSGVEA 106 (349)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECCSSSHHH
T ss_pred CCEEEEEeCCCCcccHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCcHHH
Confidence 35899998655556667788888777754 442 221 10111 11 12
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCC--CCc--hhhHHHHHHhhhcCCcc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP--VPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~--gtD--~sG~IAl~aaLAs~~ad 306 (525)
..+.++.|...++|++++.+...... .+...+.+.++ +||.+=...+.++. .+| .+|++|+.--+..|+-.
T Consensus 107 ~~~~l~~l~~~~vdGiIi~~~~~~~~---~~~~~~~~~~i--PvV~i~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~ 181 (349)
T 1jye_A 107 CKTAVHNLLAQRVSGLIINYPLDDQD---AIAVEAACTNV--PALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQ 181 (349)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCHHH---HHHHHHHTTTS--CEEESSSCTTSSSCEEEECHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHCCCCEEEEecCCCChh---HHHHHHhhCCC--CEEEEcccCCCCCCEEEEchHHHHHHHHHHHHHCCCCE
Confidence 34567788889999999987543322 12233333454 56654322222222 233 67888876555555667
Q ss_pred EEEcC
Q 009804 307 CCLIP 311 (525)
Q Consensus 307 ~iLIP 311 (525)
+.+|-
T Consensus 182 I~~i~ 186 (349)
T 1jye_A 182 IALLA 186 (349)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77764
No 115
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=39.43 E-value=26 Score=35.14 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=60.9
Q ss_pred ccCC--CCcHHHHHHHHHHcCCCEEEEEcCCcc------------hHHHHHHHHHHHHc-C--CceeEEEeeccccCCCC
Q 009804 224 TSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT------------QKGASVIYEEVRRR-G--LKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 224 SsR~--~~d~~~iv~~l~~~~Id~L~vIGGdgS------------~~~A~~L~e~~~~~-g--~~i~VIgIPKTIDNDI~ 286 (525)
|||. ..+++..+..+++.||+.++++.||-. +..|..|.+.+++. | +.|.|.+-|-.=- +..
T Consensus 79 tc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp-~~~ 157 (310)
T 3apt_A 79 TVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHP-ESE 157 (310)
T ss_dssp ECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCT-TSS
T ss_pred ecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCC-CCC
Confidence 4444 356888899999999999999999932 44688888887776 5 6777777773110 000
Q ss_pred CCchhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc
Q 009804 287 VPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE 333 (525)
Q Consensus 287 gtD~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~ 333 (525)
-. ..-.-.+..=+.. +||+++.- .-|+.+ .+++.++ +.++
T Consensus 158 ~~-~~d~~~Lk~Kv~a-GAdf~iTQ-~ffD~~---~~~~f~~-~~r~ 197 (310)
T 3apt_A 158 SL-EADLRHFKAKVEA-GLDFAITQ-LFFNNA---HYFGFLE-RARR 197 (310)
T ss_dssp CH-HHHHHHHHHHHHH-HCSEEEEC-CCSCHH---HHHHHHH-HHHH
T ss_pred CH-HHHHHHHHHHHHc-CCCEEEec-ccCCHH---HHHHHHH-HHHH
Confidence 00 0111223334444 58877654 346665 4555544 3443
No 116
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=39.37 E-value=66 Score=27.37 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=44.5
Q ss_pred EEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEc-CCCCCCccchhhHH
Q 009804 246 VYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLI-PESPFYLEGHGGLF 324 (525)
Q Consensus 246 L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLI-PE~pf~leg~~~ll 324 (525)
|+|-+|-.|---+.++-++++++|+++.+...|-.--.+. .. +.|++|+ |-+.|. +
T Consensus 11 L~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~---------------~~-~~DvvLLgPQV~y~-------~ 67 (108)
T 3nbm_A 11 VLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI---------------MG-VYDLIILAPQVRSY-------Y 67 (108)
T ss_dssp EEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTT---------------GG-GCSEEEECGGGGGG-------H
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhh---------------cc-CCCEEEEChHHHHH-------H
Confidence 4455554444457788888888999988877665432221 12 5888776 555553 3
Q ss_pred HHHHHHHHcCCcEEEEE
Q 009804 325 EYIETRLKENGHMVIVI 341 (525)
Q Consensus 325 e~I~~rl~~~g~~VIVV 341 (525)
+.+++..++.+--|.++
T Consensus 68 ~~ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 68 REMKVDAERLGIQIVAT 84 (108)
T ss_dssp HHHHHHHTTTTCEEEEC
T ss_pred HHHHHHhhhcCCcEEEe
Confidence 55666665555545443
No 117
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=39.00 E-value=29 Score=34.93 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCcc------hHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCc-hhhHHHHHHh
Q 009804 228 GHDTSKIVDSIQDRGINQVYIIGGDGT------QKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPL-LTWFIAMYAT 299 (525)
Q Consensus 228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS------~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD-~sG~IAl~aa 299 (525)
..+++..+..+++.||+-++++.||-. +..|..|.+.+++. ++.|.|.+-|- .+-...+ ..=.-.+..=
T Consensus 96 ~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yPE---~Hp~a~~~~~d~~~Lk~K 172 (304)
T 3fst_A 96 PDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPE---VHPEAKSAQADLLNLKRK 172 (304)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECTT---CCTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC---cCCCCCCHHHHHHHHHHH
Confidence 356888899999999999999999843 44477788877654 57777777773 1111111 1112223334
Q ss_pred hhcCCccEEEcCCCCCCccchhhHHHHHH
Q 009804 300 LASRDVDCCLIPESPFYLEGHGGLFEYIE 328 (525)
Q Consensus 300 LAs~~ad~iLIPE~pf~leg~~~lle~I~ 328 (525)
+.+ +||+++.- .-|+.+ .++++++
T Consensus 173 vdA-GAdf~iTQ-~ffD~~---~~~~f~~ 196 (304)
T 3fst_A 173 VDA-GANRAITQ-FFFDVE---SYLRFRD 196 (304)
T ss_dssp HHH-TCCEEEEC-CCSCHH---HHHHHHH
T ss_pred HHc-CCCEEEeC-ccCCHH---HHHHHHH
Confidence 444 68886643 336655 4555444
No 118
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=38.51 E-value=2.6e+02 Score=26.31 Aligned_cols=64 Identities=8% Similarity=0.044 Sum_probs=46.2
Q ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCc---------chHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 226 RGGHDTSKIVDSIQDRGINQVYIIGGDG---------TQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 226 R~~~d~~~iv~~l~~~~Id~L~vIGGdg---------S~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
|...++.+.++.+++.|++++=+...+. +...+..+.+.++++|+.+..++.|..-..++...|
T Consensus 27 ~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~d 99 (295)
T 3cqj_A 27 PAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSED 99 (295)
T ss_dssp CCCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGGGGTSCTTCSS
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCcccCCCCCCCC
Confidence 3345799999999999999998876543 345567788888889998877777654333444444
No 119
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=38.27 E-value=29 Score=32.72 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=40.1
Q ss_pred cccccCCCCcHHHHHHHHHHcCCCEEEEE-cCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 221 VLGTSRGGHDTSKIVDSIQDRGINQVYII-GGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 221 iLGSsR~~~d~~~iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
+.+--|..+.+.+++++.++.+++.+|.+ |+.+.+-+... - ....+|||||-... .+.|.|
T Consensus 47 V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~~-~l~G~d 108 (183)
T 1o4v_A 47 IVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVA--S-----ITHLPVIGVPVKTS-TLNGLD 108 (183)
T ss_dssp ECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHH--H-----HCSSCEEEEEECCT-TTTTHH
T ss_pred EEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHH--h-----ccCCCEEEeeCCCC-CCCcHH
Confidence 45556777778888888888999976665 44555554432 2 24578999997664 344433
No 120
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=38.00 E-value=30 Score=32.08 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=57.3
Q ss_pred CeEEEEEcCC-CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 153 EVYACIVTCG-GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 153 ~~~iaIvtsG-G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
..+|+|++.| -|-| +...+...|.. +|+. .++ .+.+--|..+..
T Consensus 3 ~~~V~Iimgs~SD~~----v~~~a~~~l~~-~gi~-----------------~ev-------------~V~SaHR~p~~~ 47 (163)
T 3ors_A 3 AMKVAVIMGSSSDWK----IMQESCNMLDY-FEIP-----------------YEK-------------QVVSAHRTPKMM 47 (163)
T ss_dssp CCCEEEEESCGGGHH----HHHHHHHHHHH-TTCC-----------------EEE-------------EECCTTTSHHHH
T ss_pred CCeEEEEECcHHHHH----HHHHHHHHHHH-cCCC-----------------EEE-------------EEECCcCCHHHH
Confidence 3467777632 3577 66777777753 6642 111 145556777778
Q ss_pred HHHHHHHHHcCCCEEEEEc-CCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 232 SKIVDSIQDRGINQVYIIG-GDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIG-GdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
.+++++.++.+++.+|.+- +.+.+-+.. +- ....+|||||-... ++.|.|
T Consensus 48 ~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~G~d 98 (163)
T 3ors_A 48 VQFASEARERGINIIIAGAGGAAHLPGMV--AS-----LTTLPVIGVPIETK-SLKGID 98 (163)
T ss_dssp HHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCT-TTTTHH
T ss_pred HHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCCC-CCCCHH
Confidence 8888888889999776664 444444433 22 23578999996543 444333
No 121
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=37.97 E-value=39 Score=34.82 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+.+.++ |.++-+||--.++.|..++..+ .+| +++|.||-|.
T Consensus 87 ~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 139 (368)
T 3qbe_A 87 PVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LRG--VSIVHLPTTL 139 (368)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-ccC--CcEEEECCCC
Confidence 347889999999875 9999999999999988887543 456 5789999995
No 122
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=37.71 E-value=18 Score=36.88 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
+..+++++.+++ +.|.++-|||-=.++.|..++-. ++ +++|.||-|
T Consensus 82 ~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTT 127 (376)
T 1kq3_A 82 EEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---LK--KPVVIVPTI 127 (376)
T ss_dssp HHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS
T ss_pred HHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCc
Confidence 356777777888 99999999999999999988832 45 679999998
No 123
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=37.26 E-value=97 Score=29.90 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=40.6
Q ss_pred cccCccccccc--CCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 215 HKRGGTVLGTS--RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 215 ~~~GGtiLGSs--R~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
...|+++.... .+..++...++.+++.+.+++|+.+-+. .+..+.+.+++.|+++++++...
T Consensus 175 ~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~ 238 (366)
T 3td9_A 175 TELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYP---EIALISRQARQLGFTGYILAGDG 238 (366)
T ss_dssp HHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHH---HHHHHHHHHHHTTCCSEEEECGG
T ss_pred HHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchh---HHHHHHHHHHHcCCCceEEeeCC
Confidence 34455444332 2235677788889999999998865443 33445577788899988887543
No 124
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=36.91 E-value=1.8e+02 Score=27.09 Aligned_cols=121 Identities=10% Similarity=0.067 Sum_probs=69.6
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccc--cCCC-Cc
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGT--SRGG-HD 230 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGS--sR~~-~d 230 (525)
.+||++...-.-|-...++.++...+.. +|. +++ +.+ +... ..
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 47 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKT-LGV-SVD--------------------------------IFASPSEGDFQS 47 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECSSTTCHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EeCCCCCCCHHH
Confidence 4688888766677778888888877764 442 221 111 1111 22
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC--------CC---CCCc--hhhHHHHH
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN--------DI---PVPL--LTWFIAMY 297 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--------DI---~gtD--~sG~IAl~ 297 (525)
..+.++.+..+++|++++.+.+..... ..+ +.+.+.++ +||.+=..++. ++ .++| .+|++|+.
T Consensus 48 ~~~~~~~~~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~i--PvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~ 123 (288)
T 1gud_A 48 QLQLFEDLSNKNYKGIAFAPLSSVNLV-MPV-ARAWKKGI--YLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGAS 123 (288)
T ss_dssp HHHHHHHHHTSSEEEEEECCSSSSTTH-HHH-HHHHHTTC--EEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHHH-HHH-HHHHHCCC--eEEEECCCCCcccccccCCceeEEECCChHHHHHHHHH
Confidence 345677888899999999887643211 112 33444564 56654332321 12 2345 77888876
Q ss_pred Hhhhc-C--CccEEEcCC
Q 009804 298 ATLAS-R--DVDCCLIPE 312 (525)
Q Consensus 298 aaLAs-~--~ad~iLIPE 312 (525)
--+.. | +-.+++|-.
T Consensus 124 ~L~~~~G~~~~~I~~i~g 141 (288)
T 1gud_A 124 FIIDKLGAEGGEVAIIEG 141 (288)
T ss_dssp HHHHHHGGGCEEEEEEEC
T ss_pred HHHHHhCCCCCEEEEEeC
Confidence 55554 4 567777743
No 125
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.91 E-value=43 Score=27.84 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=46.6
Q ss_pred cccCcccccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeE
Q 009804 215 HKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVV 274 (525)
Q Consensus 215 ~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~V 274 (525)
|+.+|..+.|.-..+|+..|++.+++.|---++.+-|- |+...+.+.++.++.|..-.|
T Consensus 24 hnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvsydv 82 (112)
T 2lnd_A 24 HNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVSYDV 82 (112)
T ss_dssp HHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcchhh
Confidence 56677778787777899999999999988877777664 677788899999888865433
No 126
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=36.61 E-value=18 Score=36.43 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVP 288 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gt 288 (525)
+..+++ +.+++.+.|.++-|||--.++.|..++ +. ++ +++|.||-|.-.|-..+
T Consensus 76 ~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgse~t 129 (354)
T 3ce9_A 76 DEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDGFSS 129 (354)
T ss_dssp HHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGGGTS
T ss_pred HHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCCCCC
Confidence 346677 777888999999999999999999888 32 45 56899999987654433
No 127
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=36.41 E-value=1.3e+02 Score=29.93 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCEEEEEcC-CcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEc
Q 009804 232 SKIVDSIQDRGINQVYIIGG-DGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGG-dgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLI 310 (525)
..++...++.+.+.|+..|| .|-+-.| ++-.+++.|+++ +|.+|.+.....+-+...+-+.+.-++ +++++++
T Consensus 70 ~~~l~~a~~~G~~~vv~~s~tsGN~g~a--lA~aa~~~G~~~-~iv~p~~~~~~~~~~~~~~k~~~~~~~---GA~V~~~ 143 (342)
T 4d9b_A 70 EFLVADALREGADTLITAGAIQSNHVRQ--TAAVAAKLGLHC-VALLENPIGTTAENYLTNGNRLLLDLF---NTQIEMC 143 (342)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHHTCEE-EEEEECTTCCCCHHHHHSHHHHHHHHT---TCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCcccHHHHH--HHHHHHHhCCcE-EEEEeCCCCCccccccccchHHHHHHC---CCEEEEE
Confidence 44456667789999999985 4443333 444466779985 667898764321100113455544443 6889998
Q ss_pred CCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCC
Q 009804 311 PESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGA 345 (525)
Q Consensus 311 PE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa 345 (525)
|.. .+.+ +..+.+.+++.+.+....++.++.
T Consensus 144 ~~~-~~~~---~~~~~~a~~l~~~~~~~~~~p~~~ 174 (342)
T 4d9b_A 144 DAL-TDPD---AQLQTLATRIEAQGFRPYVIPVGG 174 (342)
T ss_dssp SCC-SSHH---HHHHHHHHHHHHTTCCEEECCGGG
T ss_pred Cch-hhHH---HHHHHHHHHHHhcCCceEEeCCCC
Confidence 875 2222 333334444444332233445553
No 128
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=36.23 E-value=2.4e+02 Score=27.56 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCc-----chHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDG-----TQKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdg-----S~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+++.++.+.+.|+++|++.|..| |..-=.++.+...+. +-+++|| ..|-.|+.. ++=-+|-++.=+ +
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGvg~~~t~---~ai~la~~a~~~--G 96 (291)
T 3tak_A 24 LEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPII--AGTGANSTR---EAIELTKAAKDL--G 96 (291)
T ss_dssp HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EECCCSSHH---HHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEE--EeCCCCCHH---HHHHHHHHHHhc--C
Confidence 67888888899999999999888 445445555555443 2234444 466666643 444455444433 5
Q ss_pred ccEEE-cCCCCCCccchhhHHHHHHHHHHcCCcEEEE
Q 009804 305 VDCCL-IPESPFYLEGHGGLFEYIETRLKENGHMVIV 340 (525)
Q Consensus 305 ad~iL-IPE~pf~leg~~~lle~I~~rl~~~g~~VIV 340 (525)
+|.++ +|-.-+... +++++++.++..+.-+--|++
T Consensus 97 adavlv~~P~y~~~~-~~~l~~~f~~ia~a~~lPiil 132 (291)
T 3tak_A 97 ADAALLVTPYYNKPT-QEGLYQHYKAIAEAVELPLIL 132 (291)
T ss_dssp CSEEEEECCCSSCCC-HHHHHHHHHHHHHHCCSCEEE
T ss_pred CCEEEEcCCCCCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 77543 343333332 557888877666554444554
No 129
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=35.82 E-value=48 Score=31.91 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=40.2
Q ss_pred cccCcccccccC---CCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 215 HKRGGTVLGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 215 ~~~GGtiLGSsR---~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
...|+++..... +..++...++.+++.+.+++|+.+-+.. +..+.+.+++.|+++++++..
T Consensus 163 ~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~ 226 (356)
T 3ipc_A 163 NAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSGD 226 (356)
T ss_dssp HHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEECG
T ss_pred HHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEec
Confidence 344555443322 2356788888999999999887765443 334556677789988887654
No 130
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=35.16 E-value=47 Score=30.64 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHHc-C----CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 228 GHDTSKIVDSIQDR-G----INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 228 ~~d~~~iv~~l~~~-~----Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
..|+..+.+.+.++ . =|-++|=||-|=+..|..+.++ .|++++|+|+-|
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK 113 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAK 113 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEc
Confidence 36788888888876 2 4777777999999988887765 488899999988
No 131
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=35.14 E-value=1.9e+02 Score=25.48 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCceeEEEeeccccCCCCCCc---hhhHHHHHHhhhcCC--ccEEEcCCCC-CCccchhhHHHHHHHHH
Q 009804 258 ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL---LTWFIAMYATLASRD--VDCCLIPESP-FYLEGHGGLFEYIETRL 331 (525)
Q Consensus 258 A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD---~sG~IAl~aaLAs~~--ad~iLIPE~p-f~leg~~~lle~I~~rl 331 (525)
-..+.+++.++|+. ++.+= +|..+.++. .-||-.+...+..+. +|.+++.+.. +.-. ..++++.+ +.+
T Consensus 28 ~~~l~~~a~~~g~~--i~~~~--~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~-~~~~~~~~-~~l 101 (167)
T 3guv_A 28 KSRMKAFAIYNDYE--IVGEY--EDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN-AADVLSTL-QIM 101 (167)
T ss_dssp HHHHHHHHHHTTCE--EEEEE--EECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCSS-HHHHHHHH-HHH
T ss_pred HHHHHHHHHhCCCE--EEEEE--eecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcCC-HHHHHHHH-HHH
Confidence 44566777777865 33321 466677753 779999988888855 8999998753 2222 22444444 346
Q ss_pred HcCCcEEEEEecCC
Q 009804 332 KENGHMVIVIAEGA 345 (525)
Q Consensus 332 ~~~g~~VIVVAEGa 345 (525)
+++|-.|+++.|+.
T Consensus 102 ~~~gv~l~~~~~~~ 115 (167)
T 3guv_A 102 QDYGVNLICVEDGI 115 (167)
T ss_dssp HHTTCEEEETTTTE
T ss_pred HHCCCEEEEeeCCc
Confidence 77888888888874
No 132
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=34.88 E-value=21 Score=37.73 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
.++++++.+++ +.|.++-|||--.++.|..++-. ++ +++|.||-|
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~g--iP~I~IPTT 178 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---MN--LPSIICPTT 178 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEEeCC
Confidence 35666666777 89999999999999999988832 45 679999999
No 133
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.31 E-value=53 Score=25.52 Aligned_cols=51 Identities=12% Similarity=0.300 Sum_probs=39.7
Q ss_pred ccccCCCCcHHHHHHHHHHcCCC---------EEEEEcCCcchHHHHHHHHHHHHcCCce
Q 009804 222 LGTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGASVIYEEVRRRGLKV 272 (525)
Q Consensus 222 LGSsR~~~d~~~iv~~l~~~~Id---------~L~vIGGdgS~~~A~~L~e~~~~~g~~i 272 (525)
+|+-+...+-+++.+.|+..|+. +-+.+|...+...|..+.+.+++.|++.
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~ 73 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDA 73 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCce
Confidence 35555556778889999988887 4467788888899999999998888863
No 134
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=34.08 E-value=44 Score=33.77 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.++++++ |.++-+||--.++.|..++-.+ .+| +++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~rg--ip~i~IPTTl 120 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LRG--VAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcH
Confidence 457889999999998 8999999999999888887532 345 6799999985
No 135
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=33.03 E-value=48 Score=34.50 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+..+++++.+.+.++ |.++-+||--.++.|..++-.. .+| +++|.||-|.
T Consensus 107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~-~rg--ip~I~IPTTl 159 (390)
T 3okf_A 107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY-QRG--VDFIQIPTTL 159 (390)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh-cCC--CCEEEeCCCC
Confidence 457899999999999 6999999999999888776432 346 6789999995
No 136
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=32.53 E-value=20 Score=32.15 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDI 285 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI 285 (525)
+.+++++.|++.+.+-++||||-..++.+..+.+ .+.+--||..++.|.
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~ 129 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDT 129 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCE
Confidence 6889999999888899999999877777665433 356677788876554
No 137
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=32.45 E-value=3e+02 Score=25.31 Aligned_cols=111 Identities=13% Similarity=0.014 Sum_probs=64.2
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
.+|||+...-.-|-...++.++...+.. +|. ++. +-.+... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 48 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ-LGY-EAT--------------------------------IFDSQNDTAKES 48 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EeCCCCCHHHHH
Confidence 4789998766677788888888887754 442 221 0011111 2234
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-C-C---CCCc--hhhHHHHHHhhhc
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-D-I---PVPL--LTWFIAMYATLAS 302 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-D-I---~gtD--~sG~IAl~aaLAs 302 (525)
+.++.|...++|++++.+.+.+.. ....+++.+.++ +||.+-..+++ + . ..+| .+|..|+.--+..
T Consensus 49 ~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~~V~~D~~~~~~~~~~~L~~~ 121 (290)
T 2fn9_A 49 AHFDAIIAAGYDAIIFNPTDADGS--IANVKRAKEAGI--PVFCVDRGINARGLAVAQIYSDNYYGGVLAGEYFVKF 121 (290)
T ss_dssp HHHHHHHHTTCSEEEECCSCTTTT--HHHHHHHHHTTC--CEEEESSCCSCSSSSSEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHCCC--eEEEEecCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 667888889999999998765421 112244445565 56655444443 1 2 2345 6688776544443
No 138
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=32.05 E-value=46 Score=26.21 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=40.8
Q ss_pred cccCCCCcHHHHHHHHHHcCCC---------EEEEEcCCcchHHHHHHHHHHHHcCCceeE
Q 009804 223 GTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGASVIYEEVRRRGLKVVV 274 (525)
Q Consensus 223 GSsR~~~d~~~iv~~l~~~~Id---------~L~vIGGdgS~~~A~~L~e~~~~~g~~i~V 274 (525)
|+=+...+-+++.+.|+..++. +-|.+|...+...|..+.+.+++.|++..+
T Consensus 15 GaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~i 75 (81)
T 1uta_A 15 GSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCI 75 (81)
T ss_dssp CEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCB
T ss_pred EEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEE
Confidence 4555556778899999998887 457788888999999999998888876433
No 139
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=32.02 E-value=3.2e+02 Score=25.58 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC--CCC--CCc--hhhHHHHHHhhhc--
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN--DIP--VPL--LTWFIAMYATLAS-- 302 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN--DI~--gtD--~sG~IAl~aaLAs-- 302 (525)
..+.++.|...++|++++.+.+.... ....+.+.+.++ +||.+=..+++ .+. ++| .+|++|+..-+..
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~~~ 121 (313)
T 2h3h_A 46 QLQMLESFIAEGVNGIAIAPSDPTAV--IPTIKKALEMGI--PVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLG 121 (313)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHTTC--CEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCCC--eEEEeCCCCCCcceeEEECcCHHHHHHHHHHHHHHHcC
Confidence 44667888889999999988765421 112234445564 56655333322 121 234 6788887655543
Q ss_pred CCccEEEcCC
Q 009804 303 RDVDCCLIPE 312 (525)
Q Consensus 303 ~~ad~iLIPE 312 (525)
+.-.+++|-.
T Consensus 122 G~~~I~~i~~ 131 (313)
T 2h3h_A 122 GKGKVVIGTG 131 (313)
T ss_dssp SCSEEEEEES
T ss_pred CCCEEEEEEC
Confidence 5566766643
No 140
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=31.73 E-value=3.2e+02 Score=26.71 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcc-----hHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGT-----QKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS-----~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+++.++.+.+.|+++|++.|..|- ..-=.++.+...+. +-+++|| ..|-.|+.. ++=-+|-++.= . +
T Consensus 30 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGvg~~~t~---~ai~la~~a~~-~-G 102 (297)
T 3flu_A 30 LRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVI--AGTGANNTV---EAIALSQAAEK-A-G 102 (297)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EECCCSSHH---HHHHHHHHHHH-T-T
T ss_pred HHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEE--EeCCCcCHH---HHHHHHHHHHH-c-C
Confidence 678888899999999999998873 33333444444332 2234444 366666643 44444444432 2 5
Q ss_pred ccEEE-cCCCCCCccchhhHHHHHHHHHHcCCcEEEEE
Q 009804 305 VDCCL-IPESPFYLEGHGGLFEYIETRLKENGHMVIVI 341 (525)
Q Consensus 305 ad~iL-IPE~pf~leg~~~lle~I~~rl~~~g~~VIVV 341 (525)
+|.++ +|-.-+... +++++++.++..+.-+--|++=
T Consensus 103 adavlv~~P~y~~~~-~~~l~~~f~~va~a~~lPiilY 139 (297)
T 3flu_A 103 ADYTLSVVPYYNKPS-QEGIYQHFKTIAEATSIPMIIY 139 (297)
T ss_dssp CSEEEEECCCSSCCC-HHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCEEEECCCCCCCCC-HHHHHHHHHHHHHhCCCCEEEE
Confidence 77544 343333332 5578888776655544445543
No 141
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=31.69 E-value=3.1e+02 Score=25.27 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=68.8
Q ss_pred eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-CcHH
Q 009804 154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-HDTS 232 (525)
Q Consensus 154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-~d~~ 232 (525)
.+|||+...-.-|-...++.++...+.. +|. +++ +.++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 47 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKE-LGY-KII--------------------------------VEDSQNDSSKEL 47 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HTC-EEE--------------------------------EEECTTCHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHh-cCc-EEE--------------------------------EecCCCCHHHHH
Confidence 4788888766677777888888877754 442 221 1111111 2234
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC--C--CCCc--hhhHHHHHHhhhc-C-C
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND--I--PVPL--LTWFIAMYATLAS-R-D 304 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND--I--~gtD--~sG~IAl~aaLAs-~-~ 304 (525)
+.++.|...++|++++.+.+.... ....+.+.+.++ +||.+=...+++ . .++| .+|+.|+.--+.. + .
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~i--PvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~gg~ 123 (283)
T 2ioy_A 48 SNVEDLIQQKVDVLLINPVDSDAV--VTAIKEANSKNI--PVITIDRSANGGDVVCHIASDNVKGGEMAAEFIAKALKGK 123 (283)
T ss_dssp HHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHTTC--CEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCEEEEeCCchhhh--HHHHHHHHHCCC--eEEEecCCCCCcceeEEEecChHHHHHHHHHHHHHHcCCC
Confidence 567788889999999987654321 112244455575 456443323221 1 1234 6788887655554 3 5
Q ss_pred ccEEEcCC
Q 009804 305 VDCCLIPE 312 (525)
Q Consensus 305 ad~iLIPE 312 (525)
-.+++|-.
T Consensus 124 ~~I~~i~g 131 (283)
T 2ioy_A 124 GNVVELEG 131 (283)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEEC
Confidence 67777743
No 142
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=31.08 E-value=1.3e+02 Score=29.52 Aligned_cols=105 Identities=11% Similarity=0.017 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEEEcc-chhhhccCCeEeCChhhhhcccccCcccccccCC---CCcHHHHHHH--HH
Q 009804 166 PGLNTVIREIVYSLYYMYGVKRVLGIDG-GYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG---GHDTSKIVDS--IQ 239 (525)
Q Consensus 166 PGlN~vIr~lv~~l~~~~g~~~V~Gi~~-G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~---~~d~~~iv~~--l~ 239 (525)
|--+...+.+++.+...+|..+|.-+.. ... +. ..+.....+.+...|+++...... ..++...+.. ++
T Consensus 122 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~--~g---~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~ 196 (391)
T 3eaf_A 122 PDYSTQACSGLAFLASEFGQGKLALAYDSKVA--YS---RSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREML 196 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEEEECTTCH--HH---HTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEEecCCh--hH---HHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHH
Confidence 3344555666666654346555554432 110 00 011111223334456665544332 3578888888 99
Q ss_pred HcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 240 DRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 240 ~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
+.+.+++|+.+ ++. .+..+.+.+++.|+++++++..
T Consensus 197 ~~~~dav~~~~-~~~--~~~~~~~~~~~~g~~~~~~~~~ 232 (391)
T 3eaf_A 197 AADPDYVWCGN-TIS--SCSLLGRAMAKVGLDAFLLTNV 232 (391)
T ss_dssp TTCCSEEEECS-CHH--HHHHHHHHHHHHTCCCEEEECG
T ss_pred HcCCCEEEEec-CcH--HHHHHHHHHHHCCCCceEEEec
Confidence 99999887754 332 3445566777889998888754
No 143
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=31.06 E-value=46 Score=33.90 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHcCC---CEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccc
Q 009804 229 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTI 281 (525)
Q Consensus 229 ~d~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTI 281 (525)
+...++++.+.++++ |.++-+||--.++.|..++-.+ .+| +++|.||-|.
T Consensus 78 ~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 130 (368)
T 2gru_A 78 STVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF 130 (368)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 347888899999995 9999999998888888777532 346 6799999995
No 144
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=30.38 E-value=3.7e+02 Score=25.81 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGD 252 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGd 252 (525)
.+..+.++.|.+.++|++|++|..
T Consensus 49 ~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 49 AEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp GGHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHHcCCCEEEECChh
Confidence 345678888999999999999854
No 145
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=30.34 E-value=1.4e+02 Score=28.74 Aligned_cols=105 Identities=22% Similarity=0.357 Sum_probs=57.2
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCC----eE-----eCChhhhhcccccCcccccccC-
Q 009804 157 CIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN----TI-----ALTPKGVNDIHKRGGTVLGTSR- 226 (525)
Q Consensus 157 aIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~----~i-----~Lt~~~v~~i~~~GGtiLGSsR- 226 (525)
++|.+||+.|= ....+.+ ++.. .-++|+-.|..=|++.. ++ .++++..+.+.. .+.-...
T Consensus 34 v~Iv~~G~~~~-~~~~~~~----~~~~--~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~---~i~~~~~k 103 (231)
T 2omk_A 34 AIILANGEYPA-HELPLRL----LAEA--QFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS---IILQISDQ 103 (231)
T ss_dssp EEEECSSSCCC-SHHHHHH----HHHC--SCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG---GEECCCSS
T ss_pred EEEEECCCCch-hHHHHHH----HhcC--CEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC---EEEeCCCC
Confidence 45556777651 2222222 2222 36899999998887643 22 233333333321 1221111
Q ss_pred CCCcHHHHHHHHHHcCCCEEEEEcCCcc-----hHHHHHHHHHHHHcCCce
Q 009804 227 GGHDTSKIVDSIQDRGINQVYIIGGDGT-----QKGASVIYEEVRRRGLKV 272 (525)
Q Consensus 227 ~~~d~~~iv~~l~~~~Id~L~vIGGdgS-----~~~A~~L~e~~~~~g~~i 272 (525)
..-|.++++..+.+++.+.++++|+-|. +.....|.++ .+++.++
T Consensus 104 D~TD~e~Al~~a~~~g~~~I~i~Ga~GgRlDH~laNi~lL~~~-~~~~~~i 153 (231)
T 2omk_A 104 ETNDQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEY-MRSGMEV 153 (231)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHHHHH-HHTTCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECccCCchhHHHHHHHHHHHH-HhcCCeE
Confidence 1237999999999999999999999764 4444445443 3345443
No 146
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.88 E-value=3.8e+02 Score=25.67 Aligned_cols=113 Identities=8% Similarity=0.068 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHH
Q 009804 153 EVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTS 232 (525)
Q Consensus 153 ~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~ 232 (525)
..+||++...-.-|-...++.++...+.. +|. ++.-+ -+.. .+...
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~-~~~~~ 109 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKA-AGY-QMLVA-------------------------------EANS-VQAQD 109 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHH-HTC-EEEEE-------------------------------ECCS-HHHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------CCCC-hHHHH
Confidence 45899999877778888899999888865 453 33210 0111 22345
Q ss_pred HHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHHHhhhcCCccE
Q 009804 233 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMYATLASRDVDC 307 (525)
Q Consensus 233 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~aaLAs~~ad~ 307 (525)
+.++.|...++|++++.+- .+.+.+.+ ++||.+=..+++ +++ .+| .+|+.|+.--+..|+-.+
T Consensus 110 ~~~~~l~~~~vdGiIi~~~----------~~~~~~~~--iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I 177 (333)
T 3jvd_A 110 VVMESLISIQAAGIIHVPV----------VGSIAPEG--IPMVQLTRGELGPGFPRVLCDDEAGFFQLTESVLGGSGMNI 177 (333)
T ss_dssp HHHHHHHHHTCSEEEECCC----------TTCCC-CC--SCEEEECC----CCSCEEEECHHHHHHHHHHHHCCSSSCEE
T ss_pred HHHHHHHhCCCCEEEEcch----------HHHHhhCC--CCEEEECccCCCCCCCEEEEChHHHHHHHHHHHHHCCCCeE
Confidence 7788899999999999886 12233345 456644332221 111 233 788888876666655666
Q ss_pred EEcC
Q 009804 308 CLIP 311 (525)
Q Consensus 308 iLIP 311 (525)
.+|-
T Consensus 178 ~~i~ 181 (333)
T 3jvd_A 178 AALV 181 (333)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6664
No 147
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=29.07 E-value=51 Score=31.04 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=54.2
Q ss_pred EEEEEcC-CCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 155 YACIVTC-GGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 155 ~iaIvts-GG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
+|+|++. --|-| +...+...|.. +|+. .++. +.+--|..+.+.+
T Consensus 23 ~V~IimGS~SD~~----v~~~a~~~L~~-~Gi~-----------------~dv~-------------V~SaHR~p~~l~~ 67 (182)
T 1u11_A 23 VVGIIMGSQSDWE----TMRHADALLTE-LEIP-----------------HETL-------------IVSAHRTPDRLAD 67 (182)
T ss_dssp SEEEEESSGGGHH----HHHHHHHHHHH-TTCC-----------------EEEE-------------ECCTTTCHHHHHH
T ss_pred EEEEEECcHHHHH----HHHHHHHHHHH-cCCC-----------------eEEE-------------EEcccCCHHHHHH
Confidence 6787773 23678 67777777754 6642 1111 4555677777788
Q ss_pred HHHHHHHcCCCEEEEE-cCCcchHHHHHHHHHHHHcCCceeEEEeecccc
Q 009804 234 IVDSIQDRGINQVYII-GGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID 282 (525)
Q Consensus 234 iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID 282 (525)
++++.++.+++.+|.+ |+.+.+-+.. +- ....+|||||-...
T Consensus 68 ~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 68 YARTAAERGLNVIIAGAGGAAHLPGMC--AA-----WTRLPVLGVPVESR 110 (182)
T ss_dssp HHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCT
T ss_pred HHHHHHhCCCcEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCCC
Confidence 8888888889976665 4444454433 22 23578999997643
No 148
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=29.05 E-value=83 Score=29.99 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=53.1
Q ss_pred eEEEEEccchhhhcc---------CCeEeCChhhhhcccccCcccccccCC--CCcHHHHHHHHHHcCCCEEEEEcCCcc
Q 009804 186 KRVLGIDGGYRGFYA---------KNTIALTPKGVNDIHKRGGTVLGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT 254 (525)
Q Consensus 186 ~~V~Gi~~G~~GL~~---------~~~i~Lt~~~v~~i~~~GGtiLGSsR~--~~d~~~iv~~l~~~~Id~L~vIGGdgS 254 (525)
.-++|+-.|..=|++ +++=.++++..+.+...|-.++-.... .-|++++++.+.+++.+-++++|+-|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467888888876654 333356666666665555445544333 247999999999999999999999875
Q ss_pred -----hHHHHHHHHH
Q 009804 255 -----QKGASVIYEE 264 (525)
Q Consensus 255 -----~~~A~~L~e~ 264 (525)
+.....|.+.
T Consensus 106 R~DH~lani~ll~~~ 120 (222)
T 3lm8_A 106 RADHFLGNIQLLYKG 120 (222)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 4444445444
No 149
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=28.98 E-value=2.9e+02 Score=24.13 Aligned_cols=95 Identities=9% Similarity=0.090 Sum_probs=56.6
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccE-
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDC- 307 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~- 307 (525)
++++++++.|.+. +.++++|-.+|...|..++..+.+.|.+ +..++. ....+........ .-|+
T Consensus 27 ~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~~~g~~--~~~~~~----------~~~~~~~~~~~~~-~~d~~ 91 (187)
T 3sho_A 27 EAIEAAVEAICRA--DHVIVVGMGFSAAVAVFLGHGLNSLGIR--TTVLTE----------GGSTLTITLANLR-PTDLM 91 (187)
T ss_dssp HHHHHHHHHHHHC--SEEEEECCGGGHHHHHHHHHHHHHTTCC--EEEECC----------CTHHHHHHHHTCC-TTEEE
T ss_pred HHHHHHHHHHHhC--CEEEEEecCchHHHHHHHHHHHHhcCCC--EEEecC----------CchhHHHHHhcCC-CCCEE
Confidence 4578899999875 6999999999999999998888776654 444331 1122333333333 2343
Q ss_pred EEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEec
Q 009804 308 CLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAE 343 (525)
Q Consensus 308 iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAE 343 (525)
++|--...+. ++++.+ +..+++|--+|++.-
T Consensus 92 i~iS~sG~t~----~~~~~~-~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 92 IGVSVWRYLR----DTVAAL-AGAAERGVPTMALTD 122 (187)
T ss_dssp EEECCSSCCH----HHHHHH-HHHHHTTCCEEEEES
T ss_pred EEEeCCCCCH----HHHHHH-HHHHHCCCCEEEEeC
Confidence 4444333332 344443 345566666666553
No 150
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=28.71 E-value=45 Score=27.90 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCceeEEEeeccccCCCC
Q 009804 257 GASVIYEEVRRRGLKVVVAGIPKTIDNDIP 286 (525)
Q Consensus 257 ~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~ 286 (525)
....|.+.+++++...-|||+|++.|+...
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 345566666666777789999999998764
No 151
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=28.48 E-value=28 Score=31.16 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHH--HHHHHHHcCCceeEEEeeccccC
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASV--IYEEVRRRGLKVVVAGIPKTIDN 283 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~--L~e~~~~~g~~i~VIgIPKTIDN 283 (525)
.+.+++++.|++.+++-++|+||-..+..+.. +.+ .+.+.-+|+.+.+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 47899999999999999999999776665554 322 3667778887743
No 152
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=28.39 E-value=4e+02 Score=26.21 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcch-----HHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQ-----KGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~-----~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+++.++.+.+.|+++|++.|..|-. .-=.++.+...+. +-+++|| ..|-.|+.. ++=-+|-++.-+ +
T Consensus 38 l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvi--aGvg~~~t~---~ai~la~~a~~~--G 110 (304)
T 3l21_A 38 AARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVI--AGAGTYDTA---HSIRLAKACAAE--G 110 (304)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEE--EECCCSCHH---HHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--EeCCCCCHH---HHHHHHHHHHHc--C
Confidence 6788888888999999999977743 3333344444332 2234444 456666543 554555444433 5
Q ss_pred ccEEE-cCCCCCCccchhhHHHHHHHHHHcCCcEEEE
Q 009804 305 VDCCL-IPESPFYLEGHGGLFEYIETRLKENGHMVIV 340 (525)
Q Consensus 305 ad~iL-IPE~pf~leg~~~lle~I~~rl~~~g~~VIV 340 (525)
+|.++ +|-.-+.. .+++++++.++..+.-+--|++
T Consensus 111 adavlv~~P~y~~~-s~~~l~~~f~~va~a~~lPiil 146 (304)
T 3l21_A 111 AHGLLVVTPYYSKP-PQRGLQAHFTAVADATELPMLL 146 (304)
T ss_dssp CSEEEEECCCSSCC-CHHHHHHHHHHHHTSCSSCEEE
T ss_pred CCEEEECCCCCCCC-CHHHHHHHHHHHHHhcCCCEEE
Confidence 77443 34333332 2557888877665554444554
No 153
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=28.12 E-value=45 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=36.8
Q ss_pred cccccCCCCcHHHHHHHHHHcCCCEEEEE-cCCcchHHHHHHHHHHHHcCCceeEEEeecccc
Q 009804 221 VLGTSRGGHDTSKIVDSIQDRGINQVYII-GGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID 282 (525)
Q Consensus 221 iLGSsR~~~d~~~iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID 282 (525)
+.+--|..+.+.+++++.++.+++.+|.+ |+.+.+-+.. +- ....+|||||-...
T Consensus 45 V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 45 VVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMV--AA-----KTNLPVIGVPVQSK 100 (170)
T ss_dssp ECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HT-----TCCSCEEEEEECCT
T ss_pred EEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCCC
Confidence 45556777778888888888889976655 4444444433 21 34678999997643
No 154
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=28.11 E-value=72 Score=30.78 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHc-C----CCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 228 GHDTSKIVDSIQDR-G----INQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 228 ~~d~~~iv~~l~~~-~----Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
..|+..+.+.+.++ . =|-++|=||-|=+..|..+.++ .|++++|+|+-|
T Consensus 65 ~DDya~m~Evl~RR~~r~~~PDLiliDGGkgQl~~a~~vl~~---lg~~i~v~glaK 118 (220)
T 2nrt_A 65 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAK 118 (220)
T ss_dssp CCHHHHHHHHHHHHHTTSCCCSEEEESSSHHHHHHHHHHHHH---TTCCCCEEEECT
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEEEC
Confidence 46888888888876 2 4777777999999988887765 488899999988
No 155
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=27.90 E-value=3.6e+02 Score=26.38 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcc-----hHHHHHHHHHHHHc-CC-ceeEEEeeccccCCCCCCchhhHHHHHHhhhcC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGT-----QKGASVIYEEVRRR-GL-KVVVAGIPKTIDNDIPVPLLTWFIAMYATLASR 303 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS-----~~~A~~L~e~~~~~-g~-~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~ 303 (525)
+++.++.+.+.|+++|++.|..|- ..-=.++.+...+. +- +++|| ..|-.|+.. .+=-+|-++.= .
T Consensus 30 l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpvi--aGvg~~~t~---~ai~la~~a~~-~- 102 (301)
T 3m5v_A 30 YARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVL--AGAGSNATH---EAVGLAKFAKE-H- 102 (301)
T ss_dssp HHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE--EECCCSSHH---HHHHHHHHHHH-T-
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEE--EeCCCCCHH---HHHHHHHHHHH-c-
Confidence 677888888889999988887773 23333344444332 22 34444 456666543 44444444432 2
Q ss_pred CccEEEc-CCCCCCccchhhHHHHHHHHHHcCCcEEEE
Q 009804 304 DVDCCLI-PESPFYLEGHGGLFEYIETRLKENGHMVIV 340 (525)
Q Consensus 304 ~ad~iLI-PE~pf~leg~~~lle~I~~rl~~~g~~VIV 340 (525)
++|.+++ |-.-+... ++++.++.++..+.-+--|++
T Consensus 103 Gadavlv~~P~y~~~s-~~~l~~~f~~va~a~~lPiil 139 (301)
T 3m5v_A 103 GADGILSVAPYYNKPT-QQGLYEHYKAIAQSVDIPVLL 139 (301)
T ss_dssp TCSEEEEECCCSSCCC-HHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCEEEEcCCCCCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 5774433 33323222 557777777655544444544
No 156
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=27.82 E-value=1.2e+02 Score=25.88 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCceeEEEeeccccCCCCCCc--hhhHHHHHHhhhcCCccEEEcCCCC-CCccchhhHHHHHHHHHHc
Q 009804 257 GASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--LTWFIAMYATLASRDVDCCLIPESP-FYLEGHGGLFEYIETRLKE 333 (525)
Q Consensus 257 ~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--~sG~IAl~aaLAs~~ad~iLIPE~p-f~leg~~~lle~I~~rl~~ 333 (525)
.-..+.+++.++|+.+ +.+ =+|..+.|+. .-||-.+...+..+.+|.+++.+.. +.-. ..+.+..+.+.+++
T Consensus 26 Q~~~l~~~a~~~g~~~--~~~--~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R~-~~~~~~~~~~~l~~ 100 (138)
T 3bvp_A 26 QIDRLTKYAEAMGWQV--SDT--YTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKLDRLSRS-VRDTLYLVKDVFTK 100 (138)
T ss_dssp HHHHHHHHHHHTTCEE--EEE--EEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSHHHHCSC-HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHCCCEE--EEE--EEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeCCccccc-HHHHHHHHHHHHHH
Confidence 3455667777778653 322 2355566653 7899999988888788999998742 2211 11223345556677
Q ss_pred CCcEEEEEecCC
Q 009804 334 NGHMVIVIAEGA 345 (525)
Q Consensus 334 ~g~~VIVVAEGa 345 (525)
+|-.++++.|+.
T Consensus 101 ~gv~l~~~~~~~ 112 (138)
T 3bvp_A 101 NKIDFISLNESI 112 (138)
T ss_dssp GTCEEEETTTTE
T ss_pred CCCEEEEecCCC
Confidence 788888888764
No 157
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=27.67 E-value=56 Score=30.74 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=56.5
Q ss_pred EEEEc-CCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHHH
Q 009804 156 ACIVT-CGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKI 234 (525)
Q Consensus 156 iaIvt-sGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~i 234 (525)
|+|+. |--|-| +...+...|.. +|+. .+.. +++--|..+.+.+.
T Consensus 25 V~IimGS~SD~~----v~~~a~~~L~~-~gI~--------------~e~~----------------V~SAHRtp~~l~~~ 69 (181)
T 4b4k_A 25 VGVIMGSTSDWE----TMKYACDILDE-LNIP--------------YEKK----------------VVSAHRTPDYMFEY 69 (181)
T ss_dssp EEEEESSGGGHH----HHHHHHHHHHH-TTCC--------------EEEE----------------ECCTTTSHHHHHHH
T ss_pred EEEEECCHhHHH----HHHHHHHHHHH-cCCC--------------eeEE----------------EEccccChHHHHHH
Confidence 78877 334788 66666666654 6641 0111 45566777778888
Q ss_pred HHHHHHcCCCEEEEEcC-CcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 235 VDSIQDRGINQVYIIGG-DGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGG-dgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
+++.++.+++.+|..-| .+-+-+...- ...++|||||-. ...+.|.|
T Consensus 70 ~~~a~~~g~~ViIa~AG~aahLpGvvAa-------~T~~PVIGVPv~-s~~l~G~D 117 (181)
T 4b4k_A 70 AETARERGLKVIIAGAGGAAHLPGMVAA-------KTNLPVIGVPVQ-SKALNGLD 117 (181)
T ss_dssp HHHTTTTTCCEEEEEECSSCCHHHHHHT-------TCCSCEEEEECC-CTTTTTHH
T ss_pred HHHHHhcCceEEEEeccccccchhhHHh-------cCCCCEEEEecC-CCCccchh
Confidence 88888899997776644 4444443321 346789999973 22345555
No 158
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=27.31 E-value=95 Score=31.95 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
..+||.|+-+||- -++ +...+.+..++.+||.. .|-.|..... ...+ + .-...|.
T Consensus 2 ~~mkvlviG~ggr---e~a----la~~l~~s~~v~~v~~~-pgn~g~~~~~----------~~~~-----~--~~~~~d~ 56 (431)
T 3mjf_A 2 NAMNILIIGNGGR---EHA----LGWKAAQSPLADKIYVA-PGNAGTALEP----------TLEN-----V--DIAATDI 56 (431)
T ss_dssp -CEEEEEEECSHH---HHH----HHHHHTTCTTEEEEEEE-ECCHHHHHCT----------TCEE-----C--CCCTTCH
T ss_pred CCcEEEEECCCHH---HHH----HHHHHHhCCCCCEEEEE-CCCHHHhhhc----------ccce-----e--cCCcCCH
Confidence 3479999988863 233 33444443444577776 3444432110 0000 0 0012468
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEE
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAG 276 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIg 276 (525)
+.+++.++++++|.+++ |.+..+ +..+++.+++.|+ +++|
T Consensus 57 ~~l~~~a~~~~id~vv~-g~e~~l--~~~~~~~l~~~Gi--~~~G 96 (431)
T 3mjf_A 57 AGLLAFAQSHDIGLTIV-GPEAPL--VIGVVDAFRAAGL--AIFG 96 (431)
T ss_dssp HHHHHHHHHTTEEEEEE-CSHHHH--HTTHHHHHHHTTC--CEES
T ss_pred HHHHHHHHHhCcCEEEE-CCchHH--HHHHHHHHHhcCC--CeeC
Confidence 88889999999986654 544332 2346666766674 3554
No 159
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=26.92 E-value=2.7e+02 Score=27.50 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=65.0
Q ss_pred EeCChhhhhcccccCcccccccCCCCcHHHHHHHHHHcCCCEEEEEc----CCcchHHHHHHHHHHHHc--CCceeEEEe
Q 009804 204 IALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIG----GDGTQKGASVIYEEVRRR--GLKVVVAGI 277 (525)
Q Consensus 204 i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L~vIG----GdgS~~~A~~L~e~~~~~--g~~i~VIgI 277 (525)
++++++++-.....++.+.-||.- ...+..+.+++ +-+.+++|. =-||+..|...++.+.+. +.+|.||
T Consensus 60 ~di~~~efy~~~~~~~~~p~TSqp--s~~~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi-- 134 (298)
T 3jr7_A 60 DSLKQEELLLKIAESTSCAKTSCP--SPERYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVF-- 134 (298)
T ss_dssp TTSCHHHHHHHHHHCSSCCEEECC--CHHHHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEE--
T ss_pred CCCCHHHHHHHHHhCCCCceeCCC--CHHHHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEEEE--
Confidence 468888777766666666666653 34555566665 667888773 578999998888776532 3455554
Q ss_pred eccccCCCCCCc-hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc
Q 009804 278 PKTIDNDIPVPL-LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE 333 (525)
Q Consensus 278 PKTIDNDI~gtD-~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~ 333 (525)
|. ..+. --|++++.|+-.. |...+++ ++++.+++..++
T Consensus 135 ----DS--~~~s~g~g~lv~~Aa~l~---------~~G~s~e---eI~~~l~~~~~~ 173 (298)
T 3jr7_A 135 ----NS--RSASVGETLIALKVQQCE---------KAGMTFE---EVVESVECYIEE 173 (298)
T ss_dssp ----EC--SSCTHHHHHHHHHHHHHH---------HTTCCHH---HHHHHHHHHHHH
T ss_pred ----CC--CchhHHHHHHHHHHHHHH---------HcCCCHH---HHHHHHHHHHhh
Confidence 22 2221 5688887766433 1223444 666766654433
No 160
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=25.93 E-value=3.6e+02 Score=26.57 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcch-----HHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCc
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQ-----KGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDV 305 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~-----~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~a 305 (525)
+++.++.+.+.|+++|++.|..|-. .-=.++.+...+..-+++|| ..|-.|+.. .+=-+|-++.=+ ++
T Consensus 31 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpVi--aGvg~~~t~---~ai~la~~A~~~--Ga 103 (313)
T 3dz1_A 31 IDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVI--VGVSAPGFA---AMRRLARLSMDA--GA 103 (313)
T ss_dssp HHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEE--EECCCSSHH---HHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEE--EecCCCCHH---HHHHHHHHHHHc--CC
Confidence 5677888888888888888876632 22223334333332134443 466666544 333444443322 46
Q ss_pred cEEEc-CCCCCCccchhhHHHHHHHHHHc
Q 009804 306 DCCLI-PESPFYLEGHGGLFEYIETRLKE 333 (525)
Q Consensus 306 d~iLI-PE~pf~leg~~~lle~I~~rl~~ 333 (525)
|.+++ |-. |.. .+++++++.+...+.
T Consensus 104 davlv~~P~-~~~-s~~~l~~~f~~va~a 130 (313)
T 3dz1_A 104 AGVMIAPPP-SLR-TDEQITTYFRQATEA 130 (313)
T ss_dssp SEEEECCCT-TCC-SHHHHHHHHHHHHHH
T ss_pred CEEEECCCC-CCC-CHHHHHHHHHHHHHh
Confidence 64443 222 222 255777776665544
No 161
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=25.92 E-value=3.8e+02 Score=25.06 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
+++++++.+++.|++++=+.+.+........+.+.++++|+++..++.
T Consensus 42 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 89 (290)
T 2zvr_A 42 DLRKGMELAKRVGYQAVEIAVRDPSIVDWNEVKILSEELNLPICAIGT 89 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCGGGSCHHHHHHHHHHHTCCEEEEEC
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCcchhhHHHHHHHHHHcCCeEEEEec
Confidence 578999999999999998887754444566777888888998877776
No 162
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=25.82 E-value=68 Score=30.51 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEee
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIP 278 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIP 278 (525)
.++..+++.+++.+.+++|+.+-+.. |..+.+.+++.|+++++++..
T Consensus 180 ~d~~~~~~~l~~~~~d~i~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~ 226 (346)
T 1usg_A 180 KDFSALIARLKKENIDFVYYGGYYPE---MGQMLRQARSVGLKTQFMGPE 226 (346)
T ss_dssp CCCHHHHHHHHHTTCCEEEEESCHHH---HHHHHHHHHHTTCCCEEEECG
T ss_pred cCHHHHHHHHHhcCCCEEEEcCcchH---HHHHHHHHHHcCCCCeEEecC
Confidence 45567788888889999988763322 334556677789888877643
No 163
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=25.59 E-value=4.4e+02 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGL 270 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~ 270 (525)
..+.+++.++++++|.++. +-+.....+..+.+.+++.|+
T Consensus 60 ~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g~ 99 (331)
T 2pn1_A 60 YIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIGV 99 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCCc
Confidence 4788899999999998765 333334344456666665564
No 164
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=25.32 E-value=4.8e+02 Score=25.37 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=22.1
Q ss_pred CccEEEcCCCCCCccchhhHHHHHHHHHHcCCcE-EEEEecCC
Q 009804 304 DVDCCLIPESPFYLEGHGGLFEYIETRLKENGHM-VIVIAEGA 345 (525)
Q Consensus 304 ~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~-VIVVAEGa 345 (525)
++|.+++|..|+. + .+.+.+..++.|-. +.+++=..
T Consensus 123 Gvdgvii~Dlp~e-----e-~~~~~~~~~~~gl~~i~liaP~t 159 (267)
T 3vnd_A 123 GVDSVLIADVPVE-----E-SAPFSKAAKAHGIAPIFIAPPNA 159 (267)
T ss_dssp TCCEEEETTSCGG-----G-CHHHHHHHHHTTCEEECEECTTC
T ss_pred CCCEEEeCCCCHh-----h-HHHHHHHHHHcCCeEEEEECCCC
Confidence 7999999988874 2 23444555565543 44665444
No 165
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=25.14 E-value=4.4e+02 Score=24.92 Aligned_cols=158 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred cCCCeEEEEEc--CCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC
Q 009804 150 ESDEVYACIVT--CGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG 227 (525)
Q Consensus 150 ~~~~~~iaIvt--sGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~ 227 (525)
.++.++||+++ +|...|-...+.+++-..+..... .|-+.+.-++|. +.-+...
T Consensus 1 ~~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~-----------~ggi~G~~~~l~-------------~~d~~~~ 56 (358)
T 3hut_A 1 MSLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNA-----------AGGVGGRPVDIL-------------YADSRDD 56 (358)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHH-----------TTTBTTBCEEEE-------------EEECTTC
T ss_pred CCccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHh-----------hCCCCCeEEEEE-------------EecCCCC
Q ss_pred CCcHHHHHHHHH-HcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe----eccccCC-----CCCCc-hhhHHHH
Q 009804 228 GHDTSKIVDSIQ-DRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI----PKTIDND-----IPVPL-LTWFIAM 296 (525)
Q Consensus 228 ~~d~~~iv~~l~-~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI----PKTIDND-----I~gtD-~sG~IAl 296 (525)
.....+.++.|. +.++++++ |-.+-..+..+.+.+.+.+ |++|.+ |.--+.+ +...+ ..+..++
T Consensus 57 ~~~~~~~~~~l~~~~~v~~ii---g~~~s~~~~~~~~~~~~~~--iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (358)
T 3hut_A 57 ADQARTIARAFVDDPRVVGVL---GDFSSTVSMAAGSIYGKEG--MPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNA 131 (358)
T ss_dssp HHHHHHHHHHHHHCTTEEEEE---ECSSHHHHHHHHHHHHHHT--CCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHH
T ss_pred HHHHHHHHHHHhccCCcEEEE---cCCCcHHHHHHHHHHHHCC--CcEEecCCCCcccccCCCeEEEecCChHHHHHHHH
Q ss_pred HHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEE
Q 009804 297 YATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVI 339 (525)
Q Consensus 297 ~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VI 339 (525)
.-.+..+.-.+.+|-+..-.-. ...+.+++.+++.|..++
T Consensus 132 ~~l~~~g~~~ia~i~~~~~~~~---~~~~~~~~~l~~~g~~v~ 171 (358)
T 3hut_A 132 AWMIGDGFTSVAVIGVTTDWGL---SSAQAFRKAFELRGGAVV 171 (358)
T ss_dssp HHHHHTTCCEEEEEEESSHHHH---HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCCEEEEEecCcHHHH---HHHHHHHHHHHHcCCEEE
No 166
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=25.05 E-value=1.9e+02 Score=29.84 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=53.6
Q ss_pred cCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC
Q 009804 150 ESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 150 ~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
.|..+||.|+-+||. -+++++.+ .+..++.+||.. .|-.|....... . .+ ...
T Consensus 18 ~p~~m~ilvlG~ggr---e~ala~~l----~~s~~v~~v~~~-pgn~g~~~~~~~----------~-----~i----~~~ 70 (442)
T 3lp8_A 18 GPGSMNVLVIGSGGR---EHSMLHHI----RKSTLLNKLFIA-PGREGMSGLADI----------I-----DI----DIN 70 (442)
T ss_dssp --CCEEEEEEECSHH---HHHHHHHH----TTCTTEEEEEEE-ECCGGGTTTSEE----------C-----CC----CTT
T ss_pred CCCCCEEEEECCChH---HHHHHHHH----HhCCCCCEEEEE-CCChHHhhccce----------e-----ec----CcC
Confidence 467789999988742 34444444 343455566664 333343321100 0 00 235
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEE
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAG 276 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIg 276 (525)
|.+.+++.++++++|.+++ |.+..+ +..+++.+++.|+ +++|
T Consensus 71 d~~~l~~~a~~~~id~vv~-g~E~~l--~~~~~~~l~~~Gi--~~~G 112 (442)
T 3lp8_A 71 STIEVIQVCKKEKIELVVI-GPETPL--MNGLSDALTEEGI--LVFG 112 (442)
T ss_dssp CHHHHHHHHHHTTCCEEEE-CSHHHH--HTTHHHHHHHTTC--EEES
T ss_pred CHHHHHHHHHHhCCCEEEE-CCcHHH--HHHHHHHHHhcCC--cEec
Confidence 7899999999999997775 544433 2345666666674 4554
No 167
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=24.70 E-value=3.5e+02 Score=25.51 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=53.6
Q ss_pred hhhhcccccCcccccccCCCC--------cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 209 KGVNDIHKRGGTVLGTSRGGH--------DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 209 ~~v~~i~~~GGtiLGSsR~~~--------d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
..++.++..|| ++=||+..+ +..++++..++-|..++-+ | +.....+ +++ ..+++|+|+=|.
T Consensus 9 ~~~~~~~~~~~-livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~-~---~~~~i~~----ir~-~v~~Pvig~~k~ 78 (232)
T 3igs_A 9 QLDKNIAASGG-LIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRI-E---GIDNLRM----TRS-LVSVPIIGIIKR 78 (232)
T ss_dssp HHHHHHHHHCC-EEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEE-E---SHHHHHH----HHT-TCCSCEEEECBC
T ss_pred HHHHHhhhcCC-EEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEE-C---CHHHHHH----HHH-hcCCCEEEEEee
Confidence 34455555777 666888642 5789999999999999776 2 3333222 222 346778988665
Q ss_pred ccCC--CCCCchhhHHHHHHhhhcCCccEEEcC
Q 009804 281 IDND--IPVPLLTWFIAMYATLASRDVDCCLIP 311 (525)
Q Consensus 281 IDND--I~gtD~sG~IAl~aaLAs~~ad~iLIP 311 (525)
-..| +..+.+--. +..+++. ++|++++-
T Consensus 79 d~~~~~~~I~~~~~~--i~~~~~~-Gad~V~l~ 108 (232)
T 3igs_A 79 DLDESPVRITPFLDD--VDALAQA-GAAIIAVD 108 (232)
T ss_dssp CCSSCCCCBSCSHHH--HHHHHHH-TCSEEEEE
T ss_pred cCCCcceEeCccHHH--HHHHHHc-CCCEEEEC
Confidence 3222 443432222 2334555 79988753
No 168
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=24.66 E-value=3.9e+02 Score=26.51 Aligned_cols=103 Identities=11% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchH-----HHHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQK-----GASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~-----~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+++.++.+.+.|+++|++.|..|-.. -=.++.+...+. +-+++|| ..|-.|+.. ++=-+|-++.-+ +
T Consensus 34 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGvg~~~t~---~ai~la~~a~~~--G 106 (318)
T 3qfe_A 34 QERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIM--AGVGAHSTR---QVLEHINDASVA--G 106 (318)
T ss_dssp HHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEE--EECCCSSHH---HHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeCCCCCHH---HHHHHHHHHHHc--C
Confidence 67888888888999999998777322 222344443332 2234444 356666544 444444444432 5
Q ss_pred ccEEE-cCCCCCC--ccchhhHHHHHHHHHHcCCcEEEEE
Q 009804 305 VDCCL-IPESPFY--LEGHGGLFEYIETRLKENGHMVIVI 341 (525)
Q Consensus 305 ad~iL-IPE~pf~--leg~~~lle~I~~rl~~~g~~VIVV 341 (525)
+|.++ +|-..|. . .+++++++.+...+.-+--|++=
T Consensus 107 adavlv~~P~y~~kp~-~~~~l~~~f~~ia~a~~lPiilY 145 (318)
T 3qfe_A 107 ANYVLVLPPAYFGKAT-TPPVIKSFFDDVSCQSPLPVVIY 145 (318)
T ss_dssp CSEEEECCCCC---CC-CHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCEEEEeCCcccCCCC-CHHHHHHHHHHHHhhCCCCEEEE
Confidence 77443 3332222 1 14577777776655544445543
No 169
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=24.40 E-value=1e+02 Score=25.90 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
...++.|+-+|+.+- .+++.+.. .+..++.||.+ .+ +..... ...|=.++| .
T Consensus 3 ~~~~vlIiGaG~~g~-------~l~~~l~~-~~g~~vvg~~d-------~~-----~~~~g~-~i~g~pV~g-------~ 54 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGL-------QLANMLRQ-GKEFHPIAFID-------DD-----RKKHKT-TMQGITIYR-------P 54 (141)
T ss_dssp CCEEEEEECCSHHHH-------HHHHHHHH-SSSEEEEEEEC-------SC-----GGGTTC-EETTEEEEC-------G
T ss_pred CCCEEEEECCCHHHH-------HHHHHHHh-CCCcEEEEEEE-------CC-----cccCCC-EecCeEEEC-------H
Confidence 346888888776554 23333333 22367877653 21 111100 011223444 2
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
+.+.+.+++++++.+++--++.+......+.+.+.+.|++ |.-+|.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~--v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVE--VLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCE--EEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCe--EEECCC
Confidence 3456667889999998877766666777888888888854 666774
No 170
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=24.24 E-value=1.8e+02 Score=27.94 Aligned_cols=94 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred cCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCC
Q 009804 150 ESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGH 229 (525)
Q Consensus 150 ~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~ 229 (525)
..+..||||++. -.-|.++++-+++...|.. .|+.++.-+++. +.-......
T Consensus 5 ~~~~~~igi~q~-~~hp~ld~~~~G~~~~L~~--------------~G~~~g~nv~~~-------------~~~a~gd~~ 56 (302)
T 3lkv_A 5 MAKTAKVAVSQI-VEHPALDATRQGLLDGLKA--------------KGYEEGKNLEFD-------------YKTAQGNPA 56 (302)
T ss_dssp --CCEEEEEEES-CCCHHHHHHHHHHHHHHHH--------------TTCCBTTTEEEE-------------EEECTTCHH
T ss_pred hcCCceEEEEEe-ecChhHHHHHHHHHHHHHh--------------hCcccCCcEEEE-------------EEeCCCCHH
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEe
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGI 277 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgI 277 (525)
....+++.|...+.|.+|.||-.-++..+... ...+|-+.+|
T Consensus 57 ~~~~~~~~l~~~~~DlIiai~t~aa~a~~~~~------~~iPVVf~~v 98 (302)
T 3lkv_A 57 IAVQIARQFVGENPDVLVGIATPTAQALVSAT------KTIPIVFTAV 98 (302)
T ss_dssp HHHHHHHHHHTTCCSEEEEESHHHHHHHHHHC------SSSCEEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEEcCCHHHHHHHhhc------CCCCeEEEec
No 171
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=23.84 E-value=1.2e+02 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHcC---CCE--EEEEcCCcc--hHHHHHHHHHHHHcCCceeEEEeec
Q 009804 230 DTSKIVDSIQDRG---INQ--VYIIGGDGT--QKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 230 d~~~iv~~l~~~~---Id~--L~vIGGdgS--~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
-++.+.+.|++.. -.. ++++.|+.+ -.....+++.+++.|+++.+||+=.
T Consensus 89 aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~ 145 (192)
T 2x5n_A 89 GIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGE 145 (192)
T ss_dssp HHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESC
T ss_pred HHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCC
Confidence 3566667777642 222 666665543 3556778888888999999998843
No 172
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=23.67 E-value=3.6e+02 Score=24.68 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCCCCCc-------hhhHHHHHHhhhcCCccEEEcCCCCCCccc
Q 009804 283 NDIPVPL-------LTWFIAMYATLASRDVDCCLIPESPFYLEG 319 (525)
Q Consensus 283 NDI~gtD-------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg 319 (525)
.|+|..| .....++...++.-++=++..||-...+-+
T Consensus 41 ~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg 84 (190)
T 3u7r_A 41 GDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPG 84 (190)
T ss_dssp GGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCH
T ss_pred ccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCH
Confidence 3677654 234555566666534447888999888774
No 173
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=22.89 E-value=5.5e+02 Score=25.17 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=48.2
Q ss_pred HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCC---CCCCchhhHHHHHHhhhcCCccEEEc
Q 009804 234 IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDND---IPVPLLTWFIAMYATLASRDVDCCLI 310 (525)
Q Consensus 234 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDND---I~gtD~sG~IAl~aaLAs~~ad~iLI 310 (525)
++..+.+.+.+.|+..|+-.++.+. .++-.+++.|+++ +|.+|.+..++ ...-...|.+.+.-++ +++++++
T Consensus 58 ~l~~a~~~g~~~vv~~G~ssGN~g~-alA~~a~~~G~~~-~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~---GA~v~~~ 132 (341)
T 1f2d_A 58 IVPDIVEGDYTHLVSIGGRQSNQTR-MVAALAAKLGKKC-VLIQEDWVPIPEAEKDVYNRVGNIELSRIM---GADVRVI 132 (341)
T ss_dssp THHHHHHSCCSEEEEEEETTCHHHH-HHHHHHHHHTCEE-EEEEECCSCCCGGGTTTTTTSHHHHHHHHT---TCEEEEC
T ss_pred HHHHHHHcCCCEEEEcCCcchHHHH-HHHHHHHHhCCce-EEEeccCCCccccccccccccccHHHHHhC---CCEEEEe
Confidence 3444556788999988765555543 3566677789985 56689877521 1111135677665554 6889999
Q ss_pred CCCC
Q 009804 311 PESP 314 (525)
Q Consensus 311 PE~p 314 (525)
|...
T Consensus 133 ~~~~ 136 (341)
T 1f2d_A 133 EDGF 136 (341)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8654
No 174
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=22.49 E-value=5e+02 Score=25.58 Aligned_cols=104 Identities=8% Similarity=0.082 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcc-----hHHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGT-----QKGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASR 303 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS-----~~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~ 303 (525)
.+++.++.+.+.|+++|++.|..|- ..-=.++.+...+. +-+++|| ..|-.|+.. ++=-+|-++.=+.
T Consensus 29 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpVi--aGvg~~~t~---~ai~la~~A~~~G- 102 (311)
T 3h5d_A 29 AIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLI--AGVGTNDTR---DSIEFVKEVAEFG- 102 (311)
T ss_dssp HHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEE--EECCCSSHH---HHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeCCCcCHH---HHHHHHHHHHhcC-
Confidence 3788899999999999999998773 22333444444443 2234444 456666543 4434444443222
Q ss_pred CccEE-EcCCCCCCccchhhHHHHHHHHHHcCCcEEEE
Q 009804 304 DVDCC-LIPESPFYLEGHGGLFEYIETRLKENGHMVIV 340 (525)
Q Consensus 304 ~ad~i-LIPE~pf~leg~~~lle~I~~rl~~~g~~VIV 340 (525)
.+|.+ ++|-.-+... +++++++.++..+.-+--|++
T Consensus 103 a~davlv~~P~y~~~s-~~~l~~~f~~va~a~~lPiil 139 (311)
T 3h5d_A 103 GFAAGLAIVPYYNKPS-QEGMYQHFKAIADASDLPIII 139 (311)
T ss_dssp CCSEEEEECCCSSCCC-HHHHHHHHHHHHHSCSSCEEE
T ss_pred CCcEEEEcCCCCCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 23643 3343333332 557888877665554444554
No 175
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=22.43 E-value=53 Score=34.72 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=34.3
Q ss_pred cccccCCCCcHHHHHHHHHHcCCC-EEEEEc-CCcchHHHHHHHHHHHHcCCceeEEEeecc
Q 009804 221 VLGTSRGGHDTSKIVDSIQDRGIN-QVYIIG-GDGTQKGASVIYEEVRRRGLKVVVAGIPKT 280 (525)
Q Consensus 221 iLGSsR~~~d~~~iv~~l~~~~Id-~L~vIG-GdgS~~~A~~L~e~~~~~g~~i~VIgIPKT 280 (525)
+.+--|......+++++.++.++. .+|++. +.+.+-+. ++- ....+|||||-+
T Consensus 299 V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgv--va~-----~t~~PVIgvP~~ 353 (425)
T 2h31_A 299 VTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPV--MSG-----NTAYPVISCPPL 353 (425)
T ss_dssp ECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHH--HHH-----HCSSCEEECCCC
T ss_pred eeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhH--Hhc-----cCCCCEEEeeCc
Confidence 445567777788899999999995 555443 33444443 322 235789999953
No 176
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=22.39 E-value=1.4e+02 Score=29.57 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred ccccCcccccccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc----
Q 009804 214 IHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL---- 289 (525)
Q Consensus 214 i~~~GGtiLGSsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD---- 289 (525)
+.-.||+ +|+....+-+.++++.+....--.++.+.|.+-........+.. +.++.| .+++|
T Consensus 183 ilv~gGs-~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~~~~~~~~~~~---~~~~~v----------~~f~~dm~~ 248 (365)
T 3s2u_A 183 LLVLGGS-LGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTV---AVEADV----------APFISDMAA 248 (365)
T ss_dssp EEECCTT-TTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTHHHHHHHHHHT---TCCCEE----------ESCCSCHHH
T ss_pred EEEECCc-CCccccchhhHHHHHhcccccceEEEEecCccccccccceeccc---cccccc----------ccchhhhhh
Q ss_pred ----------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEE
Q 009804 290 ----------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIV 340 (525)
Q Consensus 290 ----------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIV 340 (525)
++|..++.=+++. +.-.|+|| .|+..+ +=...-.+.+.+.|.+++|
T Consensus 249 ~l~~aDlvI~raG~~Tv~E~~a~-G~P~Ilip-~p~~~~---~~Q~~NA~~l~~~G~a~~l 304 (365)
T 3s2u_A 249 AYAWADLVICRAGALTVSELTAA-GLPAFLVP-LPHAID---DHQTRNAEFLVRSGAGRLL 304 (365)
T ss_dssp HHHHCSEEEECCCHHHHHHHHHH-TCCEEECC------C---CHHHHHHHHHHTTTSEEEC
T ss_pred hhccceEEEecCCcchHHHHHHh-CCCeEEec-cCCCCC---cHHHHHHHHHHHCCCEEEe
No 177
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=22.06 E-value=1.7e+02 Score=27.45 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=59.8
Q ss_pred CCEEEEEcCCcchHHHHHHHH--HHHHcCCceeEEEeecc--------ccCCCC---------CC--------c----hh
Q 009804 243 INQVYIIGGDGTQKGASVIYE--EVRRRGLKVVVAGIPKT--------IDNDIP---------VP--------L----LT 291 (525)
Q Consensus 243 Id~L~vIGGdgS~~~A~~L~e--~~~~~g~~i~VIgIPKT--------IDNDI~---------gt--------D----~s 291 (525)
=..+++.+|+|.=++-.++.- .+..+|.++-++---|. +=+.+. ++ | ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 367999999998776555444 34456888777755553 112231 00 0 44
Q ss_pred hHHHHHHhhhcCCccEEEcCCCC----CCccchhhHHHHHHHHHHcCCcEEEEEecCCC
Q 009804 292 WFIAMYATLASRDVDCCLIPESP----FYLEGHGGLFEYIETRLKENGHMVIVIAEGAG 346 (525)
Q Consensus 292 G~IAl~aaLAs~~ad~iLIPE~p----f~leg~~~lle~I~~rl~~~g~~VIVVAEGa~ 346 (525)
+|-.+.-.++++..|++++=|.. |.+-...++++.|.+|.+ +-.||+-.=.+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~--~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG--HQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT--TCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC--CCEEEEECCCCc
Confidence 66666666777678888888873 333334466666654432 335555554443
No 178
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=22.00 E-value=5.1e+02 Score=25.58 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcch-----HHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQ-----KGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~-----~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+++.++.+.+.|+++|++.|..|-. .--.++.+...+. +-+++|| ..|-.|+.. .+=-+|-++.= . +
T Consensus 46 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGvg~~st~---eai~la~~A~~-~-G 118 (314)
T 3qze_A 46 LAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVI--AGTGANSTR---EAVALTEAAKS-G-G 118 (314)
T ss_dssp HHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEE--EECCCSSHH---HHHHHHHHHHH-T-T
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeCCCcCHH---HHHHHHHHHHH-c-C
Confidence 6788888889999999999977743 2223344433332 2234444 466666643 44344444432 2 5
Q ss_pred ccEEE-cCCCCCCccchhhHHHHHHHHHHcCCcEEEEE
Q 009804 305 VDCCL-IPESPFYLEGHGGLFEYIETRLKENGHMVIVI 341 (525)
Q Consensus 305 ad~iL-IPE~pf~leg~~~lle~I~~rl~~~g~~VIVV 341 (525)
+|.++ +|-.-+... +++++++.++..+.-+--|++=
T Consensus 119 adavlv~~P~y~~~s-~~~l~~~f~~va~a~~lPiilY 155 (314)
T 3qze_A 119 ADACLLVTPYYNKPT-QEGMYQHFRHIAEAVAIPQILY 155 (314)
T ss_dssp CSEEEEECCCSSCCC-HHHHHHHHHHHHHHSCSCEEEE
T ss_pred CCEEEEcCCCCCCCC-HHHHHHHHHHHHHhcCCCEEEE
Confidence 77543 343333332 5578888776655544445553
No 179
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=21.79 E-value=1.8e+02 Score=28.63 Aligned_cols=109 Identities=12% Similarity=0.030 Sum_probs=68.0
Q ss_pred EeCChhhhhcccccC-cccccccCCC-CcHHHHHHHHHHcCCCEEEEEc----CCcchHHHHHHHHHHHH-c-CCceeEE
Q 009804 204 IALTPKGVNDIHKRG-GTVLGTSRGG-HDTSKIVDSIQDRGINQVYIIG----GDGTQKGASVIYEEVRR-R-GLKVVVA 275 (525)
Q Consensus 204 i~Lt~~~v~~i~~~G-GtiLGSsR~~-~d~~~iv~~l~~~~Id~L~vIG----GdgS~~~A~~L~e~~~~-~-g~~i~VI 275 (525)
++++++.+-.....+ +...-||.-. .++.++.+.+.+.+ +.+++|. =-||+..|...++.+.+ + +.+|.||
T Consensus 44 ~di~~~efy~~~~~~~~~~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi 122 (297)
T 3nyi_A 44 VDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI 122 (297)
T ss_dssp TTBCHHHHHHHHHHCTTCCCEEECCCHHHHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCceecCCCHHHHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 467887777666665 4566777643 56788888887778 7777773 57999999988876633 2 4445554
Q ss_pred EeeccccCCCCCCc-hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc
Q 009804 276 GIPKTIDNDIPVPL-LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE 333 (525)
Q Consensus 276 gIPKTIDNDI~gtD-~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~ 333 (525)
| -..+- --|++++.|+-.. |...+++ ++++.+++..++
T Consensus 123 ------D--S~~~s~g~g~~v~~A~~l~---------~~G~s~~---eI~~~l~~~~~~ 161 (297)
T 3nyi_A 123 ------D--SKQNTVTQALLIDQFVRML---------EDGLSFE---QAMSKLDALMAS 161 (297)
T ss_dssp ------E--CSCCHHHHHHHHHHHHHHH---------HTTCCHH---HHHHHHHHHHHH
T ss_pred ------e--CCchHHHHHHHHHHHHHHH---------HcCCCHH---HHHHHHHHHHhh
Confidence 2 22221 5688888766332 1123444 677776654443
No 180
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.70 E-value=4.6e+02 Score=23.90 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=64.1
Q ss_pred CCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcH
Q 009804 152 DEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDT 231 (525)
Q Consensus 152 ~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~ 231 (525)
+..+||+++..-.-|-...++.++...+.+ +|. ++.-+.... + .+ +. ...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~~~~------~--------~~-------------~~-~~~ 56 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLAL-FDY-EMIVCSGKK------S--------HL-------------FI-PEK 56 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHT-TTC-EEEEEESTT------T--------TT-------------CC-CTT
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHH-CCC-eEEEEeCCC------C--------HH-------------HH-hhc
Confidence 445899998766678888899999888764 553 332111000 0 00 00 000
Q ss_pred HHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CC--CCCc--hhhHHHHHHhhhcCCcc
Q 009804 232 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DI--PVPL--LTWFIAMYATLASRDVD 306 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI--~gtD--~sG~IAl~aaLAs~~ad 306 (525)
++|++++.+.+.+... + +.+.+.+ ++||.+=..+++ ++ -.+| .+|++|+.--+..|.-.
T Consensus 57 ----------~vdgiI~~~~~~~~~~---~-~~l~~~~--iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~ 120 (277)
T 3cs3_A 57 ----------MVDGAIILDWTFPTKE---I-EKFAERG--HSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKK 120 (277)
T ss_dssp ----------TCSEEEEECTTSCHHH---H-HHHHHTT--CEEEESSSCCCSTTEEEEEECHHHHHHHHHHHHHHTTCSC
T ss_pred ----------cccEEEEecCCCCHHH---H-HHHHhcC--CCEEEEecCCCCCCCCEEEeCcHHHHHHHHHHHHHcCCce
Confidence 8999999998755321 2 3444456 556655333322 11 1123 77888876655555566
Q ss_pred EEEcC
Q 009804 307 CCLIP 311 (525)
Q Consensus 307 ~iLIP 311 (525)
++++-
T Consensus 121 i~~i~ 125 (277)
T 3cs3_A 121 VLLLS 125 (277)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76664
No 181
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=21.68 E-value=1.9e+02 Score=30.88 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=13.2
Q ss_pred CEEEE-EcCCcchHHHHHHHHH
Q 009804 244 NQVYI-IGGDGTQKGASVIYEE 264 (525)
Q Consensus 244 d~L~v-IGGdgS~~~A~~L~e~ 264 (525)
|++|+ =||-||+.-...+...
T Consensus 249 DAfIaLPGG~GTLEELfE~LTw 270 (462)
T 3gh1_A 249 HGIIIFPGGPGTAEELLYILGI 270 (462)
T ss_dssp SEEEECSCSHHHHHHHHHHHHH
T ss_pred CEEEEcCCCcchHHHHHHHHHH
Confidence 45554 5778888876655443
No 182
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=21.59 E-value=5e+02 Score=27.58 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCEEEEEc-------CCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcC-
Q 009804 232 SKIVDSIQDRGINQVYIIG-------GDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASR- 303 (525)
Q Consensus 232 ~~iv~~l~~~~Id~L~vIG-------GdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~- 303 (525)
+.|.+.+++++-+.++|++ |||--.-+ +++++ + ++||.+.. +...++.+.||-.+..+|...
T Consensus 75 ~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~~v~----~~~~~-~--~pVi~v~t---pgf~g~~~~G~~~al~alv~~~ 144 (525)
T 3aek_B 75 DALAAAHARYKPQAMAVALTCTAELLQDDPNGIS----RALNL-P--VPVVPLEL---PSYSRKENYGADETFRALVRAL 144 (525)
T ss_dssp HHHHHHHHHHCCSEEEEEECTTGGGSCCCHHHHH----HHHTC-S--SCEEECCC---CTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCcHHHHhcccHHHHH----HHhcC-C--CCEEEEEC---CCcCCchhHHHHHHHHHHHHHh
Confidence 3444556788999988887 45533322 33322 4 56776665 345555566776555554421
Q ss_pred --------CccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEE-EecCCCCcchhHHhhhhccccccCCccch-hHHH
Q 009804 304 --------DVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIV-IAEGAGQDLLAESIRSATQQDASGNKLLQ-DVGL 373 (525)
Q Consensus 304 --------~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIV-VAEGa~~~~~~~~~~~~~~~DasGn~~L~-dig~ 373 (525)
...+-||.+.+.....+.++ ..|++-+++-|.-+++ ...|..-+-+. ..-++.-|..+. ..+.
T Consensus 145 ~~~~~~~~~~~VNIlG~~~~g~~~~gD~-~eikrlL~~~Gi~v~~~~pgg~t~~ei~------~~~~A~~niv~~~~~g~ 217 (525)
T 3aek_B 145 AVPMERTPEVTCNLLGATALGFRHRDDV-AEVTKLLATMGIKVNVCAPLGASPDDLR------KLGQAHFNVLMYPETGE 217 (525)
T ss_dssp CCCCCCCSSCEEEEEEECTTCTTHHHHH-HHHHHHHHTTTCEEEEEEETTCCHHHHH------TGGGSSEEEECCHHHHH
T ss_pred ccCccCCCCCceEEEecCCCCCCChhhH-HHHHHHHHHCCCeEEEEeCCCCCHHHHH------hhccCCEEEEEChhhHH
Confidence 12477776665332223344 5588888887876654 67665421110 112344455444 2456
Q ss_pred HHHHHHHHHhC
Q 009804 374 WLSQKIKDHFA 384 (525)
Q Consensus 374 ~La~~Ik~~~~ 384 (525)
.+++.++++|+
T Consensus 218 ~~A~~Le~r~G 228 (525)
T 3aek_B 218 SAARHLERACK 228 (525)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHcC
Confidence 67777777665
No 183
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=21.26 E-value=1.1e+02 Score=28.17 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=51.9
Q ss_pred EEEEEcCC-CChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCCCcHHH
Q 009804 155 YACIVTCG-GLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSK 233 (525)
Q Consensus 155 ~iaIvtsG-G~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~~d~~~ 233 (525)
+|+|++.| -|-| +...+...|.. +|+. .++. +.+--|..+...+
T Consensus 4 ~V~Iimgs~SD~~----v~~~a~~~l~~-~gi~-----------------~ev~-------------V~saHR~p~~~~~ 48 (159)
T 3rg8_A 4 LVIILMGSSSDMG----HAEKIASELKT-FGIE-----------------YAIR-------------IGSAHKTAEHVVS 48 (159)
T ss_dssp EEEEEESSGGGHH----HHHHHHHHHHH-TTCE-----------------EEEE-------------ECCTTTCHHHHHH
T ss_pred eEEEEECcHHHHH----HHHHHHHHHHH-cCCC-----------------EEEE-------------EEcccCCHHHHHH
Confidence 67887743 4678 67777777754 6742 1100 4455577677888
Q ss_pred HHHHHHHc-CCCEEEEEcCC-cchHHHHHHHHHHHHcCCceeEEEeec
Q 009804 234 IVDSIQDR-GINQVYIIGGD-GTQKGASVIYEEVRRRGLKVVVAGIPK 279 (525)
Q Consensus 234 iv~~l~~~-~Id~L~vIGGd-gS~~~A~~L~e~~~~~g~~i~VIgIPK 279 (525)
++++.++. +++.+|.+-|- +.+-+. ++- ....+|||||-
T Consensus 49 ~~~~a~~~~~~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~ 89 (159)
T 3rg8_A 49 MLKEYEALDRPKLYITIAGRSNALSGF--VDG-----FVKGATIACPP 89 (159)
T ss_dssp HHHHHHTSCSCEEEEEECCSSCCHHHH--HHH-----HSSSCEEECCC
T ss_pred HHHHhhhcCCCcEEEEECCchhhhHHH--HHh-----ccCCCEEEeeC
Confidence 88888875 68888877554 444433 222 23578999994
No 184
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.23 E-value=1.6e+02 Score=28.65 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeecccc-CCCC--CCc--hhhHHHHHHhhhcCC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTID-NDIP--VPL--LTWFIAMYATLASRD 304 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTID-NDI~--gtD--~sG~IAl~aaLAs~~ 304 (525)
...++++.|...++|++++.+-+...... +.+.+.+++ ||.+=...+ .+++ .+| .+|++|+.--+..|+
T Consensus 116 ~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~iP--vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~ 189 (366)
T 3h5t_A 116 DHVSAQQLVNNAAVDGVVIYSVAKGDPHI----DAIRARGLP--AVIADQPAREEGMPFIAPNNRKAIAPAAQALIDAGH 189 (366)
T ss_dssp CHHHHHHHHHTCCCSCEEEESCCTTCHHH----HHHHHHTCC--EEEESSCCSCTTCCEEEECHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCChHHH----HHHHHCCCC--EEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCC
Confidence 46778899999999999999865443322 334445754 554422221 1122 233 788888876666655
Q ss_pred ccEEEcC
Q 009804 305 VDCCLIP 311 (525)
Q Consensus 305 ad~iLIP 311 (525)
-.+.+|-
T Consensus 190 r~I~~i~ 196 (366)
T 3h5t_A 190 RKIGILS 196 (366)
T ss_dssp CSEEEEE
T ss_pred CcEEEEe
Confidence 5665553
No 185
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=21.20 E-value=3.2e+02 Score=25.52 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL 289 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD 289 (525)
.++++.++.++++|++++=+.+.+- ...+..+.+.++++|+.+..++.| .++++...|
T Consensus 38 ~~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gl~v~~~~~~--~~~~l~~~d 95 (287)
T 3kws_A 38 ESLNEKLDFMEKLGVVGFEPGGGGL-AGRVNEIKQALNGRNIKVSAICAG--FKGFILSTD 95 (287)
T ss_dssp SSHHHHHHHHHHTTCCEEECBSTTC-GGGHHHHHHHHTTSSCEECEEECC--CCSCTTBSS
T ss_pred CCHHHHHHHHHHcCCCEEEecCCch-HHHHHHHHHHHHHcCCeEEEEecC--CCCcCCCCC
Confidence 4789999999999999998777632 344677778888889887666654 344444444
No 186
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=20.84 E-value=80 Score=29.01 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=8.3
Q ss_pred CceeEEEeec
Q 009804 270 LKVVVAGIPK 279 (525)
Q Consensus 270 ~~i~VIgIPK 279 (525)
...+|||||-
T Consensus 73 t~~PVIgVP~ 82 (157)
T 2ywx_A 73 TTKPVIAVPV 82 (157)
T ss_dssp CSSCEEEEEE
T ss_pred cCCCEEEecC
Confidence 4578999997
No 187
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=20.82 E-value=4.7e+02 Score=25.87 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcch-----HHHHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQ-----KGASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~-----~~A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+++.++.+.+.|+++|++.|..|-. .-=.++.+...+. +-+++|| ..|-.|+.. .+=-+|-++.=+ +
T Consensus 47 l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGvg~~~t~---~ai~la~~A~~~--G 119 (315)
T 3na8_A 47 LGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTI--VSVSDLTTA---KTVRRAQFAESL--G 119 (315)
T ss_dssp HHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EECCCSSHH---HHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EecCCCCHH---HHHHHHHHHHhc--C
Confidence 6788888889999999999976643 2223344444332 2234443 356666543 444444444322 5
Q ss_pred ccEEE-cCCCCCCccchhhHHHHHHHHHHcCCcEEEE
Q 009804 305 VDCCL-IPESPFYLEGHGGLFEYIETRLKENGHMVIV 340 (525)
Q Consensus 305 ad~iL-IPE~pf~leg~~~lle~I~~rl~~~g~~VIV 340 (525)
+|.++ +|-.-+... +++++++.++..+.-+--|++
T Consensus 120 adavlv~~P~y~~~s-~~~l~~~f~~va~a~~lPiil 155 (315)
T 3na8_A 120 AEAVMVLPISYWKLN-EAEVFQHYRAVGEAIGVPVML 155 (315)
T ss_dssp CSEEEECCCCSSCCC-HHHHHHHHHHHHHHCSSCEEE
T ss_pred CCEEEECCCCCCCCC-HHHHHHHHHHHHHhCCCcEEE
Confidence 77544 343333332 567888877666554444554
No 188
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=20.57 E-value=5.9e+02 Score=24.73 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=44.1
Q ss_pred HHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCCccEEEcCCC
Q 009804 235 VDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPES 313 (525)
Q Consensus 235 v~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ad~iLIPE~ 313 (525)
+....+.+.+.|+..|+-.+..+. .++-.+++.|+++ +|.+|.+....-..-...|-+.+.-++ +++++++|..
T Consensus 59 l~~a~~~g~~~vv~~GassGN~g~-alA~~a~~~G~~~-~iv~p~~~~~~~~~~~~~~k~~~~~~~---GA~V~~~~~~ 132 (338)
T 1tzj_A 59 IPEALAQGCDTLVSIGGIQSNQTR-QVAAVAAHLGMKC-VLVQENWVNYSDAVYDRVGNIQMSRIL---GADVRLVPDG 132 (338)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHH-HHHHHHHHHTCEE-EEEEECCSSCCCTTTTTSHHHHHHHHT---TCEEEECCC-
T ss_pred HHHHHHcCCCEEEEcCCchhHHHH-HHHHHHHHhCCce-EEEecCCCCccccccccCccHHHHHhC---CCEEEEeCCc
Confidence 444556788888877654444442 3555667789985 556898874321101134666665554 6888887754
No 189
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=20.52 E-value=5.4e+02 Score=24.27 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccC-CCC--CCc--hhhHHHHH-HhhhcC
Q 009804 230 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDN-DIP--VPL--LTWFIAMY-ATLASR 303 (525)
Q Consensus 230 d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDN-DI~--gtD--~sG~IAl~-aaLAs~ 303 (525)
+.++.++.|.+.++|++|++|.. +..+ +.+. .+..-++++|.|=...+. ++. .+| .++|+|.+ ++...+
T Consensus 51 ~~~~~l~~l~~~~vdgIi~~~~~--~~~~--~~~~-~~~~p~~p~v~id~~~~~~~~~~v~~d~~~g~~lag~la~~l~~ 125 (296)
T 2hqb_A 51 KAHRRIKELVDGGVNLIFGHGHA--FAEY--FSTI-HNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASMSE 125 (296)
T ss_dssp HHHHHHHHHHHTTCCEEEECSTH--HHHH--HHTT-TTSCTTSEEEEESCCCCSSSEEEEEECCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHCCCCEEEEcCHh--HHHH--HHHH-HHHCCCCEEEEEecCcCCCCEEEEEechHHHHHHHHHHHHhhcc
Confidence 45678889999999999998643 2222 2221 121113566655222221 121 123 78888865 223222
Q ss_pred CccEEEc
Q 009804 304 DVDCCLI 310 (525)
Q Consensus 304 ~ad~iLI 310 (525)
.-.+.+|
T Consensus 126 ~~~Ig~i 132 (296)
T 2hqb_A 126 THKVGVI 132 (296)
T ss_dssp SSEEEEE
T ss_pred CCeEEEE
Confidence 3445555
No 190
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=20.35 E-value=75 Score=28.19 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHHHcCCceeEEEeeccccCCC
Q 009804 261 IYEEVRRRGLKVVVAGIPKTIDNDI 285 (525)
Q Consensus 261 L~e~~~~~g~~i~VIgIPKTIDNDI 285 (525)
|.+.+++++...-|||+|++.|+..
T Consensus 45 l~~li~e~~v~~iVvGlP~~mdGt~ 69 (138)
T 1nu0_A 45 IERLLKEWQPDEIIVGLPLNMDGTE 69 (138)
T ss_dssp HHHHHHHHCCSEEEEEEEECTTSCB
T ss_pred HHHHHHHcCCCEEEEecccCCCcCc
Confidence 3333444455566999999999854
No 191
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=20.17 E-value=6.5e+02 Score=25.02 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCcchHH-----HHHHHHHHHHc-CCceeEEEeeccccCCCCCCchhhHHHHHHhhhcCC
Q 009804 231 TSKIVDSIQDRGINQVYIIGGDGTQKG-----ASVIYEEVRRR-GLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRD 304 (525)
Q Consensus 231 ~~~iv~~l~~~~Id~L~vIGGdgS~~~-----A~~L~e~~~~~-g~~i~VIgIPKTIDNDI~gtD~sG~IAl~aaLAs~~ 304 (525)
+++.++.+.+.|+++|++.|..|-... =.++.+...+. +-+++|| ..|-.|+.. .+=-+|-++.-+ +
T Consensus 57 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi--aGvg~~st~---eai~la~~A~~~--G 129 (332)
T 2r8w_A 57 FSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLM--AGIGALRTD---EAVALAKDAEAA--G 129 (332)
T ss_dssp HHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEECCSSHH---HHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EecCCCCHH---HHHHHHHHHHhc--C
Confidence 678888888899999999997664422 12233333322 2234444 456666543 444455444432 5
Q ss_pred ccEEEc-CCCCCCccchhhHHHHHHHHHHcCCcEEEE
Q 009804 305 VDCCLI-PESPFYLEGHGGLFEYIETRLKENGHMVIV 340 (525)
Q Consensus 305 ad~iLI-PE~pf~leg~~~lle~I~~rl~~~g~~VIV 340 (525)
+|.+++ |-.-+.. .+.+++++.++..+.-+--||+
T Consensus 130 adavlv~~P~Y~~~-s~~~l~~~f~~VA~a~~lPiil 165 (332)
T 2r8w_A 130 ADALLLAPVSYTPL-TQEEAYHHFAAVAGATALPLAI 165 (332)
T ss_dssp CSEEEECCCCSSCC-CHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCEEEECCCCCCCC-CHHHHHHHHHHHHHhcCCCEEE
Confidence 775544 4332222 2567888877665543444554
No 192
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=20.12 E-value=90 Score=30.02 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCc---eeEEEe
Q 009804 229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLK---VVVAGI 277 (525)
Q Consensus 229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~---i~VIgI 277 (525)
.++...++.+++.+.+++|+.+.+.. +..+.+.+++.|+. +++++.
T Consensus 181 ~d~~~~~~~l~~~~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~v~~~~~ 229 (368)
T 4eyg_A 181 PDFAPFLQRMKDAKPDAMFVFVPAGQ---GGNFMKQFAERGLDKSGIKVIGP 229 (368)
T ss_dssp CCCHHHHHHHHHHCCSEEEEECCTTC---HHHHHHHHHHTTGGGTTCEEEEE
T ss_pred CcHHHHHHHHHhcCCCEEEEeccchH---HHHHHHHHHHcCCCcCCceEEec
Confidence 46778888899999999999776652 33444666777887 667765
Done!