Query 009808
Match_columns 525
No_of_seqs 328 out of 1217
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.8E-37 9.6E-42 255.9 6.7 76 407-482 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 5.1E-37 1.8E-41 255.4 4.9 75 407-481 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 1.1E-29 3.8E-34 210.4 4.9 63 247-309 12-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 1.4E-29 4.8E-34 210.8 4.3 62 247-308 15-77 (78)
5 2rpr_A Flywch-type zinc finger 80.4 1.1 3.9E-05 36.6 3.2 54 414-480 18-74 (87)
6 2rpr_A Flywch-type zinc finger 64.7 2.5 8.7E-05 34.5 1.6 48 249-308 24-74 (87)
7 1cz6_A Protein (androctonin); 28.5 14 0.00047 24.6 0.3 8 442-449 16-23 (26)
8 1qxn_A SUD, sulfide dehydrogen 12.4 65 0.0022 27.6 1.0 23 417-439 110-133 (137)
9 1xiw_B T-cell surface glycopro 12.0 76 0.0026 25.7 1.2 27 421-447 17-53 (79)
10 1odh_A MGCM1; transcription fa 11.3 1.5E+02 0.0053 27.8 3.2 39 443-484 122-161 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.8e-37 Score=255.88 Aligned_cols=76 Identities=66% Similarity=1.282 Sum_probs=73.7
Q ss_pred CcEEEeeccccccCcccchhhhcccccccCCCCCcccccccCCCCCccceeeecCCCCCEEEEEEecccCCCCCCC
Q 009808 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHDVPAG 482 (525)
Q Consensus 407 prvvV~t~se~d~~dDGy~WRKYGQK~VkGn~~PRsYYrCt~~gC~vrK~Ver~~~D~~~~~ttY~G~HnHd~P~~ 482 (525)
.||+|+|.+++++++|||+|||||||.|||++|||+|||||.+||+|+|||||+.+|+.+|+|||+|+|||++|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999964
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=5.1e-37 Score=255.36 Aligned_cols=75 Identities=88% Similarity=1.411 Sum_probs=70.0
Q ss_pred CcEEEeeccccccCcccchhhhcccccccCCCCCcccccccCCCCCccceeeecCCCCCEEEEEEecccCCCCCC
Q 009808 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHDVPA 481 (525)
Q Consensus 407 prvvV~t~se~d~~dDGy~WRKYGQK~VkGn~~PRsYYrCt~~gC~vrK~Ver~~~D~~~~~ttY~G~HnHd~P~ 481 (525)
.+|+|+|.+++++++|||+|||||||.|||++|||+|||||++||+|+|||||+.+|+.+|+|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=1.1e-29 Score=210.44 Aligned_cols=63 Identities=56% Similarity=1.088 Sum_probs=59.3
Q ss_pred CCCCCCccccccCccccCCCCCCCCcccccCCCCCCccceeecC-CCCEEEEeeCCCCCCCCCC
Q 009808 247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPPQ 309 (525)
Q Consensus 247 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqrs~-dg~i~~i~Y~G~HnH~~P~ 309 (525)
...+|||+|||||||.|||+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 45789999999999999999999999999999999999999986 6789999999999999985
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.4e-29 Score=210.75 Aligned_cols=62 Identities=56% Similarity=1.061 Sum_probs=58.6
Q ss_pred CCCCCCccccccCccccCCCCCCCCcccccCCCCCCccceeecC-CCCEEEEeeCCCCCCCCC
Q 009808 247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPP 308 (525)
Q Consensus 247 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqrs~-dg~i~~i~Y~G~HnH~~P 308 (525)
...+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+.++.|+|+|+|||+.|
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 45789999999999999999999999999999999999999975 778999999999999988
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=80.44 E-value=1.1 Score=36.63 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=35.0
Q ss_pred ccccccCcccchhhhcccccccCCCCCcccccccC---CCCCccceeeecCCCCCEEEEEEecccCCCCC
Q 009808 414 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---TGCNVRKHVERASTDPKAVITTYEGKHNHDVP 480 (525)
Q Consensus 414 ~se~d~~dDGy~WRKYGQK~VkGn~~PRsYYrCt~---~gC~vrK~Ver~~~D~~~~~ttY~G~HnHd~P 480 (525)
..-.-+.-|||...+--+ ..-+.|.+|+. .+|.||=.... ++ + ...+.|||+..
T Consensus 18 rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 18 LGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp TTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred CCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 344446779998876322 12368999995 58999855543 22 3 35688999643
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=64.72 E-value=2.5 Score=34.53 Aligned_cols=48 Identities=19% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCCCccccccCccccCCCCCCCCcccccC---CCCCCccceeecCCCCEEEEeeCCCCCCCCC
Q 009808 249 ADDPYNWRKYGQKHVKGSEFPRSYYKCTH---PNCPVKKKVERSLDGQVTEIIYKGQHNHPPP 308 (525)
Q Consensus 249 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~---~~C~akK~Vqrs~dg~i~~i~Y~G~HnH~~P 308 (525)
.-|||...+--+ ...+.|.+|+. .+|.|+=.. .. ++ |+..+.|||++.
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T-~~-~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAIT-QG-HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEE-ET-TE----EEECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEE-cC-CC----EECCCCcCCCCc
Confidence 348887765321 12368999996 379996333 22 22 345789999764
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=28.45 E-value=14 Score=24.59 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred ccccccCC
Q 009808 442 SYYKCTTT 449 (525)
Q Consensus 442 sYYrCt~~ 449 (525)
.|||||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999974
No 8
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=12.42 E-value=65 Score=27.58 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=19.2
Q ss_pred cccCcccch-hhhcccccccCCCC
Q 009808 417 VDLLDDGYR-WRKYGQKVVKGNPY 439 (525)
Q Consensus 417 ~d~~dDGy~-WRKYGQK~VkGn~~ 439 (525)
+.+++.||. |++.|-..++++++
T Consensus 110 v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 110 IYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp EEEESSCHHHHHHTTCCEECCCCC
T ss_pred eEEEcCcHHHHHHCCCCccccccc
Confidence 446788987 99999999999875
No 9
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=11.99 E-value=76 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=18.7
Q ss_pred cccchhhhccccc--------cc--CCCCCccccccc
Q 009808 421 DDGYRWRKYGQKV--------VK--GNPYPRSYYKCT 447 (525)
Q Consensus 421 dDGy~WRKYGQK~--------Vk--Gn~~PRsYYrCt 447 (525)
..++.|-|-|... +. ...-||.||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5678899987642 33 234599999994
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=11.32 E-value=1.5e+02 Score=27.85 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=27.0
Q ss_pred cccccC-CCCCccceeeecCCCCCEEEEEEecccCCCCCCCCC
Q 009808 443 YYKCTT-TGCNVRKHVERASTDPKAVITTYEGKHNHDVPAGKN 484 (525)
Q Consensus 443 YYrCt~-~gC~vrK~Ver~~~D~~~~~ttY~G~HnHd~P~~r~ 484 (525)
-+.|.- -|=|| -|..| +|...+...-+|.|+|.-|..+.
T Consensus 122 ~~~Crgh~GyPV-ThFWr--h~~~~ifFqaKG~HDHpRPe~k~ 161 (174)
T 1odh_A 122 LIPCRGHGGFPV-TNFWR--HDGRFIFFQSKGEHDHPRPETKL 161 (174)
T ss_dssp EECCCTBTTBCC-EEEEE--ECSSBEEEEEECCCCSCCCCCHH
T ss_pred eEeccCcCCCcc-eEEEE--EcCCEEEEecccccCCCCCCCcc
Confidence 456663 46677 46677 45555666789999999887653
Done!