BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009809
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 230/499 (46%), Positives = 301/499 (60%), Gaps = 26/499 (5%)
Query: 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 60
+AV + +G+ V VIGDGA+TAG A+EA N+AG + D +VILNDN + S+
Sbjct: 133 IAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDN-EXSISEN--- 188
Query: 61 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGS 120
VGAL++ L++L S + LRE K V + P+ EL + +E+ +G +
Sbjct: 189 -----VGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHIKGXVVPG-- 240
Query: 121 TLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKY 180
TLFEELG YIGPVDGH+V L+ L+ ++ K GP +H+ T+KGRGY AEK +
Sbjct: 241 TLFEELGFNYIGPVDGHDVLGLITTLKNXRDLK--GPQFLHIXTKKGRGYEPAEKDPITF 298
Query: 181 HGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240
H V KFDP++G KSS SY+ F + L A D + AI A G+G F R+
Sbjct: 299 HAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLXAITPAXREGSGXVEFSRK 358
Query: 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM 300
FP R FDV IAEQHAVTFAAGLA G KP AIYS+F+QRAYDQV+HDV +QKLPV FA+
Sbjct: 359 FPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAI 418
Query: 301 DRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 360
DRAG+VGADG TH G+FD++++ C+P V+ PSDE E + T +D PS RYPR
Sbjct: 419 DRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDGPSAVRYPR 478
Query: 361 GNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 420
GN +GVEL P K L +GKG + GE++A+L +GT L A + L T+
Sbjct: 479 GNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGT-----LXPEAAKVAESLNATLV 530
Query: 421 DARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLAQDGLLDGTVKWRPLVL 479
D RF KPLD ALI A SHE L+TVEE +I GG GS V + L V + L
Sbjct: 531 DXRFVKPLDEALILEXAASHEALVTVEENAIXGGAGSGVNEVLXAH---RKPVPVLNIGL 587
Query: 480 PDRYIDHGSPADQLAQAGL 498
PD +I G+ + A+ GL
Sbjct: 588 PDFFIPQGTQEEXRAELGL 606
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 318 bits (816), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 196/499 (39%), Positives = 281/499 (56%), Gaps = 25/499 (5%)
Query: 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 60
MA+ RD +G+ +V AVIGDG++T G A A+N G + M+++LNDN ++S+
Sbjct: 135 MALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDN-EMSISEN--- 190
Query: 61 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGS 120
VGA++ + LQ + +E K + + P+ + ++ R +
Sbjct: 191 -----VGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASV 245
Query: 121 TLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKY 180
F +G+ Y+GPVDGHNV +LV +LE + + GP ++H+VT KG+G YAE +
Sbjct: 246 NPFAAMGVRYVGPVDGHNVQELVWLLERLVDLD--GPTILHIVTTKGKGLSYAEADPIYW 303
Query: 181 HGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240
HG AKFDPATG+ SSA S++ F EA+ A+ D + AM G+GL F R
Sbjct: 304 HGPAKFDPATGEYVPSSA--YSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRV 361
Query: 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM 300
P R DVGIAE+ AVT AAG+A +G++P AIYS+F+QRAYDQV+HDV ++ L V F +
Sbjct: 362 HPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCI 421
Query: 301 DRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 360
DRAG+VGADG TH G FD++F+ +P + + P D AEL M+ A D P RYPR
Sbjct: 422 DRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFAIRYPR 480
Query: 361 GNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 420
GN V P L+ G+ L G+ V +L G A+ L A+ L G V
Sbjct: 481 GNTAQV---PAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVG----VV 533
Query: 421 DARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479
+ARF KPLD ++R + LITVE+ + +GGFG V++ L L TV R L +
Sbjct: 534 NARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMN-LHPTV--RVLGI 590
Query: 480 PDRYIDHGSPADQLAQAGL 498
PD + +H + A+AG+
Sbjct: 591 PDEFQEHATAESVHARAGI 609
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 153/376 (40%), Gaps = 60/376 (15%)
Query: 124 EELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHG- 182
E G + I VDGH+V++L + K+ P I T KGRG E + +HG
Sbjct: 203 EAFGWHAI-IVDGHSVEELCKAFGQAKHQ----PTAIIAKTFKGRGITGVEDK-ESWHGK 256
Query: 183 ------VAKFDPATGKQFKS-------------------SARTQSYTTY----------- 206
+ Q +S + R S +Y
Sbjct: 257 PLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKA 316
Query: 207 FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG 266
+ +AL ++A+ T +F + P R + IAEQ+ V+ A G A
Sbjct: 317 YGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRN 376
Query: 267 LK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMAC 324
PFC+ +++F RA+DQ+ + + + G+ +G DGP+ D+
Sbjct: 377 RTVPFCSTFAAFFTRAFDQI-RMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRS 435
Query: 325 LPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-RYPRGNGIGVELPPGNKGIPLEVGKGR 383
+P V PSD V AA + + CF R R + N +VG+ +
Sbjct: 436 VPTSTVFYPSDGVATEKAVELAA--NTKGICFIRTSRPENAIIY----NNNEDFQVGQAK 489
Query: 384 ILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 441
++++ ++V ++G G + LAA+ LL+ + + V D KPLD LI A++ +
Sbjct: 490 VVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATK 549
Query: 442 -VLITVE----EGSIG 452
++TVE EG IG
Sbjct: 550 GRILTVEDHYYEGGIG 565
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 17/256 (6%)
Query: 207 FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG 266
+ +AL ++A+ T +F + P R + IAEQ+ V+ A G A
Sbjct: 319 YGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRN 378
Query: 267 LK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMAC 324
PFC+ +++F RA+DQ+ + + + G+ +G DGP+ D+
Sbjct: 379 RTVPFCSTFAAFFTRAFDQI-RMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRS 437
Query: 325 LPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-RYPRGNGIGVELPPGNKGIPLEVGKGR 383
+P V PSD V AA + + CF R R + N +VG+ +
Sbjct: 438 VPTSTVFYPSDGVATEKAVELAA--NTKGICFIRTSRPENAIIY----NNNEDFQVGQAK 491
Query: 384 ILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 441
++++ ++V ++G G + LAA+ LL+ + + V D KPLD LI A++ +
Sbjct: 492 VVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATK 551
Query: 442 -VLITVE----EGSIG 452
++TVE EG IG
Sbjct: 552 GRILTVEDHYYEGGIG 567
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 128/281 (45%), Gaps = 37/281 (13%)
Query: 210 ALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLAC 264
AL E E D+ VV + +G G+ L+ R P R D + E + FA G+A
Sbjct: 60 ALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAM 119
Query: 265 EGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLV--------GADGPTHC 314
GLKP I + F+ D++++ + KL R + +A LV G H
Sbjct: 120 AGLKPVAEIQFVDFIWLGADELLNHI--AKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS 177
Query: 315 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-------RYPRGNGIGVE 367
S + F+ P +VV+ PS ++ A DD P F R PR E
Sbjct: 178 NSPEAIFVHT-PGLVVVMPSTPYNAKGLLKAAIRGDD-PVVFLEPKILYRAPRE-----E 230
Query: 368 LPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 427
+P G+ + E+GK R+ EG+ V L+ YG V L A+ ++++ + V D + P
Sbjct: 231 VPEGDYVV--EIGKARVAREGDDVTLVTYGAVVHKALEAAERVKAS---VEVVDLQTLNP 285
Query: 428 LD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGL 467
LD +++S++K+ ++I + GG G+ V +A+ L
Sbjct: 286 LDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKAL 326
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 294
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 63 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122
Query: 295 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 354
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 123 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 180
Query: 355 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 412
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 181 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 240
Query: 413 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 449
G+ V + R +P+D I + L+TVE G
Sbjct: 241 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 277
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 294
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 51 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 110
Query: 295 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 354
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 111 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 168
Query: 355 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 412
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 169 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 228
Query: 413 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 449
G+ V + R +P+D I + L+TVE G
Sbjct: 229 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 265
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 51/291 (17%)
Query: 210 ALIAEAEVDKDVVAIHAAMGGGTGLNL----FLRRF-PTRCFDVGIAEQHAVTFAAGLAC 264
AL E D VV + +G G+ L L+++ P R D ++E V A G+A
Sbjct: 13 ALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAA 72
Query: 265 EGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 323
GL+P I ++ ++ +DQ+V V KL R+ R+G G F +
Sbjct: 73 HGLRPVAEIQFADYIFPGFDQLVSQV--AKL--RY---RSG----------GQFTAPLVV 115
Query: 324 CLPNMVVM------APSDEAELFHM-------VAT---------AAAIDDRPSCFRYPRG 361
+P+ + + S EA H V+T AA D+ P F P+
Sbjct: 116 RMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKR 175
Query: 362 --NGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTV 419
+ E+P + +P +GK + EG+ + L+ YGT + L A+A L G+ V
Sbjct: 176 LYRSVKEEVPEEDYTLP--IGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEV 233
Query: 420 ADARFCKPLDH-ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 469
D R P D+ A++ S+AK+ V++ + F S V +A+D LLD
Sbjct: 234 LDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAED-LLD 283
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 13/217 (5%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 294
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 63 RIIDTPISEXGFAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPV 122
Query: 295 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 354
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 123 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 180
Query: 355 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 412
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 181 VLENELXYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 240
Query: 413 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 449
G+ V + R +P D I + L+TVE G
Sbjct: 241 EGVECEVINXRTIRPXDXETIEASVXKTNHLVTVEGG 277
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 19/238 (7%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQK--------L 294
R FD +AE A GLA +G +P I + F+ D + + + +
Sbjct: 51 RVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHM 110
Query: 295 PVRFAMDRAGLVGADGPT-HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 353
P+ G G P H S + +A P + V+ PS + ++ +A D+ P
Sbjct: 111 PITIRSPFGG--GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIR-DNDP 166
Query: 354 SCF--RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE 411
F E+P G IP +GK I EG+ + ++ YG V L A+A LE
Sbjct: 167 VIFLEHLKLYRSFRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELE 224
Query: 412 SNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 468
G+ V D R +PLD +I S+ K+ ++ E G ++VV + + +L
Sbjct: 225 KEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAIL 282
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 19/238 (7%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQK--------L 294
R FD +AE A GLA +G +P I + F+ D + + + +
Sbjct: 52 RVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHM 111
Query: 295 PVRFAMDRAGLVGADGPT-HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 353
P+ G G P H S + +A P + V+ PS + ++ +A D+ P
Sbjct: 112 PITIRSPFGG--GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIR-DNDP 167
Query: 354 SCF--RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE 411
F E+P G IP +GK I EG+ + ++ YG V L A+A LE
Sbjct: 168 VIFLEHLKLYRSFRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELE 225
Query: 412 SNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 468
G+ V D R +PLD +I S+ K+ ++ E G ++VV + + +L
Sbjct: 226 KEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAIL 283
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 36/250 (14%)
Query: 243 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKL------- 294
+R FD I+E V A G+ GL+P I ++ + A DQ+V ++ +
Sbjct: 53 SRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFI 112
Query: 295 -PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 353
P+ M G + G TH S + F VM PS+ + ++ + DD P
Sbjct: 113 APLTLRMPCGGGIYG-GQTHSQSPEAMFTQVCGLRTVM-PSNPYDAKGLLIASIECDD-P 169
Query: 354 SCFRYPRGNGIG------------------VELPPGNKGIPLEVGKGRILIEGERVALLG 395
F P+ G +P G +PL+ K I G V++L
Sbjct: 170 VIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLD--KAAITRPGNDVSVLT 227
Query: 396 YGTAVQSCLAASALLESNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGF 454
YGT V A E +G+ V D R PLD ++ S+ K+ ++ E GF
Sbjct: 228 YGTTV---YVAQVAAEESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGF 284
Query: 455 GSHVVQFLAQ 464
G+ +V + +
Sbjct: 285 GAELVSLVQE 294
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 42/253 (16%)
Query: 243 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMD 301
+R FD I+E V A G GL+P I ++ + A DQ+V + +L R A +
Sbjct: 52 SRVFDAPISESGIVGTAVGXGAYGLRPVVEIQFADYFYPASDQIVS--EXARLRYRSAGE 109
Query: 302 R-----------AGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 350
G+ G G TH S + F + + PS+ + ++ + D
Sbjct: 110 FIAPLTLRXPCGGGIYG--GQTHSQSPEAXFTQVC-GLRTVXPSNPYDAKGLLIASIECD 166
Query: 351 DRPSCFRYPRG--NG----------------IGVELPPGNKGIPLEVGKGRILIEGERVA 392
D P F P+ NG +P G +PL+ K I G V+
Sbjct: 167 D-PVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLD--KAAITRPGNDVS 223
Query: 393 LLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSI 451
+L YGT V A E +G+ V D R PLD ++ S+ K+ ++ E
Sbjct: 224 VLTYGTTV---YVAQVAAEESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRT 280
Query: 452 GGFGSHVVQFLAQ 464
GFG+ +V + +
Sbjct: 281 CGFGAELVSLVQE 293
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 266 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLP--VRFAMDRAGLVGADGPTHCGSFDVTFMA 323
G KPF + +F + + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 324 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 362
+PN+ V P+D E + T A PSC + R N
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN 567
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 266 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLP--VRFAMDRAGLVGADGPTHCGSFDVTFMA 323
G KPF + +F + + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 324 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 362
+PN+ V P+D E + T A PSC + R N
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN 567
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 306 VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG 365
+G DGPTH + + PN+ V+ P+D E F+ A + P+ R +
Sbjct: 461 LGEDGPTHQPVEHLXSLRAXPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTR-QAVP 519
Query: 366 VELPPGNKGIPLEVGKGRIL--IEGERVALLGYGTAVQSCLAASALLESNGLRLTV 419
+ P +G+ + G +L +E + L+ G+ V L A ALL G+R+ V
Sbjct: 520 LLSPEKARGL---LRGGYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRV 572
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Query: 266 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRF--AMDRAGLVGADGPTHCGSFDVTFMA 323
G+KP+ + F + + + L K PV + D GL G DGPTH V +
Sbjct: 427 GIKPYGGTFLVFSDYSRNAIRXSA-LXKQPVVHVXSHDSIGL-GEDGPTHQPIEHVPSLR 484
Query: 324 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPP--GNKGIPLEVGK 381
+PN+ V P+D E A D PS R N L P + + +
Sbjct: 485 LIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQN-----LXPVVQTQHQVANIAR 539
Query: 382 GRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVA 420
G L++ ++ ++ G+ V+ + + E G++L VA
Sbjct: 540 GGYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 6 DLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 54
DLK ++ +GDG + G ++EA + AG L + +V D+ +S+
Sbjct: 143 DLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNISI 191
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 298 FAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID-DRPSCF 356
F D G VG DGPTH ++ PN + P+D E ++ A A++ D PS F
Sbjct: 442 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVE--NVKAWQIALNADIPSAF 498
Query: 357 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVA---LLGYGTAVQSCLAASALLESN 413
R +L N+ + +V G L++ + A LL G+ V CL ++ LE
Sbjct: 499 VLSRQ-----KLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQ 553
Query: 414 GLRLTV 419
G V
Sbjct: 554 GFACNV 559
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 3 VGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 54
+G DL K + + GDG + G +YEA + AG D +++ D+ +S+
Sbjct: 140 LGSDLIDHK--IYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISI 189
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 298 FAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID-DRPSCF 356
F D G VG DGPTH ++ PN + P+D E ++ A A++ D PS F
Sbjct: 439 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVE--NVKAWQIALNADIPSAF 495
Query: 357 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVA---LLGYGTAVQSCLAASALLESN 413
R +L N+ + +V G L++ + A LL G+ V CL ++ LE
Sbjct: 496 VLSRQ-----KLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQ 550
Query: 414 GLRLTV 419
G V
Sbjct: 551 GFACNV 556
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 3 VGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 54
+G DL K + + GDG + G +YEA + AG D +++ D+ +S+
Sbjct: 137 LGSDLIDHK--IYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISI 186
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 60
+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 154 VALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR---------- 203
Query: 61 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMISG 117
A+S+ + + + L + + VA G+ Q+ G M LA A V I+G
Sbjct: 204 ------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAING 255
Query: 118 SGSTLFEELGLYYIGP 133
G TL E L Y GP
Sbjct: 256 EGPTLIETLCFRY-GP 270
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 60
+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 155 VALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR---------- 204
Query: 61 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMISG 117
A+S+ + + + L + + VA G+ Q+ G M LA A V I+G
Sbjct: 205 ------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAING 256
Query: 118 SGSTLFEELGLYYIGP 133
G TL E L Y GP
Sbjct: 257 EGPTLIETLCFRY-GP 271
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 244 RCFDVGIAEQHAVTFAAGL-ACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDR 302
R G+ E GL A +G+ PF + +F+ A V + A
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHD 462
Query: 303 AGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 362
+ VG DGPTH V + +PN+ V+ PSD+ E A A + P+ R N
Sbjct: 463 SIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQN 522
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 19 GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTAT 58
GDG + G EA++ AG+L + ++++ D+ +S+ +T
Sbjct: 156 GDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGST 195
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50
+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 155 VALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 60
+A+G ++G+K + GDG + G Y+ +N AG + I ++ +N+
Sbjct: 154 VALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNR---------- 203
Query: 61 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMISG 117
A+S+ + + + L + + VA G+ Q+ G M LA A V I+G
Sbjct: 204 ------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAING 255
Query: 118 SGSTLFEELGLYYIGP 133
G TL E L Y GP
Sbjct: 256 EGPTLIETLCFRY-GP 270
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 266 GLKPFCA---IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTF 321
GLK + ++S +++ A + L +LPV + + VG DGPTH +
Sbjct: 451 GLKTYGGTFFVFSDYLRPA----IRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAA 506
Query: 322 MACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE-VG 380
+ PN+ V+ P+D E A ++P+ R + +E G K E V
Sbjct: 507 LRAXPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLE---GAKDDTYEKVA 563
Query: 381 KGRILIEGER-----VALLGYGTAVQSCLAASALLESNGLRLTV 419
KG ++ + V LL G+ V + A L +G+ +V
Sbjct: 564 KGAYVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASV 607
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 249 GIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVR-FAMDRAGLV 306
G+ E A G++ G P+ + + F++ A + V +++ V + D GL
Sbjct: 407 GVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL- 465
Query: 307 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 338
G DGPTH V + PNM P D+ E
Sbjct: 466 GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 497
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 107 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK 166
+D + G + + FE G + I +DGH+ + +EE + T P L+ T
Sbjct: 188 IDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTII 246
Query: 167 GRGYP 171
G G P
Sbjct: 247 GFGSP 251
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 249 GIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVR-FAMDRAGLV 306
G+ E A G++ G P+ + + F++ A + V +++ V + D GL
Sbjct: 408 GVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL- 466
Query: 307 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 338
G DGPTH V + PNM P D+ E
Sbjct: 467 GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 498
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 107 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK 166
+D + G + + FE G + I +DGH+ + +EE + T P L+ T
Sbjct: 189 IDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTII 247
Query: 167 GRGYP 171
G G P
Sbjct: 248 GFGSP 252
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 240 RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA---IYSSFMQRAYDQVVHDVDLQKLPV 296
RF R +G A+ L G P+CA +++ +M+ A + L + V
Sbjct: 418 RFGVREHGMG-----AICNGIALHSPGFVPYCATFFVFTDYMRGA----MRISALSEAGV 468
Query: 297 RFAM--DRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 354
+ M D GL G DGPTH + +PN++++ P+D E A RPS
Sbjct: 469 IYVMTHDSIGL-GEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPS 527
Query: 355 CFRYPR 360
R
Sbjct: 528 ILALSR 533
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 120 STLFEELGLYYIGPVDGHN-VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAAD 178
ST FE LG + I +G+ DD+ A ++E K T P LI V T G G P A+
Sbjct: 215 STRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSP---NKAN 270
Query: 179 KY--HGVA 184
Y HG A
Sbjct: 271 SYSVHGSA 278
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ-----RAYDQVVHDVDLQKLPVRF 298
R G+ E +G+ G P A +F+Q R ++ +D+ + V +
Sbjct: 433 RTLHFGVREHAMGAILSGIVLHG--PTRAYGGTFLQFSDYMRPAVRLAALMDIDTIYV-W 489
Query: 299 AMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358
D GL G DGPTH ++ + +P + V+ P+D E + T A
Sbjct: 490 THDSIGL-GEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILA---------- 538
Query: 359 PRGNGIG-VELPPGNKGIPLEVGK--------GRILIE------GER--VALLGYGTAVQ 401
R NG G V L +G+P+ G G +L + GE V L+ G+ VQ
Sbjct: 539 -RRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQ 597
Query: 402 SCLAASALLESNGL 415
+AA LL N +
Sbjct: 598 LAVAAQTLLADNDI 611
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 301
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 408 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 466
Query: 302 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 360
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 467 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 526
Query: 361 GN 362
N
Sbjct: 527 QN 528
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 301
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 410 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 468
Query: 302 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 360
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 469 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 528
Query: 361 GN 362
N
Sbjct: 529 QN 530
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 244 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 301
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 410 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 468
Query: 302 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 360
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 469 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 528
Query: 361 GN 362
N
Sbjct: 529 QN 530
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 414 GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVK 473
G+++T + F KPL ++ SLA + +L G + G G+ + +L + L G+V
Sbjct: 252 GIKVTEGNKTFWKPLTTKIV-SLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVV 310
Query: 474 WRPLVLP 480
P LP
Sbjct: 311 GLPGTLP 317
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50
+A+ G+ + + GDGA GQ +EA N A I I +N+
Sbjct: 152 IALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENNR 201
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 77 QSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG--------L 128
+S RPL+ +R KG ++ G + + +VD AR +I+G + +ELG L
Sbjct: 323 KSGRPLKSIRARLKGKEGRLRGNL--MGKRVDFSARTVITGDPNLSLDELGVPRSIAKTL 380
Query: 129 YYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 184
Y V +N+ L E V+N P +++ + G E+ +YH A
Sbjct: 381 TYPETVTPYNIYQL---QELVRNGPDEHPGAKYIIRDTG------ERIDLRYHKRA 427
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 101 HELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE----VKNTKTT 155
+E+ A++D R + I G + L + Y+G D H V + A +E +KN TT
Sbjct: 164 YEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPD-HGVPESAASFDELLSVIKNCVTT 222
Query: 156 GPVLIHVVTEKGR 168
P+L+H GR
Sbjct: 223 SPILVHCSAGIGR 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,767,039
Number of Sequences: 62578
Number of extensions: 687168
Number of successful extensions: 1727
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 77
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)