BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009805
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 56/298 (18%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
+N K ++PLH AA+ G V K L++ K AK +++ T LH A
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLLQ------NKAKVNAKA---------KDDQTPLHCA 87
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA------- 186
+ G+ + VK+L+E N P A G TPL++AA G + V +LEK +S
Sbjct: 88 ARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 187 -----------------------AHD---GPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
AH G NG T LH AV+ D+V KLL +
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSP 205
Query: 221 RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT 280
G+TPLH +A ++ LL++ GS+ + + +T L +AA +GH +
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVAL 263
Query: 281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
+++ +L + G LH + H L+K + +D MG TPLH+
Sbjct: 264 LLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHV 317
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 33/318 (10%)
Query: 77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
KG +PLH AAK G+ V ++L+E A K GLT LH AV
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---------GLT------PLHVAVHH 189
Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTA 196
NLD VK+L+ G P+S NG TPL++AA + ++ +L+ SA + G T
Sbjct: 190 NNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248
Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALI 256
LH A A++V LL+K+ + + G TPLH A G + +L++ ++
Sbjct: 249 LHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----GVM 303
Query: 257 LDKDRKM--TALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKR 314
+D +M T L +A+ G+ L ++ H + + G++ LH H +
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 315 LLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIEL 374
LLK+ + +E + G TPL I L + ++++ + T + +S KH
Sbjct: 363 LLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV----TDETSFVLVSDKHRMS 415
Query: 375 YGCPELQGEIQGLSENIG 392
+ PE EI +SE+ G
Sbjct: 416 F--PETVDEILDVSEDEG 431
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A G+L VK L++ G + P +NV ETPL+MAA G ++ +L+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
+ +T LH A ++V KLL + G TPLH +A G + LL
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 248 EFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH--YPECYDLVDNGGWNVLHFLMV 305
E + S A + K T L +AA G +A ++ +P G N L L V
Sbjct: 134 EKEASQACMTKKG--FTPLHVAAKYGKVRVAELLLERDAHPNA------AGKNGLTPLHV 185
Query: 306 SLHESKLKRLLKDPLYKSFIDEKNEM-GNTPLHILA 340
++H + L ++K L + G TPLHI A
Sbjct: 186 AVHHNNLD-IVKLLLPRGGSPHSPAWNGYTPLHIAA 220
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
EA + GN D VK L+E G + P +++ +G TPL+ AA G K++V +L K +
Sbjct: 10 EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
+G+T LH A + ++V KLL K +D G TPLH++A G K+I LLL G
Sbjct: 69 DGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK-G 126
Query: 252 SSALILDKDRKMTALLMAASQGHESL 277
+ D D + T L +A G+E +
Sbjct: 127 ADPNTSDSDGR-TPLDLAREHGNEEI 151
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
+++ G +PLH AA+ G +VK+L+ P A +T LH A
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGA-DPNAKDSDGRTP--------------LHYA 77
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
+ G+ + VK+L+ G + P + + +G TPL+ AA G K++V +L K + +G
Sbjct: 78 AENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 194 KTALHAAVNSYAADVVEKLLAKK 216
+T L A ++V KLL K+
Sbjct: 137 RTPLDLAREHGNEEIV-KLLEKQ 158
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
EA + GN D VK L+E G + S + +G TPL+ AA G K++V ++ K +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
+G+T LH A + +VV KLL K +D G TPLHH+A G K++ LL+ G
Sbjct: 69 DGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-G 126
Query: 252 SSALILDKDRKMTALLMAASQGHESL 277
+ D D + T L +A G+E +
Sbjct: 127 ADVNTSDSDGR-TPLDLAREHGNEEV 151
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
+++ G +PLH AA+ G VVK+LI AK + + T LH A
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLI------SKGADVNAKDS---------DGRTPLHHA 77
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
+ G+ + VK+L+ G + + + +G TPL+ AA G K++V ++ K + +G
Sbjct: 78 AENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 194 KTALHAAVNSYAADVVEKLLAKK 216
+T L A +VV KLL K+
Sbjct: 137 RTPLDLAREHGNEEVV-KLLEKQ 158
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + GN D VK L+E G + S + +G TPL+ AA G K++V ++ K +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+G+T LH A ++V KLL K +D G TPLH++A G K+I LL+
Sbjct: 67 DSDGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 250 DGSSALILDKDRKMTALLMAASQGHESL 277
G+ D D + T L +A G+E +
Sbjct: 126 -GADVNTSDSDGR-TPLDLAREHGNEEI 151
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
+++ G +PLH AAK G +VK+LI AK + + T LH A
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLI------SKGADVNAKDS---------DGRTPLHYA 77
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
+ G+ + VK+L+ G + + + +G TPL+ AA G K++V ++ K + +G
Sbjct: 78 AKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 194 KTALHAAVNSYAADVVEKLLAKK 216
+T L A ++V KLL K+
Sbjct: 137 RTPLDLAREHGNEEIV-KLLEKQ 158
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A + G+L+ VK+L+EAG + + + NG TPL++AA G ++V +LE +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
NG+T LH A + +VV KLL + +D G TPLH +A G ++ LLL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 248 E 248
E
Sbjct: 122 E 122
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 16/136 (11%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA+ G VVK+L+E A + ++ T LH A + G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE---------------AGADVNAKDKNGRTPLHLAARNG 46
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ VK+L+EAG + + + NG TPL++AA G ++V +LE + NG+T L
Sbjct: 47 HLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105
Query: 198 HAAVNSYAADVVEKLL 213
H A + +VV+ LL
Sbjct: 106 HLAARNGHLEVVKLLL 121
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
NG TPL++AA G ++V +LE + NG+T LH A + +VV KLL +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGA 59
Query: 219 LTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGH 274
+D G TPLH +A G ++ LLLE G+ DK+ + T L +AA GH
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGR-TPLHLAARNGH 113
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 64 LEICPSLL---IQTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
LE+ LL NAK G +PLH AA+ G VVK+L+E A
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---------------AGA 92
Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAG 149
+ ++ T LH A + G+L+ VK+L+EAG
Sbjct: 93 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 227 GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYP 286
G TPLH +A G ++ LLLE G+ DK+ + T L +AA GH + ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 287 ECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
+ + D G LH + H +K LL+ + ++ K++ G TPLH+ A
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAA 109
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
EA + GN D VK L+E G + +++ +G+TPL++AA G K++V +L + +
Sbjct: 10 EAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
+GKT LH A + +VV KLL + +D G TPLH +A G K++ LLL G
Sbjct: 69 DGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL-SQG 126
Query: 252 SSALILDKDRKMTALLMAASQGHESL 277
+ D D + T L +A G+E +
Sbjct: 127 ADPNTSDSDGR-TPLDLAREHGNEEV 151
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
+++ G +PLH AA+ G VVK+L+ P A K T LH A
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGK--------------TPLHLA 77
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
+ G+ + VK+L+ G + P + + +G+TPL++AA G K++V +L + + +G
Sbjct: 78 AENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 194 KTALHAAVNSYAADVVEKLLAKK 216
+T L A +VV KLL K+
Sbjct: 137 RTPLDLAREHGNEEVV-KLLEKQ 158
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A + G+ + VK+L+ G + P + + +G+TPL++AA G K++V +L + +
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
+GKT LH A + +VV KLL + D G TPL + G +++ LL
Sbjct: 98 AKDSDGKTPLHLAAENGHKEVV-KLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA G D V+ILM G + + + NG TPL++AAA G ++V +L+ +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL-- 247
G T LH A ++VE LL K D GWTPLH +A G +I +LL
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 248 --EFDGSSALILDKDRKMTALLMAASQGHESLA 278
+ + AL +TA ++ +QG E LA
Sbjct: 128 GADVNAQDAL------GLTAFDISINQGQEDLA 154
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+ G +PLH AA G+ +V+VL++ A G+ T LH A
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLLK---------NGADVNASDSAGI------TPLHLA 79
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
G+L+ V++L++ G + + + G TPL++AA G ++V +L+ + G
Sbjct: 80 AYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
Query: 194 KTALHAAVNSYAADVVEKL 212
TA ++N D+ E L
Sbjct: 139 LTAFDISINQGQEDLAEIL 157
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + S +V G TPL++AA G ++V +L+ + D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
G T LH A + +VVE LL K D G+TPLH +A +G +I +LL+
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 85 AAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKI 144
AA+ G+ V++L+ + W T LH A G+L+ V++
Sbjct: 21 AARAGQDDEVRILM----ANGADVNASDHVGW-----------TPLHLAAYFGHLEIVEV 65
Query: 145 LMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY 204
L++ G + ++ G TPL++AA RG ++V +L+ + + NG T LH A N
Sbjct: 66 LLKNGADVNADDSL-GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIG 124
Query: 205 AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
++VE LL K +D G T S G +D+ +L
Sbjct: 125 HLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL++ A LG+ T LH A G
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK---------NGADVNADDSLGV------TPLHLAADRG 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ V++L++ G + + + NG TPL++AA G ++V +L+ + GKTA
Sbjct: 92 HLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 198 HAAVNSYAADVVEKL 212
++++ D+ E L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 64 LEICPSLL---IQTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
LEI LL NA G +PLH AA G VV+VL+ K + +
Sbjct: 60 LEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLL----KNGADVNANDHNGF- 114
Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
T LH A G+L+ V++L++ G + G+T ++ G++ + A
Sbjct: 115 ----------TPLHLAANIGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDL-A 162
Query: 178 EILEKCS 184
EIL+K +
Sbjct: 163 EILQKLN 169
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + +A+V G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
G T LH A + ++VE LL K +DD G TPLH +A G +I +LL++
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLL-KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ + G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISINNGNEDLA 162
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL++ A+ LG +T LH A G
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLK---------NGADVNAYDTLG------STPLHLAAHFG 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ V++L++ G + + + NG TPL++AA RG ++V +L+ + GKTA
Sbjct: 92 HLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 198 HAAVNSYAADVVEKL 212
++N+ D+ E L
Sbjct: 151 DISINNGNEDLAEIL 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 85 AAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKI 144
AA+ GR V++L+ + W T LH A G+L+ V++
Sbjct: 21 AARAGRDDEVRILM----ANGADVNAADVVGW-----------TPLHLAAYWGHLEIVEV 65
Query: 145 LMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY 204
L++ G + + + G TPL++AA G ++V +L+ + NG T LH A N
Sbjct: 66 LLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRG 124
Query: 205 AADVVEKLL 213
++VE LL
Sbjct: 125 HLEIVEVLL 133
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 27/112 (24%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL++ AK ++ T LH A G
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLK------NGADVNAK---------DDNGITPLHLAANRG 124
Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCS 184
+L+ V++L++ Y A+VN G+T ++ G++ + AEIL+K +
Sbjct: 125 HLEIVEVLLK------YGADVNAQDKFGKTAFDISINNGNEDL-AEILQKLN 169
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + G TPL++AA G ++V E+L K + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIV-EVLLKYGADVNA 75
Query: 190 GPN-GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
N G T LH A ++ ++VE LL K +D G+TPLH +AY G +I +LL+
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLL-KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 249 FDGSSALILDKDRKMTALLMAASQGHESLA 278
+ G+ DK K TA ++ G+E LA
Sbjct: 135 Y-GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+ G +PLH AAK G +V+VL+++ AW G T LH A
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLKYG---------ADVNAWDNYGA------TPLHLA 87
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
G+L+ V++L++ G + + + G TPL++AA G ++V +L+ + G
Sbjct: 88 ADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 KTALHAAVNSYAADVVEKL 212
KTA ++++ D+ E L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + +G TPL++AA G ++V +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+G T LH A ++VE LL K +D G+TPLH +A G +I +LL+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K T +A +GHE +A
Sbjct: 124 -GADVNAQDKFGK-TPFDLAIREGHEDIA 150
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 19/143 (13%)
Query: 73 QTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
NAK G +PLH AA+ G +V+VL++ A + +++ T
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLK---------------AGADVNAKDKDGYTP 71
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
LH A + G+L+ V++L++AG + + + +G TPL++AA G ++V +L+ +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
GKT A+ D+ E L
Sbjct: 131 DKFGKTPFDLAIREGHEDIAEVL 153
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + G TPL+MAAA G ++V +L +
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
NG T LH A + ++VE LL K +D G TPL+ +AY G +I +LL+
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 124 -GADVNAQDKFGK-TAFDISIDIGNEDLA 150
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL+ + + T LH A G
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGAD---------------VNAVDTNGTTPLHLAASLG 79
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ V++L++ G + + + G TPLY+AA G ++V +L+ + GKTA
Sbjct: 80 HLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Query: 198 HAAVNSYAADVVEKL 212
+++ D+ E L
Sbjct: 139 DISIDIGNEDLAEIL 153
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 27/126 (21%)
Query: 64 LEICPSLL--------IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA 115
LEI LL + TN G +PLH AA G +V+VL+++ AK A
Sbjct: 48 LEIVEVLLRNGADVNAVDTN--GTTPLHLAASLGHLEIVEVLLKYGA------DVNAKDA 99
Query: 116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKM 175
+ T L+ A G+L+ V++L++ G + + + G+T ++ G++ +
Sbjct: 100 TGI---------TPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGNEDL 149
Query: 176 VAEILE 181
AEIL+
Sbjct: 150 -AEILQ 154
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+ G SPLH AA GR ++ +L++ G N ++ LH A
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANA---------------GARNADQAVPLHLA 126
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
Q G+ VK L+++ P +++G TPL A + G ++VA +L+ +S G
Sbjct: 127 CQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 194 KTALHAAVNSYAADVVEKLL 213
TALH AV VVE LL
Sbjct: 186 NTALHEAVIEKHVFVVELLL 205
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + +G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+G T LH A ++VE LL K +D G+TPLH +A G +I +LL+
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 19/143 (13%)
Query: 73 QTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
NAK G +PLH AA+ G +V+VL+ K + K + T
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLL----KAGADVNAKDKDGY-----------TP 83
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
LH A + G+L+ V++L++AG + + + +G TPL++AA G ++V +L+ +
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 26/141 (18%)
Query: 77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
+G +PLH AA G P +V+VL+ K + W T LH A
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLL----KHGADVNARDTDGW-----------TPLHLAADN 90
Query: 137 GNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
G+L+ V++L++ Y A+VN G TPL++AA RG ++V +L+ +
Sbjct: 91 GHLEIVEVLLK------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Query: 192 NGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+G T LH A ++ ++VE LL K +D G TPLH +A G +I +LL+
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + G+TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+G T LH A ++VE LL + + D G TPLH +A G +I +LL++
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 26/140 (18%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
GD+PLH AA+ G +V+VL++ A G +T LH A + G
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLK---------NGADVNALDFSG------STPLHLAAKRG 91
Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
+L+ V++L++ Y A+VN G TPL++AA G ++V +L+ +
Sbjct: 92 HLEIVEVLLK------YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF 145
Query: 193 GKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
+T LH A + G+L+ V++L++ G + + + +G TPL++AA RG ++V +L+ +
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
D G T LH A ++ ++VE LL K +D G T S G +D+ +L
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + +G TPL++AA G ++V +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+G T LH A ++VE LL K +D G+TPLH +A G +I +LL+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K T +A G+E +A
Sbjct: 124 -GADVNAQDKFGK-TPFDLAIDNGNEDIA 150
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 19/143 (13%)
Query: 73 QTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
NAK G +PLH AA+ G +V+VL+ K + K + T
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLL----KAGADVNAKDKDGY-----------TP 71
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
LH A + G+L+ V++L++AG + + + +G TPL++AA G ++V +L+ +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
GKT A+++ D+ E L
Sbjct: 131 DKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 60 VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML 119
V+++L PSLL+Q + G PLH + + F + T+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWS------------VSFQAHEITSFLLSKMENVNLD 65
Query: 120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKK 174
++ T H A GNL+ VK L + P ++N G T L++A + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
+ ++E +S + LH A + + ++E L + +D GWTPL H+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 235 AYLGLKDITALLLEFDGSSALILD 258
G D LL+E G+ ++D
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---- 182
N LH+A V+ L+ + P+ + +G PL+ + + + ++ + +L K
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 183 -----------------CS-------SAAHDGP----------NGKTALHAAVNSYAADV 208
CS + +D P G T LH AV +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
V + L + R +D PLH +A +G + LL G SA+ + T L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQGWTPLFH 180
Query: 269 AASQGHESLAGTIIAHYPECYDLVDNGG 296
A ++GH A ++ Y YDLVDN G
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL-EFDGSSAL 255
LH A V++LL K L ++D G PLH S +IT+ LL + + +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 256 ILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL--VDNGGWNVLHFLMVSLHESKLK 313
D T +A S G+ + ++ P DL + N G LH L V ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLH-LAVGKKWFEVS 123
Query: 314 RLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKK 365
+ L + + + K++ PLH A++ + E++ +GK +K+
Sbjct: 124 QFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 60 VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML 119
V+++L PSLL+Q + G PLH + + F + T+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWS------------VSFQAHEITSFLLSKMENVNLD 65
Query: 120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKK 174
++ T H A GNL+ VK L + P ++N G T L++A + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
+ ++E +S + LH A + + ++E L + +D GWTPL H+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 235 AYLGLKDITALLLEFDGSSALILD 258
G D LL+E G+ ++D
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---- 182
N LH+A V+ L+ + P+ + +G PL+ + + + ++ + +L K
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 183 -----------------CS-------SAAHDGP----------NGKTALHAAVNSYAADV 208
CS + +D P G T LH AV +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
V + L + R +D PLH +A +G + LL G SA+ + T L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQGWTPLFH 180
Query: 269 AASQGHESLAGTIIAHYPECYDLVDNGG 296
A ++GH A ++ Y YDLVDN G
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL-EFDGSSAL 255
LH A V++LL K L ++D G PLH S +IT+ LL + + +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 256 ILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL--VDNGGWNVLHFLMVSLHESKLK 313
D T +A S G+ + ++ P DL + N G LH L V ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLH-LAVGKKWFEVS 123
Query: 314 RLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKK 365
+ L + + + K++ PLH A++ + E++ +GK +K+
Sbjct: 124 QFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 60 VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML 119
V+++L PSLL+Q + G PLH + + F + T+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWS------------VSFQAHEITSFLLSKMENVNLD 65
Query: 120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKK 174
++ T H A GNL+ VK L + P ++N G T L++A + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
+ ++E +S + LH A + + ++E L + +D GWTPL H+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 235 AYLGLKDITALLLEFDGSSALILD 258
G D LL+E G+ ++D
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---- 182
N LH+A V+ L+ + P+ + +G PL+ + + + ++ + +L K
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 183 -----------------CS-------SAAHDGP----------NGKTALHAAVNSYAADV 208
CS + +D P G T LH AV +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
V + L + R +D PLH +A +G + LL G SA+ + T L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQGWTPLFH 180
Query: 269 AASQGHESLAGTIIAHYPECYDLVDNGG 296
A ++GH A ++ Y YDLVDN G
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL-EFDGSSALILDKDRKMTALL 267
V++LL K L ++D G PLH S +IT+ LL + + + D T
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 268 MAASQGHESLAGTIIAHYPECYDL--VDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFI 325
+A S G+ + ++ P DL + N G LH L V ++ + L + + +
Sbjct: 78 IACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLH-LAVGKKWFEVSQFLIEN--GASV 133
Query: 326 DEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKK 365
K++ PLH A++ + E++ +GK +K+
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A + G+L+ VK+L+EAG + + + NG TPL++AA G ++V +LE +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLL 213
NG+T LH A + +VV+ LL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA+ G VVK+L+E A + ++ T LH A + G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE---------------AGADVNAKDKNGRTPLHLAARNG 46
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
+L+ VK+L+EAG + + + NG TPL++AA G ++V +LE
Sbjct: 47 HLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
NG TPL++AA G ++V +LE + NG+T LH A + +VV KLL +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGA 59
Query: 219 LTRERDDCGWTPLHHSAYLGLKDITALLLE 248
+D G TPLH +A G ++ LLLE
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 64 LEICPSLL---IQTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
LE+ LL NAK G +PLH AA+ G VVK+L+E A
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---------------AGA 59
Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAG 149
+ ++ T LH A + G+L+ VK+L+EAG
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + N G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
G T LH A ++VE LL K D G TPLH +A G +I +LL+
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL++ + + G T LH A G
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDAS---------DVFGY------TPLHLAAYWG 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ V++L++ G + + + +G TPL++AA G ++V +L+ + GKTA
Sbjct: 92 HLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 198 HAAVNSYAADVVEKL 212
++++ D+ E L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A G+L+ V++L++ G + S +V G TPL++AA G ++V +L+ +
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLL 213
+G T LH A ++VE LL
Sbjct: 108 AMDSDGMTPLHLAAKWGYLEIVEVLL 133
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
G T LH A ++VE LL K D G+TPLH +A G +I +LL+
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK- 134
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
+G+ DK K TA ++ G+E LA
Sbjct: 135 NGADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL++ AK + LG+ T LH A + G
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLK------NGADVNAKDS---LGV------TPLHLAARRG 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ V++L++ G + S + +G TPL++AA RG ++V +L+ + GKTA
Sbjct: 92 HLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 198 HAAVNSYAADVVEKL 212
++++ D+ E L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 85 AAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKI 144
AA+ G+ V++L+ + T W T LH A G+L+ V++
Sbjct: 21 AARAGQDDEVRILM----ANGADVNARDFTGW-----------TPLHLAAHFGHLEIVEV 65
Query: 145 LMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY 204
L++ G + ++ G TPL++AA RG ++V +L+ + +G T LH A
Sbjct: 66 LLKNGADVNAKDSL-GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRG 124
Query: 205 AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
++VE LL K +D G T S G +D+ +L
Sbjct: 125 HLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 223 RDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDR-KMTALLMAASQGHESLAGTI 281
RD GWTPLH +A+ G +I +LL+ + A + KD +T L +AA +GH + +
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLK---NGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 282 IAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILAT 341
+ + + + D+ G+ LH H ++ LLK+ + ++ +++ G T I
Sbjct: 100 LKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISID 155
Query: 342 LSARTCNEIVRQI 354
EI++++
Sbjct: 156 NGNEDLAEILQKL 168
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 64 LEICPSLL---IQTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
LEI LL NAK G +PLH AA+ G +V+VL+ K + +
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL----KNGADVNASDSHGF- 114
Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
T LH A + G+L+ V++L++ G + G+T ++ G++ + A
Sbjct: 115 ----------TPLHLAAKRGHLEIVEVLLKNGADVNAQDKF-GKTAFDISIDNGNEDL-A 162
Query: 178 EILEKCS 184
EIL+K +
Sbjct: 163 EILQKLN 169
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 11/218 (5%)
Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
+ ++ + + LH A + G++D +L++AG N + + + TPL AA + V ++
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ + G T LH A +VV+ LL+ + +DD GWTP+ +
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 241 DITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL--VDNGGWN 298
D+ LLL GS I D + + L AA G +A ++A +C DL V+ G +
Sbjct: 125 DLVKLLLS-KGSDINIRDNEENI-CLHWAAFSGCVDIAEILLA--AKC-DLHAVNIHGDS 179
Query: 299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPL 336
LH ++ E++ ++ S + KN+ G TPL
Sbjct: 180 PLH---IAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNL 139
SPLHAAA+ G + +L++ T +E++ T L EA + +L
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTC---------------SEDQRTPLMEAAENNHL 57
Query: 140 DAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS---SAAHDGPNGKTA 196
+AVK L++AG + G T L++AA +G ++V +L + DG G T
Sbjct: 58 EAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG--GWTP 114
Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
+ A D+V+ LL+K + RD+ LH +A+ G DI +LL
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIAEILL 164
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 26/154 (16%)
Query: 69 SLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML--------- 119
+L+ +A+G + LH AAK G VV+ L+ + + C W +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD---VNCQDDGGWTPMIWATEYKHV 124
Query: 120 -------------GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYM 166
+ + EEN LH A G +D +IL+ A + ++ N++G++PL++
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHI 183
Query: 167 AAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA 200
AA V L + S G+T L A
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + +G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
G T LH A ++VE LL K D G TPLH +A +G +I +LL+
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 16/139 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+A G +PLH AA G +V+VL++ A + G +T LH A
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADV---------NAIDIXG------STPLHLA 87
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
G+L+ V++L++ G + + + G+TPL++AA G ++V +L+ + G
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 KTALHAAVNSYAADVVEKL 212
KTA ++++ D+ E L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 41/179 (22%)
Query: 50 KEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMK 109
+EG +V+ + L+ + L Q + G SPLH A + GR AVV++LI +
Sbjct: 9 REGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------ 59
Query: 110 CCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPL 164
+ + N ++T LH A G+ D V+ L++ Y A++N G PL
Sbjct: 60 ---------INVMNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPL 104
Query: 165 YMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRER 223
+ A G ++ +++ NG AL + N Y V+K A R L RER
Sbjct: 105 HYACFWGQDQVAEDLV----------ANG--ALVSICNKYGEMPVDKAKAPLRELLRER 151
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 39/114 (34%)
Query: 224 DDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIA 283
DD G++PLH + G + +L+ G+ ++++ T L +AAS GH +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD-TPLHLAASHGHRDI------ 82
Query: 284 HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLH 337
+++LL+ YK+ I+ NE GN PLH
Sbjct: 83 ----------------------------VQKLLQ---YKADINAVNEHGNVPLH 105
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 41/179 (22%)
Query: 50 KEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMK 109
+EG +V+ + L+ + L Q + G SPLH A + GR AVV++LI +
Sbjct: 14 REGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------ 64
Query: 110 CCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPL 164
+ + N ++T LH A G+ D V+ L++ Y A++N G PL
Sbjct: 65 ---------INVMNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPL 109
Query: 165 YMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRER 223
+ A G ++ +++ NG AL + N Y V+K A R L RER
Sbjct: 110 HYACFWGQDQVAEDLV----------ANG--ALVSICNKYGEMPVDKAKAPLRELLRER 156
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 39/114 (34%)
Query: 224 DDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIA 283
DD G++PLH + G + +L+ G+ ++++ T L +AAS GH +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD-TPLHLAASHGHRDI------ 87
Query: 284 HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLH 337
+++LL+ YK+ I+ NE GN PLH
Sbjct: 88 ----------------------------VQKLLQ---YKADINAVNEHGNVPLH 110
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+A G +PLH AA G +V+VL++ A ++G +T LH A
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADV---------NAIDIMG------STPLHLA 87
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
G+L+ V++L++ G + + + G+TPL++AA G ++V +L+ + G
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 KTALHAAVNSYAADVVEKL 212
KTA ++++ D+ E L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVN---GETPLYMAAARGSKKMVAEILEKCSSA 186
L EA + G D V+ILM G + N N G TPL++ G +++ +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGAD----VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
+G T LH A ++VE LL K D G+TPLH +A G +I +L
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLA 278
L++ G+ DK K TA ++ G+E LA
Sbjct: 133 LKY-GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 30/131 (22%)
Query: 62 QILEICPSLLIQTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
+I+E+ NA G +PLH AA G +V+VL+++ AM
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGY----- 114
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSK 173
T LH A + G+L+ V++L++ Y A+VN G+T ++ G++
Sbjct: 115 ---------TPLHLAAEDGHLEIVEVLLK------YGADVNAQDKFGKTAFDISIDNGNE 159
Query: 174 KMVAEILEKCS 184
+ AEIL+K +
Sbjct: 160 DL-AEILQKLN 169
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 263 MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYK 322
+T L + + GH + ++ Y + D GW LH H ++ LLK Y
Sbjct: 48 ITPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK---YG 103
Query: 323 SFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNK 364
+ ++ + G TPLH+ A E++ + G D A +K
Sbjct: 104 ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG-ADVNAQDK 144
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 19/230 (8%)
Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
E+N L +AVQ ++D V+ L+E G N + G TPL+ A + +V +L +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
NG T A + + +++ L+K + E D G+T +A G + A
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYG--KVKA 120
Query: 245 LLLEFDGSSALILDKDRK----------MTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
L + + + L + K TAL+ AA +GH + ++ + DN
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 295 GGWNVLHFLMVSLHESKLK---RLLKDPLYKSFIDEKNEMGNTPLHILAT 341
G N L ++S +S ++ LL D + + ++ + E G TPL ILA
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLD--HGADVNVRGERGKTPL-ILAV 227
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 109/271 (40%), Gaps = 42/271 (15%)
Query: 59 FVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
V+Q+LE ++ Q G +PLH A + R +V++L+ P K T + +
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKKNGATPFLL 78
Query: 119 LGL----------------TNEEE---NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN 159
+ NE + TA EA G + A+K L + G N
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138
Query: 160 ---------GETPLYMAAARGSKKMVAEILEKCSSAAHDGPN-GKTAL-HAAVNSYAADV 208
G T L AA +G +++ +L++ + + N G+ AL HA ++S +DV
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Query: 209 --VEKLLAKKRHLTRERDDCGWTPL---HHSAYLGLKDITALLLEFDGSSALILDKDRKM 263
+ LL R + G TPL +LGL LLE + D D K
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL---VQRLLEQEHIEINDTDSDGK- 254
Query: 264 TALLMAASQGHESLAGTIIAH--YPECYDLV 292
TALL+A + +A + +C DLV
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDCGDLV 285
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+IL+ G + N G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
G T LH A + ++VE LL K D G TPLH +A G +I +LL++
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL++ A + G T LH A G
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAA---------DVYGFT------PLHLAAMTG 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ V++L++ G + + ++ G TPL++AA G ++V +L+ + GKTA
Sbjct: 92 HLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 198 HAAVNSYAADV 208
++++ D+
Sbjct: 151 DISIDNGNEDL 161
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A G+L+ V++L++ G + +A+V G TPL++AA G ++V +L+ +
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLL 213
G T LH A + ++VE LL
Sbjct: 108 AFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 266 LLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFI 325
LL AA G + +IA+ + + VDN G LH VS H ++ LLK + + +
Sbjct: 18 LLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLK---HGADV 73
Query: 326 DEKNEMGNTPLHILATLSARTCNEIVRQIG 355
D + G TPLH+ A E++ + G
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 19/230 (8%)
Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
E+N L +AVQ ++D V+ L+E G N + G TPL+ A + +V +L +
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
NG T A + + +++ L+K + E D G+T +A G + A
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYG--KVKA 140
Query: 245 LLLEFDGSSALILDKDRK----------MTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
L + + + L + K TAL+ AA +GH + ++ + DN
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 295 GGWNVLHFLMVSLHESKLK---RLLKDPLYKSFIDEKNEMGNTPLHILAT 341
G N L ++S +S ++ LL D + + ++ + E G TPL ILA
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHLLLD--HGADVNVRGERGKTPL-ILAV 247
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 116/286 (40%), Gaps = 42/286 (14%)
Query: 59 FVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAW-- 116
V+Q+LE ++ Q G +PLH A + R +V++L+ P K T +
Sbjct: 40 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKKNGATPFIL 98
Query: 117 -------QMLGL-------TNEEE---NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN 159
++L L NE + TA EA G + A+K L + G N
Sbjct: 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 158
Query: 160 ---------GETPLYMAAARGSKKMVAEILEKCSSAAHDGPN-GKTAL-HAAVNSYAADV 208
G T L AA +G +++ +L++ + + N G+ AL HA ++S +DV
Sbjct: 159 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 218
Query: 209 --VEKLLAKKRHLTRERDDCGWTPL---HHSAYLGLKDITALLLEFDGSSALILDKDRKM 263
+ LL R + G TPL +LGL LLE + D D K
Sbjct: 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL---VQRLLEQEHIEINDTDSDGK- 274
Query: 264 TALLMAASQGHESLAGTIIAH--YPECYDLVDNGGWNVLHFLMVSL 307
TALL+A + +A + +C DLV N H L+ L
Sbjct: 275 TALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVL 320
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 73 QTNAKGDSPLHAAAKCGR-PAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
+ + GD+PLH A G PAV +++ F + + L + N T LH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLF------------QQGGRELDIYNNLRQTPLH 51
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD-- 189
AV V++L+ AG + P + + +G+T ++A S + +L+ + D
Sbjct: 52 LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110
Query: 190 --GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
+G TALH AVN+ + V+ LL + + G +PL H+ + LLL
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 248 E---------FDGSSAL 255
+ + GSSAL
Sbjct: 171 QHGANVNAQMYSGSSAL 187
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 24/144 (16%)
Query: 80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM--------------------- 118
+PLH A P+VV++L+ A P A+ +TA +
Sbjct: 48 TPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 119 --LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV 176
L N + TALH AV + V++L+E G + +G +PL A S MV
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 177 AEILEKCSSAAHDGPNGKTALHAA 200
+L+ ++ +G +ALH+A
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSA 190
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
IL S A + +TALH A ++ ++VE LL + ++DD GW+PLH +A G
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 84
Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII--AHYPECYDLVDNGG 296
+I LL G+ ++++ T L AAS+ +A ++ P+ D
Sbjct: 85 XDEIVKALL-VKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKD------ 136
Query: 297 WNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
H+ ++H + K LK YK+ + ++ GNTPLH+
Sbjct: 137 ----HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-GETPLYMAAARGSKKMVAEIL 180
T+++ TALH A G+ + V+ L++ G P + + G +PL++AA+ G ++V +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
K + NG T LH A + ++ LL + +D T +H +A G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNL 152
Query: 241 DITALLLEFDGSS 253
+ +LL + S+
Sbjct: 153 KMVHILLFYKAST 165
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 62 QILEICPSLLIQTNAKGD---SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
+I+E L + N K D SPLH AA G +VK L+
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL---------------VKGAH 98
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
+ N+ T LH A + +L+E G N P + + T ++ AAA+G+ KMV
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 179 ILEKCSSAAHDGPNGKTALHAAVN 202
+L +S G T LH A +
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACD 181
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
IL S A + +TALH A ++ ++VE LL + ++DD GW+PLH +A G
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 84
Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII--AHYPECYDLVDNGG 296
+I LL G+ ++++ T L AAS+ +A ++ P+ D
Sbjct: 85 RDEIVKALL-VKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKD------ 136
Query: 297 WNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
H+ ++H + K LK YK+ + ++ GNTPLH+
Sbjct: 137 ----HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 62 QILEICPSLLIQTNAKGD---SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
+I+E L + N K D SPLH AA GR +VK L+
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---------------VKGAH 98
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
+ N+ T LH A + +L+E G N P + + T ++ AAA+G+ KMV
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 179 ILEKCSSAAHDGPNGKTALHAAVN 202
+L +S G T LH A +
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACD 181
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-GETPLYMAAARGSKKMVAEIL 180
T+++ TALH A G+ + V+ L++ G P + + G +PL++AA+ G ++V +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
K + NG T LH A + ++ LL + +D T +H +A G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNL 152
Query: 241 DITALLLEFDGSS 253
+ +LL + S+
Sbjct: 153 KMVHILLFYKAST 165
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
IL S A + +TALH A ++ ++VE LL + ++DD GW+PLH +A G
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 84
Query: 239 LKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTII--AHYPECYDLVDNG 295
+I LL G A + ++ T L AAS+ +A ++ P+ D
Sbjct: 85 RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD----- 136
Query: 296 GWNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
H+ ++H + K LK YK+ + ++ GNTPLH+
Sbjct: 137 -----HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 62 QILEICPSLLIQTNAKGD---SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
+I+E L + N K D SPLH AA GR +VK L+ K A
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL-------------GKGA--Q 98
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
+ N+ T LH A + +L+E G N P + + T ++ AAA+G+ KM+
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHI 157
Query: 179 ILEKCSSAAHDGPNGKTALHAAVN 202
+L +S G T LH A +
Sbjct: 158 LLYYKASTNIQDTEGNTPLHLACD 181
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-GETPLYMAAARGSKKMVAEIL 180
T+++ TALH A G+ + V+ L++ G P + + G +PL++AA+ G ++V +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
K + NG T LH A + ++ LL + +D T +H +A G
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNL 152
Query: 241 DITALLLEFDGSS 253
+ +LL + S+
Sbjct: 153 KMIHILLYYKAST 165
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
IL S A + +TALH A ++ ++VE LL + ++DD GW+PLH +A G
Sbjct: 27 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 85
Query: 239 LKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTII--AHYPECYDLVDNG 295
+I LL G A + ++ T L AAS+ +A ++ P+ D
Sbjct: 86 RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD----- 137
Query: 296 GWNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
H+ ++H + K LK YK+ + ++ GNTPLH+
Sbjct: 138 -----HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 62 QILEICPSLLIQTNAKGD---SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
+I+E L + N K D SPLH AA GR +VK L+ K A
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL-------------GKGA--Q 99
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
+ N+ T LH A + +L+E G N P + + T ++ AAA+G+ KM+
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHI 158
Query: 179 ILEKCSSAAHDGPNGKTALHAAVN 202
+L +S G T LH A +
Sbjct: 159 LLYYKASTNIQDTEGNTPLHLACD 182
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-GETPLYMAAARGSKKMVAEIL 180
T+++ TALH A G+ + V+ L++ G P + + G +PL++AA+ G ++V +L
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
K + NG T LH A + ++ LL + +D T +H +A G
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNL 153
Query: 241 DITALLLEFDGSS 253
+ +LL + S+
Sbjct: 154 KMIHILLYYKAST 166
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYM----------------------A 167
LH A CG LD + L+ G + + N G+TPL + A
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 168 AARGSKKMVAEILEKCSSAAH-----DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRE 222
A + ++++ + ++ H +G TALH A +V+ KLL + R+
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNI 227
Query: 223 RDDCGWTPLHHSAYLGLKDITALLLE 248
+D GWTPLH +A+ G ++ +L+E
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 167 AAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDC 226
A + G + V +LE+ + + +G TALH A D+V K L + + D+
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMV-KFLVENGANINQPDNE 105
Query: 227 GWTPLHHSAYLGLKDITALLL 247
GW PLH +A G DI L+
Sbjct: 106 GWIPLHAAASCGYLDIAEYLI 126
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
TALH+A N+D VK L+E G N N G PL+ AA+ G +AE L S A
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLD-IAEYL--ISQGA 130
Query: 188 HDG 190
H G
Sbjct: 131 HVG 133
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
+E+ T LH A Q G+L+ V++L++ G + N G TPL++AA RG ++V +L+
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF-GITPLHLAAIRGHLEIVEVLLKH 102
Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKL 212
+ GKTA ++++ D+ E L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 37/149 (24%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + +G TPL++AA G ++V E+L K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIV-EVLLK------- 68
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
Y ADV D+ G TPLH +A G +I +LL+
Sbjct: 69 --------------YGADV------------NAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 103 -GADVNAQDKFGK-TAFDISIDNGNEDLA 129
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEEN---TALHEAV 134
G +PLH AA+ G +V+VL+++ N E+N T LH A
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGAD------------------VNAEDNFGITPLHLAA 88
Query: 135 QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
G+L+ V++L++ G + G+T ++ G++ + AEIL+K +
Sbjct: 89 IRGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDL-AEILQKLN 136
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL++ A K +T LH A G
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG---------------DTPLHLAALYG 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
+L+ V++L++ G + + + G TPL++AA G ++V +L+ + GKTA
Sbjct: 92 HLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 198 HAAVNSYAADVVEKL 212
++++ D+ E L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A G+L+ V++L++ G + +A+ G+TPL++AA G ++V +L+ +
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
G T LH A ++ ++VE LL K +D G T S G +D+ +L
Sbjct: 108 ATDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 33/132 (25%)
Query: 64 LEICPSLL---IQTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
LEI LL NA GD+PLH AA G +V+VL++ A +
Sbjct: 60 LEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK------NGADVNATDTYG 113
Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGS 172
T LH A G+L+ V++L++ Y A+VN G+T ++ G+
Sbjct: 114 F---------TPLHLAADAGHLEIVEVLLK------YGADVNAQDKFGKTAFDISIDNGN 158
Query: 173 KKMVAEILEKCS 184
+ + AEIL+K +
Sbjct: 159 EDL-AEILQKLN 169
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
GK L AA + D V L+A + E DD G TPLH +A G +I +LL+ G+
Sbjct: 15 GKKLLEAA-RAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKH-GA 71
Query: 253 SALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKL 312
DK T L +AA GH + ++ + + + D G+ LH + H +
Sbjct: 72 DVNAADK-MGDTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIV 129
Query: 313 KRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQI 354
+ LLK Y + ++ +++ G T I EI++++
Sbjct: 130 EVLLK---YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 37/145 (25%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G A+VN E
Sbjct: 18 LLEAARAGQDDEVRILMANG------ADVNAEDD-------------------------- 45
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+GKT LH A ++VE LL K D G TPLH +A G +I +LL+
Sbjct: 46 --SGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK- 101
Query: 250 DGSSALILDKDRKMTALLMAASQGH 274
+G+ D T L +AA GH
Sbjct: 102 NGADVNATDT-YGFTPLHLAADAGH 125
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 68 PSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAM---KCCAKTAW-------- 116
PSL+ + +G S +H AA+ G ++V LI AK Q M W
Sbjct: 102 PSLI---DGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 117 --QMLGLT---------NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLY 165
L LT +NTALH AV GN + +L+EAG N + N+ GE+ L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALD 215
Query: 166 MAAARGSKKMVAEILEKCSSAAHD 189
+A R + M+ + E + +D
Sbjct: 216 LAKQRKNVWMINHLQEARQAKGYD 239
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 3/161 (1%)
Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
++E T LH A +D VK + G TPL+ A +G MV ++++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK-D 241
+ + G + +H A +V L+AK + + D G TPL +AY D
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAYRTHSVD 157
Query: 242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII 282
T LLL F+ S L DK K TAL A G+ ++ ++
Sbjct: 158 PTRLLLTFNVSVNL-GDKYHKNTALHWAVLAGNTTVISLLL 197
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
Query: 179 ILEKCSSAAHDGPNGK-------TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPL 231
I E+C G + + T LH A + D+V+ ++K + + D TPL
Sbjct: 21 IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80
Query: 232 HHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL 291
H + G + L+++ +LI + + +AA GH S+ +IA + D+
Sbjct: 81 HWATRQGHLSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DM 137
Query: 292 VDNGGWNVLHFLMVSLHESKLKRLL 316
+D G L + H RLL
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLL 162
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 37/149 (24%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + G TPL++AA RG ++V E+L K
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLK------- 68
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+ ADV RD G TPLH +A +G +I +LLE+
Sbjct: 69 --------------HGADV------------NARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 103 -GADVNAQDKFGK-TAFDISIDNGNEDLA 129
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A + G+L+ V++L++ G + + ++ G TPL++AA G ++V +LE +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 188 HDGPNGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 27/112 (24%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AAK G +V+VL++ A+ W T LH A G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGA------DVNARDIWG---------RTPLHLAATVG 91
Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCS 184
+L+ V++L+E Y A+VN G+T ++ G++ + AEIL+K +
Sbjct: 92 HLEIVEVLLE------YGADVNAQDKFGKTAFDISIDNGNEDL-AEILQKLN 136
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
T+ + T LH A G+L+ V++L++ G + S ++ G TPL++AAA G ++V +L+
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLK 101
Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
+ +G T LH A ++VE LL K +D G T S G +D
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 ITALL 246
+ +L
Sbjct: 161 LAEIL 165
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
+G T LH A ++ ++VE LL K D G TPLH +A G +I +LL+ G
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH-G 103
Query: 252 SSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
+ D D T L +AA GH + ++ H
Sbjct: 104 ADVNAYDNDGH-TPLHLAAKYGHLEIVEVLLKH 135
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 224 DDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIA 283
D+ G+TPLH +A G +I +LL+ +G+ D +T L +AA+ GH + ++
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDL-TGITPLHLAAATGHLEIVEVLLK 101
Query: 284 HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLS 343
H + + DN G LH H ++ LLK + + ++ +++ G T I S
Sbjct: 102 HGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK---HGADVNAQDKFGKTAFDI----S 153
Query: 344 ARTCNEIVRQI 354
NE + +I
Sbjct: 154 IDNGNEDLAEI 164
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 23/137 (16%)
Query: 4 KLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKN-----KEGESVSTK 58
KL EAA G+ + + + T N+ +T LH+ + L+ K G V+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 59 FVEQI-----------LEICPSLL---IQTNA---KGDSPLHAAAKCGRPAVVKVLIEFA 101
+ I LEI LL NA G +PLH AAK G +V+VL++
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 102 KKQPTAMKCCAKTAWQM 118
A KTA+ +
Sbjct: 137 -ADVNAQDKFGKTAFDI 152
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + NG TPL++AA G ++V +LE +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
G +PLH AA+ G VVK+L+E A A KTA+ + + N E+ A
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFD-ISIDNGNEDLA 106
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
+T LH A + G+L+ VK+L+EAG + + + G+T ++ G++ + AEIL+
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGNEDL-AEILQ 110
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + NG TPL++AA G ++V +LE +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
G +PLH AA+ G VVK+L+E A A KTA+ +
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE-AGADVNAQDKFGKTAFDI 78
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
T LH A + G+L+ VK+L+EAG + G+T ++ G++ + AEIL+
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAGADVNAQDKF-GKTAFDISIDNGNEDL-AEILQ 92
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
+G N E + L EA + G+++ VK L TPL+ AA +V
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 62
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
+L+ + G LH A SY V +LL K + D +TPLH +A G
Sbjct: 63 LLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 239 LKDITALLLEF---------DGSSALILDKD 260
+I LLL+ DG++ L L KD
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
+ L N E + L EA + G+++ VK L TPL+ AA +V
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
+L+ + G LH A SY V +LL K + D +TPLH +A G
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 239 LKDITALLLEF---------DGSSALILDKD 260
+I LLL+ DG++ L L KD
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + G TPL++AA RG ++V +L+ +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLL 213
G+T LH A ++VE LL
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLL 100
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 27/112 (24%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AAK G +V+VL++ A +W T LH A G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGA------DVNASDSWG---------RTPLHLAATVG 91
Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCS 184
+L+ V++L+E Y A+VN G+T ++ G++ + AEIL+K +
Sbjct: 92 HLEIVEVLLE------YGADVNAQDKFGKTAFDISIDNGNEDL-AEILQKLN 136
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 35/261 (13%)
Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
LT E + L EA + GN + + L+ ++++ TPL++AA ++V +L
Sbjct: 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ + G LH A SY V +LL K D +TPLH +A
Sbjct: 79 QHGADVHAKDKGGLVPLHNAC-SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 241 DITALLLEFDGSSALI-------------------LDKDRKMTALLMAASQG-----HES 276
++ +LLL L+ L + K +LL AA + ++
Sbjct: 138 EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT 197
Query: 277 LAGTIIA-HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYK-SFIDEKNEMGNT 334
LA II P+ ++ LH + SLH K K++ + L K + ++EKN+ T
Sbjct: 198 LALEIINFKQPQSHE-------TALHCAVASLH-PKRKQVAELLLRKGANVNEKNKDFMT 249
Query: 335 PLHILATLSARTCNEIVRQIG 355
PLH+ A + E++ + G
Sbjct: 250 PLHVAAERAHNDVMEVLHKHG 270
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 13/187 (6%)
Query: 80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML-------GLTNEEENTALHE 132
+PLH AA R V +L+ PT + C K+A M LT E + +L +
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGA-DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184
Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAA--RGSKKMVAEIL-EKCSSAAHD 189
A + +L VK + A + + ET L+ A A +K VAE+L K ++
Sbjct: 185 AAREADLAKVKKTL-ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
+ T LH A DV+E +L K D G T LH +A G LLL +
Sbjct: 244 NKDFMTPLHVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Query: 250 DGSSALI 256
++I
Sbjct: 303 GSDPSII 309
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
+ PL+ AA RG+ + E L+ G TAL+ A + D+VE L +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 221 RERDDCGWTPLHHSAYLGLKDITALLL 247
+++ G T LH +A+ G DI LLL
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 124 EEENTALHEAVQCGNLDAVKILME--AGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
E + LHEA + GNL ++ ++ G N A G T LY A G K +V +
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA---GSTALYWACHGGHKDIVEXLFT 127
Query: 182 KCS-SAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
+ + G TALHAA AD+V+ LLAK
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 66 ICPSLLIQTNAKG-DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNE 124
+ PS + A+ D+PLH AAK G + ++ C + GL ++
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRG--------------NLSWLRECLDNRVGVNGL-DK 104
Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYS-ANVNGETPLYMAAARGSKKMVAEILEKC 183
+TAL+ A G+ D V+ L PN + N G+T L+ AA +G +V +L K
Sbjct: 105 AGSTALYWACHGGHKDIVEXLF-TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEK 211
+ K A A N+ A +++K
Sbjct: 164 ARTDLRNIEKKLAFDXATNAACASLLKK 191
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + G TPL++AA RG ++V +L+ +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLL 213
G+T LH A ++VE LL
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLL 100
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 27/112 (24%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AAK G +V+VL++ A W T LH A G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGA------DVNASDIWG---------RTPLHLAATVG 91
Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCS 184
+L+ V++L+E Y A+VN G+T ++ G++ + AEIL+K +
Sbjct: 92 HLEIVEVLLE------YGADVNAQDKFGKTAFDISIDNGNEDL-AEILQKLN 136
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
L N + T LH AV + + L+ AG + P + G TPL++A +G V
Sbjct: 34 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVG 92
Query: 178 EILEKCSSA------AHDGPNGKTALH-AAVNSYAADVVEKLLAKKRHLTRERDDCGWTP 230
+ + C++ NG T LH A+++ Y +VE L++ + + G T
Sbjct: 93 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG-IVELLVSLGADVNAQEPCNGRTA 151
Query: 231 LHHSAYLGLKDITALLLE 248
LH + L D+ +LLL+
Sbjct: 152 LHLAVDLQNPDLVSLLLK 169
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
+G++PLH A + G A V VL + C +L TN +T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQ---------SCTTPHLHSILKATNYNGHTCLHLASIH 124
Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS 185
G L V++L+ G + NG T L++A + +V+ +L KC +
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGA 172
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 69 SLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENT 128
S+L TN G + LH A+ G +V++L+ C + T
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--------------T 150
Query: 129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEI 179
ALH AV N D V +L++ G + G +P + R S ++ ++
Sbjct: 151 ALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQL 200
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
+ N E + L EA + G+++ VK L TPL+ AA +V +L
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ + G LH A SY V +LL K + D +TPLH +A G
Sbjct: 63 QHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 241 DITALLLEF---------DGSSALILDKD 260
+I LLL+ DG++ L L KD
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDLVKD 150
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 37/149 (24%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + G TPLY+A A G ++V E+L K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIV-EVLLK------- 68
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
NG A VN+ D G+TPLH +A++G +I +LL+
Sbjct: 69 --NG-----ADVNAV-------------------DAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
G+ DK K TA ++ G+E LA
Sbjct: 103 -GADVNAQDKFGK-TAFDISIGNGNEDLA 129
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 20/183 (10%)
Query: 73 QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
Q GDS LH A A+ +I K L N + T LH
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-----------LAFLNFQNNLQQTPLHL 51
Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA------ 186
AV + + L+ AG + P + G TPL++A +G V + + C++
Sbjct: 52 AVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Query: 187 AHDGPNGKTALH-AAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITAL 245
NG T LH A+++ Y +VE L++ + + G T LH + L D+ +L
Sbjct: 111 KATNYNGHTCLHLASIHGYLG-IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 246 LLE 248
LL+
Sbjct: 170 LLK 172
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
+G++PLH A + G A V VL + C +L TN +T LH A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQ---------SCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS 185
G L V++L+ G + NG T L++A + +V+ +L KC +
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGA 175
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 69 SLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENT 128
S+L TN G + LH A+ G +V++L+ C + T
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--------------T 153
Query: 129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEI 179
ALH AV N D V +L++ G + G +P + R S ++ ++
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQL 203
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 16/138 (11%)
Query: 75 NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
+A G +PLH AA G +V+VL++ A G+T L A
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLK---------NGADVNAVDHAGMT------PLRLAA 88
Query: 135 QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK 194
G+L+ V++L++ G + + ++ G TPL++AA G ++V +L+ + GK
Sbjct: 89 LFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 195 TALHAAVNSYAADVVEKL 212
TA ++++ D+ E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Query: 85 AAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKI 144
AA+ GR V++L+ + + W T LH A G+L+ V++
Sbjct: 21 AARAGRDDEVRILM----ANGADVNAEDASGW-----------TPLHLAAFNGHLEIVEV 65
Query: 145 LMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY 204
L++ G + + + G TPL +AA G ++V +L+ + + G T LH A
Sbjct: 66 LLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124
Query: 205 AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
++VE LL K +D G T S G +D+ +L
Sbjct: 125 HLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
GK L AA + D V L+A + E D GWTPLH +A+ G +I +LL+ +G+
Sbjct: 15 GKKLLEAA-RAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLK-NGA 71
Query: 253 SALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKL 312
+D MT L +AA GH + ++ + + + D G LH + H +
Sbjct: 72 DVNAVDH-AGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIV 129
Query: 313 KRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQI 354
+ LLK+ + ++ +++ G T I EI++++
Sbjct: 130 EVLLKN---GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+IL G + + + G TPL++AA G ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNAN-DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLL 213
G G+T LH A + ++VE LL
Sbjct: 77 GNTGRTPLHLAAWADHLEIVEVLL 100
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH AA G +V+VL+ K + T T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL----KNGADVNATGNTG-----------RTPLHLAAWAD 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC 183
+L+ V++L++ G + G+T ++ G++ + AEIL+K
Sbjct: 92 HLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDL-AEILQKL 135
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR 221
TPL +A G + + +++E G TAL AV + + EKLL+K ++
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN- 95
Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLE 248
+D G TPL S G +++ LLE
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
E +TAL AV+ L + L+ G N + + +G+TPL + G +M +LE +
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
+ G+T L A +++V+KLL ++ RD G T + G +++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASARIFGRQEVIK 184
Query: 245 LLLE 248
+ E
Sbjct: 185 IFTE 188
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T L ++ G + L+E G N N+ GETPL +A+ G ++V ++LE + +
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
G TA A+ + V K+ + R
Sbjct: 162 ARDLTGLTA-EASARIFGRQEVIKIFTEVRR 191
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKL 212
P++ N GET L++A+ +G V +L+ S G T LH A N VVE L
Sbjct: 4 PFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 213 LAKKR--HLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALI---------LDKDR 261
L K + T ++D +PLH +A G DI LLL + S + D
Sbjct: 63 LQHKALVNTTGYQND---SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 262 KMTALLMAASQGHESLA 278
M +LL+ + S A
Sbjct: 120 SMKSLLLLPEKNESSSA 136
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 58 KFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQ 104
K VE +L+ +L+ T + DSPLH AAK G +VK+L+ + +
Sbjct: 57 KVVELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G +PLH A G VV++L++ ++ T + ++ LH+A + G
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKA---------------LVNTTGYQNDSPLHDAAKNG 87
Query: 138 NLDAVKILMEAG 149
++D VK+L+ G
Sbjct: 88 HVDIVKLLLSYG 99
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
NT LH A +L+ V++L++ G + N +G TPL++AA G ++V +L+ +
Sbjct: 48 NTPLHLAADYDHLEIVEVLLKHGADVNAHDN-DGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 187 AHDGPNGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA-AH 188
L EA + G D V+ILM G + + + G TPL++AA ++V +L+ + AH
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
D +G T LH A ++VE LL K +D G T S G +D+ +L
Sbjct: 77 DN-DGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
KG++PLH AA +V+VL++ + + + +T LH A
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGAD---------------VNAHDNDGSTPLHLAALF 90
Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
G+L+ V++L++ G + G+T ++ G++ + AEIL+K +
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDL-AEILQKLN 136
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 124 EEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC 183
++ NT LH A + G+ + VK L+ G + + +G TPL++AA G ++V +L K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
+ +G T H A + ++V+ L AK
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
+G TPL+ AA G + V ++L K + +G T LH A + A++V+ LLAK
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 219 LTRERDDCGWTPLHHSAYLGLKDITALL 246
+ D G TP H + G +I LL
Sbjct: 68 VNARSKD-GNTPEHLAKKNGHHEIVKLL 94
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
G++PLH AAK G VK L+ A++ ++ NT LH A + G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS------KGADVNARS---------KDGNTPLHLAAKNG 53
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV 176
+ + VK+L+ G + + +G TP ++A G ++V
Sbjct: 54 HAEIVKLLLAKGADVNARSK-DGNTPEHLAKKNGHHEIV 91
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
+G T LH A + A+ V+KLL+K + D G TPLH +A G +I LLL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLL 62
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + + + +G TPL++AA G ++V +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEIL 87
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 19/151 (12%)
Query: 80 SPLHAAAKCGRPAVVKVLIEF--------AKKQPTAMKCCAKTAWQMLGL-------TNE 124
SPLH A G + VK+L++ A C +W + L
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 125 EENTA--LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
E + A +HEA + G+++ V L+ G N + + G TPLY+A + V ++LE
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLES 156
Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLL 213
+ + G + LHA + + ++ L+
Sbjct: 157 -GADVNQGKGQDSPLHAVARTASEELACLLM 186
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNL 139
SP+H AA G ++ LI W + + + + LHEA G+L
Sbjct: 5 SPMHEAAIHGHQLSLRNLI--------------SQGW-AVNIITADHVSPLHEACLGGHL 49
Query: 140 DAVKILMEAGPNFPYSANVNG-----ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK 194
VKIL++ G A VNG TPL+ A GS V +L+ +S + +
Sbjct: 50 SCVKILLKHG------AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLA 102
Query: 195 TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
+ +H A + V L+A ++ + G TPL+
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLY 139
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 149 GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADV 208
G + + GET L++AA +LE + A G+T LHAAV++ A V
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ LL + R G TPL +A L L+
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALE 102
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 54 SVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAK 113
SV + F+ Q SL QT+ G++ LH AA+ R K L+E A
Sbjct: 2 SVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRLLE----------ASAD 47
Query: 114 TAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSK 173
Q + T LH AV +IL+ + +G TPL +AA +
Sbjct: 48 AXIQ-----DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALE 102
Query: 174 KMVAEILEKCSSAAHDGPNGKTALH 198
M+ +++ + GK+ALH
Sbjct: 103 GMLEDLINSHADVNAVDDLGKSALH 127
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 34/154 (22%)
Query: 126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE---- 181
++ ++H+ G LD +K + G N + G TPL A+A G + V +LE
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 182 ----------KCSSAAHDG-------------------PNGKTALHAAVNSYAADVVEKL 212
S A+ G NG T L AV+ VE L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 213 LAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
LA+ LT E D G+TP+ + LG + + ++
Sbjct: 122 LARGADLTTEA-DSGYTPMDLAVALGYRKVQQVI 154
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 34/154 (22%)
Query: 126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE---- 181
++ ++H+ G LD +K + G N + G TPL A+A G + V +LE
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 182 ----------KCSSAAHDG-------------------PNGKTALHAAVNSYAADVVEKL 212
S A+ G NG T L AV VE L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 213 LAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
LA+ LT E D G+TP+ + LG + + ++
Sbjct: 122 LARGADLTTEA-DSGYTPMDLAVALGYRKVQQVI 154
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPY----SANVNGETPLYMAAARGSKKMVAEILEKC 183
TALH A NL+A +LMEA P + S G+T L++A + +V +L +
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 184 SSAA--------HDGPNGKTALHAAVNSYAADV----VEKLLAKKRHLTRERDDCGWTPL 231
+S + H P+ S+AA V + +LL + R +D G T L
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Query: 232 HHSAYLGLK-------DITALLLEFDGSSAL----ILDKDRKMTALLMAASQG 273
H L L+ + LLL +DG L ++ ++ +T +A +G
Sbjct: 159 H---ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAA 169
L N+E TALH AV G+ + VK L++ G N +A+ +G TPL+ AA+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAAS 112
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 68 PSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEEN 127
PSL N +G + LH A G +VK L++F + W
Sbjct: 63 PSL---PNDEGITALHNAVCAGHTEIVKFLVQFG----VNVNAADSDGW----------- 104
Query: 128 TALHEAVQCGNLDAVKILMEAG 149
T LH A C N+ K L+E+G
Sbjct: 105 TPLHCAASCNNVQVCKFLVESG 126
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 167 AAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDC 226
++ G +V I+ + + G TALH AV + ++V+ L+ ++ D
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD- 102
Query: 227 GWTPLHHSAYLGLKDITALLLE 248
GWTPLH +A + L+E
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVE 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAA 169
L N+E TALH AV G+ + VK L++ G N +A+ +G TPL+ AA+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAAS 112
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 167 AAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDC 226
++ G +V I+ + + G TALH AV + ++V K L + D
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV-KFLVQFGVNVNAADSD 102
Query: 227 GWTPLHHSAYLGLKDITALLLE 248
GWTPLH +A + L+E
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVE 124
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 68 PSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEEN 127
PSL N +G + LH A G +VK L++F + W
Sbjct: 63 PSL---PNDEGITALHNAVCAGHTEIVKFLVQFG----VNVNAADSDGW----------- 104
Query: 128 TALHEAVQCGNLDAVKILMEAG 149
T LH A C N+ K L+E+G
Sbjct: 105 TPLHCAASCNNVQVCKFLVESG 126
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 130 LHEAVQCGNLDAVKILMEAGP--NFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
LH A CG L+ ++ L+ G N P ++ TPL A G V +L K +
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHI---TPLLSAVYEGHVSCVKLLLSKGADKT 95
Query: 188 HDGPNGKTALHAAVNS 203
GP+G TAL A N
Sbjct: 96 VKGPDGLTALEATDNQ 111
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+ +G +PL AA G+ AVV+ L++ Q+LG E +AL A
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADP------------QLLGKGRE---SALSLA 92
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
G D VK+L++ G + + NG TPL A K V +LE + + +G
Sbjct: 93 CSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Query: 194 KTALHAAV 201
++ AV
Sbjct: 152 YNSMDLAV 159
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHL 219
G TPL AAA G +V +L+ + G ++AL A + D+V+ LL +
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 111
Query: 220 TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAG 279
E D G TPL ++ + +LLE G+ I + D ++ +A + G+ S+
Sbjct: 112 N-EYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTI-ETDSGYNSMDLAVALGYRSVQQ 168
Query: 280 TIIAH 284
I +H
Sbjct: 169 VIESH 173
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+ +G +PL AA G+ AVV+ L++ Q+LG E +AL A
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADP------------QLLGKGRE---SALSLA 74
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
G D VK+L++ G + + NG TPL A K V +LE + + +G
Sbjct: 75 CSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Query: 194 KTALHAAV 201
++ AV
Sbjct: 134 YNSMDLAV 141
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHL 219
G TPL AAA G +V +L+ + G ++AL A + D+V+ LL +
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 93
Query: 220 TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAG 279
E D G TPL ++ + +LLE G+ I + D ++ +A + G+ S+
Sbjct: 94 -NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTI-ETDSGYNSMDLAVALGYRSVQQ 150
Query: 280 TIIAH 284
I +H
Sbjct: 151 VIESH 155
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 43/172 (25%)
Query: 173 KKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
+ M A +L+ + A NG TALH +V+ VV++LL +++ G++P+
Sbjct: 93 RAMSARLLDYVVNIAD--SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIM 150
Query: 233 HSAYLGLK---DITALLLEFD-----------GSSALIL--------------------- 257
+A LK DI +L F G +AL+L
Sbjct: 151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN 210
Query: 258 -DKDRKMTALLMAASQGHESLAGTIIAHYPEC-YDLVDNGGWNVLHFLMVSL 307
D TAL+ A GH+ +AG ++A P C L D G LMV+L
Sbjct: 211 VQDDDGSTALMCACEHGHKEIAGLLLA-VPSCDISLTDRDGSTA---LMVAL 258
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+ +G +PL AA G+ AVV+ L++ Q+LG E +AL A
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADP------------QLLGKGRE---SALSLA 76
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
G D VK+L++ G + + NG TPL A K V +LE + + +G
Sbjct: 77 CSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Query: 194 KTALHAAV 201
++ AV
Sbjct: 136 YNSMDLAV 143
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHL 219
G TPL AAA G +V +L+ + G ++AL A + D+V+ LL +
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 220 TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAG 279
E D G TPL ++ + +LLE G+ I + D ++ +A + G+ S+
Sbjct: 96 -NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTI-ETDSGYNSMDLAVALGYRSVQQ 152
Query: 280 TIIAH 284
I +H
Sbjct: 153 VIESH 157
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 81 PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLD 140
PLH AA +VK+L+ F+ + +++ NTAL+ AV GN
Sbjct: 65 PLHQAATLEDTKIVKILL-FSGLDDSQF--------------DDKGNTALYYAVDSGNXQ 109
Query: 141 AVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
VK+ ++ + +T Y A +V+ L + S
Sbjct: 110 TVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPST 155
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
+A + A+ N+ V L+ AG + E PL+ AA K+V +L +
Sbjct: 33 SASYYAIADNNVRLVCTLLNAGA---LKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS 89
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGW-TPLHHSAYLGLKDITALL 246
G TAL+ AV+S V KL KK GW T +H+ L I +
Sbjct: 90 QFDDKGNTALYYAVDSGNXQTV-KLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYF 148
Query: 247 L 247
L
Sbjct: 149 L 149
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 159 NGETPLYMAAARGSKKMVAE---ILEKCSSAAHDGP--------NGKTALHAAVNSYAAD 207
NG T L + A + VA ++EK + +DG G+TALH A
Sbjct: 234 NGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXP 293
Query: 208 VVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALL 267
+V+ L+ +K ++D+ G TP+ +A G ++ L++ G+S +D TA
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ-QGASVEAVDAT-DHTARQ 351
Query: 268 MAASQGHESLAGTIIAHYPE 287
+A + H ++ PE
Sbjct: 352 LAQANNHHNIVDIFDRCRPE 371
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 128 TALHEAVQCGNLDAVKILM-EAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS 185
TALH A Q N VK L+ E G N + +G+TP+ +AA G ++V ++++ +S
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKD-KQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 149 GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADV 208
G + + GET L++AA +LE + A G+T LHAAV++ A V
Sbjct: 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ L+ + R G TPL +A L ++
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 15/150 (10%)
Query: 49 NKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAM 108
N E E + + + SL QT+ G++ LH AA+ R K L+E +
Sbjct: 28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---- 83
Query: 109 KCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAA 168
+ + T LH AV +IL+ + +G TPL +AA
Sbjct: 84 -----------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 132
Query: 169 ARGSKKMVAEILEKCSSAAHDGPNGKTALH 198
+ M+ +++ + GK+ALH
Sbjct: 133 RLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
T LH A +L+ V++L++ G + + + GETPL++ A G ++V +L+ +
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 188 HDGPNGKTALHAAVNSYAADVVEKL 212
GKTA ++++ D+ E L
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
L EA + G D V+ILM G + V G TPL++AA ++V +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
G+T LH ++VE LL K +D G T S G +D+ +L
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 149 GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADV 208
G + + GET L++AA +LE + A G+T LHAAV++ A V
Sbjct: 47 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 106
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ L+ + R G TPL +A L ++
Sbjct: 107 FQILIRNRATDLDARMHDGTTPLILAARLAVE 138
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 15/150 (10%)
Query: 49 NKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAM 108
N E E + + + SL QT+ G++ LH AA+ R K L+E +
Sbjct: 29 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---- 84
Query: 109 KCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAA 168
+ + T LH AV +IL+ + +G TPL +AA
Sbjct: 85 -----------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 133
Query: 169 ARGSKKMVAEILEKCSSAAHDGPNGKTALH 198
+ M+ +++ + GK+ALH
Sbjct: 134 RLAVEGMLEDLINSHADVNAVDDLGKSALH 163
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 149 GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADV 208
G + + GET L++AA +LE + A G+T LHAAV++ A V
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ L+ + R G TPL +A L ++
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVE 105
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 19/148 (12%)
Query: 51 EGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKC 110
+ +V + F+ Q SL QT+ G++ LH AA+ R K L+E +
Sbjct: 2 DAPAVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA------ 51
Query: 111 CAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAAR 170
+ + T LH AV +IL+ + +G TPL +AA
Sbjct: 52 ---------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102
Query: 171 GSKKMVAEILEKCSSAAHDGPNGKTALH 198
+ M+ +++ + GK+ALH
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALH 130
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGP--NFPYSANVNGETPLYMAAARGSKKMVAEI 179
T E LH A CG L+ ++ L+ G N P ++ TPL A G V +
Sbjct: 36 TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI---TPLLSAVYEGHVSCVKLL 92
Query: 180 LEKCSSAAHDGPNGKTALHAAVNS 203
L K + GP+G TA A N
Sbjct: 93 LSKGADKTVKGPDGLTAFEATDNQ 116
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 149 GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADV 208
G + + G T L++AAA +LE + A G+T LHAAV++ A V
Sbjct: 46 GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
+ L+ + R G TPL +A L ++
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 49 NKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAM 108
N E E + + + SL QT+ G + LH AA R K L+E +
Sbjct: 28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA---- 83
Query: 109 KCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAA 168
+ + T LH AV +IL+ + +G TPL +AA
Sbjct: 84 -----------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 132
Query: 169 ARGSKKMVAEILEKCSSAAHDGPNGKTALH 198
+ M+ +++ + GK+ALH
Sbjct: 133 RLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%)
Query: 142 VKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAV 201
+ L+ G + + GET L++AA +L+ + A G+T LHAAV
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Query: 202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
+ A V + LL + R G TPL +A L ++ + L+ D
Sbjct: 93 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
ETP + AA + ++ ++++LE A D NG+TAL V +D +LLA+
Sbjct: 46 ETPWWTAARKADEQALSQLLEDRDVDAVD-ENGRTAL-LFVAGLGSDKCVRLLAEAGADL 103
Query: 221 RERD-DCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMA 269
RD G T LH +A ++ L+E + + ++ +R +TAL +A
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVEL--GADIEVEDERGLTALELA 151
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 155 SANVNGETPLYMAAARGSKKMVAEILEKCSSAAH-DGPNGKTALHAAVNSYAADVVEKLL 213
+ + NG T L A GS K V + E + H D G TALH A +VVE L+
Sbjct: 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
+E TAL G+ V++L EAG + + G T L+MAA ++V ++E
Sbjct: 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 182 KCSSAAHDGPNGKTALHAA 200
+ + G TAL A
Sbjct: 133 LGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
ETP + AA + ++ ++++LE A D NG+TAL V +D +LLA+
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRDVDAVD-ENGRTAL-LFVAGLGSDKCVRLLAEAGADL 102
Query: 221 RERD-DCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMA 269
RD G T LH +A ++ L+E + + ++ +R +TAL +A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVEL--GADIEVEDERGLTALELA 150
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAH-DGPNGKTALHAAVNSYAADVVEKLL 213
NG T L A GS K V + E + H D G TALH A +VVE L+
Sbjct: 75 NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
+E TAL G+ V++L EAG + + G T L+MAA ++V ++E
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 182 KCSSAAHDGPNGKTALHAA 200
+ + G TAL A
Sbjct: 132 LGADIEVEDERGLTALELA 150
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNL 139
SP+H AA G ++ LI W + + + + LHEA G+L
Sbjct: 61 SPMHEAAIHGHQLSLRNLI--------------SQGW-AVNIITADHVSPLHEACLGGHL 105
Query: 140 DAVKILMEAGPNFPYSANVNG-----ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK 194
VKIL++ G A VNG TPL+ A GS V +L+ +S + +
Sbjct: 106 SCVKILLKHG------AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLA 158
Query: 195 TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
+ +H A + V L+A ++ + G TPL+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLY 195
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 289 YDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCN 348
+ V G LH ++ HE L LL ++D +N++G T LH+ A L +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 349 EIVRQIGKG 357
E + G G
Sbjct: 62 EKLYAAGAG 70
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 116 WQM-LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKK 174
W++ L N + +T LH AV + + V++L +AG + G TPL++A +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAV 201
++ +L+ + G+T L +A+
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSAL 233
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
+G T LH AV A++V L L + CG TPLH + + LLL+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 289 YDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCN 348
+ V G LH ++ HE L LL ++D +N++G T LH+ A L +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 349 EIVRQIGKG 357
E + G G
Sbjct: 62 EKLYAAGAG 70
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 116 WQM-LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKK 174
W++ L N + +T LH AV + + V++L +AG + G TPL++A +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAV 201
++ +L+ + G+T L +A+
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSAL 233
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
+G T LH AV A++V L L + CG TPLH + + LLL+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAA 169
NEE TALH A+ N V L+ AG N S + +G TPL+ AA+
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAAS 96
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 144 ILMEAG-PNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVN 202
+L +AG P A +N L AA G ++V + +++ + + G TALH A+
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63
Query: 203 SYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA 235
+V+ L+ ++ D GWTPLH +A
Sbjct: 64 GANYSIVDFLITAGANVNSP-DSHGWTPLHCAA 95
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
T+ G SPLH AA+ G + +VL+ + K + T LH A
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV---------------DRTPLHMA 74
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMA----AARGSKKMVAEILEKCSSAAHD 189
G+ + V++L++ G A+VN + L M A + + V E+L K + H
Sbjct: 75 ASEGHANIVEVLLKHG------ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 190 GPNG-KTALHAAVNSYAADVVEKL 212
KTA ++++ D+ E L
Sbjct: 129 QSKFCKTAFDISIDNGNEDLAEIL 152
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 224 DDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIA 283
D G +PLH +A G T +LL S DR T L MAAS+GH ++ ++
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLLK 88
Query: 284 H 284
H
Sbjct: 89 H 89
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 338 ILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRG-QY 396
I +TLS +T +EI ++IG+ + +AV + + + IE YG G+ ++ RG Y
Sbjct: 242 ITSTLSLKTIDEIAQRIGE-EHEAVRELRDFITQIEAYGF----GDWVIFDASVVRGLAY 296
Query: 397 PKGVVKLGQDKSHSF 411
G+V G D+ +F
Sbjct: 297 YTGIVFEGFDRDGNF 311
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 71/181 (39%), Gaps = 41/181 (22%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVN-------------GETPLYMAAARGSKK 174
TALH A++ N V +L+E G + +AN + GE PL +AA
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 175 MVAEILEKCSSAAHDGPN---GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPL 231
+V +L+ A G T LHA V +V + + + +T ++
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALV-----EVADNTVDNTKFVTSXYNEILILGA 217
Query: 232 HHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIA---HYPE 287
L L++IT +RK +T L +AAS G + I+ H PE
Sbjct: 218 KLHPTLKLEEIT----------------NRKGLTPLALAASSGKIGVLAYILQREIHEPE 261
Query: 288 C 288
C
Sbjct: 262 C 262
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 37 VLHVNIARQSLKNKEGESV-------STKFVEQILEICPSLLIQTNAKGDSPLHAAAKCG 89
+LH + N+ G++ ST ++L+ S +Q + G SP+H AA+ G
Sbjct: 21 LLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG 79
Query: 90 RPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG 149
+KVL+E + + + +H AVQ G+ V L A
Sbjct: 80 FLDTLKVLVEHGAD---------------VNVPDGTGALPIHLAVQEGHTAVVSFL--AA 122
Query: 150 PNFPYSANVNGETPLYMAAARGSKKMV 176
+ + + G TPL +A RG++ +V
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLV 149
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 37 VLHVNIARQSLKNKEGESV-------STKFVEQILEICPSLLIQTNAKGDSPLHAAAKCG 89
+LH + N+ G++ ST ++L+ S +Q + G SP+H AA+ G
Sbjct: 27 LLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG 85
Query: 90 RPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG 149
+KVL+E + + + +H AVQ G+ V L A
Sbjct: 86 FLDTLKVLVEHGAD---------------VNVPDGTGALPIHLAVQEGHTAVVSFL--AA 128
Query: 150 PNFPYSANVNGETPLYMAAARGSKKMV 176
+ + + G TPL +A RG++ +V
Sbjct: 129 ESDLHRRDARGLTPLELALQRGAQDLV 155
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 296 GWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIG 355
G LH+ ++ + LK LL+ K+ I+ NE G TPL I L C E++
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELL---- 257
Query: 356 KGDTQAVNKKKISVKHIE 373
TQA++ + S H+E
Sbjct: 258 ---TQALSGRFNSHVHVE 272
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK--CSSAA 187
+H+A + G LD ++ L+E + N G PL++AA G ++V E L K S+
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVV-EFLVKHTASNVG 131
Query: 188 HDGPNGKTA 196
H G TA
Sbjct: 132 HRNHKGDTA 140
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Query: 56 STKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEF--------------- 100
TK V++IL+ + + + +G++PL+ A + K LI+
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 101 ----AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA 156
A+ + + K A L N AL A + G++D VK+L+E G
Sbjct: 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 157 NVNGETPLYMAAA-RGSKKMVAEI----LEKCSSAAHDGPNGKTALHAAVNSYAADVVEK 211
N G T L A R ++ +I +E + + +G+TA+ A N + K
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA-NQKGYTEISK 195
Query: 212 LLAK 215
+LA+
Sbjct: 196 ILAQ 199
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 78 GDSPLHAAAKCGRPAVVKVLIEFAKKQ----PTAMKCCAKTAWQMLG--LTNEEENTALH 131
G P+H A + +V L+E AK++ + + C + +G + + + TALH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 132 EAVQCGN--LDAVKILMEAGPNFPYSANVNGETPLYMAAA---RGSKKMVAEILEKCSSA 186
V G L+ +KIL++ G + P + + ETPL A R + + + + SS
Sbjct: 144 WCVGLGPEYLEXIKILVQLGAS-PTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSL 202
Query: 187 AHDGPN--GKTALHAAVNSYAADVVEKLL 213
D N G + LH A+ DV + +
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAXRFV 231
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSAN------------VNGETPLYMAAARGSKKM 175
+ALH A++ +L VK+L+E G N A GE PL +AA +
Sbjct: 97 SALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDV 156
Query: 176 VAEILE---KCSSAAHDGPNGKTALHAAV 201
V+ +LE + +S G T LHA V
Sbjct: 157 VSYLLENPHQPASLQATDSQGNTVLHALV 185
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 75 NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
+A G SP+H AA+ G +KVL+E + + + +H A+
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGAD---------------VNALDSTGSLPIHLAI 115
Query: 135 QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV 176
+ G+ V L A + + + +G TPL +A RG++ ++
Sbjct: 116 REGHSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLM 155
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 75 NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
+A G SP+H AA+ G +KVL+E + + + +H A+
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGAD---------------VNALDSTGSLPIHLAI 117
Query: 135 QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV 176
+ G+ V L A + + + +G TPL +A RG++ ++
Sbjct: 118 REGHSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLM 157
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 174 KMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKL-LAKKRHLTRERDDCGWTPLH 232
K++ EK AA++ K A H A+ AD+VE + +KR LT ++
Sbjct: 203 KILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLT--------LSVY 254
Query: 233 HSAYLGLKDI 242
YLG+KD+
Sbjct: 255 LEDYLGVKDL 264
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSAN------------VNGETPLYMAAARGSKK 174
++ALH A++ +L VK+L+E G + A GE PL +AA
Sbjct: 91 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150
Query: 175 MVAEILE---KCSSAAHDGPNGKTALHAAV 201
+V +LE + +S G T LHA V
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALV 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,024,003
Number of Sequences: 62578
Number of extensions: 553212
Number of successful extensions: 2001
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 363
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)