Query 009807
Match_columns 525
No_of_seqs 397 out of 1735
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4270 GTPase-activator prote 100.0 1.5E-43 3.2E-48 383.3 25.8 242 115-356 94-348 (577)
2 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1.5E-40 3.2E-45 319.4 14.4 176 163-342 1-188 (188)
3 cd04390 RhoGAP_ARHGAP22_24_25 100.0 5.2E-39 1.1E-43 310.8 18.2 178 163-341 1-193 (199)
4 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.5E-38 3.1E-43 308.4 16.7 176 165-344 1-198 (200)
5 cd04372 RhoGAP_chimaerin RhoGA 100.0 2.1E-38 4.6E-43 305.6 17.6 154 165-322 1-167 (194)
6 cd04407 RhoGAP_myosin_IXB RhoG 100.0 2.3E-38 5E-43 303.8 16.6 171 165-340 1-184 (186)
7 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 4.1E-38 8.8E-43 305.6 18.4 186 162-351 2-199 (203)
8 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 5.1E-38 1.1E-42 301.7 16.6 178 165-342 1-187 (187)
9 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 3.8E-38 8.2E-43 304.4 14.4 155 163-322 1-168 (195)
10 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 1.1E-37 2.4E-42 299.0 16.7 156 165-324 1-168 (187)
11 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.6E-37 3.5E-42 304.3 17.9 157 164-321 1-171 (216)
12 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1.4E-37 3E-42 305.7 17.1 156 162-321 2-167 (220)
13 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.4E-37 3E-42 301.9 16.8 157 164-322 1-165 (202)
14 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 1.2E-37 2.6E-42 302.5 16.1 154 165-322 1-178 (203)
15 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1.6E-37 3.4E-42 303.5 16.7 153 165-321 1-185 (211)
16 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 1.9E-37 4E-42 305.8 16.7 159 164-323 1-201 (225)
17 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.7E-37 3.7E-42 297.8 15.4 153 165-322 1-163 (186)
18 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 3.2E-37 7E-42 297.3 17.2 185 161-351 2-195 (195)
19 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 4.8E-37 1E-41 295.8 17.8 179 164-351 1-188 (192)
20 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 3.2E-37 6.9E-42 298.3 16.6 170 165-338 1-186 (196)
21 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 3.8E-37 8.3E-42 295.7 16.7 176 163-340 1-187 (189)
22 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 3.7E-37 8.1E-42 294.3 15.9 154 165-319 1-164 (182)
23 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 7.6E-37 1.6E-41 293.0 16.7 171 165-344 1-183 (185)
24 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.4E-36 2.9E-41 296.2 16.9 156 165-322 1-172 (207)
25 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.2E-36 4.7E-41 292.0 17.7 156 164-322 1-169 (196)
26 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.2E-36 4.8E-41 295.8 17.5 158 165-323 1-182 (213)
27 cd04377 RhoGAP_myosin_IX RhoGA 100.0 2.9E-36 6.3E-41 289.0 17.3 155 165-324 1-165 (186)
28 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 4.1E-36 8.9E-41 288.6 16.6 154 165-322 1-169 (192)
29 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 8.4E-36 1.8E-40 286.6 15.1 157 164-320 1-173 (190)
30 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 3.1E-35 6.7E-40 286.5 17.5 143 179-322 5-167 (206)
31 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 4.8E-35 1.1E-39 280.2 16.4 170 166-342 2-183 (184)
32 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 7.1E-35 1.5E-39 282.3 16.9 171 171-346 4-187 (200)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 6.9E-35 1.5E-39 281.4 16.7 144 176-321 10-163 (193)
34 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.3E-34 4.9E-39 280.8 16.9 145 165-321 1-168 (208)
35 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 2.9E-34 6.2E-39 280.8 15.1 155 165-323 1-184 (212)
36 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2E-33 4.3E-38 276.2 17.3 183 161-345 9-218 (220)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.9E-33 4.1E-38 273.4 15.6 140 183-323 28-183 (203)
38 KOG2200 Tumour suppressor prot 100.0 9.2E-34 2E-38 301.3 10.8 202 108-318 249-462 (674)
39 smart00324 RhoGAP GTPase-activ 100.0 5E-31 1.1E-35 248.0 16.7 159 182-341 2-172 (174)
40 KOG4407 Predicted Rho GTPase-a 100.0 5.7E-31 1.2E-35 294.9 16.8 189 160-354 1153-1356(1973)
41 cd00159 RhoGAP RhoGAP: GTPase- 100.0 6E-30 1.3E-34 237.5 16.1 156 184-340 1-167 (169)
42 KOG4269 Rac GTPase-activating 100.0 1.3E-29 2.8E-34 278.3 14.4 167 155-321 890-1070(1112)
43 KOG1450 Predicted Rho GTPase-a 100.0 5.2E-28 1.1E-32 263.5 13.8 159 160-322 452-622 (650)
44 PF00620 RhoGAP: RhoGAP domain 99.9 1.6E-28 3.5E-33 225.1 7.8 138 184-322 1-149 (151)
45 KOG1451 Oligophrenin-1 and rel 99.9 5.2E-26 1.1E-30 241.6 19.1 173 185-362 390-577 (812)
46 KOG2710 Rho GTPase-activating 99.9 4.6E-26 1E-30 239.2 17.8 138 181-319 92-254 (412)
47 KOG4406 CDC42 Rho GTPase-activ 99.9 6E-26 1.3E-30 234.8 14.0 181 160-342 249-440 (467)
48 KOG1453 Chimaerin and related 99.9 6.5E-25 1.4E-29 253.3 16.7 190 164-357 602-807 (918)
49 KOG1117 Rho- and Arf-GTPase ac 99.9 2.7E-23 5.8E-28 227.9 12.0 150 166-320 714-875 (1186)
50 KOG3564 GTPase-activating prot 99.9 1.9E-22 4E-27 210.9 15.8 173 180-355 359-545 (604)
51 KOG1452 Predicted Rho GTPase-a 99.8 1E-18 2.3E-23 175.7 10.1 155 161-319 181-351 (442)
52 KOG4724 Predicted Rho GTPase-a 99.8 8.5E-19 1.8E-23 189.6 7.3 208 160-375 78-294 (741)
53 KOG4271 Rho-GTPase activating 99.7 3.6E-17 7.7E-22 181.9 8.4 152 161-317 914-1076(1100)
54 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 3.6E-15 7.9E-20 144.5 13.9 139 183-322 6-167 (198)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.5 1.2E-13 2.5E-18 135.9 12.5 172 163-351 20-228 (235)
56 KOG3565 Cdc42-interacting prot 99.2 9.2E-12 2E-16 139.0 5.5 140 179-320 214-366 (640)
57 KOG4370 Ral-GTPase effector RL 99.2 1.1E-10 2.5E-15 121.8 11.3 155 161-316 48-253 (514)
58 PF08101 DUF1708: Domain of un 98.3 8.6E-06 1.9E-10 87.6 13.6 139 183-322 8-169 (420)
59 KOG4724 Predicted Rho GTPase-a 97.7 2.4E-05 5.3E-10 86.4 3.3 156 161-321 413-590 (741)
60 KOG4271 Rho-GTPase activating 96.6 0.013 2.8E-07 67.6 10.9 137 181-318 369-536 (1100)
61 KOG1453 Chimaerin and related 96.5 0.0029 6.2E-08 74.8 5.1 156 164-321 462-669 (918)
62 KOG1449 Predicted Rho GTPase-a 92.1 0.063 1.4E-06 59.5 1.2 34 288-321 1-34 (670)
63 KOG1449 Predicted Rho GTPase-a 89.4 0.055 1.2E-06 59.9 -2.2 144 161-322 206-356 (670)
64 smart00285 PBD P21-Rho-binding 56.0 4.6 9.9E-05 28.9 0.4 29 122-150 1-30 (36)
65 cd01093 CRIB_PAK_like PAK (p21 35.8 19 0.00042 27.0 1.1 30 121-150 2-32 (46)
66 cd00132 CRIB PAK (p21 activate 31.7 18 0.00038 26.7 0.3 20 120-139 1-20 (42)
67 PF11600 CAF-1_p150: Chromatin 30.7 2.9E+02 0.0062 27.3 8.8 6 181-186 204-209 (216)
68 PF00786 PBD: P21-Rho-binding 30.1 17 0.00037 28.7 -0.0 31 121-151 1-32 (59)
69 KOG4370 Ral-GTPase effector RL 29.6 68 0.0015 35.2 4.3 34 231-264 118-151 (514)
70 KOG4270 GTPase-activator prote 28.7 25 0.00055 40.0 1.0 123 183-316 58-193 (577)
71 PF03471 CorC_HlyC: Transporte 23.5 1.5E+02 0.0033 24.3 4.5 45 202-249 4-48 (81)
72 PF15290 Syntaphilin: Golgi-lo 20.5 89 0.0019 32.5 3.0 40 16-60 19-58 (305)
No 1
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-43 Score=383.33 Aligned_cols=242 Identities=56% Similarity=0.860 Sum_probs=226.6
Q ss_pred ccccccccCCCcccccccceEeeeccc---ccCCCccCCCCCCCCCCCCCCCccccchhhhhhhhcCCCCCCCHHHHHHH
Q 009807 115 KELCSMEIGLPTNVRHVAHVTFDRFNG---FLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQ 191 (525)
Q Consensus 115 ~~~~~~~igwp~~i~~~a~it~~r~~~---~~gl~~~~~~~~p~~~~~~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i 191 (525)
.+.|.++++|++.+.+..+++|+++.+ |+|++.++.+..+++.+.+...+|||+++.++..++..+..||.|+..+.
T Consensus 94 ~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~ 173 (577)
T KOG4270|consen 94 EEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQ 173 (577)
T ss_pred HHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhhh
Confidence 578999999999999999999999999 99999999999999999999999999999999999888888999999999
Q ss_pred H-HHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCCC--CChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh----
Q 009807 192 R-HLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDN--IDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ---- 264 (525)
Q Consensus 192 ~-~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~--~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~~---- 264 (525)
. +||.++|++.|||||++|...+++.||++||.|..+.. +|||++|++||.||||||+||+++.+|.+|++..
T Consensus 174 ~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~ 253 (577)
T KOG4270|consen 174 SGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCEN 253 (577)
T ss_pred hhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccC
Confidence 9 88899999999999999999999999999999988876 9999999999999999999999999999988653
Q ss_pred ---hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChhHHHHHHHHHHHHHHHHHH
Q 009807 265 ---SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLII 341 (525)
Q Consensus 265 ---~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~ 341 (525)
+.+.++.++.+||+.|+.+|+|||.||+.|++++++|||+++||||||||||+|+.++.++++++.+++++++.+|+
T Consensus 254 e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~lie 333 (577)
T KOG4270|consen 254 EDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLIE 333 (577)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHHH
Confidence 22346778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccCCC
Q 009807 342 KTLKEREDSLVESIP 356 (525)
Q Consensus 342 ~ll~e~~~~if~~~p 356 (525)
.+|.+++..+-..+.
T Consensus 334 ~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 334 KTLEERDTSFPGELE 348 (577)
T ss_pred HHHHhhhccCCcccc
Confidence 999998777654444
No 2
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=1.5e-40 Score=319.42 Aligned_cols=176 Identities=22% Similarity=0.436 Sum_probs=161.3
Q ss_pred CccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC-----CCCChhhhh
Q 009807 163 NVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP-----DNIDVHCLA 237 (525)
Q Consensus 163 ~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~-----~~~Dvh~vA 237 (525)
++||++|+++. ...+..||.+|.+|++|| +++|+++|||||++|+..+++.+++.||+|..+ +..|+|+||
T Consensus 1 k~FG~~L~~~~---~~~~~~IP~~v~~~i~~l-~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va 76 (188)
T cd04383 1 KLFNGSLEEYI---QDSGQAIPLVVESCIRFI-NLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVA 76 (188)
T ss_pred CcCCccHHHHH---HHCCCCCChHHHHHHHHH-HHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHH
Confidence 48999999984 246788999999999999 689999999999999999999999999998643 468999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHH
Q 009807 238 GLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAM 310 (525)
Q Consensus 238 slLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAi 310 (525)
++||.|||+||+||||.++|+.|+++. +...++.++.+||+.|+.+|+||+.||++|+++++.||||++|||+
T Consensus 77 ~lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 156 (188)
T cd04383 77 GVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAI 156 (188)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccee
Confidence 999999999999999999999998874 2346889999999999999999999999999999999999999999
Q ss_pred hhhccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 009807 311 VFAPNMTQMSDPLTALMYAVQVMNFLKTLIIK 342 (525)
Q Consensus 311 VFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ 342 (525)
||||+|++.+++.+.+..+.++++++++||+|
T Consensus 157 vf~P~L~~~p~~~~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 157 CFGPTLMPVPEGQDQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred eeeccccCCCCCccHHHHHHHHHHHHHHHhcC
Confidence 99999999998888888899999999999864
No 3
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=5.2e-39 Score=310.81 Aligned_cols=178 Identities=27% Similarity=0.438 Sum_probs=151.0
Q ss_pred CccccchhhhhhhhcCCC-CCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC---CCCChhhhhH
Q 009807 163 NVFGVSTESMQLSFDSRG-NSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP---DNIDVHCLAG 238 (525)
Q Consensus 163 ~vFGv~Le~l~~~~~~~~-~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~---~~~Dvh~vAs 238 (525)
++||++|++++......+ ..||.+|.+|++|| +++|+++|||||++|+..+++++++.||.|... ..+|+|+||+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFI-REHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHH
Confidence 489999999854433333 56999999999999 689999999999999999999999999998643 4689999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHhhh---------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807 239 LIKAWFRELPTGVLDSLSPEQVMQAQS---------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA 309 (525)
Q Consensus 239 lLK~fLReLPePLlp~~l~~~ll~~~~---------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA 309 (525)
+||.|||+||+||+|.+.|+.|+.+.+ ..+++.++..||+.|+.+|.||+.||++|+++++.|||++.|||
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999987632 34578889999999999999999999999999999999999999
Q ss_pred HhhhccccCCCC--hhHHHHHHHHHHHHHHHHHH
Q 009807 310 MVFAPNMTQMSD--PLTALMYAVQVMNFLKTLII 341 (525)
Q Consensus 310 iVFaP~Llr~~d--~~~~l~~~~~v~~~l~~LI~ 341 (525)
+||||+|+|+.. +...+.....++.+++.||.
T Consensus 160 ivf~P~llr~~~~~~~~~~~~~~~~~~~~~~lI~ 193 (199)
T cd04390 160 TVFGPNILRPKVEDPATIMEGTPQIQQLMTVMIS 193 (199)
T ss_pred HHhccccCCCCCCCHHHHHhccHHHHHHHHHHHH
Confidence 999999999864 34444444555545544443
No 4
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-38 Score=308.40 Aligned_cols=176 Identities=19% Similarity=0.273 Sum_probs=149.6
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC---CCCCChhhhhHHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV---PDNIDVHCLAGLIK 241 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~---~~~~Dvh~vAslLK 241 (525)
|||+|+.+. .+.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||.|.. ...+|+|+||++||
T Consensus 1 FGv~l~~l~---~~~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK 76 (200)
T cd04408 1 FGVDFSQLP---RDFPEEVPFVVVRCTAEI-ENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLK 76 (200)
T ss_pred CCCCHHHHH---HhCCCCCChHHHHHHHHH-HHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHH
Confidence 999999984 356788999999999999 78999999999999999999999999999863 35789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhhh-------------------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCC
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQS-------------------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNK 302 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~~-------------------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~Nk 302 (525)
.|||+||+||||+++|+.|+++.+ .+.++.++..||+.|+.+|.||+.||++|+++++.||
T Consensus 77 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~Nk 156 (200)
T cd04408 77 HFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNK 156 (200)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999987532 3457889999999999999999999999999999999
Q ss_pred CChhhhHHhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009807 303 MNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTL 344 (525)
Q Consensus 303 Mt~~NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll 344 (525)
|++.|||+||||+||+++......+.....+.+...+|+.+|
T Consensus 157 M~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li 198 (200)
T cd04408 157 MSPNNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLI 198 (200)
T ss_pred CCHhHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHh
Confidence 999999999999999987643322322223334444444443
No 5
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=2.1e-38 Score=305.63 Aligned_cols=154 Identities=25% Similarity=0.436 Sum_probs=139.0
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcC-CCC-----CCCChhhhhH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRG-MVP-----DNIDVHCLAG 238 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g-~~~-----~~~Dvh~vAs 238 (525)
||++|+.+.. +.+..||.+|.+|++|| +++|+++|||||++|+..+|+++++.||++ ... ...|+|+||+
T Consensus 1 FG~~L~~~~~---~~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 76 (194)
T cd04372 1 YGCDLTTLVK---AHNTQRPMVVDMCIREI-EARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG 76 (194)
T ss_pred CCCChHHHHH---HcCCCCChHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHH
Confidence 9999999843 45678999999999999 789999999999999999999999999974 321 1348999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHh
Q 009807 239 LIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMV 311 (525)
Q Consensus 239 lLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiV 311 (525)
+||.|||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+|
T Consensus 77 lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaiv 156 (194)
T cd04372 77 ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIV 156 (194)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 99999999999999999999998864 33468899999999999999999999999999999999999999999
Q ss_pred hhccccCCCCh
Q 009807 312 FAPNMTQMSDP 322 (525)
Q Consensus 312 FaP~Llr~~d~ 322 (525)
|||+|+++++.
T Consensus 157 f~P~Ll~~~~~ 167 (194)
T cd04372 157 FGPTLMRPPED 167 (194)
T ss_pred HhcccCCCCCc
Confidence 99999998763
No 6
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.3e-38 Score=303.84 Aligned_cols=171 Identities=29% Similarity=0.478 Sum_probs=147.3
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC---CCCCCChhhhhHHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM---VPDNIDVHCLAGLIK 241 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~---~~~~~Dvh~vAslLK 241 (525)
|||+|+.+. ..+..||.+|.+|++|| +++|+++|||||++|+..+++.|++.||.|. ..+.+|+|+||++||
T Consensus 1 FGv~L~~~~----~~~~~vP~il~~~i~~l-~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04407 1 FGVRVGSLT----SNKTSVPIVLEKLLEHV-EMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLK 75 (186)
T ss_pred CCCcHHHHH----hCCCCCCcHHHHHHHHH-HHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHH
Confidence 999999983 25678999999999999 7999999999999999999999999999873 235789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhc
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAP 314 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP 314 (525)
.|||+||+||||+++|+.|+.+. +..+++.++..||+.|+.+|+||+.||++|+++++.|||++.|||+||||
T Consensus 76 ~flReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP 155 (186)
T cd04407 76 QWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhc
Confidence 99999999999999999998763 34568899999999999999999999999999999999999999999999
Q ss_pred cccCCCC---hhHHHHHHHHHHHHHHHHH
Q 009807 315 NMTQMSD---PLTALMYAVQVMNFLKTLI 340 (525)
Q Consensus 315 ~Llr~~d---~~~~l~~~~~v~~~l~~LI 340 (525)
+|+|+++ +...+....+...+++.||
T Consensus 156 ~Ll~~~~~~d~~~~~~~~~~~~~~v~~li 184 (186)
T cd04407 156 CLLRCPDSSDPLTSMKDVAKTTTCVEMLI 184 (186)
T ss_pred cccCCCCCCCHHHHHHhhhhhHHHHHHHh
Confidence 9999764 3344444444443443333
No 7
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-38 Score=305.57 Aligned_cols=186 Identities=23% Similarity=0.311 Sum_probs=156.0
Q ss_pred CCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC-----CCCChhhh
Q 009807 162 ANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP-----DNIDVHCL 236 (525)
Q Consensus 162 ~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~-----~~~Dvh~v 236 (525)
+++||+||+++.. ..+..||.+|.+|+.|| +++|+++|||||++|+..+++.+++.+|.|.+. ...|+|+|
T Consensus 2 ~~~FG~~L~~~~~---~~~~~iP~~v~~~i~~L-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~v 77 (203)
T cd04386 2 KPVFGTPLEEHLK---RTGREIALPIEACVMCL-LETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAV 77 (203)
T ss_pred CCcCCCCHHHHHH---HcCCCCCHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHH
Confidence 4799999999842 35668999999999999 688999999999999999999999999999642 35699999
Q ss_pred hHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807 237 AGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA 309 (525)
Q Consensus 237 AslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA 309 (525)
|++||.|||+||+||+|.++|+.|+.+. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||+++|||
T Consensus 78 a~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLa 157 (203)
T cd04386 78 ASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIA 157 (203)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHH
Confidence 9999999999999999999999998863 345688999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009807 310 MVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSL 351 (525)
Q Consensus 310 iVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~i 351 (525)
+||||+|+++++.....+.+.........+|+.+|.+++.+|
T Consensus 158 i~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF 199 (203)
T cd04386 158 IVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFF 199 (203)
T ss_pred HHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhC
Confidence 999999999876543333333333344555555555555544
No 8
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-38 Score=301.68 Aligned_cols=178 Identities=31% Similarity=0.472 Sum_probs=157.8
Q ss_pred cccchhhhhhhhcC--CCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC--CCCChhhhhHHH
Q 009807 165 FGVSTESMQLSFDS--RGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP--DNIDVHCLAGLI 240 (525)
Q Consensus 165 FGv~Le~l~~~~~~--~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~--~~~Dvh~vAslL 240 (525)
||++|++++.+... .+..||.+|..|+++|++.+|+++|||||++|+..+++++++.+|.|.++ ...|+|++|++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 99999998654322 25689999999999997889999999999999999999999999999764 467999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHh-hhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhc--ccCCCChhhhHHhhhcccc
Q 009807 241 KAWFRELPTGVLDSLSPEQVMQA-QSEEECARLVRLLPPTEAALLDWAINLMADVAQME--HFNKMNARNVAMVFAPNMT 317 (525)
Q Consensus 241 K~fLReLPePLlp~~l~~~ll~~-~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s--~~NkMt~~NLAiVFaP~Ll 317 (525)
|.|||+||+||+|.++|+.++.+ .+.+.+++++.+||+.|+.+|.||+.||++|++++ +.|||+++|||+||||+|+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~ 160 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNIL 160 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccC
Confidence 99999999999999999999986 46778999999999999999999999999999765 6899999999999999999
Q ss_pred CCC--ChhHHHHHHHHHHHHHHHHHHH
Q 009807 318 QMS--DPLTALMYAVQVMNFLKTLIIK 342 (525)
Q Consensus 318 r~~--d~~~~l~~~~~v~~~l~~LI~~ 342 (525)
+++ ++...+.+..+.+.+++.||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 161 RCTSDDPRVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred CCCCCCHHHHHHccHHHHHHHHHHhcC
Confidence 974 4556667777888888888864
No 9
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.8e-38 Score=304.43 Aligned_cols=155 Identities=26% Similarity=0.483 Sum_probs=140.8
Q ss_pred CccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC------CCCChhhh
Q 009807 163 NVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP------DNIDVHCL 236 (525)
Q Consensus 163 ~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~------~~~Dvh~v 236 (525)
++||++|+++.. +.+..||.+|.+|++|| +++|+ +|||||++|+..++++|++.||+|..+ ...|+|+|
T Consensus 1 ~vFG~~L~~~~~---~~g~~iP~il~~~i~~l-~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~v 75 (195)
T cd04384 1 RVFGCDLTEHLL---NSGQDVPQVLKSCTEFI-EKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSV 75 (195)
T ss_pred CcCCccHHHHHH---HcCCCCChHHHHHHHHH-HHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHH
Confidence 489999999843 45788999999999999 78999 699999999999999999999998643 23699999
Q ss_pred hHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807 237 AGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA 309 (525)
Q Consensus 237 AslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA 309 (525)
|++||.|||+||+||||+.+|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus 76 a~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 155 (195)
T cd04384 76 SSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLA 155 (195)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhh
Confidence 9999999999999999999999998863 335678899999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCh
Q 009807 310 MVFAPNMTQMSDP 322 (525)
Q Consensus 310 iVFaP~Llr~~d~ 322 (525)
+||||+|+++++.
T Consensus 156 ivf~P~L~~~~~~ 168 (195)
T cd04384 156 IVWAPNLLRSKQI 168 (195)
T ss_pred HhhhhhcCCCCcc
Confidence 9999999998863
No 10
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-37 Score=298.99 Aligned_cols=156 Identities=22% Similarity=0.380 Sum_probs=141.8
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC-----CCCChhhhhHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP-----DNIDVHCLAGL 239 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~-----~~~Dvh~vAsl 239 (525)
||+||+++. .+.+..||.+|.+|++|| +.+|+++|||||++|+...+++|+..+|.|... ...|+|++|++
T Consensus 1 FGv~L~~~~---~~~~~~iP~~l~~~i~~l-~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (187)
T cd04403 1 FGCHLEALC---QRENSTVPKFVRLCIEAV-EKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGA 76 (187)
T ss_pred CCCChHHHH---HHcCCCCChHHHHHHHHH-HHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHH
Confidence 999999984 345778999999999999 789999999999999999999999999987542 24699999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhh
Q 009807 240 IKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVF 312 (525)
Q Consensus 240 LK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVF 312 (525)
||.|||+||+||||+++|+.|+++. +.+.++.++..||+.|+.+|.||+.||++|+++++.|||++.|||+||
T Consensus 77 LK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf 156 (187)
T cd04403 77 LKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVF 156 (187)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhc
Confidence 9999999999999999999998863 345688999999999999999999999999999999999999999999
Q ss_pred hccccCCCChhH
Q 009807 313 APNMTQMSDPLT 324 (525)
Q Consensus 313 aP~Llr~~d~~~ 324 (525)
||+|+|++....
T Consensus 157 ~P~ll~~~~~~~ 168 (187)
T cd04403 157 GPTLLRPEQETG 168 (187)
T ss_pred cccccCCCCcch
Confidence 999999887543
No 11
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-37 Score=304.31 Aligned_cols=157 Identities=29% Similarity=0.421 Sum_probs=140.8
Q ss_pred ccccchhhhhhhhc--CCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-----CCCCCChhhh
Q 009807 164 VFGVSTESMQLSFD--SRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM-----VPDNIDVHCL 236 (525)
Q Consensus 164 vFGv~Le~l~~~~~--~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~-----~~~~~Dvh~v 236 (525)
|||+||+++..... ..+..||.+|.+|++|| +++|+++|||||++|+..+++.|++.+|.+. ..+.+|+|++
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~v 79 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKL-EERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDA 79 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHH
Confidence 79999999865432 24678999999999999 6899999999999999999999999999763 2356899999
Q ss_pred hHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807 237 AGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA 309 (525)
Q Consensus 237 AslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA 309 (525)
|++||.|||+||+||+|.++|+.|+.+. +.+.++.++..||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus 80 a~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 80 ASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999998864 234577889999999999999999999999999999999999999
Q ss_pred HhhhccccCCCC
Q 009807 310 MVFAPNMTQMSD 321 (525)
Q Consensus 310 iVFaP~Llr~~d 321 (525)
+||||+||++..
T Consensus 160 ivfaP~l~~~~~ 171 (216)
T cd04391 160 MIMAPNLFPPRG 171 (216)
T ss_pred HHhccccCCCCC
Confidence 999999999754
No 12
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-37 Score=305.73 Aligned_cols=156 Identities=24% Similarity=0.378 Sum_probs=141.7
Q ss_pred CCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC---CCCCCChhhhhH
Q 009807 162 ANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM---VPDNIDVHCLAG 238 (525)
Q Consensus 162 ~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~---~~~~~Dvh~vAs 238 (525)
+++||+||+.+. ++.|..||.+|.+|++|| +.+|+++|||||++|+..+++.|++.+|.+. ..+..++|+||+
T Consensus 2 ~~vFGvpL~~~~---~r~g~~IP~~i~~~i~~L-~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~ 77 (220)
T cd04375 2 KNVFGVPLLVNL---QRTGQPLPRSIQQAMRWL-RNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVAD 77 (220)
T ss_pred CCEecCcHHHHH---hhcCCCCChHHHHHHHHH-HHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHH
Confidence 579999998773 356788999999999999 7899999999999999999999999999863 235679999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHh
Q 009807 239 LIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMV 311 (525)
Q Consensus 239 lLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiV 311 (525)
+||.|||+||+||||.++|+.|+++. +.+.++.++..||+.|+.+|+||+.||++|+++++.|||++.|||+|
T Consensus 78 lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (220)
T cd04375 78 MLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVC 157 (220)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 99999999999999999999998752 34568889999999999999999999999999999999999999999
Q ss_pred hhccccCCCC
Q 009807 312 FAPNMTQMSD 321 (525)
Q Consensus 312 FaP~Llr~~d 321 (525)
|||+||+...
T Consensus 158 faP~L~~~~~ 167 (220)
T cd04375 158 LAPSLFHLNT 167 (220)
T ss_pred HhhhhcCCCC
Confidence 9999999753
No 13
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-37 Score=301.94 Aligned_cols=157 Identities=31% Similarity=0.418 Sum_probs=140.6
Q ss_pred ccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC-CCCChhhhhHHHHH
Q 009807 164 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP-DNIDVHCLAGLIKA 242 (525)
Q Consensus 164 vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~-~~~Dvh~vAslLK~ 242 (525)
|||+||+.+.......+..||.+|.+|++|| ++ |+++|||||++|+..+++.|++.+|+|... ..+++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l-~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFL-LD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHH-HH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHH
Confidence 7999999986543345678999999999999 44 699999999999999999999999998643 46789999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhcc
Q 009807 243 WFRELPTGVLDSLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPN 315 (525)
Q Consensus 243 fLReLPePLlp~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~ 315 (525)
|||+||+||+|+++|+.|+.+.. .+.++.++.+||..|+.+|.||+.||++|++|++.|||++.|||+||||+
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~ 158 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPN 158 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcce
Confidence 99999999999999999988742 23467788999999999999999999999999999999999999999999
Q ss_pred ccCCCCh
Q 009807 316 MTQMSDP 322 (525)
Q Consensus 316 Llr~~d~ 322 (525)
||++.+.
T Consensus 159 L~~~~~~ 165 (202)
T cd04394 159 LFQSEEG 165 (202)
T ss_pred eecCCCc
Confidence 9998764
No 14
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=1.2e-37 Score=302.52 Aligned_cols=154 Identities=21% Similarity=0.334 Sum_probs=140.9
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC---CCCCChhhhhHHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV---PDNIDVHCLAGLIK 241 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~---~~~~Dvh~vAslLK 241 (525)
||++|+.+.. +.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.|+.|.. ..++|+|+||++||
T Consensus 1 FG~~L~~~~~---~~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK 76 (203)
T cd04378 1 FGVDFSQVPR---DFPDEVPFIIKKCTSEI-ENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLK 76 (203)
T ss_pred CCCChHHHHH---HCCCCCChHHHHHHHHH-HhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH
Confidence 9999999843 35678999999999999 78999999999999999999999999998853 35789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhhh---------------------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhccc
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQS---------------------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHF 300 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~~---------------------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~ 300 (525)
+|||+||+||+|+++|+.|+.+.+ .+.++.++..||+.|+.+|+||+.||++|+++++.
T Consensus 77 ~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 156 (203)
T cd04378 77 LFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEE 156 (203)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987642 24578899999999999999999999999999999
Q ss_pred CCCChhhhHHhhhccccCCCCh
Q 009807 301 NKMNARNVAMVFAPNMTQMSDP 322 (525)
Q Consensus 301 NkMt~~NLAiVFaP~Llr~~d~ 322 (525)
|||++.|||+||||+||+++..
T Consensus 157 NkM~~~NLaivf~P~Ll~~~~~ 178 (203)
T cd04378 157 NKMSPNNLGIVFGPTLIRPRPG 178 (203)
T ss_pred hCCCHHHhhhhhccccCCCCCC
Confidence 9999999999999999998864
No 15
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-37 Score=303.54 Aligned_cols=153 Identities=20% Similarity=0.347 Sum_probs=139.4
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC---CCCCChhhhhHHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV---PDNIDVHCLAGLIK 241 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~---~~~~Dvh~vAslLK 241 (525)
||+||+++.. +.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||.|.. .+++|+|+||++||
T Consensus 1 FG~~L~~~~~---~~~~~iP~il~~ci~~i-e~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK 76 (211)
T cd04409 1 FGADFAQVAK---KSPDGIPFIIKKCTSEI-ESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLK 76 (211)
T ss_pred CCCChHHHHH---hCCCCCCcHHHHHHHHH-HHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHH
Confidence 9999999843 34568999999999999 78999999999999999999999999999853 35789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhhh-----------------------------HHHHHHHHHhCChhhHHHHHHHHHHHH
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQS-----------------------------EEECARLVRLLPPTEAALLDWAINLMA 292 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~~-----------------------------~e~l~~ll~~LP~~nr~lL~~Li~fL~ 292 (525)
.|||+||+||||.++|+.|+.+.+ ...++.++.+||+.|+.+|+||+.||+
T Consensus 77 ~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~ 156 (211)
T cd04409 77 LYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLH 156 (211)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987542 135788999999999999999999999
Q ss_pred HHhhhcccCCCChhhhHHhhhccccCCCC
Q 009807 293 DVAQMEHFNKMNARNVAMVFAPNMTQMSD 321 (525)
Q Consensus 293 ~V~~~s~~NkMt~~NLAiVFaP~Llr~~d 321 (525)
+|+++++.|||++.|||+||||+||++..
T Consensus 157 ~V~~~s~~NkM~~~NLAivf~P~Llrp~~ 185 (211)
T cd04409 157 RVSEQAEENKMSASNLGIIFGPTLIRPRP 185 (211)
T ss_pred HHHcccccCCCChHHhhhhccccccCCCC
Confidence 99999999999999999999999999865
No 16
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-37 Score=305.79 Aligned_cols=159 Identities=23% Similarity=0.282 Sum_probs=139.1
Q ss_pred ccccchhhhhhhhcC------------CCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-----
Q 009807 164 VFGVSTESMQLSFDS------------RGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM----- 226 (525)
Q Consensus 164 vFGv~Le~l~~~~~~------------~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~----- 226 (525)
||||+|++....... ....||.+|.+|++|| +++|+++|||||++|+..+++.|++.||.+.
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l-~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~ 79 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYL-KENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKS 79 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHH-HHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCc
Confidence 799999987432221 1247999999999999 7899999999999999999999999999863
Q ss_pred -CCCCCChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh------------------------hHHHHHHHHHhCChhhH
Q 009807 227 -VPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ------------------------SEEECARLVRLLPPTEA 281 (525)
Q Consensus 227 -~~~~~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~~------------------------~~e~l~~ll~~LP~~nr 281 (525)
..+.+|+|++|++||+|||+||+||||.++|+.|+.+. +++.++.++.+||+.|+
T Consensus 80 ~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 80 FDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 23578999999999999999999999999999987532 22346789999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChh
Q 009807 282 ALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPL 323 (525)
Q Consensus 282 ~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~ 323 (525)
.+|+||+.||++|+++++.|||+++|||+||||+||+.++..
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~ 201 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE 201 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc
Confidence 999999999999999999999999999999999999987643
No 17
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.7e-37 Score=297.78 Aligned_cols=153 Identities=26% Similarity=0.433 Sum_probs=139.1
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC---CCCCCChhhhhHHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM---VPDNIDVHCLAGLIK 241 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~---~~~~~Dvh~vAslLK 241 (525)
||++|+.+. ..+..||.+|.+|++|| +++|+++|||||++|+..+++.|++.||.|. ..+.+|+|+||++||
T Consensus 1 FGv~L~~l~----~~~~~iP~ii~~~i~~l-~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04406 1 FGVELSRLT----SEDRSVPLVVEKLINYI-EMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFK 75 (186)
T ss_pred CCCchHHHH----HCCCCCCcHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHH
Confidence 999999873 24568999999999999 7899999999999999999999999999864 235789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhc
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAP 314 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP 314 (525)
.|||+||+||||.++|+.|+++.. ...++.++..||+.|+.+|.||+.||++|+.+++.|||++.|||+||||
T Consensus 76 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P 155 (186)
T cd04406 76 QWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcc
Confidence 999999999999999999988743 2346788999999999999999999999999999999999999999999
Q ss_pred cccCCCCh
Q 009807 315 NMTQMSDP 322 (525)
Q Consensus 315 ~Llr~~d~ 322 (525)
+|++.++.
T Consensus 156 ~ll~~p~~ 163 (186)
T cd04406 156 CILRCPDT 163 (186)
T ss_pred cccCCCCC
Confidence 99998753
No 18
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.2e-37 Score=297.25 Aligned_cols=185 Identities=25% Similarity=0.376 Sum_probs=155.5
Q ss_pred CCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC--CCC-Chhhhh
Q 009807 161 SANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP--DNI-DVHCLA 237 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~--~~~-Dvh~vA 237 (525)
++.+||++|+.+... ...+..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|+|... +.+ |+|++|
T Consensus 2 ~~~~FGv~L~~~~~~-~~~~~~iP~il~~~i~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va 79 (195)
T cd04404 2 PTQQFGVSLQFLKEK-NPEQEPIPPVVRETVEYL-QAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPA 79 (195)
T ss_pred CCCcCCCcHHHHHHh-CCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHH
Confidence 357999999998542 233478999999999999 679999999999999999999999999998543 344 999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHh------hhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHh
Q 009807 238 GLIKAWFRELPTGVLDSLSPEQVMQA------QSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMV 311 (525)
Q Consensus 238 slLK~fLReLPePLlp~~l~~~ll~~------~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiV 311 (525)
++||.|||+||+||+|.++|+.++.+ .+.+.++.++.+||+.|+.+|.||+.||++|+++++.|+|++.|||+|
T Consensus 80 ~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 80 VILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 99999999999999999999999875 344678899999999999999999999999999999999999999999
Q ss_pred hhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009807 312 FAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSL 351 (525)
Q Consensus 312 FaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~i 351 (525)
|||+|+|++++...+.....+. .+|..+|.+++++|
T Consensus 160 faP~l~~~~~~~~~l~~~~~~~----~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDASMSLSAINPIN----TFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcccCHHHHHHHH----HHHHHHHHhHHhhC
Confidence 9999999987655454444444 44444444455443
No 19
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.8e-37 Score=295.75 Aligned_cols=179 Identities=26% Similarity=0.358 Sum_probs=152.2
Q ss_pred ccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC--CCCCChhhhhHHHH
Q 009807 164 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV--PDNIDVHCLAGLIK 241 (525)
Q Consensus 164 vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~--~~~~Dvh~vAslLK 241 (525)
+||+||+.+. . +..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|.|.. .+.+|+|++|++||
T Consensus 1 ~FG~~L~~~~---~--~~~vP~~i~~~i~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK 74 (192)
T cd04402 1 LFGQPLSNIC---E--DDNLPKPILDMLSLL-YQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLK 74 (192)
T ss_pred CCCCcHHHHh---C--CCCCCHHHHHHHHHH-HHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHH
Confidence 6999999983 2 678999999999999 67899999999999999999999999999964 36789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhc
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAP 314 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP 314 (525)
+|||+||+||+|.+.|+.|+.+. +.+.++.++.+||..|+.+|.||+.||++|+.+++.|||+++|||+||||
T Consensus 75 ~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP 154 (192)
T cd04402 75 DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAP 154 (192)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccc
Confidence 99999999999999999998763 34568899999999999999999999999999999999999999999999
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009807 315 NMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSL 351 (525)
Q Consensus 315 ~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~i 351 (525)
+||++++.... ....+..+..++..+|.+++++|
T Consensus 155 ~l~~~~~~~~~---~~~~~~~~~~~~~~LI~~~~~IF 188 (192)
T cd04402 155 SLLWPPASSEL---QNEDLKKVTSLVQFLIENCQEIF 188 (192)
T ss_pred cccCCCCccHH---HHHHHHhhhHHHHHHHHhHHHhC
Confidence 99999875411 11222233455555555555555
No 20
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=3.2e-37 Score=298.29 Aligned_cols=170 Identities=23% Similarity=0.371 Sum_probs=146.9
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC-----CCCCChhhhhHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV-----PDNIDVHCLAGL 239 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~-----~~~~Dvh~vAsl 239 (525)
||++|..+. .+.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||.|.. .+..|+|+||++
T Consensus 1 FGv~L~~~~---~r~~~~IP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (196)
T cd04387 1 FGVKISTVT---KRERSKVPYIVRQCVEEV-ERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGT 76 (196)
T ss_pred CCCCHHHHH---HhcCCCCChHHHHHHHHH-HHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence 999999873 346678999999999999 78999999999999999999999999998742 256899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhh
Q 009807 240 IKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVF 312 (525)
Q Consensus 240 LK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVF 312 (525)
||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||
T Consensus 77 LK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 156 (196)
T cd04387 77 LKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVF 156 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 9999999999999999999998863 334578999999999999999999999999999999999999999999
Q ss_pred hccccCCCCh----hHHHHHHHHHHHHHHH
Q 009807 313 APNMTQMSDP----LTALMYAVQVMNFLKT 338 (525)
Q Consensus 313 aP~Llr~~d~----~~~l~~~~~v~~~l~~ 338 (525)
||+|++++.. ...++...+.++++..
T Consensus 157 ~P~Llr~~~~~~~~~~~~~~~~~~~~~~~~ 186 (196)
T cd04387 157 GPTLLRPSEKESKIPTNTMTDSWSLEVMSQ 186 (196)
T ss_pred ccccCCCCcccccccccccchhHHHHHHHH
Confidence 9999998753 2334444444444433
No 21
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=3.8e-37 Score=295.65 Aligned_cols=176 Identities=28% Similarity=0.489 Sum_probs=152.5
Q ss_pred CccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC---CCCChhhhhHH
Q 009807 163 NVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP---DNIDVHCLAGL 239 (525)
Q Consensus 163 ~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~---~~~Dvh~vAsl 239 (525)
++||++|+++.. .+..+..||.+|..|++|| +++|+++|||||++|+..+++.+++.+|.|... .++|+|++|++
T Consensus 1 ~~FGv~L~~l~~-~~~~~~~vP~il~~~i~~l-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~ 78 (189)
T cd04393 1 KVFGVPLQELQQ-AGQPENGVPAVVRHIVEYL-EQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASL 78 (189)
T ss_pred CcccccHHHHHh-ccCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHH
Confidence 489999999843 2334678999999999999 679999999999999999999999999998643 35899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHhhh--------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHh
Q 009807 240 IKAWFRELPTGVLDSLSPEQVMQAQS--------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMV 311 (525)
Q Consensus 240 LK~fLReLPePLlp~~l~~~ll~~~~--------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiV 311 (525)
||.|||+||+||+|.+.|+.|+++.+ ...++.++..||+.|+.+|.||+.||++|+++++.|+|++.|||+|
T Consensus 79 lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~v 158 (189)
T cd04393 79 LRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAV 158 (189)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhh
Confidence 99999999999999999999987632 3468899999999999999999999999999999999999999999
Q ss_pred hhccccCCCChhHHHHHHHHHHHHHHHHH
Q 009807 312 FAPNMTQMSDPLTALMYAVQVMNFLKTLI 340 (525)
Q Consensus 312 FaP~Llr~~d~~~~l~~~~~v~~~l~~LI 340 (525)
|||+||+.++....+....-+..+++.||
T Consensus 159 f~P~l~~~~~~~~~~~~~~~~~~~~~~li 187 (189)
T cd04393 159 FGPDVFHVYTDVEDMKEQEICSRIMAKLL 187 (189)
T ss_pred ccCceeCCCCCcccHHHHHHHHHHHHHHh
Confidence 99999998876665555444444555554
No 22
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=3.7e-37 Score=294.30 Aligned_cols=154 Identities=26% Similarity=0.418 Sum_probs=139.6
Q ss_pred cccchhhhhhhhc-CCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC--CCCChhhhhHHHH
Q 009807 165 FGVSTESMQLSFD-SRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP--DNIDVHCLAGLIK 241 (525)
Q Consensus 165 FGv~Le~l~~~~~-~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~--~~~Dvh~vAslLK 241 (525)
||+||++++.+.. ..|..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|... +++|+|+||++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l-~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYV-EKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHH-HHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHH
Confidence 9999999854322 23678999999999999 789999999999999999999999999998654 5789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhc
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAP 314 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP 314 (525)
.|||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||.+|+++++.|||++.|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999998753 34568999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 009807 315 NMTQM 319 (525)
Q Consensus 315 ~Llr~ 319 (525)
+|+.+
T Consensus 160 ~l~~~ 164 (182)
T cd04381 160 TVQIS 164 (182)
T ss_pred cccCc
Confidence 99753
No 23
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.6e-37 Score=292.97 Aligned_cols=171 Identities=21% Similarity=0.406 Sum_probs=148.0
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC----CCCChhhhhHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP----DNIDVHCLAGLI 240 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~----~~~Dvh~vAslL 240 (525)
||+||++++. .+..||.+|.+|++|| +++|+++|||||++|+..+++++++.||+|... .++|+|+||++|
T Consensus 1 FG~pL~~~~~----~~~~IP~~l~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 75 (185)
T cd04373 1 FGVPLANVVT----SEKPIPIFLEKCVEFI-EATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGAL 75 (185)
T ss_pred CCCchHHHHh----CCCCCCcHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHH
Confidence 9999999853 4778999999999999 679999999999999999999999999987432 367999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhh
Q 009807 241 KAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFA 313 (525)
Q Consensus 241 K~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFa 313 (525)
|+|||+||+||+|+++|+.|+++. +.+.++.++..||+.|+.+|.||+.||++|+++++.|||+++|||+|||
T Consensus 76 K~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~ 155 (185)
T cd04373 76 KSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFW 155 (185)
T ss_pred HHHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHc
Confidence 999999999999999999998863 3456889999999999999999999999999999999999999999999
Q ss_pred ccccCCCC-hhHHHHHHHHHHHHHHHHHHHHH
Q 009807 314 PNMTQMSD-PLTALMYAVQVMNFLKTLIIKTL 344 (525)
Q Consensus 314 P~Llr~~d-~~~~l~~~~~v~~~l~~LI~~ll 344 (525)
|+|+++.. ...++. ....++.+|+++|
T Consensus 156 P~L~~~~~~~~~~~~----~~~~~q~~i~~~i 183 (185)
T cd04373 156 PTLMRPDFTSMEALS----ATRIYQTIIETFI 183 (185)
T ss_pred cccCCCCCCCHHHHH----ccHHHHHHHHHHh
Confidence 99999765 334443 2334556665554
No 24
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-36 Score=296.20 Aligned_cols=156 Identities=23% Similarity=0.407 Sum_probs=138.9
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC---C--C-CCChhhhhH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV---P--D-NIDVHCLAG 238 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~---~--~-~~Dvh~vAs 238 (525)
||+||+.+..+ +..+..||.+|.+|++|| +.+|+++|||||++|+..+++.|++.||++.. . + ..|+|+||+
T Consensus 1 FGvpL~~l~~r-e~~~~~IP~iv~~ci~~L-~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~ 78 (207)
T cd04379 1 FGVPLSRLVER-EGESRDVPIVLQKCVQEI-ERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITG 78 (207)
T ss_pred CCCChHHHHhh-cCCCCCcChHHHHHHHHH-HHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHH
Confidence 99999998543 335678999999999999 68999999999999999999999999998642 1 1 248999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHhhh----------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhh
Q 009807 239 LIKAWFRELPTGVLDSLSPEQVMQAQS----------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNV 308 (525)
Q Consensus 239 lLK~fLReLPePLlp~~l~~~ll~~~~----------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NL 308 (525)
+||.|||+||+||||+++|+.|+++.. .+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 79 lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NL 158 (207)
T cd04379 79 VLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNL 158 (207)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHh
Confidence 999999999999999999999987632 2346788999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCCh
Q 009807 309 AMVFAPNMTQMSDP 322 (525)
Q Consensus 309 AiVFaP~Llr~~d~ 322 (525)
|+||||+||++++.
T Consensus 159 Aivf~P~Ll~~~~~ 172 (207)
T cd04379 159 AVCFGPVLMFCSQE 172 (207)
T ss_pred HHhhccccCCCCcc
Confidence 99999999998763
No 25
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-36 Score=291.98 Aligned_cols=156 Identities=29% Similarity=0.468 Sum_probs=140.4
Q ss_pred ccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC------CCCChhhhh
Q 009807 164 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP------DNIDVHCLA 237 (525)
Q Consensus 164 vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~------~~~Dvh~vA 237 (525)
+|||||+++.. ...+..||.+|.+|+.+| +.+|+++|||||++|+..++++|++.+|+|... +..|+|++|
T Consensus 1 ~FGvpl~~~~~--~~~~~~vP~iv~~~~~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va 77 (196)
T cd04395 1 TFGVPLDDCPP--SSENPYVPLIVEVCCNIV-EARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVS 77 (196)
T ss_pred CCCccHHHHhc--ccCCCCCChHHHHHHHHH-HHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHH
Confidence 59999998642 233468999999999999 799999999999999999999999999998532 346899999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHH
Q 009807 238 GLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAM 310 (525)
Q Consensus 238 slLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAi 310 (525)
++||+|||+||+||||.+.|+.|+.+. +.+.++.++.+||+.|+.+|.||+.||++|+.+++.|+|++.|||+
T Consensus 78 ~llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi 157 (196)
T cd04395 78 SLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAI 157 (196)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHH
Confidence 999999999999999999999998763 2346889999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCh
Q 009807 311 VFAPNMTQMSDP 322 (525)
Q Consensus 311 VFaP~Llr~~d~ 322 (525)
||||+|+|+++.
T Consensus 158 ~faP~l~r~~~~ 169 (196)
T cd04395 158 VFGPTLVRTSDD 169 (196)
T ss_pred hhccccCCCCCC
Confidence 999999998764
No 26
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-36 Score=295.75 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=137.8
Q ss_pred cccchhhhhhhhcCC--------CCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC----CCCCC
Q 009807 165 FGVSTESMQLSFDSR--------GNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV----PDNID 232 (525)
Q Consensus 165 FGv~Le~l~~~~~~~--------~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~----~~~~D 232 (525)
|||||+.+..+.... ...||.+|.+|++|| +++|+++|||||++|+..++++|++.||.|.. ....|
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~ 79 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAM-RQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKEN 79 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHH-HHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCc
Confidence 999999985443221 236999999999999 68899999999999999999999999998742 34679
Q ss_pred hhhhhHHHHHHHHhCCCCCCCCCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcc-----c
Q 009807 233 VHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEH-----F 300 (525)
Q Consensus 233 vh~vAslLK~fLReLPePLlp~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~-----~ 300 (525)
+|+||++||.|||+||+||+|.++|+.|+.+.+ ...++.++..||+.|+.+|+||+.||++|+.+++ .
T Consensus 80 ~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 80 PVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999999988742 2346778899999999999999999999998765 5
Q ss_pred CCCChhhhHHhhhccccCCCChh
Q 009807 301 NKMNARNVAMVFAPNMTQMSDPL 323 (525)
Q Consensus 301 NkMt~~NLAiVFaP~Llr~~d~~ 323 (525)
|||++.|||+||||+|+++....
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~ 182 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDN 182 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCC
Confidence 99999999999999999987653
No 27
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.9e-36 Score=289.00 Aligned_cols=155 Identities=28% Similarity=0.454 Sum_probs=141.0
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC---CCCCCChhhhhHHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM---VPDNIDVHCLAGLIK 241 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~---~~~~~Dvh~vAslLK 241 (525)
||++|+.+. ..+..||.+|..|++|| +.+|+++|||||++|+..+++++++.+|.|. ..+.+|+|+||++||
T Consensus 1 FG~~L~~~~----~~~~~vP~~l~~~~~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK 75 (186)
T cd04377 1 FGVSLSSLT----SEDRSVPLVLEKLLEHI-EMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLK 75 (186)
T ss_pred CCCCHHHHH----hCCCCCChHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHH
Confidence 999999884 24678999999999999 6899999999999999999999999999973 346789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhc
Q 009807 242 AWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAP 314 (525)
Q Consensus 242 ~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP 314 (525)
+|||+||+||||+++|+.|+.+. +...++.++..||+.|+.+|.||+.||++|+++++.|||++.|||+||||
T Consensus 76 ~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P 155 (186)
T cd04377 76 QWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAP 155 (186)
T ss_pred HHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhh
Confidence 99999999999999999998753 33567889999999999999999999999999999999999999999999
Q ss_pred cccCCCChhH
Q 009807 315 NMTQMSDPLT 324 (525)
Q Consensus 315 ~Llr~~d~~~ 324 (525)
+|+|+++..+
T Consensus 156 ~ll~~~~~~~ 165 (186)
T cd04377 156 CILRCPDTAD 165 (186)
T ss_pred HhcCCCCCCC
Confidence 9999886443
No 28
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-36 Score=288.59 Aligned_cols=154 Identities=26% Similarity=0.495 Sum_probs=139.9
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC------C--CCCChhhh
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV------P--DNIDVHCL 236 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~------~--~~~Dvh~v 236 (525)
||++|+++.. +.+..||.+|.+|++|| +.+|+++|||||++|+..+++.+++.+|+|.. + ...|+|+|
T Consensus 1 FG~~L~~~~~---~~~~~iP~~v~~~i~~l-~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~v 76 (192)
T cd04398 1 FGVPLEDLIL---REGDNVPNIVYQCIQAI-ENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSV 76 (192)
T ss_pred CCCChHHHHH---HcCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHH
Confidence 9999999843 45678999999999999 68999999999999999999999999998742 1 24599999
Q ss_pred hHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807 237 AGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA 309 (525)
Q Consensus 237 AslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA 309 (525)
|++||.|||+||+||+|.++|+.|+.+. +.+.++.++.+||..|+.+|.||+.||++|+.+++.|||++.|||
T Consensus 77 a~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLa 156 (192)
T cd04398 77 ASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLA 156 (192)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHH
Confidence 9999999999999999999999999863 335678899999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCh
Q 009807 310 MVFAPNMTQMSDP 322 (525)
Q Consensus 310 iVFaP~Llr~~d~ 322 (525)
+||||+|++.++.
T Consensus 157 ivf~P~l~~~~~~ 169 (192)
T cd04398 157 IIWGPTLMNAAPD 169 (192)
T ss_pred HHHhhhhCCCCcc
Confidence 9999999998875
No 29
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.4e-36 Score=286.59 Aligned_cols=157 Identities=27% Similarity=0.397 Sum_probs=137.6
Q ss_pred ccccchhhhhhhhcC--CCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC------CCCChhh
Q 009807 164 VFGVSTESMQLSFDS--RGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP------DNIDVHC 235 (525)
Q Consensus 164 vFGv~Le~l~~~~~~--~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~------~~~Dvh~ 235 (525)
|||+||++++..... .+..||.+|.+|++||.+.+++++|||||++|+...++.|++.++.|... +..|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999987543221 25689999999999995444589999999999999999999999987432 3579999
Q ss_pred hhHHHHHHHHhCCCCCCCCCCHHHHHHhh--------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhh
Q 009807 236 LAGLIKAWFRELPTGVLDSLSPEQVMQAQ--------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307 (525)
Q Consensus 236 vAslLK~fLReLPePLlp~~l~~~ll~~~--------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~N 307 (525)
||++||.|||+||+||+|.++|+.|..+. +...++.++.+||+.|+.+|+||+.||++|+.+++.||||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 99999999999999999999999997653 2346788999999999999999999999999999999999999
Q ss_pred hHHhhhccccCCC
Q 009807 308 VAMVFAPNMTQMS 320 (525)
Q Consensus 308 LAiVFaP~Llr~~ 320 (525)
||+||||+|+++.
T Consensus 161 La~vf~P~L~~~~ 173 (190)
T cd04400 161 VCIVFSPTLNIPA 173 (190)
T ss_pred hhhhcCCCCCCCH
Confidence 9999999998764
No 30
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.1e-35 Score=286.47 Aligned_cols=143 Identities=29% Similarity=0.477 Sum_probs=131.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC---CCCChhhhhHHHHHHHHhCCCCCCCCC
Q 009807 179 RGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP---DNIDVHCLAGLIKAWFRELPTGVLDSL 255 (525)
Q Consensus 179 ~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~---~~~Dvh~vAslLK~fLReLPePLlp~~ 255 (525)
.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||.|... +.+|+|+||++||.|||+||+||+|++
T Consensus 5 ~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~ 83 (206)
T cd04376 5 IARQVPRLVESCCQHL-EKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRE 83 (206)
T ss_pred CCCCCCHHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 4568999999999999 789999999999999999999999999998643 468999999999999999999999999
Q ss_pred CHHHHHHhhh------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcc-----------cCCCChhhhHHhhhccccC
Q 009807 256 SPEQVMQAQS------EEECARLVRLLPPTEAALLDWAINLMADVAQMEH-----------FNKMNARNVAMVFAPNMTQ 318 (525)
Q Consensus 256 l~~~ll~~~~------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~-----------~NkMt~~NLAiVFaP~Llr 318 (525)
+|+.|+.+.. .+.++.++.+||+.|+.+|.||+.||++|+++++ .|||++.|||+||||+|||
T Consensus 84 ~y~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 84 LYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999998643 3567889999999999999999999999999986 7999999999999999999
Q ss_pred CCCh
Q 009807 319 MSDP 322 (525)
Q Consensus 319 ~~d~ 322 (525)
++++
T Consensus 164 ~~~~ 167 (206)
T cd04376 164 KQKS 167 (206)
T ss_pred CCCC
Confidence 8764
No 31
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.8e-35 Score=280.19 Aligned_cols=170 Identities=26% Similarity=0.395 Sum_probs=148.2
Q ss_pred ccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-----CCCCCChhhhhHHH
Q 009807 166 GVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM-----VPDNIDVHCLAGLI 240 (525)
Q Consensus 166 Gv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~-----~~~~~Dvh~vAslL 240 (525)
|.+|+..+ ..+..||.+|.+|++|| +++|+++|||||++|+..++++|++.|+.+. .++.+|+|+||++|
T Consensus 2 ~~~l~~~~----~~~~~iP~~v~~~i~~l-~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~ll 76 (184)
T cd04385 2 GPALEDQQ----LTDNDIPVIVDKCIDFI-TQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVL 76 (184)
T ss_pred CccHHHhh----hCCCCCChHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHH
Confidence 77787763 45688999999999999 6899999999999999999999999998753 13578999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhh
Q 009807 241 KAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFA 313 (525)
Q Consensus 241 K~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFa 313 (525)
|.|||+||+||||+++|+.|+.+. +...++.++..||+.|+.+|.+|+.||++|+++++.|||+++|||+|||
T Consensus 77 K~yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~ 156 (184)
T cd04385 77 KRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFG 156 (184)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhc
Confidence 999999999999999999998864 3346889999999999999999999999999999999999999999999
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 009807 314 PNMTQMSDPLTALMYAVQVMNFLKTLIIK 342 (525)
Q Consensus 314 P~Llr~~d~~~~l~~~~~v~~~l~~LI~~ 342 (525)
|+||++++. ..+.....+++++.||.+
T Consensus 157 P~ll~~~~~--~~~~~~~~~~v~~~Li~~ 183 (184)
T cd04385 157 PTLFQTDEH--SVGQTSHEVKVIEDLIDN 183 (184)
T ss_pred cccCCCCcc--chhHHHHHHHHHHHHHhc
Confidence 999998874 344555566667777654
No 32
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=7.1e-35 Score=282.26 Aligned_cols=171 Identities=19% Similarity=0.313 Sum_probs=139.0
Q ss_pred hhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcC---CCCCCCChhhhhHHHHHHHHhC
Q 009807 171 SMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRG---MVPDNIDVHCLAGLIKAWFREL 247 (525)
Q Consensus 171 ~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g---~~~~~~Dvh~vAslLK~fLReL 247 (525)
++..++ .....+|.+|.+|+++| |++||++|||||++|+.. +.+|++.||.+ .+.+.+|+|+||++||.|||+|
T Consensus 4 ~~~~~~-~~~~~~P~iv~~ci~~I-E~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReL 80 (200)
T cd04388 4 DLTEQF-SPPDVAPPLLIKLVEAI-EKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDL 80 (200)
T ss_pred cHHHHh-CCCCCCCHHHHHHHHHH-HHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhC
Confidence 333334 34588999999999999 899999999999999765 78899999985 2346789999999999999999
Q ss_pred CCCCCCCCCHHHHHHhh--------hHHHHHHHHH--hCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhcccc
Q 009807 248 PTGVLDSLSPEQVMQAQ--------SEEECARLVR--LLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMT 317 (525)
Q Consensus 248 PePLlp~~l~~~ll~~~--------~~e~l~~ll~--~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Ll 317 (525)
|+||||+.+|+.|+++. +.+.++.++. .||+.|+.+|+||+.||.+|++++..|+|+++|||+||||+||
T Consensus 81 PePLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~ 160 (200)
T cd04388 81 PNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLF 160 (200)
T ss_pred CCccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhc
Confidence 99999999999999864 2234677776 8999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 009807 318 QMSDPLTALMYAVQVMNFLKTLIIKTLKE 346 (525)
Q Consensus 318 r~~d~~~~l~~~~~v~~~l~~LI~~ll~e 346 (525)
|++.... ........+++.||.+.+.+
T Consensus 161 r~~~~~~--~~~~~~~~vvE~Li~~~~~e 187 (200)
T cd04388 161 RFQPASS--DSPEFHIRIIEVLITSEWNE 187 (200)
T ss_pred CCCcccc--cchhhHHHHHHHHHHHHHhh
Confidence 9876421 11122334555566543333
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=6.9e-35 Score=281.37 Aligned_cols=144 Identities=22% Similarity=0.383 Sum_probs=131.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC---CCCCChhhhhHHHHHHHHhCCCCCC
Q 009807 176 FDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV---PDNIDVHCLAGLIKAWFRELPTGVL 252 (525)
Q Consensus 176 ~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~---~~~~Dvh~vAslLK~fLReLPePLl 252 (525)
+...+..||.+|.+|++|| +++|+++|||||++|+..+++.+++.|+.|.. ...+|+|+||++||.|||+||+|||
T Consensus 10 ~~~~~~~IP~~l~~ci~~i-e~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi 88 (193)
T cd04382 10 DPSTSPMIPALIVHCVNEI-EARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLI 88 (193)
T ss_pred CCCCCCCccHHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCC
Confidence 4456789999999999999 78999999999999999999999999998753 3466999999999999999999999
Q ss_pred CCCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCC
Q 009807 253 DSLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSD 321 (525)
Q Consensus 253 p~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d 321 (525)
|.++|+.|+++.+ .+.++.++..||+.|+.+|.||+.||++|++ ++.|||++.|||+||||+||+.+.
T Consensus 89 ~~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~ 163 (193)
T cd04382 89 TFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSV 163 (193)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCC
Confidence 9999999988742 3467889999999999999999999999999 999999999999999999999764
No 34
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-34 Score=280.80 Aligned_cols=145 Identities=27% Similarity=0.421 Sum_probs=128.1
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC----CCCChhhhhHHH
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP----DNIDVHCLAGLI 240 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~----~~~Dvh~vAslL 240 (525)
||.+|.+- .++ +|.+|++|| ++ |+++|||||++|+..+++.|++.||+|... .++|+|+||++|
T Consensus 1 ~~~~~~~~---------~~~-~v~~~i~~l-~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lL 68 (208)
T cd04392 1 FGAPLTEE---------GIA-QIYQLIEYL-EK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVL 68 (208)
T ss_pred CCCCcccc---------ccH-HHHHHHHHH-Hh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 78887542 233 778999999 56 999999999999999999999999998643 357999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHhhh-------------------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccC
Q 009807 241 KAWFRELPTGVLDSLSPEQVMQAQS-------------------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFN 301 (525)
Q Consensus 241 K~fLReLPePLlp~~l~~~ll~~~~-------------------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~N 301 (525)
|.|||+||+||||.++|+.|+++.+ ++.++.++.+||+.|+.+|+||+.||++|+++++.|
T Consensus 69 K~flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~N 148 (208)
T cd04392 69 KGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKN 148 (208)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999876432 234677899999999999999999999999999999
Q ss_pred CCChhhhHHhhhccccCCCC
Q 009807 302 KMNARNVAMVFAPNMTQMSD 321 (525)
Q Consensus 302 kMt~~NLAiVFaP~Llr~~d 321 (525)
||++.|||+||||+|+++.+
T Consensus 149 kM~~~NLAivf~P~Ll~~~~ 168 (208)
T cd04392 149 KMSADNLALLFTPHLICPRN 168 (208)
T ss_pred CCCHHHHHHHhCcccCCCCC
Confidence 99999999999999999765
No 35
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-34 Score=280.84 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=134.3
Q ss_pred cccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCC--CCcC----CceecCCCcchHHHHHHHHhcCCCC-------CCC
Q 009807 165 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGG--LQAE----GIFRINAENGQEEYVRDQLNRGMVP-------DNI 231 (525)
Q Consensus 165 FGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~G--L~~E----GIFRvsGs~~~V~~Lr~~ld~g~~~-------~~~ 231 (525)
|||+|+.+. .+.+..||.+|.+|++|| +++| +..+ ||||++|+..++++||+.||.|... +.+
T Consensus 1 FGv~L~~~~---~~~~~~VP~vV~~ci~~i-e~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~ 76 (212)
T cd04399 1 FGVDLETRC---RLDKKVVPLIVSAILSYL-DQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKF 76 (212)
T ss_pred CCCcHHHHH---hhcCCCCCHHHHHHHHHH-HHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccC
Confidence 999999984 345678999999999999 6644 4333 9999999999999999999998543 368
Q ss_pred ChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHh-------------hhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhc
Q 009807 232 DVHCLAGLIKAWFRELPTGVLDSLSPEQVMQA-------------QSEEECARLVRLLPPTEAALLDWAINLMADVAQME 298 (525)
Q Consensus 232 Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~-------------~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s 298 (525)
|+|+||++||.|||+||+||+|+++|+.|+++ .+...++.++.+||..|+.+|++|+.||++|++++
T Consensus 77 dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~ 156 (212)
T cd04399 77 EPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEIT 156 (212)
T ss_pred CHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998654 23346889999999999999999999999999987
Q ss_pred ccC---CCChhhhHHhhhccccCCCChh
Q 009807 299 HFN---KMNARNVAMVFAPNMTQMSDPL 323 (525)
Q Consensus 299 ~~N---kMt~~NLAiVFaP~Llr~~d~~ 323 (525)
..| ||++.|||+||||+|+|+....
T Consensus 157 ~~~~~~kM~~~nLa~vfgp~llr~~~~~ 184 (212)
T cd04399 157 KMGESEEEYADKLATSLSREILRPIIES 184 (212)
T ss_pred hcccccccCHHHHHHHhhhhhcCCCccc
Confidence 665 6999999999999999987543
No 36
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=2e-33 Score=276.21 Aligned_cols=183 Identities=17% Similarity=0.227 Sum_probs=152.7
Q ss_pred CCCccccchhhhhhhh-------------------cCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcch----HHH
Q 009807 161 SANVFGVSTESMQLSF-------------------DSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQ----EEY 217 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~-------------------~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~----V~~ 217 (525)
.+++||.+|+.|..-. ......||.+|.+|++|| +++|+++|||||++|+... +++
T Consensus 9 ~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L-~~~gl~~eGiFR~~G~~~~~~~~i~~ 87 (220)
T cd04380 9 LPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYL-YTRGLAQEGLFEEPGLPSEPGELLAE 87 (220)
T ss_pred ecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHH-HHcCCcccCcccCCCcccchHHHHHH
Confidence 3568888888763311 112358999999999999 6799999999999999999 999
Q ss_pred HHHHHhcCCCC-CCCChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHh--hhHHHHHHHHH-hCChhhHHHHHHHHHHHHH
Q 009807 218 VRDQLNRGMVP-DNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQA--QSEEECARLVR-LLPPTEAALLDWAINLMAD 293 (525)
Q Consensus 218 Lr~~ld~g~~~-~~~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~--~~~e~l~~ll~-~LP~~nr~lL~~Li~fL~~ 293 (525)
+++.+|+|... ...|+|++|++||.|||+||+||||+.+|+.++++ .+.+.++.++. .||+.|+.+|.||+.||++
T Consensus 88 l~~~ld~~~~~~~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~~fL~~ 167 (220)
T cd04380 88 IRDALDTGSPFNSPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLRE 167 (220)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 99999999654 67899999999999999999999999999999998 67778999999 9999999999999999999
Q ss_pred HhhhcccCCCChhhhHHhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 009807 294 VAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLK 345 (525)
Q Consensus 294 V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~ 345 (525)
|+++++.|+|++.|||+||||+|+|++.+... ............+|.++|.
T Consensus 168 v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~-~~~~~~~~~~~~~i~~fl~ 218 (220)
T cd04380 168 LLSESADRGLDENTLATIFGRVLLRDPPRAGG-KERRAERDRKRAFIEQFLL 218 (220)
T ss_pred HHHHHHhhCCCHHHhHHHhcchhccCCcccch-hHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998875332 2222223334455555443
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-33 Score=273.37 Aligned_cols=140 Identities=16% Similarity=0.303 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHH-HhcCC------CC--CCCChhhhhHHHHHHHHhCCCCCCC
Q 009807 183 VPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQ-LNRGM------VP--DNIDVHCLAGLIKAWFRELPTGVLD 253 (525)
Q Consensus 183 VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~-ld~g~------~~--~~~Dvh~vAslLK~fLReLPePLlp 253 (525)
.+.||.+|++|| +++|+++|||||++|+..++++++.. ++.+. +. ..+|+|+||++||+|||+||+||||
T Consensus 28 ~~~iv~~ci~~l-e~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 28 GFKFVRKCIEAV-ETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred cHHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 456889999999 78999999999999999999999875 56541 11 2579999999999999999999999
Q ss_pred CCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChh
Q 009807 254 SLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPL 323 (525)
Q Consensus 254 ~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~ 323 (525)
+++|+.|+.+. +...++.++..||+.|+.+|+||+.||++|+++++.|||++.|||+||||+|+|+.+..
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~ 183 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET 183 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc
Confidence 99999999864 34567899999999999999999999999999999999999999999999999987643
No 38
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-34 Score=301.30 Aligned_cols=202 Identities=22% Similarity=0.358 Sum_probs=177.3
Q ss_pred cccccccccccccccCCCcccccccceEeeecccccCCCccCCCCCCCCCCCCCCCccccchhhhhhhhcCCCCCCCHHH
Q 009807 108 LVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTIL 187 (525)
Q Consensus 108 l~g~~~~~~~~~~~igwp~~i~~~a~it~~r~~~~~gl~~~~~~~~p~~~~~~~~~vFGv~Le~l~~~~~~~~~~VP~iL 187 (525)
-.|.+.+.++..++| +.+.+++.+.+++++..+|+..+..+.. ++..+.+.||||||..+ .++.|..||.+|
T Consensus 249 ~~~s~~I~d~~~~qm---~~~~~~SLieLTA~~d~~~~~lK~kr~k--k~d~kd~~vFGVPL~vl---l~rtG~~lP~~i 320 (674)
T KOG2200|consen 249 NSGSTRIGDQSAQQM---KKLHHLSLIELTALMDILGIQLKRKRAK--KVDGKDGGVFGVPLTVL---LQRTGQPLPLSI 320 (674)
T ss_pred CCCCcccCCcCHHHH---hhhhhhHHHHHHHHHHHhCchhhhhccc--CCccCCCceeecCceee---eccCCCcCcHHH
Confidence 345666677777777 6789999999999999999877653332 23346889999999988 357899999999
Q ss_pred HHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-----CCCCCChhhhhHHHHHHHHhCCCCCCCCCCHHHHHH
Q 009807 188 LLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM-----VPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQ 262 (525)
Q Consensus 188 ~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~-----~~~~~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~ 262 (525)
.++++|| +.+||+++||||++|.+.+|+.|++.++... .++....|++|++||.|||+||+|||+.++.+.|++
T Consensus 321 Qq~m~~l-r~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~ 399 (674)
T KOG2200|consen 321 QQAMRYL-RERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQ 399 (674)
T ss_pred HHHHHHH-HHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHH
Confidence 9999999 8999999999999999999999999988642 246778999999999999999999999999999988
Q ss_pred h-------hhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccC
Q 009807 263 A-------QSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQ 318 (525)
Q Consensus 263 ~-------~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr 318 (525)
+ ++.++++.+|..||.+||.+|+.|+.||++|+.+++.|+||+.|||+||||+||.
T Consensus 400 i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~ 462 (674)
T KOG2200|consen 400 IYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFH 462 (674)
T ss_pred HHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHh
Confidence 6 4667889999999999999999999999999999999999999999999999986
No 39
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=5e-31 Score=247.99 Aligned_cols=159 Identities=31% Similarity=0.468 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC----CCCCChhhhhHHHHHHHHhCCCCCCCCCCH
Q 009807 182 SVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV----PDNIDVHCLAGLIKAWFRELPTGVLDSLSP 257 (525)
Q Consensus 182 ~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~----~~~~Dvh~vAslLK~fLReLPePLlp~~l~ 257 (525)
.||.+|..|+.|| +++|+++|||||++|+..+++.+++.++.|.. ...+|+|++|++||.|||+||+||+|.+.|
T Consensus 2 ~vP~~l~~~~~~l-~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~ 80 (174)
T smart00324 2 PIPIIVEKCIEYL-EKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELY 80 (174)
T ss_pred CCChHHHHHHHHH-HHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 5999999999999 56999999999999999999999999999864 457899999999999999999999999999
Q ss_pred HHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChhHH-HHHH
Q 009807 258 EQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTA-LMYA 329 (525)
Q Consensus 258 ~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~~~-l~~~ 329 (525)
+.|+.+.+ ...++.++.+||..|+.+|.||+.||++|+.+++.|+|+++|||+||||+|++.++.... +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~~~~~~ 160 (174)
T smart00324 81 EEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDI 160 (174)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHHHHHHH
Confidence 99987643 456899999999999999999999999999999999999999999999999999876543 4444
Q ss_pred HHHHHHHHHHHH
Q 009807 330 VQVMNFLKTLII 341 (525)
Q Consensus 330 ~~v~~~l~~LI~ 341 (525)
.....+++.+|+
T Consensus 161 ~~~~~~i~~li~ 172 (174)
T smart00324 161 RHQNTVVETLIE 172 (174)
T ss_pred HHHHHHHHHHHh
Confidence 444555555543
No 40
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=5.7e-31 Score=294.93 Aligned_cols=189 Identities=26% Similarity=0.364 Sum_probs=159.6
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC--------CCC
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP--------DNI 231 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~--------~~~ 231 (525)
+..++|||+|.++.. .....-||.||..|+..+ |.+||++.|||||||+...|..|++.+|.+.|. .+-
T Consensus 1153 ~~~~~~GVrl~dCP~--~~~n~yVP~iV~~C~~vV-Et~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWr 1229 (1973)
T KOG4407|consen 1153 APQPVLGVRLADCPT--GSCNDYVPMIVQACVCVV-ETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWR 1229 (1973)
T ss_pred CcCcccccccccCCc--ccccccchHHHHHHHHHH-hhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchh
Confidence 456799999988632 234567999999999887 899999999999999999999999999987432 356
Q ss_pred ChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCC
Q 009807 232 DVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMN 304 (525)
Q Consensus 232 Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt 304 (525)
|+++|.+|||.|||.||+|||+..+|..||++.+ +..++.||..||.++|.+|++|+.||.+|+.|+++|||-
T Consensus 1230 DvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkME 1309 (1973)
T KOG4407|consen 1230 DVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKME 1309 (1973)
T ss_pred hhHHHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999864 345789999999999999999999999999999999999
Q ss_pred hhhhHHhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 009807 305 ARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVES 354 (525)
Q Consensus 305 ~~NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~if~~ 354 (525)
++|||++|||+|+|.+++....| +..|.- +.-|+++|+.|++.||..
T Consensus 1310 prNLAi~FGPsiVRts~Dnm~tm--VthM~d-QckIVEtLI~~~dwfF~e 1356 (1973)
T KOG4407|consen 1310 PRNLAIMFGPSIVRTSDDNMATM--VTHMSD-QCKIVETLIHYNDWFFDE 1356 (1973)
T ss_pred ccceeEEeccceeccCCccHHHH--hhcchh-hhhHHHHHHhhhhheecc
Confidence 99999999999999887533222 223322 234556677789999876
No 41
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=6e-30 Score=237.53 Aligned_cols=156 Identities=29% Similarity=0.483 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC---CCCChhhhhHHHHHHHHhCCCCCCCCCCHHHH
Q 009807 184 PTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP---DNIDVHCLAGLIKAWFRELPTGVLDSLSPEQV 260 (525)
Q Consensus 184 P~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~---~~~Dvh~vAslLK~fLReLPePLlp~~l~~~l 260 (525)
|.+|..|++|| +++|+.++||||++|+..+++.+++.++.|... ..+|+|++|++||.|||+||+|||+.+.|+.+
T Consensus 1 P~~l~~~~~~l-~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYL-EKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHH-HHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 88999999999 569999999999999999999999999998753 68899999999999999999999999999999
Q ss_pred HHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChh-HHHHHHHHH
Q 009807 261 MQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPL-TALMYAVQV 332 (525)
Q Consensus 261 l~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~-~~l~~~~~v 332 (525)
+.+. +.+.++.++..||+.|+.+|.||+.||++|+.+++.|+|+++|||+||||+|++...+. .........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~~~~~~~~~~~ 159 (169)
T cd00159 80 IELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKKL 159 (169)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCccHHHHHHhHHH
Confidence 8874 55678999999999999999999999999999999999999999999999999988754 333333444
Q ss_pred HHHHHHHH
Q 009807 333 MNFLKTLI 340 (525)
Q Consensus 333 ~~~l~~LI 340 (525)
..+++.||
T Consensus 160 ~~~~~~li 167 (169)
T cd00159 160 NEIVEFLI 167 (169)
T ss_pred HHHHHHHH
Confidence 44555554
No 42
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-29 Score=278.25 Aligned_cols=167 Identities=25% Similarity=0.452 Sum_probs=143.6
Q ss_pred CCCCCCCCCccccchhhh-hhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC------
Q 009807 155 RRAPSASANVFGVSTESM-QLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV------ 227 (525)
Q Consensus 155 ~~~~~~~~~vFGv~Le~l-~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~------ 227 (525)
++++....+|||.+|..- .....+....+|+||++|++||+..+|+++|||||++|+...|+.|+++||.+..
T Consensus 890 ~~~~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~ 969 (1112)
T KOG4269|consen 890 RKPSVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSM 969 (1112)
T ss_pred CCCcceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhc
Confidence 344557789999766431 0111233467999999999999769999999999999999999999999999832
Q ss_pred CCCCChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHh-------hhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhccc
Q 009807 228 PDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQA-------QSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHF 300 (525)
Q Consensus 228 ~~~~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~-------~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~ 300 (525)
.+++|||+|||+||+|||+||+|||+.++|..|... +..-.+..||..||++|..+|.+|+.||.+|++++.+
T Consensus 970 d~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekv 1049 (1112)
T KOG4269|consen 970 DSEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKV 1049 (1112)
T ss_pred cccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccc
Confidence 257899999999999999999999999999998764 2333478899999999999999999999999999999
Q ss_pred CCCChhhhHHhhhccccCCCC
Q 009807 301 NKMNARNVAMVFAPNMTQMSD 321 (525)
Q Consensus 301 NkMt~~NLAiVFaP~Llr~~d 321 (525)
|||+++|||+||+|+|.++.+
T Consensus 1050 NKMnlrNlciVFsPTLniPse 1070 (1112)
T KOG4269|consen 1050 NKMNLRNLCIVFSPTLNIPSE 1070 (1112)
T ss_pred ccccccceeeeecccccCcHH
Confidence 999999999999999999876
No 43
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.95 E-value=5.2e-28 Score=263.54 Aligned_cols=159 Identities=25% Similarity=0.442 Sum_probs=143.3
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC-----CCCCChh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV-----PDNIDVH 234 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~-----~~~~Dvh 234 (525)
....+||++|+.+ ..+.+..||.+|.+|++.| +..|++..||||++|+...|.+|+.++|.... ....|+|
T Consensus 452 k~~~vFGs~Leal---c~rE~~~vP~~V~~c~~~I-E~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dih 527 (650)
T KOG1450|consen 452 KFDKVFGSPLEAL---CQRENGLVPKIVRLCIEHI-EKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIH 527 (650)
T ss_pred ccCcccCccHHHH---hhccCCCcchHHHHHHHHH-hhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHH
Confidence 3467999999998 3457788999999999998 89999999999999999999999999995432 2347999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhh
Q 009807 235 CLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307 (525)
Q Consensus 235 ~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~N 307 (525)
+|+++||.||||||+||++..++..|..+. +.....+++..||..|+.||+||+.||++|.+|++.|||+.+|
T Consensus 528 ai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~N 607 (650)
T KOG1450|consen 528 AITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHN 607 (650)
T ss_pred HHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999999998764 4456789999999999999999999999999999999999999
Q ss_pred hHHhhhccccCCCCh
Q 009807 308 VAMVFAPNMTQMSDP 322 (525)
Q Consensus 308 LAiVFaP~Llr~~d~ 322 (525)
||+||||+|+++...
T Consensus 608 LaIVfgpTl~~~~~~ 622 (650)
T KOG1450|consen 608 LAIVFGPTLIKPEQE 622 (650)
T ss_pred eEEEecccccccccc
Confidence 999999999996554
No 44
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=1.6e-28 Score=225.06 Aligned_cols=138 Identities=33% Similarity=0.562 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC----CCCCChhhhhHHHHHHHHhCCCCCCCCCCHHH
Q 009807 184 PTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV----PDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQ 259 (525)
Q Consensus 184 P~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~----~~~~Dvh~vAslLK~fLReLPePLlp~~l~~~ 259 (525)
|.+|..|++|| +++|+.++||||++|+..+++.+++.++.|.. .+.+|+|+||++||.|||+||+||++.++|+.
T Consensus 1 P~~l~~~~~~l-~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~ 79 (151)
T PF00620_consen 1 PRILNDCVDYL-EKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDK 79 (151)
T ss_dssp EHHHHHHHHHH-HHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHH
T ss_pred ChHHHHHHHHH-HHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHH
Confidence 88999999999 67999999999999999999999999999864 47899999999999999999999999999999
Q ss_pred HHHh-------hhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCCh
Q 009807 260 VMQA-------QSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDP 322 (525)
Q Consensus 260 ll~~-------~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~ 322 (525)
|+.+ .+.+.++.++..||..|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 80 FIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 9964 24456899999999999999999999999999999999999999999999999997753
No 45
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.94 E-value=5.2e-26 Score=241.57 Aligned_cols=173 Identities=17% Similarity=0.306 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhc-------CC-CCCCCChhhhhHHHHHHHHhCCCCCCCCCC
Q 009807 185 TILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNR-------GM-VPDNIDVHCLAGLIKAWFRELPTGVLDSLS 256 (525)
Q Consensus 185 ~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~-------g~-~~~~~Dvh~vAslLK~fLReLPePLlp~~l 256 (525)
.||.+||..| |..|++++|+||..|...+|++|...+-. +. ..+.||+-+|++.||.|||.||+||+++.+
T Consensus 390 ~fvrkCI~i~-Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~L 468 (812)
T KOG1451|consen 390 EFVRKCIDIL-ETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYEL 468 (812)
T ss_pred HHHHHHHHHH-HhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHH
Confidence 4889999998 89999999999999999999998766532 11 225789999999999999999999999999
Q ss_pred HHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChhHHHHHH
Q 009807 257 PEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYA 329 (525)
Q Consensus 257 ~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~~~l~~~ 329 (525)
+..|+.++ ++++++.++.+||..||.+|..||+||.+|+.|+..|.|++.||++||||+|+|+.....+.+..
T Consensus 469 Hk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMd 548 (812)
T KOG1451|consen 469 HKVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMD 548 (812)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHc
Confidence 99999985 45679999999999999999999999999999999999999999999999999999866555544
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCCCCCC
Q 009807 330 VQVMNFLKTLIIKTLKEREDSLVESIPVSRLEP 362 (525)
Q Consensus 330 ~~v~~~l~~LI~~ll~e~~~~if~~~p~~~~~~ 362 (525)
.+. +++|+++|+++++.||...|...+.+
T Consensus 549 IKF----QNIVVEILIEnyeKIF~t~Pd~S~~~ 577 (812)
T KOG1451|consen 549 IKF----QNIVVEILIENYEKIFKTKPDSSFGS 577 (812)
T ss_pred chh----hhhhHHHHHhhhHHHhcCCCCccCCC
Confidence 444 47778888889999999888777654
No 46
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=4.6e-26 Score=239.23 Aligned_cols=138 Identities=25% Similarity=0.392 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-------CCCCCChhhhhHHHHHHHHhCCCCCCC
Q 009807 181 NSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM-------VPDNIDVHCLAGLIKAWFRELPTGVLD 253 (525)
Q Consensus 181 ~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~-------~~~~~Dvh~vAslLK~fLReLPePLlp 253 (525)
..||.+|.+|++|| +++|+.+.||||++|+..+|++|++.|+.+. +++++++|++|+|||.|||+||+||||
T Consensus 92 ~~IP~vv~~c~~~l-k~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP 170 (412)
T KOG2710|consen 92 GQIPRVVAKCGQYL-KKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLP 170 (412)
T ss_pred eeCcHHHHHHHHHH-HHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCC
Confidence 57999999999999 7999999999999999999999999999972 346789999999999999999999999
Q ss_pred CCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccC-----------CCChhhhHHhhhcc
Q 009807 254 SLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFN-----------KMNARNVAMVFAPN 315 (525)
Q Consensus 254 ~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~N-----------kMt~~NLAiVFaP~ 315 (525)
.++|+.|+...+ ...++.++..||+.|+.+|.+|+.||+.|+.|++.| +|++.|||+||+|+
T Consensus 171 ~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~ 250 (412)
T KOG2710|consen 171 LELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPN 250 (412)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcch
Confidence 999999998643 335788899999999999999999999999999998 99999999999999
Q ss_pred ccCC
Q 009807 316 MTQM 319 (525)
Q Consensus 316 Llr~ 319 (525)
++..
T Consensus 251 iL~k 254 (412)
T KOG2710|consen 251 ILYK 254 (412)
T ss_pred hhhc
Confidence 9983
No 47
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=6e-26 Score=234.78 Aligned_cols=181 Identities=28% Similarity=0.392 Sum_probs=156.4
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCC-CCcCCceecCCCcchHHHHHHHHhcCCCC--CCC-Chhh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGG-LQAEGIFRINAENGQEEYVRDQLNRGMVP--DNI-DVHC 235 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~G-L~~EGIFRvsGs~~~V~~Lr~~ld~g~~~--~~~-Dvh~ 235 (525)
..+..||++|+-+. .....+..+|.+|..|+++| ...| +.+|||||.+++...+.++.+.+|+|..+ +.+ |+|.
T Consensus 249 l~t~qFgvpLqf~~-~~~~e~~~iPpiv~~tV~~L-~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~ 326 (467)
T KOG4406|consen 249 LPTQQFGVPLQFIP-EKNPEGESIPPIVRSTVEYL-QAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHA 326 (467)
T ss_pred CchhhcCccHHHhc-ccCcccCCCCcHHHHHhhhh-hccceecccceeccccCccchHHHHHHhcCCCcccHHHhccchh
Confidence 56789999999873 23335789999999999999 7888 99999999999999999999999999754 344 5999
Q ss_pred hhHHHHHHHHhCCCCCCCCCCHHHHHHhh------hHHHHHHHHHh-CChhhHHHHHHHHHHHHHHhhhcccCCCChhhh
Q 009807 236 LAGLIKAWFRELPTGVLDSLSPEQVMQAQ------SEEECARLVRL-LPPTEAALLDWAINLMADVAQMEHFNKMNARNV 308 (525)
Q Consensus 236 vAslLK~fLReLPePLlp~~l~~~ll~~~------~~e~l~~ll~~-LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NL 308 (525)
.|.+||.|||+||+||++.++|+.+.... +...+.+++.. ||+.|+.++++++.||.+|++++..|+||+.||
T Consensus 327 ~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNL 406 (467)
T KOG4406|consen 327 PAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNL 406 (467)
T ss_pred hHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccc
Confidence 99999999999999999999999987653 33357888886 999999999999999999999999999999999
Q ss_pred HHhhhccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 009807 309 AMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIK 342 (525)
Q Consensus 309 AiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ 342 (525)
|+||||+|+|+.+....+...+.+..|.+.+|++
T Consensus 407 a~vfGpnl~w~~~~s~tl~q~npin~F~~~li~~ 440 (467)
T KOG4406|consen 407 AVVFGPNLLWAQDESLTLKQINPINKFTKFLIEH 440 (467)
T ss_pred eeeecccccccccccccHHHhccHHHHHHHHHHh
Confidence 9999999999998766666666677666666654
No 48
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.92 E-value=6.5e-25 Score=253.33 Aligned_cols=190 Identities=23% Similarity=0.316 Sum_probs=160.4
Q ss_pred ccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcC---CCCCCCChhhhhHHH
Q 009807 164 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRG---MVPDNIDVHCLAGLI 240 (525)
Q Consensus 164 vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g---~~~~~~Dvh~vAslL 240 (525)
+||+.|..+. ...+..||.++.+|+.|| +.+|+.+|||||++|...+++.|...|+.| +.....|+|+++++|
T Consensus 602 ~fG~~l~~~~---~~e~~~vP~i~~~c~~~i-e~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVl 677 (918)
T KOG1453|consen 602 LFGVSLSELA---RYEPSTVPFILKKCLREI-EAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVL 677 (918)
T ss_pred cccHHHHHhh---ccCCCCCCHHHHHHHHHH-HHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHH
Confidence 9999998872 336778999999999999 899999999999999999999999999998 345789999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHhhhH-------------HHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhh
Q 009807 241 KAWFRELPTGVLDSLSPEQVMQAQSE-------------EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307 (525)
Q Consensus 241 K~fLReLPePLlp~~l~~~ll~~~~~-------------e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~N 307 (525)
|.|||+||+|||++..|+.|+.+.+. ..+..++..||+.|+.+|++|+.||.+|+.+++.|+|++.|
T Consensus 678 K~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~n 757 (918)
T KOG1453|consen 678 KLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKN 757 (918)
T ss_pred HHHHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Confidence 99999999999999999999987544 34678999999999999999999999999999999999999
Q ss_pred hHHhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCC
Q 009807 308 VAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESIPV 357 (525)
Q Consensus 308 LAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~if~~~p~ 357 (525)
||+||||+|+|++++..++.......-.+..+|.++.+-.+++.|...|.
T Consensus 758 laivF~Ptllr~~d~~~~~~~~~~~~y~~~~~l~~~~~~~~~~~~~e~p~ 807 (918)
T KOG1453|consen 758 LAIVFAPTLLRPPDGTRDLTDMKDKNYPLAAQLPEYKITLHNLSFLEEPP 807 (918)
T ss_pred ccccccCcccCCCCCcchhhhhccchhhHHHhcchHHHHHhhcccccCCc
Confidence 99999999999998766665444333334455555555555555555443
No 49
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=2.7e-23 Score=227.88 Aligned_cols=150 Identities=25% Similarity=0.346 Sum_probs=132.9
Q ss_pred ccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC-----CCCCChhhhhHHH
Q 009807 166 GVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV-----PDNIDVHCLAGLI 240 (525)
Q Consensus 166 Gv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~-----~~~~Dvh~vAslL 240 (525)
|..|++++ -.++.||.||..||.|+ .++||..|||||.+|...++..|.+.|-++.. ..+..+.+|+++|
T Consensus 714 gt~Lqeqq----Ls~~dIPvIVd~CI~FV-TqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvL 788 (1186)
T KOG1117|consen 714 GTALQEQQ----LSKNDIPVIVDSCIAFV-TQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVL 788 (1186)
T ss_pred cchhhhhh----ccCCCCcEehHHHHHHH-HHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHH
Confidence 44555543 24678999999999999 79999999999999999999999999977532 2467899999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhh
Q 009807 241 KAWFRELPTGVLDSLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFA 313 (525)
Q Consensus 241 K~fLReLPePLlp~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFa 313 (525)
|+|||+|++||++.++|..|+++.. ...+.++|..||..||.||+.||.||++|..++++|+|+++|||.|||
T Consensus 789 k~FlrdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa 868 (1186)
T KOG1117|consen 789 KRFLRDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFA 868 (1186)
T ss_pred HHHHHhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Confidence 9999999999999999999998743 345788999999999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 009807 314 PNMTQMS 320 (525)
Q Consensus 314 P~Llr~~ 320 (525)
|+||...
T Consensus 869 ~sLFqTd 875 (1186)
T KOG1117|consen 869 PSLFQTD 875 (1186)
T ss_pred hhheecC
Confidence 9999754
No 50
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=210.94 Aligned_cols=173 Identities=20% Similarity=0.294 Sum_probs=141.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC---CCCChhhhhHHHHHHHHhCCCCCCCCCC
Q 009807 180 GNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP---DNIDVHCLAGLIKAWFRELPTGVLDSLS 256 (525)
Q Consensus 180 ~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~---~~~Dvh~vAslLK~fLReLPePLlp~~l 256 (525)
.-.||.+|..|+..| |.+||.+|||||++|....++.|+++|-+|.-+ ...|+|++|++||.|||.|-+||||...
T Consensus 359 aPMIPalVVHCVneI-EaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~ 437 (604)
T KOG3564|consen 359 APMIPALVVHCVNEI-EARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRL 437 (604)
T ss_pred cccchHHHHHHHHHH-HHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchH
Confidence 356999999999999 899999999999999999999999999998643 4679999999999999999999999999
Q ss_pred HHHHHHhhhH-------HHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCC----ChhHH
Q 009807 257 PEQVMQAQSE-------EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMS----DPLTA 325 (525)
Q Consensus 257 ~~~ll~~~~~-------e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~----d~~~~ 325 (525)
..+|+.+... .++...+..||..||.+|.|||-|+++||+ +..|||+..|||.+|||+++-.+ ++...
T Consensus 438 ~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~~ 516 (604)
T KOG3564|consen 438 RRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVTM 516 (604)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhHH
Confidence 9999988532 346778889999999999999999999988 89999999999999999998632 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 009807 326 LMYAVQVMNFLKTLIIKTLKEREDSLVESI 355 (525)
Q Consensus 326 l~~~~~v~~~l~~LI~~ll~e~~~~if~~~ 355 (525)
+.........++.|++ +-.+|...|..-.
T Consensus 517 l~dv~~q~rvmkaLle-lp~~yWsqfl~v~ 545 (604)
T KOG3564|consen 517 LQDVKTQPRVMKALLE-LPLEYWSQFLGVE 545 (604)
T ss_pred HHhhhhhHHHHHHHHh-CCHHHHHHhhccc
Confidence 3333444455666654 3344555554433
No 51
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.77 E-value=1e-18 Score=175.67 Aligned_cols=155 Identities=17% Similarity=0.259 Sum_probs=135.7
Q ss_pred CCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-CC----C-CCChh
Q 009807 161 SANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM-VP----D-NIDVH 234 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~-~~----~-~~Dvh 234 (525)
-.++||.+|+.+. ++....-|+++.+|++.| |++|++.-|+||+.|+..+-+.||+.|+... .. + --|.+
T Consensus 181 lrgvfG~~L~~lV---~RE~~~~PIvlrR~~~Ei-EkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~n 256 (442)
T KOG1452|consen 181 LRGVFGISLSRLV---QREPESPPIVLRRLYAEI-EKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYN 256 (442)
T ss_pred cccccchhhHhHh---hcCCCCCchHHHHHHHHH-HhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcc
Confidence 3469999999983 456677899999999998 8999999999999999999999999998742 11 2 24889
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCHHHHHHhhh----------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCC
Q 009807 235 CLAGLIKAWFRELPTGVLDSLSPEQVMQAQS----------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMN 304 (525)
Q Consensus 235 ~vAslLK~fLReLPePLlp~~l~~~ll~~~~----------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt 304 (525)
+|++++|.|||||||||++...++..+++.. ...+-.+|..||..++.+|..++.||..|.-+++.|+|+
T Consensus 257 vItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt 336 (442)
T KOG1452|consen 257 VITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLT 336 (442)
T ss_pred eeecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcC
Confidence 9999999999999999999998888877632 234677889999999999999999999999999999999
Q ss_pred hhhhHHhhhccccCC
Q 009807 305 ARNVAMVFAPNMTQM 319 (525)
Q Consensus 305 ~~NLAiVFaP~Llr~ 319 (525)
+..||.||||.||-.
T Consensus 337 ~~~Ls~i~~P~L~~~ 351 (442)
T KOG1452|consen 337 PTRLSLIFAPLLFFC 351 (442)
T ss_pred HHHHHHHhhhhHHHh
Confidence 999999999999853
No 52
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.75 E-value=8.5e-19 Score=189.58 Aligned_cols=208 Identities=18% Similarity=0.138 Sum_probs=177.8
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC--CCCChhhhh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP--DNIDVHCLA 237 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~--~~~Dvh~vA 237 (525)
+...+||.||..+.. . ..+|..+..+.-+| -..|.-++||||..++...+++|++.++.|+.. +...+|++|
T Consensus 78 ~~~~Lfg~pl~nic~----~-~~lp~p~~d~l~~l-c~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a 151 (741)
T KOG4724|consen 78 ADSFLFGWPLTNICV----H-FRLPEPDEDFLLLL-CCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDA 151 (741)
T ss_pred CCccccCccchhhcc----c-CCCCChHHHHHHHH-hhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEee
Confidence 567899999988732 2 22888888888777 578999999999999999999999999999765 567899999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHh-------hhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHH
Q 009807 238 GLIKAWFRELPTGVLDSLSPEQVMQA-------QSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAM 310 (525)
Q Consensus 238 slLK~fLReLPePLlp~~l~~~ll~~-------~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAi 310 (525)
.++|.|||.+|.-+|...+|+.|+-. +.++++..+..+||..|..+|+||+..| .|..++.+|.|+.-|||+
T Consensus 152 ~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~ 230 (741)
T KOG4724|consen 152 AVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQ 230 (741)
T ss_pred hhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHH
Confidence 99999999999999999999999865 3556788899999999999999999999 899999999999999999
Q ss_pred hhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 009807 311 VFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESIPVSRLEPSDENGHQSSSDLY 375 (525)
Q Consensus 311 VFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~if~~~p~~~~~~sd~~~~~s~s~~~ 375 (525)
|++|++++....... .......+-+..+++++|.++..+|+++++...-..++.+.......+.
T Consensus 231 cv~p~~l~~~~~~s~-e~~k~ln~kv~~l~~flI~nclrifGe~i~~~fr~~s~~s~~~e~~sd~ 294 (741)
T KOG4724|consen 231 CVNPIKLKVLTRTSS-EFGKGLNGKVPPLPIFLIVNCLRIFGEDIEGIFRKSSKQSTFKELKSDL 294 (741)
T ss_pred HhcchhcccccccCh-hhhccccCCCCCceeeehhhhHHhhcccccceeecccccccchhhhhhh
Confidence 999999998764333 5566677778899999999999999999998887777776655554443
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.69 E-value=3.6e-17 Score=181.86 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=134.3
Q ss_pred CCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcC-C-CC--CCCChhhh
Q 009807 161 SANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRG-M-VP--DNIDVHCL 236 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g-~-~~--~~~Dvh~v 236 (525)
....||.+|.... .....||.++++|++|| +..|+.+|||||++|+....+.++.+|... . +. -+..+|++
T Consensus 914 ~s~~~~~~l~~~~----t~~k~ip~~~ekc~sfi-edtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~v 988 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAV----TSEKPIPIFLEKCKSFI-EDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVV 988 (1100)
T ss_pred hhhccCCcccccc----cCCcccchHHHHHHHHH-HhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccc
Confidence 4568999998763 45678999999999999 899999999999999999999999999763 2 22 35679999
Q ss_pred hHHHHHHHHhCCCCCCCCCCHHHHHHhhh-------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807 237 AGLIKAWFRELPTGVLDSLSPEQVMQAQS-------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA 309 (525)
Q Consensus 237 AslLK~fLReLPePLlp~~l~~~ll~~~~-------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA 309 (525)
|+.+|.||..||+||+|+.+...|.++.. +..++..+..||+.|+.+|+|++.||.+|+....+|.|+..||.
T Consensus 989 agAlksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~ 1068 (1100)
T KOG4271|consen 989 AGALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLS 1068 (1100)
T ss_pred cCcchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 99999999999999999998888877643 34578899999999999999999999999999999999999999
Q ss_pred Hhhhcccc
Q 009807 310 MVFAPNMT 317 (525)
Q Consensus 310 iVFaP~Ll 317 (525)
+||++.|+
T Consensus 1069 i~~~~~~~ 1076 (1100)
T KOG4271|consen 1069 ICFPTLLM 1076 (1100)
T ss_pred ccccchHH
Confidence 99999885
No 54
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.63 E-value=3.6e-15 Score=144.47 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCc---eecCCCcchHHHH-HHHHhcCC---C--------CCCCChhhhhHHHHHHHHhC
Q 009807 183 VPTILLLMQRHLYAQGGLQAEGI---FRINAENGQEEYV-RDQLNRGM---V--------PDNIDVHCLAGLIKAWFREL 247 (525)
Q Consensus 183 VP~iL~~~i~~L~e~~GL~~EGI---FRvsGs~~~V~~L-r~~ld~g~---~--------~~~~Dvh~vAslLK~fLReL 247 (525)
|=.+|..|.+.| +.+|+++++| ||..++...++.+ +..|+.+. . ....|+|+++++||.|||.|
T Consensus 6 v~~l~~~~t~eL-k~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rL 84 (198)
T cd04401 6 VKGLIHNITEEL-KSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRL 84 (198)
T ss_pred HHHHHHHHHHHH-HhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHC
Confidence 345788899999 7899999999 9999999998877 45555541 1 12479999999999999999
Q ss_pred CCCCCCC-CCHHHHHHhhh-----HHHHHHHHHhC--ChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCC
Q 009807 248 PTGVLDS-LSPEQVMQAQS-----EEECARLVRLL--PPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQM 319 (525)
Q Consensus 248 PePLlp~-~l~~~ll~~~~-----~e~l~~ll~~L--P~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~ 319 (525)
|.++++. +.|..|....+ .+....++..+ |+.|..++.+++.||..|+.|+..|+|+..||+.+|||.+|..
T Consensus 85 P~~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~ 164 (198)
T cd04401 85 PGSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGK 164 (198)
T ss_pred CCCccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCC
Confidence 9999999 99999988754 34678888877 8899999999999999999999999999999999999999987
Q ss_pred CCh
Q 009807 320 SDP 322 (525)
Q Consensus 320 ~d~ 322 (525)
++.
T Consensus 165 ~~~ 167 (198)
T cd04401 165 PTG 167 (198)
T ss_pred CCc
Confidence 664
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.51 E-value=1.2e-13 Score=135.93 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=124.5
Q ss_pred Cccccch-hhhhhhhcCCCCCCCHHHHHHH--HHHHHcCCCCc--CCceecCCCcchHHHHHHHHhcCCCC---C-C---
Q 009807 163 NVFGVST-ESMQLSFDSRGNSVPTILLLMQ--RHLYAQGGLQA--EGIFRINAENGQEEYVRDQLNRGMVP---D-N--- 230 (525)
Q Consensus 163 ~vFGv~L-e~l~~~~~~~~~~VP~iL~~~i--~~L~e~~GL~~--EGIFRvsGs~~~V~~Lr~~ld~g~~~---~-~--- 230 (525)
.+||+|+ +.++ ..+...|..+.... +++ ..+-++. .|+||+++...-+...++.++..-+. + +
T Consensus 20 ~l~glp~Ld~vl----~~~~~~p~~i~~~~~~~~~-~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~ 94 (235)
T cd04405 20 QLVGLPLLEELL----DPALVNPKHISYNMDPDVY-TSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPL 94 (235)
T ss_pred HHcCCccHHHHh----cccCCCCcchhhccccccc-ccccccchhhcccccccCcHHHHHHHHHHHhCCccccccccccc
Confidence 4889984 5552 24556666654444 333 3334444 79999998888888888888754211 1 1
Q ss_pred CCh--------hhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh----------hHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 009807 231 IDV--------HCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ----------SEEECARLVRLLPPTEAALLDWAINLMA 292 (525)
Q Consensus 231 ~Dv--------h~vAslLK~fLReLPePLlp~~l~~~ll~~~----------~~e~l~~ll~~LP~~nr~lL~~Li~fL~ 292 (525)
++- -+||+++|.||++||+||+|..+|+.++.+. ..++++.++..||+.||..|+.|+.||+
T Consensus 95 y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~ 174 (235)
T cd04405 95 YSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMA 174 (235)
T ss_pred ccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111 2899999999999999999999999776642 3466788999999999999999999999
Q ss_pred HHhhhc-------ccCCCChhhhHHhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009807 293 DVAQME-------HFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSL 351 (525)
Q Consensus 293 ~V~~~s-------~~NkMt~~NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~i 351 (525)
+|+++. ..|+| |++..|+|.++++++-. .. .+..+|.++|.++.++|
T Consensus 175 ~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~-----~~----~~~~LV~Fmmd~~~~if 228 (235)
T cd04405 175 RAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLD-----EG----LADLLVLFLMDHHQDIF 228 (235)
T ss_pred HHHhcCccccccccchHH---HHHHHhhhHhcCccccC-----HH----HHHHHHHHHHHcchhhh
Confidence 999994 25677 99999999999988522 11 13366666666666666
No 56
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.21 E-value=9.2e-12 Score=138.96 Aligned_cols=140 Identities=23% Similarity=0.351 Sum_probs=124.0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCcCCcee-cCCCcchHHHHHHHHhcCCCC----CCCChhhhhHHHHHHHHhCCCC-CC
Q 009807 179 RGNSVPTILLLMQRHLYAQGGLQAEGIFR-INAENGQEEYVRDQLNRGMVP----DNIDVHCLAGLIKAWFRELPTG-VL 252 (525)
Q Consensus 179 ~~~~VP~iL~~~i~~L~e~~GL~~EGIFR-vsGs~~~V~~Lr~~ld~g~~~----~~~Dvh~vAslLK~fLReLPeP-Ll 252 (525)
.+..||.++..|+.++ +.+|+..+|||| ++|....|..++.++..|... .+.+... |.+||.|||.|.+| .|
T Consensus 214 ~~q~iP~i~d~~~~l~-~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f 291 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLE-ERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADF 291 (640)
T ss_pred CcccccHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccC
Confidence 4678999999999998 899999999999 899999999999999988321 3455666 99999999999999 99
Q ss_pred CCCCHHHHHHhhhH-------HHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCC
Q 009807 253 DSLSPEQVMQAQSE-------EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMS 320 (525)
Q Consensus 253 p~~l~~~ll~~~~~-------e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~ 320 (525)
+++.+..++.+... ..++.++..+|..+..++.+|..|+.+.++.++.|.|+++|+|+||||.++..+
T Consensus 292 ~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 292 PFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 99999999987533 446779999999999999999999999999999999999999999999996543
No 57
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.18 E-value=1.1e-10 Score=121.82 Aligned_cols=155 Identities=19% Similarity=0.332 Sum_probs=123.0
Q ss_pred CCCccccchhhh-hhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-------------
Q 009807 161 SANVFGVSTESM-QLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM------------- 226 (525)
Q Consensus 161 ~~~vFGv~Le~l-~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~------------- 226 (525)
..++-|.++... .......+...|.++...+.+. +.+|+-++|++|..+.....++++..-+.|.
T Consensus 48 ~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~-e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~ 126 (514)
T KOG4370|consen 48 IKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFV-EENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGL 126 (514)
T ss_pred CChhhcCCCCcccccCcccCCCcCcccchhhhhhh-hccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhH
Confidence 344555554332 1112234677888999999998 8999999999999999877776665433220
Q ss_pred -------C-----------------------CCCCChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHH
Q 009807 227 -------V-----------------------PDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEEC 269 (525)
Q Consensus 227 -------~-----------------------~~~~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l 269 (525)
+ .+++.+.+||+|||.|||+||++|++.++...|..+. ....+
T Consensus 127 ~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~ef 206 (514)
T KOG4370|consen 127 IKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEF 206 (514)
T ss_pred HHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHH
Confidence 0 1246789999999999999999999999888776642 34568
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccc
Q 009807 270 ARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNM 316 (525)
Q Consensus 270 ~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~L 316 (525)
..++..||..||.++.||+-|+-.|.+..-.|||++.||+|+..|++
T Consensus 207 q~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 207 QFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHH
Confidence 88999999999999999999999999999999999999999999987
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.29 E-value=8.6e-06 Score=87.57 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCce---ecCCCcchHHHHHHH-HhcCCC------------CCCCChhhhhHHHHHHHHh
Q 009807 183 VPTILLLMQRHLYAQGGLQAEGIF---RINAENGQEEYVRDQ-LNRGMV------------PDNIDVHCLAGLIKAWFRE 246 (525)
Q Consensus 183 VP~iL~~~i~~L~e~~GL~~EGIF---RvsGs~~~V~~Lr~~-ld~g~~------------~~~~Dvh~vAslLK~fLRe 246 (525)
|=.+|..|.+.| +.+|+++++|| |-.-+...++.+... |..+.. ....++|+++++||-.+..
T Consensus 8 v~~li~~~t~el-K~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R 86 (420)
T PF08101_consen 8 VKDLIHACTEEL-KSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR 86 (420)
T ss_pred HHHHHHHHHHHH-HhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 456788888888 79999999998 444444455444443 333321 1256999999999999999
Q ss_pred CCCCCCCCCCHHHHHHhhhHH-----HHHHHH-HhCC-hhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCC
Q 009807 247 LPTGVLDSLSPEQVMQAQSEE-----ECARLV-RLLP-PTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQM 319 (525)
Q Consensus 247 LPePLlp~~l~~~ll~~~~~e-----~l~~ll-~~LP-~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~ 319 (525)
||..+|+.+.|..|....+.. +...++ ..|| +.+..++.-++.+|..|+.|+..|+|+..-|+-.+|+-+|-.
T Consensus 87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 999999999999998776543 344444 4564 566789999999999999999999999999999999999876
Q ss_pred CCh
Q 009807 320 SDP 322 (525)
Q Consensus 320 ~d~ 322 (525)
.+.
T Consensus 167 ~~~ 169 (420)
T PF08101_consen 167 PDF 169 (420)
T ss_pred CCc
Confidence 553
No 59
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.68 E-value=2.4e-05 Score=86.42 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=114.1
Q ss_pred CCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchH-----HHHHHHHhcC--CCCCCCCh
Q 009807 161 SANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQE-----EYVRDQLNRG--MVPDNIDV 233 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V-----~~Lr~~ld~g--~~~~~~Dv 233 (525)
....||+||+.. ...+...|..+......| ...+..++++||..-...-+ ....+....| ++++...+
T Consensus 413 ~kv~fdaPlS~~----c~d~gk~prPlq~~~tll-~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv 487 (741)
T KOG4724|consen 413 AKVPFDAPLSVF----CADQGKTPRPLQIQSTLL-KKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPV 487 (741)
T ss_pred hhCcCCCchhhc----ccccCCCCCChhhhhHHH-HhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCc
Confidence 456899999876 234455555554433334 67899999999884332222 2222222224 24467799
Q ss_pred hhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHH--------HHHhCChhhHHHHHHHHHHHHHHhhhc
Q 009807 234 HCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECAR--------LVRLLPPTEAALLDWAINLMADVAQME 298 (525)
Q Consensus 234 h~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~--------ll~~LP~~nr~lL~~Li~fL~~V~~~s 298 (525)
|.+|+++|.|+|++|..++..+.+.+++.+. +.++++. .....|..+..+....+.-...+..++
T Consensus 488 ~taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~ns 567 (741)
T KOG4724|consen 488 HTAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENS 567 (741)
T ss_pred hHHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccc
Confidence 9999999999999999999999999988873 3344555 556788888888888877778888999
Q ss_pred ccCCCChhhhHHhhhccccCCCC
Q 009807 299 HFNKMNARNVAMVFAPNMTQMSD 321 (525)
Q Consensus 299 ~~NkMt~~NLAiVFaP~Llr~~d 321 (525)
..+.|+..|++.|..|+++...+
T Consensus 568 e~~s~dsSn~~~csrpn~~tvd~ 590 (741)
T KOG4724|consen 568 EETSNDSSNPGFCSRPNALTVDD 590 (741)
T ss_pred ccccccccccCCCCCccccchhh
Confidence 99999999999999999976444
No 60
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=96.60 E-value=0.013 Score=67.63 Aligned_cols=137 Identities=18% Similarity=0.084 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHcCCCCcCC---ceecCC-CcchHHHHHHHHh-cCC--C-C-CCCChh--hhhHHHH--HHHHhC
Q 009807 181 NSVPTILLLMQRHLYAQGGLQAEG---IFRINA-ENGQEEYVRDQLN-RGM--V-P-DNIDVH--CLAGLIK--AWFREL 247 (525)
Q Consensus 181 ~~VP~iL~~~i~~L~e~~GL~~EG---IFRvsG-s~~~V~~Lr~~ld-~g~--~-~-~~~Dvh--~vAslLK--~fLReL 247 (525)
..-|.+..+-+.+| +..|+..|| |-|.++ +...|+.-...|+ .|. + + +..+|| .|...++ .-||.+
T Consensus 369 d~sp~~~~knL~~l-~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~ 447 (1100)
T KOG4271|consen 369 DGSPNIDEKNLVIL-GKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQ 447 (1100)
T ss_pred cCCcccchhhhhhh-hhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhc
Confidence 45789999999998 899999999 999988 4455554444454 342 1 1 345788 5777788 788999
Q ss_pred CCCCCCCCCHHHHHHh---------hhHHH-HHHHHHh--CChhhHH----HHHHHHHHHHHHhhhcccCCCChh-hhHH
Q 009807 248 PTGVLDSLSPEQVMQA---------QSEEE-CARLVRL--LPPTEAA----LLDWAINLMADVAQMEHFNKMNAR-NVAM 310 (525)
Q Consensus 248 PePLlp~~l~~~ll~~---------~~~e~-l~~ll~~--LP~~nr~----lL~~Li~fL~~V~~~s~~NkMt~~-NLAi 310 (525)
+..+.+...+..+..+ +++.. ...++.. .|.+|+. ++.+|+..+..+..++..|.|++. ..+.
T Consensus 448 ~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~a 527 (1100)
T KOG4271|consen 448 GQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAA 527 (1100)
T ss_pred ccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHH
Confidence 9999988887777655 23333 3455555 7888777 778888888888999999999999 9999
Q ss_pred hhhc-cccC
Q 009807 311 VFAP-NMTQ 318 (525)
Q Consensus 311 VFaP-~Llr 318 (525)
|++| .|++
T Consensus 528 CkS~~llL~ 536 (1100)
T KOG4271|consen 528 CKSPHLLLR 536 (1100)
T ss_pred hcChHHHHh
Confidence 9999 4555
No 61
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.49 E-value=0.0029 Score=74.81 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=120.8
Q ss_pred ccccchhhhhhhhcCCCCCCCHHHHH-HHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-C-------CC-CCCh
Q 009807 164 VFGVSTESMQLSFDSRGNSVPTILLL-MQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM-V-------PD-NIDV 233 (525)
Q Consensus 164 vFGv~Le~l~~~~~~~~~~VP~iL~~-~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~-~-------~~-~~Dv 233 (525)
++|+++..+... .......|.++.. +.... ...|....|+||.++....++..+..++... . .. ..++
T Consensus 462 ~~~~~~~~~~~~-~~~~~~~~~~vs~~~~~e~-~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~ 539 (918)
T KOG1453|consen 462 ILGTDLTTLSVN-KDLNSNRPLSVSRSLERES-RSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEV 539 (918)
T ss_pred ccccCccccccc-hhhhcccCcccccchhccc-CCCCcccccccccCCccccccchhhccCccccchhccCCCccccccc
Confidence 888888766221 2334567888888 66665 7889999999999999999999998888632 1 11 3456
Q ss_pred hhhhHHHHHHHHhC--CCCCCCCCCHHHHHHh----------------h-------hH-------HHHHHHHH----hCC
Q 009807 234 HCLAGLIKAWFREL--PTGVLDSLSPEQVMQA----------------Q-------SE-------EECARLVR----LLP 277 (525)
Q Consensus 234 h~vAslLK~fLReL--PePLlp~~l~~~ll~~----------------~-------~~-------e~l~~ll~----~LP 277 (525)
....+.++.|+|.| |.+......|..++.. . .. ..+..+.. .+|
T Consensus 540 ~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP 619 (918)
T KOG1453|consen 540 NLHSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVP 619 (918)
T ss_pred hhccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCC
Confidence 67777999999999 9998888888777731 0 11 34556666 899
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccC-CCCh-hhhHHhhhc----cccCCCC
Q 009807 278 PTEAALLDWAINLMADVAQMEHFN-KMNA-RNVAMVFAP----NMTQMSD 321 (525)
Q Consensus 278 ~~nr~lL~~Li~fL~~V~~~s~~N-kMt~-~NLAiVFaP----~Llr~~d 321 (525)
.....+|.++..|+.+|.....+| .|+. +||..+|++ +++...+
T Consensus 620 ~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~d 669 (918)
T KOG1453|consen 620 FILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPD 669 (918)
T ss_pred HHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCC
Confidence 999999999999999999988888 8888 999999999 5555554
No 62
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.09 E-value=0.063 Score=59.47 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcccCCCChhhhHHhhhccccCCCC
Q 009807 288 INLMADVAQMEHFNKMNARNVAMVFAPNMTQMSD 321 (525)
Q Consensus 288 i~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d 321 (525)
++||..|+.+...+.|-+.|||+||||||+|...
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrske 34 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKE 34 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHH
Confidence 3689999999999999999999999999999654
No 63
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=89.45 E-value=0.055 Score=59.92 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=92.2
Q ss_pred CCCccccchhhhhhhhcCCCCCCCH-HHHHHHHHHHHc---CC--CCcCCceecCCCcchHHHHHHHHhcCCCCCCCChh
Q 009807 161 SANVFGVSTESMQLSFDSRGNSVPT-ILLLMQRHLYAQ---GG--LQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVH 234 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~~~~~~~VP~-iL~~~i~~L~e~---~G--L~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~~Dvh 234 (525)
....||.-|..+ +-..|..||. ++.+|+..+ +. ++ +...|.|+++.+.... -+...+.-.-|+.
T Consensus 206 ~~~~~gl~ltr~---~~~~G~~lpas~~g~~C~s~-~~~~q~~ei~~~~g~l~a~~D~gae------~d~~af~~p~di~ 275 (670)
T KOG1449|consen 206 SNLNCGLVLTRM---EVGLGRGLPASEWGRGCVSH-HAVTQHREILDGNGVLSAVEDEGAE------VDGEAFRWPSDIV 275 (670)
T ss_pred cCccccceecce---eeccccccchhhhccchhcc-ccchhccCCcccCcceecccccccc------ccccccCCcccee
Confidence 345666666555 3345788998 777777665 22 11 3344666655332211 0011222345889
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCHHHHHH-hhhHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhh
Q 009807 235 CLAGLIKAWFRELPTGVLDSLSPEQVMQ-AQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFA 313 (525)
Q Consensus 235 ~vAslLK~fLReLPePLlp~~l~~~ll~-~~~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFa 313 (525)
++.-+++-|+|.+|.|+.. ..|+.=-. ....+...--+...++.|+.+-.+|..||...+.-. .+++|++.
T Consensus 276 v~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~I~~~ 347 (670)
T KOG1449|consen 276 VESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLAIVWS 347 (670)
T ss_pred eeccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------ccceeecC
Confidence 9999999999999999544 22211000 011222445566889999999999999999988633 89999999
Q ss_pred ccccCCCCh
Q 009807 314 PNMTQMSDP 322 (525)
Q Consensus 314 P~Llr~~d~ 322 (525)
|+++|++..
T Consensus 348 ~~~~r~ppt 356 (670)
T KOG1449|consen 348 PNLFRPPPT 356 (670)
T ss_pred CCCCCCCCC
Confidence 999998763
No 64
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=56.04 E-value=4.6 Score=28.88 Aligned_cols=29 Identities=52% Similarity=0.928 Sum_probs=23.3
Q ss_pred cCCCcccccccceEeee-cccccCCCccCC
Q 009807 122 IGLPTNVRHVAHVTFDR-FNGFLGLPVEFE 150 (525)
Q Consensus 122 igwp~~i~~~a~it~~r-~~~~~gl~~~~~ 150 (525)
|+.|.+.+|++|+.|+. ..++.|+|.+++
T Consensus 1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~ 30 (36)
T smart00285 1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWE 30 (36)
T ss_pred CCCCCCCcEEEEeeECCCCCccCCCCHHHH
Confidence 57899999999999998 456788876654
No 65
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=35.84 E-value=19 Score=27.03 Aligned_cols=30 Identities=50% Similarity=0.820 Sum_probs=23.5
Q ss_pred ccCCCcccccccceEeeecc-cccCCCccCC
Q 009807 121 EIGLPTNVRHVAHVTFDRFN-GFLGLPVEFE 150 (525)
Q Consensus 121 ~igwp~~i~~~a~it~~r~~-~~~gl~~~~~ 150 (525)
.|+.|...+|..|+.|+.-. ++.|+|.++.
T Consensus 2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW~ 32 (46)
T cd01093 2 EISSPTNFKHRVHVGFDPQTGEFTGLPEEWQ 32 (46)
T ss_pred ccCCCCCceeeeEeeECCCCCcccCCCHHHH
Confidence 47889999999999999844 4777776654
No 66
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=31.73 E-value=18 Score=26.71 Aligned_cols=20 Identities=45% Similarity=0.866 Sum_probs=17.6
Q ss_pred cccCCCcccccccceEeeec
Q 009807 120 MEIGLPTNVRHVAHVTFDRF 139 (525)
Q Consensus 120 ~~igwp~~i~~~a~it~~r~ 139 (525)
++|++|+..+|++|+-|+..
T Consensus 1 ~~IS~Ptnf~H~~HvG~d~~ 20 (42)
T cd00132 1 MEISTPTDFKHISHVGWDGV 20 (42)
T ss_pred CcccCCCCcCcccccCCCCC
Confidence 46899999999999988875
No 67
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=30.69 E-value=2.9e+02 Score=27.30 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.7
Q ss_pred CCCCHH
Q 009807 181 NSVPTI 186 (525)
Q Consensus 181 ~~VP~i 186 (525)
...|++
T Consensus 204 ~f~pF~ 209 (216)
T PF11600_consen 204 KFLPFF 209 (216)
T ss_pred cccCce
Confidence 345544
No 68
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=30.14 E-value=17 Score=28.67 Aligned_cols=31 Identities=52% Similarity=0.778 Sum_probs=20.0
Q ss_pred ccCCCcccccccceEeeecccc-cCCCccCCC
Q 009807 121 EIGLPTNVRHVAHVTFDRFNGF-LGLPVEFEP 151 (525)
Q Consensus 121 ~igwp~~i~~~a~it~~r~~~~-~gl~~~~~~ 151 (525)
+||-|.+.+|++|+.|+...+. .|+|.+|..
T Consensus 1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~~ 32 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWEK 32 (59)
T ss_dssp TB---EEEEEEEEEEEETTTTEEES--HHHHH
T ss_pred CCCCCCCCcceeeeccCCCccccccCCHHHHh
Confidence 4788999999999999987653 477665543
No 69
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=29.65 E-value=68 Score=35.23 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=29.4
Q ss_pred CChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh
Q 009807 231 IDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ 264 (525)
Q Consensus 231 ~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~~ 264 (525)
.|+|+.+++.|.|+|.+|+|++|.++..-+-.|.
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci 151 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCI 151 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHHh
Confidence 4899999999999999999999988766666554
No 70
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=28.65 E-value=25 Score=39.96 Aligned_cols=123 Identities=12% Similarity=0.025 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHh-cCC---CCCCCChhhhhHHHHHHHHhCCCCCCCCCCHH
Q 009807 183 VPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN-RGM---VPDNIDVHCLAGLIKAWFRELPTGVLDSLSPE 258 (525)
Q Consensus 183 VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld-~g~---~~~~~Dvh~vAslLK~fLReLPePLlp~~l~~ 258 (525)
.+.-..++..+. ...+....|.|+.+| ..+..+++.-+ .+. .+.+...+++.++++.+++.+ +|..+.-++
T Consensus 58 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~--f~~~~~e~q 132 (577)
T KOG4270|consen 58 SDMDSEQLRLFQ-AQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYL--FLGLPVEFQ 132 (577)
T ss_pred hhcchhhhhhhh-hhhhhhhccccccCc--chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhh--hccchhhhc
Confidence 355556777776 688899999999999 44444444333 332 345778999999999999998 666654443
Q ss_pred HHHHhhhH---------HHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccc
Q 009807 259 QVMQAQSE---------EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNM 316 (525)
Q Consensus 259 ~ll~~~~~---------e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~L 316 (525)
..+..... ..-..-..-.|..|+ +-+++.||... ..+.|.-.+...+|.++-
T Consensus 133 ~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~--vp~i~~l~~~~----~l~~e~Gl~eEGlFRi~~ 193 (577)
T KOG4270|consen 133 PDYHRRALSASETVFGVSTEAMQLSYDPRGNF--VPLILHLLQSG----RLLLEGGLKEEGLFRING 193 (577)
T ss_pred cccccccccchhhhhcchHHhhhcccccCCCc--chhhhHhhhhh----hhhhhcCccccceeccCC
Confidence 33221110 001112234555555 55555555553 344455555555555554
No 71
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=23.55 E-value=1.5e+02 Score=24.30 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=33.0
Q ss_pred cCCceecCCCcchHHHHHHHHhcCCCCCCCChhhhhHHHHHHHHhCCC
Q 009807 202 AEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPT 249 (525)
Q Consensus 202 ~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~~Dvh~vAslLK~fLReLPe 249 (525)
.+|-|+++|+ ..++.+.+.|+-.. ++ .+.+++|+++-..|..+|.
T Consensus 4 ~~~~~~v~G~-~~l~~l~~~~~~~l-~~-~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGS-TPLDDLNELLGLDL-PE-EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETT-SBHHHHHHHHTS-T-TT-TTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEec-CCHHHHHHHHCcCC-Cc-cchhhHHHHHHHHcCCCCC
Confidence 3688999997 45777888887642 23 4777999999999999886
No 72
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.46 E-value=89 Score=32.54 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhHHHH
Q 009807 16 PSSSSSTPCAPNNYNSSSSSSDNSKGVLGSNLCIADVVQEREQED 60 (525)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (525)
+|||.|+.|-++ -++|.+.++++-++ |...+--+|..-|+
T Consensus 19 ~SSsnSgS~KgS----d~Sp~~rr~~rY~~-C~dNHGikPP~PEQ 58 (305)
T PF15290_consen 19 PSSSNSGSCKGS----DSSPTMRRSGRYMS-CGDNHGIKPPNPEQ 58 (305)
T ss_pred cccCCCccccCC----CCCCCCCCCCceee-cccCCCCCCCCHHH
Confidence 344444555433 33456666666555 55555444443333
Done!