Query 009807
Match_columns 525
No_of_seqs 397 out of 1735
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tx4_A P50-rhogap; complex (GT 100.0 3.5E-39 1.2E-43 309.7 16.4 172 160-333 4-184 (198)
2 3msx_B RHO GTPase-activating p 100.0 8.5E-39 2.9E-43 307.3 15.1 158 160-323 8-174 (201)
3 1ow3_A RHO-GTPase-activating p 100.0 1.2E-38 4.2E-43 315.5 16.4 189 159-354 39-236 (242)
4 3byi_A RHO GTPase activating p 100.0 2.5E-38 8.7E-43 307.2 13.3 160 160-323 15-186 (214)
5 3fk2_A Glucocorticoid receptor 100.0 4.3E-38 1.5E-42 312.3 14.6 184 160-353 49-244 (246)
6 2osa_A N-chimaerin; RHO-GAP, G 100.0 5.6E-38 1.9E-42 302.2 15.0 158 161-322 5-175 (202)
7 2ee4_A RHO GTPase activating p 100.0 2.5E-38 8.5E-43 306.2 12.2 157 160-321 8-175 (209)
8 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 5.7E-38 1.9E-42 307.8 14.7 157 160-321 17-186 (229)
9 1pbw_A Rhogap domain, phosphat 100.0 3.6E-38 1.2E-42 306.9 11.4 189 160-358 3-204 (216)
10 3kuq_A RHO GTPase-activating p 100.0 3.9E-37 1.3E-41 302.0 15.6 160 158-321 14-183 (228)
11 3eap_A RHO GTPase-activating p 100.0 6.9E-37 2.3E-41 307.8 11.7 160 160-321 60-226 (271)
12 1f7c_A Rhogap protein; GTPase 100.0 4.7E-37 1.6E-41 302.0 8.9 192 162-359 16-223 (231)
13 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.5E-35 5E-40 285.5 17.8 150 167-321 4-164 (201)
14 2xs6_A Phosphatidylinositol 3- 100.0 1.3E-36 4.3E-41 296.4 1.5 155 160-322 18-176 (214)
15 3qis_A Inositol polyphosphate 100.0 4.1E-34 1.4E-38 298.9 14.2 166 181-348 197-364 (366)
16 3cxl_A N-chimerin; SH2, RHO-GA 100.0 1.4E-34 4.8E-39 310.7 10.5 158 161-322 266-436 (463)
17 2odb_B Serine/threonine-protei 75.2 0.75 2.6E-05 31.7 0.5 29 121-149 1-30 (35)
18 2qme_I CRIB domain of the seri 74.0 0.93 3.2E-05 31.4 0.8 30 121-150 1-31 (36)
19 2ov2_I Serine/threonine-protei 60.4 4 0.00014 28.0 1.8 31 121-151 1-32 (35)
20 1f3m_A Serine/threonine-protei 52.9 3.4 0.00012 33.7 0.4 59 119-194 3-62 (80)
21 2p4p_A Hypothetical protein HD 29.6 57 0.002 26.0 4.3 48 202-250 7-54 (86)
22 1cee_B Wiskott-aldrich syndrom 24.0 22 0.00076 27.1 0.8 32 117-148 4-37 (59)
23 3llb_A Uncharacterized protein 23.6 1.1E+02 0.0037 24.2 4.9 46 202-250 7-52 (83)
24 2pls_A CBS domain protein; APC 20.4 1.3E+02 0.0044 23.8 4.8 48 202-250 7-56 (86)
25 2p13_A CBS domain; alpha-beta 20.2 1.3E+02 0.0043 24.1 4.7 47 202-250 13-60 (90)
No 1
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=3.5e-39 Score=309.74 Aligned_cols=172 Identities=24% Similarity=0.337 Sum_probs=150.4
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCC---CCChhhh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPD---NIDVHCL 236 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~---~~Dvh~v 236 (525)
.+.++||++|+++... ......||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|...+ ..|+|++
T Consensus 4 ~~~~vFG~~L~~~~~~-~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 4 LPNQQFGVSLQHLQEK-NPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp CTTCCTTSCHHHHHHH-STTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCccCCcHHHHHhh-CCCCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 4678999999998532 222358999999999999 6899999999999999999999999999987543 3589999
Q ss_pred hHHHHHHHHhCCCCCCCCCCHHHHHHhh------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHH
Q 009807 237 AGLIKAWFRELPTGVLDSLSPEQVMQAQ------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAM 310 (525)
Q Consensus 237 AslLK~fLReLPePLlp~~l~~~ll~~~------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAi 310 (525)
|++||.|||+||+||+|.++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~ 161 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 161 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHh
Confidence 9999999999999999999999999864 4567899999999999999999999999999999999999999999
Q ss_pred hhhccccCCCChhHHHHHHHHHH
Q 009807 311 VFAPNMTQMSDPLTALMYAVQVM 333 (525)
Q Consensus 311 VFaP~Llr~~d~~~~l~~~~~v~ 333 (525)
||||+|++++++...+.......
T Consensus 162 vf~P~Ll~~~~~~~~~~~~~~~~ 184 (198)
T 1tx4_A 162 VFGPNLLWAKDAAITLKAINPIN 184 (198)
T ss_dssp HHHHHHCCCSSHHHHHHTHHHHH
T ss_pred hhcccccCCCCccccHHHHHHHH
Confidence 99999999988655444333333
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.5e-39 Score=307.29 Aligned_cols=158 Identities=23% Similarity=0.376 Sum_probs=143.1
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC--CCCCChhhhh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV--PDNIDVHCLA 237 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~--~~~~Dvh~vA 237 (525)
..+.+||++|+++.. ...||.+|.+|++|| +++|+++|||||++|+..++++|++.||.|.. .+..|+|+||
T Consensus 8 ~~~~vFG~~L~~~~~-----~~~vP~~v~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va 81 (201)
T 3msx_B 8 MPGQLFGISLPNICE-----NDNLPKPVLDMLFFL-NQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIA 81 (201)
T ss_dssp --CCCTTSCHHHHSG-----GGCCCHHHHHHHHHH-HHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHH
T ss_pred CCCCeeCCcHHHHhc-----CCCCCHHHHHHHHHH-HHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHH
Confidence 567899999999842 235999999999999 78999999999999999999999999999864 3578999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHH
Q 009807 238 GLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAM 310 (525)
Q Consensus 238 slLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAi 310 (525)
++||.|||+||+||+|.++|+.|+.+. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+
T Consensus 82 ~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~ 161 (201)
T 3msx_B 82 SVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAV 161 (201)
T ss_dssp HHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhh
Confidence 999999999999999999999999874 3456889999999999999999999999999999999999999999
Q ss_pred hhhccccCCCChh
Q 009807 311 VFAPNMTQMSDPL 323 (525)
Q Consensus 311 VFaP~Llr~~d~~ 323 (525)
||||+|+|+++..
T Consensus 162 vf~P~ll~~~~~~ 174 (201)
T 3msx_B 162 CVAPSILWPPASS 174 (201)
T ss_dssp HHHHHHCCCCTTS
T ss_pred hhhccccCCCCCC
Confidence 9999999988753
No 3
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=1.2e-38 Score=315.48 Aligned_cols=189 Identities=25% Similarity=0.348 Sum_probs=158.2
Q ss_pred CCCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCC--C-CChhh
Q 009807 159 SASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPD--N-IDVHC 235 (525)
Q Consensus 159 ~~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~--~-~Dvh~ 235 (525)
.....+||++|+++... ...+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|...+ . .|+|+
T Consensus 39 ~~~~~vFG~~L~~~~~~-~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~ 116 (242)
T 1ow3_A 39 PLPNQQFGVSLQHLQEK-NPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHL 116 (242)
T ss_dssp CCTTCCSSSCHHHHHHH-STTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred CCCCCccCCcHHHHHhh-cCCCCCCCHHHHHHHHHH-HHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHH
Confidence 45678999999998532 233458999999999999 7899999999999999999999999999997543 3 59999
Q ss_pred hhHHHHHHHHhCCCCCCCCCCHHHHHHhh------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807 236 LAGLIKAWFRELPTGVLDSLSPEQVMQAQ------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA 309 (525)
Q Consensus 236 vAslLK~fLReLPePLlp~~l~~~ll~~~------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA 309 (525)
+|++||.|||+||+||+|.++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||
T Consensus 117 va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 196 (242)
T 1ow3_A 117 PAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 196 (242)
T ss_dssp HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhH
Confidence 99999999999999999999999999864 456789999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 009807 310 MVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVES 354 (525)
Q Consensus 310 iVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~if~~ 354 (525)
+||||+|++++++...+....... .++ ++|+++++.||..
T Consensus 197 ivf~P~Ll~~~~~~~~~~~~~~~~----~~v-~~LI~~~~~iF~~ 236 (242)
T 1ow3_A 197 VVFGPNLLWAKDAAITLKAINPIN----TFT-KFLLDHQGELFPS 236 (242)
T ss_dssp HHHHHHHCCCSSHHHHHHTHHHHH----HHH-HHHHHTHHHHC--
T ss_pred HhhcchhCCCCCccccHHHHHHHH----HHH-HHHHHHHHHHcCC
Confidence 999999999988655544433333 333 3334445666554
No 4
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=307.17 Aligned_cols=160 Identities=22% Similarity=0.363 Sum_probs=143.9
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC--C---CCChh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP--D---NIDVH 234 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~--~---~~Dvh 234 (525)
...++||++|+++.. ..+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||.|... + ..|+|
T Consensus 15 ~~~~vFG~~L~~~~~---~~~~~vP~~v~~~i~~l-~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh 90 (214)
T 3byi_A 15 IKDQIFGSHLHKVCE---RENSTVPWFVKQCIEAV-EKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIH 90 (214)
T ss_dssp CCCCSTTSCHHHHHH---HHTCSSCHHHHHHHHHH-HHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHH
T ss_pred CcCCccCCcHHHHHH---HcCCCCChHHHHHHHHH-HHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchH
Confidence 456799999999843 24578999999999999 689999999999999999999999999998533 2 24999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhh
Q 009807 235 CLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307 (525)
Q Consensus 235 ~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~N 307 (525)
+||++||.|||+||+||+|.++|+.|+.+. +.+.++.++..||+.|+.+|.||+.||++|+++++.|||++.|
T Consensus 91 ~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~N 170 (214)
T 3byi_A 91 VVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQS 170 (214)
T ss_dssp HHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHH
Confidence 999999999999999999999999999864 3456889999999999999999999999999999999999999
Q ss_pred hHHhhhccccCCCChh
Q 009807 308 VAMVFAPNMTQMSDPL 323 (525)
Q Consensus 308 LAiVFaP~Llr~~d~~ 323 (525)
||+||||+|+++....
T Consensus 171 La~vf~P~Ll~~~~~~ 186 (214)
T 3byi_A 171 LGIVFGPTLLRAENET 186 (214)
T ss_dssp HHHHHHHHHHCCTTSS
T ss_pred hHHHhccccCCCCCcc
Confidence 9999999999987643
No 5
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.3e-38 Score=312.26 Aligned_cols=184 Identities=19% Similarity=0.343 Sum_probs=154.3
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCC----CCChhh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPD----NIDVHC 235 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~----~~Dvh~ 235 (525)
..+.+||++|+.+. ..+..||.+|.+|++|| +++|+++|||||++|+..+++.|++.||.|...+ ++|+|+
T Consensus 49 ~~~~vFGv~L~~~~----~~~~~vP~iv~~~i~~l-~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~ 123 (246)
T 3fk2_A 49 WESNYFGVPLTTVV----TPEKPIPIFIERCIEYI-EATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNT 123 (246)
T ss_dssp CCCSSTTSCGGGGC----CSSSCSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHH
T ss_pred cCCCeeCCCHHHHh----cCCCCCChHHHHHHHHH-HHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHH
Confidence 46789999999983 24568999999999999 7899999999999999999999999999986442 579999
Q ss_pred hhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhh
Q 009807 236 LAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNV 308 (525)
Q Consensus 236 vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NL 308 (525)
||++||.|||+||+||||+.+|+.|+.+. +.+.++.++..||+.|+.+|.||+.||++|+++++.|||++.||
T Consensus 124 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NL 203 (246)
T 3fk2_A 124 VAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203 (246)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHh
Confidence 99999999999999999999999999874 34568899999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCCh-hHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009807 309 AMVFAPNMTQMSDP-LTALMYAVQVMNFLKTLIIKTLKEREDSLVE 353 (525)
Q Consensus 309 AiVFaP~Llr~~d~-~~~l~~~~~v~~~l~~LI~~ll~e~~~~if~ 353 (525)
|+||||+|+|+... ...+....... .+|+. |+++++.||.
T Consensus 204 Aivf~P~Llrp~~~~~~~~~~~~~~~----~ive~-LI~~~~~iF~ 244 (246)
T 3fk2_A 204 SICFWPTLMRPDFSTMDALTATRTYQ----TIIEL-FIQQCPFFFY 244 (246)
T ss_dssp HHHHHHHHHCCCSSSSCHHHHHHHHH----HHHHH-HHHTHHHHHC
T ss_pred HHHhcccccCCCCccHHHHHHHHHHH----HHHHH-HHHhHHHhcC
Confidence 99999999997653 33343333333 33333 3334555554
No 6
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=302.23 Aligned_cols=158 Identities=22% Similarity=0.391 Sum_probs=140.8
Q ss_pred CCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcC-C--CC---CCCChh
Q 009807 161 SANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRG-M--VP---DNIDVH 234 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g-~--~~---~~~Dvh 234 (525)
..++||++|+++... .+..||.+|.+|+++| +++|+++|||||++|+..++++|++.||++ . +. ...|+|
T Consensus 5 ~~~vFG~~L~~~~~~---~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~ 80 (202)
T 2osa_A 5 VKKVYSCDLTTLVKA---HTTKRPMVVDMCIREI-ESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDIN 80 (202)
T ss_dssp --CCTTSCHHHHHHH---HTCSSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHH
T ss_pred CCCccCCChHHHHHH---cCCCCCcHHHHHHHHH-HHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHH
Confidence 357999999998532 3567999999999999 789999999999999999999999999984 2 22 236999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhh
Q 009807 235 CLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307 (525)
Q Consensus 235 ~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~N 307 (525)
+||++||.|||+||+||+|.++|+.|+.+. +.+.++.++..||+.|+.+|.||+.||++|+++++.|||++.|
T Consensus 81 ~va~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~N 160 (202)
T 2osa_A 81 IITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAEN 160 (202)
T ss_dssp HHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHH
Confidence 999999999999999999999999999864 3456889999999999999999999999999999999999999
Q ss_pred hHHhhhccccCCCCh
Q 009807 308 VAMVFAPNMTQMSDP 322 (525)
Q Consensus 308 LAiVFaP~Llr~~d~ 322 (525)
||+||||+|+++++.
T Consensus 161 La~vf~P~Ll~~~~~ 175 (202)
T 2osa_A 161 LGIVFGPTLMRSPEL 175 (202)
T ss_dssp HHHHHHHHHCCCCCC
T ss_pred HHHHHccccCCCCCc
Confidence 999999999998763
No 7
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=2.5e-38 Score=306.20 Aligned_cols=157 Identities=19% Similarity=0.406 Sum_probs=143.0
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCC----CCChhh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPD----NIDVHC 235 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~----~~Dvh~ 235 (525)
....+||++|+++. ..+..||.+|.+|++|| +++|+++|||||++|+..+++.|++.||+|...+ ++|+|+
T Consensus 8 ~~~~~FG~~L~~~~----~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2ee4_A 8 WESNYFGMPLQDLV----TAEKPIPLFVEKCVEFI-EDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNA 82 (209)
T ss_dssp SCCSSSSSCHHHHS----CSSCCSCHHHHHHHHHH-HHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHH
T ss_pred CCCCeeCCcHHHHH----hcCCCCChHHHHHHHHH-HHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHH
Confidence 45689999999973 23467999999999999 7899999999999999999999999999986543 579999
Q ss_pred hhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhh
Q 009807 236 LAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNV 308 (525)
Q Consensus 236 vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NL 308 (525)
||++||.|||+||+||+|.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 83 va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 162 (209)
T 2ee4_A 83 VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162 (209)
T ss_dssp HHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 99999999999999999999999999864 34568899999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCC
Q 009807 309 AMVFAPNMTQMSD 321 (525)
Q Consensus 309 AiVFaP~Llr~~d 321 (525)
|+||||+|++++.
T Consensus 163 aivf~P~L~~~~~ 175 (209)
T 2ee4_A 163 SICFWPTLMRPDF 175 (209)
T ss_dssp HHHHHHHHSCCCC
T ss_pred HHHhcccccCCCC
Confidence 9999999999765
No 8
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=5.7e-38 Score=307.85 Aligned_cols=157 Identities=26% Similarity=0.459 Sum_probs=139.9
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCC------CCCh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPD------NIDV 233 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~------~~Dv 233 (525)
..+++||++|+++.. ..+..||.+|.+|++|| +++|+ +|||||++|+..++++|++.||.|...+ ..|+
T Consensus 17 ~~~~vFG~~L~~~~~---~~~~~vP~iv~~~i~~i-~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dv 91 (229)
T 3iug_A 17 QGERVFGCDLGEHLL---NSGFEVPQVLQSCTAFI-ERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDI 91 (229)
T ss_dssp -CCCSTTSCHHHHHH---HHCCSSCHHHHHHHHHH-HHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCH
T ss_pred CCCCeECcchHHHHH---hcCCCCCHHHHHHHHHH-HHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccch
Confidence 456899999998743 34667999999999999 78999 8999999999999999999999986432 2499
Q ss_pred hhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChh
Q 009807 234 HCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNAR 306 (525)
Q Consensus 234 h~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~ 306 (525)
|+||++||.|||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.
T Consensus 92 h~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 171 (229)
T 3iug_A 92 HSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171 (229)
T ss_dssp HHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence 9999999999999999999999999999873 345678899999999999999999999999999999999999
Q ss_pred hhHHhhhccccCCCC
Q 009807 307 NVAMVFAPNMTQMSD 321 (525)
Q Consensus 307 NLAiVFaP~Llr~~d 321 (525)
|||+||||+|+++++
T Consensus 172 NLAivf~P~Ll~~~~ 186 (229)
T 3iug_A 172 NLAIVWAPNLLRSKQ 186 (229)
T ss_dssp HHHHHHHHHHCCC--
T ss_pred HHHHHHhccccCCCc
Confidence 999999999999875
No 9
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=3.6e-38 Score=306.90 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=144.7
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC---CCCCCChhhh
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM---VPDNIDVHCL 236 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~---~~~~~Dvh~v 236 (525)
+...+||++|+++..+. ..+..||.+|.+|++|| +++|+++|||||++|+..+ ++|++.||.|. +...+|+|+|
T Consensus 3 ~d~~~fGv~L~~l~~~~-~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~v 79 (216)
T 1pbw_A 3 ADVEQQALTLPDLAEQF-APPDIAPPLLIKLVEAI-EKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVL 79 (216)
T ss_dssp ---------CCCHHHHC-CTTSCSCHHHHHHHHHH-HHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHH
T ss_pred cccccCCCcHHHHHhcc-CCCCCcCHHHHHHHHHH-HHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHH
Confidence 34569999999985432 34578999999999999 6799999999999999999 99999999974 2346899999
Q ss_pred hHHHHHHHHhCCCCCCCCCCHHHHHHhhh--------HHHHHHHHH--hCChhhHHHHHHHHHHHHHHhhhcccCCCChh
Q 009807 237 AGLIKAWFRELPTGVLDSLSPEQVMQAQS--------EEECARLVR--LLPPTEAALLDWAINLMADVAQMEHFNKMNAR 306 (525)
Q Consensus 237 AslLK~fLReLPePLlp~~l~~~ll~~~~--------~e~l~~ll~--~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~ 306 (525)
|++||.|||+||+||||+++|+.|+.+.+ .+.++.++. +||+.|+.+|+||+.||++|+++++.|||++.
T Consensus 80 a~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~ 159 (216)
T 1pbw_A 80 ADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNAR 159 (216)
T ss_dssp HHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHH
Confidence 99999999999999999999999998753 345788898 99999999999999999999999999999999
Q ss_pred hhHHhhhccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCC
Q 009807 307 NVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESIPVS 358 (525)
Q Consensus 307 NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~~ll~e~~~~if~~~p~~ 358 (525)
|||+||||+|+++++...... .+...+| ++|+++++.||...|..
T Consensus 160 NLAivf~P~Ll~~~~~~~~~~------~~~~~vv-e~LI~~~~~iF~~~P~~ 204 (216)
T 1pbw_A 160 VLSEIFSPMLFRFSAASSDNT------ENLIKVI-EILISTEWNERQPAPAL 204 (216)
T ss_dssp HHHHHHHHHHHTCSSCCHHHH------HHHHHHH-HHHHHTTC---------
T ss_pred HHHHHHhhhcCCCCCCchhhh------HHHHHHH-HHHHhhhHHhcCCCCCC
Confidence 999999999999887543321 2222333 44455577777776543
No 10
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=302.00 Aligned_cols=160 Identities=21% Similarity=0.322 Sum_probs=144.5
Q ss_pred CCCCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC---CCCCCChh
Q 009807 158 PSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM---VPDNIDVH 234 (525)
Q Consensus 158 ~~~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~---~~~~~Dvh 234 (525)
....+++||++|+++.. +.+..||.+|.+|++|| +++|+++|||||++|+..+|++|++.|+.+. ..+.+|+|
T Consensus 14 ~~~~~~vFGv~L~~~~~---~~~~~vP~~v~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~ 89 (228)
T 3kuq_A 14 LYFQGSVFGVPLTVNVQ---RTGQPLPQSIQQAMRYL-RNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAY 89 (228)
T ss_dssp CBCTTSSTTCCHHHHHH---HHSSSSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHH
T ss_pred CCCCCCEECCchHHHHH---HcCCCCCHHHHHHHHHH-HHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHH
Confidence 33567899999998743 24578999999999999 6889999999999999999999999998642 34578999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhh
Q 009807 235 CLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307 (525)
Q Consensus 235 ~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~N 307 (525)
+||++||.|||+||+||||.++|+.|+.+. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|
T Consensus 90 ~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 169 (228)
T 3kuq_A 90 DVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTN 169 (228)
T ss_dssp HHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhH
Confidence 999999999999999999999999999864 3467899999999999999999999999999999999999999
Q ss_pred hHHhhhccccCCCC
Q 009807 308 VAMVFAPNMTQMSD 321 (525)
Q Consensus 308 LAiVFaP~Llr~~d 321 (525)
||+||||+||+.+.
T Consensus 170 LAivf~P~Ll~~~~ 183 (228)
T 3kuq_A 170 LAVCLAPSLFHLNT 183 (228)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred hHHHHhhhhcCCCC
Confidence 99999999999764
No 11
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=307.83 Aligned_cols=160 Identities=26% Similarity=0.416 Sum_probs=131.7
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCC-CCCCChhhhhH
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMV-PDNIDVHCLAG 238 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~-~~~~Dvh~vAs 238 (525)
..+.+||++|+++.......+..||.+|.+|+.|| ++ |+++|||||++|+..++++|++.||.|.. ....|+|+||+
T Consensus 60 ~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~l-e~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~va~ 137 (271)
T 3eap_A 60 IGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL-ED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAG 137 (271)
T ss_dssp -CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHH-GG-GTTC--------CHHHHHHHHHHHHHC-----CCCHHHHHH
T ss_pred CCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHH-Hh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCcccccHHHHHH
Confidence 46789999999974332234567999999999999 55 89999999999999999999999999864 35789999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHhhh------HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhh
Q 009807 239 LIKAWFRELPTGVLDSLSPEQVMQAQS------EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVF 312 (525)
Q Consensus 239 lLK~fLReLPePLlp~~l~~~ll~~~~------~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVF 312 (525)
+||.|||+||+||||+++|+.|+.+.+ ...++.++..||+.|+.+|.||+.||++|+++++.|||++.|||+||
T Consensus 138 lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 217 (271)
T 3eap_A 138 LLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIF 217 (271)
T ss_dssp HHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 999999999999999999999998743 23456678899999999999999999999999999999999999999
Q ss_pred hccccCCCC
Q 009807 313 APNMTQMSD 321 (525)
Q Consensus 313 aP~Llr~~d 321 (525)
||+||++++
T Consensus 218 ~P~Ll~~~~ 226 (271)
T 3eap_A 218 APNLLQTSE 226 (271)
T ss_dssp HHHHHTCCC
T ss_pred HhHhccCCC
Confidence 999999886
No 12
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=4.7e-37 Score=302.01 Aligned_cols=192 Identities=18% Similarity=0.308 Sum_probs=138.3
Q ss_pred CCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHH-HHhcCC----CC---CCCCh
Q 009807 162 ANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRD-QLNRGM----VP---DNIDV 233 (525)
Q Consensus 162 ~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~-~ld~g~----~~---~~~Dv 233 (525)
.++||+||.........-...+|.+|.+|++|| +++|+++|||||++|+..+|++|++ .+|.|. +. ..+|+
T Consensus 16 ~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~l-e~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dv 94 (231)
T 1f7c_A 16 EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAV-ETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEI 94 (231)
T ss_dssp ---------------CCSSHHHHHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCH
T ss_pred CCccCCcchhccccccccCCcCccHHHHHHHHH-HHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccH
Confidence 459999998752111111245899999999999 7899999999999999999999986 578763 12 24799
Q ss_pred hhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChh
Q 009807 234 HCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNAR 306 (525)
Q Consensus 234 h~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~ 306 (525)
|+||++||.|||+||+||||+++|+.|+.+. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.
T Consensus 95 h~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 174 (231)
T 1f7c_A 95 KTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVA 174 (231)
T ss_dssp HHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 9999999999999999999999999999874 345689999999999999999999999999999999999999
Q ss_pred hhHHhhhccccCCCChh-HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCC
Q 009807 307 NVAMVFAPNMTQMSDPL-TALMYAVQVMNFLKTLIIKTLKEREDSLVESIPVSR 359 (525)
Q Consensus 307 NLAiVFaP~Llr~~d~~-~~l~~~~~v~~~l~~LI~~ll~e~~~~if~~~p~~~ 359 (525)
|||+||||+|++++... ..++... +... +.++|+++++.||...+...
T Consensus 175 NLAivf~P~Ll~~~~~~~~~~~~~~----~~~~-vve~LI~~~~~iF~~~~~~~ 223 (231)
T 1f7c_A 175 NLGVVFGPTLLRPQEETVAAIMDIK----FQNI-VIEILIENHEKIFNTVPETP 223 (231)
T ss_dssp HHHHHHHHHHSCC---CCSGGGGHH----HHHH-HHHHHHHTHHHHHHSCCC--
T ss_pred HHHHHhccccCCCCcccHHHHHHHH----HHHH-HHHHHHHHHHHhCCCCCCCC
Confidence 99999999999987532 1222111 2222 33444555666766655433
No 13
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=285.49 Aligned_cols=150 Identities=22% Similarity=0.348 Sum_probs=134.1
Q ss_pred cchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCC---CCC-ChhhhhHHHHH
Q 009807 167 VSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVP---DNI-DVHCLAGLIKA 242 (525)
Q Consensus 167 v~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~---~~~-Dvh~vAslLK~ 242 (525)
..|+++ ....+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|... ..+ |+|+||++||.
T Consensus 4 g~L~~~---~~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~ 79 (201)
T 2ovj_A 4 GMLADF---VSQTSPMIPSIVVHCVNEI-EQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKD 79 (201)
T ss_dssp CCGGGG---CCSSSSCCCHHHHHHHHHH-HHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHH
T ss_pred CcHHHH---hcccCCCCChHHHHHHHHH-HHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHH
Confidence 456666 2456789999999999999 788999999999999999999999999998532 344 99999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhcc
Q 009807 243 WFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPN 315 (525)
Q Consensus 243 fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~ 315 (525)
|||+||+||+|.++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++ +.|||++.|||+||||+
T Consensus 80 flreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ 158 (201)
T 2ovj_A 80 FLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPT 158 (201)
T ss_dssp HHHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhh
Confidence 9999999999999999999874 335688999999999999999999999999996 68999999999999999
Q ss_pred ccCCCC
Q 009807 316 MTQMSD 321 (525)
Q Consensus 316 Llr~~d 321 (525)
|++++.
T Consensus 159 ll~~~~ 164 (201)
T 2ovj_A 159 IVAHAV 164 (201)
T ss_dssp HTCCSS
T ss_pred hcCCCC
Confidence 998654
No 14
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=296.37 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=124.4
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCCCCChhhhhHH
Q 009807 160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGL 239 (525)
Q Consensus 160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~~Dvh~vAsl 239 (525)
...++||++|+++..++ ..+..||.+|.+|++|| +++|+++|||||++|+. |++.++ ..+.+.+|+|+||++
T Consensus 18 ~~~~vFGv~L~~l~~~~-~~~~~vP~iv~~~i~~l-~~~Gl~~eGIfR~sG~~-----lr~~~~-~~dl~~~dvh~va~l 89 (214)
T 2xs6_A 18 LYFQSMGLTLPDLPEQF-SPPDVAPPLLVKLVEAI-ERTGLDSESHYRPELPA-----PRTDWS-LSDVDQWDTAALADG 89 (214)
T ss_dssp -------CCCCCHHHHC-CTTCCSCHHHHHHHHHH-HHHCTTCSGGGCCSCCC-----CCCCCC-CTTGGGCCHHHHHHH
T ss_pred CCCcccCcCHHHHHHhh-CCCCCCCHHHHHHHHHH-HHhCCCCCCCeeeCHHH-----HHhccc-cCCCccCCHHHHHHH
Confidence 35579999999985433 34467999999999999 78899999999999998 333221 122346899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHhhhH----HHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhcc
Q 009807 240 IKAWFRELPTGVLDSLSPEQVMQAQSE----EECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPN 315 (525)
Q Consensus 240 LK~fLReLPePLlp~~l~~~ll~~~~~----e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~ 315 (525)
||.|||+||+||||+++|+.|+++.+. +.+..++..||+.|+.+|+||+.||++|+++++.|||++.|||+||||+
T Consensus 90 LK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 169 (214)
T 2xs6_A 90 IKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPL 169 (214)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhh
Confidence 999999999999999999999988542 2345788999999999999999999999999999999999999999999
Q ss_pred ccCCCCh
Q 009807 316 MTQMSDP 322 (525)
Q Consensus 316 Llr~~d~ 322 (525)
|||+++.
T Consensus 170 Ll~~~~~ 176 (214)
T 2xs6_A 170 LLRAPPP 176 (214)
T ss_dssp HHC----
T ss_pred hcCCccc
Confidence 9998863
No 15
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=4.1e-34 Score=298.94 Aligned_cols=166 Identities=16% Similarity=0.243 Sum_probs=138.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCC-CCChhhhhHHHHHHHHhCCCCCCCCCCHHH
Q 009807 181 NSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPD-NIDVHCLAGLIKAWFRELPTGVLDSLSPEQ 259 (525)
Q Consensus 181 ~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~-~~Dvh~vAslLK~fLReLPePLlp~~l~~~ 259 (525)
..||.+|.+|++|| +++|+++|||||++|+..+++.|++.||.|...+ ..|+|++|++||.|||+||+||||+.+|+.
T Consensus 197 ~~iP~~v~~~i~~l-~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~dvh~va~lLK~fLReLPePLi~~~ly~~ 275 (366)
T 3qis_A 197 LQVPKEIWLLVDHL-FKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQR 275 (366)
T ss_dssp CSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSCCSCHHHHHHHHHHHHHHCSSCSSCHHHHHH
T ss_pred CCcChHHHHHHHHH-HhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 48999999999999 6899999999999999999999999999987653 459999999999999999999999999999
Q ss_pred HHHhhh-HHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChhHHHHHHHHHHHHHHH
Q 009807 260 VMQAQS-EEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKT 338 (525)
Q Consensus 260 ll~~~~-~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~ 338 (525)
|+.+.+ .+.++.++..||+.|+.+|.||+.||++|+++++.|||+++|||+||||+|||+++....... .........
T Consensus 276 ~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~~~~~~-~~~~~~~v~ 354 (366)
T 3qis_A 276 CLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLMARQT-PSDRQRAIQ 354 (366)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC---------CHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcchhhhh-HHHHHHHHH
Confidence 999864 456888999999999999999999999999999999999999999999999998874322221 112223335
Q ss_pred HHHHHHhhcc
Q 009807 339 LIIKTLKERE 348 (525)
Q Consensus 339 LI~~ll~e~~ 348 (525)
+|.++|++.+
T Consensus 355 fi~~fL~~~~ 364 (366)
T 3qis_A 355 FLLGFLLGSE 364 (366)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhccCC
Confidence 5555555543
No 16
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=1.4e-34 Score=310.69 Aligned_cols=158 Identities=22% Similarity=0.387 Sum_probs=142.0
Q ss_pred CCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC---CC---CCCChh
Q 009807 161 SANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM---VP---DNIDVH 234 (525)
Q Consensus 161 ~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~---~~---~~~Dvh 234 (525)
...+||++|+++.. ..+..||.+|.+|+++| +++|+++|||||++|+..+|++|++.||.+. +. ...|+|
T Consensus 266 ~~~vFG~~L~~~~~---~~~~~vP~iv~~~i~~l-e~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~ 341 (463)
T 3cxl_A 266 VKKVYSCDLTTLVK---AHTTKRPMVVDMCIREI-ESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDIN 341 (463)
T ss_dssp CCCCTTSCHHHHHH---HHTCSSCHHHHHHHHHH-HHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHH
T ss_pred cccccccccchhhh---ccCCCCCeeHHHHHHHH-HhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcc
Confidence 46799999998843 24578999999999999 7899999999999999999999999999742 22 235999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhh
Q 009807 235 CLAGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARN 307 (525)
Q Consensus 235 ~vAslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~N 307 (525)
+||++||.|||+||+||||.++|+.|+++. +.+.++.++..||+.|+.+|.||+.||++|+++++.|||++.|
T Consensus 342 ~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N 421 (463)
T 3cxl_A 342 IITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAEN 421 (463)
T ss_dssp HHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred hhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 999999999999999999999999999874 3456889999999999999999999999999999999999999
Q ss_pred hHHhhhccccCCCCh
Q 009807 308 VAMVFAPNMTQMSDP 322 (525)
Q Consensus 308 LAiVFaP~Llr~~d~ 322 (525)
||+||||+|+++++.
T Consensus 422 LAivf~P~Ll~~~~~ 436 (463)
T 3cxl_A 422 LGIVFGPTLMRSPEL 436 (463)
T ss_dssp HHHHHHHHHCCCCCS
T ss_pred HHHHhhccccCCCCc
Confidence 999999999998763
No 17
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=75.22 E-value=0.75 Score=31.70 Aligned_cols=29 Identities=45% Similarity=0.883 Sum_probs=24.3
Q ss_pred ccCCCcccccccceEeeeccc-ccCCCccC
Q 009807 121 EIGLPTNVRHVAHVTFDRFNG-FLGLPVEF 149 (525)
Q Consensus 121 ~igwp~~i~~~a~it~~r~~~-~~gl~~~~ 149 (525)
+|++|++.+|+.|+.|+...| +.|+|.++
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW 30 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQW 30 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCHHH
T ss_pred CCcCCCCCcCeeeeeECCCCCcccCCCHHH
Confidence 478999999999999998877 77776654
No 18
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=73.97 E-value=0.93 Score=31.44 Aligned_cols=30 Identities=43% Similarity=0.907 Sum_probs=20.3
Q ss_pred ccCCCcccccccceEeeeccc-ccCCCccCC
Q 009807 121 EIGLPTNVRHVAHVTFDRFNG-FLGLPVEFE 150 (525)
Q Consensus 121 ~igwp~~i~~~a~it~~r~~~-~~gl~~~~~ 150 (525)
+|++|++.+|+.|+.|+...| +.|+|.++.
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~ 31 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWA 31 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTBCC-------
T ss_pred CCcCCCCCCCeeEcccCCCCCcccCCCHHHH
Confidence 478999999999999998777 677776654
No 19
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=60.41 E-value=4 Score=27.98 Aligned_cols=31 Identities=39% Similarity=0.769 Sum_probs=25.4
Q ss_pred ccCCCcccccccceEeeeccc-ccCCCccCCC
Q 009807 121 EIGLPTNVRHVAHVTFDRFNG-FLGLPVEFEP 151 (525)
Q Consensus 121 ~igwp~~i~~~a~it~~r~~~-~~gl~~~~~~ 151 (525)
+|+.|++.+|+.|+.|+.-.| +.|+|.++..
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ 32 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQS 32 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCGGGTT
T ss_pred CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHH
Confidence 478899999999999998665 7888877654
No 20
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=52.95 E-value=3.4 Score=33.72 Aligned_cols=59 Identities=25% Similarity=0.492 Sum_probs=35.7
Q ss_pred ccccCCCcccccccceEeeeccc-ccCCCccCCCCCCCCCCCCCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHH
Q 009807 119 SMEIGLPTNVRHVAHVTFDRFNG-FLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHL 194 (525)
Q Consensus 119 ~~~igwp~~i~~~a~it~~r~~~-~~gl~~~~~~~~p~~~~~~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L 194 (525)
.++|++|++.+|+.|+.|+...| +.|+|.+|..-.. --|++-+++. .-|.+|..++++-
T Consensus 3 ~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~---------~sGIs~~e~~--------~np~~v~dvl~f~ 62 (80)
T 1f3m_A 3 RPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ---------TSNITKSEQK--------KNPQAVLDVLEFY 62 (80)
T ss_dssp ------CCSSEEEEEEEEETTTTEEESCCHHHHHHHH---------TSCCCHHHHH--------HCHHHHHHHHHHH
T ss_pred CCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHH---------HcCCCHHHHH--------HCHHHHHHHHHHh
Confidence 46799999999999999998776 6777766553221 1244544441 1677787777764
No 21
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=29.64 E-value=57 Score=25.99 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=36.2
Q ss_pred cCCceecCCCcchHHHHHHHHhcCCCCCCCChhhhhHHHHHHHHhCCCC
Q 009807 202 AEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTG 250 (525)
Q Consensus 202 ~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~~Dvh~vAslLK~fLReLPeP 250 (525)
.+|-|++.|. ..+..+.+.|+-..+++..+..++++++-..|..+|..
T Consensus 7 ~dg~~~v~G~-~~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~ 54 (86)
T 2p4p_A 7 NEDSWLIDGA-TPLEDVMRALNIHTFPRDENYETIGGFMMYMLRXIPXX 54 (86)
T ss_dssp CCSEEEEETT-SBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEcc-CCHHHHHHHhCCCCCCcCCCCccHHHHHHHHhCCCCCC
Confidence 5788999996 45777877776542333346889999999999999864
No 22
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=24.02 E-value=22 Score=27.05 Aligned_cols=32 Identities=38% Similarity=0.712 Sum_probs=23.6
Q ss_pred ccccccCCCcccccccceEeeeccccc--CCCcc
Q 009807 117 LCSMEIGLPTNVRHVAHVTFDRFNGFL--GLPVE 148 (525)
Q Consensus 117 ~~~~~igwp~~i~~~a~it~~r~~~~~--gl~~~ 148 (525)
...++|+-|++.+|++|+-|+.-.|+. |+|.+
T Consensus 4 ~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~ 37 (59)
T 1cee_B 4 ISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPD 37 (59)
T ss_dssp CCTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHH
T ss_pred CCCCcccCCCCCCCcceeccCCCCCcccCCCCHH
Confidence 346789999999999999888655544 44443
No 23
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=23.56 E-value=1.1e+02 Score=24.20 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=35.4
Q ss_pred cCCceecCCCcchHHHHHHHHhcCCCCCCCChhhhhHHHHHHHHhCCCC
Q 009807 202 AEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTG 250 (525)
Q Consensus 202 ~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~~Dvh~vAslLK~fLReLPeP 250 (525)
.+|-|.+.|... ++.+.+.|.-.. +..+..++++++-..|..+|..
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~l--~~~~~~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 7 PSGDFIVKALTP-VDAFNDFFGSEF--SDEEFDTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCCC--CTTTCSBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCCC--CCCCCcCHHHHHHHHhCcCCCC
Confidence 468899999754 777888886542 2346789999999999999864
No 24
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=20.41 E-value=1.3e+02 Score=23.77 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=35.8
Q ss_pred cCCceecCCCcchHHHHHHHHhcCCCCCC--CChhhhhHHHHHHHHhCCCC
Q 009807 202 AEGIFRINAENGQEEYVRDQLNRGMVPDN--IDVHCLAGLIKAWFRELPTG 250 (525)
Q Consensus 202 ~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~--~Dvh~vAslLK~fLReLPeP 250 (525)
.+|-|.+.|. ..+..+.+.|+-..+++. .+..++++++-..|..+|..
T Consensus 7 ~dg~~~v~G~-~~l~dl~~~l~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 56 (86)
T 2pls_A 7 EDGSWLLDGL-IAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQT 56 (86)
T ss_dssp TTSCEEEETT-CBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCCT
T ss_pred CCCeEEEEcc-cCHHHHHHHhCCCcCCCccCCCcccHHHHHHHHhCCCCCC
Confidence 4688999986 457778888876413331 46889999999999999864
No 25
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=20.23 E-value=1.3e+02 Score=24.13 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=35.2
Q ss_pred cCCceecCCCcchHHHHHHHHhcCCCCCC-CChhhhhHHHHHHHHhCCCC
Q 009807 202 AEGIFRINAENGQEEYVRDQLNRGMVPDN-IDVHCLAGLIKAWFRELPTG 250 (525)
Q Consensus 202 ~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~-~Dvh~vAslLK~fLReLPeP 250 (525)
.+|-|.+.|. ..+..+.+.|+-.. ++. .+..++++++-..|..+|..
T Consensus 13 ~dg~~~v~G~-~~l~dl~~~l~~~l-~~~~~~~~TlgG~i~~~lg~iP~~ 60 (90)
T 2p13_A 13 ADGTWLMDGW-ISIRKASNLLEHDL-VDEAERYSTLGGYLLWQFGYIPAA 60 (90)
T ss_dssp TTSCEEEETT-SBHHHHHHHHTSCC-CCTTCCCCBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEECc-CCHHHHHHHHCCCC-CCcCCCCccHHHHHHHHhCCCCCC
Confidence 3688999986 45777888886633 221 46889999999999999863
Done!