BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009807
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 184 PTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNI------DVHCLA 237
P ++ + R + A+G L++EG++R++ E V+ +R +I D++ +
Sbjct: 289 PMVVDICIREIEARG-LKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIIT 347
Query: 238 GLIKAWFRELPTGVLDSLSPEQVMQA-------QSEEECARLVRLLPPTEAALLDWAINL 290
G +K +FR+LP V+ + + + A + E ++ LLPP L + +
Sbjct: 348 GALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIH 407
Query: 291 MADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDS 350
+ V E N MNA N+ +VF P T M P + + + M + K LI++ L E ED
Sbjct: 408 LKKVTMNEKDNFMNAENLGIVFGP--TLMRPPEDSTLTTLHDMRYQK-LIVQILIENEDV 464
Query: 351 L 351
L
Sbjct: 465 L 465
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 30/252 (11%)
Query: 129 RHVAHVTFDRFNGFLGLPVE-FEPEVPRRAPSASA-----NVFGVSTESMQLSFDSRGNS 182
R V F G+ V+ + RR +A +FGV ++ S
Sbjct: 23 RLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGH 82
Query: 183 VPTILL----LMQRHLYAQGGLQAEG-IFRINAENGQEEYVRDQLNRGMVPDNIDVHCLA 237
+P+ L+ ++ H++ +G + G + R+ A + ++ L+ D +A
Sbjct: 83 IPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCD------IA 136
Query: 238 GLIKAWFRELPTGVLDSLSPEQVMQAQS----EEECARLVR--LLPPTEAALLDWAINLM 291
GL+K +FRELP +L + E +++AQ E+ A L+ LL +L + N +
Sbjct: 137 GLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFL 196
Query: 292 ADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKERE--- 348
+V+ NKM++ N+A++FAPN+ Q S+ + + L+ +++TL +
Sbjct: 197 RNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDI 256
Query: 349 ----DSLVESIP 356
D ++E IP
Sbjct: 257 GRVPDFILEKIP 268
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 202 AEGIFRINAENGQEEYVRDQLNRGMVPDNI------DVHCLAGLIKAWFRELPTGVLDSL 255
+GI+R++ + +R + + VPD D+H + L K +FRELP +L
Sbjct: 54 VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQ 113
Query: 256 SPEQV---MQAQSEEECARLVRL------LPPTEAALLDWAINLMADVAQMEHFNKMNAR 306
E+ + A ++EE RL+++ LPP L++ + ++ +A M+A+
Sbjct: 114 LYEKFSDAVSAATDEE--RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171
Query: 307 NVAMVFAPNMTQ 318
N+A+V+APN+ +
Sbjct: 172 NLAIVWAPNLLR 183
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 199 GLQAEGIFRINAENGQEEYVRDQLNRGMVPDNI------DVHCLAGLIKAWFRELPTGVL 252
GL +EG++R++ + E V+ +R +I D++ + G +K +FR+LP ++
Sbjct: 39 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 98
Query: 253 DS------LSPEQVMQAQSE-EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNA 305
+ ++M + E ++LLPP L + + + V E N MNA
Sbjct: 99 TYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNA 158
Query: 306 RNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSL 351
N+ +VF P T M P M A+ + + + L+++ L + ED L
Sbjct: 159 ENLGIVFGP--TLMRSPELDAMAALNDIRY-QRLVVELLIKNEDIL 201
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 199 GLQAEGIFRINAENGQEEYVRDQLNRGMVPDNI------DVHCLAGLIKAWFRELPTGVL 252
GL +EG++R++ + E V+ +R +I D++ + G +K +FR+LP ++
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359
Query: 253 DS------LSPEQVMQAQSE-EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNA 305
+ ++M + E ++LLPP L + + + V E N MNA
Sbjct: 360 TYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNA 419
Query: 306 RNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSL 351
N+ +VF P T M P M A+ + + + L+++ L + ED L
Sbjct: 420 ENLGIVFGP--TLMRSPELDAMAALNDIRY-QRLVVELLIKNEDIL 462
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 199 GLQAEGIFRINAENGQEEYVRDQL----NRGMVPDNIDVHCLAGLIKAWFRELPTGVLD- 253
GL EG++R++ ++ ++ Q N +V + V+ +AG +KA+F +LP ++
Sbjct: 52 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPY 111
Query: 254 SLSPEQVMQAQSEEECARL------VRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307
SL PE + A+ ++ RL V+ P + + I + V+Q N M A N
Sbjct: 112 SLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADN 171
Query: 308 VAMVFAPNM 316
+++ F P +
Sbjct: 172 LSICFWPTL 180
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 15/187 (8%)
Query: 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQG-GLQAEGIFRINAENGQEEYVRDQLN 223
FGVS + +Q + P ++L + Y Q L EGIFR +A V+ + N
Sbjct: 45 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 101
Query: 224 RGMVPDNID----VHCLAGLIKAWFRELPTGVLD-SLSPE-----QVMQAQSEEECARLV 273
G+ P + D +H A ++K + RELP +L L P + ++Q +++
Sbjct: 102 MGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 160
Query: 274 RLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVM 333
+ LP +L + + ++ NKM N+A+VF PN+ D L +
Sbjct: 161 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 220
Query: 334 NFLKTLI 340
F K L+
Sbjct: 221 TFTKFLL 227
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 15/187 (8%)
Query: 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQG-GLQAEGIFRINAENGQEEYVRDQLN 223
FGVS + +Q + P ++L + Y Q L EGIFR +A V+ + N
Sbjct: 6 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 62
Query: 224 RGMVPDNID----VHCLAGLIKAWFRELPTGVLD-SLSPE-----QVMQAQSEEECARLV 273
G+ P + D +H A ++K + RELP +L L P + ++Q +++
Sbjct: 63 MGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 121
Query: 274 RLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVM 333
+ LP +L + + ++ NKM N+A+VF PN+ D L +
Sbjct: 122 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 181
Query: 334 NFLKTLI 340
F K L+
Sbjct: 182 TFTKFLL 188
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 199 GLQAEGIFRI-----NAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLD 253
GL EG++R+ + +N Q+++ +D N +V + V+ +AG +KA+F +LP ++
Sbjct: 42 GLCTEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIP 100
Query: 254 -SLSPEQVMQAQSEEECARL------VRLLPPTEAALLDWAINLMADVAQMEHFNKMNAR 306
SL PE + A+ ++ RL V+ P + + I + V+Q N M A
Sbjct: 101 YSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTAD 160
Query: 307 NVAMVFAPNM 316
N+++ F P +
Sbjct: 161 NLSICFWPTL 170
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 15/187 (8%)
Query: 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQG-GLQAEGIFRINAENGQEEYVRDQLN 223
FGVS + +Q + P ++L + Y Q L EGIFR +A V+ + N
Sbjct: 10 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 66
Query: 224 RGMVPDNID----VHCLAGLIKAWFRELPTGVLD-SLSPE-----QVMQAQSEEECARLV 273
G+ P + D +H A ++K + RELP +L L P + ++Q +++
Sbjct: 67 MGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 125
Query: 274 RLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVM 333
+ LP +L + + ++ NKM N+A+VF PN+ D L +
Sbjct: 126 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 185
Query: 334 NFLKTLI 340
F K L+
Sbjct: 186 TFTKFLL 192
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 15/187 (8%)
Query: 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQG-GLQAEGIFRINAENGQEEYVRDQLN 223
FGVS + +Q + P ++L + Y Q L EGIFR +A V+ + N
Sbjct: 9 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 65
Query: 224 RGMVPDNID----VHCLAGLIKAWFRELPTGVLD-SLSPE-----QVMQAQSEEECARLV 273
G+ P + D +H A ++K + RELP +L L P + ++Q +++
Sbjct: 66 MGL-PVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 124
Query: 274 RLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVM 333
+ LP +L + + ++ NKM N+A+VF PN+ D L +
Sbjct: 125 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 184
Query: 334 NFLKTLI 340
F K L+
Sbjct: 185 TFTKFLL 191
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 15/187 (8%)
Query: 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQG-GLQAEGIFRINAENGQEEYVRDQLN 223
FGVS + +Q + P ++L + Y Q L EGIF +A V+ + N
Sbjct: 37 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYN 93
Query: 224 RGMVPDNID----VHCLAGLIKAWFRELPTGVLD-SLSPE-----QVMQAQSEEECARLV 273
G+ P + D +H A ++K + RELP +L L P + ++Q +++
Sbjct: 94 MGL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 152
Query: 274 RLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVM 333
+ LP +L + + ++ NKM N+A+VF PN+ D L +
Sbjct: 153 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 212
Query: 334 NFLKTLI 340
F K L+
Sbjct: 213 TFTKFLL 219
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 164 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN 223
+FG+S ++ +++P +L M L +G L +GIFR +A ++++LN
Sbjct: 12 LFGISLPNI-----CENDNLPKPVLDMLFFLNQKGPL-TKGIFRQSANVKSCRELKEKLN 65
Query: 224 RGMVPDNID---VHCLAGLIKAWFRELPTGVLDSLSPEQ---VMQAQSEEE----CARLV 273
G V ++D + +A ++K + R +P + S + VM ++EE RL+
Sbjct: 66 SG-VEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL 124
Query: 274 RLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNM 316
LP LL + ++ ++ Q N+M A N+A+ AP++
Sbjct: 125 DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSI 167
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 199 GLQAEGIFRINAENGQEEYVRDQL----NRGMVPDNIDVHCLAGLIKAWFRELPTGVLDS 254
GL EGI+R++ + E ++ Q N + + V+ +AG +K++F ELP D
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELP----DP 138
Query: 255 LSPEQVM-----------QAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKM 303
L P + + Q +++ P + + I+ + V+ N M
Sbjct: 139 LVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLM 198
Query: 304 NARNVAMVFAPNMTQ----MSDPLTA 325
+ N+++ F P + + D LTA
Sbjct: 199 TSENLSICFWPTLMRPDFSTMDALTA 224
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 199 GLQAEGIFRIN---AENGQEEYVRDQLNRGMVPDNI--DVHCLAGLIKAWFRELPTGVLD 253
GL +GI+R++ A + ++ +Q + + D+ D+H + G +K +FRELP +
Sbjct: 50 GLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFP 109
Query: 254 SLSPEQVMQAQSE-------EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNAR 306
EQ ++A + E LV+ LPP + + + N M+ +
Sbjct: 110 YSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQ 169
Query: 307 NVAMVFAPNM 316
++ +VF P +
Sbjct: 170 SLGIVFGPTL 179
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 197 QGGLQAEGIFRINAENGQEEYVRDQLN---RGMVPDNIDVHCLAGLIKAWFRELPTGVLD 253
+ GL+ ++R + + E +R L+ + + IDVH LA K + +LP V+
Sbjct: 38 KKGLECSTLYRTQSSSNLAE-LRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIP 96
Query: 254 --------SLSPEQVMQAQSEEECARLVRLL------PPTEAALLDWAINLMADVAQMEH 299
SL+PE QS EE +L++ L P L + + ++Q
Sbjct: 97 AAVYSEMISLAPE----VQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSS 152
Query: 300 FNKMNARNVAMVFAPNMTQMS 320
N +NAR ++ +F+P + + S
Sbjct: 153 KNLLNARVLSEIFSPMLFRFS 173
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 162 ANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQ 221
+VFGV + ++ G +P + R+L L G+FR + + + +R Q
Sbjct: 18 GSVFGVP---LTVNVQRTGQPLPQSIQQAMRYL-RNHCLDQVGLFRKSGVKSRIQALR-Q 72
Query: 222 LNRGMVP----DNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQA-------QSEEECA 270
+N G + + + +A ++K +FR+LP ++ + E +Q Q +
Sbjct: 73 MNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIK 132
Query: 271 RLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMS 320
+ LLP +L + ++DV N+M N+A+ AP++ ++
Sbjct: 133 AAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLN 182
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 152 EVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAE 211
+VPR S +N+ + FDS +V +L R LY + G Q + N+
Sbjct: 229 QVPRGPESDHSNMGQCQGSGFFMHFDSSSVNVGATAVLESRTLYPKRGFQCLQFYLYNS- 287
Query: 212 NGQEEYVRDQLN---RGMVPDNIDVHCLAGLIKAWFRELPTG 250
G E DQLN R DN+D + L++ +E+PTG
Sbjct: 288 -GSES---DQLNIYIREYSADNVDGNLT--LVEE-IKEIPTG 322
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 152 EVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAE 211
+VPR S +N+ + FDS +V +L R LY + G Q + N+
Sbjct: 268 QVPRGPESDHSNMGQCQGSGFFMHFDSSSVNVGATAVLESRTLYPKRGFQCLQFYLYNS- 326
Query: 212 NGQEEYVRDQLN---RGMVPDNIDVHCLAGLIKAWFRELPTG 250
G E DQLN R DN+D + L++ +E+PTG
Sbjct: 327 -GSES---DQLNIYIREYSADNVDGNLT--LVEE-IKEIPTG 361
>pdb|1CEE|B Chain B, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 59
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 115 KELCSMEIGLPTNVRHVAHVTFDRFNGF 142
K++ +IG P+ +HV+HV +D NGF
Sbjct: 2 KKISKADIGAPSGFKHVSHVGWDPQNGF 29
>pdb|2VLA|A Chain A, Crystal Structure Of Restriction Endonuclease Bpuji
Recognition Domain In Complex With Cognate Dna
Length = 285
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 424 IENIIPAGTLSLADSCPCDVISQVNSLTNGLQE 456
++N++PA + D CPCD S V N L E
Sbjct: 22 LDNLLPAYANIIDDICPCDKASFVKDFNNRLIE 54
>pdb|1EES|B Chain B, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 46
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 121 EIGLPTNVRHVAHVTFDRFNG-FLGLPVEF 149
EI LP++ H HV FD G F G+P ++
Sbjct: 7 EISLPSDFEHTIHVGFDAVTGEFTGIPEQW 36
>pdb|2QME|I Chain I, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 36
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 121 EIGLPTNVRHVAHVTFDRFNG-FLGLPVEF 149
EI LP++ H HV FD G F G+P ++
Sbjct: 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQW 30
>pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase
pdb|1GVF|B Chain B, Structure Of Tagatose-1,6-Bisphosphate Aldolase
Length = 286
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 215 EEYVRDQLNRGMVPDNIDVH---CLAGLIKAWFRELPTG 250
+E+VR + G+ N+ AG +KAWF E P G
Sbjct: 215 DEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQG 253
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 121 EIGLPTNVRHVAHVTFDRFNG-FLGLPVEF 149
EI LP++ H HV FD G F G+P ++
Sbjct: 5 EISLPSDFEHTIHVGFDAVTGEFTGMPEQW 34
>pdb|2ODB|B Chain B, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 35
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 121 EIGLPTNVRHVAHVTFDRFNG-FLGLPVEFE 150
EI P N +H H +FD G F+GLP +++
Sbjct: 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQ 31
>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid
Length = 396
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 189 LMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN-RGMVPDNIDVHCLA 237
+ Q ++ GGL E + R+ E G +LN GM PDN+ C A
Sbjct: 342 IKQNGMFFFGGLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEA 391
>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric
Acid
pdb|2D65|A Chain A, Aspartate Aminotransferase Mutant Mabc
Length = 396
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 189 LMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN-RGMVPDNIDVHCLA 237
+ Q ++ GGL E + R+ E G +LN GM PDN+ C A
Sbjct: 342 IKQNGMFFFGGLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEA 391
>pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric
Acid
Length = 396
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 189 LMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN-RGMVPDNIDVHCLA 237
+ Q ++ GGL E + R+ E G +LN GM PDN+ C A
Sbjct: 342 IKQNGMFFFGGLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEA 391
>pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
GLUTARIC ACID
pdb|1CZE|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
SUCCINIC ACID
Length = 396
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 189 LMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN-RGMVPDNIDVHCLA 237
+ Q ++ GGL E + R+ E G +LN GM PDN+ C A
Sbjct: 342 IKQNGMFFFGGLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEA 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,932,077
Number of Sequences: 62578
Number of extensions: 437169
Number of successful extensions: 1036
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 33
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)