Query 009809
Match_columns 525
No_of_seqs 198 out of 2108
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 17:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02582 1-deoxy-D-xylulose-5- 100.0 1.4E-99 3E-104 823.9 57.2 522 1-522 156-677 (677)
2 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1E-96 2E-101 762.1 51.2 495 1-513 127-624 (627)
3 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.6E-94 3.5E-99 777.1 54.2 501 1-522 201-701 (701)
4 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 4.1E-91 8.9E-96 761.2 54.6 493 1-511 123-616 (617)
5 PRK12571 1-deoxy-D-xylulose-5- 100.0 9.5E-90 2.1E-94 752.5 54.0 502 1-517 131-633 (641)
6 PLN02234 1-deoxy-D-xylulose-5- 100.0 7.2E-88 1.6E-92 725.9 47.6 444 1-476 189-632 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 3.6E-85 7.9E-90 710.7 49.3 454 1-511 125-580 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 1.7E-80 3.7E-85 677.4 47.4 449 1-511 129-580 (580)
9 PRK12753 transketolase; Review 100.0 2.2E-73 4.8E-78 624.8 41.3 438 1-511 126-663 (663)
10 PLN02790 transketolase 100.0 1.1E-71 2.3E-76 612.2 43.9 437 1-511 117-654 (654)
11 KOG0523 Transketolase [Carbohy 100.0 6.5E-72 1.4E-76 574.0 36.1 450 1-518 130-632 (632)
12 TIGR00232 tktlase_bact transke 100.0 1.3E-71 2.7E-76 611.5 40.6 436 1-511 122-653 (653)
13 PTZ00089 transketolase; Provis 100.0 1.3E-71 2.9E-76 612.1 40.1 434 1-513 128-660 (661)
14 PRK12754 transketolase; Review 100.0 5.5E-71 1.2E-75 601.8 40.5 439 1-511 126-663 (663)
15 PRK05899 transketolase; Review 100.0 5.4E-70 1.2E-74 600.1 39.1 435 2-511 131-624 (624)
16 COG3958 Transketolase, C-termi 100.0 1.8E-69 3.8E-74 514.7 33.9 304 200-511 6-312 (312)
17 PRK09405 aceE pyruvate dehydro 100.0 8.9E-67 1.9E-71 573.2 46.3 492 7-515 220-865 (891)
18 TIGR03186 AKGDH_not_PDH alpha- 100.0 3.2E-67 7E-72 576.5 42.2 489 9-515 216-862 (889)
19 PRK13012 2-oxoacid dehydrogena 100.0 3.9E-64 8.4E-69 554.8 43.8 489 7-515 228-870 (896)
20 COG0021 TktA Transketolase [Ca 100.0 1.8E-61 3.9E-66 502.9 38.4 427 11-511 148-662 (663)
21 CHL00144 odpB pyruvate dehydro 100.0 2E-57 4.3E-62 460.4 36.2 306 200-514 3-326 (327)
22 PRK09212 pyruvate dehydrogenas 100.0 1.8E-56 3.9E-61 454.2 36.7 306 200-513 3-325 (327)
23 PLN02683 pyruvate dehydrogenas 100.0 1.7E-56 3.7E-61 457.6 36.6 309 199-513 25-352 (356)
24 PRK11892 pyruvate dehydrogenas 100.0 4.3E-56 9.2E-61 466.7 37.3 307 199-512 140-463 (464)
25 PTZ00182 3-methyl-2-oxobutanat 100.0 1.1E-54 2.4E-59 444.1 34.6 308 198-511 32-355 (355)
26 COG0022 AcoB Pyruvate/2-oxoglu 100.0 5.1E-54 1.1E-58 411.9 29.1 304 201-512 2-323 (324)
27 TIGR00759 aceE pyruvate dehydr 100.0 4.4E-45 9.6E-50 396.7 38.4 488 8-515 215-859 (885)
28 KOG0524 Pyruvate dehydrogenase 100.0 9.2E-46 2E-50 345.6 24.3 307 199-511 33-358 (359)
29 PRK09404 sucA 2-oxoglutarate d 100.0 7.4E-40 1.6E-44 364.6 34.1 401 2-464 327-884 (924)
30 COG2609 AceE Pyruvate dehydrog 100.0 1.6E-38 3.5E-43 330.0 33.5 485 9-514 219-860 (887)
31 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.1E-38 2.3E-43 353.5 31.8 391 11-463 343-889 (929)
32 PRK05261 putative phosphoketol 100.0 6.9E-37 1.5E-41 333.5 40.7 440 2-510 151-740 (785)
33 KOG0525 Branched chain alpha-k 100.0 2E-38 4.3E-43 292.1 16.9 304 198-511 38-360 (362)
34 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1.7E-34 3.8E-39 263.5 18.9 154 206-360 2-156 (156)
35 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 5.6E-32 1.2E-36 248.2 16.7 153 205-360 1-167 (167)
36 PF02779 Transket_pyr: Transke 100.0 1.1E-31 2.4E-36 250.6 10.0 163 200-363 2-175 (178)
37 smart00861 Transket_pyr Transk 100.0 4.3E-28 9.3E-33 224.5 17.5 158 202-361 1-167 (168)
38 PF13292 DXP_synthase_N: 1-deo 99.9 3.2E-27 7E-32 225.2 4.8 148 1-164 123-270 (270)
39 PRK07119 2-ketoisovalerate fer 99.9 5.9E-23 1.3E-27 210.6 25.3 254 236-512 42-350 (352)
40 PRK08659 2-oxoglutarate ferred 99.9 8.5E-22 1.9E-26 203.6 25.0 248 241-510 47-375 (376)
41 PRK09627 oorA 2-oxoglutarate-a 99.9 8.2E-22 1.8E-26 203.1 23.9 246 240-510 45-375 (375)
42 TIGR03336 IOR_alpha indolepyru 99.9 7.4E-22 1.6E-26 216.9 24.4 246 243-510 46-335 (595)
43 PRK08366 vorA 2-ketoisovalerat 99.9 1.6E-20 3.4E-25 194.3 29.1 204 249-455 55-327 (390)
44 PRK09622 porA pyruvate flavodo 99.9 2.9E-20 6.3E-25 194.4 29.3 254 244-512 58-382 (407)
45 PRK08367 porA pyruvate ferredo 99.9 3.3E-20 7.1E-25 192.4 28.5 246 249-512 56-374 (394)
46 PF02780 Transketolase_C: Tran 99.9 3.4E-23 7.4E-28 181.9 3.3 123 380-503 1-124 (124)
47 TIGR03710 OAFO_sf 2-oxoacid:ac 99.9 3.3E-20 7.2E-25 201.7 24.0 219 243-462 237-537 (562)
48 COG3957 Phosphoketolase [Carbo 99.8 4.5E-19 9.8E-24 186.6 26.8 390 2-445 162-693 (793)
49 COG3959 Transketolase, N-termi 99.8 1.7E-20 3.7E-25 173.1 9.1 112 1-167 131-243 (243)
50 cd02017 TPP_E1_EcPDC_like Thia 99.8 1.7E-20 3.8E-25 190.1 10.0 128 1-182 130-334 (386)
51 cd02007 TPP_DXS Thiamine pyrop 99.8 2.7E-20 5.9E-25 175.8 8.7 109 1-170 87-195 (195)
52 PF00456 Transketolase_N: Tran 99.8 7.3E-21 1.6E-25 192.6 4.0 120 9-184 141-261 (332)
53 cd02012 TPP_TK Thiamine pyroph 99.8 8.8E-19 1.9E-23 173.0 9.9 127 2-184 118-245 (255)
54 COG1071 AcoA Pyruvate/2-oxoglu 99.7 1E-17 2.2E-22 168.4 8.8 126 1-181 148-276 (358)
55 COG4231 Indolepyruvate ferredo 99.7 5.6E-15 1.2E-19 155.6 25.5 249 243-514 58-356 (640)
56 PF00676 E1_dh: Dehydrogenase 99.7 2.8E-17 6.1E-22 165.4 6.7 118 2-174 114-234 (300)
57 COG0674 PorA Pyruvate:ferredox 99.7 1.4E-14 3.1E-19 149.2 23.8 219 237-458 42-328 (365)
58 TIGR02176 pyruv_ox_red pyruvat 99.6 4.5E-14 9.8E-19 164.2 27.3 251 244-511 53-379 (1165)
59 PLN02269 Pyruvate dehydrogenas 99.6 4.6E-16 9.9E-21 159.5 8.3 117 1-174 150-268 (362)
60 PLN02374 pyruvate dehydrogenas 99.6 5.9E-16 1.3E-20 161.8 8.0 115 2-173 207-333 (433)
61 CHL00149 odpA pyruvate dehydro 99.6 1.2E-15 2.5E-20 156.0 8.0 107 10-173 156-267 (341)
62 cd02016 TPP_E1_OGDC_like Thiam 99.6 2.2E-15 4.8E-20 146.9 7.1 117 2-173 126-254 (265)
63 KOG0225 Pyruvate dehydrogenase 99.6 3.5E-15 7.5E-20 144.9 8.1 118 1-174 177-296 (394)
64 TIGR03181 PDH_E1_alph_x pyruva 99.6 5E-15 1.1E-19 151.8 9.5 116 2-174 135-255 (341)
65 PRK12270 kgd alpha-ketoglutara 99.6 2.7E-12 5.8E-17 140.5 30.1 412 12-489 648-1211(1228)
66 TIGR03182 PDH_E1_alph_y pyruva 99.6 5E-15 1.1E-19 150.3 8.6 118 2-173 123-242 (315)
67 cd02000 TPP_E1_PDC_ADC_BCADC T 99.6 4.4E-15 9.6E-20 149.5 8.1 117 2-172 117-235 (293)
68 PRK13030 2-oxoacid ferredoxin 99.5 6.9E-12 1.5E-16 143.9 25.1 296 200-513 19-396 (1159)
69 KOG1182 Branched chain alpha-k 99.4 1.2E-13 2.6E-18 132.9 5.7 126 2-183 206-335 (432)
70 PRK09193 indolepyruvate ferred 99.4 2.4E-11 5.1E-16 139.2 24.7 294 200-513 27-404 (1165)
71 cd02011 TPP_PK Thiamine pyroph 99.4 1.8E-12 3.8E-17 123.5 9.6 117 2-171 71-209 (227)
72 PRK13029 2-oxoacid ferredoxin 99.4 2.9E-11 6.3E-16 138.1 20.7 295 200-511 30-416 (1186)
73 cd06586 TPP_enzyme_PYR Pyrimid 99.3 1.6E-11 3.4E-16 111.6 13.5 149 210-360 2-154 (154)
74 cd02004 TPP_BZL_OCoD_HPCL Thia 99.3 5.9E-12 1.3E-16 116.9 5.9 115 1-164 56-171 (172)
75 cd02008 TPP_IOR_alpha Thiamine 99.2 4.8E-12 1.1E-16 118.2 4.6 118 2-165 60-177 (178)
76 cd00568 TPP_enzymes Thiamine p 99.2 9.4E-12 2E-16 114.8 6.0 114 2-164 55-168 (168)
77 cd02015 TPP_AHAS Thiamine pyro 99.2 4.3E-11 9.2E-16 112.6 6.4 115 2-166 59-175 (186)
78 cd02003 TPP_IolD Thiamine pyro 99.2 4.7E-11 1E-15 114.1 6.7 128 2-168 57-187 (205)
79 cd02013 TPP_Xsc_like Thiamine 99.1 6.5E-11 1.4E-15 112.3 6.3 120 2-169 62-183 (196)
80 cd02014 TPP_POX Thiamine pyrop 99.1 6.8E-11 1.5E-15 110.4 6.2 114 2-165 60-173 (178)
81 cd02010 TPP_ALS Thiamine pyrop 99.1 9.1E-11 2E-15 109.4 6.5 114 2-165 57-170 (177)
82 cd02002 TPP_BFDC Thiamine pyro 99.1 1.4E-10 2.9E-15 108.4 7.4 119 2-164 58-178 (178)
83 cd02009 TPP_SHCHC_synthase Thi 99.1 1.2E-10 2.6E-15 108.4 5.0 115 2-164 60-174 (175)
84 KOG0451 Predicted 2-oxoglutara 99.1 1.2E-08 2.6E-13 105.4 19.0 249 201-455 564-867 (913)
85 PF02775 TPP_enzyme_C: Thiamin 99.0 7.2E-11 1.6E-15 107.5 2.7 114 2-162 37-153 (153)
86 cd02006 TPP_Gcl Thiamine pyrop 99.0 6.9E-10 1.5E-14 105.8 9.4 128 2-166 66-195 (202)
87 PRK06163 hypothetical protein; 99.0 5E-10 1.1E-14 106.3 7.0 108 2-167 66-175 (202)
88 PF01855 POR_N: Pyruvate flavo 99.0 4.7E-10 1E-14 108.5 6.7 115 245-361 38-155 (230)
89 cd03371 TPP_PpyrDC Thiamine py 99.0 1.4E-09 2.9E-14 102.4 8.5 110 2-169 57-167 (188)
90 COG0028 IlvB Thiamine pyrophos 99.0 7.7E-10 1.7E-14 120.3 6.7 116 2-167 417-533 (550)
91 cd02001 TPP_ComE_PpyrDC Thiami 98.9 1.6E-09 3.4E-14 99.0 7.1 105 2-166 51-156 (157)
92 cd03376 TPP_PFOR_porB_like Thi 98.9 5.5E-09 1.2E-13 101.7 10.0 129 2-165 71-200 (235)
93 PRK09124 pyruvate dehydrogenas 98.9 1.6E-09 3.5E-14 119.5 6.7 114 2-165 417-530 (574)
94 PRK07524 hypothetical protein; 98.9 1.7E-09 3.6E-14 118.4 6.8 118 2-169 416-533 (535)
95 TIGR03846 sulfopy_beta sulfopy 98.9 2.6E-09 5.6E-14 99.9 7.0 105 2-165 51-156 (181)
96 cd03372 TPP_ComE Thiamine pyro 98.9 3.5E-09 7.6E-14 98.9 7.8 108 2-169 51-159 (179)
97 PRK06546 pyruvate dehydrogenas 98.9 1.6E-09 3.6E-14 119.4 6.2 115 2-166 417-531 (578)
98 PRK06457 pyruvate dehydrogenas 98.9 2E-09 4.4E-14 118.0 6.9 114 2-165 405-519 (549)
99 PRK08611 pyruvate oxidase; Pro 98.9 2.3E-09 5E-14 118.2 7.2 115 2-166 417-531 (576)
100 TIGR02418 acolac_catab acetola 98.9 3.3E-09 7.2E-14 116.2 7.4 114 2-165 417-530 (539)
101 cd02005 TPP_PDC_IPDC Thiamine 98.9 1.3E-09 2.8E-14 102.2 3.5 112 2-165 59-174 (183)
102 PRK08266 hypothetical protein; 98.9 3.7E-09 8.1E-14 115.9 7.4 119 2-169 411-529 (542)
103 cd03375 TPP_OGFOR Thiamine pyr 98.9 5.7E-09 1.2E-13 98.7 7.6 124 2-165 60-184 (193)
104 PRK06112 acetolactate synthase 98.9 2E-09 4.3E-14 118.9 5.1 116 2-166 446-561 (578)
105 PRK07064 hypothetical protein; 98.9 3.2E-09 6.9E-14 116.5 6.7 116 1-165 413-528 (544)
106 PRK08617 acetolactate synthase 98.8 4.4E-09 9.5E-14 115.6 7.3 115 2-166 423-537 (552)
107 PRK08199 thiamine pyrophosphat 98.8 3.5E-09 7.7E-14 116.4 6.6 114 2-165 424-538 (557)
108 PRK08322 acetolactate synthase 98.8 6.2E-09 1.3E-13 114.3 7.6 118 2-169 415-532 (547)
109 PRK05858 hypothetical protein; 98.8 6E-09 1.3E-13 114.2 7.4 116 1-166 415-531 (542)
110 TIGR02720 pyruv_oxi_spxB pyruv 98.8 5.3E-09 1.1E-13 115.4 6.8 114 2-165 417-532 (575)
111 PRK06965 acetolactate synthase 98.8 5.1E-09 1.1E-13 115.8 6.7 116 2-166 446-563 (587)
112 PRK06154 hypothetical protein; 98.8 5.4E-09 1.2E-13 114.9 6.2 115 2-165 440-555 (565)
113 PRK09107 acetolactate synthase 98.8 6.4E-09 1.4E-13 115.1 6.8 115 1-165 438-554 (595)
114 PRK07418 acetolactate synthase 98.8 6E-09 1.3E-13 115.8 6.6 115 2-166 443-560 (616)
115 PRK06725 acetolactate synthase 98.8 6.5E-09 1.4E-13 114.4 6.7 115 1-165 430-545 (570)
116 TIGR01504 glyox_carbo_lig glyo 98.8 1.1E-08 2.3E-13 113.1 8.4 128 1-165 426-555 (588)
117 PRK12474 hypothetical protein; 98.8 9.5E-09 2.1E-13 112.0 7.6 119 2-164 398-518 (518)
118 PF03894 XFP: D-xylulose 5-pho 98.8 2.3E-07 4.9E-12 83.9 14.9 144 205-348 2-178 (179)
119 PRK08979 acetolactate synthase 98.8 1E-08 2.2E-13 113.1 7.7 116 1-165 429-546 (572)
120 CHL00099 ilvB acetohydroxyacid 98.8 8.9E-09 1.9E-13 113.8 6.8 114 2-165 439-555 (585)
121 TIGR00118 acolac_lg acetolacta 98.7 1.3E-08 2.8E-13 112.0 7.3 115 2-166 421-537 (558)
122 PRK08527 acetolactate synthase 98.7 1.4E-08 3E-13 111.9 7.5 115 2-166 423-539 (563)
123 PRK06048 acetolactate synthase 98.7 1.1E-08 2.3E-13 112.7 6.6 115 2-166 423-539 (561)
124 PRK08978 acetolactate synthase 98.7 1.1E-08 2.4E-13 112.3 6.6 116 2-166 410-526 (548)
125 PRK06466 acetolactate synthase 98.7 1.2E-08 2.6E-13 112.6 6.8 116 2-166 432-549 (574)
126 TIGR03297 Ppyr-DeCO2ase phosph 98.7 2.6E-08 5.6E-13 102.8 8.7 109 2-169 230-340 (361)
127 PRK07710 acetolactate synthase 98.7 1.2E-08 2.6E-13 112.5 6.8 114 2-165 433-548 (571)
128 PRK07586 hypothetical protein; 98.7 1.4E-08 3.1E-13 110.6 7.0 118 2-163 394-513 (514)
129 PRK07092 benzoylformate decarb 98.7 6.1E-09 1.3E-13 113.9 4.0 114 2-164 416-529 (530)
130 PRK08273 thiamine pyrophosphat 98.7 1.6E-08 3.5E-13 112.0 7.4 115 2-165 424-546 (597)
131 PRK07979 acetolactate synthase 98.7 1.5E-08 3.2E-13 111.9 6.9 116 2-165 430-548 (574)
132 PRK08327 acetolactate synthase 98.7 2.2E-08 4.8E-13 110.3 8.3 125 1-164 438-566 (569)
133 PLN02470 acetolactate synthase 98.7 1.5E-08 3.2E-13 112.0 6.8 119 2-166 435-558 (585)
134 PRK06882 acetolactate synthase 98.7 1.6E-08 3.4E-13 111.8 6.8 116 2-166 430-547 (574)
135 PRK07789 acetolactate synthase 98.7 2E-08 4.4E-13 111.6 7.7 116 1-165 455-576 (612)
136 PRK11864 2-ketoisovalerate fer 98.7 1.9E-08 4.1E-13 100.3 6.6 125 3-166 83-208 (300)
137 TIGR03457 sulphoacet_xsc sulfo 98.7 2.3E-08 4.9E-13 110.5 7.8 120 1-168 438-560 (579)
138 PRK06456 acetolactate synthase 98.7 1.8E-08 4E-13 111.1 7.0 115 2-166 430-546 (572)
139 PRK08155 acetolactate synthase 98.7 1.6E-08 3.4E-13 111.5 6.0 115 2-165 428-543 (564)
140 PRK11269 glyoxylate carboligas 98.7 2.5E-08 5.5E-13 110.4 7.6 128 1-165 427-556 (591)
141 PRK07282 acetolactate synthase 98.7 3.4E-08 7.3E-13 108.8 7.7 116 1-166 426-542 (566)
142 TIGR03393 indolpyr_decarb indo 98.7 9.6E-09 2.1E-13 112.5 2.8 111 2-165 413-527 (539)
143 PRK11869 2-oxoacid ferredoxin 98.7 3.5E-08 7.6E-13 97.8 6.5 125 2-165 69-193 (280)
144 PRK06276 acetolactate synthase 98.7 4E-08 8.6E-13 108.7 7.4 114 2-165 428-543 (586)
145 PRK07449 2-succinyl-5-enolpyru 98.6 2.6E-08 5.7E-13 109.9 5.7 116 2-165 434-549 (568)
146 PRK09628 oorB 2-oxoglutarate-a 98.6 2E-08 4.3E-13 99.7 3.7 125 2-165 77-201 (277)
147 PRK05778 2-oxoglutarate ferred 98.6 3.3E-08 7.1E-13 99.2 4.9 125 2-165 79-203 (301)
148 COG0567 SucA 2-oxoglutarate de 98.6 3.7E-06 8.1E-11 93.1 20.5 205 244-455 628-857 (906)
149 PRK11866 2-oxoacid ferredoxin 98.6 9.1E-08 2E-12 94.9 6.8 123 2-165 68-192 (279)
150 PRK07525 sulfoacetaldehyde ace 98.6 7.2E-08 1.6E-12 106.7 6.7 120 2-169 444-566 (588)
151 PRK09259 putative oxalyl-CoA d 98.6 1.3E-07 2.8E-12 104.3 8.7 116 2-169 433-550 (569)
152 PLN02573 pyruvate decarboxylas 98.6 4.3E-08 9.2E-13 108.1 4.6 111 2-165 437-552 (578)
153 TIGR02177 PorB_KorB 2-oxoacid: 98.6 6.5E-08 1.4E-12 96.3 5.4 126 1-165 61-186 (287)
154 KOG0450 2-oxoglutarate dehydro 98.5 1E-05 2.3E-10 86.1 20.9 241 211-455 659-963 (1017)
155 TIGR03254 oxalate_oxc oxalyl-C 98.5 1.8E-07 3.8E-12 102.9 7.4 114 2-167 426-540 (554)
156 cd02018 TPP_PFOR Thiamine pyro 98.5 1.3E-07 2.9E-12 92.2 5.0 125 2-165 73-203 (237)
157 PRK11867 2-oxoglutarate ferred 98.5 1.2E-07 2.7E-12 94.6 4.2 123 2-165 78-202 (286)
158 TIGR03336 IOR_alpha indolepyru 98.4 2E-07 4.4E-12 103.0 4.5 119 1-164 411-529 (595)
159 COG3962 Acetolactate synthase 98.3 2E-06 4.3E-11 88.1 9.6 120 2-165 453-575 (617)
160 PF09364 XFP_N: XFP N-terminal 98.3 1.6E-06 3.4E-11 87.0 8.1 118 2-172 149-288 (379)
161 TIGR03394 indol_phenyl_DC indo 98.3 5.7E-07 1.2E-11 98.4 5.0 110 2-165 412-521 (535)
162 PLN02980 2-oxoglutarate decarb 98.2 1.4E-06 3E-11 106.4 7.2 120 2-167 770-891 (1655)
163 PRK11865 pyruvate ferredoxin o 98.1 8.6E-06 1.9E-10 81.4 8.7 133 6-172 86-220 (299)
164 cd07034 TPP_PYR_PFOR_IOR-alpha 98.0 0.00019 4.2E-09 65.5 15.4 114 242-359 41-159 (160)
165 COG3961 Pyruvate decarboxylase 98.0 9.4E-06 2E-10 84.7 6.4 49 2-52 420-468 (557)
166 KOG1185 Thiamine pyrophosphate 97.9 3.1E-05 6.8E-10 80.0 8.6 122 2-165 439-560 (571)
167 cd07035 TPP_PYR_POX_like Pyrim 97.8 0.00036 7.8E-09 63.3 12.4 114 243-359 35-154 (155)
168 KOG4166 Thiamine pyrophosphate 97.7 0.0001 2.2E-09 75.0 8.1 116 2-166 533-648 (675)
169 KOG1184 Thiamine pyrophosphate 97.5 0.00013 2.9E-09 76.1 4.9 49 2-52 424-472 (561)
170 PF02776 TPP_enzyme_N: Thiamin 97.1 0.0036 7.7E-08 58.0 10.4 116 243-361 40-162 (172)
171 COG1013 PorB Pyruvate:ferredox 97.1 0.0017 3.8E-08 65.1 8.7 125 2-165 79-204 (294)
172 TIGR03297 Ppyr-DeCO2ase phosph 96.9 0.0083 1.8E-07 62.2 11.6 121 240-362 23-154 (361)
173 TIGR03845 sulfopyru_alph sulfo 96.8 0.058 1.2E-06 49.2 15.0 110 249-361 40-155 (157)
174 COG4231 Indolepyruvate ferredo 96.7 0.011 2.4E-07 63.9 10.4 109 11-164 445-553 (640)
175 cd07039 TPP_PYR_POX Pyrimidine 96.4 0.13 2.8E-06 47.3 14.4 115 244-361 40-159 (164)
176 cd03377 TPP_PFOR_PNO Thiamine 96.2 0.012 2.6E-07 60.3 6.8 114 12-165 152-267 (365)
177 COG3960 Glyoxylate carboligase 96.0 0.016 3.4E-07 57.7 6.4 126 2-164 428-555 (592)
178 cd07037 TPP_PYR_MenD Pyrimidin 95.8 0.19 4.1E-06 46.0 12.7 113 244-359 37-161 (162)
179 COG4032 Predicted thiamine-pyr 95.6 0.024 5.1E-07 49.5 5.1 113 245-360 43-163 (172)
180 PF09363 XFP_C: XFP C-terminal 95.5 0.23 5E-06 46.6 11.8 116 388-511 34-162 (203)
181 cd02001 TPP_ComE_PpyrDC Thiami 95.4 0.19 4.2E-06 45.7 11.1 140 206-358 3-152 (157)
182 PRK12474 hypothetical protein; 95.4 2.6 5.6E-05 46.1 21.7 116 244-362 45-166 (518)
183 TIGR00118 acolac_lg acetolacta 95.2 0.41 9E-06 52.8 15.0 115 244-361 41-161 (558)
184 PRK07710 acetolactate synthase 95.2 0.32 6.9E-06 53.9 14.0 149 207-361 18-175 (571)
185 PRK07979 acetolactate synthase 95.2 0.43 9.3E-06 52.9 15.0 149 208-361 7-164 (574)
186 PRK07282 acetolactate synthase 95.1 0.43 9.4E-06 52.8 14.8 148 208-361 13-170 (566)
187 PRK08527 acetolactate synthase 95.1 0.52 1.1E-05 52.2 15.3 149 208-361 6-163 (563)
188 TIGR03457 sulphoacet_xsc sulfo 95.0 0.61 1.3E-05 51.8 15.7 116 244-362 41-161 (579)
189 TIGR02418 acolac_catab acetola 95.0 0.46 9.9E-06 52.3 14.6 115 244-361 38-158 (539)
190 PRK07064 hypothetical protein; 95.0 0.54 1.2E-05 51.7 15.2 148 208-361 6-166 (544)
191 PRK07092 benzoylformate decarb 94.8 0.59 1.3E-05 51.3 14.5 148 208-361 15-171 (530)
192 PRK07525 sulfoacetaldehyde ace 94.7 0.67 1.4E-05 51.6 15.0 116 244-362 45-165 (588)
193 PRK06965 acetolactate synthase 94.7 0.79 1.7E-05 51.0 15.5 116 243-361 60-181 (587)
194 PRK07586 hypothetical protein; 94.7 0.72 1.6E-05 50.4 14.9 149 208-362 4-162 (514)
195 PRK05858 hypothetical protein; 94.6 0.65 1.4E-05 51.1 14.5 117 242-361 42-164 (542)
196 cd07038 TPP_PYR_PDC_IPDC_like 94.6 1.3 2.7E-05 40.6 14.1 114 244-360 37-162 (162)
197 PRK09107 acetolactate synthase 94.6 0.71 1.5E-05 51.4 14.7 150 207-361 13-171 (595)
198 PRK07524 hypothetical protein; 94.5 0.93 2E-05 49.8 15.2 148 208-361 5-164 (535)
199 PRK08155 acetolactate synthase 94.4 0.54 1.2E-05 52.0 13.4 116 243-361 52-173 (564)
200 PRK08322 acetolactate synthase 94.4 0.81 1.8E-05 50.4 14.8 148 208-361 4-160 (547)
201 PRK08611 pyruvate oxidase; Pro 94.4 0.87 1.9E-05 50.5 15.0 115 244-361 45-164 (576)
202 PRK07789 acetolactate synthase 94.3 0.94 2E-05 50.7 15.1 150 207-361 33-191 (612)
203 PRK06725 acetolactate synthase 94.3 1 2.2E-05 50.0 15.1 148 208-361 18-174 (570)
204 PRK06466 acetolactate synthase 94.3 0.65 1.4E-05 51.5 13.6 115 244-361 44-164 (574)
205 PRK08979 acetolactate synthase 94.2 1 2.3E-05 49.9 15.0 115 244-361 44-164 (572)
206 PRK08199 thiamine pyrophosphat 94.1 1 2.2E-05 49.8 14.7 115 244-361 48-168 (557)
207 COG1165 MenD 2-succinyl-6-hydr 94.1 0.073 1.6E-06 56.9 5.3 111 11-170 439-551 (566)
208 PRK06456 acetolactate synthase 94.0 0.93 2E-05 50.2 14.2 147 208-361 5-165 (572)
209 PRK06457 pyruvate dehydrogenas 94.0 0.83 1.8E-05 50.4 13.7 115 244-361 41-160 (549)
210 cd02004 TPP_BZL_OCoD_HPCL Thia 93.9 0.4 8.7E-06 44.1 9.4 114 240-357 36-168 (172)
211 TIGR01504 glyox_carbo_lig glyo 93.9 1.6 3.6E-05 48.5 15.9 149 208-362 6-165 (588)
212 PRK08617 acetolactate synthase 93.9 0.95 2.1E-05 49.9 13.9 116 243-361 43-164 (552)
213 PRK08978 acetolactate synthase 93.7 1.5 3.2E-05 48.3 15.1 115 244-361 40-160 (548)
214 COG0028 IlvB Thiamine pyrophos 93.7 1.5 3.3E-05 48.3 14.8 148 208-361 5-161 (550)
215 PRK09124 pyruvate dehydrogenas 93.5 1.6 3.4E-05 48.5 14.7 115 244-361 43-162 (574)
216 PLN02470 acetolactate synthase 93.5 1.5 3.2E-05 48.9 14.5 116 243-361 52-173 (585)
217 TIGR02720 pyruv_oxi_spxB pyruv 93.4 1.6 3.6E-05 48.3 14.7 116 243-361 39-159 (575)
218 cd02014 TPP_POX Thiamine pyrop 93.4 1.5 3.2E-05 40.6 12.3 144 207-358 7-170 (178)
219 PLN02573 pyruvate decarboxylas 93.4 1.4 2.9E-05 49.0 14.0 149 207-362 18-183 (578)
220 PRK11269 glyoxylate carboligas 93.3 1.4 3.1E-05 49.0 14.1 149 208-361 7-165 (591)
221 PRK06276 acetolactate synthase 93.3 1.8 3.9E-05 48.1 15.0 148 208-361 4-160 (586)
222 TIGR02177 PorB_KorB 2-oxoacid: 93.3 1.3 2.9E-05 44.3 12.4 145 203-358 12-183 (287)
223 PRK06882 acetolactate synthase 93.3 1.5 3.3E-05 48.6 14.2 149 208-361 7-164 (574)
224 PRK06546 pyruvate dehydrogenas 93.3 1.4 3.1E-05 48.8 14.0 115 244-361 43-162 (578)
225 PRK06112 acetolactate synthase 93.2 1.7 3.7E-05 48.3 14.6 116 243-361 50-171 (578)
226 TIGR03254 oxalate_oxc oxalyl-C 93.2 2.1 4.6E-05 47.2 15.2 148 208-361 6-164 (554)
227 PRK06048 acetolactate synthase 93.1 1.8 4E-05 47.8 14.6 146 208-361 11-167 (561)
228 PRK08266 hypothetical protein; 93.1 1.8 3.8E-05 47.7 14.3 116 243-361 44-168 (542)
229 PRK08273 thiamine pyrophosphat 93.0 1.8 3.8E-05 48.3 14.3 147 208-361 6-164 (597)
230 PRK09259 putative oxalyl-CoA d 92.9 2.3 5E-05 47.1 15.0 116 243-361 48-171 (569)
231 PRK11866 2-oxoacid ferredoxin 92.9 1.8 4E-05 43.2 12.6 148 203-358 18-189 (279)
232 TIGR02176 pyruv_ox_red pyruvat 92.8 0.15 3.2E-06 60.9 5.5 114 12-165 952-1067(1165)
233 cd02010 TPP_ALS Thiamine pyrop 92.4 2.7 5.8E-05 38.9 12.5 116 240-359 36-168 (177)
234 PRK06163 hypothetical protein; 92.2 7.3 0.00016 37.0 15.4 144 202-359 14-171 (202)
235 TIGR00173 menD 2-succinyl-5-en 92.1 2.4 5.1E-05 45.3 13.3 147 208-361 3-166 (432)
236 cd03376 TPP_PFOR_porB_like Thi 92.1 3.7 8E-05 40.0 13.5 95 260-357 72-196 (235)
237 CHL00099 ilvB acetohydroxyacid 91.8 1.4 3E-05 49.0 11.5 147 208-361 13-173 (585)
238 PRK07418 acetolactate synthase 91.6 3.6 7.9E-05 46.0 14.6 115 244-361 62-182 (616)
239 PRK07449 2-succinyl-5-enolpyru 91.4 2.4 5.1E-05 47.0 12.8 153 204-361 8-174 (568)
240 PRK11864 2-ketoisovalerate fer 91.3 2 4.4E-05 43.2 10.9 103 254-358 73-204 (300)
241 cd02009 TPP_SHCHC_synthase Thi 91.2 2.2 4.8E-05 39.4 10.5 114 240-357 39-171 (175)
242 PRK08327 acetolactate synthase 91.1 4.5 9.7E-05 44.8 14.6 150 207-361 9-181 (569)
243 TIGR03394 indol_phenyl_DC indo 91.1 3.7 8E-05 45.1 13.7 149 207-362 2-166 (535)
244 cd02015 TPP_AHAS Thiamine pyro 91.0 1.9 4.1E-05 40.2 9.9 115 240-358 38-171 (186)
245 PRK09628 oorB 2-oxoglutarate-a 91.0 6 0.00013 39.6 13.9 143 205-358 29-198 (277)
246 cd03372 TPP_ComE Thiamine pyro 91.0 3.3 7.1E-05 38.5 11.4 137 205-358 2-152 (179)
247 TIGR03846 sulfopy_beta sulfopy 90.6 2.2 4.9E-05 39.7 10.0 142 205-358 2-153 (181)
248 cd02018 TPP_PFOR Thiamine pyro 90.3 8 0.00017 37.7 13.9 116 241-358 51-200 (237)
249 PRK13030 2-oxoacid ferredoxin 89.6 1.5 3.3E-05 52.0 9.5 47 4-51 479-525 (1159)
250 PRK11867 2-oxoglutarate ferred 89.5 5.6 0.00012 40.0 12.3 145 203-358 28-199 (286)
251 PRK09193 indolepyruvate ferred 88.9 1.9 4.1E-05 51.1 9.6 42 8-50 496-537 (1165)
252 KOG1184 Thiamine pyrophosphate 88.9 2.4 5.2E-05 45.2 9.4 150 207-362 6-171 (561)
253 cd02013 TPP_Xsc_like Thiamine 88.7 2.1 4.6E-05 40.3 8.3 145 207-358 9-176 (196)
254 cd02003 TPP_IolD Thiamine pyro 88.7 1.7 3.7E-05 41.3 7.7 113 240-358 36-181 (205)
255 PRK11865 pyruvate ferredoxin o 88.4 11 0.00024 38.0 13.5 103 254-358 73-208 (299)
256 COG1071 AcoA Pyruvate/2-oxoglu 87.8 2.8 6E-05 43.2 8.9 107 248-357 138-257 (358)
257 cd03375 TPP_OGFOR Thiamine pyr 87.3 13 0.00027 35.0 12.6 144 203-358 10-181 (193)
258 cd03371 TPP_PpyrDC Thiamine py 87.0 16 0.00034 34.2 13.0 112 242-358 41-160 (188)
259 PRK13029 2-oxoacid ferredoxin 86.9 3.3 7.1E-05 49.2 9.9 41 9-50 511-551 (1186)
260 cd02006 TPP_Gcl Thiamine pyrop 86.9 2.5 5.5E-05 40.0 7.7 147 207-358 13-191 (202)
261 PLN02980 2-oxoglutarate decarb 86.4 8.4 0.00018 48.3 13.7 151 205-360 301-466 (1655)
262 COG3961 Pyruvate decarboxylase 86.1 4.2 9.1E-05 43.5 9.3 148 207-361 6-170 (557)
263 cd02012 TPP_TK Thiamine pyroph 84.5 8.4 0.00018 37.9 10.3 102 255-359 110-225 (255)
264 cd02007 TPP_DXS Thiamine pyrop 84.3 8 0.00017 36.4 9.6 97 255-358 80-187 (195)
265 cd00568 TPP_enzymes Thiamine p 82.8 4.4 9.6E-05 36.6 7.1 100 255-358 51-166 (168)
266 cd02002 TPP_BFDC Thiamine pyro 82.6 7.8 0.00017 35.6 8.7 144 207-357 6-175 (178)
267 PRK11869 2-oxoacid ferredoxin 82.1 19 0.00042 36.0 11.7 149 202-358 18-190 (280)
268 TIGR03393 indolpyr_decarb indo 81.9 24 0.00051 38.8 13.6 146 208-362 4-167 (539)
269 PRK05778 2-oxoglutarate ferred 81.8 23 0.00049 35.9 12.2 146 202-358 28-200 (301)
270 PRK06154 hypothetical protein; 81.1 13 0.00028 41.1 11.3 112 243-361 55-176 (565)
271 cd02005 TPP_PDC_IPDC Thiamine 80.7 16 0.00034 34.0 10.1 116 241-358 39-171 (183)
272 PF02775 TPP_enzyme_C: Thiamin 80.7 2.4 5.3E-05 38.0 4.5 112 241-356 17-151 (153)
273 cd02008 TPP_IOR_alpha Thiamine 79.3 22 0.00049 32.7 10.6 98 258-358 59-174 (178)
274 PRK12315 1-deoxy-D-xylulose-5- 76.8 16 0.00035 40.6 10.2 103 254-358 117-240 (581)
275 COG3962 Acetolactate synthase 75.8 35 0.00076 36.3 11.4 155 200-360 6-188 (617)
276 cd01460 vWA_midasin VWA_Midasi 74.2 13 0.00028 36.9 7.7 38 13-50 166-205 (266)
277 cd03027 GRX_DEP Glutaredoxin ( 74.0 12 0.00025 28.8 6.1 66 390-457 2-68 (73)
278 cd03028 GRX_PICOT_like Glutare 73.9 11 0.00024 30.5 6.2 67 388-458 7-81 (90)
279 PRK05444 1-deoxy-D-xylulose-5- 71.6 20 0.00043 39.9 9.4 100 255-358 122-239 (580)
280 PF00676 E1_dh: Dehydrogenase 71.1 9.6 0.00021 38.6 6.2 101 256-358 107-222 (300)
281 cd01481 vWA_collagen_alpha3-VI 70.3 14 0.0003 33.7 6.6 55 391-448 110-164 (165)
282 TIGR00365 monothiol glutaredox 69.0 16 0.00035 30.1 6.1 70 388-458 11-85 (97)
283 PLN02790 transketolase 68.8 41 0.00088 38.1 11.1 77 279-358 152-235 (654)
284 cd02000 TPP_E1_PDC_ADC_BCADC T 67.3 20 0.00043 36.1 7.6 88 268-358 127-225 (293)
285 COG2241 CobL Precorrin-6B meth 67.2 35 0.00075 32.6 8.6 94 389-490 95-189 (210)
286 CHL00149 odpA pyruvate dehydro 64.7 39 0.00084 34.9 9.2 90 267-358 157-256 (341)
287 TIGR03181 PDH_E1_alph_x pyruva 64.0 30 0.00064 35.7 8.2 101 254-358 130-243 (341)
288 PRK05899 transketolase; Review 60.6 80 0.0017 35.5 11.5 87 268-358 151-245 (624)
289 KOG0225 Pyruvate dehydrogenase 60.6 45 0.00097 34.0 8.2 86 266-356 185-282 (394)
290 PF03358 FMN_red: NADPH-depend 60.0 23 0.00051 31.3 5.9 64 399-462 16-93 (152)
291 cd07033 TPP_PYR_DXS_TK_like Py 59.6 30 0.00064 31.2 6.5 31 127-162 124-154 (156)
292 PRK12571 1-deoxy-D-xylulose-5- 58.0 62 0.0014 36.5 10.0 50 255-305 128-181 (641)
293 PLN02269 Pyruvate dehydrogenas 57.3 53 0.0012 34.2 8.7 76 280-358 176-256 (362)
294 COG0075 Serine-pyruvate aminot 56.7 98 0.0021 32.5 10.5 124 385-513 77-216 (383)
295 PTZ00089 transketolase; Provis 56.6 1.1E+02 0.0024 34.6 11.8 78 279-359 163-247 (661)
296 TIGR02190 GlrX-dom Glutaredoxi 56.0 59 0.0013 25.4 7.0 71 387-461 6-77 (79)
297 PF04273 DUF442: Putative phos 55.8 16 0.00035 31.1 3.8 41 123-164 53-95 (110)
298 cd00860 ThrRS_anticodon ThrRS 55.4 72 0.0016 25.1 7.6 59 390-450 3-62 (91)
299 KOG0523 Transketolase [Carbohy 54.3 17 0.00036 39.7 4.5 64 120-184 238-303 (632)
300 cd06586 TPP_enzyme_PYR Pyrimid 52.7 20 0.00044 31.7 4.2 29 19-50 68-96 (154)
301 PRK12754 transketolase; Review 50.9 1.1E+02 0.0024 34.6 10.5 78 279-359 161-244 (663)
302 TIGR00204 dxs 1-deoxy-D-xylulo 50.3 93 0.002 34.9 9.8 50 255-305 116-173 (617)
303 PRK11200 grxA glutaredoxin 1; 49.9 1E+02 0.0022 24.2 7.6 65 398-464 9-81 (85)
304 TIGR02189 GlrX-like_plant Glut 49.4 96 0.0021 25.6 7.5 68 388-457 7-78 (99)
305 PRK12753 transketolase; Review 49.2 1.4E+02 0.003 33.9 11.0 78 279-359 161-244 (663)
306 PF02662 FlpD: Methyl-viologen 47.4 1.9E+02 0.0041 25.0 10.4 59 391-449 2-62 (124)
307 PF03129 HGTP_anticodon: Antic 47.2 73 0.0016 25.5 6.4 57 390-449 1-62 (94)
308 PF00456 Transketolase_N: Tran 45.9 49 0.0011 34.0 6.3 90 268-360 145-242 (332)
309 PLN02374 pyruvate dehydrogenas 44.8 92 0.002 33.3 8.2 89 267-357 223-321 (433)
310 cd00858 GlyRS_anticodon GlyRS 43.7 1.1E+02 0.0024 26.0 7.4 57 389-449 27-87 (121)
311 TIGR00612 ispG_gcpE 1-hydroxy- 43.5 2.2E+02 0.0047 29.2 10.1 46 474-524 123-173 (346)
312 cd03418 GRX_GRXb_1_3_like Glut 43.3 79 0.0017 23.9 5.8 59 398-457 8-68 (75)
313 cd00859 HisRS_anticodon HisRS 43.0 1.2E+02 0.0025 23.5 6.9 56 390-448 3-60 (91)
314 TIGR02181 GRX_bact Glutaredoxi 42.8 60 0.0013 25.0 5.1 60 398-458 7-67 (79)
315 COG2089 SpsE Sialic acid synth 42.8 97 0.0021 31.6 7.5 68 391-459 149-223 (347)
316 COG0426 FpaA Uncharacterized f 42.2 52 0.0011 34.4 5.7 53 390-445 248-303 (388)
317 PLN02234 1-deoxy-D-xylulose-5- 42.1 3.1E+02 0.0066 31.0 12.1 104 254-359 181-319 (641)
318 PF03960 ArsC: ArsC family; I 41.8 52 0.0011 27.6 4.8 40 399-439 5-44 (110)
319 PF01565 FAD_binding_4: FAD bi 41.4 1.1E+02 0.0025 26.3 7.2 76 329-407 3-81 (139)
320 COG0299 PurN Folate-dependent 40.1 95 0.0021 29.3 6.5 93 135-248 10-107 (200)
321 KOG1185 Thiamine pyrophosphate 39.1 5.4E+02 0.012 27.9 17.2 121 236-360 45-172 (571)
322 COG1165 MenD 2-succinyl-6-hydr 38.7 3E+02 0.0065 30.2 10.8 139 202-346 9-152 (566)
323 PRK10638 glutaredoxin 3; Provi 38.2 1E+02 0.0023 24.1 5.9 65 391-457 4-69 (83)
324 TIGR02690 resist_ArsH arsenica 38.1 1.5E+02 0.0034 28.4 8.0 62 401-462 44-113 (219)
325 cd03035 ArsC_Yffb Arsenate Red 37.6 74 0.0016 26.6 5.1 41 399-440 8-48 (105)
326 PRK03767 NAD(P)H:quinone oxido 37.4 1.8E+02 0.0038 27.3 8.3 68 397-465 13-95 (200)
327 TIGR03845 sulfopyru_alph sulfo 37.2 2.3E+02 0.0049 25.6 8.6 38 10-50 57-95 (157)
328 TIGR01616 nitro_assoc nitrogen 36.7 81 0.0017 27.5 5.3 46 393-439 3-49 (126)
329 cd02017 TPP_E1_EcPDC_like Thia 36.3 4.1E+02 0.0089 27.9 11.2 52 279-333 162-218 (386)
330 COG4448 AnsA L-asparaginase II 36.3 22 0.00048 34.8 1.8 53 388-440 77-131 (339)
331 PRK00366 ispG 4-hydroxy-3-meth 35.6 2.6E+02 0.0056 28.9 9.3 46 474-524 132-182 (360)
332 TIGR03182 PDH_E1_alph_y pyruva 35.6 2.2E+02 0.0047 28.9 9.1 89 267-358 132-231 (315)
333 cd07037 TPP_PYR_MenD Pyrimidin 35.5 1.5E+02 0.0032 27.0 7.1 38 8-48 58-95 (162)
334 cd03029 GRX_hybridPRX5 Glutare 35.3 1.9E+02 0.0042 21.7 7.5 67 391-461 3-70 (72)
335 PF14097 SpoVAE: Stage V sporu 35.0 3.7E+02 0.0079 24.8 9.3 73 390-465 1-80 (180)
336 cd00861 ProRS_anticodon_short 34.6 2E+02 0.0044 22.7 7.2 57 390-449 3-64 (94)
337 PLN02582 1-deoxy-D-xylulose-5- 34.6 3.7E+02 0.0079 30.6 11.3 59 245-305 140-206 (677)
338 cd00738 HGTP_anticodon HGTP an 34.0 1.9E+02 0.0041 22.7 6.9 57 390-449 3-64 (94)
339 cd03033 ArsC_15kD Arsenate Red 33.8 1.1E+02 0.0023 26.1 5.5 41 399-440 9-49 (113)
340 cd01080 NAD_bind_m-THF_DH_Cycl 33.5 1.2E+02 0.0027 27.7 6.3 52 388-447 44-95 (168)
341 PRK10853 putative reductase; P 32.9 94 0.002 26.7 5.1 43 396-439 5-48 (118)
342 PF00258 Flavodoxin_1: Flavodo 32.1 1E+02 0.0022 26.7 5.4 46 397-447 8-53 (143)
343 PF00731 AIRC: AIR carboxylase 32.0 2.6E+02 0.0057 25.2 7.9 69 390-460 2-75 (150)
344 COG4635 HemG Flavodoxin [Energ 31.8 1.9E+02 0.0041 26.5 6.8 66 392-465 3-73 (175)
345 TIGR03569 NeuB_NnaB N-acetylne 31.7 5.8E+02 0.013 26.2 11.4 69 391-460 135-212 (329)
346 COG0655 WrbA Multimeric flavod 31.5 2.1E+02 0.0046 26.9 7.8 69 396-464 13-100 (207)
347 cd05125 Mth938_2P1-like Mth938 30.7 82 0.0018 26.9 4.3 37 387-423 53-90 (114)
348 TIGR00232 tktlase_bact transke 30.4 1E+02 0.0023 34.8 6.3 30 20-50 428-457 (653)
349 COG1393 ArsC Arsenate reductas 30.2 1.4E+02 0.003 25.6 5.6 40 400-440 11-50 (117)
350 PF02861 Clp_N: Clp amino term 29.8 52 0.0011 23.1 2.6 26 487-512 28-53 (53)
351 PRK00694 4-hydroxy-3-methylbut 29.7 2.2E+02 0.0048 31.4 8.2 47 474-525 160-210 (606)
352 TIGR02194 GlrX_NrdH Glutaredox 29.5 1.4E+02 0.003 22.6 5.1 57 398-455 7-64 (72)
353 COG1104 NifS Cysteine sulfinat 29.5 1.3E+02 0.0029 31.5 6.3 75 392-466 93-171 (386)
354 cd07036 TPP_PYR_E1-PDHc-beta_l 29.4 1.3E+02 0.0027 27.6 5.6 31 127-162 135-165 (167)
355 PF04430 DUF498: Protein of un 29.4 45 0.00097 28.2 2.5 37 387-423 52-89 (110)
356 TIGR01465 cobM_cbiF precorrin- 29.4 3.2E+02 0.0069 25.9 8.8 61 430-494 145-208 (229)
357 cd03034 ArsC_ArsC Arsenate Red 29.2 1.3E+02 0.0028 25.4 5.2 41 399-440 8-48 (112)
358 TIGR00014 arsC arsenate reduct 28.9 1.3E+02 0.0028 25.5 5.2 41 399-440 8-48 (114)
359 cd06063 H2MP_Cyano-H2up This g 28.6 2.3E+02 0.005 25.1 7.1 55 391-449 1-61 (146)
360 KOG1145 Mitochondrial translat 28.4 1.6E+02 0.0035 32.3 6.8 106 10-170 225-343 (683)
361 PF03033 Glyco_transf_28: Glyc 28.2 1E+02 0.0023 26.4 4.7 34 391-424 1-36 (139)
362 TIGR02691 arsC_pI258_fam arsen 28.2 1.2E+02 0.0027 26.2 5.1 87 405-509 42-128 (129)
363 PRK10569 NAD(P)H-dependent FMN 27.5 2.4E+02 0.0051 26.4 7.2 62 401-462 18-89 (191)
364 KOG2862 Alanine-glyoxylate ami 27.5 3.1E+02 0.0067 28.0 8.1 71 385-458 89-161 (385)
365 PRK10824 glutaredoxin-4; Provi 27.4 1.6E+02 0.0036 25.1 5.6 69 388-457 14-87 (115)
366 COG1086 Predicted nucleoside-d 27.3 3E+02 0.0066 30.4 8.7 90 388-485 177-288 (588)
367 PRK10026 arsenate reductase; P 27.2 1.6E+02 0.0036 26.1 5.7 42 398-440 10-51 (141)
368 cd06062 H2MP_MemB-H2up Endopep 27.0 2.7E+02 0.0058 24.6 7.2 54 391-448 1-61 (146)
369 PRK02048 4-hydroxy-3-methylbut 26.8 2.8E+02 0.0061 30.8 8.4 46 474-524 156-205 (611)
370 cd07034 TPP_PYR_PFOR_IOR-alpha 26.0 1.7E+02 0.0036 26.1 5.8 35 13-50 67-101 (160)
371 cd03798 GT1_wlbH_like This fam 25.8 5.4E+02 0.012 25.0 10.2 74 427-515 266-346 (377)
372 cd00115 LMWPc Substituted upda 25.2 2.6E+02 0.0056 24.3 6.8 85 405-511 49-140 (141)
373 PF03853 YjeF_N: YjeF-related 25.1 2E+02 0.0044 26.1 6.2 41 391-431 29-69 (169)
374 COG0074 SucD Succinyl-CoA synt 24.9 4.1E+02 0.0088 26.7 8.4 63 399-466 53-116 (293)
375 PRK15473 cbiF cobalt-precorrin 24.9 5.5E+02 0.012 25.0 9.7 60 431-493 155-216 (257)
376 COG0543 UbiB 2-polyprenylpheno 24.7 3.4E+02 0.0073 26.5 8.1 63 388-451 107-173 (252)
377 PRK10329 glutaredoxin-like pro 24.7 1.9E+02 0.0041 22.8 5.2 60 391-455 3-65 (81)
378 cd03415 CbiX_CbiC Archaeal sir 24.6 4.1E+02 0.0088 23.0 7.6 58 390-447 2-65 (125)
379 cd03032 ArsC_Spx Arsenate Redu 24.6 1.9E+02 0.0041 24.4 5.5 41 398-439 8-48 (115)
380 PRK13344 spxA transcriptional 24.5 2E+02 0.0043 25.2 5.7 42 398-440 8-49 (132)
381 COG0695 GrxC Glutaredoxin and 24.1 2.2E+02 0.0047 22.4 5.4 62 391-453 3-66 (80)
382 cd07035 TPP_PYR_POX_like Pyrim 23.9 1.2E+02 0.0025 26.9 4.3 29 19-50 68-96 (155)
383 cd00248 Mth938-like Mth938-lik 23.8 1.2E+02 0.0025 25.6 4.0 35 389-423 53-88 (109)
384 PF10740 DUF2529: Protein of u 23.7 2.7E+02 0.0059 25.6 6.5 119 336-459 24-156 (172)
385 cd01452 VWA_26S_proteasome_sub 23.7 2.9E+02 0.0063 25.8 7.0 59 391-450 111-176 (187)
386 COG4565 CitB Response regulato 23.7 2.2E+02 0.0048 27.3 6.1 97 320-439 18-116 (224)
387 TIGR00596 rad1 DNA repair prot 23.7 2.8E+02 0.0061 32.3 8.2 70 279-348 644-725 (814)
388 PRK10264 hydrogenase 1 maturat 23.6 3.3E+02 0.0071 25.6 7.4 56 389-448 4-66 (195)
389 COG0680 HyaD Ni,Fe-hydrogenase 23.6 2.3E+02 0.005 25.8 6.1 55 390-448 3-64 (160)
390 COG1945 Pyruvoyl-dependent arg 23.5 37 0.00079 30.8 0.8 69 391-460 8-86 (163)
391 TIGR03567 FMN_reduc_SsuE FMN r 23.4 3E+02 0.0066 24.9 7.1 64 400-463 16-89 (171)
392 cd02977 ArsC_family Arsenate R 23.0 1.9E+02 0.0042 23.7 5.2 41 398-439 7-47 (105)
393 cd02016 TPP_E1_OGDC_like Thiam 23.0 2.8E+02 0.0062 27.5 7.0 77 280-358 157-243 (265)
394 PF14258 DUF4350: Domain of un 22.8 2.5E+02 0.0055 21.1 5.5 37 405-450 9-45 (70)
395 COG0821 gcpE 1-hydroxy-2-methy 22.5 3.5E+02 0.0075 27.8 7.5 33 473-510 124-158 (361)
396 PRK10466 hybD hydrogenase 2 ma 22.4 4.2E+02 0.0092 23.9 7.7 56 390-449 2-64 (164)
397 PRK12559 transcriptional regul 22.0 2.4E+02 0.0052 24.6 5.7 40 399-439 9-48 (131)
398 TIGR01617 arsC_related transcr 22.0 1.7E+02 0.0037 24.7 4.8 43 397-440 6-48 (117)
399 cd03409 Chelatase_Class_II Cla 21.3 3.7E+02 0.008 21.5 6.6 60 391-450 2-69 (101)
400 PF03102 NeuB: NeuB family; I 21.1 7.8E+02 0.017 24.0 10.6 70 391-461 115-191 (241)
401 cd06068 H2MP_like-1 Putative [ 21.0 3.9E+02 0.0085 23.5 7.0 54 393-449 2-61 (144)
402 cd01475 vWA_Matrilin VWA_Matri 20.9 2.1E+02 0.0044 27.3 5.6 55 391-448 112-168 (224)
403 PRK09004 FMN-binding protein M 20.9 5.9E+02 0.013 22.5 10.3 81 392-481 4-92 (146)
404 cd03799 GT1_amsK_like This is 20.6 6.2E+02 0.013 24.9 9.4 75 427-514 243-328 (355)
405 PF00289 CPSase_L_chain: Carba 20.6 4.1E+02 0.0088 22.4 6.7 30 390-422 4-33 (110)
406 cd00518 H2MP Hydrogenase speci 20.2 4E+02 0.0088 23.1 6.9 53 393-449 2-60 (139)
407 PRK00170 azoreductase; Reviewe 20.0 4.2E+02 0.0092 24.4 7.5 64 401-464 20-111 (201)
No 1
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.4e-99 Score=823.86 Aligned_cols=522 Identities=93% Similarity=1.413 Sum_probs=475.8
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
||+|.++++++++|||++|||++++|++|||||+|+.|++|+++||+||+++|+|+..+||.++++|.++++|.+++.++
T Consensus 156 ~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~ 235 (677)
T PLN02582 156 MAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSR 235 (677)
T ss_pred HHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcch
Confidence 57889999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|+.+|+..+++++++........++.....++++.|...++|++|||.|++++||||+++|.++|+++++...++|++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vi 315 (677)
T PLN02582 236 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLI 315 (677)
T ss_pred hHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999999998885455666677777888887774447899999999999999999999999999998422689999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
|++|+||+||+++|+++.+||+..+|++++|++........+|.++|+++|.+++++||+++++++|+++++++..|+++
T Consensus 316 hv~T~KGkG~~~ae~~~~~~H~~~~f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~ 395 (677)
T PLN02582 316 HVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARR 395 (677)
T ss_pred EEEecCCCCCChhhcChhhcCCCCCCCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHH
Confidence 99999999999999999999999999999987643323346899999999999999999999999999999999999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||||+||+|++|+++|+|+|+.|+|||+++|++|++|++|||++++|++++||+++++++|+.|.+|+|||+.+|++
T Consensus 396 fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia 475 (677)
T PLN02582 396 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 475 (677)
T ss_pred cCccccccCcCHHHHHHHHHHHHHCCCeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
++|.+||++|++|+|++|+..++++|+...++|+|||++|.......+|+....+.+++|+++++++|.|++|||+|+++
T Consensus 476 ~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v 555 (677)
T PLN02582 476 YMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAV 555 (677)
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHH
Confidence 99999999999999999999999999865669999999998633222332222245788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecC
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLP 480 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~ 480 (525)
+.|++|++.|+++||+++|||++|++|||++.|.+++++++.+||+|+|..||||+.|++++.+++....+.++.++|++
T Consensus 556 ~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~ 635 (677)
T PLN02582 556 QSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLP 635 (677)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCC
Confidence 99999999999999999999999999999999999999899999999998899999999999988643223688999999
Q ss_pred CccCCCCChHHHHHHcCCCHHHHHHHHHHHhhcccccccccc
Q 009809 481 DRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 522 (525)
Q Consensus 481 d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~~~~~ 522 (525)
|+|+++|+.++|++++||+++.|+++|++++...+....|||
T Consensus 636 d~F~~~G~~~~L~~~~GL~~e~I~~~i~~~l~~~~~~~~~~~ 677 (677)
T PLN02582 636 DRYIDHGAPADQLAEAGLTPSHIAATVLNVLGQTREALQIMS 677 (677)
T ss_pred CcccCcCCHHHHHHHhCcCHHHHHHHHHHHHhcccccccccC
Confidence 999999999999999999999999999999965566888886
No 2
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1e-96 Score=762.13 Aligned_cols=495 Identities=55% Similarity=0.891 Sum_probs=465.5
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhcc-ccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG-YLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~-~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
||.|+.+++.+++|+|+||||+++.||+|||||.|+ ..+.|+++|+|||+|+ .++++|+++++|.+++++
T Consensus 127 ~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMS---------Is~nvGal~~~L~~l~~~ 197 (627)
T COG1154 127 MAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMS---------ISPNVGALSKHLARLRSG 197 (627)
T ss_pred HHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcc---------cCCCccHHHHHHHHHhcc
Confidence 577888999999999999999999999999999999 5569999999999997 378899999999999999
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
+.|..+|+..++++++.++......++.++..++++.+. .+|+.+||+|++++||||+++|..+|+.+|+ .++|++
T Consensus 198 ~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~--~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvl 273 (627)
T COG1154 198 PFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVL 273 (627)
T ss_pred chHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCch--hhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEE
Confidence 999999999999999988888888899999999988875 8999999999999999999999999999999 799999
Q ss_pred EEEEccCCCCchhhhhccccccCCCCCCC-CCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHH
Q 009809 160 IHVVTEKGRGYPYAEKAADKYHGVAKFDP-ATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFL 238 (525)
Q Consensus 160 i~v~t~kg~g~~~~~~~~~~~h~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~ 238 (525)
+||.|.||+||++||+++.+||++.+|++ ++|+..+..+...+|.++|++.|.+++++|+++|.+++.+...+++..|.
T Consensus 274 lHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~ 353 (627)
T COG1154 274 LHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQSKKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFS 353 (627)
T ss_pred EEEEecCCCCCChhhcChhhccCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHH
Confidence 99999999999999999999999999995 88876554455678999999999999999999999999999999999999
Q ss_pred HhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhh
Q 009809 239 RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFD 318 (525)
Q Consensus 239 ~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d 318 (525)
++||+||||+||+||+++.+|+|+|..|++|++++|+.|++|+|||+++++|.+++||+++.+++|+.|.||+|||...|
T Consensus 354 ~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fD 433 (627)
T COG1154 354 KKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFD 433 (627)
T ss_pred HhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEech
Q 009809 319 VTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGT 398 (525)
Q Consensus 319 ~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~ 398 (525)
++++|.||||.+++|+|.+|+..++.+++..+++|+.||++|.+....... ......++|++.++++|.|+.|+++|.
T Consensus 434 ls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~--~~~~~~~~Gk~~i~~~G~~vail~~G~ 511 (627)
T COG1154 434 LSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILT--PELEPLEIGKGELLKEGEKVAILAFGT 511 (627)
T ss_pred HHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcc--cccccccccceEEEecCCcEEEEecch
Confidence 999999999999999999999999999998777999999999864432211 113567899999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEe
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPL 477 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~i 477 (525)
++..|++|++.|.+.||+++|||++++||+|++.|+++.+.++.+||+||+. .||+|+.|.+++.++++ ..+++++
T Consensus 512 ~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~l 588 (627)
T COG1154 512 MLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNL 588 (627)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEe
Confidence 9999999999999999999999999999999999999999999999999998 79999999999999986 4789999
Q ss_pred ecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 478 VLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 478 g~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
|++|.|+++|+++++++.+||+++.|+++|.+++..
T Consensus 589 glpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~~ 624 (627)
T COG1154 589 GLPDEFIDHGSPEELLAELGLDAEGIARRILEWLKA 624 (627)
T ss_pred cCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998865
No 3
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.6e-94 Score=777.06 Aligned_cols=501 Identities=59% Similarity=1.002 Sum_probs=449.5
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
||.|+++++++++||++||||+|+.||+|||||.|+..+.|+++|+|||+|++.++- -.|...++|+++++|.++++++
T Consensus 201 ~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~-~~~~~~~vG~ls~~l~~l~~~~ 279 (701)
T PLN02225 201 LAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNM-EEGSKASISALSSIMSKIQSSK 279 (701)
T ss_pred HHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCC-CCccCCccchHHHHHHHHhccc
Confidence 578899999999999999999999999999999999999999999999999753331 1333344999999999999999
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|+.+|+.+++++++++..++....+.+++.+.++.+...++|+++|+.|++++||||+++|..+|+.+++...++|++|
T Consensus 280 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~Pvlv 359 (701)
T PLN02225 280 IFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLV 359 (701)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEE
Confidence 99999999999999987667888788999999988775458999999999999999999999999999998533599999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
||.|.||+. +++|+.. ......+|+++|+++|.+++++||+++++++|+..++++..|+++
T Consensus 360 Hv~T~KGkd------------------~~tg~~~-~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~ 420 (701)
T PLN02225 360 HVITEENRD------------------AETGKNI-MVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQER 420 (701)
T ss_pred EEEecCCCC------------------CCCCCcC-CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHH
Confidence 999999983 2333311 112246899999999999999999999999999988889999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||||+||+||+|+++|+|+|+.|+|||+++|++|++|++|||++++|++++||+++++++|+.|.+|+|||+.+|++
T Consensus 421 fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia 500 (701)
T PLN02225 421 FPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIA 500 (701)
T ss_pred ccccccccCccHHHHHHHHHHHHHCCCEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
+||.+|||+|++|+|++|+..++++|+...++|+|||++|........+ ....+.+++||++++++|.|++||++|+++
T Consensus 501 ~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~~~~~~~~-~~~~~~~~iGK~~vlreG~dvtIia~G~mv 579 (701)
T PLN02225 501 FMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNMNYL-VPTGLPIEIGRGRVLVEGQDVALLGYGAMV 579 (701)
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEEEEecccccCCCCcC-CCCCccccCcceEEEEeCCCEEEEeccHHH
Confidence 9999999999999999999999999876567899999999864322100 011356789999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecC
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLP 480 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~ 480 (525)
..|++|++.|+++||+++|||+++++|+|++.|.+++++++.|||+|||..||+|++|++++.++++...+.+++++|++
T Consensus 580 ~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGip 659 (701)
T PLN02225 580 QNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLP 659 (701)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999998899999999999998753223679999999
Q ss_pred CccCCCCChHHHHHHcCCCHHHHHHHHHHHhhcccccccccc
Q 009809 481 DRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 522 (525)
Q Consensus 481 d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~~~~~ 522 (525)
|.|+++|+++++++++||+++.|+++|+++++..++++++||
T Consensus 660 d~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~~~~~~~~~~~ 701 (701)
T PLN02225 660 DGYIEEASPREQLALAGLTGHHIAATALSLLGRTREALLLMS 701 (701)
T ss_pred CcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHhhcccceEecC
Confidence 999999999999999999999999999999977788888886
No 4
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=4.1e-91 Score=761.16 Aligned_cols=493 Identities=49% Similarity=0.798 Sum_probs=447.9
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
||+|.++++++.+|+|++|||+++||++|||||+|+.+++|+++||+||++++ ..+++.++..|.++|.++
T Consensus 123 ~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i---------~~~~~~~~~~l~~~~~~~ 193 (617)
T TIGR00204 123 IAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSI---------SENVGALSNHLAQLRSGS 193 (617)
T ss_pred HHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCccc---------CCCchHHHHHHHHhhccc
Confidence 57899999999999999999999999999999999999999999999999762 345677899999999999
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|..+++.++.+++...+......++.++..++++.+ .++|++|||.|++++||||+++|.++++.+++ .++|++|
T Consensus 194 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~--~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i 269 (617)
T TIGR00204 194 LYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP--GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFL 269 (617)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc--cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEE
Confidence 9999999999888766533333667777788887777 38899999999999999999999999999998 5789999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
|++|+||+||+++++++..||+.++|+++++..........+|+++|+++|.+++++||+++++++|+.+++++++|+++
T Consensus 270 ~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~ 349 (617)
T TIGR00204 270 HIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKSALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRK 349 (617)
T ss_pred EEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCCCCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHH
Confidence 99999999999998877789999999988875433323456899999999999999999999999999877789999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||+|+||+|++|+++|+|+|+.|++||+++|++|++|++|||++++|++++||+++++++|+.|.+|+|||+.+|++
T Consensus 350 fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia 429 (617)
T TIGR00204 350 FPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDIS 429 (617)
T ss_pred CccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
+++.+||++|++|+|+.|++.++++|++..++|+|||++|........++ ..+.+++|++.++++|.|++||++|.++
T Consensus 430 ~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~~~--~~~~~~~Gk~~vlr~G~dvtIva~G~~v 507 (617)
T TIGR00204 430 YLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRYPRGNAVGVELTP--EPEKLPIGKSEVLRKGEKILILGFGTLV 507 (617)
T ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCCcCCcccCC--ccccccCCceEEEEcCCCEEEEEcCHHH
Confidence 99999999999999999999999999875569999999997643221111 1356789999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeec
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~ 479 (525)
+.|++|++.|+++||+++|||++|++|||+++|.+++++++++||+|||. .||||++|++++.++++ +.++.++|+
T Consensus 508 ~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~ 584 (617)
T TIGR00204 508 PEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGI 584 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999998 79999999999999863 568999999
Q ss_pred CCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 480 PDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 480 ~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
+|.|+++|++++|++++||++++|+++|++++
T Consensus 585 ~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 585 PDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred CCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 99999999999999999999999999998775
No 5
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=9.5e-90 Score=752.49 Aligned_cols=502 Identities=56% Similarity=0.920 Sum_probs=451.9
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|+|.++.+++++|||++|||++++|++||++++|+++++|+++|++||++++ + .+++.++..++.++.+.
T Consensus 131 ~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i------~---~~~~~~~~~l~~~~~~~ 201 (641)
T PRK12571 131 FAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSI------A---PPVGALAAYLSTLRSSD 201 (641)
T ss_pred HHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeee------c---CCccHHHHHHHHHhcCc
Confidence 47888999999999999999999999999999999999999999999999772 3 34577888999999999
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|+.+|+.++++++.+...+....++.++..+++..+ ...|++|||+|++++||||+++|.+|++++++. .++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I 278 (641)
T PRK12571 202 PFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLV 278 (641)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEE
Confidence 9999999999999988766776777788888877765 468999999999889999999999999999863 4789999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
|++|+||+|++++++++.+|||.++|++++++.....+...+|+++|+++|.+++++||+++++++|+.++.+++.|+++
T Consensus 279 ~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~ 358 (641)
T PRK12571 279 HVVTEKGRGYAPAEADEDKYHAVGKFDVVTGLQKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKR 358 (641)
T ss_pred EEEecCccCcchhhcCCCcccCCCCcCCCCCcccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHh
Confidence 99999999999999878899999999988875433333456899999999999999999999999999888889999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||+|+||+|++|+++|+|+|+.|++||+++|++|++|++|||++++|++++||++++++.|+.|.+|+|||+.+|++
T Consensus 359 ~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia 438 (641)
T PRK12571 359 FPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLA 438 (641)
T ss_pred CCCcccccCccHHHHHHHHHHHHHCCCEEEEEehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998898889999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
++|.+||++|++|+|+.|++.++++|++..++|+|||++|+..+...+|.. .+.+++||+.++++|.|++||++|+++
T Consensus 439 ~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~gk~~vlr~G~ditIva~G~~v 516 (641)
T PRK12571 439 FLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGVEIPAE--GTILGIGKGRVPREGPDVAILSVGAHL 516 (641)
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCcCCccccCCC--CccccCceeEEEecCCCEEEEEecHHH
Confidence 999999999999999999999999998655799999999986433223322 245788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeec
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~ 479 (525)
..|++|++.|+++||+++|||+++|+|||++++.++.++. +++++||+. .||||++|++.+.++++...+.++.++|+
T Consensus 517 ~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~ 595 (641)
T PRK12571 517 HECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGL 595 (641)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEec
Confidence 9999999999999999999999999999999998877766 567777775 79999999999999876544678999999
Q ss_pred CCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhccccc
Q 009809 480 PDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 517 (525)
Q Consensus 480 ~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~ 517 (525)
+|.|+++|+.+++++++|++++.|+++|+++++..+++
T Consensus 596 ~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l~~~~~~ 633 (641)
T PRK12571 596 PDRFIDHASREEMYAEAGLTAPDIAAAVTGALARLSGV 633 (641)
T ss_pred CCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999998766554
No 6
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=7.2e-88 Score=725.86 Aligned_cols=444 Identities=83% Similarity=1.292 Sum_probs=404.0
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
||+|+++++.+++|||++|||+++||++|||||.|++.+.|+++|+|+|++++.||.++||.+++++.++++|.++++++
T Consensus 189 mA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~ 268 (641)
T PLN02234 189 MAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNC 268 (641)
T ss_pred HHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccc
Confidence 68899999999999999999999999999999999988899999999999999998889999999999999999999988
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
+|.. + .. ..+|++|||.|++++||||+++|.++|++++....++|++|
T Consensus 269 ~~~~--~--------------~~----------------~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI 316 (641)
T PLN02234 269 GMIR--E--------------TS----------------STLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLI 316 (641)
T ss_pred cccc--C--------------CH----------------HHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 7721 0 00 23599999999999999999999999999987433589999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
|++|+||+|++++|+++.+||+..+|++++|++..+.....+|+++|+++|.+++++||+++++++|++++++++.|+++
T Consensus 317 ~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~ 396 (641)
T PLN02234 317 HVVTEKGRGYPYAERADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESR 396 (641)
T ss_pred EEEEecCCCcchhhcCCcccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHH
Confidence 99999999999999878899999999999987765433457999999999999999999999999999988889999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||||+||+|++|+++|+|+|+.|+|||+++|++|++|++|||++++|++++||+++++++|+.|.+|+|||+.+|++
T Consensus 397 fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia 476 (641)
T PLN02234 397 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVT 476 (641)
T ss_pred ccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
++|.+|||+|++|+|+.|++.++++|+...++|++||++|.......+|+....+.+++|+++++++|.|++||++|+++
T Consensus 477 ~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v 556 (641)
T PLN02234 477 FMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAV 556 (641)
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccccCceEEEEEeCCCEEEEEecHHH
Confidence 99999999999999999999999998766678999999998753333333222346789999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEE
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRP 476 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ 476 (525)
+.|++|++.|+++||+++|||+++++|||++.+.++.++++.+||+|+|..||+|++|++.+.++++++.+.+++|
T Consensus 557 ~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~~~~~~~ 632 (641)
T PLN02234 557 QRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKVYR 632 (641)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCCCCcHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999999999999889999999999999998765556654
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.6e-85 Score=710.70 Aligned_cols=454 Identities=32% Similarity=0.544 Sum_probs=399.8
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
||+|.++++.+++|||++|||++++|++|||||+|+.|++|++|||+||++++ ++ +++.++..+..++.++
T Consensus 125 ~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si------~~---~~~~~~~~l~~~~~~~ 195 (581)
T PRK12315 125 LAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSI------AE---NHGGLYKNLKELRDTN 195 (581)
T ss_pred HHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcC------CC---CCchhhhhhhhhhhcc
Confidence 57888999999999999999999999999999999999999999999999762 33 2333333332221111
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
. .+...+|++|||++++++||||++++.++++++++ .++|++|
T Consensus 196 ~-----------------------------------~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i 238 (581)
T PRK12315 196 G-----------------------------------QSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVL 238 (581)
T ss_pred c-----------------------------------ccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 01123589999999977799999999999999998 6899999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
+++|.||+|++++++++.+||+..+|+..+++..++. ...+|+++|+++|.+++++||+++++++|+++++++..|.++
T Consensus 239 ~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~ 317 (581)
T PRK12315 239 HIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPA-SGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKK 317 (581)
T ss_pred EEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCC-CCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHh
Confidence 9999999999877778889999888988777543321 256899999999999999999999999999999999999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||+|+||+|++|+++|+|+|+.|++||+.+|++|++|++||+++++|++++||++++++.|+.+ +|+|||+++|++
T Consensus 318 fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia 396 (581)
T PRK12315 318 YPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIP 396 (581)
T ss_pred ccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988766 999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
++|.+||++|++|+|+.|+..++++|+...++|+|||++|+...... .. ...+..+++.++++|.|++||++|+++
T Consensus 397 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~--~~--~~~~~~~k~~v~~~g~dvtiia~G~~v 472 (581)
T PRK12315 397 MISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGP--TV--DTDYSTLKYEVTKAGEKVAILALGDFY 472 (581)
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCC--CC--ccCcccceEEEEecCCCEEEEEEchHH
Confidence 99999999999999999999999999865578999999998743221 11 123345688899999999999999999
Q ss_pred HHHHHHHHHHHhC-CCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEee
Q 009809 401 QSCLAASALLESN-GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLV 478 (525)
Q Consensus 401 ~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig 478 (525)
+.|++|++.|+++ ||+++|||++|++|||++.+.++.++++.+||+|+|+ .||||++|++++.+++ .++.++|
T Consensus 473 ~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~g 547 (581)
T PRK12315 473 ELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYG 547 (581)
T ss_pred HHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEec
Confidence 9999999999999 9999999999999999999999888889999999998 6999999999998763 4789999
Q ss_pred cCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 479 LPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 479 ~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
++|.|+.+|+.+++++++||+++.|+++|++++
T Consensus 548 i~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 548 AKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred CCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999875
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-80 Score=677.40 Aligned_cols=449 Identities=59% Similarity=0.936 Sum_probs=394.0
Q ss_pred Cccccccc-CCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 1 MAVGRDLK-GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 1 ~A~a~~l~-~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
+|+|.+++ +++++|||++|||+++||++||||++|+++++|+++|++||+++ +++.... ....+.
T Consensus 129 ~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~------i~~~~~~---~~~~~~----- 194 (580)
T PRK05444 129 MAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMS------ISPNVGA---LSNYLA----- 194 (580)
T ss_pred HHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCc------CCCcchh---hhhhhc-----
Confidence 46677777 58899999999999999999999999999999999999999865 2332221 100000
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
..+. ..+|++|||+++.++||||++++.++++++++ .++|++
T Consensus 195 --------------------~~~~----------------~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~l 236 (580)
T PRK05444 195 --------------------RLRS----------------STLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVL 236 (580)
T ss_pred --------------------cccH----------------HHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEE
Confidence 0000 13589999999977899999999999999988 679999
Q ss_pred EEEEccCCCCchhhhhccccccCCCCCCCCCCcccCC-CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHH
Q 009809 160 IHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKS-SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFL 238 (525)
Q Consensus 160 i~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~ 238 (525)
|+++|+||+|++++++++.+||+.++|+.+.++...+ .....+|+++|+++|.+++++||+++++++|+.++.++..|+
T Consensus 237 I~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~ 316 (580)
T PRK05444 237 LHVVTKKGKGYAPAEADPIKYHGVGKFDPETGEQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFS 316 (580)
T ss_pred EEEEecCCcCCChhhcCccccCCCCCCCcccCCccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHH
Confidence 9999999999998887777899998888766543322 112368999999999999999999999999998777888899
Q ss_pred HhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhh
Q 009809 239 RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFD 318 (525)
Q Consensus 239 ~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d 318 (525)
++||+||+|+||+|++|+++|+|+|+.|++||+++|++|+.|++||+++++|++++||+++++++|+.|.+|+|||+++|
T Consensus 317 ~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~ed 396 (580)
T PRK05444 317 KRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFD 396 (580)
T ss_pred HHhhhhccCCChHHHHHHHHHHHHHHCCCeeEEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887889999999999
Q ss_pred hhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEech
Q 009809 319 VTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGT 398 (525)
Q Consensus 319 ~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~ 398 (525)
++++|.+||++|++|+|++|++.++++|++..++|+|||++|...+....+ ..+.+++|+++++++|+|++||++|+
T Consensus 397 ia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~---~~~~~~~Gk~~vl~~G~dvtIia~G~ 473 (580)
T PRK05444 397 LSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGVELP---ELEPLPIGKGEVLREGEDVAILAFGT 473 (580)
T ss_pred HHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCCC---CcccccCCceEEEEcCCCEEEEEccH
Confidence 999999999999999999999999999986558999999999875332212 13567899999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEe
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPL 477 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~i 477 (525)
+++.|++|++.|+ +++||+++|++|||+++|.+++++++++|++|+|. .|||+++|++++.++++ +.|+.++
T Consensus 474 ~v~~al~Aa~~L~----~~~VId~~~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~i 546 (580)
T PRK05444 474 MLAEALKAAERLA----SATVVDARFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNL 546 (580)
T ss_pred HHHHHHHHHHHhC----CCEEEEeCcCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEE
Confidence 9999999999985 89999999999999999999999999999999998 59999999999998865 4689999
Q ss_pred ecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 478 VLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 478 g~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
|++|.|+++|+.+++++++|+++++|+++|++++
T Consensus 547 g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 580 (580)
T PRK05444 547 GLPDEFIDHGSREELLAELGLDAEGIARRILELL 580 (580)
T ss_pred ecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHhhC
Confidence 9999999999999999999999999999998753
No 9
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.2e-73 Score=624.80 Aligned_cols=438 Identities=19% Similarity=0.248 Sum_probs=357.4
Q ss_pred CcccccccCC----------CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhh
Q 009809 1 MAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGAL 69 (525)
Q Consensus 1 ~A~a~~l~~~----------~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~ 69 (525)
||+|.++.+. +++|||++|||+++||++|||+|+|++|+|| |++|++||+++ +|+.+..+ +
T Consensus 126 ~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~------i~~~~~~~--~ 197 (663)
T PRK12753 126 LAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGIS------IDGETEGW--F 197 (663)
T ss_pred HHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCc------CCCChhhh--c
Confidence 4677776642 7899999999999999999999999999986 78899999876 45554421 1
Q ss_pred hHHHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHh
Q 009809 70 SSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEV 149 (525)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a 149 (525)
.+++ ..+|++|||+++.++||||+++|++|++++
T Consensus 198 ------------------------------~~~~----------------~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a 231 (663)
T PRK12753 198 ------------------------------TDDT----------------AKRFEAYHWHVIHEIDGHDPQAIKEAILEA 231 (663)
T ss_pred ------------------------------ChhH----------------HHHHHHcCCeEEceeCCCCHHHHHHHHHHH
Confidence 0122 124899999999668999999999999999
Q ss_pred hhcCCCCCEEEEEEccCCCCchhhhhccccccCCC------------------CCCCC-----------CCcc-------
Q 009809 150 KNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------------------KFDPA-----------TGKQ------- 193 (525)
Q Consensus 150 ~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~------------------~~~~~-----------~~~~------- 193 (525)
++. .++|++|+++|+||+|+++++ +..++|+.+ +|... .++.
T Consensus 232 ~~~-~~~P~~I~~~T~kG~G~~~~e-~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~ 309 (663)
T PRK12753 232 QSV-KDKPSLIICRTIIGFGSPNKA-GKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNE 309 (663)
T ss_pred HHC-CCCeEEEEEEEeecCCCCccc-CCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHH
Confidence 863 478999999999999999875 567899853 24331 1110
Q ss_pred -----------------------cCC---------------CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-
Q 009809 194 -----------------------FKS---------------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL- 234 (525)
Q Consensus 194 -----------------------~~~---------------~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l- 234 (525)
.++ ..+...+++++++.|.++++.+|+++++++|+..|+.+
T Consensus 310 ~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~ 389 (663)
T PRK12753 310 KFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTI 389 (663)
T ss_pred HHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcc
Confidence 000 11244677889999999999999999999999888766
Q ss_pred ----HHHHHhCCCCeeeccchHHHHHHHHHHHhc-CCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCC
Q 009809 235 ----NLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGA 308 (525)
Q Consensus 235 ----~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~-~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~ 308 (525)
..|.++||+||+|+||+||+|+++|+|+|+ .|++||++||++|++|++|||++ .|++++||++++++.|+ .|+
T Consensus 390 ~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~ 468 (663)
T PRK12753 390 WSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGE 468 (663)
T ss_pred cccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCC
Confidence 789999999999999999999999999999 78999999999999999999986 59999999999999998 799
Q ss_pred CCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCC-CCccccCceEEEee
Q 009809 309 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE 387 (525)
Q Consensus 309 ~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~-~~~~~~g~~~~l~~ 387 (525)
+|+|||+++|++++|.+||++|++|+|++|+..++..+++..++|+|||++|+..+.. ..... ...+..|+ +++++
T Consensus 469 DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~~--~~~~~~~~~~~~G~-~vl~~ 545 (663)
T PRK12753 469 DGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQ--ERTPEQVKNIARGG-YILKD 545 (663)
T ss_pred CCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCC--CCcccchhhccCCc-EEEec
Confidence 9999999999999999999999999999999999999987568999999999874322 11110 12244444 88887
Q ss_pred CC---cEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHH--HH-Hhcc-CCeEEEEcCCCCCCHHHHHHH
Q 009809 388 GE---RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALI--RS-LAKS-HEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 388 g~---dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i--~~-~~~~-~~~vvvvE~~~~gglg~~v~~ 460 (525)
+. |++||++|+++.+|++|++.|+++||+++||+++|++|||.+.+ ++ ++.. ....|++|+|...+|. +
T Consensus 546 ~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~----~ 621 (663)
T PRK12753 546 SGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWY----K 621 (663)
T ss_pred cCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccChHHHHH----H
Confidence 53 99999999999999999999999999999999999999999876 22 2222 2245899998432222 2
Q ss_pred HHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 461 FLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 461 ~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
+. +.+..++|+ |.|+.||+.++|+++|||+++.|++++++++
T Consensus 622 ~~--------~~~~~~iGv-d~Fg~sg~~~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 622 YV--------GLKGAIIGM-TGFGESAPADKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred Hc--------CCCCeEEEe-CCCcCcCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 11 346678998 7999999999999999999999999998763
No 10
>PLN02790 transketolase
Probab=100.00 E-value=1.1e-71 Score=612.20 Aligned_cols=437 Identities=22% Similarity=0.328 Sum_probs=359.6
Q ss_pred Ccccccc-----cCC-----CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhh
Q 009809 1 MAVGRDL-----KGR-----KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGAL 69 (525)
Q Consensus 1 ~A~a~~l-----~~~-----~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~ 69 (525)
||+|.++ +++ +++|||++|||+++||++|||+|+|+.|+|| +++|++||+++ +++++... .
T Consensus 117 ~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~------i~~~~~~~--~ 188 (654)
T PLN02790 117 LALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHIS------IDGDTEIA--F 188 (654)
T ss_pred HHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCcc------ccCCcccc--c
Confidence 4666664 343 7899999999999999999999999999986 88899999876 34443310 0
Q ss_pred hHHHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCC-CCHHHHHHHHHH
Q 009809 70 SSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEE 148 (525)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG-~d~~~l~~al~~ 148 (525)
.+++. .+|++|||+++.+.+| ||+++|++|+++
T Consensus 189 ------------------------------~~~~~----------------~~f~a~G~~~~~vdgg~hd~~~l~~a~~~ 222 (654)
T PLN02790 189 ------------------------------TEDVD----------------KRYEALGWHTIWVKNGNTDYDEIRAAIKE 222 (654)
T ss_pred ------------------------------chhHH----------------HHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence 11221 2489999999964455 899999999999
Q ss_pred hhhcCCCCCEEEEEEccCCCCchhhhhccccccCCC------------------CCCCCCCc------------cc----
Q 009809 149 VKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------------------KFDPATGK------------QF---- 194 (525)
Q Consensus 149 a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~------------------~~~~~~~~------------~~---- 194 (525)
+++. .++|++|+++|+||+|+++. +++.+||+.+ +|+..++. ..
T Consensus 223 a~~~-~~~P~lI~~~T~kG~G~~~~-e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w 300 (654)
T PLN02790 223 AKAV-TDKPTLIKVTTTIGYGSPNK-ANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEW 300 (654)
T ss_pred HHhc-CCCeEEEEEEEeecCCCccc-cCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHH
Confidence 9863 47899999999999999874 4667899876 45433110 00
Q ss_pred ----------C---------------------------CCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----
Q 009809 195 ----------K---------------------------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG---- 233 (525)
Q Consensus 195 ----------~---------------------------~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~---- 233 (525)
. ...+...+|+++++.|..+.+.+|+++..++|+..|+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~ 380 (654)
T PLN02790 301 NAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLK 380 (654)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccc
Confidence 0 00112467888899999999999999999999987754
Q ss_pred -hHHHHHh-CCCCeeeccchHHHHHHHHHHHhcC--CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCC
Q 009809 234 -LNLFLRR-FPTRCFDVGIAEQHAVTFAAGLACE--GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGA 308 (525)
Q Consensus 234 -l~~~~~~-~p~r~~~~gIaE~~~~~~a~G~A~~--G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~ 308 (525)
+..|+++ +|+||||+||+||+|+++|+|+|++ |++||++||.+|+.++.+|++. .|++++||++++++.|+ .|+
T Consensus 381 ~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~tf~~F~~~~~~~ir~-~al~~lpV~~v~thdg~~~G~ 459 (654)
T PLN02790 381 DFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCATFFVFTDYMRAAMRL-SALSEAGVIYVMTHDSIGLGE 459 (654)
T ss_pred cchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEecHHHHHHHHHHHHH-HHhcCCCeEEEEECCceeecC
Confidence 6789888 5999999999999999999999996 6999999999999999999755 59999999999988777 799
Q ss_pred CCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeC
Q 009809 309 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG 388 (525)
Q Consensus 309 ~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g 388 (525)
+|+|||+++|++++|.|||++|++|+|++|+..++++++...++|+|||++|+..+.. +.. ....+..|+ ++++++
T Consensus 460 DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~--~~~-~~~~~~~G~-~vl~~~ 535 (654)
T PLN02790 460 DGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNL--PGT-SIEGVEKGG-YVISDN 535 (654)
T ss_pred CCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCC--CCC-cccccccCc-EEEEeC
Confidence 9999999999999999999999999999999999999987667999999999874322 111 123466776 667774
Q ss_pred -----CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHH---HHh-ccCCeEEEEcCCCCCCHHHHHH
Q 009809 389 -----ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIR---SLA-KSHEVLITVEEGSIGGFGSHVV 459 (525)
Q Consensus 389 -----~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~---~~~-~~~~~vvvvE~~~~gglg~~v~ 459 (525)
+|++||++|+++.+|++|++.|+++||+++||+++|++|||.+.+. +++ ++++.+|++|++..+||++
T Consensus 536 ~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~--- 612 (654)
T PLN02790 536 SSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEK--- 612 (654)
T ss_pred CCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHH---
Confidence 7999999999999999999999999999999999999999998744 666 6677899999998888863
Q ss_pred HHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 460 QFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 460 ~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
++ ..+..++|+ |.|+.+|+.+++++++||+++.|+++|++++
T Consensus 613 -~~--------~~~~~~igv-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 613 -YV--------GSKGKVIGV-DRFGASAPAGILYKEFGFTVENVVAAAKSLL 654 (654)
T ss_pred -hc--------CCCceEEEe-CCCcCcCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 11 234467898 9999999999999999999999999998764
No 11
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-72 Score=573.95 Aligned_cols=450 Identities=37% Similarity=0.544 Sum_probs=379.5
Q ss_pred CcccccccCC-CCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 1 MAVGRDLKGR-KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 1 ~A~a~~l~~~-~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
||++.++.+. +++|||++|||+++||++|||+++|++|+|+.+++++||+..++++.+-.|...++...
T Consensus 130 mA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~---------- 199 (632)
T KOG0523|consen 130 MAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQL---------- 199 (632)
T ss_pred HHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHH----------
Confidence 6788888887 99999999999999999999999999999888888888877666655555554443221
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
.+++|||+.. .+||+|++++.+++.+|+.. .++|+.
T Consensus 200 ------------------------------------------r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~ 235 (632)
T KOG0523|consen 200 ------------------------------------------RFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTA 235 (632)
T ss_pred ------------------------------------------HHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCcee
Confidence 3899999999 89999999999999999853 578999
Q ss_pred EEEEccCCCCchhhhhccccccCCCC-------------CCC-------CCCc-------c-------------------
Q 009809 160 IHVVTEKGRGYPYAEKAADKYHGVAK-------------FDP-------ATGK-------Q------------------- 193 (525)
Q Consensus 160 i~v~t~kg~g~~~~~~~~~~~h~~~~-------------~~~-------~~~~-------~------------------- 193 (525)
|.++|.+|+|....+ +..+||.+- | | +++. +
T Consensus 236 i~~~t~~g~G~~~ig--~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~p~ 312 (632)
T KOG0523|consen 236 IKATTFIGRGSPYIG--SESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVEDARAISVRIPKIWEKSLPT 312 (632)
T ss_pred eeeeeeeecCccccc--cccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcccccccccccCcCccccccCCc
Confidence 999999999998754 678999871 2 1 0000 0
Q ss_pred cCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCCC-eEEEe
Q 009809 194 FKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGL-KPFCA 272 (525)
Q Consensus 194 ~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~-~pi~~ 272 (525)
.++..+...+++++.++|.++.+.+|+++.+++|+..|+.++-|.++||+|||++||+||+|+++|+|+|..|. +||+.
T Consensus 313 yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~ 392 (632)
T KOG0523|consen 313 YKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMVGIANGIACRGRTIPFCG 392 (632)
T ss_pred cccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhHHhhhchhcCCCccchhH
Confidence 00112347899999999999999999999999999999888888899999999999999999999999999998 99999
Q ss_pred echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCC
Q 009809 273 IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 351 (525)
Q Consensus 273 t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~ 351 (525)
||+.|++|++||+++ .+..+.++++++++.|+ .|+||||||..||+++||.+||++|+.|+|..|+..++..|++..+
T Consensus 393 tf~~F~trA~dqvr~-~a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~Aa~~~~ 471 (632)
T KOG0523|consen 393 TFAAFFTRAFDQVRM-GALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVATAANTKG 471 (632)
T ss_pred HHHHHHHHhhhheee-hhhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHHHHhcCC
Confidence 999999999999765 66788999999998887 7999999999999999999999999999999999999999988777
Q ss_pred CcEEEEecCCCCCCcccCCCCCCCccccCceE-EEeeCC-cEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCc
Q 009809 352 RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIEGE-RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLD 429 (525)
Q Consensus 352 ~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~-~l~~g~-dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d 429 (525)
.|.+++++|++.+.. .....+++||+. +++++. ||+||++|+++++|++|++.|+++||+++|+|+++++|||
T Consensus 472 ~p~i~~~~r~~~~~~-----~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD 546 (632)
T KOG0523|consen 472 TPSIRTLSRQNLPIY-----NNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLD 546 (632)
T ss_pred CeeEEEecCcccccc-----CCCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcCceEEEecccceeecc
Confidence 899999999874432 223457889885 777776 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCC-eEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHH
Q 009809 430 HALIRSLAKSHE-VLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 507 (525)
Q Consensus 430 ~~~i~~~~~~~~-~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i 507 (525)
...|+++.+.++ ++.|+|+|+ .||.+..+....... . ...+..++ .|+|+.+|++.++|+.||++++.|++++
T Consensus 547 ~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~---~-~~~~~~~~-~~~~~~sG~p~ell~~fGit~~~Ia~~a 621 (632)
T KOG0523|consen 547 VALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY---P-GILVPSLG-VDTFGRSGPPPELLKMFGITARHIAAAA 621 (632)
T ss_pred hHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc---C-Cccceeec-cccCCcCCCCHHHHHHhCCCHHHHHHHH
Confidence 999999998875 555566666 356665554433321 1 12345677 5899999999999999999999999999
Q ss_pred HHHhhcccccc
Q 009809 508 FNILGQTREAL 518 (525)
Q Consensus 508 ~~~l~~~~~~~ 518 (525)
+.++.+.++++
T Consensus 622 ~~~~~~~~~~~ 632 (632)
T KOG0523|consen 622 LSLIGKYREAL 632 (632)
T ss_pred HHHHhhhccCC
Confidence 99999887763
No 12
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.3e-71 Score=611.49 Aligned_cols=436 Identities=22% Similarity=0.331 Sum_probs=357.7
Q ss_pred CcccccccC----------CCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhh
Q 009809 1 MAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGAL 69 (525)
Q Consensus 1 ~A~a~~l~~----------~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~ 69 (525)
||+|.|+.+ .+++|||++|||+++||.+|||+++|+.|+|| |++|+++|+++ +|+.+..+- .
T Consensus 122 ~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~------i~~~~~~~~-~ 194 (653)
T TIGR00232 122 MAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRIS------IDGAVDGSF-T 194 (653)
T ss_pred HHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCee------ecccccccc-C
Confidence 466666652 47899999999999999999999999999988 77788888865 455443220 0
Q ss_pred hHHHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeecc-CCCCHHHHHHHHHH
Q 009809 70 SSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPV-DGHNVDDLVAILEE 148 (525)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-dG~d~~~l~~al~~ 148 (525)
+++ ...|++|||+++ .+ ||||+.++.+|+++
T Consensus 195 -------------------------------~~~----------------~~~~~a~Gw~~~-~v~DG~D~~ai~~A~~~ 226 (653)
T TIGR00232 195 -------------------------------EDV----------------AKRFEAYGWEVL-EVEDGHDLAAIDAAIEE 226 (653)
T ss_pred -------------------------------ccH----------------HHHHHhcCCcEE-EeCCCCCHHHHHHHHHH
Confidence 111 124899999999 56 99999999999999
Q ss_pred hhhcCCCCCEEEEEEccCCCCchhhhhccccccCCC------------------CCCCC-------------CCcc----
Q 009809 149 VKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------------------KFDPA-------------TGKQ---- 193 (525)
Q Consensus 149 a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~------------------~~~~~-------------~~~~---- 193 (525)
+++. .++|++|+++|+||+|+++.++ ...+|+.+ +|... .+++
T Consensus 227 a~~~-~~~P~~I~~~T~~g~G~~~~e~-~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~ 304 (653)
T TIGR00232 227 AKAS-KDKPTLIEVTTTIGFGSPNKAG-THGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQE 304 (653)
T ss_pred HHhC-CCCCEEEEEEeeecccCcccCC-CCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHH
Confidence 9872 2489999999999999987664 45789875 12100 0100
Q ss_pred --------------------------cC-----------CCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHH
Q 009809 194 --------------------------FK-----------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNL 236 (525)
Q Consensus 194 --------------------------~~-----------~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~ 236 (525)
++ ...+..+++++++++|.++++.+|+++++++|+.+|+.+..
T Consensus 305 w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~ 384 (653)
T TIGR00232 305 WNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKW 384 (653)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCccc
Confidence 00 01123467889999999999999999999999988877654
Q ss_pred -----HHHhCCCCeeeccchHHHHHHHHHHHhc-CCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCC
Q 009809 237 -----FLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGAD 309 (525)
Q Consensus 237 -----~~~~~p~r~~~~gIaE~~~~~~a~G~A~-~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~ 309 (525)
|.++||+||+|+||+|++|+++|+|+|+ .|++||++||++|++|+++|++.. |++++||++++++.|+ .|++
T Consensus 385 ~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~~F~~r~~~~ir~~-a~~~lpV~~v~th~g~~~G~d 463 (653)
T TIGR00232 385 KGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYARPAIRLA-ALMKLPVIYVYTHDSIGVGED 463 (653)
T ss_pred ccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEEEEhHHHHHHHHHHHHHH-HhcCCCEEEEEeCCccCCCCC
Confidence 8899999999999999999999999999 679999999999999999997655 9999999999998887 7899
Q ss_pred CCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEE--ee
Q 009809 310 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL--IE 387 (525)
Q Consensus 310 G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l--~~ 387 (525)
|+|||+++|++++|.+||++|++|+|+.|+..++++++...++|+|||++|++.+.. .+. ....+..|+ +++ ++
T Consensus 464 G~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~--~~~-~~~~~~~G~-~vl~~~~ 539 (653)
T TIGR00232 464 GPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQL--EES-SLEKVLKGG-YVLKDSK 539 (653)
T ss_pred CcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCC--Ccc-cccccCCCc-EEEEecC
Confidence 999999999999999999999999999999999999986678999999999874321 111 113345565 777 66
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHH---HHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHH
Q 009809 388 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA---LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 388 g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~---~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~ 464 (525)
|+|++||++|+++..|++|++.|+++||+++||+++|++|||.+ .+.+++++++.+|++|+|+.+||. ..+
T Consensus 540 g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~~g~~----~~~-- 613 (653)
T TIGR00232 540 GPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAADEWY----KYA-- 613 (653)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccHhHHH----Hhc--
Confidence 89999999999999999999999999999999999999999664 488888888899999999876663 111
Q ss_pred cCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 465 DGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 465 ~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
+....++|+ |.|+.+|+.++|+++|||+++.|+++|++++
T Consensus 614 ------~~~~~~igv-d~fg~sg~~~~L~~~~Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 614 ------GLVGAILGM-DSFGESAPGDKLFEEFGFTVENVVAKAKKLL 653 (653)
T ss_pred ------CCcceEEEe-cCCcCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 111257898 9999999999999999999999999998764
No 13
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.3e-71 Score=612.11 Aligned_cols=434 Identities=22% Similarity=0.323 Sum_probs=357.4
Q ss_pred CcccccccCC----------CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhh
Q 009809 1 MAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGAL 69 (525)
Q Consensus 1 ~A~a~~l~~~----------~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~ 69 (525)
||+|.++.+. +++|||++|||+++||++|||+|+|+.|+|| +++||+||+++ +|+++... .
T Consensus 128 ~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~------i~~~~~~~--~ 199 (661)
T PTZ00089 128 LAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKIT------IDGNTDLS--F 199 (661)
T ss_pred HHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcc------cccCcccc--c
Confidence 4677777643 8899999999999999999999999999975 88999999876 45544321 0
Q ss_pred hHHHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCC-CHHHHHHHHHH
Q 009809 70 SSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEE 148 (525)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~-d~~~l~~al~~ 148 (525)
.++. ..+|++|||+++.++||| |+++|++|+++
T Consensus 200 ------------------------------~~~~----------------~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~ 233 (661)
T PTZ00089 200 ------------------------------TEDV----------------EKKYEAYGWHVIEVDNGNTDFDGLRKAIEE 233 (661)
T ss_pred ------------------------------CccH----------------HHHHHhcCCcEEEeCCCCCCHHHHHHHHHH
Confidence 0111 124899999999766999 99999999999
Q ss_pred hhhcCCCCCEEEEEEccCCCCchhhhhccccccCCC-------------------CCCCC--C----------Ccc----
Q 009809 149 VKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA-------------------KFDPA--T----------GKQ---- 193 (525)
Q Consensus 149 a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~-------------------~~~~~--~----------~~~---- 193 (525)
+++. .++|++|+++|+||+|+ +.+++.++|+.+ +|++. . +..
T Consensus 234 a~~~-~~~P~~I~~~T~kG~G~--~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 310 (661)
T PTZ00089 234 AKKS-KGKPKLIIVKTTIGYGS--SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEA 310 (661)
T ss_pred HHhc-CCCcEEEEEEeeecCCC--CcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHH
Confidence 9873 36899999999999995 345677899875 24432 0 000
Q ss_pred --------------------------cC-----------CCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch--
Q 009809 194 --------------------------FK-----------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-- 234 (525)
Q Consensus 194 --------------------------~~-----------~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-- 234 (525)
++ ...+..+++++++++|.++.+.+|+++..++|+..|+.+
T Consensus 311 w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~ 390 (661)
T PTZ00089 311 WKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRP 390 (661)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCC
Confidence 00 001134678899999999999999999999999877654
Q ss_pred ---HHHHHhCC-CCeeeccchHHHHHHHHHHHhc-CCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCC
Q 009809 235 ---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGA 308 (525)
Q Consensus 235 ---~~~~~~~p-~r~~~~gIaE~~~~~~a~G~A~-~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~ 308 (525)
..|++.|| +||+|+||+||+|+++|+|+|+ .|++||++||++|++|++||| ++.|++++||++++++.|+ .|+
T Consensus 391 ~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~ 469 (661)
T PTZ00089 391 KEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGE 469 (661)
T ss_pred cccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCC
Confidence 37888899 8999999999999999999999 789999999999999999996 5569999999999988887 799
Q ss_pred CCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeC
Q 009809 309 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG 388 (525)
Q Consensus 309 ~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g 388 (525)
+|+|||+++|++++|.|||++|++|+|+.|+..++++++...++|+|||++|+..+.. +. ....+..++.++++++
T Consensus 470 DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~--~~--~~~~~~~~g~~vl~~~ 545 (661)
T PTZ00089 470 DGPTHQPVETLALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPL--PG--SSIEGVLKGAYIVVDF 545 (661)
T ss_pred CCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCc--CC--CccccccCceEEEecc
Confidence 9999999999999999999999999999999999999986677999999999874332 11 1123345566889874
Q ss_pred ---CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHH---hc-cCCeEEEEcCCCCCCHHHHHHHH
Q 009809 389 ---ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSL---AK-SHEVLITVEEGSIGGFGSHVVQF 461 (525)
Q Consensus 389 ---~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~---~~-~~~~vvvvE~~~~gglg~~v~~~ 461 (525)
.|++||++|+++.+|++|++.|++ |++++||+++|++|||.+.+... +. +...+|++|++...||..
T Consensus 546 ~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----- 619 (661)
T PTZ00089 546 TNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----- 619 (661)
T ss_pred CCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh-----
Confidence 799999999999999999999999 99999999999999999876532 44 456789999998655531
Q ss_pred HHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 462 LAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 462 l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
. ...++|+++ |+.+|+.++|++++||+++.|+++|++++.+
T Consensus 620 ----~------~~~~igv~~-Fg~sg~~~~l~~~~Gl~~e~I~~~i~~~l~~ 660 (661)
T PTZ00089 620 ----Y------SHVHVGISG-FGASAPANALYKHFGFTVENVVEKARALAAR 660 (661)
T ss_pred ----c------CCeEEECCC-ccccCCHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 0 114789987 9999999999999999999999999988753
No 14
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=5.5e-71 Score=601.77 Aligned_cols=439 Identities=21% Similarity=0.286 Sum_probs=357.3
Q ss_pred CcccccccC----------CCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhh
Q 009809 1 MAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGAL 69 (525)
Q Consensus 1 ~A~a~~l~~----------~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~ 69 (525)
||+|.++.+ .+++|||++|||+++||.+|||+++|++|+|| |++|+++|+++ +||.+..+ .
T Consensus 126 ~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~------idg~~~~~--~ 197 (663)
T PRK12754 126 MAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGIS------IDGHVEGW--F 197 (663)
T ss_pred HHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCc------cCcchhhc--c
Confidence 467777665 47899999999999999999999999999998 77888888865 45554421 0
Q ss_pred hHHHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHh
Q 009809 70 SSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEV 149 (525)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a 149 (525)
.+++. ..|++|||+++.++||||+++|.+|++++
T Consensus 198 ------------------------------~~~~~----------------~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a 231 (663)
T PRK12754 198 ------------------------------TDDTA----------------MRFEAYGWHVIRGIDGHDADSIKRAVEEA 231 (663)
T ss_pred ------------------------------CccHH----------------HHHHhcCCeEEeeECCCCHHHHHHHHHHH
Confidence 01222 24899999999448999999999999999
Q ss_pred hhcCCCCCEEEEEEccCCCCchhhhhccccccCCCC------------------CCCC-----------CCcc-------
Q 009809 150 KNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK------------------FDPA-----------TGKQ------- 193 (525)
Q Consensus 150 ~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~~------------------~~~~-----------~~~~------- 193 (525)
+.. .++|++|+++|+||+|.++.+ +...+|+.+. |... .+++
T Consensus 232 ~~~-~~~Pt~I~~~T~~g~G~~~~e-~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~ 309 (663)
T PRK12754 232 RAV-TDKPSLLMCKTIIGFGSPNKA-GTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNE 309 (663)
T ss_pred Hhc-CCCCEEEEEEeeeccCccccC-CCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHH
Confidence 863 578999999999999998766 4468898751 1110 0100
Q ss_pred -----------------------cCC---------------CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--
Q 009809 194 -----------------------FKS---------------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-- 233 (525)
Q Consensus 194 -----------------------~~~---------------~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~-- 233 (525)
++. ..+...+|++++++|.++++.+|+++++++|+.+|+.
T Consensus 310 ~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~ 389 (663)
T PRK12754 310 KFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTL 389 (663)
T ss_pred HHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCcc
Confidence 000 0123467889999999999999999999999988765
Q ss_pred ---hHHHHHhCCCCeeeccchHHHHHHHHHHHhc-CCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCC
Q 009809 234 ---LNLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGA 308 (525)
Q Consensus 234 ---l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~-~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~ 308 (525)
...|.+.||+|||++||+||+|+++|+|+|+ .|++||+.||++|+.|+++||++. |++++||++++++.|+ .|+
T Consensus 390 ~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~ 468 (663)
T PRK12754 390 WSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGE 468 (663)
T ss_pred ccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCC
Confidence 4678889999999999999999999999999 678999999999999999999875 9999999999999998 799
Q ss_pred CCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeC
Q 009809 309 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG 388 (525)
Q Consensus 309 ~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g 388 (525)
+|+|||++||++++|.|||+.|+.|+|+.|+..+++.++...++|+|||++|++.+...... .....+..|+ ++++++
T Consensus 469 DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~~~-~~~~~~~~G~-~vl~~~ 546 (663)
T PRK12754 469 DGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTE-EQLANIARGG-YVLKDC 546 (663)
T ss_pred CCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCcc-chhhhcccCc-EEEEec
Confidence 99999999999999999999999999999999999999876679999999998744321000 0012344454 888876
Q ss_pred C---cEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHH---HHHHHhccC-CeEEEEcCCCCCCHHHHHHHH
Q 009809 389 E---RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQF 461 (525)
Q Consensus 389 ~---dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~---~i~~~~~~~-~~vvvvE~~~~gglg~~v~~~ 461 (525)
. |++||++|+++.+|++|++.|+++||+++||+++|++|||.+ +.+.++... ...|++|.....||.. +
T Consensus 547 ~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~----~ 622 (663)
T PRK12754 547 AGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYK----Y 622 (663)
T ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeecccccchhh----h
Confidence 4 999999999999999999999999999999999999999975 444444433 2458999987788873 3
Q ss_pred HHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 462 LAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 462 l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
+..++. .+|+ +.|+.||+.++|+++||++++.|++++++++
T Consensus 623 ~~~~~~--------~igi-~~FG~Sg~~~~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 623 VGLNGA--------IVGM-TTFGESAPAELLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred ccCCCC--------EEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 333331 2787 8899999999999999999999999998764
No 15
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=5.4e-70 Score=600.06 Aligned_cols=435 Identities=26% Similarity=0.366 Sum_probs=358.2
Q ss_pred cccccccCC----------CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhh
Q 009809 2 AVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALS 70 (525)
Q Consensus 2 A~a~~l~~~----------~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~ 70 (525)
|+|.++.+. +++|||++|||++++|++||||++|+++++| +++|++||++++ ++..... .
T Consensus 131 Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~------~~~~~~~--~- 201 (624)
T PRK05899 131 ALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISI------DGPTEGW--F- 201 (624)
T ss_pred HHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCcc------ccccccc--c-
Confidence 455565555 8999999999999999999999999999987 777787777652 2221110 0
Q ss_pred HHHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhh
Q 009809 71 SALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK 150 (525)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~ 150 (525)
.++...++++|||+++ .+||||+++|..++++++
T Consensus 202 ---------------------------------------------~~~~~~~~~a~G~~~~-~VdG~d~~~l~~al~~a~ 235 (624)
T PRK05899 202 ---------------------------------------------TEDVKKRFEAYGWHVI-EVDGHDVEAIDAAIEEAK 235 (624)
T ss_pred ---------------------------------------------cccHHHHhccCCCeEE-EECCCCHHHHHHHHHHHH
Confidence 0111345899999999 599999999999999998
Q ss_pred hcCCCCCEEEEEEccCCCCchhhhhccccccCCCCCCC-------CCC---ccc--C-------------CC--------
Q 009809 151 NTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP-------ATG---KQF--K-------------SS-------- 197 (525)
Q Consensus 151 ~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~~~~~-------~~~---~~~--~-------------~~-------- 197 (525)
+ .++|++|+++|.||+|+++++ +..+||+.++.+. +.+ +++ + +.
T Consensus 236 ~--~~~P~vI~v~t~kg~g~~~~e-~~~~~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (624)
T PRK05899 236 A--STKPTLIIAKTIIGKGAPNKE-GTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNE 312 (624)
T ss_pred h--cCCCEEEEEEeEeccCCcccc-CCCcccCCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHH
Confidence 7 579999999999999999877 5567998653210 000 000 0 00
Q ss_pred ---CCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHH------HhCCCCeeeccchHHHHHHHHHHHhcCC-C
Q 009809 198 ---ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFL------RRFPTRCFDVGIAEQHAVTFAAGLACEG-L 267 (525)
Q Consensus 198 ---~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~------~~~p~r~~~~gIaE~~~~~~a~G~A~~G-~ 267 (525)
....+++++++++|.+++++||+++++++|+++++.+..|. ++||+||+|+||+|++|+++|+|+|+.| +
T Consensus 313 ~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~ 392 (624)
T PRK05899 313 KFAGEKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGF 392 (624)
T ss_pred hhcccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCC
Confidence 12235589999999999999999999999998877776665 6889999999999999999999999999 9
Q ss_pred eEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 009809 268 KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 346 (525)
Q Consensus 268 ~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a 346 (525)
+||++||++|+.|+++|+++. +++++||+++++++|+ .|.+|+|||+.+|++++|.+||++|++|+|++|++.+++++
T Consensus 393 ~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a 471 (624)
T PRK05899 393 IPFGGTFLVFSDYARNAIRLA-ALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYA 471 (624)
T ss_pred eEEEEEcHHHHHHHHHHHHHH-HhcCCCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHH
Confidence 999999999999999999875 8999999999999998 67899999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccc
Q 009809 347 AAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCK 426 (525)
Q Consensus 347 ~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~ 426 (525)
++..++|+|||++|...+. +.+......++.|+ +++++|.|++||++|+++++|++|++.|+++||+++||+++||+
T Consensus 472 ~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sik 548 (624)
T PRK05899 472 LERKDGPSALVLTRQNLPV--LERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTE 548 (624)
T ss_pred HHcCCCCEEEEEeCCCCCC--cCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcc
Confidence 8755899999999876432 11110124566776 88899999999999999999999999999999999999999999
Q ss_pred cCcHH---HHHHHh-ccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHH
Q 009809 427 PLDHA---LIRSLA-KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 502 (525)
Q Consensus 427 P~d~~---~i~~~~-~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~ 502 (525)
|||.+ .+...+ +....+|++|++..+||. .++ +.++.++|++| |+.+|+.++|++++||+++.
T Consensus 549 PlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~----~~~--------~~~~~~iGv~~-f~~~g~~~~l~~~~gl~~~~ 615 (624)
T PRK05899 549 LFDEQDAAYKESVLPAAVTARVAVEAGVADGWY----KYV--------GLDGKVLGIDT-FGASAPADELFKEFGFTVEN 615 (624)
T ss_pred hhccCcHHHHhccccccccceEEEccCCccchh----hhc--------CCCceEEECCC-CCCCCCHHHHHHHhCCCHHH
Confidence 99998 355555 445678888887777772 222 34678999999 99999999999999999999
Q ss_pred HHHHHHHHh
Q 009809 503 IAATVFNIL 511 (525)
Q Consensus 503 I~~~i~~~l 511 (525)
|+++|++++
T Consensus 616 I~~~i~~~~ 624 (624)
T PRK05899 616 IVAAAKELL 624 (624)
T ss_pred HHHHHHHhC
Confidence 999998753
No 16
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-69 Score=514.70 Aligned_cols=304 Identities=33% Similarity=0.562 Sum_probs=288.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHH
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ 279 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~ 279 (525)
..++++++++.|.++.++++++|++++|+.+|+.+..|.++||+||+|+||+||+|+|+|+|+|++|++||+++|++|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEE
Q 009809 280 -RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 357 (525)
Q Consensus 280 -~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~ 357 (525)
|+||||++++||.++||.++++++|+ .|++|+|||..||+++||.+||+.|++|+|+.+++.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 6889999999999999999999999999999999999998864 78999999
Q ss_pred ecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh
Q 009809 358 YPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA 437 (525)
Q Consensus 358 ~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~ 437 (525)
+.|...+.. +. ...+.|++||++++++|.|++||++|.|+..+++|++.|+++||+++||++.||||+|++.|.+..
T Consensus 165 l~R~~~p~~-~~--~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A 241 (312)
T COG3958 165 LGRGKVPVV-VD--EGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA 241 (312)
T ss_pred ecCCCCCce-ec--CCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH
Confidence 999764422 22 225889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 438 KSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 438 ~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
++++.|||+|+|+ .||||+.|++.+++++ +.++.++|++|.|+.+|+..+|+++|||+++.|++++++++
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 9999999999998 7999999999999997 68899999999999999999999999999999999998764
No 17
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=8.9e-67 Score=573.19 Aligned_cols=492 Identities=19% Similarity=0.198 Sum_probs=381.0
Q ss_pred ccCCCCeEEEEEcccccccchhHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHH
Q 009809 7 LKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLREL 85 (525)
Q Consensus 7 l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~ 85 (525)
++..+++||||+|||+|+||++|||+.+|++++ .||+||+++|+++ +||.++.++.+.+.|++.+...+|+.+
T Consensus 220 ~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~------lDG~v~~~~~~~~~l~~~f~a~GW~Vi 293 (891)
T PRK09405 220 KDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQR------LDGPVRGNGKIIQELEGIFRGAGWNVI 293 (891)
T ss_pred ccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcc------cCCccccccccchhHHHHHhhCCCEEE
Confidence 356789999999999999999999999999997 5799999999987 799999877766677766666666654
Q ss_pred HH----HHhhhhccc-CCch------------HHHHHHH-HHHHhccccC--CccccccccC---ceEeeccCCCCHHHH
Q 009809 86 RE----VAKGVTKQI-GGPM------------HELAAKV-DEYARGMISG--SGSTLFEELG---LYYIGPVDGHNVDDL 142 (525)
Q Consensus 86 ~~----~~~~~~~~~-~~~~------------~~~~~~~-~~~~~~~~~~--~~~~~~~~~g---~~~~~~~dG~d~~~l 142 (525)
+- .++.+..+- +..+ +.+..+. ..++.+|+.+ ....+.+.+. +... ..+|||+.+|
T Consensus 294 ~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l-~~gGHD~~~i 372 (891)
T PRK09405 294 KVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWAL-NRGGHDPRKV 372 (891)
T ss_pred EEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHh-ccCCCCHHHH
Confidence 31 111111111 0001 1111111 1123333322 1112222222 1111 3579999999
Q ss_pred HHHHHHhhhcCCCCCEEEEEEccCCCCchhhhhccccccCCCC--------------------------CC-CCCCc---
Q 009809 143 VAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK--------------------------FD-PATGK--- 192 (525)
Q Consensus 143 ~~al~~a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~~--------------------------~~-~~~~~--- 192 (525)
++|++.|++. .++|++|.++|+||+|...+.++.+.+|+..+ |. |+.+.
T Consensus 373 ~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~ 451 (891)
T PRK09405 373 YAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEI 451 (891)
T ss_pred HHHHHHHHhC-CCCCEEEEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHH
Confidence 9999998863 47899999999999999444445567787421 10 11000
Q ss_pred ----------------------ccC-C------------CCCcccHHHHHHHHHHHHHhc---CCCEEEEecCCCCCcch
Q 009809 193 ----------------------QFK-S------------SARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGGGTGL 234 (525)
Q Consensus 193 ----------------------~~~-~------------~~~~~~~~~a~~~~l~~~~~~---d~~~v~~~~D~~~s~~l 234 (525)
++. | ..+.++++.||+++|.++++. +++||.+.+|+..++++
T Consensus 452 ~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~ 531 (891)
T PRK09405 452 KYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGM 531 (891)
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCc
Confidence 000 0 024568899999999999985 89999999999998877
Q ss_pred -------------------------HHHHHhCCCCeeeccchHHHHHH--HHHHHhcC----CCeEEEeechhh-HHHHH
Q 009809 235 -------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSF-MQRAY 282 (525)
Q Consensus 235 -------------------------~~~~~~~p~r~~~~gIaE~~~~~--~a~G~A~~----G~~pi~~t~~~F-~~~a~ 282 (525)
..|++.+|+||+|+||+|++|++ +|+|+|++ |++||+.+|++| .+|++
T Consensus 532 ~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~ 611 (891)
T PRK09405 532 EGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIG 611 (891)
T ss_pred chhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHH
Confidence 45788999999999999999999 99999998 789999999999 58999
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCC--cEEE
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDR--PSCF 356 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~--Pv~i 356 (525)
||+++.+++++.+|+++++++|. .+.+|.|||..+|.+++|.+||++||+|+|+.|+..+++.++. ...+ |.|+
T Consensus 612 Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYl 691 (891)
T PRK09405 612 DLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYI 691 (891)
T ss_pred HHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 99999999999999999999998 5889999999999999999999999999999999999999865 1233 6678
Q ss_pred EecCCCCCCcccCCCCCCCccccCce-EEEeeCC------cEEEEEechhHHHHHHHHHHHHh-CCCcEEEEeccccccC
Q 009809 357 RYPRGNGIGVELPPGNKGIPLEVGKG-RILIEGE------RVALLGYGTAVQSCLAASALLES-NGLRLTVADARFCKPL 428 (525)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~~~~~g~~-~~l~~g~------dv~iva~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~ 428 (525)
|+...+.. .|...+.+.+.++|+ |++++|. +++|+++|.++++|++|++.|++ +||+++||+++|++|+
T Consensus 692 rl~ne~~~---~~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpL 768 (891)
T PRK09405 692 TVMNENYH---QPAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNEL 768 (891)
T ss_pred EeCCCCCC---CCCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHh
Confidence 87632222 122122456789997 9999876 89999999999999999999998 6999999999999999
Q ss_pred cHHHHHHHh---------ccCCeEEEEcCCCCCCHH-------HHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHH
Q 009809 429 DHALIRSLA---------KSHEVLITVEEGSIGGFG-------SHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQ 492 (525)
Q Consensus 429 d~~~i~~~~---------~~~~~vvvvE~~~~gglg-------~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l 492 (525)
|.+.+.... ++++.|+++|++ .||++ +.|++.|.+.. +.++.++|+ |.|+.||+.++|
T Consensus 769 drd~i~~~~~~~l~~~~~~~~~~V~t~ee~-~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SGt~~~L 842 (891)
T PRK09405 769 ARDGQDVERWNMLHPTEEPRVPYVTQVLKG-AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSDTREAL 842 (891)
T ss_pred hHHHHHHHHHhhcCcccccccchhhhhhcc-cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCCCHHHH
Confidence 999987655 556678888887 57777 78888887753 578999998 999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhhccc
Q 009809 493 LAQAGLTPSHIAATVFNILGQTR 515 (525)
Q Consensus 493 ~~~~gl~~~~I~~~i~~~l~~~~ 515 (525)
+++|||+++.|++++++++.+..
T Consensus 843 ~~~fglda~~Iv~aal~~La~~g 865 (891)
T PRK09405 843 RRFFEVDAEYVVVAALKALADEG 865 (891)
T ss_pred HHHhCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999986543
No 18
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=3.2e-67 Score=576.55 Aligned_cols=489 Identities=20% Similarity=0.209 Sum_probs=381.7
Q ss_pred CCCCeEEEEEcccccccchhHHHHHhccccCC-CEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHH
Q 009809 9 GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELRE 87 (525)
Q Consensus 9 ~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l-~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (525)
..+++||||+|||+++||++|||+.+|++++| ||++|+++|+++ +||.+..++.+...+++.+.+.+|+.++-
T Consensus 216 ~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~q------lDG~t~~~~~~~e~l~~kf~a~GW~vi~v 289 (889)
T TIGR03186 216 TEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQR------LDGPVRGNGRIIDELESQFAGAGWNVIKV 289 (889)
T ss_pred CCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCc------cCCccccccccchHHHHHHHhCCCEEEEE
Confidence 34799999999999999999999999999985 799999999987 79998877776667777777777776542
Q ss_pred ----HHhhhhccc-CCch------------HHHHHHH-HHHHhccccC--CccccccccCc---eEeeccCCCCHHHHHH
Q 009809 88 ----VAKGVTKQI-GGPM------------HELAAKV-DEYARGMISG--SGSTLFEELGL---YYIGPVDGHNVDDLVA 144 (525)
Q Consensus 88 ----~~~~~~~~~-~~~~------------~~~~~~~-~~~~~~~~~~--~~~~~~~~~g~---~~~~~~dG~d~~~l~~ 144 (525)
.++.+..+- +..+ +.+..+. ..++.+|+.+ ....+.+.+.= ... .-+|||+.+|++
T Consensus 290 ~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l-~rgGHD~~~i~~ 368 (889)
T TIGR03186 290 LWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRL-RRGGHDARKLYA 368 (889)
T ss_pred eecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhh-cCCCCCHHHHHH
Confidence 222222221 1111 1111111 1123444433 22233333321 111 238999999999
Q ss_pred HHHHhhhcCCCCCEEEEEEccCCCCchhhhhccccccCCCC--------------------------C-CCCCC------
Q 009809 145 ILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK--------------------------F-DPATG------ 191 (525)
Q Consensus 145 al~~a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~~--------------------------~-~~~~~------ 191 (525)
|+++|++. .++||+|.++|+||+|+..++++.+.+|+..+ | .|..+
T Consensus 369 A~~~A~~~-~~~PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~ 447 (889)
T TIGR03186 369 AYDRAVRH-EGRPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRY 447 (889)
T ss_pred HHHHHHhC-CCCCEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHH
Confidence 99999863 46899999999999999776665567787432 2 11100
Q ss_pred ----------c----------c--cCC-----------CCCcccHHHHHHHHHHHHHh---cCCCEEEEecCCCCCcchH
Q 009809 192 ----------K----------Q--FKS-----------SARTQSYTTYFAEALIAEAE---VDKDVVAIHAAMGGGTGLN 235 (525)
Q Consensus 192 ----------~----------~--~~~-----------~~~~~~~~~a~~~~l~~~~~---~d~~~v~~~~D~~~s~~l~ 235 (525)
. + .+. ..+..+.+.||+++|..+++ ..++||.+.+|+..+++++
T Consensus 448 l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~ 527 (889)
T TIGR03186 448 LHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMA 527 (889)
T ss_pred HHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCch
Confidence 0 0 000 11446788999999777775 3568999999999998553
Q ss_pred -------------------------HHHHhCCCCeeeccchHHHHHH--HHHHHhcC----CCeEEEeechhhH-HHHHH
Q 009809 236 -------------------------LFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSFM-QRAYD 283 (525)
Q Consensus 236 -------------------------~~~~~~p~r~~~~gIaE~~~~~--~a~G~A~~----G~~pi~~t~~~F~-~~a~d 283 (525)
.|++.+|+||+|+||+|++|++ +|+|+|++ |++||+.+|++|. +|++|
T Consensus 528 ~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~D 607 (889)
T TIGR03186 528 NLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGD 607 (889)
T ss_pred hhhccccccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHH
Confidence 3567789999999999999999 99999998 8899999999996 89999
Q ss_pred HHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh----c-CCCcEEE
Q 009809 284 QVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----I-DDRPSCF 356 (525)
Q Consensus 284 qi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~----~-~~~Pv~i 356 (525)
|+++. |+++.++++++.++|+ .+.+|+|||+.+|++++|.+||++||.|+|+.|+..++++++. . .++|+||
T Consensus 608 qir~a-~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~Yl 686 (889)
T TIGR03186 608 LIWAA-ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL 686 (889)
T ss_pred HHHHH-hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 98776 9999999999999998 4889999999999999999999999999999999999998654 1 3579999
Q ss_pred EecCCCCCCcccCCCCCC-CccccC--ce-EEEe----eCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEecccccc
Q 009809 357 RYPRGNGIGVELPPGNKG-IPLEVG--KG-RILI----EGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKP 427 (525)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~-~~~~~g--~~-~~l~----~g~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P 427 (525)
|+.+.+.....+++. . ..+..| |+ |+++ +|.+++|+++|.++++|++|++.|+++ ||+++||+++|++|
T Consensus 687 Rl~r~~~~~p~~~~~--~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~Sikp 764 (889)
T TIGR03186 687 TVTNENYAQPSLPED--RLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTE 764 (889)
T ss_pred EeCCCCCCCCCcCCC--cccchhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCH
Confidence 999986432222221 1 223344 46 8888 467999999999999999999999987 99999999999999
Q ss_pred CcHHHHHHHhccCCeEEEEcCC---C-CCCHHH-------------HHHHHHHHcCCCCCCcceEEeecCCccCCCCChH
Q 009809 428 LDHALIRSLAKSHEVLITVEEG---S-IGGFGS-------------HVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPA 490 (525)
Q Consensus 428 ~d~~~i~~~~~~~~~vvvvE~~---~-~gglg~-------------~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~ 490 (525)
||.+.+. +++++.++++|+| + .|||++ .+++++.+.. +.++.++|+ |.|+.||+.+
T Consensus 765 Ldrd~i~--a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG~Sgtr~ 837 (889)
T TIGR03186 765 LARDGRA--AERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFGRSDTRA 837 (889)
T ss_pred hHHHHHH--HHHhCCcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCCCcCCHH
Confidence 9999986 6778899999997 5 699999 9999998753 679999998 9999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhccc
Q 009809 491 DQLAQAGLTPSHIAATVFNILGQTR 515 (525)
Q Consensus 491 ~l~~~~gl~~~~I~~~i~~~l~~~~ 515 (525)
+|+++||++++.|+.+++++|.+..
T Consensus 838 ~Lr~~fglda~~Iv~aal~~L~~~g 862 (889)
T TIGR03186 838 ALRAFFEVDRASIVIAALQALADDG 862 (889)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986643
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=3.9e-64 Score=554.82 Aligned_cols=489 Identities=20% Similarity=0.221 Sum_probs=360.3
Q ss_pred ccCCCCeEEEEEcccccccchhHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHH
Q 009809 7 LKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLREL 85 (525)
Q Consensus 7 l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~ 85 (525)
++..+++||||+|||+|+||++|||+.+|++++ .||+||+++|+++ +||.++.++.+-+.|++.+.+.+|+.+
T Consensus 228 ~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~------lDG~v~~~~~~~~~l~~~f~a~GW~Vi 301 (896)
T PRK13012 228 KDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQR------LDGPVRGNGRIIQELEALFRGAGWNVI 301 (896)
T ss_pred ccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCcc------ccCccccccccchHHHHHHHhCCCEEE
Confidence 466789999999999999999999999999997 5799999999987 799988877654555555555554443
Q ss_pred HH----HHhhhhccc-CCch------------HHHHHHHHHH-HhccccC--CccccccccC---ceEeeccCCCCHHHH
Q 009809 86 RE----VAKGVTKQI-GGPM------------HELAAKVDEY-ARGMISG--SGSTLFEELG---LYYIGPVDGHNVDDL 142 (525)
Q Consensus 86 ~~----~~~~~~~~~-~~~~------------~~~~~~~~~~-~~~~~~~--~~~~~~~~~g---~~~~~~~dG~d~~~l 142 (525)
+- .++.+..+- +..+ +.+..+...| +++|+.+ ....+.+.+. +... .-.|||+.+|
T Consensus 302 ~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l-~rgGHD~~~i 380 (896)
T PRK13012 302 KVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRL-KRGGHDPRKV 380 (896)
T ss_pred EEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhh-cCCCCCHHHH
Confidence 21 111111111 0000 0011111111 2233322 1111121111 0011 1249999999
Q ss_pred HHHHHHhhhcCCCCCEEEEEEccCCCCchhhhhccccccCCC--------------------------CCC-CCCCc---
Q 009809 143 VAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA--------------------------KFD-PATGK--- 192 (525)
Q Consensus 143 ~~al~~a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~--------------------------~~~-~~~~~--- 192 (525)
++|++.|++. .++|++|.++|+||+|.+.+.++.+.+|+.. +|. |+.+.
T Consensus 381 ~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~ 459 (896)
T PRK13012 381 YAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEM 459 (896)
T ss_pred HHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHH
Confidence 9999988863 4689999999999999975555667788732 111 10000
Q ss_pred --------------c--------cC-C------------CCCcccHHHHHHHHHHHHHhc---CCCEEEEecCCCCCcch
Q 009809 193 --------------Q--------FK-S------------SARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGGGTGL 234 (525)
Q Consensus 193 --------------~--------~~-~------------~~~~~~~~~a~~~~l~~~~~~---d~~~v~~~~D~~~s~~l 234 (525)
+ +. + ..+..++++||+++|.++++. .+++|.+++|+..++++
T Consensus 460 ~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm 539 (896)
T PRK13012 460 RYLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGM 539 (896)
T ss_pred HHHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCc
Confidence 0 00 0 113467899999999999987 89999999999977755
Q ss_pred -------------------------HHHHHhCCCCeeeccchHHHHHH--HHHHHhcC----CCeEEEeechhh-HHHHH
Q 009809 235 -------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSF-MQRAY 282 (525)
Q Consensus 235 -------------------------~~~~~~~p~r~~~~gIaE~~~~~--~a~G~A~~----G~~pi~~t~~~F-~~~a~ 282 (525)
..|++.+|+||+++||+|++|++ +|+|+|++ |++||+.+|++| .+|++
T Consensus 540 ~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~ 619 (896)
T PRK13012 540 ANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVG 619 (896)
T ss_pred ccccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHH
Confidence 23567899999999999999999 88888776 679999999999 58999
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc-----CCCcEEE
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI-----DDRPSCF 356 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~-----~~~Pv~i 356 (525)
||+++.++++..+++++++++|. .+++|+|||+.++++++|.+||++||.|+|+.|+..+++.++.+ .+.|+||
T Consensus 620 Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YI 699 (896)
T PRK13012 620 DLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYL 699 (896)
T ss_pred HHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 99999888888889999999887 68999999999999999999999999999999999999988743 2578999
Q ss_pred EecCCCCCCcccCCCCCCCccccCceEEEe---eCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEeccccccCcHHH
Q 009809 357 RYPRGNGIGVELPPGNKGIPLEVGKGRILI---EGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHAL 432 (525)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~---~g~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~~ 432 (525)
|+.+.+.+...+|+. ....+..|+ |+++ ++.+++|+++|+++++|++|++.|+++ ||+++||+++|++|||.+.
T Consensus 700 rL~r~~~~~p~~~~~-~~~~i~kG~-y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~ 777 (896)
T PRK13012 700 TVMNENYAQPALPEG-AEEGILKGM-YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDG 777 (896)
T ss_pred EecCCCCCCCCCCcc-chhccccCc-EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHH
Confidence 999987532223322 123344455 6664 366999999999999999999999999 9999999999999999997
Q ss_pred H-------------------HHHhcc-CCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHH
Q 009809 433 I-------------------RSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQ 492 (525)
Q Consensus 433 i-------------------~~~~~~-~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l 492 (525)
+ .+++.. ..++|+++++.. .+++.+.+.. +.++.++|+ |.|+.||+.++|
T Consensus 778 i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~-----aVae~l~~~~----~~~~~~LGv-D~FG~Sg~~~~L 847 (896)
T PRK13012 778 LAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVR-----AVPEQIRAFV----PARYVTLGT-DGFGRSDTRAAL 847 (896)
T ss_pred HHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHH-----HHHHHHHHhC----CCCeEEEee-CCCCCCCCHHHH
Confidence 6 223322 235555555432 4445555432 568889998 899999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhhccc
Q 009809 493 LAQAGLTPSHIAATVFNILGQTR 515 (525)
Q Consensus 493 ~~~~gl~~~~I~~~i~~~l~~~~ 515 (525)
+++||++++.|+++++++|.+..
T Consensus 848 ~~~fGlda~~Iv~aal~~La~~g 870 (896)
T PRK13012 848 RRFFEVDRHSIVLAALKALADDG 870 (896)
T ss_pred HHHhCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999986543
No 20
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-61 Score=502.87 Aligned_cols=427 Identities=23% Similarity=0.342 Sum_probs=352.8
Q ss_pred CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHH
Q 009809 11 KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 89 (525)
Q Consensus 11 ~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 89 (525)
|+.+||++|||+++||++|||..+|++++|+ |+++.++|+.+ |||.+... +
T Consensus 148 dh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~Is------iDG~~~~~--f-------------------- 199 (663)
T COG0021 148 DHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDIS------IDGDTSLS--F-------------------- 199 (663)
T ss_pred cceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCce------eccCcccc--c--------------------
Confidence 5799999999999999999999999999865 66666667755 67776632 1
Q ss_pred hhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCCC
Q 009809 90 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRG 169 (525)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~g 169 (525)
.+++ ..+|+++||+++..+||||+++|.+|+++|+.. +.+||+|.|+|+.|+|
T Consensus 200 ----------~ed~----------------~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~G 252 (663)
T COG0021 200 ----------TEDV----------------AKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKG 252 (663)
T ss_pred ----------chhH----------------HHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecC
Confidence 1333 235999999999999999999999999999985 6799999999999999
Q ss_pred chhhhhccccccCCCC-------------CCCC-----------------CCcc--------------cCC---------
Q 009809 170 YPYAEKAADKYHGVAK-------------FDPA-----------------TGKQ--------------FKS--------- 196 (525)
Q Consensus 170 ~~~~~~~~~~~h~~~~-------------~~~~-----------------~~~~--------------~~~--------- 196 (525)
.+..+ +..+.||.|. |+++ .++. .+|
T Consensus 253 sp~ke-gt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~ 331 (663)
T COG0021 253 SPNKE-GTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERR 331 (663)
T ss_pred CCCcC-CCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 98754 5678999871 2210 1100 000
Q ss_pred ------------------CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchH-----HHH-HhCCCCeeeccchH
Q 009809 197 ------------------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN-----LFL-RRFPTRCFDVGIAE 252 (525)
Q Consensus 197 ------------------~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~-----~~~-~~~p~r~~~~gIaE 252 (525)
..+....|++.+++|..+.+..|+++--++|+..|+.+. .|. +.+++|++..||.|
T Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVRE 411 (663)
T COG0021 332 LNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVRE 411 (663)
T ss_pred hcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHH
Confidence 012357789999999999999999999999999887652 333 56789999999999
Q ss_pred HHHHHHHHHHhcCC-CeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEE
Q 009809 253 QHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVV 330 (525)
Q Consensus 253 ~~~~~~a~G~A~~G-~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v 330 (525)
++|.+++.|+|++| ++|+..||..|..++..++ +.+++|++|++++.+|.++ .|+||||||++|+++.+|.|||+.|
T Consensus 412 f~M~AimNGialhGg~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V 490 (663)
T COG0021 412 FAMAAIMNGIALHGGFIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSV 490 (663)
T ss_pred HHHHHHHHhHHHhcCceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCcee
Confidence 99999999999986 5999999999999998885 5688999999999999998 8999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEee----CCcEEEEEechhHHHHHHH
Q 009809 331 MAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIE----GERVALLGYGTAVQSCLAA 406 (525)
Q Consensus 331 ~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~----g~dv~iva~G~~~~~a~~A 406 (525)
+.|+|+.|+..+++.|+.+.++|+++.++|++.+.. +.. ........+|++++ ++|++||++||.+..|++|
T Consensus 491 ~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l--~~t--~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~A 566 (663)
T COG0021 491 IRPADANETAAAWKYALERKDGPTALILTRQNLPVL--ERT--DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEA 566 (663)
T ss_pred EecCChHHHHHHHHHHHhcCCCCeEEEEecCCCCcc--CCC--ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHH
Confidence 999999999999999998889999999999985432 111 12223445688887 5899999999999999999
Q ss_pred HHHHHhCCCcEEEEeccccccCcH---HHHHHHhcc-CCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCc
Q 009809 407 SALLESNGLRLTVADARFCKPLDH---ALIRSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDR 482 (525)
Q Consensus 407 a~~L~~~Gi~v~vi~~~~l~P~d~---~~i~~~~~~-~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~ 482 (525)
++.|+++|++++||+++|...|+. ++-++++.. ....|.+|...+.||...+ .. +-..||+ +.
T Consensus 567 a~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~----g~--------~g~~ig~-~~ 633 (663)
T COG0021 567 AKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYV----GL--------DGAVIGM-DS 633 (663)
T ss_pred HHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhc----CC--------CCcEEee-cc
Confidence 999998899999999999999976 444555543 3447889999988997433 22 2345786 79
Q ss_pred cCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 483 YIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 483 ~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
|+.||+.++|+++||+++|.|++++++++
T Consensus 634 FG~Sap~~~l~~~fGft~e~vv~~~~~~l 662 (663)
T COG0021 634 FGASAPGDELFKEFGFTVENVVAKAKSLL 662 (663)
T ss_pred CcCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999876
No 21
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=2e-57 Score=460.38 Aligned_cols=306 Identities=21% Similarity=0.273 Sum_probs=267.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hHHHHHhCCC-CeeeccchHHHHHHHHHHHhcCCCeEEEee-
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCAI- 273 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~----l~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t- 273 (525)
..+++++|+++|.+++++||+++++++|++.+.+ +++|+++||+ ||+|+||+|++++++|+|+|+.|+|||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 3589999999999999999999999999964433 6899999999 999999999999999999999999999997
Q ss_pred chhhHHHHHHHHHHHhhcC--------CCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHH
Q 009809 274 YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 344 (525)
Q Consensus 274 ~~~F~~~a~dqi~~~~~~~--------~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~ 344 (525)
+..|++|++|||++++|++ ++||+++. +|. .+.+|+|||+..+ ++++++|||+|++|+|+.|++.+++
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~--~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRG--PGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEe--cCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 5567799999999999887 56777764 444 3468999965555 8999999999999999999999999
Q ss_pred HHHhcCCCcEEEEecCCCCC-CcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEecc
Q 009809 345 TAAAIDDRPSCFRYPRGNGI-GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 345 ~a~~~~~~Pv~i~~~~~~~~-~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
++++ .++|+|||+++.... ...+++ +.+.+++||+.++++|.|++||++|.+++.|++|++.|+++||+++|||++
T Consensus 160 ~a~~-~~~Pv~ire~~~l~~~~~~v~~--~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 236 (327)
T CHL00144 160 SAIR-SNNPVIFFEHVLLYNLKEEIPD--NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLI 236 (327)
T ss_pred HHHh-CCCcEEEEEcHHhcCCCCCCCC--CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 9975 679999997665432 112332 245678999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCC-CCChHHHHHHcCCCHH
Q 009809 424 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HGSPADQLAQAGLTPS 501 (525)
Q Consensus 424 ~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~-~g~~~~l~~~~gl~~~ 501 (525)
||+|||+++|.++++++++|||+|||+ .||+|++|++.+.++++...+.++.++|++|.|++ +|+.+++ +|++++
T Consensus 237 ~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~---~gl~~~ 313 (327)
T CHL00144 237 SLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEA---TVIQPA 313 (327)
T ss_pred cCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHH---hCCCHH
Confidence 999999999999999999999999998 79999999999999875333679999999999998 6777665 499999
Q ss_pred HHHHHHHHHhhcc
Q 009809 502 HIAATVFNILGQT 514 (525)
Q Consensus 502 ~I~~~i~~~l~~~ 514 (525)
+|+++++++++.+
T Consensus 314 ~I~~~i~~~l~~~ 326 (327)
T CHL00144 314 QIIEAVEQIITNK 326 (327)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988653
No 22
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1.8e-56 Score=454.20 Aligned_cols=306 Identities=25% Similarity=0.357 Sum_probs=271.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEeec
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY 274 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~----l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~ 274 (525)
+.+|+++++++|.+++++||+++++++|++.+.+ +++|+++| |+||+|+||+|++++++|+|+|+.|+|||++++
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 4589999999999999999999999999976655 48999999 999999999999999999999999999999997
Q ss_pred h-hhHHHHHHHHHHHhhcC--------CCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHH
Q 009809 275 S-SFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 345 (525)
Q Consensus 275 ~-~F~~~a~dqi~~~~~~~--------~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~ 345 (525)
+ .|++|++|||++++|++ ++|+++++.+ |..+.+|+|||+..+ +++|++||++|++|+|+.|+..++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 6 67899999999999988 4677776654 436788999977667 99999999999999999999999999
Q ss_pred HHhcCCCcEEEEecCCCCCCc-ccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccc
Q 009809 346 AAAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 424 (525)
Q Consensus 346 a~~~~~~Pv~i~~~~~~~~~~-~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 424 (525)
+++ .++|+||++++...... +++. +.+.+++|++.++++|.|++||+||+++..+++|++.|+++|++++||++++
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVPE--EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCCC--CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 986 58899998876543211 1222 2356789999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCC-CHHH
Q 009809 425 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-TPSH 502 (525)
Q Consensus 425 l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl-~~~~ 502 (525)
|+|||.+.|.++++++++|||+|+|. .|||+++|++.+.++++...+.++.+++.+|.|+++| ++++++|+ ++++
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~ 314 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEED 314 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHH
Confidence 99999999999999999999999998 7999999999999987543467999999999998865 89999998 9999
Q ss_pred HHHHHHHHhhc
Q 009809 503 IAATVFNILGQ 513 (525)
Q Consensus 503 I~~~i~~~l~~ 513 (525)
|++++++++++
T Consensus 315 I~~~i~~~~~~ 325 (327)
T PRK09212 315 IIEAVKKVCYR 325 (327)
T ss_pred HHHHHHHHHhh
Confidence 99999999854
No 23
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.7e-56 Score=457.63 Aligned_cols=309 Identities=22% Similarity=0.327 Sum_probs=269.0
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEee
Q 009809 199 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 273 (525)
Q Consensus 199 ~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~----l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t 273 (525)
+..+|+++++++|.+++++||+++++++|++.+.+ +++|.++| |+||+|+||+|++|+++|+|+|++|+|||+++
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~ 104 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEF 104 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 34689999999999999999999999999976544 45777777 99999999999999999999999999999999
Q ss_pred c-hhhHHHHHHHHHHHhhcCC--------CCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHH
Q 009809 274 Y-SSFMQRAYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 344 (525)
Q Consensus 274 ~-~~F~~~a~dqi~~~~~~~~--------~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~ 344 (525)
+ +.|++|++|||++++|+++ +||++++.+ |.....|+|||+.+ +++||.+|||+|++|+|+.|++.+++
T Consensus 105 ~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 105 MTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred ehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 5 6678999999999999887 999999987 54333599999887 59999999999999999999999999
Q ss_pred HHHhcCCCcEEEEecCCCCCCc-ccCCC--CCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEe
Q 009809 345 TAAAIDDRPSCFRYPRGNGIGV-ELPPG--NKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVAD 421 (525)
Q Consensus 345 ~a~~~~~~Pv~i~~~~~~~~~~-~~p~~--~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~ 421 (525)
++++ .++|+|||+++...... ++... ...+.+++|+++++++|.|++||++|+++..|++|++.|+++||+++|||
T Consensus 183 ~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId 261 (356)
T PLN02683 183 AAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVIN 261 (356)
T ss_pred HHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9985 57899999754332111 11110 11356778999999999999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCC-C
Q 009809 422 ARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-T 499 (525)
Q Consensus 422 ~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl-~ 499 (525)
++||+|||++.|.++++++++|||+|||. .||||++|++.+.++++...+.++.++|++|.++ +++..++++++ +
T Consensus 262 ~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~---p~~~~le~~~~p~ 338 (356)
T PLN02683 262 LRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPM---PYAANLERLALPQ 338 (356)
T ss_pred CCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCC---CccHHHHHhhCCC
Confidence 99999999999999999999999999998 7999999999999987533357999999999754 47788999888 9
Q ss_pred HHHHHHHHHHHhhc
Q 009809 500 PSHIAATVFNILGQ 513 (525)
Q Consensus 500 ~~~I~~~i~~~l~~ 513 (525)
+++|++++++++.+
T Consensus 339 ~~~i~~a~~~~~~~ 352 (356)
T PLN02683 339 VEDIVRAAKRACYR 352 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999965
No 24
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=4.3e-56 Score=466.71 Aligned_cols=307 Identities=22% Similarity=0.282 Sum_probs=273.7
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEee
Q 009809 199 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 273 (525)
Q Consensus 199 ~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~----l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t 273 (525)
..++++++++++|.+++++||+++++++|++.+.+ +++|.++| |+||+|+||+|++++|+|+|+|++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 45689999999999999999999999999976655 57899999 99999999999999999999999999999998
Q ss_pred c-hhhHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHH
Q 009809 274 Y-SSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 344 (525)
Q Consensus 274 ~-~~F~~~a~dqi~~~~~--------~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~ 344 (525)
+ ..|++|++|||++++| ++++||++++.++|..+ .|+ ||+.+|+++++++|||+|++|+|+.|++.+++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 5 5678999999999999 89999999988766433 666 99999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEecCCCCCCc-ccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEecc
Q 009809 345 TAAAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 345 ~a~~~~~~Pv~i~~~~~~~~~~-~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
++++ .++|+||++++..+... .+|.. .++.+++|+++++++|.|++||++|+++..|++|++.|+++||+++|||++
T Consensus 298 ~ai~-~~~Pv~ile~~~ry~~~~~vp~~-~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 298 AAIR-DPNPVIFLENEILYGQSFDVPKL-DDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred HHhh-CCCcEEEEechhhcCCCCCCCCc-CCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9985 57899996554322211 23322 236678999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCC-CHH
Q 009809 424 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-TPS 501 (525)
Q Consensus 424 ~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl-~~~ 501 (525)
||+|||+++|.++++++++|||+|||+ .||||++|++.+.++++..++.++.++|++|.|.+ ++.++++++| +++
T Consensus 376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l~~~~ 452 (464)
T PRK11892 376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLALPSVA 452 (464)
T ss_pred CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcCCCHH
Confidence 999999999999999999999999998 79999999999999886545679999999999876 8889999998 999
Q ss_pred HHHHHHHHHhh
Q 009809 502 HIAATVFNILG 512 (525)
Q Consensus 502 ~I~~~i~~~l~ 512 (525)
.|++++++++-
T Consensus 453 ~Iv~av~~~~~ 463 (464)
T PRK11892 453 EVVEAVKAVCY 463 (464)
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 25
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-54 Score=444.14 Aligned_cols=308 Identities=24% Similarity=0.362 Sum_probs=267.5
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcc-hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEe
Q 009809 198 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTG-LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 272 (525)
Q Consensus 198 ~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~---~s~~-l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~ 272 (525)
...++|+++++++|.+++++||+++++++|++ +.++ +++|+++| |+||+|+||+|++|+++|+|+|++|+|||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 45678999999999999999999999999997 2232 68999999 9999999999999999999999999999999
Q ss_pred e-chhhHHHHHHHHHHHhhcC--------CCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHH
Q 009809 273 I-YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV 343 (525)
Q Consensus 273 t-~~~F~~~a~dqi~~~~~~~--------~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~ 343 (525)
+ |++|++|++|||++++|++ ++|++++.. .|..|.+|+||++..+ +++|.+||++|++|+|+.|++.++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~-~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGP-NGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeC-CCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 8 8999999999999999985 566766643 3336789999966666 899999999999999999999999
Q ss_pred HHHHhcCCCcEEEEecCCCCCCcccCC-CCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEec
Q 009809 344 ATAAAIDDRPSCFRYPRGNGIGVELPP-GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADA 422 (525)
Q Consensus 344 ~~a~~~~~~Pv~i~~~~~~~~~~~~p~-~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 422 (525)
+++++ .++|+||++++...... .+. ....+.+++|++.++++|+|++||+||+++..+++|++.|+++|++++||++
T Consensus 190 ~~a~~-~~~P~~i~~p~~l~r~~-~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~ 267 (355)
T PTZ00182 190 KAAIR-DPNPVVFFEPKLLYRES-VEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDL 267 (355)
T ss_pred HHHHh-CCCcEEEEeehHHhCCC-CCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99986 58999998876532110 111 1123567889999999999999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHH
Q 009809 423 RFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPS 501 (525)
Q Consensus 423 ~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~ 501 (525)
++++|||++.|.+.++++++|||+|||. .||||++|++.+.++++..++.++.++|++|.|+++... +.+.+.++++
T Consensus 268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~ 345 (355)
T PTZ00182 268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKE 345 (355)
T ss_pred eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHH
Confidence 9999999999999999999999999998 799999999999998754346799999999999985433 6677899999
Q ss_pred HHHHHHHHHh
Q 009809 502 HIAATVFNIL 511 (525)
Q Consensus 502 ~I~~~i~~~l 511 (525)
+|++++++++
T Consensus 346 ~i~~~~~~~~ 355 (355)
T PTZ00182 346 KVVEAAKRVL 355 (355)
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 26
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.1e-54 Score=411.88 Aligned_cols=304 Identities=26% Similarity=0.387 Sum_probs=269.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCC---Ccc-hHHHHHhCCC-CeeeccchHHHHHHHHHHHhcCCCeEEEee-c
Q 009809 201 QSYTTYFAEALIAEAEVDKDVVAIHAAMGG---GTG-LNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 274 (525)
Q Consensus 201 ~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~---s~~-l~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t-~ 274 (525)
+++++|++++|.+.|++|++++++++|++. .++ +.++.++|++ |++||||+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 579999999999999999999999999973 333 3789999965 999999999999999999999999999999 9
Q ss_pred hhhHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 009809 275 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 346 (525)
Q Consensus 275 ~~F~~~a~dqi~~~~~~--------~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a 346 (525)
..|+..++|||+|++++ ..+|+++++..+|.. ..|.+|++..+ +++.++|||+|+.|++|.|++++|+.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~-~~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGI-GGGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCC-CchhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999874 468999998765532 24678888877 799999999999999999999999999
Q ss_pred HhcCCCcEEEEecCCCCC--CcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccc
Q 009809 347 AAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 424 (525)
Q Consensus 347 ~~~~~~Pv~i~~~~~~~~--~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 424 (525)
++ +++||+|++++..+. ..++|+ .+|..++||+.+.|+|.|+|||+||.|++.+++|+++|+++||+++|||+||
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~--~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE--EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC--CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 75 788999999987533 355774 4688999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHH-cCCCHHH
Q 009809 425 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQ-AGLTPSH 502 (525)
Q Consensus 425 l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~-~gl~~~~ 502 (525)
|+|+|.++|.+++++++++|+|+|.. ++|++++|++.+.++.+.++..|+.|++.+|.+.+ +...+|. +-.+++.
T Consensus 237 l~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p---~~~~lE~~~lp~~~~ 313 (324)
T COG0022 237 LSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVP---YSAALEKAYLPNPER 313 (324)
T ss_pred cCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCC---cchhHHhhhCCCHHH
Confidence 99999999999999999999999887 89999999999999988888999999999998876 3334444 5558999
Q ss_pred HHHHHHHHhh
Q 009809 503 IAATVFNILG 512 (525)
Q Consensus 503 I~~~i~~~l~ 512 (525)
|.++++++++
T Consensus 314 I~~av~~v~~ 323 (324)
T COG0022 314 IVAAVKKVLE 323 (324)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 27
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=4.4e-45 Score=396.68 Aligned_cols=488 Identities=19% Similarity=0.239 Sum_probs=354.9
Q ss_pred cCCCCeEEEEEcccccccchhHHHHHhccccCC-CEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHH
Q 009809 8 KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELR 86 (525)
Q Consensus 8 ~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l-~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~ 86 (525)
+..+++||||+|||+++||++|||+.+|++++| ||++|+++|+++ +||.++.++.+...|++.+...+|+.++
T Consensus 215 ~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~q------lDG~v~~~~~i~e~le~~F~a~GW~Vi~ 288 (885)
T TIGR00759 215 DTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQR------LDGPVRGNGKIIQELESLFRGAGWNVIK 288 (885)
T ss_pred CCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCc------cCCccccccccchhHHHHHHhcCCEEEE
Confidence 668899999999999999999999999999985 799999999987 7999998877667888888888887664
Q ss_pred H----HHhhhhccc-CCch------------HHHHHHHHH-HHhccccC--CccccccccC---ceEeeccCCCCHHHHH
Q 009809 87 E----VAKGVTKQI-GGPM------------HELAAKVDE-YARGMISG--SGSTLFEELG---LYYIGPVDGHNVDDLV 143 (525)
Q Consensus 87 ~----~~~~~~~~~-~~~~------------~~~~~~~~~-~~~~~~~~--~~~~~~~~~g---~~~~~~~dG~d~~~l~ 143 (525)
- .++.+..+- +..+ +.+..+... ++.+|+.+ .-..+.+.+. +... ..+|||+.+|+
T Consensus 289 V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l-~rgGHD~~~I~ 367 (885)
T TIGR00759 289 VLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWAL-NRGGHDPRKVY 367 (885)
T ss_pred EecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhc-cCCCCCHHHHH
Confidence 2 112122221 1111 111111111 23455433 2223333332 1122 46899999999
Q ss_pred HHHHHhhhcCCCCCEEEEEEccCCCCchhhhhccccccCCCC------------CC---------------CCCCc----
Q 009809 144 AILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK------------FD---------------PATGK---- 192 (525)
Q Consensus 144 ~al~~a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~~------------~~---------------~~~~~---- 192 (525)
+|++.|++. .++||+|.++|+||+|.+.+.++.+.+|+..+ |. |+.+.
T Consensus 368 ~A~~~A~~~-~grPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~ 446 (885)
T TIGR00759 368 AAYAAAQEH-KGQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVR 446 (885)
T ss_pred HHHHHHHhC-CCCCEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHH
Confidence 999988763 46899999999999999855566778897431 11 11110
Q ss_pred ---------------------cc-CC------------CCCcccHHHHHHHHHHHHHhcC---CCEEEEecCCCCCcchH
Q 009809 193 ---------------------QF-KS------------SARTQSYTTYFAEALIAEAEVD---KDVVAIHAAMGGGTGLN 235 (525)
Q Consensus 193 ---------------------~~-~~------------~~~~~~~~~a~~~~l~~~~~~d---~~~v~~~~D~~~s~~l~ 235 (525)
++ .| ..+.+|+..||++.|..+++.. ++||.+.+|...+++++
T Consensus 447 y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~ 526 (885)
T TIGR00759 447 YLLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGME 526 (885)
T ss_pred HHHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChH
Confidence 00 00 0145788999999999999743 47999999999999987
Q ss_pred HHHHh-------------------------CCCCeeeccchHHHHHHH--HHHHhcC--C--CeEEEeechhh-HHHHHH
Q 009809 236 LFLRR-------------------------FPTRCFDVGIAEQHAVTF--AAGLACE--G--LKPFCAIYSSF-MQRAYD 283 (525)
Q Consensus 236 ~~~~~-------------------------~p~r~~~~gIaE~~~~~~--a~G~A~~--G--~~pi~~t~~~F-~~~a~d 283 (525)
++.++ -.+|+++.||+|.++++. |+|.|.+ | +.||...|++| ++|..|
T Consensus 527 g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD 606 (885)
T TIGR00759 527 GLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGD 606 (885)
T ss_pred HhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHH
Confidence 75443 246899999999999984 7777774 6 68999999999 899999
Q ss_pred HHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEe
Q 009809 284 QVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 358 (525)
Q Consensus 284 qi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~ 358 (525)
. .+.+|++...-+++++.+|. ..+.|.+||+.....+...+||++.|.|+.+.|+..+++..+.+ ...-+|+++
T Consensus 607 ~-~waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yyl 685 (885)
T TIGR00759 607 L-CWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYV 685 (885)
T ss_pred H-HHHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 7 68899999999999999998 36679999987776677789999999999999999999998764 345688888
Q ss_pred cCCCCCCcccCCCCCCCcccc-CceEEEee------CCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEeccccccCcH
Q 009809 359 PRGNGIGVELPPGNKGIPLEV-GKGRILIE------GERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDH 430 (525)
Q Consensus 359 ~~~~~~~~~~p~~~~~~~~~~-g~~~~l~~------g~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~ 430 (525)
+..+.+ ...|..++.....+ ...|.+++ +++|.|+++|+.+.+|++|++.|+++ |+.++|++++|..-+..
T Consensus 686 t~~ne~-~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~R 764 (885)
T TIGR00759 686 TVMNEN-YVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELAR 764 (885)
T ss_pred EecCCC-CCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHH
Confidence 774421 11222211222222 23466665 24799999999999999999999986 99999999999877765
Q ss_pred HHH-------------------HHHhcc-CCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChH
Q 009809 431 ALI-------------------RSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPA 490 (525)
Q Consensus 431 ~~i-------------------~~~~~~-~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~ 490 (525)
+.. .+.+.. ..++|++-+.. -.+...|..++ +.++..+|. |.|+.|++.+
T Consensus 765 d~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~-~~~~~qir~~v--------p~~~~~LGt-DgFGrSdtr~ 834 (885)
T TIGR00759 765 DGHDVERWNLLHPTETPRVSYVAQVLNEADAPVIASTDYV-RAFAEQIRPYV--------PRKYVTLGT-DGFGRSDTRE 834 (885)
T ss_pred hHHHHHHHHhcCCCCCccccHHHHHhccCCCCEEEEccch-hhhHHHHhhhc--------CCCceEecC-CCCCCCCCHH
Confidence 532 222322 34677777653 12333332222 568889995 9999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhccc
Q 009809 491 DQLAQAGLTPSHIAATVFNILGQTR 515 (525)
Q Consensus 491 ~l~~~~gl~~~~I~~~i~~~l~~~~ 515 (525)
+|.++|+++++.|+.++.+.|.+..
T Consensus 835 ~lr~~fevDa~~IV~AAL~aL~~~g 859 (885)
T TIGR00759 835 NLRHFFEVDAKSVVLAALYALADDG 859 (885)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999886543
No 28
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=9.2e-46 Score=345.59 Aligned_cols=307 Identities=24% Similarity=0.373 Sum_probs=265.7
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcch-HHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEee
Q 009809 199 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 273 (525)
Q Consensus 199 ~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~---~s~~l-~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t 273 (525)
+.++.++|+++++.++|++||++++++++++ |++++ .++.++| +.|++||||+|.+..|+|.|+|+.|+||+++.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 5678999999999999999999999999987 44444 6888888 67999999999999999999999999999998
Q ss_pred -chhhHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHH
Q 009809 274 -YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 344 (525)
Q Consensus 274 -~~~F~~~a~dqi~~~~~~--------~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~ 344 (525)
...|.+.++|||+|.+++ +.+|+++++++ |....-|.+|++... +++.++||++|++|.+++|++++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 678999999999998864 56889888754 323345789999888 6899999999999999999999999
Q ss_pred HHHhcCCCcEEEEecCCCC-CCcccCCC--CCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEe
Q 009809 345 TAAAIDDRPSCFRYPRGNG-IGVELPPG--NKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVAD 421 (525)
Q Consensus 345 ~a~~~~~~Pv~i~~~~~~~-~~~~~p~~--~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~ 421 (525)
.|+ ++++||+++++.-.+ ...++|+. .+++..++|++.+.|+|.++|||++..++..+++|++.|.++|++++||+
T Consensus 191 aAI-Rd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVIn 269 (359)
T KOG0524|consen 191 AAI-RDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVIN 269 (359)
T ss_pred Hhc-cCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEe
Confidence 996 589999998876442 12234432 23477889999999999999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCC-C
Q 009809 422 ARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-T 499 (525)
Q Consensus 422 ~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl-~ 499 (525)
+++|+|||.++|..+++++.++++||+++ ++|.|++|++.+.|+.+..+..|+.|+...|.+-++ ...+|..-+ +
T Consensus 270 lrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PY---a~~lE~~a~p~ 346 (359)
T KOG0524|consen 270 LRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPY---AKTLEDWAVPQ 346 (359)
T ss_pred eeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCcc---chhhHhhcCCC
Confidence 99999999999999999999999999998 799999999999998777778999999999998874 334554444 7
Q ss_pred HHHHHHHHHHHh
Q 009809 500 PSHIAATVFNIL 511 (525)
Q Consensus 500 ~~~I~~~i~~~l 511 (525)
+++|+.++++++
T Consensus 347 ~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 347 PADIVTAVKKLC 358 (359)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 29
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=7.4e-40 Score=364.60 Aligned_cols=401 Identities=16% Similarity=0.157 Sum_probs=287.2
Q ss_pred cccccccCCC------CeEEEEEccccc-ccchhHHHHHhccccCCC---EEEEEECCCCCc-CCCCCCCCCCCcchhhh
Q 009809 2 AVGRDLKGRK------NNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVS-LPTATLDGPIPPVGALS 70 (525)
Q Consensus 2 A~a~~l~~~~------~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~---l~~iv~~N~~~~-~~~~~~~g~~~~~g~~~ 70 (525)
|+|.++++.+ .+++||+|||++ ++|.+||+||+|+.|++| ++|||+||++.. ++... ....
T Consensus 327 A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~--~~s~------ 398 (924)
T PRK09404 327 VRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPD--DRST------ 398 (924)
T ss_pred HHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHH--hccc------
Confidence 5666777666 799999999998 799999999999999997 999999998542 21110 0000
Q ss_pred HHHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhh
Q 009809 71 SALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK 150 (525)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~ 150 (525)
... ..+++++|++.+ .|||+|+.+++.|.+.|.
T Consensus 399 ------------------------------~~~----------------sd~Ak~~giP~~-~VDG~D~~AV~~a~~~A~ 431 (924)
T PRK09404 399 ------------------------------PYC----------------TDVAKMVQAPIF-HVNGDDPEAVVFATRLAL 431 (924)
T ss_pred ------------------------------hhH----------------HHHHeecCCcEE-EEcCCCHHHHHHHHHHHH
Confidence 000 113678899888 899999999998877664
Q ss_pred hc--CCCCCEEEEEEccCCCCchhhhhc----ccc---c--cCCC-----------------------------------
Q 009809 151 NT--KTTGPVLIHVVTEKGRGYPYAEKA----ADK---Y--HGVA----------------------------------- 184 (525)
Q Consensus 151 ~~--~~~~P~~i~v~t~kg~g~~~~~~~----~~~---~--h~~~----------------------------------- 184 (525)
++ ..++|++|++.|.+-+||...+.. +.. + |.-+
T Consensus 432 e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~ 511 (924)
T PRK09404 432 EYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFE 511 (924)
T ss_pred HHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 42 268899999999999999654321 000 1 1111
Q ss_pred -------------CCC----------CCCCcc-------------cCC--------------------CCCcccHHHHHH
Q 009809 185 -------------KFD----------PATGKQ-------------FKS--------------------SARTQSYTTYFA 208 (525)
Q Consensus 185 -------------~~~----------~~~~~~-------------~~~--------------------~~~~~~~~~a~~ 208 (525)
.|. .++|-+ .++ ..+...|..|..
T Consensus 512 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~ 591 (924)
T PRK09404 512 VVKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEA 591 (924)
T ss_pred HHHhcCcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHH
Confidence 000 001100 000 012257889999
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCc--------------c----hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeE
Q 009809 209 EALIAEAEVDKDVVAIHAAMGGGT--------------G----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKP 269 (525)
Q Consensus 209 ~~l~~~~~~d~~~v~~~~D~~~s~--------------~----l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~p 269 (525)
.++..+|++|++|+++++|++.++ + +.++.++| |.|++|+||+|.+++|.+.|+|+.|.+|
T Consensus 592 lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~ 671 (924)
T PRK09404 592 LAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNT 671 (924)
T ss_pred HHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999997421 1 35677777 8999999999999999999999999964
Q ss_pred --EEee-chhhHH---HHHHHHHHHh-hcC--CCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcC--CCcEEEccCCHHH
Q 009809 270 --FCAI-YSSFMQ---RAYDQVVHDV-DLQ--KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACL--PNMVVMAPSDEAE 338 (525)
Q Consensus 270 --i~~t-~~~F~~---~a~dqi~~~~-~~~--~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~i--pg~~v~~P~~~~e 338 (525)
+++. |++|+. .++||+++.+ +++ ..+++++.++++ .| .|+.|++..--+++... |||+|+.|++|.+
T Consensus 672 l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G~-~g-~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad 749 (924)
T PRK09404 672 LVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGY-EG-QGPEHSSARLERFLQLCAEDNMQVCNPTTPAQ 749 (924)
T ss_pred ceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CC-CChhhhccCHHHHHHhCCCCCCEEEecCCHHH
Confidence 9998 999975 7799998875 432 357888877653 33 45666653333566544 7999999999999
Q ss_pred HHHHHHHHHhcC-CCcEEEEecCCCCCC-------cccCCCCCCCccccCceEEEeeCCcE--EEEEechhHHHHHHHHH
Q 009809 339 LFHMVATAAAID-DRPSCFRYPRGNGIG-------VELPPGNKGIPLEVGKGRILIEGERV--ALLGYGTAVQSCLAASA 408 (525)
Q Consensus 339 ~~~~~~~a~~~~-~~Pv~i~~~~~~~~~-------~~~p~~~~~~~~~~g~~~~l~~g~dv--~iva~G~~~~~a~~Aa~ 408 (525)
++.+|+.++.++ .+|+++..+|..... .++++. .+...+++.. .+++.++ +||+||-+++.+++|++
T Consensus 750 ~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~--~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~ 826 (924)
T PRK09404 750 YFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEG--SFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARR 826 (924)
T ss_pred HHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCC--Cceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHH
Confidence 999999865444 599999998865321 111111 1223344433 4567789 79999999999999987
Q ss_pred HHHhCCCcEEEEeccccccCcHHHHHHHhccC---CeEEEEcC-CCCCCHHHHHHHHHHH
Q 009809 409 LLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEE-GSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 409 ~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~---~~vvvvE~-~~~gglg~~v~~~l~~ 464 (525)
.+. ..++.||++++|.|||.++|.++++++ +++|+++| +...|....|...+.+
T Consensus 827 ~~~--~~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~ 884 (924)
T PRK09404 827 KRG--IDDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEE 884 (924)
T ss_pred hCC--CCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHH
Confidence 542 349999999999999999999999886 35555555 4567777677666543
No 30
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=1.6e-38 Score=329.98 Aligned_cols=485 Identities=20% Similarity=0.232 Sum_probs=349.2
Q ss_pred CCCCeEEEEEcccccccchhHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHH-
Q 009809 9 GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELR- 86 (525)
Q Consensus 9 ~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~- 86 (525)
.++.+||||+|||+|.|+...+|+..|++.+ .|++|||++|.|. +||++...|.+.+.|++++.+.+|+.+|
T Consensus 219 ~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQr------LDgpVrgngkiiqelE~~FrgAGW~Vikv 292 (887)
T COG2609 219 TSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQR------LDGPVRGNGKIIQELEGIFRGAGWNVIKV 292 (887)
T ss_pred CCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhh------cCCcccCCchhHHHHHHHhccCCceEEEE
Confidence 5788999999999999999999999999887 6899999999987 8999999999999999999999988765
Q ss_pred ---HHHhhhhccc-CCchHHHHH------------HH-HHHHhccccC--CccccccccCceEee--ccCCCCHHHHHHH
Q 009809 87 ---EVAKGVTKQI-GGPMHELAA------------KV-DEYARGMISG--SGSTLFEELGLYYIG--PVDGHNVDDLVAI 145 (525)
Q Consensus 87 ---~~~~~~~~~~-~~~~~~~~~------------~~-~~~~~~~~~~--~~~~~~~~~g~~~~~--~~dG~d~~~l~~a 145 (525)
..++.++.+- +..+.+... +. ..++.+|+.. ....+.+++.-.-+- ...|||+.++++|
T Consensus 293 iWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA 372 (887)
T COG2609 293 IWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAA 372 (887)
T ss_pred EecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHH
Confidence 2333333332 111111111 11 1234455533 333444444411110 3689999999999
Q ss_pred HHHhhhcCCCCCEEEEEEccCCCCchhhhhccccccCCCC------------CCCC----CCcc----------------
Q 009809 146 LEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK------------FDPA----TGKQ---------------- 193 (525)
Q Consensus 146 l~~a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~~------------~~~~----~~~~---------------- 193 (525)
+++|+.. .++||+|.++|+||+|+..+.+.-+..|..++ |+.. .+++
T Consensus 373 ~~~A~~~-kg~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl 451 (887)
T COG2609 373 FKKAQEH-KGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYL 451 (887)
T ss_pred HHHHhcC-CCCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHH
Confidence 9999983 35899999999999999755555566777642 1110 0000
Q ss_pred -----------------c-----CC-----------CCCcccHHHHHHHHHHHHHhcC---CCEEEEecCCCCCcchHHH
Q 009809 194 -----------------F-----KS-----------SARTQSYTTYFAEALIAEAEVD---KDVVAIHAAMGGGTGLNLF 237 (525)
Q Consensus 194 -----------------~-----~~-----------~~~~~~~~~a~~~~l~~~~~~d---~~~v~~~~D~~~s~~l~~~ 237 (525)
+ .| ....+|...||...|.++++.. ++||.+.+|...+++++++
T Consensus 452 ~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~ 531 (887)
T COG2609 452 HARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGL 531 (887)
T ss_pred HHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhh
Confidence 0 00 1134788899999999999843 4799999999999988654
Q ss_pred HH-------------------------hCCCCeeeccchHHHHHH--HHHHHhcC--C--CeEEEeechhh-HHHHHHHH
Q 009809 238 LR-------------------------RFPTRCFDVGIAEQHAVT--FAAGLACE--G--LKPFCAIYSSF-MQRAYDQV 285 (525)
Q Consensus 238 ~~-------------------------~~p~r~~~~gIaE~~~~~--~a~G~A~~--G--~~pi~~t~~~F-~~~a~dqi 285 (525)
.. .-.+++++.||+|.++++ +|+|.|.+ | +.||...|++| ++|..|-
T Consensus 532 f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~- 610 (887)
T COG2609 532 FRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDL- 610 (887)
T ss_pred hhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHH-
Confidence 32 224689999999999998 47787774 5 78999999999 8999997
Q ss_pred HHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcC------CCcEEEE
Q 009809 286 VHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID------DRPSCFR 357 (525)
Q Consensus 286 ~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~------~~Pv~i~ 357 (525)
.+.+|.+...-.+++..+|. ..+.|.+|++....-+-..+||++.|.|+.+.|+..++++.+++- +--.||+
T Consensus 611 ~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt 690 (887)
T COG2609 611 LWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYIT 690 (887)
T ss_pred HHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEE
Confidence 68999999996666655555 355689999766544556799999999999999999999998642 1234566
Q ss_pred ecCCCCCCcccCCCCCCCccccCc-eEEEee-----CCcEEEEEechhHHHHHHHHHHHHh-CCCcEEEEeccccccCcH
Q 009809 358 YPRGNGIGVELPPGNKGIPLEVGK-GRILIE-----GERVALLGYGTAVQSCLAASALLES-NGLRLTVADARFCKPLDH 430 (525)
Q Consensus 358 ~~~~~~~~~~~p~~~~~~~~~~g~-~~~l~~-----g~dv~iva~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~ 430 (525)
+...+++....|.. ....+-| .|.++. +.++.|+++|....++++|++.|++ -|+.++|++++|..-+..
T Consensus 691 ~~ne~~~qPamp~g---ae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~r 767 (887)
T COG2609 691 LSNENYPQPAMPEG---AEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELAR 767 (887)
T ss_pred eccCcCCCCCCCCc---chhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhc
Confidence 65555332222322 2122222 355543 4689999999999999999999987 599999999988766543
Q ss_pred -------------------HHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHH
Q 009809 431 -------------------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPAD 491 (525)
Q Consensus 431 -------------------~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~ 491 (525)
..+.+.+....++|.+-+... .+. +++.. +. |.+...+|. |.|+.|++.++
T Consensus 768 dg~a~~R~n~lhP~~~~~v~yv~~~L~~~~p~Va~tDy~~-~~a----~qir~--~v--p~~y~vLGt-dgFGrSdsr~~ 837 (887)
T COG2609 768 DGQAAERWNLLHPTETPRVPYVAQVLNADGPVVAVTDYMK-LFA----EQIRA--VV--PQRYRVLGT-DGFGRSDSREN 837 (887)
T ss_pred chHHHHHHHhcCCCCCCCchHHHHHhccCCCeEEechhhH-hHH----HHHhc--cc--CCeeEEecc-CCCCccCcHHH
Confidence 244555554456777766542 122 33321 21 567788894 99999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcc
Q 009809 492 QLAQAGLTPSHIAATVFNILGQT 514 (525)
Q Consensus 492 l~~~~gl~~~~I~~~i~~~l~~~ 514 (525)
|.++|+++++.|+.++...+.+.
T Consensus 838 Lr~~fevDa~~vv~Aal~~La~~ 860 (887)
T COG2609 838 LRRFFEVDAYYVVVAALSALAKR 860 (887)
T ss_pred HHHHhccchHHHHHHHHHHHhcC
Confidence 99999999999999998887553
No 31
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.1e-38 Score=353.45 Aligned_cols=391 Identities=17% Similarity=0.173 Sum_probs=273.0
Q ss_pred CCeEEEEEccccc-ccchhHHHHHhccccCCCE---EEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHH
Q 009809 11 KNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDM---IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELR 86 (525)
Q Consensus 11 ~~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~l---~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~ 86 (525)
+..++||+|||++ ++|.+||+||+|+.|++|+ +|||+||++..+ |..-+....
T Consensus 343 ~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~t-T~~~~~~s~---------------------- 399 (929)
T TIGR00239 343 KVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFT-TNPLDARST---------------------- 399 (929)
T ss_pred ceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEE-EcHHHhcCc----------------------
Confidence 5789999999997 8999999999999999997 999999985421 100000000
Q ss_pred HHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEEEEEEc
Q 009809 87 EVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVT 164 (525)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~i~v~t 164 (525)
... ..+.+++|++.+ .|||+|+.+++.+.+.|.++ ..++|++|++.|
T Consensus 400 --------------~~~----------------sd~Ak~ygiP~~-~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~t 448 (929)
T TIGR00239 400 --------------PYC----------------SDLAKMIQAPIF-HVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVG 448 (929)
T ss_pred --------------cCH----------------HHHheecCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 000 113678899888 89999999999887766442 267899999999
Q ss_pred cCCCCchhhhhccccc----------cCCC-----------------------------------------CCCCC----
Q 009809 165 EKGRGYPYAEKAADKY----------HGVA-----------------------------------------KFDPA---- 189 (525)
Q Consensus 165 ~kg~g~~~~~~~~~~~----------h~~~-----------------------------------------~~~~~---- 189 (525)
.+-+||...++. ..| |.-+ +..+.
T Consensus 449 YR~~GHne~D~p-~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~ 527 (929)
T TIGR00239 449 YRRHGHNEADEP-SATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTW 527 (929)
T ss_pred ccCCCCCCCCCC-ccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccc
Confidence 999999654321 111 1111 00000
Q ss_pred -------------CCcc-------------cCC---------------------CCCcccHHHHHHHHHHHHHhcCCCEE
Q 009809 190 -------------TGKQ-------------FKS---------------------SARTQSYTTYFAEALIAEAEVDKDVV 222 (525)
Q Consensus 190 -------------~~~~-------------~~~---------------------~~~~~~~~~a~~~~l~~~~~~d~~~v 222 (525)
++-+ .++ ..+...|..|.+.+|..+|++|++++
T Consensus 528 ~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~ 607 (929)
T TIGR00239 528 SPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVR 607 (929)
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEE
Confidence 0000 000 01225789999999999999999999
Q ss_pred EEecCCCCC-c----------------c-hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEE--Eee-chhhHH-
Q 009809 223 AIHAAMGGG-T----------------G-LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPF--CAI-YSSFMQ- 279 (525)
Q Consensus 223 ~~~~D~~~s-~----------------~-l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi--~~t-~~~F~~- 279 (525)
++++|++.+ + + +.++.++| +.|++|++|+|.+++|++.|+|+.|.+|+ ++. |++|+.
T Consensus 608 l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~ 687 (929)
T TIGR00239 608 LSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANG 687 (929)
T ss_pred EEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcc
Confidence 999999742 2 1 35677777 79999999999999999999999997774 887 999985
Q ss_pred --HHHHHHHHHh-hcC--CCCeEEEEcCCCCCCCCCCCCcchhhhhhh--hcCCCcEEEccCCHHHHHHHHH-HHHhcCC
Q 009809 280 --RAYDQVVHDV-DLQ--KLPVRFAMDRAGLVGADGPTHCGSFDVTFM--ACLPNMVVMAPSDEAELFHMVA-TAAAIDD 351 (525)
Q Consensus 280 --~a~dqi~~~~-~~~--~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~--~~ipg~~v~~P~~~~e~~~~~~-~a~~~~~ 351 (525)
.++||+++.. +++ ..+++++.++++ .| .|+.|++..--.++ .+.|||+|+.|++|.+++.+|+ +++...+
T Consensus 688 AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~-~g-~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~~ 765 (929)
T TIGR00239 688 AQVVIDQFISSGEQKWGQMSGLVMLLPHGY-EG-QGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGMR 765 (929)
T ss_pred hHHHHHHHHHHHHHHhcCccCeEEEecCcC-CC-CCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCCC
Confidence 7799998873 433 356888877653 33 35555553232566 7889999999999999999999 5765448
Q ss_pred CcEEEEecCCCCCC-------cccCCCCCCCccccCceE-----EEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q 009809 352 RPSCFRYPRGNGIG-------VELPPGNKGIPLEVGKGR-----ILIEGERVALLGYGTAVQSCLAASALLESNGLRLTV 419 (525)
Q Consensus 352 ~Pv~i~~~~~~~~~-------~~~p~~~~~~~~~~g~~~-----~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~v 419 (525)
+|+++..+|..... .++|+. .+...+++.. +.+++-+.+|+++| +++.++.+ ++++.+|+++.|
T Consensus 766 ~Pvi~~~~K~L~r~~~a~S~~~e~~~~--~f~~~i~~~~~~~~~~~~~~v~~vv~~sg-~v~~~l~~-~~~~~~~~~v~i 841 (929)
T TIGR00239 766 RPLVVMSPKSLLRHPLAVSSLEELAEG--TFQPVIGEIEESGLSLDPEGVKRLVLCSG-KVYYDLHE-QRRKNGQKDVAI 841 (929)
T ss_pred CCEEEeccHhhhcCccccCccccCCCC--CcccccccccccccccCccCCcEEEEECc-hHHHHHHH-HHHhcCCCCEEE
Confidence 99999998865321 123332 2333343221 11223344455555 77777766 666778999999
Q ss_pred EeccccccCcHHHHHHHhccCC---eEEEEcC-CC-CCCHHHHHHHHHH
Q 009809 420 ADARFCKPLDHALIRSLAKSHE---VLITVEE-GS-IGGFGSHVVQFLA 463 (525)
Q Consensus 420 i~~~~l~P~d~~~i~~~~~~~~---~vvvvE~-~~-~gglg~~v~~~l~ 463 (525)
|++++|+|||.++|.++++++. .+|++.| .. .|.|. .+...|.
T Consensus 842 irle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~-~v~~rl~ 889 (929)
T TIGR00239 842 VRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWY-YSQPHLR 889 (929)
T ss_pred EEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHH-HHHHHHH
Confidence 9999999999999999998774 5555555 44 57775 4444443
No 32
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=6.9e-37 Score=333.52 Aligned_cols=440 Identities=17% Similarity=0.191 Sum_probs=314.6
Q ss_pred cccccccCCCCeEEEEEcccccccchh---HHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQA---YEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQ 77 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~---~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~ 77 (525)
|++.++++++.+|+|++|||++++|.. |++.+++...+ .+++.|+++|+++ +++++...- .
T Consensus 151 A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~------Is~pt~~~~-~-------- 215 (785)
T PRK05261 151 AYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYK------IANPTILAR-I-------- 215 (785)
T ss_pred HHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCc------CCCCccccc-c--------
Confidence 667788999999999999999999984 88888887665 6799999999865 344332100 0
Q ss_pred cChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHH--------HH--
Q 009809 78 SNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI--------LE-- 147 (525)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~a--------l~-- 147 (525)
..+++. ..|++|||.++ .|||||+.++.++ ++
T Consensus 216 ---------------------~~e~l~----------------~rf~g~Gw~~i-~VDG~D~~av~~a~a~al~~~i~~i 257 (785)
T PRK05261 216 ---------------------SDEELE----------------ALFRGYGYEPY-FVEGDDPADMHQEMAAALDTAIEEI 257 (785)
T ss_pred ---------------------CcHhHH----------------HHHHHCCCeeE-EECCCCHHHHHHHHHHHHHHHHHHH
Confidence 012222 23899999999 6899999887776 44
Q ss_pred -----Hhhhc-CCCCCE--EEEEEccCCCCchh-----hhhccccccCCCC-------------------------CCCC
Q 009809 148 -----EVKNT-KTTGPV--LIHVVTEKGRGYPY-----AEKAADKYHGVAK-------------------------FDPA 189 (525)
Q Consensus 148 -----~a~~~-~~~~P~--~i~v~t~kg~g~~~-----~~~~~~~~h~~~~-------------------------~~~~ 189 (525)
+||.. ...+|+ +|.++|+||+|-+. .-++..+.|++|. |+..
T Consensus 258 ~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~ 337 (785)
T PRK05261 258 RAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDED 337 (785)
T ss_pred HHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCC
Confidence 33331 115898 99999999999552 1124456788761 2110
Q ss_pred ------------CCc-------------ccC----C-------------CCCcccHHHHHHHHHHHHHhcCCC-EEEEec
Q 009809 190 ------------TGK-------------QFK----S-------------SARTQSYTTYFAEALIAEAEVDKD-VVAIHA 226 (525)
Q Consensus 190 ------------~~~-------------~~~----~-------------~~~~~~~~~a~~~~l~~~~~~d~~-~v~~~~ 226 (525)
.|. ..+ + ......++. ++..|.++++.+|+ ++++++
T Consensus 338 g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~~np~~frvf~p 416 (785)
T PRK05261 338 GRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIKLNPDNFRIFGP 416 (785)
T ss_pred CchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccccccHHH-HHHHHHHHHHhCCCceEEEcC
Confidence 000 000 0 001224545 99999999999998 889999
Q ss_pred CCCCCcchHHHHH-----------------hCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhH---HHHHHHHH
Q 009809 227 AMGGGTGLNLFLR-----------------RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQVV 286 (525)
Q Consensus 227 D~~~s~~l~~~~~-----------------~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~---~~a~dqi~ 286 (525)
|...|..+....+ ...+|+++ +++|++|.|++.|+++.|.++++.+|.+|+ ..|+.|..
T Consensus 417 De~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~ 495 (785)
T PRK05261 417 DETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHA 495 (785)
T ss_pred CcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcCCCcceecHHHHHHHHHHHHHHHH
Confidence 9998887743322 22379999 999999999999999999999999999997 88888874
Q ss_pred HHhhc-----C--CCC-eEEEEcCCCC-CCCCCCCCcc---hhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcE
Q 009809 287 HDVDL-----Q--KLP-VRFAMDRAGL-VGADGPTHCG---SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 354 (525)
Q Consensus 287 ~~~~~-----~--~~p-vvi~~~~~G~-~g~~G~tH~~---~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv 354 (525)
.++-. . .++ +.++.++.+. .|++|+|||. ++.++.+|. |++.||.|+|++|+..+++.|+++.++|.
T Consensus 496 kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~ 574 (785)
T PRK05261 496 KWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYIN 574 (785)
T ss_pred HHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCE
Confidence 43330 1 122 3455566555 7999999999 999888888 99999999999999999999998888999
Q ss_pred EEEecCCCCCCcccCCCCCCCccccCc-eEEEe--e-----CCcEEEEEechhHHH-HHHHHHHHHhC--CCcEEEEecc
Q 009809 355 CFRYPRGNGIGVELPPGNKGIPLEVGK-GRILI--E-----GERVALLGYGTAVQS-CLAASALLESN--GLRLTVADAR 423 (525)
Q Consensus 355 ~i~~~~~~~~~~~~p~~~~~~~~~~g~-~~~l~--~-----g~dv~iva~G~~~~~-a~~Aa~~L~~~--Gi~v~vi~~~ 423 (525)
+|..+|++.+... ... .....+.+ ++++. + ++|++|+++|+.+.. |++|++.|+++ |++++||++.
T Consensus 575 ~IvlsRQ~lp~~~--~~~-~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~ 651 (785)
T PRK05261 575 VIVAGKQPRPQWL--SMD-EARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVV 651 (785)
T ss_pred EEEEeCCCCcccC--ChH-HHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 9999999854321 111 00111222 35554 2 369999999999987 99999999999 9999999994
Q ss_pred ccccC------------cHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHH
Q 009809 424 FCKPL------------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPAD 491 (525)
Q Consensus 424 ~l~P~------------d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~ 491 (525)
.+| +.+.+.++....++||+.= .|....|...+..+. .+.++...|..+. +..-++-+
T Consensus 652 --dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~----hgyp~~i~~l~~~r~---~~~~~~v~gy~e~-g~tttp~d 721 (785)
T PRK05261 652 --DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAF----HGYPWLIHRLTYRRT---NHHNFHVRGYKEE-GTTTTPFD 721 (785)
T ss_pred --hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEe----CCCHHHHHHHhccCC---CCCccEEEEEecC-CCCCCHHH
Confidence 443 3466777777777766532 344555555554331 2356777786543 44567889
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 009809 492 QLAQAGLTPSHIAATVFNI 510 (525)
Q Consensus 492 l~~~~gl~~~~I~~~i~~~ 510 (525)
++-..++|.-.++..+.+.
T Consensus 722 m~~~N~~~r~~l~~~a~~~ 740 (785)
T PRK05261 722 MVVLNELDRFHLAIDAIDR 740 (785)
T ss_pred HHHHhCCCHHHHHHHHHHh
Confidence 9999999988888776554
No 33
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2e-38 Score=292.12 Aligned_cols=304 Identities=20% Similarity=0.311 Sum_probs=253.4
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCC--cc-hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEee
Q 009809 198 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGG--TG-LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 273 (525)
Q Consensus 198 ~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s--~~-l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t 273 (525)
.++++..++++++|.-.++.||+.+++++|++-+ +. ..+++++| .+|++|+|++||.++|...|+|..|.+++.++
T Consensus 38 ~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaei 117 (362)
T KOG0525|consen 38 KKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEI 117 (362)
T ss_pred cccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEE
Confidence 4567888999999999999999999999998732 22 35788888 58999999999999999999999999999999
Q ss_pred -chhhHHHHHHHHHHHhhcC--------CCC-eEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHH
Q 009809 274 -YSSFMQRAYDQVVHDVDLQ--------KLP-VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV 343 (525)
Q Consensus 274 -~~~F~~~a~dqi~~~~~~~--------~~p-vvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~ 343 (525)
|++++..++|||.|.++.. ++. ..++ ..+|..|+.+..|+++.+ ++|.+.||++|+.|.+|.++++++
T Consensus 118 qfadyifpafdqivneaakfryrsgnqfncg~ltir-~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakgll 195 (362)
T KOG0525|consen 118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR-APWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLL 195 (362)
T ss_pred eeccccchhHHHHHHHHHhheeccCCccccCceEEe-ccccccccccccccCCch-hheecCCCceEEecCCcchhhcee
Confidence 9999999999999998752 333 4444 446667888999999888 799999999999999999999999
Q ss_pred HHHHhcCCCcEEEEecCCCC--CCcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHH-hCCCcEEEE
Q 009809 344 ATAAAIDDRPSCFRYPRGNG--IGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE-SNGLRLTVA 420 (525)
Q Consensus 344 ~~a~~~~~~Pv~i~~~~~~~--~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~-~~Gi~v~vi 420 (525)
..+++ +.+|+++.++|-.+ ...++|.. +|.++++++.++|+|+|+|+|+||..++.++|++..-+ +.|++++||
T Consensus 196 lscir-dpnp~iffepk~lyr~a~edvp~~--dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevi 272 (362)
T KOG0525|consen 196 LSCIR-DPNPCIFFEPKILYRQAVEDVPEG--DYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVI 272 (362)
T ss_pred eeecc-CCCceEEechHHHHHHhhhhCCCC--CccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEE
Confidence 99964 78999999988542 22346653 58889999999999999999999999999999987554 459999999
Q ss_pred eccccccCcHHHHHHHhccCCeE-EEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCC-
Q 009809 421 DARFCKPLDHALIRSLAKSHEVL-ITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL- 498 (525)
Q Consensus 421 ~~~~l~P~d~~~i~~~~~~~~~v-vvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl- 498 (525)
|+++|-|+|.+.+.++++++.++ |..|...+||+|++|+..+.++.++.+..|+.|+..-|.+-+. +.+-+.|
T Consensus 273 dlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-----vfepfy~p 347 (362)
T KOG0525|consen 273 DLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-----VFEPFYMP 347 (362)
T ss_pred eeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-----cccccccC
Confidence 99999999999999999877555 4555556999999999999999887777888888766765442 2233555
Q ss_pred CHHHHHHHHHHHh
Q 009809 499 TPSHIAATVFNIL 511 (525)
Q Consensus 499 ~~~~I~~~i~~~l 511 (525)
+...|.++|++.+
T Consensus 348 tk~ki~daik~~v 360 (362)
T KOG0525|consen 348 TKNKILDAIKKTV 360 (362)
T ss_pred cHhHHHHHHHHhc
Confidence 6888999988643
No 34
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1.7e-34 Score=263.51 Aligned_cols=154 Identities=50% Similarity=0.823 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHH
Q 009809 206 YFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQV 285 (525)
Q Consensus 206 a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi 285 (525)
+++++|.+++++||+++++++|++.+..+.+|.++||+||+|+||+|++++++|+|+|+.|++|++++|..|+.|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999888889999999999999999999999999999999999999999977889999999
Q ss_pred HHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecC
Q 009809 286 VHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 360 (525)
Q Consensus 286 ~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~ 360 (525)
+++++++++||+++++++|+ .+.+|+|||+.+|+++++.+||++|++|+|++|++.+++++++ +++|+|+|++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999887 5689999999999999999999999999999999999999986 46799999875
No 35
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.98 E-value=5.6e-32 Score=248.25 Aligned_cols=153 Identities=29% Similarity=0.409 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCC----cchHHHHHhCCC-CeeeccchHHHHHHHHHHHhcCCCeEEEe-echhhH
Q 009809 205 TYFAEALIAEAEVDKDVVAIHAAMGGG----TGLNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFM 278 (525)
Q Consensus 205 ~a~~~~l~~~~~~d~~~v~~~~D~~~s----~~l~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~G~~pi~~-t~~~F~ 278 (525)
++++++|.+++++||+++++++|++.+ ..+++|+++||+ ||+|+||+|++++|+|+|+|+.|++||++ +|++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 378899999999999999999998642 246899999999 99999999999999999999999999999 699999
Q ss_pred HHHHHHHHHHhhcC--------CCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcC
Q 009809 279 QRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 350 (525)
Q Consensus 279 ~~a~dqi~~~~~~~--------~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~ 350 (525)
.|++||+++++|++ ++||++++.++| .+.+|+||+ .+|++++|.+||++|++|+|+.|+..+++++++ .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999976 499999997666 567889875 567899999999999999999999999999985 5
Q ss_pred CCcEEEEecC
Q 009809 351 DRPSCFRYPR 360 (525)
Q Consensus 351 ~~Pv~i~~~~ 360 (525)
++|++++++|
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 7899999875
No 36
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.97 E-value=1.1e-31 Score=250.57 Aligned_cols=163 Identities=41% Similarity=0.555 Sum_probs=141.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhC---CCCeeeccchHHHHHHHHHHHhcCC--CeEEEeec
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF---PTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAIY 274 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~---p~r~~~~gIaE~~~~~~a~G~A~~G--~~pi~~t~ 274 (525)
+.+|+++++++|.+++++||+++++++|+++++....+...+ |+||+|+||+|++++++|+|+|+.| ++|++.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 568999999999999999999999999999665544444444 5699999999999999999999999 67777789
Q ss_pred hhhHH----HHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc
Q 009809 275 SSFMQ----RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 349 (525)
Q Consensus 275 ~~F~~----~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~ 349 (525)
++|+. |+++|++++.++++.||. ++.+.|+ .+.+|+|||+.+|+++++.+|||+|++|+|+.|++.++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99998 999999999999999999 6777776 68899999999999999999999999999999999999999874
Q ss_pred -CCCcEEEEecCCCC
Q 009809 350 -DDRPSCFRYPRGNG 363 (525)
Q Consensus 350 -~~~Pv~i~~~~~~~ 363 (525)
+++|+|||++|.++
T Consensus 161 ~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 161 ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSSSEEEEEEESSEE
T ss_pred CCCCeEEEEeeHHhC
Confidence 58999999999863
No 37
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.96 E-value=4.3e-28 Score=224.51 Aligned_cols=158 Identities=42% Similarity=0.608 Sum_probs=137.2
Q ss_pred cHHHHHHHHHHHHHhcCC-CEEEEecCCCCCcchHHHHHhCCCC-------eeeccchHHHHHHHHHHHhcCCCeEEEee
Q 009809 202 SYTTYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLRRFPTR-------CFDVGIAEQHAVTFAAGLACEGLKPFCAI 273 (525)
Q Consensus 202 ~~~~a~~~~l~~~~~~d~-~~v~~~~D~~~s~~l~~~~~~~p~r-------~~~~gIaE~~~~~~a~G~A~~G~~pi~~t 273 (525)
+++++++++|.+++++|+ +++++++|++.++++.. .+.||++ |+|+||+|++++++|+|+|++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 478899999999999965 99999999987765542 4556665 99999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCC
Q 009809 274 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 352 (525)
Q Consensus 274 ~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~ 352 (525)
|+.|+.|++||+++.+++.++|+++... +|. .|.+|+|||+.+|+++++.+||++|++|+|++|++.++++++...++
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~-~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~ 158 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHD-SGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDG 158 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEec-CccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCC
Confidence 9999999999999888876566655443 344 67889999999999999999999999999999999999999865578
Q ss_pred cEEEEecCC
Q 009809 353 PSCFRYPRG 361 (525)
Q Consensus 353 Pv~i~~~~~ 361 (525)
|+|||++++
T Consensus 159 p~~i~~~~~ 167 (168)
T smart00861 159 PPVIRLERK 167 (168)
T ss_pred CEEEEecCC
Confidence 999998764
No 38
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.93 E-value=3.2e-27 Score=225.23 Aligned_cols=148 Identities=54% Similarity=0.886 Sum_probs=90.8
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
||.|+++.++++.||++||||+|+.||++||||.|+..+.|+++|++||+|++ .+++|++++.|.++++++
T Consensus 123 ma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSI---------s~nvGals~~L~~l~~~~ 193 (270)
T PF13292_consen 123 MAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSI---------SPNVGALSKYLSKLRSSP 193 (270)
T ss_dssp HHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSS---------SB--SSHCCC--------
T ss_pred HHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCccc---------CCCcchHHHHHHhccchh
Confidence 57888999999999999999999999999999999999999999999999984 678999999999999999
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|+.+|+.++.+++.+ +......++.++..+.+ .+ ++|+++||.|++|+||||+++|.++|+.+++ .++|++|
T Consensus 194 ~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~---~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvll 266 (270)
T PF13292_consen 194 TYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP---NLFEELGFDYIGPIDGHDLEELIEVLENAKD--IDGPVLL 266 (270)
T ss_dssp ----------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCC--SSSEEEE
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH---HHHHHcCCeEEeccCCCCHHHHHHHHHHHhc--CCCCEEE
Confidence 9999999999999877 56666677777777666 33 8999999999999999999999999999999 6999999
Q ss_pred EEEc
Q 009809 161 HVVT 164 (525)
Q Consensus 161 ~v~t 164 (525)
||.|
T Consensus 267 HV~T 270 (270)
T PF13292_consen 267 HVIT 270 (270)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 9987
No 39
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.91 E-value=5.9e-23 Score=210.62 Aligned_cols=254 Identities=17% Similarity=0.130 Sum_probs=186.1
Q ss_pred HHHHhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcc
Q 009809 236 LFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG 315 (525)
Q Consensus 236 ~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~ 315 (525)
.+..++...|++ .-+|++++++|.|+|++|.|+++.|+++++..+++.+ ..++.+++|++++...++. ...|.++..
T Consensus 42 ~~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e~P~v~v~v~R~~-p~~g~t~~e 118 (352)
T PRK07119 42 RRLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAELPCVIVNIMRGG-PGLGNIQPS 118 (352)
T ss_pred HHHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHccCCEEEEEeccCC-CCCCCCcch
Confidence 334455567888 8999999999999999999999999999999999995 6788899998877754442 223458888
Q ss_pred hhhhhhhhc-----CCCcEEEccCCHHHHHHHHHHHHhcC---CCcEEEEecCCC---CCCcccCCC-----CC-CCcc-
Q 009809 316 SFDVTFMAC-----LPNMVVMAPSDEAELFHMVATAAAID---DRPSCFRYPRGN---GIGVELPPG-----NK-GIPL- 377 (525)
Q Consensus 316 ~~d~~~~~~-----ipg~~v~~P~~~~e~~~~~~~a~~~~---~~Pv~i~~~~~~---~~~~~~p~~-----~~-~~~~- 377 (525)
+.|+.+.+. --+|.+++|+|+||++++...||+.. .-||+++.+... .....+|+. ++ ....
T Consensus 119 q~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~ 198 (352)
T PRK07119 119 QGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVT 198 (352)
T ss_pred hHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccC
Confidence 888755432 23499999999999999999998754 459998875421 001111110 00 0000
Q ss_pred ccC-------------------------c-e-----------EEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q 009809 378 EVG-------------------------K-G-----------RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 420 (525)
Q Consensus 378 ~~g-------------------------~-~-----------~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi 420 (525)
... + . +...+++|++||+||+++..+++|++.|+++|++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi 278 (352)
T PRK07119 199 GTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLF 278 (352)
T ss_pred CCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEE
Confidence 000 0 0 01124689999999999999999999999999999999
Q ss_pred eccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCH
Q 009809 421 DARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTP 500 (525)
Q Consensus 421 ~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~ 500 (525)
+++++||||.+.|.++++++++|+|+|++ .|.+..+|...+.. ..++..+|..+. .-+++
T Consensus 279 ~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~~------~~~~~~i~k~~G-------------~~~~~ 338 (352)
T PRK07119 279 RPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVNG------KKPVEFYGRMGG-------------MVPTP 338 (352)
T ss_pred eeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhCC------CCceeEEeccCC-------------EeCCH
Confidence 99999999999999999999999999998 47788887654421 112333442111 34589
Q ss_pred HHHHHHHHHHhh
Q 009809 501 SHIAATVFNILG 512 (525)
Q Consensus 501 ~~I~~~i~~~l~ 512 (525)
+.|.++++++++
T Consensus 339 ~~i~~~~~~~~~ 350 (352)
T PRK07119 339 EEILEKIKEILG 350 (352)
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 40
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.90 E-value=8.5e-22 Score=203.64 Aligned_cols=248 Identities=17% Similarity=0.194 Sum_probs=177.5
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
....|+++- +|++++++|.|+|++|.|+++.|+++++..+.|++ ..++..++|+|++...++..+..-++++++.|+.
T Consensus 47 ~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 47 VGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMM 124 (376)
T ss_pred hCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHH
Confidence 345788887 99999999999999999999999999999999995 4556689998887754432223347788877865
Q ss_pred hhhc----CCCcEEEccCCHHHHHHHHHHHHhcC---CCcEEEEecCCC---CCCcccCCC-----------------CC
Q 009809 321 FMAC----LPNMVVMAPSDEAELFHMVATAAAID---DRPSCFRYPRGN---GIGVELPPG-----------------NK 373 (525)
Q Consensus 321 ~~~~----ipg~~v~~P~~~~e~~~~~~~a~~~~---~~Pv~i~~~~~~---~~~~~~p~~-----------------~~ 373 (525)
..+. --+++|++|+|+||++++...||+.. +.|++++.+... .....+|+. ..
T Consensus 125 ~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 204 (376)
T PRK08659 125 QARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYK 204 (376)
T ss_pred HHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccC
Confidence 5552 12478999999999999999998753 469988765311 000000000 00
Q ss_pred CCc-----cc----cC--c------------------------------------------eEE-EeeCCcEEEEEechh
Q 009809 374 GIP-----LE----VG--K------------------------------------------GRI-LIEGERVALLGYGTA 399 (525)
Q Consensus 374 ~~~-----~~----~g--~------------------------------------------~~~-l~~g~dv~iva~G~~ 399 (525)
.+. +. .+ . ... -.+++|++||+||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~ 284 (376)
T PRK08659 205 PFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSV 284 (376)
T ss_pred CCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCcc
Confidence 000 00 01 0 000 113689999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeec
Q 009809 400 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 400 ~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~ 479 (525)
+..+++|++.|+++|++++++++++++|||.+.|.++++++++|+|+|+| .|.+..++...+.. ..++..++.
T Consensus 285 ~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g~l~~el~~~~~~------~~~~~~i~~ 357 (376)
T PRK08659 285 ARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LGQMSLEVERVVNG------RAKVEGINK 357 (376)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHhCC------CCCeeEEec
Confidence 99999999999999999999999999999999999999999999999999 57777776655431 112222321
Q ss_pred CCccCCCCChHHHHHHcCCCHHHHHHHHHHH
Q 009809 480 PDRYIDHGSPADQLAQAGLTPSHIAATVFNI 510 (525)
Q Consensus 480 ~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~ 510 (525)
.+ | .-++++.|.++++++
T Consensus 358 ~~-----G--------~~~~~~ei~~~~~~~ 375 (376)
T PRK08659 358 IG-----G--------ELITPEEILEKIKEV 375 (376)
T ss_pred cC-----C--------CcCCHHHHHHHHHhh
Confidence 11 1 236889999988764
No 41
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.89 E-value=8.2e-22 Score=203.09 Aligned_cols=246 Identities=16% Similarity=0.217 Sum_probs=177.9
Q ss_pred hCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcC-CCCCCCCCCCCcchhh
Q 009809 240 RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDR-AGLVGADGPTHCGSFD 318 (525)
Q Consensus 240 ~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~-~G~~g~~G~tH~~~~d 318 (525)
+....|+++ =+|++++++|.|+|++|.|.++.|+++++..+.|++ ..++.+++|++++... +|. +...++..++.|
T Consensus 45 ~~g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~e~P~V~~~~~R~Gp-stG~p~~~~q~D 121 (375)
T PRK09627 45 KCGGTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIAEIPLVIVNVMRGGP-STGLPTRVAQGD 121 (375)
T ss_pred HcCCEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhccCCEEEEEeccCCC-cCCCCCccchHH
Confidence 344456665 499999999999999999999999999999999995 5567899998887754 453 223477777778
Q ss_pred hhhhh-----cCCCcEEEccCCHHHHHHHHHHHHhcC---CCcEEEEecCCC---CCCcccCC-------------CC--
Q 009809 319 VTFMA-----CLPNMVVMAPSDEAELFHMVATAAAID---DRPSCFRYPRGN---GIGVELPP-------------GN-- 372 (525)
Q Consensus 319 ~~~~~-----~ipg~~v~~P~~~~e~~~~~~~a~~~~---~~Pv~i~~~~~~---~~~~~~p~-------------~~-- 372 (525)
+...+ .. +++|++|+|+||++++...||+.. .-||+++.+... .....+|+ ..
T Consensus 122 ~~~~~~~~hgd~-~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 200 (375)
T PRK09627 122 VNQAKNPTHGDF-KSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGD 200 (375)
T ss_pred HHHHhcCCCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCC
Confidence 76655 33 356999999999999999998753 459988765411 00000000 00
Q ss_pred -CCC-cccc-------------------------------------------------------CceEEE-eeCCcEEEE
Q 009809 373 -KGI-PLEV-------------------------------------------------------GKGRIL-IEGERVALL 394 (525)
Q Consensus 373 -~~~-~~~~-------------------------------------------------------g~~~~l-~~g~dv~iv 394 (525)
..+ ++.. ...... .+++|++||
T Consensus 201 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV 280 (375)
T PRK09627 201 KKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILII 280 (375)
T ss_pred cccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEE
Confidence 000 0000 000000 135789999
Q ss_pred EechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcce
Q 009809 395 GYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKW 474 (525)
Q Consensus 395 a~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~ 474 (525)
+||++...+++|++.|+++|++++++++++++|||.+.|+++++++++|+|+|++. |+|..+|...+... ++
T Consensus 281 ~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~-Gql~~~v~~~~~~~-------~~ 352 (375)
T PRK09627 281 AYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM-GQYLEEIERVMQRD-------DF 352 (375)
T ss_pred EeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh-HHHHHHHHHHhCCC-------Cc
Confidence 99999999999999999999999999999999999999999999999999999997 88988887666321 12
Q ss_pred EEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHH
Q 009809 475 RPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 510 (525)
Q Consensus 475 ~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~ 510 (525)
..++..+ | ..++++.|.++++++
T Consensus 353 ~~i~~~~-----G--------~~~~~~~i~~~i~~~ 375 (375)
T PRK09627 353 HFLGKAN-----G--------RPISPSEIIAKVKEL 375 (375)
T ss_pred eEEeeeC-----C--------CcCCHHHHHHHHHhC
Confidence 2222111 1 236889999888753
No 42
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.89 E-value=7.4e-22 Score=216.89 Aligned_cols=246 Identities=20% Similarity=0.243 Sum_probs=185.4
Q ss_pred CCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhh--cCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD--LQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~--~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
+.++....+|.+++++|.|+|++|.|.++.|.++++.++.|++.. ++ -++.|++++..... | .++++....|..
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~~--g-p~~~~~~q~d~~ 121 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADDP--S-MHSSQNEQDTRH 121 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccCC--C-CccchhhHhHHH
Confidence 456677789999999999999999999999999999999999755 44 34677777664332 2 247788888876
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcC---CCcEEEEecCCC---CCCcccCCC---CC--CCcccc----------
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAID---DRPSCFRYPRGN---GIGVELPPG---NK--GIPLEV---------- 379 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~---~~Pv~i~~~~~~---~~~~~~p~~---~~--~~~~~~---------- 379 (525)
+.+. .++.|++|+|+||++++..+||+.+ .-||+++.+... .....+++. .. .+..+.
T Consensus 122 ~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (595)
T TIGR03336 122 YAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIA 200 (595)
T ss_pred HHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhH
Confidence 6665 6889999999999999999998754 469998875421 011111100 00 000000
Q ss_pred ------------------Cc--e-EEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc
Q 009809 380 ------------------GK--G-RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK 438 (525)
Q Consensus 380 ------------------g~--~-~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~ 438 (525)
.. . .+..+++|++||+||+++..+++|++.| |++++|++++++||||++.|.++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~ 277 (595)
T TIGR03336 201 RVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLS 277 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHh
Confidence 00 0 1112467999999999999999987765 9999999999999999999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHH
Q 009809 439 SHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 510 (525)
Q Consensus 439 ~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~ 510 (525)
+++.|||+|+|. +++++.+...+.+.+ .++.++|++|.|++ +..+|+++.|.++++++
T Consensus 278 ~~~~vivvEe~~-~~~~~~~~~~~~~~~-----~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 278 GVEEVLVVEELE-PVVEEQVKALAGTAG-----LNIKVHGKEDGFLP--------REGELNPDIVVNALAKF 335 (595)
T ss_pred cCCeEEEEeCCc-cHHHHHHHHHHHhcC-----CCeEEecccCCccC--------cccCcCHHHHHHHHHHh
Confidence 999999999997 556655554444432 37889999999998 45899999999999876
No 43
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.88 E-value=1.6e-20 Score=194.34 Aligned_cols=204 Identities=17% Similarity=0.220 Sum_probs=159.2
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCc
Q 009809 249 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNM 328 (525)
Q Consensus 249 gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~ 328 (525)
.=+|++++++|.|+|++|.|+++.|+++++..+.|++ ..++++++|+|++...++.. ..+++|..+.|+.+.+. .++
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~~~lPiVi~~~~R~~p-~~~~~~~~q~D~~~~~d-~g~ 131 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAGARLPIVMVDVNRAMA-PPWSVWDDQTDSLAQRD-TGW 131 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHhcCCCEEEEEeccCCC-CCCCCcchhhHHHHHhh-cCE
Confidence 3599999999999999999999999999999999995 56788999998877544432 35689999999876665 699
Q ss_pred EEEccCCHHHHHHHHHHHHhcC---CCcEEEEecCCC----CCCcc----------cCCCCC-------CCcc-------
Q 009809 329 VVMAPSDEAELFHMVATAAAID---DRPSCFRYPRGN----GIGVE----------LPPGNK-------GIPL------- 377 (525)
Q Consensus 329 ~v~~P~~~~e~~~~~~~a~~~~---~~Pv~i~~~~~~----~~~~~----------~p~~~~-------~~~~------- 377 (525)
++++|+|+||++++...||+.. .-|++++.+... ..... +|.... +.+.
T Consensus 132 i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~ 211 (390)
T PRK08366 132 MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALAT 211 (390)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCCC
Confidence 9999999999999999998753 469888774311 00000 010000 0000
Q ss_pred ---------c----------------------cCceEE-E-----eeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q 009809 378 ---------E----------------------VGKGRI-L-----IEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 420 (525)
Q Consensus 378 ---------~----------------------~g~~~~-l-----~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi 420 (525)
. +|+.+. . .+++|++||+||++...+++|++.|+++|++++++
T Consensus 212 ~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l 291 (390)
T PRK08366 212 PADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYA 291 (390)
T ss_pred CcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeE
Confidence 0 111111 1 13578999999999999999999999999999999
Q ss_pred eccccccCcHHHHHHHhccCCeEEEEcCCCC-CCHH
Q 009809 421 DARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFG 455 (525)
Q Consensus 421 ~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~-gglg 455 (525)
++++++|||.+.|.++++++++|+|+|.+.+ |++|
T Consensus 292 ~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g 327 (390)
T PRK08366 292 KVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEG 327 (390)
T ss_pred EEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCccc
Confidence 9999999999999999999999999999985 7744
No 44
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.88 E-value=2.9e-20 Score=194.39 Aligned_cols=254 Identities=17% Similarity=0.165 Sum_probs=184.1
Q ss_pred CeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 323 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~ 323 (525)
.|+++ =+|++++++|.|+|++|.|.++.|+++++..+.|.+ ..+++.++|+|++...+|+.+ ..++|.+..|+...|
T Consensus 58 ~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r 134 (407)
T PRK09622 58 EFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASGMRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR 134 (407)
T ss_pred EEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHHhhCCEEEEEeccccCC-CcCCCchHHHHHHHh
Confidence 46665 399999999999999999999999999999999995 567789999888887666433 378899999987766
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHhcC-----CCcEEEEecCCC----CCCcccCCC----------C-CC------Cc-
Q 009809 324 CLPNMVVMAPSDEAELFHMVATAAAID-----DRPSCFRYPRGN----GIGVELPPG----------N-KG------IP- 376 (525)
Q Consensus 324 ~ipg~~v~~P~~~~e~~~~~~~a~~~~-----~~Pv~i~~~~~~----~~~~~~p~~----------~-~~------~~- 376 (525)
. .+|.+++|+|+||++++...|++.. ..|++++.+... .....+|+. . .. .+
T Consensus 135 ~-~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (407)
T PRK09622 135 D-SGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPV 213 (407)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCc
Confidence 4 7899999999999999999998753 569988765421 000101000 0 00 00
Q ss_pred -cc------------------------------------cCceEE-----EeeCCcEEEEEechhHHHHHHHHHHHHhCC
Q 009809 377 -LE------------------------------------VGKGRI-----LIEGERVALLGYGTAVQSCLAASALLESNG 414 (525)
Q Consensus 377 -~~------------------------------------~g~~~~-----l~~g~dv~iva~G~~~~~a~~Aa~~L~~~G 414 (525)
.. .++.+. -.++++++||++|+++..+++|++.|+++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G 293 (407)
T PRK09622 214 TYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEG 293 (407)
T ss_pred cCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCC
Confidence 00 000000 013678999999999999999999999999
Q ss_pred CcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCC-CcceEEeecCCccCCCCChHHH
Q 009809 415 LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDG-TVKWRPLVLPDRYIDHGSPADQ 492 (525)
Q Consensus 415 i~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~-~~~~~~ig~~d~~~~~g~~~~l 492 (525)
++++++++++++|||.+.|.++++++++|+|+|++. .||+|..+.+.+..-..... ..++ .++ ..++..|
T Consensus 294 ~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~-v~~--~~~g~gG----- 365 (407)
T PRK09622 294 IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPV-VSN--YIYGLGG----- 365 (407)
T ss_pred CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCce-Eee--eEECCCC-----
Confidence 999999999999999999999999999999999997 68888755554432211000 0222 111 1222222
Q ss_pred HHHcCCCHHHHHHHHHHHhh
Q 009809 493 LAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 493 ~~~~gl~~~~I~~~i~~~l~ 512 (525)
..++++.|.+.++++..
T Consensus 366 ---~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 366 ---RDMTIAHLCEIFEELNE 382 (407)
T ss_pred ---CCCCHHHHHHHHHHHHh
Confidence 34689999998887765
No 45
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.88 E-value=3.3e-20 Score=192.45 Aligned_cols=246 Identities=16% Similarity=0.159 Sum_probs=181.7
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCc
Q 009809 249 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNM 328 (525)
Q Consensus 249 gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~ 328 (525)
.=+|++++++|.|+|++|.|.+++|+++++..+.|++ ..++++++|++++...+++ +...++|..+.|+...|. -+|
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~rd-~g~ 132 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAGMRLPIVMAIGNRAL-SAPINIWNDWQDTISQRD-TGW 132 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHHccCCEEEEECCCCC-CCCCCcCcchHHHHhccc-cCe
Confidence 3699999999999999999999999999999999995 6688899999998866664 334578888888766665 568
Q ss_pred EEEccCCHHHHHHHHHHHHhcCC-----CcEEEEecCC----CCCCcccCC----------C-------CCCCccc----
Q 009809 329 VVMAPSDEAELFHMVATAAAIDD-----RPSCFRYPRG----NGIGVELPP----------G-------NKGIPLE---- 378 (525)
Q Consensus 329 ~v~~P~~~~e~~~~~~~a~~~~~-----~Pv~i~~~~~----~~~~~~~p~----------~-------~~~~~~~---- 378 (525)
.+++|+|+||++++...|++..+ -|++++.+.- ......+|+ . +...+..
T Consensus 133 ~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~ 212 (394)
T PRK08367 133 MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGAL 212 (394)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCC
Confidence 89999999999999999988655 4988876541 111111110 0 0000000
Q ss_pred ----------------------------------cCceEE-E----eeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q 009809 379 ----------------------------------VGKGRI-L----IEGERVALLGYGTAVQSCLAASALLESNGLRLTV 419 (525)
Q Consensus 379 ----------------------------------~g~~~~-l----~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~v 419 (525)
.|+.+. + .+++|++||+||+....+.+|++.|+++|+++++
T Consensus 213 ~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGl 292 (394)
T PRK08367 213 AFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGA 292 (394)
T ss_pred CCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCccee
Confidence 121111 1 1468999999999999999999999999999999
Q ss_pred EeccccccCcHHHHHHHhccCCeEEEEcCCC----CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHH
Q 009809 420 ADARFCKPLDHALIRSLAKSHEVLITVEEGS----IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQ 495 (525)
Q Consensus 420 i~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~----~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~ 495 (525)
+++++++|||.+.|+++++++|+|+|+|.+. .|.|..+|...|...+- ..++. +.. ++-.|
T Consensus 293 lri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~~---~~~v~--~~~--~glgg-------- 357 (394)
T PRK08367 293 AKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVNESE---KPKIL--DFI--IGLGG-------- 357 (394)
T ss_pred EEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccCC---CCeEE--EEE--eCCCC--------
Confidence 9999999999999999999999999999986 36677888777743221 12221 110 11112
Q ss_pred cCCCHHHHHHHHHHHhh
Q 009809 496 AGLTPSHIAATVFNILG 512 (525)
Q Consensus 496 ~gl~~~~I~~~i~~~l~ 512 (525)
..++++.|.+.++++++
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 358 RDVTFKQLDEALEIAEK 374 (394)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34789999998887664
No 46
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.87 E-value=3.4e-23 Score=181.86 Aligned_cols=123 Identities=35% Similarity=0.599 Sum_probs=114.2
Q ss_pred CceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHH
Q 009809 380 GKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHV 458 (525)
Q Consensus 380 g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v 458 (525)
|++.++++|+|++||+||++++.|++|++.|+++|++++||++++++|||.+.|.++++++++++|+|+|. .||+|+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHH
Q 009809 459 VQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 503 (525)
Q Consensus 459 ~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I 503 (525)
.+.+.++++.....++.++|.+|.|.++| .+++++++|+++++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99999987642347899999999999999 999999999999987
No 47
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.86 E-value=3.3e-20 Score=201.69 Aligned_cols=219 Identities=17% Similarity=0.182 Sum_probs=167.8
Q ss_pred CCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFM 322 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~ 322 (525)
+-++...-+|++++++|.|+|++|.|+++.|+++++..+.|.+ ..++..++|+|++...++..+...+|+..+.|+.+.
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~ 315 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFA 315 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHH
Confidence 4566666899999999999999999999999999999999997 667779999888875444222334789998997666
Q ss_pred hcCC----CcEEEccCCHHHHHHHHHHHHhcC---CCcEEEEecCCC---CCCcccCCC-----------------CCCC
Q 009809 323 ACLP----NMVVMAPSDEAELFHMVATAAAID---DRPSCFRYPRGN---GIGVELPPG-----------------NKGI 375 (525)
Q Consensus 323 ~~ip----g~~v~~P~~~~e~~~~~~~a~~~~---~~Pv~i~~~~~~---~~~~~~p~~-----------------~~~~ 375 (525)
+.-. ++.|++|+|+||++++...|++.. ..||+++.+... .....+|+. ...+
T Consensus 316 ~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (562)
T TIGR03710 316 LYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRY 395 (562)
T ss_pred hcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCC
Confidence 5421 389999999999999999998753 459988765311 000000000 0000
Q ss_pred --------cc-ccCc---------------------------------------------eEE-EeeCCcEEEEEechhH
Q 009809 376 --------PL-EVGK---------------------------------------------GRI-LIEGERVALLGYGTAV 400 (525)
Q Consensus 376 --------~~-~~g~---------------------------------------------~~~-l~~g~dv~iva~G~~~ 400 (525)
+. ..|. ... -.++++++||+||++.
T Consensus 396 ~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~ 475 (562)
T TIGR03710 396 ELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTY 475 (562)
T ss_pred CcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCH
Confidence 00 0010 000 0125789999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHH
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l 462 (525)
..+.+|++.|+++|++++++++++++|||.+.|.++++++++|+|+|++.+|+|..+|...+
T Consensus 476 ~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 476 GAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998899998887766
No 48
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.5e-19 Score=186.56 Aligned_cols=390 Identities=20% Similarity=0.232 Sum_probs=243.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccC----CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD----SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQ 77 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~----l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~ 77 (525)
|+++.+++||-++.|++|||+-.+|...-+..--..++ ..++-|+.-|++.+... ..++.++
T Consensus 162 a~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNGykI~np-------T~lar~s------- 227 (793)
T COG3957 162 AYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNGYKIENP-------TVLARIS------- 227 (793)
T ss_pred HHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecceeccCc-------eeeeecC-------
Confidence 67889999999999999999877775433332222332 56899999999763211 1111110
Q ss_pred cChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHH--------HHHHH-
Q 009809 78 SNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV--------AILEE- 148 (525)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~--------~al~~- 148 (525)
-.+. .++|+.+||..+ -++|+|+++.- .+++.
T Consensus 228 ----------------------~~el----------------~~~f~G~Gy~p~-~veg~d~~d~hq~mAa~ldt~~~~i 268 (793)
T COG3957 228 ----------------------DEEL----------------KALFEGYGYEPV-FVEGADPADMHQLMAAVLDTAFEEI 268 (793)
T ss_pred ----------------------hHHH----------------HHHHhhCCCcee-EecCCChHHhhhhHHHHHHHHHHHH
Confidence 1111 235999999877 57888887622 22222
Q ss_pred ------hhhc-CCCCC--EEEEEEccCCCCchhhhh-----ccccccCCCC-------------------------CCCC
Q 009809 149 ------VKNT-KTTGP--VLIHVVTEKGRGYPYAEK-----AADKYHGVAK-------------------------FDPA 189 (525)
Q Consensus 149 ------a~~~-~~~~P--~~i~v~t~kg~g~~~~~~-----~~~~~h~~~~-------------------------~~~~ 189 (525)
++.. ...+| .+|...|+||++-+..-. +.-..|.++- |+..
T Consensus 269 ~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~sy~p~elfde~ 348 (793)
T COG3957 269 QRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLKSYKPEELFDEH 348 (793)
T ss_pred HHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCCCCCCchhhHHHHHHHHhcChHhhhccc
Confidence 2221 12334 578999999987643221 1222465540 1100
Q ss_pred ------------CCcc----------------cC-C------------CCCcccHHHHHHHHHHHHHhcCCC-EEEEecC
Q 009809 190 ------------TGKQ----------------FK-S------------SARTQSYTTYFAEALIAEAEVDKD-VVAIHAA 227 (525)
Q Consensus 190 ------------~~~~----------------~~-~------------~~~~~~~~~a~~~~l~~~~~~d~~-~v~~~~D 227 (525)
+|.. ++ | ......-..++++.+.+.++.|++ +.++++|
T Consensus 349 gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~~fRvf~PD 428 (793)
T COG3957 349 GALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAESTTALGRFLRDVMKLNPDNFRVFGPD 428 (793)
T ss_pred CCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccchhhHHHHHHHHHHHHhcCccceEeeCCC
Confidence 0000 00 0 011233457899999999999987 9999999
Q ss_pred CCCCcchHHHHH---h--------------CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhH---HHHHHHHHH
Q 009809 228 MGGGTGLNLFLR---R--------------FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQVVH 287 (525)
Q Consensus 228 ~~~s~~l~~~~~---~--------------~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~---~~a~dqi~~ 287 (525)
.-.|.++.+..+ + ..+|+++ .+||+++.|.+.|.++.|.+.++++|.+|+ .-|+.|...
T Consensus 429 E~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr~glf~sYEaF~~iv~sm~nQh~k 507 (793)
T COG3957 429 ETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGRHGLFASYEAFAHIVDSMFNQHAK 507 (793)
T ss_pred cchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcCCccceeeHHHHHHHHHHHHhhhHH
Confidence 888877644221 1 1368888 799999999999999999999999999997 344444322
Q ss_pred Hh--hc-----CCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhh-cCCC-cEEEccCCHHHHHHHHHHHHhcCCCcEEE
Q 009809 288 DV--DL-----QKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMA-CLPN-MVVMAPSDEAELFHMVATAAAIDDRPSCF 356 (525)
Q Consensus 288 ~~--~~-----~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~-~ipg-~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i 356 (525)
++ +. ...|-......++. .+.+|.|||...-+..+. ..++ +.||.|.|++-+..++.+|+...++-.+|
T Consensus 508 wl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~i 587 (793)
T COG3957 508 WLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVI 587 (793)
T ss_pred HHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhhhhHHhhccCceEEE
Confidence 22 11 12222222233444 689999999876654444 3444 67999999999999999999866667777
Q ss_pred EecCCCCCCcc-cCCCCCCCccccCceEEEee---CCcEEEEEechhH-HHHHHHHHHHHhCC--CcEEEEeccc---cc
Q 009809 357 RYPRGNGIGVE-LPPGNKGIPLEVGKGRILIE---GERVALLGYGTAV-QSCLAASALLESNG--LRLTVADARF---CK 426 (525)
Q Consensus 357 ~~~~~~~~~~~-~p~~~~~~~~~~g~~~~l~~---g~dv~iva~G~~~-~~a~~Aa~~L~~~G--i~v~vi~~~~---l~ 426 (525)
..+|++.+... ..+........++-+..... ++||++.+.|.+. -++++|++.|++++ ++++||++.- |.
T Consensus 588 Va~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq 667 (793)
T COG3957 588 VASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQ 667 (793)
T ss_pred EecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhcc
Confidence 78887643210 00000000111111222221 3589999999974 89999999999998 9988887643 33
Q ss_pred c-------CcHHHHHHHhccCCeEEE
Q 009809 427 P-------LDHALIRSLAKSHEVLIT 445 (525)
Q Consensus 427 P-------~d~~~i~~~~~~~~~vvv 445 (525)
| ++.+.+..+..+.++++.
T Consensus 668 ~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 668 PPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred CCccCCCCCCHHHHHhcCCCCcceee
Confidence 3 223445555555566554
No 49
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.7e-20 Score=173.14 Aligned_cols=112 Identities=37% Similarity=0.595 Sum_probs=96.5
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
||+|.|+++.+++||++.|||+++||++|||+..|++++ .|++.|++.|+.+ +||.++++-.
T Consensus 131 mAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Q------ldG~t~~i~~----------- 193 (243)
T COG3959 131 MALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQ------LDGETEEIMP----------- 193 (243)
T ss_pred HHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcc------cCCchhhccC-----------
Confidence 689999999999999999999999999999999999997 5699999999976 6887665421
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
.+++.+| |++|||+++ .+||||+++|.+|++.++.. .++|++
T Consensus 194 --------------------~~pL~~k----------------~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~ 235 (243)
T COG3959 194 --------------------KEPLADK----------------WEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTV 235 (243)
T ss_pred --------------------cchhHHH----------------HHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeE
Confidence 2333333 899999999 89999999999999999874 349999
Q ss_pred EEEEccCC
Q 009809 160 IHVVTEKG 167 (525)
Q Consensus 160 i~v~t~kg 167 (525)
|+++|+||
T Consensus 236 IIa~Tvkg 243 (243)
T COG3959 236 IIAKTVKG 243 (243)
T ss_pred EEEecccC
Confidence 99999987
No 50
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.82 E-value=1.7e-20 Score=190.06 Aligned_cols=128 Identities=27% Similarity=0.374 Sum_probs=102.5
Q ss_pred Ccccccc-------cCCCCeEEEEEcccccccchhHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHH
Q 009809 1 MAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSA 72 (525)
Q Consensus 1 ~A~a~~l-------~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~ 72 (525)
||+|.++ .+.+++|||++|||+++||++|||+++|+.++ .||++|+++|+++ +||.+..++..
T Consensus 130 mAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~q------idG~t~~v~~~--- 200 (386)
T cd02017 130 QARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQR------LDGPVRGNGKI--- 200 (386)
T ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCc------cCCcccccccC---
Confidence 4666665 56789999999999999999999999999998 5799999999876 67777764322
Q ss_pred HhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccC-----------------
Q 009809 73 LSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD----------------- 135 (525)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d----------------- 135 (525)
.+++.+ .|++|||+++ .|+
T Consensus 201 ---------------------------~e~l~~----------------kf~AfGW~vi-~V~~g~~~~~~f~~~gg~~l 236 (386)
T cd02017 201 ---------------------------IQELEG----------------IFRGAGWNVI-KVIWGSKWDELLAKDGGGAL 236 (386)
T ss_pred ---------------------------chhHHH----------------HHHhcCCEEE-EEecCCcchhhhccCcchHH
Confidence 123333 3888999988 566
Q ss_pred ----------------------------------------------------CCCHHHHHHHHHHhhhcCCCCCEEEEEE
Q 009809 136 ----------------------------------------------------GHNVDDLVAILEEVKNTKTTGPVLIHVV 163 (525)
Q Consensus 136 ----------------------------------------------------G~d~~~l~~al~~a~~~~~~~P~~i~v~ 163 (525)
|||+++|++|+++++.. .++|++|.++
T Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~ 315 (386)
T cd02017 237 RQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAK 315 (386)
T ss_pred HHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEe
Confidence 99999999999999863 4789999999
Q ss_pred ccCCCCchhhhhccccccC
Q 009809 164 TEKGRGYPYAEKAADKYHG 182 (525)
Q Consensus 164 t~kg~g~~~~~~~~~~~h~ 182 (525)
|+||+|.+.+.++...+|+
T Consensus 316 TikG~G~~~~~e~~~~~h~ 334 (386)
T cd02017 316 TIKGYGLGAAGEGRNHAHQ 334 (386)
T ss_pred CeecCCCChhccCCcchhc
Confidence 9999999843345567785
No 51
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.82 E-value=2.7e-20 Score=175.83 Aligned_cols=109 Identities=63% Similarity=1.054 Sum_probs=92.8
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|+|.++++++++|||++|||+++||++||||++|+.+++|+++||+||++++ ++.... .
T Consensus 87 ~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~------~~~~~~---~----------- 146 (195)
T cd02007 87 MAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSI------SPNVGT---P----------- 146 (195)
T ss_pred HHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCccc------CCCCCC---H-----------
Confidence 46788888889999999999999999999999999999999999999998652 221110 0
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
..+++++||.+..++||||++++.++++++++ .++|++|
T Consensus 147 ---------------------------------------~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~~~P~~I 185 (195)
T cd02007 147 ---------------------------------------GNLFEELGFRYIGPVDGHNIEALIKVLKEVKD--LKGPVLL 185 (195)
T ss_pred ---------------------------------------HHHHHhcCCCccceECCCCHHHHHHHHHHHHh--CCCCEEE
Confidence 12377899998866899999999999999987 6899999
Q ss_pred EEEccCCCCc
Q 009809 161 HVVTEKGRGY 170 (525)
Q Consensus 161 ~v~t~kg~g~ 170 (525)
+++|+||+||
T Consensus 186 ~~~T~kg~g~ 195 (195)
T cd02007 186 HVVTKKGKGY 195 (195)
T ss_pred EEEEecccCc
Confidence 9999999996
No 52
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.81 E-value=7.3e-21 Score=192.57 Aligned_cols=120 Identities=34% Similarity=0.583 Sum_probs=92.5
Q ss_pred CCCCeEEEEEcccccccchhHHHHHhccccCC-CEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHH
Q 009809 9 GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELRE 87 (525)
Q Consensus 9 ~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l-~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (525)
..+++|||++|||+++||++|||+.+|++++| ||++|+++|+.+ +||.+..+ +
T Consensus 141 ~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q------~dg~~~~~--~------------------ 194 (332)
T PF00456_consen 141 IIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQ------IDGPTDIV--F------------------ 194 (332)
T ss_dssp TTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEE------TTEEGGGT--H------------------
T ss_pred cccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcc------cCCCcccc--c------------------
Confidence 34789999999999999999999999999985 589999889865 56654421 1
Q ss_pred HHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCC
Q 009809 88 VAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 167 (525)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg 167 (525)
.+++.+ .|++|||+++.++||||+++|.+|++.+++. .++|++|.++|+||
T Consensus 195 ------------~~~~~~----------------k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 195 ------------SEDIAK----------------KFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKG 245 (332)
T ss_dssp ------------HSHHHH----------------HHHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TT
T ss_pred ------------chHHHH----------------HHHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEe
Confidence 122222 3899999999545999999999999999884 48999999999999
Q ss_pred CCchhhhhccccccCCC
Q 009809 168 RGYPYAEKAADKYHGVA 184 (525)
Q Consensus 168 ~g~~~~~~~~~~~h~~~ 184 (525)
+|.++.+ +..++|+.+
T Consensus 246 ~G~~~~e-~~~~~Hg~~ 261 (332)
T PF00456_consen 246 KGVPFME-GTAKWHGSP 261 (332)
T ss_dssp TTSTTTT-TSGGGTSS-
T ss_pred cCchhhc-ccchhhccC
Confidence 9998876 457899975
No 53
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.77 E-value=8.8e-19 Score=172.98 Aligned_cols=127 Identities=37% Similarity=0.631 Sum_probs=100.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|+|.++.+++++|||++|||++++|++||+|++|+++++| +++|++||++.+ ++..... .
T Consensus 118 Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~------~~~~~~~--~----------- 178 (255)
T cd02012 118 ALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQI------DGPTDDI--L----------- 178 (255)
T ss_pred HHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccc------cCcHhhc--c-----------
Confidence 5677778889999999999999999999999999999986 777777777542 2211100 0
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
...++ ..++++|||+++ .+||||+++|.++++++++. .++|++|
T Consensus 179 ------------------~~~~~----------------~~~~~a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I 222 (255)
T cd02012 179 ------------------FTEDL----------------AKKFEAFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLI 222 (255)
T ss_pred ------------------CchhH----------------HHHHHHcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEE
Confidence 01111 235899999998 79999999999999999873 2789999
Q ss_pred EEEccCCCCchhhhhccccccCCC
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVA 184 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~ 184 (525)
+++|.||+|+++.+ +...+|+.+
T Consensus 223 ~~~t~kg~g~~~~e-~~~~~H~~~ 245 (255)
T cd02012 223 IAKTIKGKGVPFME-NTAKWHGKP 245 (255)
T ss_pred EEEeecccccCccC-CCccccCCC
Confidence 99999999999877 456789754
No 54
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.72 E-value=1e-17 Score=168.42 Aligned_cols=126 Identities=25% Similarity=0.381 Sum_probs=94.8
Q ss_pred CcccccccCCCC-eEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 1 MAVGRDLKGRKN-NVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 1 ~A~a~~l~~~~~-~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
+|+|.|+++.+. +++||+|||+.++|.|||+||+|+.|++|++|+|+||++.+ + ++. . . ++
T Consensus 148 ~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAi------S--vp~-~-~-------q~- 209 (358)
T COG1071 148 AALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAI------S--VPR-S-R-------QT- 209 (358)
T ss_pred HHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCcee------e--cch-h-h-------cc-
Confidence 378999999555 99999999999999999999999999999999999999652 1 010 0 0 00
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCC
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGP 157 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P 157 (525)
..+.+ .....++|+..+ .|||+|+.+++++.++|.+. ...+|
T Consensus 210 -------------------~~~~~----------------~~ra~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GP 253 (358)
T COG1071 210 -------------------AAEII----------------AARAAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGP 253 (358)
T ss_pred -------------------cchhH----------------HhhhhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCC
Confidence 00011 112677899988 78999999999877655432 26789
Q ss_pred EEEEEEccCCCCchhhhhcccccc
Q 009809 158 VLIHVVTEKGRGYPYAEKAADKYH 181 (525)
Q Consensus 158 ~~i~v~t~kg~g~~~~~~~~~~~h 181 (525)
++|++.|.+-.||+.++ ++.+|-
T Consensus 254 tLIE~~tYR~~~HS~sD-d~~~YR 276 (358)
T COG1071 254 TLIEAVTYRYGGHSTSD-DPSKYR 276 (358)
T ss_pred EEEEEEEeecCCCCCCC-CccccC
Confidence 99999999999998763 445554
No 55
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.69 E-value=5.6e-15 Score=155.56 Aligned_cols=249 Identities=21% Similarity=0.237 Sum_probs=179.5
Q ss_pred CCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCC---eEEEEcCCCCCCCCCCCCcchhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTHCGSFDV 319 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~p---vvi~~~~~G~~g~~G~tH~~~~d~ 319 (525)
+-|++++.+|.-++.+|.|++..|.|.++....+.+.++.|.++ .++|.... |++++++.|..+ ....|+.+-.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~-s~ay~Gv~GGlviv~aDDpg~~S--Sqneqdsr~y 134 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLM-SLAYAGVTGGLVIVVADDPGMHS--SQNEQDSRAY 134 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhh-hhhhcCccccEEEEEccCCCccc--ccchhHhHHH
Confidence 78999999999999999999999999999999999999999965 56666654 666667777422 2334444444
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHhcC---CCcEEEEecCCCC---CCcc-----cCCC-CC--CCccccCceE--
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAAID---DRPSCFRYPRGNG---IGVE-----LPPG-NK--GIPLEVGKGR-- 383 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~---~~Pv~i~~~~~~~---~~~~-----~p~~-~~--~~~~~~g~~~-- 383 (525)
+... .+-|+.|+|+||++++++++|+.+ +.||++|...... ..++ .+.. .. .+.-..++..
T Consensus 135 ~~~a---~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 135 GKFA---LIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHhc---CceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 4444 455999999999999999999854 4699998643210 0000 0000 00 0111111110
Q ss_pred -----------------------------EEeeC--CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHH
Q 009809 384 -----------------------------ILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 432 (525)
Q Consensus 384 -----------------------------~l~~g--~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~ 432 (525)
.+..+ .++.||+.|..+..+.+|.+.| |++..++.+-+.+|+|.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCCCHHH
Confidence 00113 6899999999999999997655 9999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhh
Q 009809 433 IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 433 i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 512 (525)
|++++++.++|+||||... =+...+.+.+.+.+ .++...|..+.+.+ .+..|+++.|..+|.++++
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g-----~~v~v~GKd~gllP--------~~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAG-----LPVEVHGKDEGLLP--------MEGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcC-----CceEeecccccccC--------cccccCHHHHHHHHHHHhC
Confidence 9999999999999999864 35666666666654 34445564444333 2356899999999999997
Q ss_pred cc
Q 009809 513 QT 514 (525)
Q Consensus 513 ~~ 514 (525)
..
T Consensus 355 ~~ 356 (640)
T COG4231 355 KE 356 (640)
T ss_pred cc
Confidence 74
No 56
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.68 E-value=2.8e-17 Score=165.40 Aligned_cols=118 Identities=30% Similarity=0.402 Sum_probs=89.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCC-cCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~-~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|+|.++++.+.+++|++|||+.++|.+||+||+|+.|++|++|||+||++. |+|++...
T Consensus 114 A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~-------------------- 173 (300)
T PF00676_consen 114 ALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQT-------------------- 173 (300)
T ss_dssp HHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHC--------------------
T ss_pred hHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccc--------------------
Confidence 678899999999999999999999999999999999999999999999954 22211100
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPV 158 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~ 158 (525)
..+....+.+++|++.+ .|||+|+.+++++.+.|.++ ..++|+
T Consensus 174 ----------------------------------~~~~~~~~a~~~gip~~-~VDG~D~~av~~a~~~A~~~~R~g~gP~ 218 (300)
T PF00676_consen 174 ----------------------------------ASPDIADRAKGYGIPGI-RVDGNDVEAVYEAAKEAVEYARAGKGPV 218 (300)
T ss_dssp ----------------------------------SSSTSGGGGGGTTSEEE-EEETTSHHHHHHHHHHHHHHHHTTT--E
T ss_pred ----------------------------------cccchhhhhhccCCcEE-EECCEeHHHHHHHHHHHHHHHhcCCCCE
Confidence 01111234788999988 89999999998877766432 268899
Q ss_pred EEEEEccCCCCchhhh
Q 009809 159 LIHVVTEKGRGYPYAE 174 (525)
Q Consensus 159 ~i~v~t~kg~g~~~~~ 174 (525)
+|++.|.+-.||...+
T Consensus 219 lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 219 LIEAVTYRLRGHSESD 234 (300)
T ss_dssp EEEEEE--SS-SSTTS
T ss_pred EEEEeeccCCCCCCCC
Confidence 9999999999998654
No 57
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.66 E-value=1.4e-14 Score=149.18 Aligned_cols=219 Identities=14% Similarity=0.176 Sum_probs=154.5
Q ss_pred HHHhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcch
Q 009809 237 FLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGS 316 (525)
Q Consensus 237 ~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~ 316 (525)
+..+....|+++ =+|+++++++.|++++|.|.+++|+++.+..+.+.+ ..++++++|+++....+++..+.-+++..+
T Consensus 42 ~~~~~~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq 119 (365)
T COG0674 42 WKAKVGGVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTETPLVIVVAQRPLPSTGLPIKGDQ 119 (365)
T ss_pred HHhhcCcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccCCeEEEEeccCcCCCcccccccH
Confidence 333344556665 799999999999999999999999999999998884 678889999998886666444444699999
Q ss_pred hhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCC---CcEEEEecCCC--------------CCCcccCCCCC------
Q 009809 317 FDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD---RPSCFRYPRGN--------------GIGVELPPGNK------ 373 (525)
Q Consensus 317 ~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~---~Pv~i~~~~~~--------------~~~~~~p~~~~------ 373 (525)
.|+.+.|. .++.+++-+|.||++++...|++..+ -|+++..+... .....+++...
T Consensus 120 ~D~~~~r~-~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 198 (365)
T COG0674 120 SDLMAARD-TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDP 198 (365)
T ss_pred HHHHHHHc-cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCC
Confidence 99988887 58888888899999999999987543 48776543210 00000000000
Q ss_pred CCccccC--------------------------------------ce----EEEe-eCCcEEEEEechhHHHHHHHHHH-
Q 009809 374 GIPLEVG--------------------------------------KG----RILI-EGERVALLGYGTAVQSCLAASAL- 409 (525)
Q Consensus 374 ~~~~~~g--------------------------------------~~----~~l~-~g~dv~iva~G~~~~~a~~Aa~~- 409 (525)
..+...| +. .+.. ++++++||+||+....+.+++..
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~ 278 (365)
T COG0674 199 SPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDL 278 (365)
T ss_pred CCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHH
Confidence 0000000 00 0001 46789999999888877777665
Q ss_pred HHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHH
Q 009809 410 LESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHV 458 (525)
Q Consensus 410 L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v 458 (525)
++++|+|++++++++++|||.+.|++++++.+.+.|++-.. .|+++..+
T Consensus 279 ~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~~l 328 (365)
T COG0674 279 LRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAEPL 328 (365)
T ss_pred HHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchhhH
Confidence 45789999999999999999999999998877444455433 35554443
No 58
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.64 E-value=4.5e-14 Score=164.24 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=176.1
Q ss_pred CeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 323 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~ 323 (525)
.|+++ =+|+++++++.|++.+|.|.++.|.++.+..+.+.+.. ++.+++|+|+....+++.+..+..|.+..|+...|
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l~~-~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNMYK-IAGELLPCVFHVSARAIAAHALSIFGDHQDVMAAR 130 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHHHH-HHhccCCEEEEEecCCCCCCCCccCCCchHHHHhh
Confidence 35555 69999999999999999999999999999999898754 44469998888765553333346677777776667
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCC----CCCCcccCCC----------C----------C---
Q 009809 324 CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG----NGIGVELPPG----------N----------K--- 373 (525)
Q Consensus 324 ~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~----~~~~~~~p~~----------~----------~--- 373 (525)
. -|+.+++|+++||+.++...|+.. ...|++...+-- ......+++. . +
T Consensus 131 ~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p 209 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHP 209 (1165)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCC
Confidence 6 689999999999999999988753 456887655421 0001000000 0 0
Q ss_pred ---------CCcc--------------------------ccCce-----EEEeeCCcEEEEEechhHHHHHHHHHHHHhC
Q 009809 374 ---------GIPL--------------------------EVGKG-----RILIEGERVALLGYGTAVQSCLAASALLESN 413 (525)
Q Consensus 374 ---------~~~~--------------------------~~g~~-----~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~ 413 (525)
+..+ -.|+. +.-.++++++||++|+....+.+|++.|+++
T Consensus 210 ~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~ 289 (1165)
T TIGR02176 210 HVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK 289 (1165)
T ss_pred ceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc
Confidence 0000 01211 1112468999999999999999999999999
Q ss_pred CCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCCCC-C----CHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCC
Q 009809 414 GLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSI-G----GFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 487 (525)
Q Consensus 414 Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~~~-g----glg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g 487 (525)
|++|++|+++.+||||.+.|.+.+ ++.|+|+|+|.+.. | .|..+|...+...+- ..+. .++. .|+..|
T Consensus 290 G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~~~---~~~~-v~~~--~~Glgg 363 (1165)
T TIGR02176 290 GEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEMGE---AMPV-ILGG--RYGLGS 363 (1165)
T ss_pred CCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhccC---CCCE-EEEE--EECCCC
Confidence 999999999999999999998877 68899999999852 2 477788777754310 1122 2221 222211
Q ss_pred ChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 488 SPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 488 ~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
..++++.|.+.++.+.
T Consensus 364 --------~~~tp~~i~~i~~~l~ 379 (1165)
T TIGR02176 364 --------KEFTPAMVKAVFDNLS 379 (1165)
T ss_pred --------CCCCHHHHHHHHHHHh
Confidence 2367888888777764
No 59
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.63 E-value=4.6e-16 Score=159.52 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=88.8
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCc-CCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVS-LPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~-~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
+|+|.++++.+.+++||+|||+++||.+||+||+|+.|++|++|||+||++.. +++.... .
T Consensus 150 ~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~-~----------------- 211 (362)
T PLN02269 150 LAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAA-K----------------- 211 (362)
T ss_pred HHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhc-c-----------------
Confidence 47888999999999999999999999999999999999999999999998542 1110000 0
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc-CCCCCE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT-KTTGPV 158 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~-~~~~P~ 158 (525)
...+. -.+++++.+ .|||+|+.+++.+++.|.+. ..++|+
T Consensus 212 --------------------~~~~~------------------~~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~~gP~ 252 (362)
T PLN02269 212 --------------------SPAYY------------------KRGDYVPGL-KVDGMDVLAVKQACKFAKEHALSNGPI 252 (362)
T ss_pred --------------------chHHH------------------HhhcCCCeE-EECCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 00000 012345455 78999999999999887652 127899
Q ss_pred EEEEEccCCCCchhhh
Q 009809 159 LIHVVTEKGRGYPYAE 174 (525)
Q Consensus 159 ~i~v~t~kg~g~~~~~ 174 (525)
+|++.|.+.+||...+
T Consensus 253 lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 253 VLEMDTYRYHGHSMSD 268 (362)
T ss_pred EEEEecCcCCCcCCCC
Confidence 9999999999997543
No 60
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.62 E-value=5.9e-16 Score=161.77 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=88.7
Q ss_pred cccccccC-------CCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCC-cCCCCCCCCCCCcchhhhHHH
Q 009809 2 AVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPPVGALSSAL 73 (525)
Q Consensus 2 A~a~~l~~-------~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~-~~~~~~~~g~~~~~g~~~~~l 73 (525)
|+|.++++ ++++|+||+|||++++|.+||+||+|+.|++|++|||+||++. +++..... .
T Consensus 207 A~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t---~--------- 274 (433)
T PLN02374 207 AFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT---S--------- 274 (433)
T ss_pred HHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeecc---C---------
Confidence 45556654 5899999999999999999999999999999999999999853 22221100 0
Q ss_pred hhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHH----HHHh
Q 009809 74 SRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI----LEEV 149 (525)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~a----l~~a 149 (525)
.++....+++||+..+ .|||+|+.+++++ ++++
T Consensus 275 ------------------------------------------~~dia~~A~a~G~~~~-~VDG~D~~av~~a~~~A~~~A 311 (433)
T PLN02374 275 ------------------------------------------DPEIWKKGPAFGMPGV-HVDGMDVLKVREVAKEAIERA 311 (433)
T ss_pred ------------------------------------------CCCHHHHHHhcCCcEE-EECCCCHHHHHHHHHHHHHHH
Confidence 0111223788999999 7999999988854 5555
Q ss_pred hhcCCCCCEEEEEEccCCCCchhh
Q 009809 150 KNTKTTGPVLIHVVTEKGRGYPYA 173 (525)
Q Consensus 150 ~~~~~~~P~~i~v~t~kg~g~~~~ 173 (525)
++ .++|++|++.|++.+||...
T Consensus 312 r~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 312 RR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred HH--cCCCEEEEEEEEecCCcCCC
Confidence 65 68899999999999999765
No 61
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.60 E-value=1.2e-15 Score=156.04 Aligned_cols=107 Identities=25% Similarity=0.351 Sum_probs=84.1
Q ss_pred CCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCC-CcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHH
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREV 88 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~-~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~ 88 (525)
++++|+||+|||++++|.+||+||+|+.|++|++|||+||++ +++++....
T Consensus 156 ~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~---------------------------- 207 (341)
T CHL00149 156 PLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRST---------------------------- 207 (341)
T ss_pred CCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhee----------------------------
Confidence 689999999999999999999999999999999999999994 332211000
Q ss_pred HhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHH----HHHhhhcCCCCCEEEEEEc
Q 009809 89 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI----LEEVKNTKTTGPVLIHVVT 164 (525)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~a----l~~a~~~~~~~P~~i~v~t 164 (525)
. .++...++++||+..+ .|||+|..+++++ ++++++ .++|++|++.|
T Consensus 208 ----------~----------------~~d~a~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~t 258 (341)
T CHL00149 208 ----------S----------------IPEIHKKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALT 258 (341)
T ss_pred ----------C----------------CccHHHHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEE
Confidence 0 0111234788999998 7999999877754 445555 68899999999
Q ss_pred cCCCCchhh
Q 009809 165 EKGRGYPYA 173 (525)
Q Consensus 165 ~kg~g~~~~ 173 (525)
.+.+||+..
T Consensus 259 yR~~gHs~~ 267 (341)
T CHL00149 259 YRFRGHSLA 267 (341)
T ss_pred ecCCCcCCC
Confidence 999999864
No 62
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.58 E-value=2.2e-15 Score=146.88 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=89.4
Q ss_pred cccccccC-----CCCeEEEEEccccc-ccchhHHHHHhccccCCC---EEEEEECCCCCc-CCCCCCCCCCCcchhhhH
Q 009809 2 AVGRDLKG-----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVS-LPTATLDGPIPPVGALSS 71 (525)
Q Consensus 2 A~a~~l~~-----~~~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~---l~~iv~~N~~~~-~~~~~~~g~~~~~g~~~~ 71 (525)
|+|.++++ .+.+++||+|||++ +||.+||+||+|+.|++| +++||+||++.. +|.+. ..
T Consensus 126 A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~--~~--------- 194 (265)
T cd02016 126 TRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRD--SR--------- 194 (265)
T ss_pred HHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHH--hc---------
Confidence 66777777 47899999999996 699999999999999998 999999998542 21110 00
Q ss_pred HHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhh
Q 009809 72 ALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN 151 (525)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~ 151 (525)
+ .... ..+++++|++.+ .+||+|+.+++++.+.|.+
T Consensus 195 ------~---------------------~~~~----------------~~~a~~~gip~~-~VdG~D~~aV~~a~~~A~~ 230 (265)
T cd02016 195 ------S---------------------SPYC----------------TDVAKMIGAPIF-HVNGDDPEAVVRATRLALE 230 (265)
T ss_pred ------c---------------------cccH----------------HHHHeecCCCEE-EEcCCCHHHHHHHHHHHHH
Confidence 0 0000 123678899988 8999999999988776644
Q ss_pred c--CCCCCEEEEEEccCCCCchhh
Q 009809 152 T--KTTGPVLIHVVTEKGRGYPYA 173 (525)
Q Consensus 152 ~--~~~~P~~i~v~t~kg~g~~~~ 173 (525)
+ ..++|++|++.|.+-+||...
T Consensus 231 ~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 231 YRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred HHHhcCCCEEEEEEEecCCCCCCc
Confidence 2 267899999999999999754
No 63
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.58 E-value=3.5e-15 Score=144.86 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=90.0
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|+|.++++.+.+++++.|||+.|+|+++||+|+|+.|+||++|||+||.+-.. .+. + |++.
T Consensus 177 ia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMG-------Ts~---------~--Rasa 238 (394)
T KOG0225|consen 177 IAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMG-------TSA---------E--RASA 238 (394)
T ss_pred HHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccC-------cch---------h--hhhc
Confidence 588999999999999999999999999999999999999999999999985421 100 0 0000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPV 158 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~ 158 (525)
.. +.|.|+-. ++.+ .|||.|+-++++|.++|+++ ...+|+
T Consensus 239 -------------------~t------eyykRG~y------------iPGl-~VdGmdvlaVr~a~KfA~~~~~~g~GPi 280 (394)
T KOG0225|consen 239 -------------------ST------EYYKRGDY------------IPGL-KVDGMDVLAVREATKFAKKYALEGKGPI 280 (394)
T ss_pred -------------------Ch------HHHhccCC------------CCce-EECCcchhhHHHHHHHHHHHHhcCCCCE
Confidence 01 12222211 2233 58999999999999999876 247899
Q ss_pred EEEEEccCCCCchhhh
Q 009809 159 LIHVVTEKGRGYPYAE 174 (525)
Q Consensus 159 ~i~v~t~kg~g~~~~~ 174 (525)
++++.|.+-.||+-++
T Consensus 281 lmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 281 LMEMDTYRYHGHSMSD 296 (394)
T ss_pred EEEEeeeeecccccCC
Confidence 9999999988887543
No 64
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.57 E-value=5e-15 Score=151.78 Aligned_cols=116 Identities=27% Similarity=0.408 Sum_probs=91.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCc-CCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVS-LPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~-~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|+|.++.+++++|+||+|||++++|.++|+||+|++|++|++|||+||++.. ++...
T Consensus 135 Ala~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~---------------------- 192 (341)
T TIGR03181 135 AYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSK---------------------- 192 (341)
T ss_pred HHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhh----------------------
Confidence 6778888999999999999999999999999999999999999999998541 11100
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHH----hhhcCCCC
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE----VKNTKTTG 156 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~----a~~~~~~~ 156 (525)
+ ...++...++++||+.++ .+||+|..+++.+++. +++ .++
T Consensus 193 ---------------------~-----------~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~--~~g 237 (341)
T TIGR03181 193 ---------------------Q-----------TAAPTLAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARS--GGG 237 (341)
T ss_pred ---------------------h-----------hCCcCHHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHc--CCC
Confidence 0 001122345889999998 7999999877665554 444 678
Q ss_pred CEEEEEEccCCCCchhhh
Q 009809 157 PVLIHVVTEKGRGYPYAE 174 (525)
Q Consensus 157 P~~i~v~t~kg~g~~~~~ 174 (525)
|++|++.|.+-+||...+
T Consensus 238 P~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 238 PTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred CEEEEEEeecCCCCCCCC
Confidence 999999999999997643
No 65
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.57 E-value=2.7e-12 Score=140.49 Aligned_cols=412 Identities=19% Similarity=0.187 Sum_probs=250.7
Q ss_pred CeEEEEEcccc-cccchhHHHHHhccccCCC---EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHH
Q 009809 12 NNVVAVIGDGA-MTAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELRE 87 (525)
Q Consensus 12 ~~v~~~~GDG~-~~eG~~~Ealn~A~~~~l~---l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (525)
...+++=||++ ..+|+++|.||++..|+.+ .++||.||+.-.++.. -++.+..
T Consensus 648 vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p-~~~Rss~---------------------- 704 (1228)
T PRK12270 648 VLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAP-ESSRSSE---------------------- 704 (1228)
T ss_pred eeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCc-cccccch----------------------
Confidence 45677889999 5899999999999999988 9999999984322110 0111000
Q ss_pred HHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEEEEEEcc
Q 009809 88 VAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTE 165 (525)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~i~v~t~ 165 (525)
..-+ +++.++...+ .|||.|+++++++.+.|.++ .-++|++|.+.|+
T Consensus 705 -----------y~td-------------------~ak~~~~Pif-hVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcY 753 (1228)
T PRK12270 705 -----------YATD-------------------VAKMIQAPIF-HVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCY 753 (1228)
T ss_pred -----------hhHH-------------------HHhhcCCCEE-eECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 0011 2344555555 68999999999988877654 2578999999999
Q ss_pred CCCCchhhhh----ccccccCCCC-------------------------------------CC--------CCC------
Q 009809 166 KGRGYPYAEK----AADKYHGVAK-------------------------------------FD--------PAT------ 190 (525)
Q Consensus 166 kg~g~~~~~~----~~~~~h~~~~-------------------------------------~~--------~~~------ 190 (525)
+.+||-..++ .|..|.-... |+ +..
T Consensus 754 RrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~ 833 (1228)
T PRK12270 754 RRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVE 833 (1228)
T ss_pred eecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 9999943221 1222211110 10 000
Q ss_pred -CcccCC---------------------C------C---------------CcccHHHHHHH--HHHHHHhcCCCEEEEe
Q 009809 191 -GKQFKS---------------------S------A---------------RTQSYTTYFAE--ALIAEAEVDKDVVAIH 225 (525)
Q Consensus 191 -~~~~~~---------------------~------~---------------~~~~~~~a~~~--~l~~~~~~d~~~v~~~ 225 (525)
.....+ + + ....| +|++ ++-.++.+...|.+.+
T Consensus 834 ~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDW--a~gEllAfGsLl~eG~~VRL~G 911 (1228)
T PRK12270 834 SDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDW--AFGELLAFGSLLLEGTPVRLSG 911 (1228)
T ss_pred ccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhcCceeeeec
Confidence 000000 0 0 00111 1222 2334445555666777
Q ss_pred cCCCCCcch---------------HHHHHhC--CCC--eeeccchHHHHHHHHHHHhcCC--CeEEEee-chhhH---HH
Q 009809 226 AAMGGGTGL---------------NLFLRRF--PTR--CFDVGIAEQHAVTFAAGLACEG--LKPFCAI-YSSFM---QR 280 (525)
Q Consensus 226 ~D~~~s~~l---------------~~~~~~~--p~r--~~~~gIaE~~~~~~a~G~A~~G--~~pi~~t-~~~F~---~~ 280 (525)
.|...++-. .++..-- ..+ +.|..++|.+++|.=-|.|... ...+++. |++|. +-
T Consensus 912 QDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQt 991 (1228)
T PRK12270 912 QDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQT 991 (1228)
T ss_pred cccCCcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHH
Confidence 775532211 1222221 233 4599999999999999999984 6777777 88885 78
Q ss_pred HHHHHHHHhh-c--CCCCeEEEEcCCCCCCCCCCCCcch--hhhhhhhcCCCcEEEccCCHHHHHHHHH-HHHhcCCCcE
Q 009809 281 AYDQVVHDVD-L--QKLPVRFAMDRAGLVGADGPTHCGS--FDVTFMACLPNMVVMAPSDEAELFHMVA-TAAAIDDRPS 354 (525)
Q Consensus 281 a~dqi~~~~~-~--~~~pvvi~~~~~G~~g~~G~tH~~~--~d~~~~~~ipg~~v~~P~~~~e~~~~~~-~a~~~~~~Pv 354 (525)
..|+++...- + ++..|++..+| |+ -..||-|++- |-...++.-.||+|..|++|...+-+++ +++....+|.
T Consensus 992 iIDefIss~e~KWgQ~S~vvlLLPH-Gy-EGQGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPL 1069 (1228)
T PRK12270 992 IIDEFISSGEAKWGQRSGVVLLLPH-GY-EGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPL 1069 (1228)
T ss_pred HHHHHHhhhHhhhccccceEEEccC-Cc-CCCCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCe
Confidence 8888665432 2 45678888776 43 2358899974 4444556678999999999999999996 5555567899
Q ss_pred EEEecCCCCC-CcccCCCCCCCccccCceE-EEee-----C--CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEecccc
Q 009809 355 CFRYPRGNGI-GVELPPGNKGIPLEVGKGR-ILIE-----G--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFC 425 (525)
Q Consensus 355 ~i~~~~~~~~-~~~~p~~~~~~~~~~g~~~-~l~~-----g--~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l 425 (525)
++..+|.+.. +..+ .....|.-|++. ++.+ + -+=+|+++|-.++...+.-+ +...-++.|+++-.|
T Consensus 1070 vVfTPKSmLR~KaA~---S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R~--k~~~~d~AIvRvEQL 1144 (1228)
T PRK12270 1070 VVFTPKSMLRLKAAV---SDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARRE--KDGRDDTAIVRVEQL 1144 (1228)
T ss_pred EEEChHHhhcchhhc---CCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHHH--hcCCCceEEEEhhhh
Confidence 9988886521 1000 011122334432 2221 1 23469999999988775532 223457999999999
Q ss_pred ccCcHHHHHHHhccC----CeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCC-CCCh
Q 009809 426 KPLDHALIRSLAKSH----EVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HGSP 489 (525)
Q Consensus 426 ~P~d~~~i~~~~~~~----~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~-~g~~ 489 (525)
.|||.+.|.+.+..+ ..+.+-||.. .|.|. .+.-.|.+. +....++++++=+..=.+ .|+.
T Consensus 1145 yP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~-f~~~~l~~~--l~~~~~lr~VsRpasasPAtGs~ 1211 (1228)
T PRK12270 1145 YPLPRAELREALARYPNATEVVWVQEEPANQGAWP-FMALNLPEL--LPDGRRLRRVSRPASASPATGSA 1211 (1228)
T ss_pred CCCCHHHHHHHHHhCCCcceeEEeccCcccCCCch-hhhhhhHhh--ccCCCCceEecCCcccCCCccch
Confidence 999999998887653 4556666654 68775 222223322 111355667764433333 3443
No 66
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.57 E-value=5e-15 Score=150.25 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=91.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+|.++++++++|+|++|||++++|.+||+||+|+.+++|++|||.||++.. .+ . ..
T Consensus 123 a~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~-s~--------~---~~----------- 179 (315)
T TIGR03182 123 AFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAM-GT--------S---VE----------- 179 (315)
T ss_pred HHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccc-cC--------C---HH-----------
Confidence 5666777899999999999999999999999999999999999999997431 11 0 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~ 159 (525)
.+ ...++...+.++||++.+ .|||+|+.+++++++.|.+. ..++|++
T Consensus 180 -------------------~~-----------~~~~~~a~~A~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 228 (315)
T TIGR03182 180 -------------------RS-----------SSVTDLYKRGESFGIPGE-RVDGMDVLAVREAAKEAVERARSGKGPIL 228 (315)
T ss_pred -------------------HH-----------hCCcCHHHHHHhCCCCEE-EECCCCHHHHHHHHHHHHHHHHccCCCEE
Confidence 00 001122345788999988 79999999888877766432 2578999
Q ss_pred EEEEccCCCCchhh
Q 009809 160 IHVVTEKGRGYPYA 173 (525)
Q Consensus 160 i~v~t~kg~g~~~~ 173 (525)
|++.|.+..||...
T Consensus 229 Ie~~t~R~~gHs~~ 242 (315)
T TIGR03182 229 LEMKTYRFRGHSMS 242 (315)
T ss_pred EEEeCCcCCCCCCC
Confidence 99999999999754
No 67
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.56 E-value=4.4e-15 Score=149.53 Aligned_cols=117 Identities=27% Similarity=0.324 Sum_probs=91.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+|.++.+++++|+|++|||++++|.++|+||+|+++++|++|||+||++.. .+ . ..
T Consensus 117 a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i-~~--------~---~~----------- 173 (293)
T cd02000 117 ALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAI-ST--------P---TS----------- 173 (293)
T ss_pred HHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeec-cC--------C---HH-----------
Confidence 5677888899999999999999999999999999999999999999997431 11 0 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~ 159 (525)
.+ .-.++...+++++|+.+. .+||+|+.+++.+++.|.+. ..++|++
T Consensus 174 -------------------~~-----------~~~~~~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~~P~l 222 (293)
T cd02000 174 -------------------RQ-----------TAGTSIADRAAAYGIPGI-RVDGNDVLAVYEAAKEAVERARAGGGPTL 222 (293)
T ss_pred -------------------HH-----------hCCccHHHHHHhCCCCEE-EECCCCHHHHHHHHHHHHHHHHccCCCEE
Confidence 00 001122345788999988 79999999988877766532 2578999
Q ss_pred EEEEccCCCCchh
Q 009809 160 IHVVTEKGRGYPY 172 (525)
Q Consensus 160 i~v~t~kg~g~~~ 172 (525)
|++.|.+.+||+.
T Consensus 223 Iev~~~r~~gHs~ 235 (293)
T cd02000 223 IEAVTYRLGGHST 235 (293)
T ss_pred EEEEEeccCCCCC
Confidence 9999999999974
No 68
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.47 E-value=6.9e-12 Score=143.93 Aligned_cols=296 Identities=17% Similarity=0.134 Sum_probs=193.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCE----EEEecCCCCC--cchH-HHHHhC-----CCCeeeccchHHHHHHHHHHHh----
Q 009809 200 TQSYTTYFAEALIAEAEVDKDV----VAIHAAMGGG--TGLN-LFLRRF-----PTRCFDVGIAEQHAVTFAAGLA---- 263 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~----v~~~~D~~~s--~~l~-~~~~~~-----p~r~~~~gIaE~~~~~~a~G~A---- 263 (525)
..+-.+|+.+.+.+..++|.+. --+-.-+.|+ ++++ .|.+.- -+-+++.+++|..++.++.|++
T Consensus 19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~ 98 (1159)
T PRK13030 19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEA 98 (1159)
T ss_pred eeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccccc
Confidence 4566789998888877666531 1122234444 2332 233221 1378999999999999999999
Q ss_pred -----cCCCeEEEeechhhHHHHHHHHHHHhhcCCC----C-eEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEcc
Q 009809 264 -----CEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL----P-VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAP 333 (525)
Q Consensus 264 -----~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~----p-vvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P 333 (525)
+.|.+.+++...+++.++.|.++ .+++... - |++++++.|..+ ..+-|+++....+..|| |+.|
T Consensus 99 ~~~~~~~Gv~~l~~~K~~GvnvaaD~l~-~~n~~G~~~~GG~v~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~P 172 (1159)
T PRK13030 99 DPERTVDGVFAMWYGKGPGVDRAGDALK-HGNAYGSSPHGGVLVVAGDDHGCVS--SSMPHQSDFALIAWHMP---VLNP 172 (1159)
T ss_pred cCCccccceEEEEecCcCCcccchhHHH-HHHhhcCCCCCcEEEEEecCCCCcc--CcCHHHHHHHHHHcCCc---eeCC
Confidence 77888899999999999999975 3444444 2 555667777522 24555565555666666 9999
Q ss_pred CCHHHHHHHHHHHHhc---CCCcEEEEecCCC------C---C--C-cccCC-CCC-C----Cccc--------------
Q 009809 334 SDEAELFHMVATAAAI---DDRPSCFRYPRGN------G---I--G-VELPP-GNK-G----IPLE-------------- 378 (525)
Q Consensus 334 ~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~~------~---~--~-~~~p~-~~~-~----~~~~-------------- 378 (525)
+|+||++++.+++++. .+-||.++..... + + . ...|. ... . ..+.
T Consensus 173 s~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~r 252 (1159)
T PRK13030 173 ANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAK 252 (1159)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHH
Confidence 9999999999999875 3569888753211 0 0 0 00111 000 0 0000
Q ss_pred ------------cCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCC-----CcEEEEeccccccCcHHHHHHHhccCC
Q 009809 379 ------------VGKGRILIEGERVALLGYGTAVQSCLAASALLESNG-----LRLTVADARFCKPLDHALIRSLAKSHE 441 (525)
Q Consensus 379 ------------~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~G-----i~v~vi~~~~l~P~d~~~i~~~~~~~~ 441 (525)
+.+..+-.++.++.||++|.....++||.+.|...+ +.++|+++-..+|||.+.+.+++++.+
T Consensus 253 l~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d 332 (1159)
T PRK13030 253 LPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLE 332 (1159)
T ss_pred HHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCC
Confidence 011110012467999999999999999998874322 247889998999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCc----cCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 442 VLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDR----YIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 442 ~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~----~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
.|+||||... =+...|.+.+.+... ..++..+|..+. +.+ ..-.|+++.|.+++.+.++.
T Consensus 333 ~VlVVEE~~p-~iE~Qlk~~l~~~~~---~~~~~v~GK~~~~G~pllp--------~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 333 EILVIEEKRP-VIEQQIKDYLYNRPG---GARPRVVGKHDEDGAPLLS--------ELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred EEEEEeCCch-HHHHHHHHHHHhccc---cCCceeEEEECCCCCcCCC--------CcCCcCHHHHHHHHHHHHhc
Confidence 9999999863 245555555554432 113344565431 222 12458999999999887754
No 69
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.43 E-value=1.2e-13 Score=132.94 Aligned_cols=126 Identities=24% Similarity=0.322 Sum_probs=95.2
Q ss_pred cccccccCCC-CeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCC-CCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 2 AVGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK-QVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 2 A~a~~l~~~~-~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~-~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
|+|.|++..+ +.+||++|||+.+||.+|.++|+|+.+..|++|||-||+ ..|+|+++.-+.
T Consensus 206 aYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~----------------- 268 (432)
T KOG1182|consen 206 AYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRG----------------- 268 (432)
T ss_pred hhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcC-----------------
Confidence 6778877766 899999999999999999999999999999999999998 444555432111
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCC
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGP 157 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P 157 (525)
+-+ ...-.++|++.| +|||+|..+++.|.+.|++. ...+|
T Consensus 269 ---------------------------------DGI----a~kG~aYGi~sI-RVDGnD~lAvYnA~k~ARe~av~e~rP 310 (432)
T KOG1182|consen 269 ---------------------------------DGI----AVKGPAYGIRSI-RVDGNDALAVYNAVKEAREMAVTEQRP 310 (432)
T ss_pred ---------------------------------Cce----EEeccccceEEE-EecCcchHHHHHHHHHHHHHHHhccCc
Confidence 101 111357899999 79999999999999988764 35789
Q ss_pred EEEEEEccCCCCchhhhhccccccCC
Q 009809 158 VLIHVVTEKGRGYPYAEKAADKYHGV 183 (525)
Q Consensus 158 ~~i~v~t~kg~g~~~~~~~~~~~h~~ 183 (525)
++|+..|.+--.++..+ +..+|.++
T Consensus 311 vliEamtYRvGHHSTSD-DSt~YRsa 335 (432)
T KOG1182|consen 311 VLIEAMTYRVGHHSTSD-DSTAYRSA 335 (432)
T ss_pred hhhhhhhhhhccccCCC-ccccccch
Confidence 99999998754444433 33444443
No 70
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.42 E-value=2.4e-11 Score=139.16 Aligned_cols=294 Identities=19% Similarity=0.156 Sum_probs=193.5
Q ss_pred cccHHHHHHHHHHHHHhcCC--CE--EEEecCCCCC--cchH-HHHHhC-----CCCeeeccchHHHHHHHH--------
Q 009809 200 TQSYTTYFAEALIAEAEVDK--DV--VAIHAAMGGG--TGLN-LFLRRF-----PTRCFDVGIAEQHAVTFA-------- 259 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~--~~--v~~~~D~~~s--~~l~-~~~~~~-----p~r~~~~gIaE~~~~~~a-------- 259 (525)
..+-.+|+.+.+.+..++|. .+ --+-.-+.|| ++++ .|.+.- -+-+++.+++|.-++.++
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 45667899888887666663 22 1122234444 2332 222211 137889999999999999
Q ss_pred -HHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCC----C-eEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEcc
Q 009809 260 -AGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL----P-VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAP 333 (525)
Q Consensus 260 -~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~----p-vvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P 333 (525)
.|++..|.+.+++...+++.++.|.+++ +.+... - |++++++.|..+ ..+-|+++....+..|| |+.|
T Consensus 107 ~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~-~n~~G~~~~GGvv~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~P 180 (1165)
T PRK09193 107 FPGAKYDGVFGMWYGKGPGVDRSGDVFRH-ANAAGTSPHGGVLALAGDDHAAKS--STLPHQSEHAFKAAGMP---VLFP 180 (1165)
T ss_pred ccceeeccceEEEecCcCCccccHhHHHH-HHhhcCCCCCcEEEEEecCCCCcc--ccchhhhHHHHHHcCCc---eeCC
Confidence 7778899999999999999999999753 444443 2 555667777422 23445555555555566 9999
Q ss_pred CCHHHHHHHHHHHHhc---CCCcEEEEecCCC------C---C---CcccCCCCCCCccccC----ce------------
Q 009809 334 SDEAELFHMVATAAAI---DDRPSCFRYPRGN------G---I---GVELPPGNKGIPLEVG----KG------------ 382 (525)
Q Consensus 334 ~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~~------~---~---~~~~p~~~~~~~~~~g----~~------------ 382 (525)
+|+||++++.+++++. ..-||.++..... + + ....|. ++..+.+ +|
T Consensus 181 s~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~---~f~~~~~g~~~r~~~~p~~~~~~~~ 257 (1165)
T PRK09193 181 ANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE---DFEMPPGGLNIRWPDPPLEQEARLL 257 (1165)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---cccCCcccccccCCCCcHHHHHHHH
Confidence 9999999999999875 3568888753211 0 0 001111 0111111 11
Q ss_pred -----------------EEEee--CCcEEEEEechhHHHHHHHHHHHHhCCCc--------EEEEeccccccCcHHHHHH
Q 009809 383 -----------------RILIE--GERVALLGYGTAVQSCLAASALLESNGLR--------LTVADARFCKPLDHALIRS 435 (525)
Q Consensus 383 -----------------~~l~~--g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~--------v~vi~~~~l~P~d~~~i~~ 435 (525)
++... ++++.||++|..+..+++|.+.| |++ ++++++-..||+|.+.|++
T Consensus 258 ~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~PL~~~~i~~ 334 (1165)
T PRK09193 258 DYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWPLEPQGVRA 334 (1165)
T ss_pred HHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCCCCHHHHHH
Confidence 11111 36799999999999999998766 665 9999999999999999999
Q ss_pred HhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 436 LAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 436 ~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
++++.+.|+||||-.. =+...|.+.+.+.+. ..+...+|..|.-+ .+ -+-....|+++.|.+++.+.++.
T Consensus 335 Fa~g~~~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~~~g---~~-llp~~gEl~~~~va~~l~~~l~~ 404 (1165)
T PRK09193 335 FAEGLDEILVVEEKRQ-IIEYQLKEELYNWPD---DVRPRVIGKFDPQG---NW-LLPAHGELSPAIIAKAIARRLLK 404 (1165)
T ss_pred HHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCceeEeeeCCCC---Cc-cCCCcCCcCHHHHHHHHHHHhhh
Confidence 9999999999999862 366666666655432 23334567543111 00 00112468999999999877654
No 71
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.37 E-value=1.8e-12 Score=123.50 Aligned_cols=117 Identities=22% Similarity=0.303 Sum_probs=82.6
Q ss_pred cccccccCCCCeEEEEEcccccccchh---HHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQA---YEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQ 77 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~---~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~ 77 (525)
|.+.++++++.+|+||+|||++++|.+ |++.+++...+ .+++.|+++|++. +++.+.... +
T Consensus 71 A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~------i~~pt~~~~-~-------- 135 (227)
T cd02011 71 AYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYK------ISNPTILAR-I-------- 135 (227)
T ss_pred HHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCc------ccCCccccc-c--------
Confidence 566788999999999999999999996 88888888765 6799999888865 233322100 0
Q ss_pred cChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHh--------
Q 009809 78 SNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEV-------- 149 (525)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a-------- 149 (525)
..+++. .+|++|||..+ .|||||+.++.++++.+
T Consensus 136 ---------------------~~e~l~----------------~~~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i 177 (227)
T cd02011 136 ---------------------SHEELE----------------ALFRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEI 177 (227)
T ss_pred ---------------------CchhHH----------------HHHHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHH
Confidence 012222 23899999999 68999998776644322
Q ss_pred hhc--------CCCCC--EEEEEEccCCCCch
Q 009809 150 KNT--------KTTGP--VLIHVVTEKGRGYP 171 (525)
Q Consensus 150 ~~~--------~~~~P--~~i~v~t~kg~g~~ 171 (525)
+++ ...+| .+|.++|+||+.-+
T Consensus 178 ~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 178 KAIQKRAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred HHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 111 12345 58999999999843
No 72
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.37 E-value=2.9e-11 Score=138.13 Aligned_cols=295 Identities=19% Similarity=0.166 Sum_probs=189.2
Q ss_pred cccHHHHHHHHHHHHHhcCCC--EE--EEecCCCCC--cch-HHHHHh---CC--CCeeeccchHHHH---------HHH
Q 009809 200 TQSYTTYFAEALIAEAEVDKD--VV--AIHAAMGGG--TGL-NLFLRR---FP--TRCFDVGIAEQHA---------VTF 258 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~--~v--~~~~D~~~s--~~l-~~~~~~---~p--~r~~~~gIaE~~~---------~~~ 258 (525)
..+-.+|+.+.+....++|-. +- -+-.-+.|| +++ ..|.+. .. +-+++.+++|..+ +.+
T Consensus 30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~ 109 (1186)
T PRK13029 30 YISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLEL 109 (1186)
T ss_pred eecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhccc
Confidence 445668888777555555432 11 112223344 222 223221 12 3688999999999 666
Q ss_pred HHHHhcCCCeEEEeechhhHHHHHHHHHHHh-hcCCCC---eEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccC
Q 009809 259 AAGLACEGLKPFCAIYSSFMQRAYDQVVHDV-DLQKLP---VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPS 334 (525)
Q Consensus 259 a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~-~~~~~p---vvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~ 334 (525)
+.|.+..|.+.+++...+++.++.|.+++.. +++... |++++++.|..+ ..+-|+++.......|| |+.|+
T Consensus 110 ~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~Ps 184 (1186)
T PRK13029 110 DPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS--SSVAHQSDHTFIAWGIP---VLYPA 184 (1186)
T ss_pred ccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc--ccCHHHHHHHHHHcCCc---eeCCC
Confidence 6777778999999999999999999976533 244443 555667777422 24455555555555566 99999
Q ss_pred CHHHHHHHHHHHHhc---CCCcEEEEecCCC------C---C---CcccCCCCCCCccccC----ce-------------
Q 009809 335 DEAELFHMVATAAAI---DDRPSCFRYPRGN------G---I---GVELPPGNKGIPLEVG----KG------------- 382 (525)
Q Consensus 335 ~~~e~~~~~~~a~~~---~~~Pv~i~~~~~~------~---~---~~~~p~~~~~~~~~~g----~~------------- 382 (525)
|+||++++..++++. ..-||.++..... + + ....|. ++..+.+ +|
T Consensus 185 ~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~---~f~~~~~g~~~r~~~~p~~~e~~~~~ 261 (1186)
T PRK13029 185 SVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD---DFVLPPGGLHIRWPDDPLAQEERMLE 261 (1186)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc---cccCCccccccccCCCcHHHHHHHHH
Confidence 999999999999875 3568888764321 0 0 000111 0100110 00
Q ss_pred ----------------EEE--eeCCcEEEEEechhHHHHHHHHHHHHhCCCc--------EEEEeccccccCcHHHHHHH
Q 009809 383 ----------------RIL--IEGERVALLGYGTAVQSCLAASALLESNGLR--------LTVADARFCKPLDHALIRSL 436 (525)
Q Consensus 383 ----------------~~l--~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~--------v~vi~~~~l~P~d~~~i~~~ 436 (525)
++. ..++++.||++|..+..+++|...| |++ ++++++-..||+|.+.++++
T Consensus 262 ~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~~~~~~gi~ilKvgm~~PL~~~~i~~F 338 (1186)
T PRK13029 262 FKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDATCAALGIRLLKVGCVWPLDPQSVREF 338 (1186)
T ss_pred HHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChhhccccCCCEEEeCCCCCCCHHHHHHH
Confidence 111 1246799999999999999998766 554 89999999999999999999
Q ss_pred hccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCc-------cC-CCCChHHHH-HHcCCCHHHHHHHH
Q 009809 437 AKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDR-------YI-DHGSPADQL-AQAGLTPSHIAATV 507 (525)
Q Consensus 437 ~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~-------~~-~~g~~~~l~-~~~gl~~~~I~~~i 507 (525)
+++.+.|+||||-. .=+...|.+.+.+.+. ..+...+|..|. +. +.|. .++ ..-.|+++.|.+++
T Consensus 339 a~g~d~vlVVEE~~-p~iE~qlk~~l~~~~~---~~rp~v~GK~~~~~~~~~~~~~~~g~--~llp~~gEL~p~~va~~l 412 (1186)
T PRK13029 339 AQGLEEVLVVEEKR-AVIEYQLKEELYNWRE---DVRPAIFGKFDHRDGAGGEWSVPAGR--WLLPAHAELSPALIAKAI 412 (1186)
T ss_pred HhcCCEEEEEecCc-hHHHHHHHHHHhhccC---CcCCeeEecccccccccccccccccC--CCCCcccCcCHHHHHHHH
Confidence 99999999999986 2366666666655432 233345675440 00 0011 112 23568999999999
Q ss_pred HHHh
Q 009809 508 FNIL 511 (525)
Q Consensus 508 ~~~l 511 (525)
.+.+
T Consensus 413 ~~~l 416 (1186)
T PRK13029 413 ARRL 416 (1186)
T ss_pred HHHH
Confidence 7776
No 73
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.34 E-value=1.6e-11 Score=111.63 Aligned_cols=149 Identities=22% Similarity=0.205 Sum_probs=109.9
Q ss_pred HHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEee-chhhHHHHHHHHHHH
Q 009809 210 ALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHD 288 (525)
Q Consensus 210 ~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t-~~~F~~~a~dqi~~~ 288 (525)
++.+.+++..--++++-+......+-....+.|++.+..+++|++++++|.|+++.|.+|++.+ +++|+.++++++. .
T Consensus 2 ~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~ 80 (154)
T cd06586 2 AFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-D 80 (154)
T ss_pred hHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-H
Confidence 3455555555334455443333334333445689999999999999999999999987888887 5999999999987 6
Q ss_pred hhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecC
Q 009809 289 VDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 360 (525)
Q Consensus 289 ~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~ 360 (525)
+...++||+++....|..+..+.+||..++..+++.+|++.+..|+..++ ...+..++. ...+|+++++++
T Consensus 81 a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 81 AAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAEL-PAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred HHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHH-HHHHHHHHHHHhcCCCCEEEEccC
Confidence 77789999999877775444567899999999999999998887766544 444444443 236799998753
No 74
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.26 E-value=5.9e-12 Score=116.95 Aligned_cols=115 Identities=19% Similarity=0.132 Sum_probs=82.2
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|++.++..++++|+|++|||+++ +..++|.+|+++++|+++||.||+.+. .+.+ ..
T Consensus 56 ~AiGa~la~~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~--------------~~~~-~~------ 112 (172)
T cd02004 56 YAIAAALARPDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWY--------------QGLD-GQ------ 112 (172)
T ss_pred HHHHHHHhCCCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccc--------------cchh-hh------
Confidence 367889999999999999999998 456889999999999999998887542 1100 00
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHH-HHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAA-KVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
+... ..+....++..+++..++++||+++.. + .+++++.++++++.+ .++|++
T Consensus 113 ---------------------~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~-v--~~~~el~~al~~a~~--~~~p~l 166 (172)
T cd02004 113 ---------------------QLSYGLGLPVTTLLPDTRYDLVAEAFGGKGEL-V--TTPEELKPALKRALA--SGKPAL 166 (172)
T ss_pred ---------------------hhhccCCCceeccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHHHHHHHH--cCCCEE
Confidence 0000 000000112234556779999999884 4 469999999999988 689999
Q ss_pred EEEEc
Q 009809 160 IHVVT 164 (525)
Q Consensus 160 i~v~t 164 (525)
|++.+
T Consensus 167 iev~i 171 (172)
T cd02004 167 INVII 171 (172)
T ss_pred EEEEc
Confidence 99975
No 75
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.24 E-value=4.8e-12 Score=118.16 Aligned_cols=118 Identities=20% Similarity=0.246 Sum_probs=85.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||++.... +++|.+|+++++|+++||.||+.+.....+.. ....
T Consensus 60 AiGa~la~p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~-~~~~---------------- 121 (178)
T cd02008 60 AIGMAKASEDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPH-PGTG---------------- 121 (178)
T ss_pred HhhHHhhCCCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCC-CCCc----------------
Confidence 67888999999999999999996321 68899999999999999999985421000000 0000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
..+......+++..++++|||++..+.++++++++.++++++.+ .++|++|+
T Consensus 122 --------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~--~~gp~lI~ 173 (178)
T cd02008 122 --------------------------KTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA--VPGVSVII 173 (178)
T ss_pred --------------------------ccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000011234566799999999977799999999999999987 68999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
++++
T Consensus 174 v~~~ 177 (178)
T cd02008 174 AKRP 177 (178)
T ss_pred EeCC
Confidence 9763
No 76
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.24 E-value=9.4e-12 Score=114.80 Aligned_cols=114 Identities=24% Similarity=0.266 Sum_probs=82.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||++++ .+++|++|.++++|+++||.||+.+. .... ......
T Consensus 55 a~Gaa~a~~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~--------------~~~~-~~~~~~--- 114 (168)
T cd00568 55 AIGAALAAPDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYG--------------TIRM-HQEAFY--- 114 (168)
T ss_pred HHHHHHhCCCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccH--------------HHHH-HHHHHc---
Confidence 567788888999999999999996 67999999999999999999998652 1100 000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
..+........++...+++++|+++. .+ .+++++.++++++++ .++|++|+
T Consensus 115 ------------------------~~~~~~~~~~~~d~~~~a~~~G~~~~-~v--~~~~~l~~a~~~a~~--~~~p~~i~ 165 (168)
T cd00568 115 ------------------------GGRVSGTDLSNPDFAALAEAYGAKGV-RV--EDPEDLEAALAEALA--AGGPALIE 165 (168)
T ss_pred ------------------------CCCcccccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000011122345567999999988 44 458999999999987 78999999
Q ss_pred EEc
Q 009809 162 VVT 164 (525)
Q Consensus 162 v~t 164 (525)
++|
T Consensus 166 v~~ 168 (168)
T cd00568 166 VKT 168 (168)
T ss_pred EEC
Confidence 986
No 77
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.16 E-value=4.3e-11 Score=112.62 Aligned_cols=115 Identities=20% Similarity=0.338 Sum_probs=84.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++ +...+|.+|+++++|+++||.||+.+ +.+.....
T Consensus 59 aiGa~la~~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~--------------~~~~~~~~------- 115 (186)
T cd02015 59 AIGAKVARPDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSL--------------GMVRQWQE------- 115 (186)
T ss_pred HHHHHHhCCCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCcc--------------HHHHHHHH-------
Confidence 67888999999999999999998 55677999999999999999999865 22211000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+.+. .+. ..+++..++++||+++.. + ++.++|.++++++.+ .++|++
T Consensus 116 ----------------------~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~~p~l 168 (186)
T cd02015 116 ----------------------LFYEGRYSHTTLDSNPDFVKLAEAYGIKGLR-V--EKPEELEAALKEALA--SDGPVL 168 (186)
T ss_pred ----------------------HHcCCceeeccCCCCCCHHHHHHHCCCceEE-e--CCHHHHHHHHHHHHh--CCCCEE
Confidence 00000010 011 134566789999999884 4 558999999999987 689999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+..
T Consensus 169 iev~~~~ 175 (186)
T cd02015 169 LDVLVDP 175 (186)
T ss_pred EEEEeCC
Confidence 9999853
No 78
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.16 E-value=4.7e-11 Score=114.07 Aligned_cols=128 Identities=18% Similarity=0.260 Sum_probs=86.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.+++.++++|||++|||+|..+ ..+|.+|.++++|+++||.||+.+ +.+.. +........
T Consensus 57 AiGa~la~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~--------------g~~~~-~q~~~~~~~ 119 (205)
T cd02003 57 GLGAKLAKPDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGF--------------GCINN-LQESTGSGS 119 (205)
T ss_pred HHHHHHhCCCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCcc--------------HHHHH-HHHHhcCcc
Confidence 6788899999999999999999864 456999999999999999999865 32211 000000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHH--H-HHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVD--E-YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV 158 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~ 158 (525)
+ + ..+..+.. . .......+++..++++||+++..+ +++++|.+|++++.+ .++|+
T Consensus 120 ~--------------~---~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~ 177 (205)
T cd02003 120 F--------------G---TEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV---KTIEELKAALAKAKA--SDRTT 177 (205)
T ss_pred c--------------c---chhcccccccccccCCCCCCCHHHHHHhCCCEEEEE---CCHHHHHHHHHHHHh--CCCCE
Confidence 0 0 00000000 0 000112356678899999998855 789999999999987 78999
Q ss_pred EEEEEccCCC
Q 009809 159 LIHVVTEKGR 168 (525)
Q Consensus 159 ~i~v~t~kg~ 168 (525)
+|+|.+.+..
T Consensus 178 lIeV~v~~~~ 187 (205)
T cd02003 178 VIVIKTDPKS 187 (205)
T ss_pred EEEEEeeccc
Confidence 9999996543
No 79
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.13 E-value=6.5e-11 Score=112.27 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=85.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.+++.++++|+|++|||+++. ...+|.+|+++++|+++||.||+.+ +.+.+...
T Consensus 62 aiGa~la~p~r~vv~i~GDG~f~m--~~~eL~Ta~~~~lpvi~vV~NN~~y--------------g~~~~~q~------- 118 (196)
T cd02013 62 IIGAKAAAPDRPVVAIAGDGAWGM--SMMEIMTAVRHKLPVTAVVFRNRQW--------------GAEKKNQV------- 118 (196)
T ss_pred HHHHHHhCCCCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECchh--------------HHHHHHHH-------
Confidence 678889999999999999999985 4566999999999999999888865 22211000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHH-HhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc-CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEY-ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT-KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~-~~~~P~~ 159 (525)
......+ ..++..+++..++++||+++... ++.++|..+++++.+. ..++|++
T Consensus 119 ----------------------~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~p~l 173 (196)
T cd02013 119 ----------------------DFYNNRFVGTELESESFAKIAEACGAKGITV---DKPEDVGPALQKAIAMMAEGKTTV 173 (196)
T ss_pred ----------------------HHcCCCcccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhcCCCCCeEE
Confidence 0000001 01222456678899999998854 6699999999988651 1478999
Q ss_pred EEEEccCCCC
Q 009809 160 IHVVTEKGRG 169 (525)
Q Consensus 160 i~v~t~kg~g 169 (525)
|+|.+....+
T Consensus 174 iev~v~~~~~ 183 (196)
T cd02013 174 IEIVCDQELG 183 (196)
T ss_pred EEEEeCcccC
Confidence 9999865443
No 80
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.13 E-value=6.8e-11 Score=110.43 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=82.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++.+ ..| |.++.++++|+++||.||+.+ +.+.+..
T Consensus 60 aiGa~~a~~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~--------------~~~~~~~-------- 115 (178)
T cd02014 60 AIAAKLAYPDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDL--------------GFIKWEQ-------- 115 (178)
T ss_pred HHHHHHhCCCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCch--------------hHHHHHH--------
Confidence 5677888899999999999999977 555 889999999999999999865 2221000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.......+..++..+++..+++++|+++... .+.+++.++++++++ .++|++|+
T Consensus 116 ---------------------~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~~l~~a~~--~~~p~lie 169 (178)
T cd02014 116 ---------------------EVMGQPEFGVDLPNPDFAKIAEAMGIKGIRV---EDPDELEAALDEALA--ADGPVVID 169 (178)
T ss_pred ---------------------HHhcCCceeccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0000000111112345567899999998743 578899999999988 68999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
+.+.
T Consensus 170 v~~~ 173 (178)
T cd02014 170 VVTD 173 (178)
T ss_pred EEeC
Confidence 9884
No 81
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.12 E-value=9.1e-11 Score=109.41 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=84.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++||||+|||++. +....|.+|.++++|+++||.||+.+ +.+. ..+
T Consensus 57 aiGa~la~~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~--------------g~~~-~~~------- 112 (177)
T cd02010 57 AIGAKLVYPDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGY--------------GLIK-WKQ------- 112 (177)
T ss_pred HHHHHHhCCCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcc--------------hHHH-HHH-------
Confidence 67788999999999999999997 56677999999999999999999865 2221 000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.....+....++-.+++..+.++||.++... .+.+++.++++++.+ .++|++|+
T Consensus 113 ---------------------~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lie 166 (177)
T cd02010 113 ---------------------EKEYGRDSGVDFGNPDFVKYAESFGAKGYRI---ESADDLLPVLERALA--ADGVHVID 166 (177)
T ss_pred ---------------------HHhcCCcccCcCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0000001111222346677899999998754 689999999999988 68999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.+.
T Consensus 167 v~~~ 170 (177)
T cd02010 167 CPVD 170 (177)
T ss_pred EEec
Confidence 9884
No 82
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.11 E-value=1.4e-10 Score=108.35 Aligned_cols=119 Identities=27% Similarity=0.312 Sum_probs=80.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.+++.++++|+|++|||+++.+. ++|.+|.++++|+++||.||+.+ +.+....+.... ..
T Consensus 58 aiGaala~~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~--------------~~~~~~~~~~~~-~~ 120 (178)
T cd02002 58 AVGAALANPDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGY--------------GALRSFLKRVGP-EG 120 (178)
T ss_pred HHHHHhcCCCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccH--------------HHHHHHHHHHcC-CC
Confidence 66778888999999999999999774 67999999999999999999855 211100000000 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhc--cccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARG--MISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
.. ..+....+ ...++...+++++|+++. .++ +.+++.++++++.+ .++|++
T Consensus 121 ~~----------------------~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~--~~~p~v 173 (178)
T cd02002 121 PG----------------------ENAPDGLDLLDPGIDFAAIAKAFGVEAE-RVE--TPEELDEALREALA--EGGPAL 173 (178)
T ss_pred cc----------------------cccccccccCCCCCCHHHHHHHcCCceE-EeC--CHHHHHHHHHHHHh--CCCCEE
Confidence 00 00000001 112455677999999988 444 49999999999987 689999
Q ss_pred EEEEc
Q 009809 160 IHVVT 164 (525)
Q Consensus 160 i~v~t 164 (525)
|++++
T Consensus 174 i~v~v 178 (178)
T cd02002 174 IEVVV 178 (178)
T ss_pred EEEEC
Confidence 99863
No 83
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.07 E-value=1.2e-10 Score=108.44 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=80.7
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++.. +++|||++|||++. +...+|.+|.++++|+++||-||+.+. .+. .+......
T Consensus 60 aiGa~la~-~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g--------------~~~-~~~~~~~~-- 119 (175)
T cd02009 60 ALGIALAT-DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGG--------------IFS-LLPQASFE-- 119 (175)
T ss_pred HHHHHhcC-CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCc--------------hhe-eccCCccc--
Confidence 56677777 89999999999997 556779999999999999999998652 110 00000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
..+ ...+ .....+++..++++||+++..+ ++.+++..+++++.+ .++|++|+
T Consensus 120 -------------------~~~---~~~~-~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lIe 171 (175)
T cd02009 120 -------------------DEF---ERLF-GTPQGLDFEHLAKAYGLEYRRV---SSLDELEQALESALA--QDGPHVIE 171 (175)
T ss_pred -------------------chh---hhhh-cCCCCCCHHHHHHHcCCCeeeC---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 0000 0002356677899999998855 689999999999988 68999999
Q ss_pred EEc
Q 009809 162 VVT 164 (525)
Q Consensus 162 v~t 164 (525)
|.+
T Consensus 172 v~v 174 (175)
T cd02009 172 VKT 174 (175)
T ss_pred EeC
Confidence 976
No 84
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.2e-08 Score=105.41 Aligned_cols=249 Identities=15% Similarity=0.166 Sum_probs=156.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----------H----HHHHhCCC--C---eeeccchHHHHHHHHH
Q 009809 201 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----------N----LFLRRFPT--R---CFDVGIAEQHAVTFAA 260 (525)
Q Consensus 201 ~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----------~----~~~~~~p~--r---~~~~gIaE~~~~~~a~ 260 (525)
..|..|=+-++-.++-+..++.+-+.|+|.++-- + ++-.--++ . +-|..++|.+.+|.--
T Consensus 564 iDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEy 643 (913)
T KOG0451|consen 564 IDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEY 643 (913)
T ss_pred cchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhc
Confidence 4555555667788888889999999999965311 0 01111121 2 4478999999999999
Q ss_pred HHhcCC--CeEEEee-chhhHHHH---HHHHHHHhh---cCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhc-------
Q 009809 261 GLACEG--LKPFCAI-YSSFMQRA---YDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC------- 324 (525)
Q Consensus 261 G~A~~G--~~pi~~t-~~~F~~~a---~dqi~~~~~---~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~------- 324 (525)
|+|... ..++++. |++|..-+ +|.++...- +...-+++..++ |+.| -|+-|+++.--.++..
T Consensus 644 GmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPH-GyDG-AgpeHSSCRiERFLQlCDS~E~~ 721 (913)
T KOG0451|consen 644 GMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPH-GYDG-AGPEHSSCRIERFLQLCDSKETS 721 (913)
T ss_pred ccccCCcccceeehhhhcccccCceEEEeeeecccchhhhhhCCeEEEccC-CcCC-CCCccchhhHHHHHHHhcccccc
Confidence 999974 5688887 88886433 333221110 112234444444 5444 3788998765545432
Q ss_pred ----CCCcEEEccCCHHHHHHHHHHHH-hcCCCcEEEEecCCCCCCcccCCCC-CCCccccCce--EEEee------CCc
Q 009809 325 ----LPNMVVMAPSDEAELFHMVATAA-AIDDRPSCFRYPRGNGIGVELPPGN-KGIPLEVGKG--RILIE------GER 390 (525)
Q Consensus 325 ----ipg~~v~~P~~~~e~~~~~~~a~-~~~~~Pv~i~~~~~~~~~~~~p~~~-~~~~~~~g~~--~~l~~------g~d 390 (525)
--||.|+-|.+|.+.+-+++.-+ .+-.+|.++..+|.... +|... ....+..|-- .++.+ .-+
T Consensus 722 vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVigd~~~~p~kvk 798 (913)
T KOG0451|consen 722 VDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIGDTIAKPEKVK 798 (913)
T ss_pred CCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCccccccccccccChhHhe
Confidence 12688999999999999996543 45678988877765311 22110 0011222211 12221 235
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCC----eEEEEcCCC-CCCHH
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE----VLITVEEGS-IGGFG 455 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~----~vvvvE~~~-~gglg 455 (525)
-+|+++|-....+.++-+.+..+ -.+.++++-+|-|||.+.+.+.+++++ .|..-|++. .|.|.
T Consensus 799 kvifcSGKH~y~l~k~Re~rgak-d~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs 867 (913)
T KOG0451|consen 799 KVIFCSGKHYYTLAKEREKRGAK-DTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS 867 (913)
T ss_pred EEEEecCcchhhHHHHHHhcccc-cceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence 67999999988877766554222 248899999999999999888776653 567778876 57764
No 85
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.05 E-value=7.2e-11 Score=107.46 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=84.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..|+++|||++|||++... ..+|.+|.+.++|+++||.||+.+ +.+... ......
T Consensus 37 aiGa~~a~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~--------------~~~~~~-~~~~~~-- 97 (153)
T PF02775_consen 37 AIGAALARPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGY--------------GMTGGQ-QTPFGG-- 97 (153)
T ss_dssp HHHHHHHSTTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBS--------------HHHHHH-HHHTTS--
T ss_pred hhHHHhhcCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcc--------------eEeccc-cccCcC--
Confidence 6778889999999999999999855 566999999999999999999865 222110 000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHh---ccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYAR---GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV 158 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~ 158 (525)
...... .+..++...+++++|+++. .++..|++++.++++++.+ .++|+
T Consensus 98 -------------------------~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~al~~a~~--~~gp~ 149 (153)
T PF02775_consen 98 -------------------------GRFSGVDGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEALREALE--SGGPA 149 (153)
T ss_dssp -------------------------TCHHSTBTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHHHHHHHH--SSSEE
T ss_pred -------------------------cccccccccccccCCHHHHHHHcCCcEE-EEccCCHHHHHHHHHHHHh--CCCcE
Confidence 000001 1334566788999999977 6666777999999999997 79999
Q ss_pred EEEE
Q 009809 159 LIHV 162 (525)
Q Consensus 159 ~i~v 162 (525)
+|+|
T Consensus 150 vIeV 153 (153)
T PF02775_consen 150 VIEV 153 (153)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9986
No 86
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.05 E-value=6.9e-10 Score=105.82 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=85.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|||++|||+|+ |...+|.+|.++++|+++||.||+.+ |.+.+..+.... ..
T Consensus 66 aiGa~la~p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~y--------------g~~~~~q~~~~~-~~ 128 (202)
T cd02006 66 ALGVAAADPDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYL--------------GLIRQAQRAFDM-DY 128 (202)
T ss_pred HHhHHhhCCCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchH--------------HHHHHHHHHhcC-cc
Confidence 67889999999999999999998 55677999999999999999999966 322111100000 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~ 159 (525)
+.. .... ....-......+++..++++||.++..+ .+.++|.++++++.+. ..++|++
T Consensus 129 ~~~----------------~~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~~p~l 188 (202)
T cd02006 129 QVN----------------LAFE-NINSSELGGYGVDHVKVAEGLGCKAIRV---TKPEELAAAFEQAKKLMAEHRVPVV 188 (202)
T ss_pred ccc----------------cccc-cccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHHhcccCCCcEE
Confidence 000 0000 0000000011356678899999998755 7789999999998741 1478999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+..
T Consensus 189 iev~i~~ 195 (202)
T cd02006 189 VEAILER 195 (202)
T ss_pred EEEEecc
Confidence 9998843
No 87
>PRK06163 hypothetical protein; Provisional
Probab=99.02 E-value=5e-10 Score=106.26 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=80.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhcccc-CCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~-~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.+++.++++|||++|||+++ |...+|.++.++ ++|+++||.||+.+... +...
T Consensus 66 AiGaalA~p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~-----~~~~---------------- 122 (202)
T PRK06163 66 ALGVALAQPKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQIT-----GGQP---------------- 122 (202)
T ss_pred HHHHHHhCCCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhc-----CCcc----------------
Confidence 67889999999999999999997 666789999876 68999999999865210 0000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCce-EeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-YIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
+ .+...+++..++++||++ .... .+.++|..+++++.+ .++|++
T Consensus 123 -----------------------------~-~~~~~~Df~~lA~a~G~~~~~~v---~~~~el~~al~~a~~--~~~p~l 167 (202)
T PRK06163 123 -----------------------------T-LTSQTVDVVAIARGAGLENSHWA---ADEAHFEALVDQALS--GPGPSF 167 (202)
T ss_pred -----------------------------C-CCCCCCCHHHHHHHCCCceEEEe---CCHHHHHHHHHHHHh--CCCCEE
Confidence 0 000123445678999997 4434 689999999999987 689999
Q ss_pred EEEEccCC
Q 009809 160 IHVVTEKG 167 (525)
Q Consensus 160 i~v~t~kg 167 (525)
|+|.+...
T Consensus 168 IeV~i~~~ 175 (202)
T PRK06163 168 IAVRIDDK 175 (202)
T ss_pred EEEEecCC
Confidence 99998543
No 88
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=99.01 E-value=4.7e-10 Score=108.48 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=85.0
Q ss_pred eeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhc
Q 009809 245 CFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC 324 (525)
Q Consensus 245 ~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ 324 (525)
.+...-+|+++++++.|+|++|.|.++.|.++++..+.|.+ ..+++.++|++++...++..+..+++|+...|+.+.+.
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d 116 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARD 116 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTT
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHh
Confidence 55667999999999999999999999999999999999995 56778999988887554434445789999999877674
Q ss_pred CCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCC
Q 009809 325 LPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 361 (525)
Q Consensus 325 ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~ 361 (525)
-++.+++|+|+||++++...|++. ...||+++.+..
T Consensus 117 -~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 117 -SGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp -SS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred -cCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 789999999999999999999864 356999887654
No 89
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.98 E-value=1.4e-09 Score=102.42 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=82.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCC-CEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l-~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++..++++|+|++|||+|+ +..++|.+++++++ |+++||.||+.+... +.... .
T Consensus 57 AiGaala~p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~-----~~~~~---~----------- 115 (188)
T cd03371 57 ALGIALARPDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV-----GGQPT---V----------- 115 (188)
T ss_pred HHHHHHhCCCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc-----CCcCC---C-----------
Confidence 67778889999999999999998 56678999999885 799999899865210 00000 0
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
...+++..+++++|+.+...+ ++.++|.++++++.+ .++|++|
T Consensus 116 ---------------------------------~~~~d~~~~A~a~G~~~~~~v--~~~~el~~al~~a~~--~~~p~lI 158 (188)
T cd03371 116 ---------------------------------SFDVSLPAIAKACGYRAVYEV--PSLEELVAALAKALA--ADGPAFI 158 (188)
T ss_pred ---------------------------------CCCCCHHHHHHHcCCceEEec--CCHHHHHHHHHHHHh--CCCCEEE
Confidence 001234556899999864234 589999999999987 6899999
Q ss_pred EEEccCCCC
Q 009809 161 HVVTEKGRG 169 (525)
Q Consensus 161 ~v~t~kg~g 169 (525)
++.+.++++
T Consensus 159 ev~~~~~~~ 167 (188)
T cd03371 159 EVKVRPGSR 167 (188)
T ss_pred EEEecCCCC
Confidence 999977665
No 90
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.96 E-value=7.7e-10 Score=120.28 Aligned_cols=116 Identities=23% Similarity=0.260 Sum_probs=89.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+++++..+++.|+|++|||+|+ |..++|.+|.++++|+++||.||+.+ |.+.
T Consensus 417 AIGAkla~P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~--------------g~v~----------- 469 (550)
T COG0028 417 AIGAKLAAPDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGY--------------GMVR----------- 469 (550)
T ss_pred HHHHHhhCCCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCcc--------------ccch-----------
Confidence 78899999999999999999998 66777999999999999999999966 3331
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHH-HHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVD-EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
+++.....+ .+..++..+.+..+.++||++...+ .+.++|.++++++.+ .++|++|
T Consensus 470 ------------------~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v---~~~~el~~al~~al~--~~~p~li 526 (550)
T COG0028 470 ------------------QWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV---ETPEELEEALEEALA--SDGPVLI 526 (550)
T ss_pred ------------------HHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 112111111 1223333322577899999999855 599999999999999 7999999
Q ss_pred EEEccCC
Q 009809 161 HVVTEKG 167 (525)
Q Consensus 161 ~v~t~kg 167 (525)
+|.+...
T Consensus 527 dv~id~~ 533 (550)
T COG0028 527 DVVVDPE 533 (550)
T ss_pred EEEecCc
Confidence 9998543
No 91
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.94 E-value=1.6e-09 Score=98.98 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=77.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhcccc-CCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~-~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++..+ ++|||++|||+|+ +...+|.+++++ ++|+++||.||+.+... +....
T Consensus 51 AiGa~~a~~-~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~-----~~~~~--------------- 107 (157)
T cd02001 51 GLGLALGLS-RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGST-----GGQPT--------------- 107 (157)
T ss_pred HHHHHhcCC-CcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccccc-----CCcCC---------------
Confidence 455666655 8999999999997 455669999888 59999999888855210 00000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
....+++..+++++|+++... ++.+++.++++++.+ .++|++|
T Consensus 108 --------------------------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~vi 150 (157)
T cd02001 108 --------------------------------PSSNVNLEAWAAACGYLVLSA---PLLGGLGSEFAGLLA--TTGPTLL 150 (157)
T ss_pred --------------------------------CCCCCCHHHHHHHCCCceEEc---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 000234456789999998854 789999999999988 6899999
Q ss_pred EEEccC
Q 009809 161 HVVTEK 166 (525)
Q Consensus 161 ~v~t~k 166 (525)
++.+.+
T Consensus 151 ~v~i~~ 156 (157)
T cd02001 151 HAPIAP 156 (157)
T ss_pred EEEecC
Confidence 999854
No 92
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.91 E-value=5.5e-09 Score=101.73 Aligned_cols=129 Identities=19% Similarity=0.294 Sum_probs=84.0
Q ss_pred cccccccCCCCeEEEEEccccc-ccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|+++++..++++|||++|||++ + +..++|.+|.++++|+++||.||+.+.....+ .......+... ..+
T Consensus 71 AiGa~~a~p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q-~~~~~~~~~~~------~~~- 140 (235)
T cd03376 71 ALKALGRGKDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMNTGIQ-RSGSTPYGAWT------TTT- 140 (235)
T ss_pred HHHHhccCCCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCcccccCCCC-CCCCCCCCCEe------ecC-
Confidence 4566777899999999999995 5 55677999999999999999999865311100 00000000000 000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
..+..+. ......+++..+++++|+.+...+.-++++++.++++++.+ .++|++|
T Consensus 141 --------------~~g~~~~---------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~--~~gP~lI 195 (235)
T cd03376 141 --------------PVGKVSF---------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS--IEGPAYI 195 (235)
T ss_pred --------------CCCcccc---------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh--CCCCEEE
Confidence 0000000 00111245567899999998754556899999999999998 6899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
++.+.
T Consensus 196 ev~~~ 200 (235)
T cd03376 196 HILSP 200 (235)
T ss_pred EEECC
Confidence 99873
No 93
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=98.90 E-value=1.6e-09 Score=119.52 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=85.9
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+...
T Consensus 417 AiGa~la~p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~--------------g~i~~~--------- 471 (574)
T PRK09124 417 ALGAQAAHPGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVL--------------GFVAME--------- 471 (574)
T ss_pred HHHHHHhCCCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------ccHHHH---------
Confidence 67889999999999999999998 55667999999999999999999865 222100
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+.......+..++..+++..++++||.++..+ ++.++|.++++++.+ .++|++|+
T Consensus 472 --------------------~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lIe 526 (574)
T PRK09124 472 --------------------MKAGGYLTDGTDLHNPDFAAIAEACGITGIRV---EKASELDGALQRAFA--HDGPALVD 526 (574)
T ss_pred --------------------HHhcCCccccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000000111223456778899999998855 789999999999987 68999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.+.
T Consensus 527 v~i~ 530 (574)
T PRK09124 527 VVTA 530 (574)
T ss_pred EEec
Confidence 9884
No 94
>PRK07524 hypothetical protein; Provisional
Probab=98.90 E-value=1.7e-09 Score=118.43 Aligned_cols=118 Identities=21% Similarity=0.257 Sum_probs=87.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.+..+
T Consensus 416 aiGa~lA~p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~--------------g~i~~~~~------- 472 (535)
T PRK07524 416 AIGAALGAPERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGY--------------GEIRRYMV------- 472 (535)
T ss_pred HHHHHHhCCCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCch--------------HHHHHHHH-------
Confidence 67788999999999999999997 44555999999999999999999865 32311110
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
. .....+..++..+++..++++||.++... .+.++|.++++++.+ .++|++|+
T Consensus 473 --------------------~--~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lie 525 (535)
T PRK07524 473 --------------------A--RDIEPVGVDPYTPDFIALARAFGCAAERV---ADLEQLQAALRAAFA--RPGPTLIE 525 (535)
T ss_pred --------------------H--hcCCccccCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00000111233456678899999988744 589999999999988 68999999
Q ss_pred EEccCCCC
Q 009809 162 VVTEKGRG 169 (525)
Q Consensus 162 v~t~kg~g 169 (525)
|.+.+-.+
T Consensus 526 v~~~~~~~ 533 (535)
T PRK07524 526 VDQACWFA 533 (535)
T ss_pred EECCcccc
Confidence 99876544
No 95
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.90 E-value=2.6e-09 Score=99.89 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=77.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++.. +++|+|++|||+|+.+ .++|.+|++++ +|+++||.||+.+.. +..
T Consensus 51 AiGa~la~-~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~--------------~~~--------- 104 (181)
T TIGR03846 51 GLGLALAT-DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGS--------------TGN--------- 104 (181)
T ss_pred HHHHHHcC-CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCcccc--------------ccC---------
Confidence 56778888 9999999999999855 47799999998 599999999986521 100
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
++. . ....+++..++++||+.+... -++.++|.++++ +.+ .++|++|
T Consensus 105 --------------------q~~------~--~~~~~d~~~lA~a~G~~~~~~--v~~~~~l~~al~-a~~--~~~p~li 151 (181)
T TIGR03846 105 --------------------QPT------P--ASRRTDLELVAKAAGIRNVEK--VADEEELRDALK-ALA--MKGPTFI 151 (181)
T ss_pred --------------------cCC------C--CCCCCCHHHHHHHCCCCeEEE--eCCHHHHHHHHH-HHc--CCCCEEE
Confidence 000 0 000234456789999988741 278999999997 766 6899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
+|.+.
T Consensus 152 ~v~~~ 156 (181)
T TIGR03846 152 HVKVK 156 (181)
T ss_pred EEEeC
Confidence 99885
No 96
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.90 E-value=3.5e-09 Score=98.90 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=76.7
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++..+ ++|+|++|||++. +...+|.++.+++ +|+++||.||+.+... +.... .
T Consensus 51 AiGaala~~-~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~-----~~~~~-~------------- 108 (179)
T cd03372 51 GLGLALAQP-RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGST-----GNQPT-H------------- 108 (179)
T ss_pred HHHHHhcCC-CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCcccccc-----CCCCC-C-------------
Confidence 566677777 8999999999997 4456788888887 5788888787754210 00000 0
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
....+++..++++||+.+. .++| +.+++.+++++++ ++|++|
T Consensus 109 --------------------------------~~~~~d~~~lA~a~G~~~~-~v~~-~~~el~~al~~a~----~gp~lI 150 (179)
T cd03372 109 --------------------------------AGKKTDLEAVAKACGLDNV-ATVA-SEEAFEKAVEQAL----DGPSFI 150 (179)
T ss_pred --------------------------------CCCCCCHHHHHHHcCCCeE-EecC-CHHHHHHHHHHhc----CCCEEE
Confidence 0002234456899999988 5565 8999999999887 589999
Q ss_pred EEEccCCCC
Q 009809 161 HVVTEKGRG 169 (525)
Q Consensus 161 ~v~t~kg~g 169 (525)
++.|.++.+
T Consensus 151 ev~~~~~~~ 159 (179)
T cd03372 151 HVKIKPGNT 159 (179)
T ss_pred EEEEcCCCC
Confidence 999966555
No 97
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.89 E-value=1.6e-09 Score=119.38 Aligned_cols=115 Identities=20% Similarity=0.338 Sum_probs=85.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+. ...+|.+|.++++|+++||.||+.+ |.+.+.
T Consensus 417 AiGa~la~p~~~vv~i~GDGsf~~--~~~el~Ta~~~~lpv~~vV~NN~~~--------------g~i~~~--------- 471 (578)
T PRK06546 417 AIGAQLADPGRQVISMSGDGGLSM--LLGELLTVKLYDLPVKVVVFNNSTL--------------GMVKLE--------- 471 (578)
T ss_pred HHHHHHhCCCCcEEEEEcCchHhh--hHHHHHHHHHhCCCeEEEEEECCcc--------------ccHHHH---------
Confidence 678899999999999999999984 4556999999999999999999865 222100
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+.....+.+..++..+++..++++||.++..+ .+.++|.++++++.+ .++|++|+
T Consensus 472 --------------------q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIe 526 (578)
T PRK06546 472 --------------------MLVDGLPDFGTDHPPVDYAAIAAALGIHAVRV---EDPKDVRGALREAFA--HPGPALVD 526 (578)
T ss_pred --------------------HHhcCCCcccccCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000000111222456677899999988744 689999999999987 68999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
|.+..
T Consensus 527 v~~~~ 531 (578)
T PRK06546 527 VVTDP 531 (578)
T ss_pred EEeCC
Confidence 99853
No 98
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=98.89 E-value=2e-09 Score=118.04 Aligned_cols=114 Identities=21% Similarity=0.367 Sum_probs=86.8
Q ss_pred cccccccCC-CCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGR-KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~-~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++..+ +++|+|++|||+|. +...+|.+|.++++|+++||.||+.+ |.+....
T Consensus 405 aiGa~la~p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~--------------g~i~~~q------- 461 (549)
T PRK06457 405 SVGASFAVENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKL--------------GMIKFEQ------- 461 (549)
T ss_pred HHHHHhcCCCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCcc--------------chHHHHH-------
Confidence 678889988 99999999999998 66777999999999999999999866 3231100
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
+. ...+.+..++..+++.+++++||.++..+ ++.++|..+++++.+ .++|++|
T Consensus 462 ---------------------~~-~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 514 (549)
T PRK06457 462 ---------------------EV-MGYPEWGVDLYNPDFTKIAESIGFKGFRL---EEPKEAEEIIEEFLN--TKGPAVL 514 (549)
T ss_pred ---------------------HH-hcCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00 00001112233456788899999998855 789999999999988 6899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
+|.+.
T Consensus 515 eV~i~ 519 (549)
T PRK06457 515 DAIVD 519 (549)
T ss_pred EEEeC
Confidence 99984
No 99
>PRK08611 pyruvate oxidase; Provisional
Probab=98.88 E-value=2.3e-09 Score=118.19 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=86.9
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+....
T Consensus 417 aiGa~la~p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~--------------g~i~~~q-------- 472 (576)
T PRK08611 417 AIAAKIAFPDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQL--------------AFIKYEQ-------- 472 (576)
T ss_pred HHHHHHhCCCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------hHHHHHH--------
Confidence 67788999999999999999998 55677999999999999999999865 3331000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+ ......+..++-.+++..++++||.++..+ ++.++|..+++++.+ .++|++|+
T Consensus 473 --------------------~-~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lIe 526 (576)
T PRK08611 473 --------------------Q-AAGELEYAIDLSDMDYAKFAEACGGKGYRV---EKAEELDPAFEEALA--QDKPVIID 526 (576)
T ss_pred --------------------H-HhcCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 000001111222456778899999998866 889999999999988 68999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
|.+.+
T Consensus 527 V~vd~ 531 (576)
T PRK08611 527 VYVDP 531 (576)
T ss_pred EEeCC
Confidence 99954
No 100
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=98.86 E-value=3.3e-09 Score=116.19 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=85.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+..
T Consensus 417 aiGa~la~~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y--------------~~~~~---------- 470 (539)
T TIGR02418 417 AIGAALVRPNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGY--------------NMVEF---------- 470 (539)
T ss_pred HHHHHHhCCCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcc--------------hHHHH----------
Confidence 67888999999999999999998 56677999999999999999999865 22210
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.+.....+....++..+++..++++||.++..+ ++.++|.++++++.+ .++|++|+
T Consensus 471 -------------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~--~~~p~lIe 526 (539)
T TIGR02418 471 -------------------QEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRV---ESPDQLEPTLRQAME--VEGPVVVD 526 (539)
T ss_pred -------------------HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000000000111222456778899999988865 789999999999987 68999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.+.
T Consensus 527 v~v~ 530 (539)
T TIGR02418 527 IPVD 530 (539)
T ss_pred EEec
Confidence 9984
No 101
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.86 E-value=1.3e-09 Score=102.20 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=78.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+.. .+| |.+|.++++|+++||-||+.+.. +.. +...+
T Consensus 59 aiGaala~~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~--------------~~~-~~~~~---- 117 (183)
T cd02005 59 ALGAALAAPDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTI--------------ERA-IHGPE---- 117 (183)
T ss_pred HHHHHHhCCCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEE--------------EEE-eccCC----
Confidence 6778889999999999999999753 555 88899999998888888886521 100 00000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccC----ceEeeccCCCCHHHHHHHHHHhhhcCCCCC
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG----LYYIGPVDGHNVDDLVAILEEVKNTKTTGP 157 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~dG~d~~~l~~al~~a~~~~~~~P 157 (525)
..+ .++..+++..+++++| +++... ++.+++.++++++.+ ..++|
T Consensus 118 --------------------------~~~-~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~el~~al~~a~~-~~~~p 166 (183)
T cd02005 118 --------------------------ASY-NDIANWNYTKLPEVFGGGGGGLSFRV---KTEGELDEALKDALF-NRDKL 166 (183)
T ss_pred --------------------------cCc-ccCCCCCHHHHHHHhCCCccccEEEe---cCHHHHHHHHHHHHh-cCCCc
Confidence 000 0111245566789999 576644 789999999999976 14789
Q ss_pred EEEEEEcc
Q 009809 158 VLIHVVTE 165 (525)
Q Consensus 158 ~~i~v~t~ 165 (525)
++|++.+.
T Consensus 167 ~liev~~~ 174 (183)
T cd02005 167 SLIEVILP 174 (183)
T ss_pred EEEEEEcC
Confidence 99999984
No 102
>PRK08266 hypothetical protein; Provisional
Probab=98.85 E-value=3.7e-09 Score=115.88 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=86.9
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+.+ .++|.+|.++++|+++||.||+.+ +.+.. .+
T Consensus 411 aiGa~la~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y--------------~~~~~-~~------- 466 (542)
T PRK08266 411 ALGAKVANPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAY--------------GNVRR-DQ------- 466 (542)
T ss_pred HHHHHHhCCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcc--------------hHHHH-HH-------
Confidence 6778899999999999999999965 577999999999999999999865 22210 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+.....+....++..+++..++++||.++..+ .+.++|..+++++.+ .++|++|+
T Consensus 467 --------------------~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lie 521 (542)
T PRK08266 467 --------------------KRRFGGRVVASDLVNPDFVKLAESFGVAAFRV---DSPEELRAALEAALA--HGGPVLIE 521 (542)
T ss_pred --------------------HHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 00000000011122356677899999998844 668999999999987 68899999
Q ss_pred EEccCCCC
Q 009809 162 VVTEKGRG 169 (525)
Q Consensus 162 v~t~kg~g 169 (525)
|.|.++..
T Consensus 522 v~i~~~~~ 529 (542)
T PRK08266 522 VPVPRGSE 529 (542)
T ss_pred EEecCCCC
Confidence 99976643
No 103
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.85 E-value=5.7e-09 Score=98.68 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=81.5
Q ss_pred cccccccCCCCeEEEEEcccc-cccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~-~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++..++++||+++|||+ ++ +...+|.+|.++++|+++||.||+.+.....+... ....+.-
T Consensus 60 AiGa~la~p~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~-~~~~~~~----------- 125 (193)
T cd03375 60 ATGVKLANPDLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASP-TTPEGFK----------- 125 (193)
T ss_pred HHHHHHhCCCCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCC-CCCCCCc-----------
Confidence 678899999999999999999 44 55666999999999999999999865210000000 0000000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
... ..+......+++..+.+++|.++...+.-.+.+++.++++++.+ .++|++|
T Consensus 126 -------------------~~~-----~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~--~~gp~vI 179 (193)
T cd03375 126 -------------------TKT-----TPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ--HKGFSFV 179 (193)
T ss_pred -------------------ccC-----CCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh--cCCCEEE
Confidence 000 00000000134456789999987532233789999999999998 7899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
++.+.
T Consensus 180 ev~~~ 184 (193)
T cd03375 180 EVLSP 184 (193)
T ss_pred EEECC
Confidence 99764
No 104
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.85 E-value=2e-09 Score=118.90 Aligned_cols=116 Identities=16% Similarity=0.305 Sum_probs=83.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+||+|||+|+ +..++|++|.++++|+++||.||+.+. ...+ .+...
T Consensus 446 aiGa~la~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g--------------~~~~-~~~~~---- 504 (578)
T PRK06112 446 AIGAKVARPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILG--------------FQKH-AETVK---- 504 (578)
T ss_pred HHHHHhhCCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccC--------------CEEe-ccccc----
Confidence 67788999999999999999996 778889999999999999999998541 1100 00000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
| +. +....++..+++..++++||+.+..+ ++.++|.++++++.+ .++|++|+
T Consensus 505 ~--------------~~---------~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIe 556 (578)
T PRK06112 505 F--------------GT---------HTDACHFAAVDHAAIARACGCDGVRV---EDPAELAQALAAAMA--APGPTLIE 556 (578)
T ss_pred c--------------CC---------ccccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00 00000111245567799999998854 679999999999987 68999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
|.+.+
T Consensus 557 v~~~~ 561 (578)
T PRK06112 557 VITDP 561 (578)
T ss_pred EEcCc
Confidence 99853
No 105
>PRK07064 hypothetical protein; Provisional
Probab=98.85 E-value=3.2e-09 Score=116.51 Aligned_cols=116 Identities=24% Similarity=0.361 Sum_probs=87.0
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
.|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+...
T Consensus 413 aAiGa~lA~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~y--------------g~~~~~-------- 468 (544)
T PRK07064 413 MAIGAALAGPGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGY--------------GVIRNI-------- 468 (544)
T ss_pred hhhhhhhhCcCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChh--------------HHHHHH--------
Confidence 378889999999999999999998 55677999999999999999999865 323110
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
++.....+....++..+++..++++||.++..+ ++.++|..+++++.+ .++|++|
T Consensus 469 --------------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lI 523 (544)
T PRK07064 469 --------------------QDAQYGGRRYYVELHTPDFALLAASLGLPHWRV---TSADDFEAVLREALA--KEGPVLV 523 (544)
T ss_pred --------------------HHHhcCCccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHc--CCCCEEE
Confidence 000000001112233467778899999988755 789999999999987 6899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
+|.+.
T Consensus 524 eV~~~ 528 (544)
T PRK07064 524 EVDML 528 (544)
T ss_pred EEEcc
Confidence 99985
No 106
>PRK08617 acetolactate synthase; Reviewed
Probab=98.84 E-value=4.4e-09 Score=115.56 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=86.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ |...+|.+|.++++|+++||.||+.+ +.+..
T Consensus 423 aiGa~la~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~--------------~~~~~---------- 476 (552)
T PRK08617 423 AIAAALVRPGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHY--------------NMVEF---------- 476 (552)
T ss_pred HHhhHhhcCCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------chHHH----------
Confidence 67889999999999999999998 66677999999999999999999865 22210
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.+.....+....++..+++..++++||.++..+ ++.++|.++++++.+ .++|++|+
T Consensus 477 -------------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lie 532 (552)
T PRK08617 477 -------------------QEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV---TSPDELEPVLREALA--TDGPVVID 532 (552)
T ss_pred -------------------HHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 000000000011222356678899999998865 889999999999987 68999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
|.+.+
T Consensus 533 v~~~~ 537 (552)
T PRK08617 533 IPVDY 537 (552)
T ss_pred EEecc
Confidence 99854
No 107
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.84 E-value=3.5e-09 Score=116.39 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=85.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+||+|||+|+ +..++|.+|+++++|+++||.||+.+ +.+....+..
T Consensus 424 aiGa~la~p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~--------------~~~~~~~~~~----- 482 (557)
T PRK08199 424 AIAAKLLFPERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMY--------------GTIRMHQERE----- 482 (557)
T ss_pred HHHHHHhCCCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------hHHHHHHHHh-----
Confidence 67888999999999999999998 66788999999999999999999865 2221100000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHH-HhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEY-ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
....+ ..++..+++..++++||+++... ++.++|.++++++.+ .++|++|
T Consensus 483 ------------------------~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~li 533 (557)
T PRK08199 483 ------------------------YPGRVSGTDLTNPDFAALARAYGGHGETV---ERTEDFAPAFERALA--SGKPALI 533 (557)
T ss_pred ------------------------cCCccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00001 11222345677899999998744 578999999999987 6899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
+|.+.
T Consensus 534 ~v~~~ 538 (557)
T PRK08199 534 EIRID 538 (557)
T ss_pred EEEeC
Confidence 99984
No 108
>PRK08322 acetolactate synthase; Reviewed
Probab=98.82 E-value=6.2e-09 Score=114.30 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=87.9
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.....
T Consensus 415 aiGa~la~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~--------------g~~~~~~~------- 471 (547)
T PRK08322 415 AIAAKLVHPDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAY--------------GMIRWKQE------- 471 (547)
T ss_pred HHHHHHhCCCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCc--------------chHHHHHH-------
Confidence 67888999999999999999998 55677999999999999999999865 22211000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
....+.+..++..+++..++++||+++..+ .+.++|.++++++.+ .++|++|+
T Consensus 472 ----------------------~~~~~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lIe 524 (547)
T PRK08322 472 ----------------------NMGFEDFGLDFGNPDFVKYAESYGAKGYRV---ESADDLLPTLEEALA--QPGVHVID 524 (547)
T ss_pred ----------------------hhcCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000011112222457788899999998855 789999999999987 68999999
Q ss_pred EEccCCCC
Q 009809 162 VVTEKGRG 169 (525)
Q Consensus 162 v~t~kg~g 169 (525)
|.+.....
T Consensus 525 v~v~~~~~ 532 (547)
T PRK08322 525 CPVDYSEN 532 (547)
T ss_pred EEecCccC
Confidence 99854333
No 109
>PRK05858 hypothetical protein; Provisional
Probab=98.82 E-value=6e-09 Score=114.16 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=86.1
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|++.++..++++|||++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+....+..
T Consensus 415 ~aiGa~la~p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y--------------~~~~~~~~~~---- 474 (542)
T PRK05858 415 YALAARLARPSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIW--------------GLEKHPMEAL---- 474 (542)
T ss_pred HHHHHHHhCCCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCch--------------hhHHHHHHHh----
Confidence 367889999999999999999998 55567999999999999999999865 2221100000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
.......+. -.+++..+.++||..+..+ .+.++|..+++++.+ .++|++
T Consensus 475 -------------------------~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~l 524 (542)
T PRK05858 475 -------------------------YGYDVAADLRPGTRYDEVVRALGGHGELV---TVPAELGPALERAFA--SGVPYL 524 (542)
T ss_pred -------------------------cCCccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCcEE
Confidence 000001112 2356678899999988755 789999999999988 789999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|++.+.+
T Consensus 525 Iev~~~~ 531 (542)
T PRK05858 525 VNVLTDP 531 (542)
T ss_pred EEEEECC
Confidence 9999953
No 110
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=98.81 E-value=5.3e-09 Score=115.36 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=85.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|++++|||+|+ +...+|.++.++++|+++||.||+.+ |.+.+.....
T Consensus 417 AiGa~la~p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~y--------------g~i~~~~~~~----- 475 (575)
T TIGR02720 417 AIAAKLNYPDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTY--------------GFIKDEQEDT----- 475 (575)
T ss_pred HHHHHHhCCCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------HHHHHHHHHh-----
Confidence 67889999999999999999998 55677999999999999999999866 3231110000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhh--hcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK--NTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~--~~~~~~P~~ 159 (525)
..+....++-.+++..++++||.++... ++.++|.++++++. + .++|++
T Consensus 476 ------------------------~~~~~~~~~~~~df~~iA~a~G~~~~~v---~~~~el~~al~~a~~~~--~~~p~l 526 (575)
T TIGR02720 476 ------------------------NQPLIGVDFNDADFAKIAEGVGAVGFRV---NKIEQLPAVFEQAKAIK--QGKPVL 526 (575)
T ss_pred ------------------------CCCcccccCCCCCHHHHHHHCCCEEEEe---CCHHHHHHHHHHHHhhC--CCCcEE
Confidence 0000111222456778899999998744 78899999999997 5 689999
Q ss_pred EEEEcc
Q 009809 160 IHVVTE 165 (525)
Q Consensus 160 i~v~t~ 165 (525)
|+|.+.
T Consensus 527 iev~i~ 532 (575)
T TIGR02720 527 IDAKIT 532 (575)
T ss_pred EEEEeC
Confidence 999984
No 111
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.81 E-value=5.1e-09 Score=115.76 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=86.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|||++|||+|+ |...+|.+|.++++|+++||.||+.+ |.+.+...
T Consensus 446 aiGa~lA~p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~--------------~~i~~~q~------- 502 (587)
T PRK06965 446 AMGIKMAHPDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYL--------------GMVRQWQE------- 502 (587)
T ss_pred HHHHHHhCCCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcc--------------hHHHHHHH-------
Confidence 67889999999999999999997 66677999999999999999999866 33311000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
......+. ..+ ..+++..+.++||+++..+ ++.++|.++++++.+. .++|++
T Consensus 503 ----------------------~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~l 556 (587)
T PRK06965 503 ----------------------IEYSKRYSHSYMDALPDFVKLAEAYGHVGMRI---EKTSDVEPALREALRL-KDRTVF 556 (587)
T ss_pred ----------------------HhcCCCccccCCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhc-CCCcEE
Confidence 00000010 111 1356678899999998855 8899999999999762 378999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+.+
T Consensus 557 ieV~i~~ 563 (587)
T PRK06965 557 LDFQTDP 563 (587)
T ss_pred EEEEecc
Confidence 9999853
No 112
>PRK06154 hypothetical protein; Provisional
Probab=98.80 E-value=5.4e-09 Score=114.92 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=84.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ |...+|.+|.++++|+++||.||+.+. .+....
T Consensus 440 aiGa~la~p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg--------------~~~~~~-------- 495 (565)
T PRK06154 440 AMGAKLARPDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMG--------------GYDKVM-------- 495 (565)
T ss_pred HHHHHHhCCCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccc--------------eeehhh--------
Confidence 67889999999999999999997 666779999999999999999998662 111000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc-CCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT-KTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~-~~~~P~~i 160 (525)
+. ........+ +.+++..+.++||.++..+ ++.++|..+++++.+. ..++|++|
T Consensus 496 --------------------~~-~~~~~~~~~-~~~df~~lA~a~G~~g~~V---~~~~el~~al~~a~~~~~~~~p~lI 550 (565)
T PRK06154 496 --------------------PV-STTKYRATD-ISGDYAAIARALGGYGERV---EDPEMLVPALLRALRKVKEGTPALL 550 (565)
T ss_pred --------------------hh-hcCcccccC-CCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhccCCCeEEE
Confidence 00 000000011 1346678899999998855 6899999999999752 15789999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
+|.+.
T Consensus 551 ev~v~ 555 (565)
T PRK06154 551 EVITS 555 (565)
T ss_pred EEEeC
Confidence 99984
No 113
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.80 E-value=6.4e-09 Score=115.07 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=86.0
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|++.++..++++||||+|||+|+ +...+|.+|.++++|+++||.||+.+ +.+....
T Consensus 438 aaiGa~lA~p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y--------------~~i~~~q------- 494 (595)
T PRK09107 438 AALGVQIAHPDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYM--------------GMVRQWQ------- 494 (595)
T ss_pred HHHHHHHhCCCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------HHHHHHH-------
Confidence 367889999999999999999998 55677999999999999999999966 3221100
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV 158 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~ 158 (525)
+.. ....+. ... ..+++..+.++||.++..+ .+.++|.++++++.+ .++|+
T Consensus 495 ---------------------~~~-~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~ 547 (595)
T PRK09107 495 ---------------------QLL-HGNRLSHSYTEAMPDFVKLAEAYGAVGIRC---EKPGDLDDAIQEMID--VDKPV 547 (595)
T ss_pred ---------------------HHH-hCCccccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCE
Confidence 000 000000 001 1356678899999988855 789999999999987 68999
Q ss_pred EEEEEcc
Q 009809 159 LIHVVTE 165 (525)
Q Consensus 159 ~i~v~t~ 165 (525)
+|+|.+.
T Consensus 548 lIeV~i~ 554 (595)
T PRK09107 548 IFDCRVA 554 (595)
T ss_pred EEEEEec
Confidence 9999985
No 114
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.80 E-value=6e-09 Score=115.85 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=86.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..+++.|||++|||+|+ |...+|.+|.++++|+++||.||+.+ |.+....+
T Consensus 443 AiGA~lA~p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~--------------g~i~~~q~------- 499 (616)
T PRK07418 443 AMGVKVALPDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQ--------------GMVRQWQE------- 499 (616)
T ss_pred HHHHHHhCCCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------hHHHHHHH-------
Confidence 67889999999999999999998 56677999999999999999999965 33311000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc--ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM--ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV 158 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~ 158 (525)
......+. .++ ..+++..+.++||.++..+ ++.++|.++++++.+ .++|+
T Consensus 500 ----------------------~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V---~~~~el~~al~~a~~--~~~p~ 552 (616)
T PRK07418 500 ----------------------SFYGERYSASNMEPGMPDFVKLAEAFGVKGMVI---SERDQLKDAIAEALA--HDGPV 552 (616)
T ss_pred ----------------------HhcCCCceeecCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCE
Confidence 00000011 111 1246678899999998855 789999999999987 68899
Q ss_pred EEEEEccC
Q 009809 159 LIHVVTEK 166 (525)
Q Consensus 159 ~i~v~t~k 166 (525)
+|+|.+..
T Consensus 553 lIeV~i~~ 560 (616)
T PRK07418 553 LIDVHVRR 560 (616)
T ss_pred EEEEEecC
Confidence 99999853
No 115
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.79 E-value=6.5e-09 Score=114.45 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=84.9
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|++.+++.++++|+||+|||+|+ +...+|.+|.++++|+++||.||+.+ +.+.......
T Consensus 430 ~aiGa~lA~p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~--------------~~~~~~q~~~---- 489 (570)
T PRK06725 430 AAIGAQLAKEEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFL--------------GMVRQWQEMF---- 489 (570)
T ss_pred HHHhhHhhcCCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCcc--------------HHHHHHHHHh----
Confidence 367889999999999999999997 44566999999999999999999865 2221000000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHH-HhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEY-ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+ ..++..+++..+.++||.+...+ ++.+++..+++++.+ .++|++
T Consensus 490 -------------------------~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~~p~l 539 (570)
T PRK06725 490 -------------------------YENRLSESKIGSPDFVKVAEAYGVKGLRA---TNSTEAKQVMLEAFA--HEGPVV 539 (570)
T ss_pred -------------------------cCCccccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEE
Confidence 00001 01112346667899999998854 789999999999988 689999
Q ss_pred EEEEcc
Q 009809 160 IHVVTE 165 (525)
Q Consensus 160 i~v~t~ 165 (525)
|+|.+.
T Consensus 540 iev~id 545 (570)
T PRK06725 540 VDFCVE 545 (570)
T ss_pred EEEEeC
Confidence 999984
No 116
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.79 E-value=1.1e-08 Score=113.09 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=85.9
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
.|++.++..++++|||++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.+.........
T Consensus 426 aaiGa~lA~pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~y--------------g~i~~~q~~~~~~~ 489 (588)
T TIGR01504 426 AALGVCAADPKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYL--------------GLIRQAQRAFDMDY 489 (588)
T ss_pred HHHhhhhhCCCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------HHHHHHHHHhcccc
Confidence 378899999999999999999998 55667999999999999999999866 33321111000000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPV 158 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~ 158 (525)
.+. ...... ..-..+...+++..++++||..+..+ ++.++|.++++++.+. ..++|+
T Consensus 490 ~~~--------------~~~~~~----~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~~~~~~~p~ 548 (588)
T TIGR01504 490 CVQ--------------LAFENI----NSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAPAFEQAKALMAEHRVPV 548 (588)
T ss_pred cce--------------eecccc----ccccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhhcccCCCcE
Confidence 000 000000 00000011356678899999988855 7899999999998741 158999
Q ss_pred EEEEEcc
Q 009809 159 LIHVVTE 165 (525)
Q Consensus 159 ~i~v~t~ 165 (525)
+|+|.+.
T Consensus 549 lIeV~i~ 555 (588)
T TIGR01504 549 VVEVILE 555 (588)
T ss_pred EEEEEec
Confidence 9999983
No 117
>PRK12474 hypothetical protein; Provisional
Probab=98.78 E-value=9.5e-09 Score=111.98 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=84.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ |...+|.+|.++++|+++||.||+.+ +.+.+.+........
T Consensus 398 AiGa~lA~p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y--------------~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 398 AAGAAVAAPDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSY--------------AILNGELQRVGAQGA 461 (518)
T ss_pred HHHHHHHCCCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcc--------------hHHHHHHHhhcCCCC
Confidence 67889999999999999999998 66677999999999999999999866 322111100000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccc--cCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMI--SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
++ . .....+.. .+++..+.++||.+...+ .+.++|..+++++.+ .++|++
T Consensus 462 ~~----------------------~-~~~~~~~~~~~~d~~~lA~a~G~~~~rv---~~~~eL~~al~~a~~--~~~p~l 513 (518)
T PRK12474 462 GR----------------------N-ALSMLDLHNPELNWMKIAEGLGVEASRA---TTAEEFSAQYAAAMA--QRGPRL 513 (518)
T ss_pred Cc----------------------c-ccccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 00 0 00001111 236678899999988855 779999999999987 689999
Q ss_pred EEEEc
Q 009809 160 IHVVT 164 (525)
Q Consensus 160 i~v~t 164 (525)
|+|.+
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99864
No 118
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.78 E-value=2.3e-07 Score=83.90 Aligned_cols=144 Identities=14% Similarity=0.191 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecCCCCCcchHHHHH---h---------------CCCCeeeccchHHHHHHHHHHHhcC
Q 009809 205 TYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLR---R---------------FPTRCFDVGIAEQHAVTFAAGLACE 265 (525)
Q Consensus 205 ~a~~~~l~~~~~~d~-~~v~~~~D~~~s~~l~~~~~---~---------------~p~r~~~~gIaE~~~~~~a~G~A~~ 265 (525)
+++++.|.++++.+| ++.+++||.-.|..+....+ + -+++-+..-++|+.+.|+..|..+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 567888999999887 78899999988877643211 0 1234555669999999999999999
Q ss_pred CCeEEEeechhhH---HHHHHHHHHHhhc-------CCCC-eEEEEcCCCC-CCCCCCCCcchhhhhhhhc-CCC-cEEE
Q 009809 266 GLKPFCAIYSSFM---QRAYDQVVHDVDL-------QKLP-VRFAMDRAGL-VGADGPTHCGSFDVTFMAC-LPN-MVVM 331 (525)
Q Consensus 266 G~~pi~~t~~~F~---~~a~dqi~~~~~~-------~~~p-vvi~~~~~G~-~g~~G~tH~~~~d~~~~~~-ipg-~~v~ 331 (525)
|.+.++.+|.+|+ .-++.|-..++-. ...| +.++.+.... .+++|.|||...-+..+.. .|+ +.||
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 9999999999995 4555553333211 1222 4444443333 5789999998766544443 333 6799
Q ss_pred ccCCHHHHHHHHHHHHh
Q 009809 332 APSDEAELFHMVATAAA 348 (525)
Q Consensus 332 ~P~~~~e~~~~~~~a~~ 348 (525)
.|.|++-+..++.+|+.
T Consensus 162 lPpDANtlLav~~~clr 178 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCLR 178 (179)
T ss_dssp E-SSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHhc
Confidence 99999999999999874
No 119
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.78 E-value=1e-08 Score=113.05 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=85.7
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
.|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+.+.....
T Consensus 429 aaiGa~la~p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y--------------~~i~~~q~~~---- 488 (572)
T PRK08979 429 AAMGVKFAMPDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFL--------------GMVKQWQDMI---- 488 (572)
T ss_pred HHHhhhhhCCCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCcc--------------HHHHHHHHHH----
Confidence 378899999999999999999998 55677999999999999999999866 3331110000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV 158 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~ 158 (525)
....+. ..+ ..+++..+.++||.+...+ .+.++|..+++++.+. .++|+
T Consensus 489 -------------------------~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~ 539 (572)
T PRK08979 489 -------------------------YQGRHSHSYMDSVPDFAKIAEAYGHVGIRI---SDPDELESGLEKALAM-KDRLV 539 (572)
T ss_pred -------------------------hCCcccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcE
Confidence 000000 011 1356678899999987755 7899999999999862 38899
Q ss_pred EEEEEcc
Q 009809 159 LIHVVTE 165 (525)
Q Consensus 159 ~i~v~t~ 165 (525)
+|+|.+.
T Consensus 540 lIev~i~ 546 (572)
T PRK08979 540 FVDINVD 546 (572)
T ss_pred EEEEEeC
Confidence 9999885
No 120
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.77 E-value=8.9e-09 Score=113.78 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=85.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+......
T Consensus 439 aiGaala~p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y--------------~~i~~~q~~------ 496 (585)
T CHL00099 439 AIGAQIAHPNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQ--------------GMVRQWQQA------ 496 (585)
T ss_pred HHHHHHhCCCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------hHHHHHHHH------
Confidence 67888999999999999999997 66677999999999999999999865 323111000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-h--ccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-R--GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV 158 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~ 158 (525)
.....+. . +...+++..+.++||.++... ++.++|.++++++++ .++|+
T Consensus 497 -----------------------~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~ 548 (585)
T CHL00099 497 -----------------------FYGERYSHSNMEEGAPDFVKLAEAYGIKGLRI---KSRKDLKSSLKEALD--YDGPV 548 (585)
T ss_pred -----------------------hcCCCcccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCE
Confidence 0000000 0 111345667899999998855 779999999999988 68999
Q ss_pred EEEEEcc
Q 009809 159 LIHVVTE 165 (525)
Q Consensus 159 ~i~v~t~ 165 (525)
+|+|.+.
T Consensus 549 liev~v~ 555 (585)
T CHL00099 549 LIDCQVI 555 (585)
T ss_pred EEEEEEC
Confidence 9999995
No 121
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.75 E-value=1.3e-08 Score=112.01 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=84.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+.. ..+|.+|.++++|+++||.||+.+ +.+....+..
T Consensus 421 aiGa~la~~~~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~~~--------------~~~~~~q~~~----- 479 (558)
T TIGR00118 421 AIGAKVAKPESTVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNRYL--------------GMVRQWQELF----- 479 (558)
T ss_pred HHhhhhhCCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCCch--------------HHHHHHHHHh-----
Confidence 6788999999999999999999864 446999999999999999999865 2221100000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hccc-cCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+. .+.. .+++..++++||+++... ++.++|..+++++.+ .++|++
T Consensus 480 ------------------------~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~~p~l 530 (558)
T TIGR00118 480 ------------------------YEERYSHTHMGSLPDFVKLAEAYGIKGIRI---EKPEELDEKLKEALS--SNEPVL 530 (558)
T ss_pred ------------------------cCCceeeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 000000 0111 245677899999998754 668999999999987 689999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+.+
T Consensus 531 iev~~~~ 537 (558)
T TIGR00118 531 LDVVVDK 537 (558)
T ss_pred EEEEeCC
Confidence 9999964
No 122
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.75 E-value=1.4e-08 Score=111.87 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=84.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+. ...+|.+|.++++|+++||.||+.+ +.+.+... .
T Consensus 423 aiGa~la~p~~~vv~i~GDG~f~m--~~~eL~Ta~~~~lpvi~vV~NN~~~--------------~~i~~~~~-~----- 480 (563)
T PRK08527 423 ALGAKLAVPDKVVINFTGDGSILM--NIQELMTAVEYKIPVINIILNNNFL--------------GMVRQWQT-F----- 480 (563)
T ss_pred HHHHHHhCCCCcEEEEecCchhcc--cHHHHHHHHHhCCCeEEEEEECCcc--------------hhHHHHHH-h-----
Confidence 678889999999999999999985 4455999999999999999999865 22211000 0
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
.....+. .++ ..+++..++++||.++... ++.++|.++++++.+ .++|++
T Consensus 481 -----------------------~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 532 (563)
T PRK08527 481 -----------------------FYEERYSETDLSTQPDFVKLAESFGGIGFRV---TTKEEFDKALKEALE--SDKVAL 532 (563)
T ss_pred -----------------------hcCCceeeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 0000000 011 1245567899999988755 789999999999987 689999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+.+
T Consensus 533 ieV~v~~ 539 (563)
T PRK08527 533 IDVKIDR 539 (563)
T ss_pred EEEEECC
Confidence 9999854
No 123
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.75 E-value=1.1e-08 Score=112.65 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=85.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+....+
T Consensus 423 aiGa~la~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y--------------~~i~~~~~------- 479 (561)
T PRK06048 423 AIGAKVGKPDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYL--------------GMVRQWQE------- 479 (561)
T ss_pred HHHHHHhCCCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCcc--------------HHHHHHHH-------
Confidence 67888999999999999999997 55677999999999999999999865 32211000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
......+. .++ ..+++..+.++||.++... ++.++|.++++++.+ .++|++
T Consensus 480 ----------------------~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~al~~a~~--~~~p~l 532 (561)
T PRK06048 480 ----------------------LFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV---EKPSEVRPAIEEAVA--SDRPVV 532 (561)
T ss_pred ----------------------HHcCCcccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 00000111 111 1356678899999998855 789999999999987 689999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+..
T Consensus 533 iev~~~~ 539 (561)
T PRK06048 533 IDFIVEC 539 (561)
T ss_pred EEEEecC
Confidence 9999853
No 124
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=98.75 E-value=1.1e-08 Score=112.33 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=86.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.+.
T Consensus 410 AiGa~la~p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~--------------~~~~~~--------- 464 (548)
T PRK08978 410 AIGAQVARPDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRL--------------GMVRQW--------- 464 (548)
T ss_pred HHHHHHhCCCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------HHHHHH---------
Confidence 67889999999999999999998 55677999999999999999999865 333110
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
++.....+....++ ..+++..++++||.++..+ .+.++|.++++++.+ .++|++|
T Consensus 465 -------------------~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 520 (548)
T PRK08978 465 -------------------QQLFFDERYSETDLSDNPDFVMLASAFGIPGQTI---TRKDQVEAALDTLLN--SEGPYLL 520 (548)
T ss_pred -------------------HHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00000000001111 2356778899999998865 889999999999987 6899999
Q ss_pred EEEccC
Q 009809 161 HVVTEK 166 (525)
Q Consensus 161 ~v~t~k 166 (525)
+|.+..
T Consensus 521 eV~id~ 526 (548)
T PRK08978 521 HVSIDE 526 (548)
T ss_pred EEEecC
Confidence 999853
No 125
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.74 E-value=1.2e-08 Score=112.63 Aligned_cols=116 Identities=19% Similarity=0.171 Sum_probs=85.6
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+....+..
T Consensus 432 AiGa~la~p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y--------------~~i~~~q~~~----- 490 (574)
T PRK06466 432 AMGVKLAFPDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGAL--------------GMVRQWQDMQ----- 490 (574)
T ss_pred HHHHHHhCCCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------HHHHHHHHHh-----
Confidence 67889999999999999999998 56677999999999999999999866 3331100000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+. ..+ ..+++..++++||.++..+ .+.++|.++++++.+. .++|++
T Consensus 491 ------------------------~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~-~~~p~l 542 (574)
T PRK06466 491 ------------------------YEGRHSHSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKPKLEEAFAM-KDRLVF 542 (574)
T ss_pred ------------------------cCCceeecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEE
Confidence 000000 011 1246677899999988755 8899999999999872 288999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+.+
T Consensus 543 Iev~i~~ 549 (574)
T PRK06466 543 IDIYVDR 549 (574)
T ss_pred EEEEeCC
Confidence 9999854
No 126
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.74 E-value=2.6e-08 Score=102.76 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=80.7
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCC-CEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l-~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++..++++|||+.|||++. |..++|.++++.++ |+++||.||+.+.. .+.....+
T Consensus 230 AlG~ala~p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~-----~g~q~~~~------------- 289 (361)
T TIGR03297 230 ALGLALARPDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS-----VGGQPTVS------------- 289 (361)
T ss_pred HHHHHHHCCCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc-----cCCcCCCC-------------
Confidence 67778889999999999999997 56678999998884 89999999986521 00000000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCce-EeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-YIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
...++..+++++|+. .. ..++.++|.++++++++ .++|++
T Consensus 290 ----------------------------------~~~d~~~iA~a~G~~~~~---~v~~~~eL~~al~~a~~--~~gp~l 330 (361)
T TIGR03297 290 ----------------------------------QHLDFAQIAKACGYAKVY---EVSTLEELETALTAASS--ANGPRL 330 (361)
T ss_pred ----------------------------------CCCCHHHHHHHCCCceEE---EeCCHHHHHHHHHHHHh--CCCcEE
Confidence 012334568899974 33 23899999999999987 689999
Q ss_pred EEEEccCCCC
Q 009809 160 IHVVTEKGRG 169 (525)
Q Consensus 160 i~v~t~kg~g 169 (525)
|+|++.+|..
T Consensus 331 IeV~v~~g~~ 340 (361)
T TIGR03297 331 IEVKVRPGSR 340 (361)
T ss_pred EEEEecCCCc
Confidence 9999976654
No 127
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.74 E-value=1.2e-08 Score=112.47 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=84.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+. ...+|.+|.++++|+++||.||+.+ +.+....+
T Consensus 433 AiGaala~p~~~vv~i~GDGsf~m--~~~eL~ta~r~~lpi~ivV~NN~~~--------------~~i~~~~~------- 489 (571)
T PRK07710 433 AIGAQLAKPDETVVAIVGDGGFQM--TLQELSVIKELSLPVKVVILNNEAL--------------GMVRQWQE------- 489 (571)
T ss_pred HHHHHHhCCCCcEEEEEcchHHhh--hHHHHHHHHHhCCCeEEEEEECchH--------------HHHHHHHH-------
Confidence 678889999999999999999984 4556999999999999999999865 32211000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+.+. .++ ..+++..+.++||.++... ++.++|..+++++.+ .++|++
T Consensus 490 ----------------------~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 542 (571)
T PRK07710 490 ----------------------EFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI---DDELEAKEQLQHAIE--LQEPVV 542 (571)
T ss_pred ----------------------HHhCCcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 00000010 111 1245667899999998855 778999999999988 689999
Q ss_pred EEEEcc
Q 009809 160 IHVVTE 165 (525)
Q Consensus 160 i~v~t~ 165 (525)
|+|.+.
T Consensus 543 ieV~vd 548 (571)
T PRK07710 543 IDCRVL 548 (571)
T ss_pred EEEEec
Confidence 999995
No 128
>PRK07586 hypothetical protein; Validated
Probab=98.74 E-value=1.4e-08 Score=110.59 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=83.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+.+..+.... .
T Consensus 394 aiGa~lA~p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y--------------~~~~~~~~~~~~-~- 455 (514)
T PRK07586 394 ATGAAVACPDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAY--------------AILRGELARVGA-G- 455 (514)
T ss_pred HHHHHHhCCCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchh--------------HHHHHHHHHhcC-C-
Confidence 67888999999999999999998 66788999999999999999999866 323111000000 0
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccc--cCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMI--SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
..++ +...+ .+.. .+++..+.++||+++..+ ++.++|..+++++.+ .++|++
T Consensus 456 -------------~~~~-------~~~~~-~~~~~~~~d~~~lA~a~G~~~~~V---~~~~el~~al~~a~~--~~~p~l 509 (514)
T PRK07586 456 -------------NPGP-------RALDM-LDLDDPDLDWVALAEGMGVPARRV---TTAEEFADALAAALA--EPGPHL 509 (514)
T ss_pred -------------CCCc-------ccccc-ccCCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 0000 00000 0111 246678899999988855 779999999999987 689999
Q ss_pred EEEE
Q 009809 160 IHVV 163 (525)
Q Consensus 160 i~v~ 163 (525)
|+|.
T Consensus 510 iev~ 513 (514)
T PRK07586 510 IEAV 513 (514)
T ss_pred EEEE
Confidence 9986
No 129
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.73 E-value=6.1e-09 Score=113.85 Aligned_cols=114 Identities=24% Similarity=0.286 Sum_probs=81.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ .++|++|.++++|+++||.||+.+ +.+.. .....
T Consensus 416 aiGa~la~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~--------------~~~~~-~~~~~---- 474 (530)
T PRK07092 416 AVGVALAQPGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRY--------------GALRW-FAPVF---- 474 (530)
T ss_pred HHHHHHhCCCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHH--------------HHHHH-HHHhh----
Confidence 5677888899999999999999966 578999999999999999999854 21110 00000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+ ..+....++...++..++++||+++..+ ++.+++.++++++.+ .++|++|+
T Consensus 475 ---------------~--------~~~~~~~~~~~~d~~~~a~~~G~~~~~v---~~~~~l~~al~~a~~--~~~p~lie 526 (530)
T PRK07092 475 ---------------G--------VRDVPGLDLPGLDFVALARGYGCEAVRV---SDAAELADALARALA--ADGPVLVE 526 (530)
T ss_pred ---------------C--------CCCCCCCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 0000000111234567799999998844 578999999999987 78999999
Q ss_pred EEc
Q 009809 162 VVT 164 (525)
Q Consensus 162 v~t 164 (525)
+.+
T Consensus 527 v~~ 529 (530)
T PRK07092 527 VEV 529 (530)
T ss_pred EEc
Confidence 976
No 130
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=98.73 E-value=1.6e-08 Score=112.01 Aligned_cols=115 Identities=22% Similarity=0.353 Sum_probs=83.6
Q ss_pred cccccccCCCCeEEEEEcccccccchh-HHHHHhcccc-----CCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQA-YEAMNNAGYL-----DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSR 75 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~-~Ealn~A~~~-----~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~ 75 (525)
|++.++..++++|+||+|||+|+ |. ..+|.+|.++ ++|+++||.||+.+ +.+......
T Consensus 424 aiGa~la~p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~--------------~~i~~~q~~ 487 (597)
T PRK08273 424 AIAAKFAHPDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDL--------------NQVTWEQRV 487 (597)
T ss_pred HHHHHHhCCCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcc--------------hHHHHHHHH
Confidence 67889999999999999999997 44 3559999988 89999999999865 222111000
Q ss_pred hhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHH--hccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcC
Q 009809 76 LQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA--RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTK 153 (525)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~ 153 (525)
.. +. ..+. .++-.+++..+.++||+.+..+ .+.++|..+++++.+
T Consensus 488 ~~-------------------~~---------~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~-- 534 (597)
T PRK08273 488 ME-------------------GD---------PKFEASQDLPDVPYARFAELLGLKGIRV---DDPEQLGAAWDEALA-- 534 (597)
T ss_pred hc-------------------CC---------CcccccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--
Confidence 00 00 0000 0111245677899999998855 789999999999987
Q ss_pred CCCCEEEEEEcc
Q 009809 154 TTGPVLIHVVTE 165 (525)
Q Consensus 154 ~~~P~~i~v~t~ 165 (525)
.++|++|+|.+.
T Consensus 535 ~~~p~lIeV~~~ 546 (597)
T PRK08273 535 ADRPVVLEVKTD 546 (597)
T ss_pred CCCCEEEEEEeC
Confidence 689999999984
No 131
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.73 E-value=1.5e-08 Score=111.90 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=85.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.+..+.
T Consensus 430 aiGa~la~p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~y--------------g~i~~~q~~------ 487 (574)
T PRK07979 430 ALGVKMALPEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYL--------------GMVKQWQDM------ 487 (574)
T ss_pred HHHHHHhCCCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------hHHHHHHHH------
Confidence 67889999999999999999997 66777999999999999999999866 333111000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHH-Hhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc-CCCCCE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEY-ARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT-KTTGPV 158 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~-~~~~P~ 158 (525)
.....+ ...+ ..+++..+.++||.+...+ .+.++|..+++++.+. ..++|+
T Consensus 488 -----------------------~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~al~~a~~~~~~~~p~ 541 (574)
T PRK07979 488 -----------------------IYSGRHSQSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESKLSEALEQVRNNRLV 541 (574)
T ss_pred -----------------------hcCCccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhccCCCCcE
Confidence 000000 0111 1356778899999987755 7899999999999762 137899
Q ss_pred EEEEEcc
Q 009809 159 LIHVVTE 165 (525)
Q Consensus 159 ~i~v~t~ 165 (525)
+|+|.+.
T Consensus 542 lIeV~i~ 548 (574)
T PRK07979 542 FVDVTVD 548 (574)
T ss_pred EEEEEEC
Confidence 9999885
No 132
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.73 E-value=2.2e-08 Score=110.29 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=83.1
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|++.+++.++++|+|++|||+|+.+...++|++|.++++|+++||.||+.+ |.+....+.+...
T Consensus 438 ~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~y--------------g~~~~~~~~~~~~- 502 (569)
T PRK08327 438 AALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGW--------------LAVKEAVLEVYPE- 502 (569)
T ss_pred HHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccc--------------ccchhHHhhhCcc-
Confidence 3678899999999999999999998754557999999999999999999865 2121000000000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHH-Hhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCC
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEY-ARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTG 156 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~ 156 (525)
++. . ....+ ...+ -.+++..++++||+.+..+ ++.++|..+++++.+. ..++
T Consensus 503 ~~~----------------~-----~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~g 558 (569)
T PRK08327 503 GYA----------------A-----RKGTFPGTDFDPRPDFAKIAEAFGGYGERV---EDPEELKGALRRALAAVRKGRR 558 (569)
T ss_pred ccc----------------c-----cccccccccCCCCCCHHHHHHhCCCCceEe---CCHHHHHHHHHHHHHHHhcCCC
Confidence 000 0 00000 0011 1235567899999987744 5889999999888652 1267
Q ss_pred CEEEEEEc
Q 009809 157 PVLIHVVT 164 (525)
Q Consensus 157 P~~i~v~t 164 (525)
|++|+|.+
T Consensus 559 p~liev~v 566 (569)
T PRK08327 559 SAVLDVIV 566 (569)
T ss_pred cEEEEEEc
Confidence 99999986
No 133
>PLN02470 acetolactate synthase
Probab=98.72 E-value=1.5e-08 Score=112.05 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=85.6
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.+....... ..
T Consensus 435 aiGa~la~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~y--------------g~i~~~~~~~~~-~~ 497 (585)
T PLN02470 435 AIGAAAANPDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHL--------------GMVVQWEDRFYK-AN 497 (585)
T ss_pred HHHHHHhCCCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------hHHHHHHHHHhC-Cc
Confidence 67889999999999999999998 55677999999999999999999865 333110000000 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhc-----cccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCC
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARG-----MISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTG 156 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~ 156 (525)
....+... ...+++..++++||.++..+ ++.++|.++++++.+ .++
T Consensus 498 ------------------------~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~al~~a~~--~~~ 548 (585)
T PLN02470 498 ------------------------RAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV---TRKSDLREAIQKMLD--TPG 548 (585)
T ss_pred ------------------------eeeeecCccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCC
Confidence 00000000 01246678899999998755 789999999999988 689
Q ss_pred CEEEEEEccC
Q 009809 157 PVLIHVVTEK 166 (525)
Q Consensus 157 P~~i~v~t~k 166 (525)
|++|+|.+..
T Consensus 549 p~lieV~i~~ 558 (585)
T PLN02470 549 PYLLDVIVPH 558 (585)
T ss_pred CEEEEEEeCC
Confidence 9999999953
No 134
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.72 E-value=1.6e-08 Score=111.76 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=84.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+||+|||+|+. ..++|.+|.++++|+++||.||+.+ +.+.+.....
T Consensus 430 aiGa~la~p~~~vv~i~GDG~f~~--~~~eL~ta~~~~lpv~~vV~NN~~~--------------~~i~~~q~~~----- 488 (574)
T PRK06882 430 AIGVKFAHPEATVVCVTGDGSIQM--NIQELSTAKQYDIPVVIVSLNNRFL--------------GMVKQWQDLI----- 488 (574)
T ss_pred HHHHHhhcCCCcEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEECchh--------------HHHHHHHHHh-----
Confidence 678889999999999999999974 5678999999999999999999865 2221100000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+. ... ..+++..+.++||.++..+ ++.++|..+++++.+. .++|++
T Consensus 489 ------------------------~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~l 540 (574)
T PRK06882 489 ------------------------YSGRHSQVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEEKLTQAFSI-KDKLVF 540 (574)
T ss_pred ------------------------cCCcccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHhc-CCCcEE
Confidence 000000 000 1245667899999998855 7899999999999873 378999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+..
T Consensus 541 iev~i~~ 547 (574)
T PRK06882 541 VDVNVDE 547 (574)
T ss_pred EEEEecC
Confidence 9999853
No 135
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=98.72 E-value=2e-08 Score=111.57 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=86.1
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
.|++.++..+++.|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.....
T Consensus 455 aaiGa~la~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~--------------g~i~~~q~------ 512 (612)
T PRK07789 455 AAMGAKVGRPDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNL--------------GMVRQWQT------ 512 (612)
T ss_pred hHHhhhccCCCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCch--------------HHHHHHHH------
Confidence 367889999999999999999997 66778999999999999999999866 33311000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-----ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCC
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-----ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKT 154 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~ 154 (525)
.. ....+. .++ -.+++..++++||..+..+ ++.++|..+++++.+. .
T Consensus 513 ----------------------~~-~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~-~ 565 (612)
T PRK07789 513 ----------------------LF-YEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC---EREEDVDAVIEKARAI-N 565 (612)
T ss_pred ----------------------Hh-hCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-C
Confidence 00 000010 011 1246678899999998855 8899999999999872 2
Q ss_pred CCCEEEEEEcc
Q 009809 155 TGPVLIHVVTE 165 (525)
Q Consensus 155 ~~P~~i~v~t~ 165 (525)
++|++|+|.+.
T Consensus 566 ~~p~lIev~i~ 576 (612)
T PRK07789 566 DRPVVIDFVVG 576 (612)
T ss_pred CCcEEEEEEEC
Confidence 78999999984
No 136
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.72 E-value=1.9e-08 Score=100.25 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=84.3
Q ss_pred ccccccCCC-CeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 3 VGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 3 ~a~~l~~~~-~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
+|.+..+++ ..|++++|||++.++-+ |+|+.|..+++|+++||+||+.++-..- +.+...+.|....
T Consensus 83 ~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGg-Q~S~~Tp~ga~t~---------- 150 (300)
T PRK11864 83 EALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGI-QRSSSTPYGAWTT---------- 150 (300)
T ss_pred HHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCC-CCCCCCcCCCccc----------
Confidence 444444444 45666999999988875 9999999999999999999986542221 2233333332200
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+.-.|.... ..+...++.++|..|+..++-.|+.++.+++++|.+ .++|.+|+
T Consensus 151 -----------tsp~G~~~~--------------kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~--~~Gps~I~ 203 (300)
T PRK11864 151 -----------TTPGGKREH--------------KKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE--IRGFKFIH 203 (300)
T ss_pred -----------cCCCCCcCC--------------CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000010000 012234578889988888888999999999999998 68999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
+.++=
T Consensus 204 ~~spC 208 (300)
T PRK11864 204 LLAPC 208 (300)
T ss_pred EeCCC
Confidence 98843
No 137
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=98.71 E-value=2.3e-08 Score=110.53 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=87.1
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
.|++.++..++++|+|++|||+|+. ...+|.+|.++++|+++||.||+.+ |.+...
T Consensus 438 aaiGa~la~p~~~Vv~i~GDG~f~m--~~~eL~Tavr~~lpvi~vV~NN~~y--------------g~i~~~-------- 493 (579)
T TIGR03457 438 TIIGAKIAAPDRPVVAYAGDGAWGM--SMNEIMTAVRHDIPVTAVVFRNRQW--------------GAEKKN-------- 493 (579)
T ss_pred HHHhhhhhCCCCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECcch--------------HHHHHH--------
Confidence 3788899999999999999999984 5566999999999999999999876 322110
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcccc-CCccccccccCceEeeccCCCCHHHHHHHHHHhhhc-CCCCC
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMIS-GSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT-KTTGP 157 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~-~~~~P 157 (525)
+.....+.+. .++.. +++..+.++||.++..+ ++.++|..+++++.+. ..++|
T Consensus 494 ---------------------~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~al~~a~~~~~~~~p 549 (579)
T TIGR03457 494 ---------------------QVDFYNNRFVGTELESELSFAGIADAMGAKGVVV---DKPEDVGPALKKAIAAQAEGKT 549 (579)
T ss_pred ---------------------HHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhCCCCCc
Confidence 0000000011 11222 36778899999988855 8899999999998652 14789
Q ss_pred EEEEEEccCCC
Q 009809 158 VLIHVVTEKGR 168 (525)
Q Consensus 158 ~~i~v~t~kg~ 168 (525)
++|+|.+.+..
T Consensus 550 ~lieV~v~~~~ 560 (579)
T TIGR03457 550 TVIEIVCTREL 560 (579)
T ss_pred EEEEEEeCCCc
Confidence 99999996544
No 138
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=98.71 E-value=1.8e-08 Score=111.14 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=86.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.+..+..
T Consensus 430 AiGa~la~p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~y--------------g~i~~~q~~~----- 488 (572)
T PRK06456 430 AMGAKLARPDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTL--------------GLVRQVQDLF----- 488 (572)
T ss_pred HHHHHHhCCCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCch--------------HHHHHHHHHh-----
Confidence 67889999999999999999998 55577999999999999999999866 3221100000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHH-Hhccc-cCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEY-ARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
..+.+ ..++. .+++..+.++||.++..+ ++.++|.++++++.+ .++|++
T Consensus 489 ------------------------~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~l 539 (572)
T PRK06456 489 ------------------------FGKRIVGVDYGPSPDFVKLAEAFGALGFNV---TTYEDIEKSLKSAIK--EDIPAV 539 (572)
T ss_pred ------------------------hCCCcccccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHHHHHh--CCCCEE
Confidence 00001 11221 256678899999988755 889999999999987 689999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+.+
T Consensus 540 Iev~v~~ 546 (572)
T PRK06456 540 IRVPVDK 546 (572)
T ss_pred EEEEeCc
Confidence 9999853
No 139
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.70 E-value=1.6e-08 Score=111.48 Aligned_cols=115 Identities=27% Similarity=0.322 Sum_probs=83.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+.. ..+|.+|.++++|+++||.||+.+ |.+.....
T Consensus 428 aiGa~la~~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~--------------g~~~~~q~------- 484 (564)
T PRK08155 428 AIGAALANPERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEAL--------------GLVHQQQS------- 484 (564)
T ss_pred HHHHHHhCCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcc--------------cccHHHHH-------
Confidence 6778889999999999999999964 444999999999999999999865 22211000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.....+.+..++ ..+++..++++||.++..+ .+.++|.++++++.+ .++|++|
T Consensus 485 ---------------------~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 538 (564)
T PRK08155 485 ---------------------LFYGQRVFAATYPGKINFMQIAAGFGLETCDL---NNEADPQAALQEAIN--RPGPALI 538 (564)
T ss_pred ---------------------HhcCCCeeeccCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 000000000111 1245667899999998855 679999999999987 6899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
+|.+.
T Consensus 539 eV~~~ 543 (564)
T PRK08155 539 HVRID 543 (564)
T ss_pred EEEeC
Confidence 99984
No 140
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.70 E-value=2.5e-08 Score=110.36 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=85.7
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
.|++.++..+++.|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+...........
T Consensus 427 aAiGa~la~p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~--------------g~i~~~~~~~~~~~ 490 (591)
T PRK11269 427 AALGVRAADPDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYL--------------GLIRQAQRAFDMDY 490 (591)
T ss_pred hHHhhhhhCCCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCch--------------hHHHHHHHHhccCc
Confidence 378889999999999999999998 55667999999999999999999865 33311100000000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPV 158 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~ 158 (525)
.. +...... ..-..+...+++..+.++||.++..+ ++.++|..|++++.+. ..++|+
T Consensus 491 ~~--------------~~~~~~~----~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~~~~~~~gp~ 549 (591)
T PRK11269 491 CV--------------QLAFENI----NSPELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPALEQAKALMAEFRVPV 549 (591)
T ss_pred cc--------------eeecccc----ccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhcccCCCcE
Confidence 00 0000000 00000001256678899999998865 8999999999998741 157899
Q ss_pred EEEEEcc
Q 009809 159 LIHVVTE 165 (525)
Q Consensus 159 ~i~v~t~ 165 (525)
+|+|.+.
T Consensus 550 lieV~v~ 556 (591)
T PRK11269 550 VVEVILE 556 (591)
T ss_pred EEEEEec
Confidence 9999985
No 141
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=98.68 E-value=3.4e-08 Score=108.81 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=83.6
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
.|++.++..++++|+|++|||+|+ +...+|.+|.++++|+++||.||+.+ +.+.+..+
T Consensus 426 aaiGa~lA~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y--------------~~i~~~q~------ 483 (566)
T PRK07282 426 AAIGAKIANPDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSL--------------GMVRQWQE------ 483 (566)
T ss_pred HhheeheecCCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCc--------------hHHHHHHH------
Confidence 378899999999999999999998 66677999999999999999999866 22211000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
.....+.....+ ..+++..+.++||.++..+ ++.++|.++++.+ . .++|++
T Consensus 484 ----------------------~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~~-~--~~~p~l 535 (566)
T PRK07282 484 ----------------------SFYEGRTSESVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQDLEVI-T--EDVPML 535 (566)
T ss_pred ----------------------HHhCCCcccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHh-c--CCCCEE
Confidence 000000000111 1346678899999998855 7889999999754 3 589999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.+.+
T Consensus 536 IeV~v~~ 542 (566)
T PRK07282 536 IEVDISR 542 (566)
T ss_pred EEEEeCC
Confidence 9998853
No 142
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=98.66 E-value=9.6e-09 Score=112.51 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=82.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ |...+|.+|.++++|+++||.||+.+. .+.. ....
T Consensus 413 aiGa~la~p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~--------------~i~~-~~~~----- 470 (539)
T TIGR03393 413 AFGAQTACPNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYT--------------VERA-IHGA----- 470 (539)
T ss_pred HHHHHhcCCCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceE--------------EEEe-ecCC-----
Confidence 67889999999999999999997 667889999999999999999998652 1100 0000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCce----EeeccCCCCHHHHHHHHHHhhhcCCCCC
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY----YIGPVDGHNVDDLVAILEEVKNTKTTGP 157 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~dG~d~~~l~~al~~a~~~~~~~P 157 (525)
+ ..+ .++-.+++..+.++||.. +..+ ++.++|.++++++.+ .++|
T Consensus 471 ---------------~----------~~~-~~~~~~df~~la~a~G~~~~~~~~~v---~~~~el~~al~~a~~--~~~p 519 (539)
T TIGR03393 471 ---------------E----------QRY-NDIALWNWTHLPQALSLDPQSECWRV---SEAEQLADVLEKVAA--HERL 519 (539)
T ss_pred ---------------C----------CCc-CcCCCCCHHHHHHHcCCCCccceEEe---ccHHHHHHHHHHHhc--cCCe
Confidence 0 000 011124556678888874 4534 789999999999988 7899
Q ss_pred EEEEEEcc
Q 009809 158 VLIHVVTE 165 (525)
Q Consensus 158 ~~i~v~t~ 165 (525)
++|+|.+.
T Consensus 520 ~liev~i~ 527 (539)
T TIGR03393 520 SLIEVVLP 527 (539)
T ss_pred EEEEEEcC
Confidence 99999884
No 143
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.66 E-value=3.5e-08 Score=97.81 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=84.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++.++++.|||++|||++. .+-...|.+|++.++|+++||.||+.+..... ..+.....|..
T Consensus 69 AiGaklA~pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~-Q~s~~t~~g~~------------ 134 (280)
T PRK11869 69 ATAVKATNPELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKG-QASPTTLKGFK------------ 134 (280)
T ss_pred HHHHHHHCCCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcc-eecCCCCCCcc------------
Confidence 67789999999999999999975 22256699999999999999999985421000 00000000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.+...+......+++..+++++|..++....-.+++++.+++++|.+ .++|++|+
T Consensus 135 -----------------------~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~--~~Gp~lIe 189 (280)
T PRK11869 135 -----------------------TPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK--HKGLAIVD 189 (280)
T ss_pred -----------------------cccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000000001235567799999998865445799999999999998 78999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.++
T Consensus 190 V~~p 193 (280)
T PRK11869 190 IFQP 193 (280)
T ss_pred EECC
Confidence 9885
No 144
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=98.65 E-value=4e-08 Score=108.73 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=84.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|||++|||+|+ +...+|.+|.++++|+++||.||+.+ |.+.+.....
T Consensus 428 aiGa~la~p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~--------------g~~~~~~~~~----- 486 (586)
T PRK06276 428 AIGAKVAKPDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTL--------------GMVYQWQNLY----- 486 (586)
T ss_pred HHhhhhhcCCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------HHHHHHHHHH-----
Confidence 67888999999999999999998 55567999999999999999999865 2221100000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+. .++ ..+++.+++++||.++..+ ++.++|..+++++.+ .++|++
T Consensus 487 ------------------------~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 537 (586)
T PRK06276 487 ------------------------YGKRQSEVHLGETPDFVKLAESYGVKADRV---EKPDEIKEALKEAIK--SGEPYL 537 (586)
T ss_pred ------------------------hCCCcccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 000010 111 1245677899999998855 889999999999987 689999
Q ss_pred EEEEcc
Q 009809 160 IHVVTE 165 (525)
Q Consensus 160 i~v~t~ 165 (525)
|+|.+.
T Consensus 538 IeV~i~ 543 (586)
T PRK06276 538 LDIIID 543 (586)
T ss_pred EEEEec
Confidence 999984
No 145
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.64 E-value=2.6e-08 Score=109.86 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=82.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++. ++++|+|++|||+|+.. ..+|.+|.++++|+++||.||+.+.. .+.+ ..
T Consensus 434 aiGaala-~~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~-----------~~~~----~~------ 489 (568)
T PRK07449 434 AAGVARA-SAKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGI-----------FSLL----PQ------ 489 (568)
T ss_pred HHHHHhc-CCCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCcc-----------ccCC----CC------
Confidence 6777888 79999999999999854 46699999999999999999986510 0000 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.++.... +.+......+++..+.++||+.+..+ ++.++|..+++++.+ .++|++|+
T Consensus 490 ------------------~~~~~~~-~~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al~~a~~--~~~p~lIe 545 (568)
T PRK07449 490 ------------------PEEEPVF-ERFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEALADALP--TPGLTVIE 545 (568)
T ss_pred ------------------CCCcchh-hHhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHHHHHhc--CCCCEEEE
Confidence 0000000 01111112356678899999988754 789999999999987 68999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.+.
T Consensus 546 v~id 549 (568)
T PRK07449 546 VKTN 549 (568)
T ss_pred EeCC
Confidence 9884
No 146
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.63 E-value=2e-08 Score=99.67 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=79.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..+++.|||++|||++.. +.-..+-+|++.++|+++||.||+.+.... .+.......|..
T Consensus 77 AiGaklA~Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~-~Q~~~~t~~g~~------------ 142 (277)
T PRK09628 77 ATGIKLANPDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTN-SQTSPTTPKGMW------------ 142 (277)
T ss_pred HHHHHHHCCCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcce-ecccCCCCCCce------------
Confidence 678899999999999999999853 223346668999999999999998552100 000000000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
... ..+.......++..+++++|..++....=.+.++|.+++++|.+ .++|++|+
T Consensus 143 ---------~~~--------------~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~--~~Gp~lIe 197 (277)
T PRK09628 143 ---------TVT--------------AQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS--HKGFSFFD 197 (277)
T ss_pred ---------eee--------------ccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 00000000123456789999987421122789999999999998 78999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.+.
T Consensus 198 V~~~ 201 (277)
T PRK09628 198 VFSN 201 (277)
T ss_pred EcCC
Confidence 9874
No 147
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.61 E-value=3.3e-08 Score=99.23 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=82.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.+++++++.|||+.|||++. ++....|.+|++.++|+++||.||+.+.....+.. .....|.. .
T Consensus 79 AiGaklA~pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s-~t~~~g~~--------~--- 145 (301)
T PRK05778 79 ATGAKLANPDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQAS-PTTPEGSK--------T--- 145 (301)
T ss_pred HHHHHHHCCCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhcccCccc-CCcCCCcc--------c---
Confidence 67889999999999999999972 34455699999999999999999986521110000 00000000 0
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+...+......+++..+++++|..++....-.+.++|.+++++|.+ .++|++|+
T Consensus 146 ------------------------~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~--~~GpalIe 199 (301)
T PRK05778 146 ------------------------KTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS--HKGFAFID 199 (301)
T ss_pred ------------------------ccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0000000001235566789999987633334789999999999987 78999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.+.
T Consensus 200 V~~~ 203 (301)
T PRK05778 200 VLSP 203 (301)
T ss_pred EcCC
Confidence 8763
No 148
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.59 E-value=3.7e-06 Score=93.14 Aligned_cols=205 Identities=18% Similarity=0.215 Sum_probs=128.4
Q ss_pred CeeeccchHHHHHHHHHHHhcCCC--eEEEee-chhhH---HHHHHHHHHHhh---cCCCCeEEEEcCCCCCCCCCCCCc
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEGL--KPFCAI-YSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHC 314 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G~--~pi~~t-~~~F~---~~a~dqi~~~~~---~~~~pvvi~~~~~G~~g~~G~tH~ 314 (525)
.++|.+++|.++++.=-|.+..-- ..+++. |.+|. +..+||.+..-- .....++....+ |+ -..||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPH-gy-EGQGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPH-GY-EGQGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccC-CC-CCCCCcCc
Confidence 366999999999999999999753 344554 77885 677888544321 123455665565 32 34589999
Q ss_pred chhhhhhhh--cCCCcEEEccCCHHHHHHHHH-HHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceE-EEee---
Q 009809 315 GSFDVTFMA--CLPNMVVMAPSDEAELFHMVA-TAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIE--- 387 (525)
Q Consensus 315 ~~~d~~~~~--~ipg~~v~~P~~~~e~~~~~~-~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~-~l~~--- 387 (525)
+...-.++. .--||+|..|++|...+-+++ ++.....+|.++..+|......... .....+.-++.+ ++.+
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~--S~~~el~~~~F~~vl~d~~~ 783 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAV--SSLEELTEGTFQPVLEDIDE 783 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccC--Cchhhhchhhhhhhhccccc
Confidence 755443433 345899999999999999886 4444456898887777542110000 000011111111 1111
Q ss_pred -C--CcEEEEEechhHHHHHHHHHHHHhCC-CcEEEEeccccccCcHHHHHHHhccC----CeEEEEcCCC-CCCHH
Q 009809 388 -G--ERVALLGYGTAVQSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGS-IGGFG 455 (525)
Q Consensus 388 -g--~dv~iva~G~~~~~a~~Aa~~L~~~G-i~v~vi~~~~l~P~d~~~i~~~~~~~----~~vvvvE~~~-~gglg 455 (525)
+ -.-+++++|-+.....+.. ++.| .++.++.+..|.|||.+.+.+.+++. .-+..-|+.. .|.|.
T Consensus 784 ~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~ 857 (906)
T COG0567 784 LDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY 857 (906)
T ss_pred cccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence 1 2445777787777665543 3333 48999999999999999998877653 3444455554 67776
No 149
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.57 E-value=9.1e-08 Score=94.93 Aligned_cols=123 Identities=22% Similarity=0.290 Sum_probs=83.7
Q ss_pred cccccccCCCCeEEEEEccc-ccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG-~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++..++..||+++||| ++..| ...|.+|.+.++|+++||.||+.+....-+ .+.....|.. ...
T Consensus 68 A~GaklA~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ-~s~~t~~g~~--------t~~ 136 (279)
T PRK11866 68 ATGVKWANPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTGQ-ASPTTPRGVK--------TKT 136 (279)
T ss_pred HHHHHHHCCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhccc-ccCCCCCCce--------eec
Confidence 67889999999999999999 68755 566999999999999999999754211100 0000000000 000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccc-cCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
. ..| +.. ..++..+++++|..++......+.+++.+++++|.+ .++|.+
T Consensus 137 t-------------~~g---------------~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~--~~Gps~ 186 (279)
T PRK11866 137 T-------------PDG---------------NIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK--HKGFSF 186 (279)
T ss_pred c-------------CCC---------------CCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh--CCCCEE
Confidence 0 000 000 114456789999987766566899999999999998 789999
Q ss_pred EEEEcc
Q 009809 160 IHVVTE 165 (525)
Q Consensus 160 i~v~t~ 165 (525)
|++.++
T Consensus 187 I~v~~p 192 (279)
T PRK11866 187 IDVLSP 192 (279)
T ss_pred EEEeCC
Confidence 999874
No 150
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.57 E-value=7.2e-08 Score=106.73 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=85.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+.+ ..+|.+|.++++|+++||-||+.+ +.+.+..+..
T Consensus 444 aiGa~la~p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y--------------~~~~~~~~~~----- 502 (588)
T PRK07525 444 IIGAKIACPDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQW--------------GAEKKNQVDF----- 502 (588)
T ss_pred HHHHHHhCCCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchh--------------HHHHHHHHHH-----
Confidence 6788999999999999999999865 455999999999999999999865 2221100000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hccc-cCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcC-CCCCE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTK-TTGPV 158 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~-~~~P~ 158 (525)
....+. .++. .+++..+.++||.++..+ .+.++|.++++++.+.. .++|+
T Consensus 503 ------------------------~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~p~ 555 (588)
T PRK07525 503 ------------------------YNNRFVGTELDNNVSYAGIAEAMGAEGVVV---DTQEELGPALKRAIDAQNEGKTT 555 (588)
T ss_pred ------------------------hCCCcccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhcCCCCCcE
Confidence 000000 1111 246677899999988754 68899999999887631 35899
Q ss_pred EEEEEccCCCC
Q 009809 159 LIHVVTEKGRG 169 (525)
Q Consensus 159 ~i~v~t~kg~g 169 (525)
+|+|.+...+|
T Consensus 556 lIev~~~~~~~ 566 (588)
T PRK07525 556 VIEIMCNQELG 566 (588)
T ss_pred EEEEEeccccC
Confidence 99999965443
No 151
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.57 E-value=1.3e-07 Score=104.33 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=83.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++. ++++|+|++|||+|+ |...+|.+|.++++|+++||.||+.+. ...
T Consensus 433 aiGa~la-~~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~-------------~~~------------ 484 (569)
T PRK09259 433 AIAAAVE-TGKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIY-------------RGD------------ 484 (569)
T ss_pred HHHHHhc-CCCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHH-------------HHH------------
Confidence 5667777 589999999999998 556679999999999999999998430 000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHH-Hhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEY-ARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
+......+.+ ..++ -.+++.+++++||+++..+ .+.++|..+++++.+ .++|++
T Consensus 485 -------------------~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 540 (569)
T PRK09259 485 -------------------DVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNV---TTPDELRHALTEAIA--SGKPTL 540 (569)
T ss_pred -------------------HHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 0000000000 0111 1356678899999988855 789999999999987 689999
Q ss_pred EEEEccCCCC
Q 009809 160 IHVVTEKGRG 169 (525)
Q Consensus 160 i~v~t~kg~g 169 (525)
|+|.+.+..+
T Consensus 541 Iev~id~~~~ 550 (569)
T PRK09259 541 INVVIDPAAG 550 (569)
T ss_pred EEEEECCCCC
Confidence 9999965444
No 152
>PLN02573 pyruvate decarboxylase
Probab=98.57 E-value=4.3e-08 Score=108.13 Aligned_cols=111 Identities=14% Similarity=0.235 Sum_probs=80.9
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+|+ |...+|.+|.++++|+++||.||+.+. .+.+ .+
T Consensus 437 aiGa~lA~p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg--------------~~~~----~~---- 492 (578)
T PLN02573 437 TLGYAQAAPDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYT--------------IEVE----IH---- 492 (578)
T ss_pred HHHHHHhCCCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCcee--------------EEEe----ec----
Confidence 67888999999999999999997 666779999999999999999998662 1100 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccC-----ceEeeccCCCCHHHHHHHHHHhhhcCCCC
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG-----LYYIGPVDGHNVDDLVAILEEVKNTKTTG 156 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~dG~d~~~l~~al~~a~~~~~~~ 156 (525)
+ ..+. ....+++..++++|| +++..+ .+.++|.++++++.+...++
T Consensus 493 --------------------~-----~~~~-~~~~~d~~~lA~a~G~~~g~~~~~~V---~~~~eL~~al~~a~~~~~~~ 543 (578)
T PLN02573 493 --------------------D-----GPYN-VIKNWNYTGLVDAIHNGEGKCWTAKV---RTEEELIEAIATATGEKKDC 543 (578)
T ss_pred --------------------c-----cCcc-ccCCCCHHHHHHHhcCcCCceeEEEe---cCHHHHHHHHHHHHhhCCCC
Confidence 0 0000 011234556788875 666645 67999999999997422588
Q ss_pred CEEEEEEcc
Q 009809 157 PVLIHVVTE 165 (525)
Q Consensus 157 P~~i~v~t~ 165 (525)
|++|+|.+.
T Consensus 544 p~lieV~v~ 552 (578)
T PLN02573 544 LCFIEVIVH 552 (578)
T ss_pred cEEEEEEcC
Confidence 999999884
No 153
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.56 E-value=6.5e-08 Score=96.27 Aligned_cols=126 Identities=22% Similarity=0.259 Sum_probs=79.6
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|++.++.++++.|||++|||++. ++....|.+|.+.++|+++||.||+.+....-+ .......|.-. ...+
T Consensus 61 aAiGaklA~Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ-~sp~t~~G~~~------~~~~ 132 (287)
T TIGR02177 61 VATGIKLANPHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQ-ASPTLLKGVKT------KSLP 132 (287)
T ss_pred HHHHHHHHCCCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhhcc-cccCccCCcce------eecc
Confidence 367889999999999999999973 455666999999999999999999754210000 00000000000 0000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|. ...++.+++..+.+++|+...... .+.++|.+++++|.+ .++|++|
T Consensus 133 ---------------~g~------------~~~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~~Al~--~~GpslI 181 (287)
T TIGR02177 133 ---------------YPN------------IQDPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIKEAIN--HKGYALV 181 (287)
T ss_pred ---------------cCc------------cCCCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHHHHHh--CCCCEEE
Confidence 000 000112223345667776555322 789999999999988 7899999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
+|.++
T Consensus 182 eV~~p 186 (287)
T TIGR02177 182 DILQP 186 (287)
T ss_pred EEeCC
Confidence 99874
No 154
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.53 E-value=1e-05 Score=86.13 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=153.2
Q ss_pred HHHHHhcCCCEEEEecCCCCCc-c-----h----------HHHHHhCCCC----eeeccchHHHHHHHHHHHhcC--CCe
Q 009809 211 LIAEAEVDKDVVAIHAAMGGGT-G-----L----------NLFLRRFPTR----CFDVGIAEQHAVTFAAGLACE--GLK 268 (525)
Q Consensus 211 l~~~~~~d~~~v~~~~D~~~s~-~-----l----------~~~~~~~p~r----~~~~gIaE~~~~~~a~G~A~~--G~~ 268 (525)
+.-++++.-.|.+-+.|+..++ . | -++..-.|++ +-|..++|-+.+|.-.|.|+. ...
T Consensus 659 FgsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaL 738 (1017)
T KOG0450|consen 659 FGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNAL 738 (1017)
T ss_pred HHHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCce
Confidence 3456667777888899987442 1 1 0122223443 559999999999999999998 578
Q ss_pred EEEee-chhhH---HHHHHHHHHHhhc----CCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhc-------C--------
Q 009809 269 PFCAI-YSSFM---QRAYDQVVHDVDL----QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC-------L-------- 325 (525)
Q Consensus 269 pi~~t-~~~F~---~~a~dqi~~~~~~----~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~-------i-------- 325 (525)
++++. |++|. +..+||++. .+. .+..+|+..++ |+- ..||-|++..--.++.. +
T Consensus 739 VlWEAQFGDFaNtAQ~IiDQFIs-sGqaKW~rqsGlVllLPH-Gye-G~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~ 815 (1017)
T KOG0450|consen 739 VLWEAQFGDFANTAQCIIDQFIS-SGQAKWVRQSGLVLLLPH-GYE-GMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQ 815 (1017)
T ss_pred EEeehhhccccccchhhHHhHhc-cchhhhhhhcCeEEEccC-CcC-CCCcccccccHHHHHHhccCCCccCCcccHHHH
Confidence 88887 88884 788999654 332 23456666555 543 35888886432222211 1
Q ss_pred -----CCcEEEccCCHHHHHHHHHHHHhc-CCCcEEEEecCCCCC----CcccCCCCCCCccc-----cCceEEEeeCCc
Q 009809 326 -----PNMVVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNGI----GVELPPGNKGIPLE-----VGKGRILIEGER 390 (525)
Q Consensus 326 -----pg~~v~~P~~~~e~~~~~~~a~~~-~~~Pv~i~~~~~~~~----~~~~p~~~~~~~~~-----~g~~~~l~~g~d 390 (525)
-||+|+-+++|...+-.++.-+.+ -.+|.++..+|.... ...+.+..+...++ -|+.-.-.++-+
T Consensus 816 ~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vk 895 (1017)
T KOG0450|consen 816 RQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVK 895 (1017)
T ss_pred HHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhce
Confidence 269999999999999999766433 467999888876421 11111111111110 111111123445
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC---CeEEEEcCCC-CCCHH
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEEGS-IGGFG 455 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~---~~vvvvE~~~-~gglg 455 (525)
-.|+++|-.++...++-+... .--++.+.++-.|.|||.+.+++-++++ .-+..-||+. .|.|.
T Consensus 896 rlv~csGkVyydL~k~Rk~~~-~~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~ 963 (1017)
T KOG0450|consen 896 RLVFCSGKVYYDLTKERKEVG-LEGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWD 963 (1017)
T ss_pred EEEEecceEehhhhHHHHhcC-cccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchh
Confidence 678999998887666544321 1347899999999999999998877655 3455557776 67775
No 155
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.50 E-value=1.8e-07 Score=102.94 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=81.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.+++ ++++|+|++|||+|+ |...+|.+|.++++|+++||.||+.+.. + . +
T Consensus 426 aiGaala-~~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~------~-------~----~------- 478 (554)
T TIGR03254 426 AIAAAVE-TGKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYR------G-------D----D------- 478 (554)
T ss_pred HHHHHhc-CCCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhh------h-------h----h-------
Confidence 5667776 489999999999998 5556699999999999999999985410 0 0 0
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
......+....++ ..+++..+.++||.+...+ ++.++|..+++++.+ .++|++|
T Consensus 479 --------------------~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 533 (554)
T TIGR03254 479 --------------------VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNV---TTPDELKAALNEALA--SGKPTLI 533 (554)
T ss_pred --------------------hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0000000000011 1345667899999988755 889999999999987 6899999
Q ss_pred EEEccCC
Q 009809 161 HVVTEKG 167 (525)
Q Consensus 161 ~v~t~kg 167 (525)
+|.+.+.
T Consensus 534 ev~id~~ 540 (554)
T TIGR03254 534 NAVIDPS 540 (554)
T ss_pred EEEECCC
Confidence 9998543
No 156
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.48 E-value=1.3e-07 Score=92.19 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=78.6
Q ss_pred ccccccc-----CCCCeEEEEEcccccc-cchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhh
Q 009809 2 AVGRDLK-----GRKNNVVAVIGDGAMT-AGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSR 75 (525)
Q Consensus 2 A~a~~l~-----~~~~~v~~~~GDG~~~-eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~ 75 (525)
|++.++. .++++|||+.|||++. .| +.| +.++.+.++|+++||.||+.+.... ..+......+..
T Consensus 73 AiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~-~q~~~~~~~g~~------ 143 (237)
T cd02018 73 GLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTG-GQRSGATPLGAD------ 143 (237)
T ss_pred HHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCC-CCCCCCCcCCCc------
Confidence 5667777 8899999999999874 34 334 6666778999999999998652100 000000000000
Q ss_pred hhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCC
Q 009809 76 LQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTT 155 (525)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~ 155 (525)
. ........+..+++.++++++|..+...+.=.+++++.+|++++.+ +.+
T Consensus 144 ---------------------------~--~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~-~~~ 193 (237)
T cd02018 144 ---------------------------S--KMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS-RTD 193 (237)
T ss_pred ---------------------------c--cccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh-cCC
Confidence 0 0000001122356677899999998752222668999999999974 147
Q ss_pred CCEEEEEEcc
Q 009809 156 GPVLIHVVTE 165 (525)
Q Consensus 156 ~P~~i~v~t~ 165 (525)
+|++|+|.+.
T Consensus 194 GP~lI~v~i~ 203 (237)
T cd02018 194 GPTFIHAYTP 203 (237)
T ss_pred CCEEEEEeCC
Confidence 8999999863
No 157
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.46 E-value=1.2e-07 Score=94.62 Aligned_cols=123 Identities=22% Similarity=0.307 Sum_probs=79.6
Q ss_pred cccccccCCCCeEEEEEcccc-cccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~-~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++.++++.|||++|||+ ++.| ...|.+|.+.++|+++||.||+.+.....+ .+.....|.. ..
T Consensus 78 AiGaklA~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q-~s~tt~~g~~--------~~- 145 (286)
T PRK11867 78 ATGLKLANPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQ-YSPTSPVGFV--------TK- 145 (286)
T ss_pred HHHHHHhCCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCc-cCCCCCCCcc--------cc-
Confidence 678899999999999999996 7644 556999999999999999999754211000 0000000000 00
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccc-cCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
....+ ++. ..+...+..++|..++....-.+.+++.+++++|.+ .++|++
T Consensus 146 ------------~~~~g---------------~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~--~~Gp~l 196 (286)
T PRK11867 146 ------------TTPYG---------------SIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN--HKGFSF 196 (286)
T ss_pred ------------cccCC---------------CCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh--CCCCEE
Confidence 00000 000 122345677888876643344689999999999987 689999
Q ss_pred EEEEcc
Q 009809 160 IHVVTE 165 (525)
Q Consensus 160 i~v~t~ 165 (525)
|+|.+.
T Consensus 197 Iev~~~ 202 (286)
T PRK11867 197 VEILQP 202 (286)
T ss_pred EEEeCC
Confidence 999874
No 158
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.40 E-value=2e-07 Score=103.02 Aligned_cols=119 Identities=23% Similarity=0.334 Sum_probs=82.8
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|++.++..++++|++++|||+|...- ..+|.+|.+.++|+++||.||+.+.....+ .....+ .
T Consensus 411 ~AiGa~~a~p~~~Vv~i~GDG~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~~~~q---~~~~~~-~----------- 474 (595)
T TIGR03336 411 VASGLSKAGEKQRIVAFIGDSTFFHTG-IPGLINAVYNKANITVVILDNRITAMTGHQ---PNPGTG-V----------- 474 (595)
T ss_pred HHhhhhhcCCCCCEEEEeccchhhhcC-HHHHHHHHHcCCCeEEEEEcCcceeccCCC---CCCCCC-C-----------
Confidence 367889999999999999999997321 445999999999999999999854210000 000000 0
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
+ .+...+..+++..+++++|+++..+.+-.+++++..+++++.+ .++|++|
T Consensus 475 --~-------------------------~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~--~~gp~li 525 (595)
T TIGR03336 475 --T-------------------------GMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA--AEGVSVI 525 (595)
T ss_pred --C-------------------------CCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh--cCCCEEE
Confidence 0 0000111234456789999998877677788899999999997 6899999
Q ss_pred EEEc
Q 009809 161 HVVT 164 (525)
Q Consensus 161 ~v~t 164 (525)
++..
T Consensus 526 ~v~~ 529 (595)
T TIGR03336 526 IAKQ 529 (595)
T ss_pred EEcc
Confidence 9855
No 159
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.34 E-value=2e-06 Score=88.08 Aligned_cols=120 Identities=20% Similarity=0.298 Sum_probs=89.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC--
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN-- 79 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~-- 79 (525)
+++.|++.+|+-|++++|||++. |.+..|.++..++..+++++.||..+ |-| ++++..
T Consensus 453 ~lG~K~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~Gy--------------GCI----n~LQm~~G 512 (617)
T COG3962 453 GLGAKAAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGY--------------GCI----NRLQMATG 512 (617)
T ss_pred ccccccCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCc--------------chh----hhhhhhcC
Confidence 57889999999999999999998 89999999999999999999999865 222 111111
Q ss_pred -hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE
Q 009809 80 -RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV 158 (525)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~ 158 (525)
..|+.+.++.+. ...+..-++....++||-+...+ +++++|.+||+.+|+ ..+++
T Consensus 513 g~sf~~~~r~~~~-------------------e~~~~~vDfA~~A~s~Ga~~~kv---~~i~eL~aAL~~Ak~--~~~tt 568 (617)
T COG3962 513 GASFNNLLRDTDH-------------------EEEILQVDFAAHAESYGAKAYKV---GTIEELEAALADAKA--SDRTT 568 (617)
T ss_pred cchhhhhhhhhcc-------------------cCCCCcccHHHHHhhcCceeEec---CCHHHHHHHHHHHHh--CCCCE
Confidence 122222111100 01233446667789999988855 799999999999999 79999
Q ss_pred EEEEEcc
Q 009809 159 LIHVVTE 165 (525)
Q Consensus 159 ~i~v~t~ 165 (525)
+|+++|.
T Consensus 569 vi~I~t~ 575 (617)
T COG3962 569 VIVIDTD 575 (617)
T ss_pred EEEEecC
Confidence 9999983
No 160
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.31 E-value=1.6e-06 Score=86.98 Aligned_cols=118 Identities=26% Similarity=0.370 Sum_probs=69.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccC----CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD----SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQ 77 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~----l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~ 77 (525)
|+++.+++||-+++|++|||+..+|-.--++..-..++ ..++-|+.-|++.+ .+++. .+.+
T Consensus 149 A~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI------~~pTi-l~r~-------- 213 (379)
T PF09364_consen 149 AFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKI------SNPTI-LARM-------- 213 (379)
T ss_dssp HHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSS------SSB-H-HHHS--------
T ss_pred HhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccc------cCCeE-eeec--------
Confidence 56788999999999999999999997777776555554 46999999998652 22211 1111
Q ss_pred cChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHH--------HHHHh
Q 009809 78 SNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA--------ILEEV 149 (525)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~--------al~~a 149 (525)
+-+++ ..+|+.+||..+ .|+|.|+.++.+ +++++
T Consensus 214 ---------------------~~~eL----------------~~lf~G~Gy~p~-~Veg~dp~~~h~~ma~ald~a~~~I 255 (379)
T PF09364_consen 214 ---------------------SDEEL----------------EALFRGYGYEPI-FVEGDDPADMHQAMAAALDWALEEI 255 (379)
T ss_dssp ----------------------HHHH----------------HHHHHHTTEEEE-EEE---HHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CHHHH----------------HHHHHhCCCeEE-EEecCCHHHHHHHHHHHHHHHHHHH
Confidence 01122 235899999988 689999865543 22333
Q ss_pred hhc--------CCCCC--EEEEEEccCCCCchh
Q 009809 150 KNT--------KTTGP--VLIHVVTEKGRGYPY 172 (525)
Q Consensus 150 ~~~--------~~~~P--~~i~v~t~kg~g~~~ 172 (525)
+++ ...+| .+|..+|+||++.+.
T Consensus 256 ~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 256 RAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp HHHHHHHTT--SS----EEEEEEE--TTTTS-S
T ss_pred HHHHHHHHcCCCCCCCCCcEEEEECCcccCCcc
Confidence 321 12234 699999999999764
No 161
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.30 E-value=5.7e-07 Score=98.38 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=77.6
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..+ +++++++|||+|+ |...+|.+|.++++|+++||.||+.+ +.+.+ .
T Consensus 412 aiGa~lA~~-~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y--------------~~~~~-~-------- 465 (535)
T TIGR03394 412 GIGAQCTSG-KRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASW--------------EMLRV-F-------- 465 (535)
T ss_pred HHHHHhCCC-CCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCcc--------------ceeeh-h--------
Confidence 456677754 4568899999997 67777999999999999999999865 11100 0
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+. ...+ .++..+++..+.++||.++..+ +..++|..+++++.+. .++|++|+
T Consensus 466 -------------------~~----~~~~-~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~lIe 517 (535)
T TIGR03394 466 -------------------QP----ESAF-NDLDDWRFADMAAGMGGDGVRV---RTRAELAAALDKAFAT-RGRFQLIE 517 (535)
T ss_pred -------------------cc----CCCc-ccCCCCCHHHHHHHcCCCceEe---CCHHHHHHHHHHHHhc-CCCeEEEE
Confidence 00 0000 0111345567789999987755 7899999999998762 35589999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
|.+.
T Consensus 518 v~i~ 521 (535)
T TIGR03394 518 AMLP 521 (535)
T ss_pred EECC
Confidence 9884
No 162
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.24 E-value=1.4e-06 Score=106.39 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=83.6
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhcccc--CCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL--DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~--~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
|++.++.. +++|+|++|||+|+ +...+|.+|.++ ++|+++||.||+.+ |.+. .+...+.
T Consensus 770 AIGaala~-~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg--------------gi~~-~l~~~~~- 830 (1655)
T PLN02980 770 AIGFAVGC-NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG--------------AIFS-LLPIAKR- 830 (1655)
T ss_pred HHHHhhcC-CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc--------------Hhhh-cCccCCC-
Confidence 55667776 88999999999997 667789999874 89999999999854 1110 0000000
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
..+.. ...+......+++..+.++||+++..+ .+.++|..+++++.+ .++|++
T Consensus 831 -------------------~~~~~---~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL~~aL~~a~~--~~~p~l 883 (1655)
T PLN02980 831 -------------------TEPRV---LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSELEDALFTSQV--EQMDCV 883 (1655)
T ss_pred -------------------Ccchh---HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHHHHHHHHhhc--cCCCEE
Confidence 00000 001111112456778899999999966 789999999999987 689999
Q ss_pred EEEEccCC
Q 009809 160 IHVVTEKG 167 (525)
Q Consensus 160 i~v~t~kg 167 (525)
|+|.|.+-
T Consensus 884 IEV~t~~~ 891 (1655)
T PLN02980 884 VEVESSID 891 (1655)
T ss_pred EEEecChh
Confidence 99999753
No 163
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.12 E-value=8.6e-06 Score=81.44 Aligned_cols=133 Identities=21% Similarity=0.339 Sum_probs=83.5
Q ss_pred cccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHH
Q 009809 6 DLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLREL 85 (525)
Q Consensus 6 ~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~ 85 (525)
+..+++..|||+.|||++-.- -.++|..|...+.|+++||.||..++-+.- +.+...+.|....
T Consensus 86 ~~~~~~~~Vv~~~GDG~~~dI-G~~~L~~a~~r~~ni~~ivlDNe~Y~nTGg-Q~S~~Tp~Ga~t~-------------- 149 (299)
T PRK11865 86 KALGKKVNVVAIGGDGGTADI-GFQSLSGAMERGHNILYLMYDNEAYMNTGI-QRSGSTPFGASTT-------------- 149 (299)
T ss_pred HHhcCCCeEEEEeCCchHhhc-cHHHHHHHHHcCCCeEEEEECCccccCCCC-CCCCCCCCCcccc--------------
Confidence 333567799999999988432 348899999999999999999985542221 1222222222200
Q ss_pred HHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEcc
Q 009809 86 REVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTE 165 (525)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~ 165 (525)
+...|+... .+.....+...++.+.|..|+..++-.++.++.+++++|.+ .++|.+|+++++
T Consensus 150 -------tsp~Gk~~~---------G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~--~~Gps~I~v~sP 211 (299)
T PRK11865 150 -------TSPAGKYSR---------GEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE--VEGPAYIQVLQP 211 (299)
T ss_pred -------cCCCCcccC---------CCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh--CCCCEEEEEECC
Confidence 000000000 00000112234567788888877777899999999999998 689999999884
Q ss_pred --CCCCchh
Q 009809 166 --KGRGYPY 172 (525)
Q Consensus 166 --kg~g~~~ 172 (525)
.++|+..
T Consensus 212 C~~~~~~~~ 220 (299)
T PRK11865 212 CPTGWGFPP 220 (299)
T ss_pred CCCCCCCCH
Confidence 4666543
No 164
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=98.04 E-value=0.00019 Score=65.49 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=82.0
Q ss_pred CCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCC--CCCCcchhhh
Q 009809 242 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGAD--GPTHCGSFDV 319 (525)
Q Consensus 242 p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~--G~tH~~~~d~ 319 (525)
.-+++.+- .|++++.+|.|.++.|.+.++.+..+.+..+...+.+.. ..+.|++++....+..+.. ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a~-~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLAA-GAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHHH-hCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 45788886 999999999999999988667778999988988876544 4679999887554432221 2234434443
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEec
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYP 359 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~ 359 (525)
.+++ |-..++.+.+++|+..++..|+.. ..+|++++.+
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4443 245678899999999999988753 3479988753
No 165
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.00 E-value=9.4e-06 Score=84.73 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=40.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCC
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV 52 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~ 52 (525)
|++..++.++++++.|+|||++| ++-+++.+--+|+++.++++.||+.+
T Consensus 420 alGa~~A~~drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GY 468 (557)
T COG3961 420 ALGAALAAPDRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGY 468 (557)
T ss_pred hhhhhhcCCCccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCc
Confidence 68889999999999999999998 67777999999986655555455544
No 166
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.93 E-value=3.1e-05 Score=79.97 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=75.7
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+|+++..|++.|||+-||++|. -..=.+.++.+++||+++||-||+..+ |-... +
T Consensus 439 alaaa~~~P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV~NN~Giy-------g~d~~---------------~ 494 (571)
T KOG1185|consen 439 ALAAALAAPDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVVGNNNGIY-------GLDDD---------------G 494 (571)
T ss_pred HHHHHhhCCCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEEecCCccc-------ccCcc---------------c
Confidence 67889999999999999999994 555559999999999999888776432 11110 1
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
|..++| ......-+.. ... -+-...++.++||-+...+ ..+++|..+++++.+. +++|++|.
T Consensus 495 ~~~I~e---~~~~~~~p~~-~l~----------~~~rY~~v~ka~G~kG~~v---~t~~el~~~l~~a~q~-~~~psvIN 556 (571)
T KOG1185|consen 495 WKQISE---QDPTLDLPPT-ALL----------ANTRYDKVAKAFGGKGYFV---STVEELLAALQQACQD-TDKPSVIN 556 (571)
T ss_pred HHHHhh---cCcccCCCcc-ccc----------ccccHHHHHHHcCCCceee---CCHHHHHHHHHHHHhc-CCCCeEEE
Confidence 111110 0000000000 000 0001123467788765534 5899999999988763 56999999
Q ss_pred EEcc
Q 009809 162 VVTE 165 (525)
Q Consensus 162 v~t~ 165 (525)
+.--
T Consensus 557 VlI~ 560 (571)
T KOG1185|consen 557 VLIG 560 (571)
T ss_pred EEec
Confidence 8653
No 167
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.79 E-value=0.00036 Score=63.32 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=81.4
Q ss_pred CCeeeccchHHHHHHHHHHHhcCCCe-EEEee-chhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACEGLK-PFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~G~~-pi~~t-~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
-|++.+ ..|.+++.+|.|.++.+.| +++.+ .++.+..++..+. .+...+.|++++....+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~-~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA-NAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH-HHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 356666 7999999999999998554 44443 6888888877754 455679999999866664332223466555556
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcC----CCcEEEEec
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAID----DRPSCFRYP 359 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~----~~Pv~i~~~ 359 (525)
+++.+..+ .+...+++++...+..|+... .+|+++.++
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77776555 677789999999998887642 469998764
No 168
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.72 E-value=0.0001 Score=74.99 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=90.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+++..++|+.+|+-+=||++|. |....|.++...++|+.+++-||.-+ |..-
T Consensus 533 AIGAsVA~P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeq--------------GMVt----------- 585 (675)
T KOG4166|consen 533 AIGASVANPDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQ--------------GMVT----------- 585 (675)
T ss_pred hhcccccCcccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhh--------------hhHH-----------
Confidence 77888999999999999999998 67777999999999999999999754 3331
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.|++...+.++.-.+-..|++-.+.+++|++..++ ..-++|++.++.... +++|++++
T Consensus 586 -----------------QWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV---~K~edL~~k~kefls--TkGPvLle 643 (675)
T KOG4166|consen 586 -----------------QWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV---TKKEDLREKIKEFLS--TKGPVLLE 643 (675)
T ss_pred -----------------HHHHHHHHhhhccccccCccHHHHHHhcCCchhee---ehHHHHHHHHHHHhC--CCCCeEEE
Confidence 13333333333323444677788899999998765 667888999998888 89999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
|...+
T Consensus 644 V~v~~ 648 (675)
T KOG4166|consen 644 VIVPH 648 (675)
T ss_pred EEccC
Confidence 98754
No 169
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.46 E-value=0.00013 Score=76.10 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=40.5
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCC
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV 52 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~ 52 (525)
+++...+.++++|+.|+|||+++ +..+.+.++.+|++|.++++.||+.+
T Consensus 424 ~lG~a~a~~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GY 472 (561)
T KOG1184|consen 424 TLGYAQAAPEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGY 472 (561)
T ss_pred hhhhhhccCCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCce
Confidence 56777888999999999999999 45555999999998877777777765
No 170
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=97.15 E-value=0.0036 Score=57.96 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCeeeccchHHHHHHHHHHHhcCCCeE-EEee-chhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCC-CCCCCCcchhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACEGLKP-FCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGSFDV 319 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~G~~p-i~~t-~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g-~~G~tH~~~~d~ 319 (525)
=|++.+ ..|.++..+|.|.+..+.+| ++.+ .++.+..+...+.+ +...+.|++++....+... ..+..|+..+..
T Consensus 40 i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~-A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~ 117 (172)
T PF02776_consen 40 IRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN-AYADRIPVLVITGQRPSAGEGRGAFQQEIDQQ 117 (172)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH-HHHTT-EEEEEEEESSGGGTTTTSTTSSTHHH
T ss_pred eeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh-cccceeeEEEEecccchhhhcccccccchhhc
Confidence 467775 99999999999999875544 4444 56666666555433 4557999999886655422 245666566666
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHh----cCCCcEEEEecCC
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 361 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~----~~~~Pv~i~~~~~ 361 (525)
.+++.+-.+ .+.+.++.++...++.|+. ...+|++|.++..
T Consensus 118 ~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 118 SLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp HHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred chhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 777876644 5666677776666666654 3478999988764
No 171
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.13 E-value=0.0017 Score=65.11 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=81.8
Q ss_pred cccccccCCCCeEEEEEccc-ccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG-~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|.+.+++.++..||++-||| ++..| ...|-.+.+.+.++++||.||..++.+.-+ .+.+.+.|......
T Consensus 79 atGik~A~~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTggQ-~S~tTp~G~~t~t~------- 148 (294)
T COG1013 79 ATGIKLANPALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGGQ-ASPTTPKGAKTKTT------- 148 (294)
T ss_pred HHHHHHhccCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCCCc-cCCCCCCCceeeec-------
Confidence 45678888999999999999 56555 555778888899999999999866544433 33333334321000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
-.|+... + ..+...++-++|..|+...-=-++.++.+.+++|.+ ..+|.+|
T Consensus 149 --------------p~Gk~~~---~----------k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~--~~Gps~I 199 (294)
T COG1013 149 --------------PYGKRSE---K----------KKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE--HKGPSFI 199 (294)
T ss_pred --------------CCCCCcC---C----------CCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh--ccCCeEE
Confidence 0011000 0 001234566788888765544568888888888877 5799999
Q ss_pred EEEcc
Q 009809 161 HVVTE 165 (525)
Q Consensus 161 ~v~t~ 165 (525)
++.++
T Consensus 200 ~v~sP 204 (294)
T COG1013 200 DVLSP 204 (294)
T ss_pred EEecC
Confidence 99884
No 172
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.91 E-value=0.0083 Score=62.19 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=81.3
Q ss_pred hCCC-CeeeccchHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHH--hhcCCCCeEEEEcCCCCCC-CCCCCCc
Q 009809 240 RFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHD--VDLQKLPVRFAMDRAGLVG-ADGPTHC 314 (525)
Q Consensus 240 ~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~--~~~~~~pvvi~~~~~G~~g-~~G~tH~ 314 (525)
..|+ +++-+ -+|..++++|+|+.++ |.+|++.+-.+.+..+...+... ....++|++++..++|-.| .+-|+|.
T Consensus 23 ~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~ 101 (361)
T TIGR03297 23 NNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHV 101 (361)
T ss_pred cCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhh
Confidence 4433 56655 6799999999999999 99999999877777777765443 2346899999999988644 4457774
Q ss_pred chhh--hhhhhcCCCcEEE-ccCCHHHHHHHHHHHHh---cCCCcEEEEecCCC
Q 009809 315 GSFD--VTFMACLPNMVVM-APSDEAELFHMVATAAA---IDDRPSCFRYPRGN 362 (525)
Q Consensus 315 ~~~d--~~~~~~ipg~~v~-~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~~ 362 (525)
.... ..++.. -++..+ .|.+..|....+..+++ ..++|+.+.+.+..
T Consensus 102 ~~G~~t~~lL~~-~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~ 154 (361)
T TIGR03297 102 KQGRITLSLLDA-LEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGT 154 (361)
T ss_pred HHhHHHHHHHHH-cCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcccc
Confidence 3222 233432 133223 34666666666655543 35789998887764
No 173
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.81 E-value=0.058 Score=49.17 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhh-cCCCCeEEEEcCCCCCCCCCCCCcchh--hhhhhhcC
Q 009809 249 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD-LQKLPVRFAMDRAGLVGADGPTHCGSF--DVTFMACL 325 (525)
Q Consensus 249 gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~-~~~~pvvi~~~~~G~~g~~G~tH~~~~--d~~~~~~i 325 (525)
...|..++++|+|..+.|.+|.+++-.+....+...+. .+. ..+.||+++....|-.+..-+.|.... ....+..
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~-~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~- 117 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALA-SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDT- 117 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHH-HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHH-
Confidence 57888899999999999999988886655555655543 344 678999999877664222211111110 1111111
Q ss_pred CCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecCC
Q 009809 326 PNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 361 (525)
Q Consensus 326 pg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~ 361 (525)
-++......+++++ ..+..|+. ..++|+++.+.+.
T Consensus 118 ~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 118 LGIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred cCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 12235555667787 77777754 2458999987664
No 174
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.67 E-value=0.011 Score=63.86 Aligned_cols=109 Identities=25% Similarity=0.377 Sum_probs=73.2
Q ss_pred CCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHHh
Q 009809 11 KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 90 (525)
Q Consensus 11 ~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 90 (525)
.+++++++|||.|... -..+|..|...+.|++++|-||+... ..|..+..|.- ++.
T Consensus 445 ~k~~va~iGDsTF~Hs-Gi~~l~nAV~n~~~~~~vvLdN~~tA-----MTGgQp~pg~~------------~~~------ 500 (640)
T COG4231 445 TKKIVAVIGDSTFFHS-GILALINAVYNKANILVVVLDNRTTA-----MTGGQPHPGTG------------VAA------ 500 (640)
T ss_pred CCceEEEecccccccc-CcHHHHHHHhcCCCeEEEEEeccchh-----ccCCCCCCCcc------------ccc------
Confidence 4899999999999865 34458889999999999999997321 11211221110 000
Q ss_pred hhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEc
Q 009809 91 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 164 (525)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t 164 (525)
.-++...... ..+.+++|..++.++|=+|++++.++++++++ .++|.+|..+.
T Consensus 501 ~g~~~~~i~i-------------------ee~~r~~Gv~~v~~vdp~~~~~~~~~~keale--~~gpsViiak~ 553 (640)
T COG4231 501 EGTKSTAIVI-------------------EEVVRAMGVEDVETVDPYDVKELSEAIKEALE--VPGPSVIIAKR 553 (640)
T ss_pred CCCccceeEh-------------------hHhhhhcCceeeeccCCcchHHHHHHHHHHhc--CCCceEEEEcC
Confidence 0000000011 23467889988888888999999999999999 78899888754
No 175
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.38 E-value=0.13 Score=47.26 Aligned_cols=115 Identities=11% Similarity=0.008 Sum_probs=77.3
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
+++.+ -.|+++..+|.|.|.. |...++. +.++.+..++--+. .+...+.||+++.............+|......+
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~-~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLY-DAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 45544 8999999999999996 5444433 37888776665543 4556789999987443321111234676666677
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~ 361 (525)
++.+-.+ ...+.++.++...+..|+.. ..+||||-++..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 7776655 56677888888777777642 458999977653
No 176
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.16 E-value=0.012 Score=60.33 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=72.4
Q ss_pred CeEEEEEccccc-ccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHHh
Q 009809 12 NNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 90 (525)
Q Consensus 12 ~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 90 (525)
..||++-|||.. .-| ...|..+...+.|+++||.||..++.+.-+ .+.+.+.|.....
T Consensus 152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ-~S~tTp~Ga~t~t------------------ 210 (365)
T cd03377 152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQ-ASKATPLGAVAKF------------------ 210 (365)
T ss_pred cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCc-CCCCCCCcCcCcc------------------
Confidence 589999999944 544 455766777788899999999866533222 2233333433100
Q ss_pred hhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccC-CCCHHHHHHHHHHhhhcCCCCCEEEEEEcc
Q 009809 91 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTE 165 (525)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d-G~d~~~l~~al~~a~~~~~~~P~~i~v~t~ 165 (525)
.-.|+... ..+...++.++|..|+..+- |.++.++.+++++|.+ .++|.+|++.++
T Consensus 211 ---sp~Gk~~~--------------kkd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 211 ---AAAGKRTG--------------KKDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred ---CCCCCCCC--------------CcCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 00000000 01112345677887876553 4699999999999998 699999999885
No 177
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=95.97 E-value=0.016 Score=57.68 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=80.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++-+.+.|++.++++.||-.|+ ...|.|...+++|+|.+-|+.||.+. |-+.++...+..+--
T Consensus 428 algv~~adp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnayl--------------glirqaqr~f~mdy~ 491 (592)
T COG3960 428 ALGVCAADPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYL--------------GLIRQAQRAFDMDYC 491 (592)
T ss_pred hhceeecCCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHH--------------HHHHHHHhcCCccce
Confidence 56777888999999999999998 78899999999999999999888764 434332222221110
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~ 159 (525)
... +-+++- . .....| .-+.....+++|.+.+++ .++.++..|+++++.. +..-|++
T Consensus 492 v~l---af~nin-~---------~~~~gy-----gvdhv~v~eglgckairv---~~p~e~a~af~~a~~lm~eh~vpvv 550 (592)
T COG3960 492 VQL---AFENIN-S---------SEVNGY-----GVDHVKVAEGLGCKAIRV---FKPEDIAPAFEQAKALMAQHRVPVV 550 (592)
T ss_pred eee---hhhccC-C---------cccccc-----CccceeehhccCceeEEe---cChHHhhHHHHHHHHHHHhcCCCee
Confidence 000 000000 0 000001 123345678888888766 6778888888888652 3566998
Q ss_pred EEEEc
Q 009809 160 IHVVT 164 (525)
Q Consensus 160 i~v~t 164 (525)
+++.-
T Consensus 551 ve~il 555 (592)
T COG3960 551 VEVIL 555 (592)
T ss_pred eehHH
Confidence 88743
No 178
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.84 E-value=0.19 Score=46.02 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=70.1
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
+++.+ -.|+++..+|.|.+.. |...++. +.++.+..++--+ ..+...+.||+++............++|..+...+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 55555 8999999999999996 5444433 3788876666554 34556789999987543322222334676666667
Q ss_pred hhcCCCcEEEccCCHHH------HHHHHHHHHhc----CCCcEEEEec
Q 009809 322 MACLPNMVVMAPSDEAE------LFHMVATAAAI----DDRPSCFRYP 359 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e------~~~~~~~a~~~----~~~Pv~i~~~ 359 (525)
++.+-.+ .....++.+ +..++..|+.. ..+|+++-++
T Consensus 115 ~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7654443 334444444 45555555432 3479988553
No 179
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=95.55 E-value=0.024 Score=49.52 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=74.3
Q ss_pred eeecc-chHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcc----hhhh
Q 009809 245 CFDVG-IAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG----SFDV 319 (525)
Q Consensus 245 ~~~~g-IaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~----~~d~ 319 (525)
+.+.+ -.|...+|+|+|+.++|.+|..-+-.+.+......+...-...++|..++..++|...++-+.+-. ..+
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~k- 121 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPK- 121 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHH-
Confidence 33443 368889999999999999999988777764443333222234689999999999975443333221 222
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecC
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 360 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~ 360 (525)
+++ .-++-.+.|-.|+|+..++..+.. ....|+.+.++-
T Consensus 122 -iLe-~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 122 -ILE-GLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred -HHh-hcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 222 134557899999998887766532 356788876654
No 180
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=95.49 E-value=0.23 Score=46.57 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhC--CCcEEEEecccc--------cc--CcHHHHHHHhccCCeEEEEcCCCCCCH
Q 009809 388 GERVALLGYGTAV-QSCLAASALLESN--GLRLTVADARFC--------KP--LDHALIRSLAKSHEVLITVEEGSIGGF 454 (525)
Q Consensus 388 g~dv~iva~G~~~-~~a~~Aa~~L~~~--Gi~v~vi~~~~l--------~P--~d~~~i~~~~~~~~~vvvvE~~~~ggl 454 (525)
.+||++.+.|... .+++.|++.|++. ++++++|++.-| .| ++.+.+.++....++||+. .-|+
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa----fHGY 109 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA----FHGY 109 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE----ESSE
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE----cCCC
Confidence 4799999999874 8999999999988 999999997443 23 5678888888888888853 3567
Q ss_pred HHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 455 GSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 455 g~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
...|...+-.+. ...++...|..+. |..-|+-+++-..++|--.++..+.+.+
T Consensus 110 p~~i~~L~~~R~---n~~~~hV~GY~Ee-GttTTPFDM~vlN~~dRfhLa~dai~~~ 162 (203)
T PF09363_consen 110 PWLIHRLLFGRP---NHDRFHVHGYREE-GTTTTPFDMRVLNGMDRFHLAKDAIRRV 162 (203)
T ss_dssp HHHHHHHTTTST---TGGGEEEEEE-S----SS-HHHHHHCTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC---CCCCeEEEeeccC-CCcCchHHHHHHhCCCHHHHHHHHHHHh
Confidence 777766654432 1356777786543 4445677888888999877776665544
No 181
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.43 E-value=0.19 Score=45.68 Aligned_cols=140 Identities=12% Similarity=0.092 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcchHHH-HHhCCCCeeeccchHHHHHH----HHHHHhcCCCeEEEeec--hhhH
Q 009809 206 YFAEALIAEAEVDKDVVAIHAAMGGGTGLNLF-LRRFPTRCFDVGIAEQHAVT----FAAGLACEGLKPFCAIY--SSFM 278 (525)
Q Consensus 206 a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~-~~~~p~r~~~~gIaE~~~~~----~a~G~A~~G~~pi~~t~--~~F~ 278 (525)
.+.+.|.+.+ . +.+++ .|.|.. ....+ ....|.+|+. .+.+| .|.|++++-.++++++. +.|+
T Consensus 3 ~~~~~l~~~l-~-d~~vv--~d~G~~-~~~~~~~~~~~~~~~~-----~gsmG~~lp~AiGa~~a~~~~Vv~i~GDG~f~ 72 (157)
T cd02001 3 AAIAEIIEAS-G-DTPIV--STTGYA-SRELYDVQDRDGHFYM-----LGSMGLAGSIGLGLALGLSRKVIVVDGDGSLL 72 (157)
T ss_pred HHHHHHHHhC-C-CCEEE--eCCCHh-HHHHHHhhcCCCCEEe-----ecchhhHHHHHHHHHhcCCCcEEEEECchHHH
Confidence 3445666666 2 33443 344432 22223 2356788875 44554 57777765447777775 4554
Q ss_pred HHHHHHHHHHhhcC-CCCeEEEE-cCCCCCCC-CCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEE
Q 009809 279 QRAYDQVVHDVDLQ-KLPVRFAM-DRAGLVGA-DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSC 355 (525)
Q Consensus 279 ~~a~dqi~~~~~~~-~~pvvi~~-~~~G~~g~-~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~ 355 (525)
+-.-+ +..+... ++|++++. .+.++... .-.++...-|+.-+..--|+..+...++.|+...+++++. .++|.+
T Consensus 73 m~~~e--l~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~v 149 (157)
T cd02001 73 MNPGV--LLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTL 149 (157)
T ss_pred hcccH--HHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEE
Confidence 33333 2334444 58987766 55553111 1122222223322222235556677899999999999976 578987
Q ss_pred EEe
Q 009809 356 FRY 358 (525)
Q Consensus 356 i~~ 358 (525)
+-.
T Consensus 150 i~v 152 (157)
T cd02001 150 LHA 152 (157)
T ss_pred EEE
Confidence 643
No 182
>PRK12474 hypothetical protein; Provisional
Probab=95.36 E-value=2.6 Score=46.14 Aligned_cols=116 Identities=11% Similarity=-0.021 Sum_probs=77.7
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEE-EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ -.|+++..+|-|.|.. |.-.+ +.|+++....++--+. .+-.-+.||+++.............||......+
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~-~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLH-NARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHH-HHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 67777 8999999999999985 65554 3458888776655433 3445789999886433221111123455545567
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 362 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~~ 362 (525)
++.+-.+ .+...++.++..+++.|+.. ..+||+|-+++..
T Consensus 123 ~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 123 ARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred hhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 7765443 45678889888888888742 2479999888753
No 183
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.20 E-value=0.41 Score=52.84 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=77.7
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ -.|.+++.+|.|.|.. |...++. |+++.+..++.-+ ..+-..++||+++.............+|..+...+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 67776 8999999999999985 6444444 4888887776554 34556899999987543321111234565555567
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+-.+ .....++.++...+..|+.. ..+||||-++..
T Consensus 119 ~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 119 TMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 7765544 34456788888888877653 257999988865
No 184
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=95.19 E-value=0.32 Score=53.91 Aligned_cols=149 Identities=15% Similarity=0.083 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 281 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a 281 (525)
..+.|.+.+++..-=.+++- .|+..+ +.+. +.+=+++.+ ..|.+++.+|.|.|.. |...++. |+++.+..+
T Consensus 18 ~~~~i~~~L~~~Gv~~vFg~--pG~~~~~l~~al~-~~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~ 93 (571)
T PRK07710 18 GAQMLIEALEKEGVEVIFGY--PGGAVLPLYDALY-DCGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNV 93 (571)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCcchHHHHHHHH-hcCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 35666666665532122221 123222 3332 234578876 9999999999999986 5444433 478887666
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 357 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~ 357 (525)
+--+ ..+-..+.||+++..........-..+|..+...+++.+-.+ .+...++.++..++..|+.. ..+|||+-
T Consensus 94 ~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 171 (571)
T PRK07710 94 VTGL-ADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLID 171 (571)
T ss_pred HHHH-HHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 6554 345567899998865433211111234555555677765444 44566777777777777653 24899998
Q ss_pred ecCC
Q 009809 358 YPRG 361 (525)
Q Consensus 358 ~~~~ 361 (525)
++..
T Consensus 172 iP~D 175 (571)
T PRK07710 172 IPKD 175 (571)
T ss_pred cChh
Confidence 8864
No 185
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.16 E-value=0.43 Score=52.92 Aligned_cols=149 Identities=14% Similarity=0.058 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEee-chhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t-~~~F~~~a~ 282 (525)
++.|.+.+++..-=.+++ +.|+..+ +.+.+.-.=|++.+ -.|+++..+|.|.|.. |...++.+ +++++..++
T Consensus 7 a~~l~~~L~~~Gv~~vFg--vpG~~~~~l~d~l~~~~~i~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l 83 (574)
T PRK07979 7 AEMVVRSLIDQGVKQVFG--YPGGAVLDIYDALHTVGGIDHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAI 83 (574)
T ss_pred HHHHHHHHHHcCCCEEEE--ccCcchHHHHHHHHhcCCceEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhH
Confidence 456666665553222333 2233332 23322111256665 8999999999999985 76666554 888887776
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
--+ ..+-..+.||+++.............+|..+...+++.+-.+ .+...+++++...+..|+.. ..+|+||.+
T Consensus 84 ~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~i 161 (574)
T PRK07979 84 TGI-ATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDL 161 (574)
T ss_pred HHH-HHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEc
Confidence 554 334557899999875444311111235555555667765443 44556888888888888652 357999988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
+..
T Consensus 162 P~D 164 (574)
T PRK07979 162 PKD 164 (574)
T ss_pred Chh
Confidence 875
No 186
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=95.12 E-value=0.43 Score=52.81 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCC-CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 281 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p-~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a 281 (525)
.+.|.+.+++..-=.+++ +.|...+ +.+.+ .+ =|++.+ ..|++++.+|.|.|.. |...++. |+++.+..+
T Consensus 13 ~~~i~~~L~~~Gv~~vFg--ipG~~~~~l~dal~~-~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 88 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFG--YPGGAVLPLYDAIYN-FEGIRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNA 88 (566)
T ss_pred HHHHHHHHHHcCCCEEEe--cCCcchHHHHHHHhh-cCCceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 566666666654222333 1123222 33322 23 377777 8999999999999986 6555444 488888777
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 357 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~ 357 (525)
+--+. .+-..+.||+++.............+|..+...+++.+-.+ .....++.++..++..|+.. ..+|||+-
T Consensus 89 ~~gla-~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 166 (566)
T PRK07282 89 ITGIA-DAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKY-NYQIRETADIPRIITEAVHIATTGRPGPVVID 166 (566)
T ss_pred HHHHH-HHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCce-eEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 65543 34557899999875544311111235555555666665544 34556777787777777653 24899998
Q ss_pred ecCC
Q 009809 358 YPRG 361 (525)
Q Consensus 358 ~~~~ 361 (525)
++..
T Consensus 167 iP~D 170 (566)
T PRK07282 167 LPKD 170 (566)
T ss_pred CChh
Confidence 8774
No 187
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.09 E-value=0.52 Score=52.16 Aligned_cols=149 Identities=14% Similarity=0.048 Sum_probs=91.9
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
++.|.+.+++..==.+++ +.|+..+ +.+.+...=+++.+ ..|++++.+|.|.|.. |...++. |+++.+..++
T Consensus 6 ~~~l~~~L~~~Gv~~vFg--ipG~~~~~l~~~l~~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~ 82 (563)
T PRK08527 6 SQMVCEALKEEGVKVVFG--YPGGAILNIYDEIYKQNYFKHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAV 82 (563)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCcchHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHH
Confidence 456666666554223333 2233333 22221111266666 8999999999999985 6555544 4888887776
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
--+ ..+-..+.||+++..........-..+|..+...+++.+-.+ .....++.++...+..|+.. ..+||||-+
T Consensus 83 ~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~i 160 (563)
T PRK08527 83 TGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDI 160 (563)
T ss_pred HHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 554 345567899998875443211111235666555677765433 45668899999988888753 236999988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
+..
T Consensus 161 P~D 163 (563)
T PRK08527 161 PKD 163 (563)
T ss_pred CHh
Confidence 764
No 188
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.03 E-value=0.61 Score=51.81 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=78.5
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
+++.+ -.|++++.+|.|.|.. |.-.++ .++++.+..++--+ ..+...+.||+++....+........||......+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 56666 8999999999999975 655555 44888887766554 34556789999987544432112234676665667
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN 362 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~~ 362 (525)
++.+-.+ .+...++.++...+..|+.. ..+||||-+++..
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 7765443 45566777777777777542 3479999998753
No 189
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.03 E-value=0.46 Score=52.26 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=79.3
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEE-EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ ..|+++..+|.|.|.. |...+ +.|+++.+..++--+ ..+...+.||+++.............||......+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 67777 6999999999999985 65444 445888887776554 34556789999987543321112245887777778
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+-.+ .....++.++...+..|+.. ..+||||.++..
T Consensus 116 ~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 116 FRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 8876543 44557788887777777642 247999988875
No 190
>PRK07064 hypothetical protein; Provisional
Probab=95.01 E-value=0.54 Score=51.72 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRA 281 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a 281 (525)
++.|.+.+++..=-.+++ +.|+..+ +.+.+ .++ |++.+ ..|+++..+|.|.|.. |...++ .|+++....+
T Consensus 6 ~~~l~~~L~~~Gv~~vFg--vpG~~~~~l~~al~~-~~~i~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 6 GELIAAFLEQCGVKTAFG--VISIHNMPILDAIGR-RGKIRFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCCcchHHHHHHhc-cCCccEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 456666666554222333 2233332 33322 222 66666 8999999999999986 654444 4578888777
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCC--CCCC-CCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPS 354 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~--~g~~-G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv 354 (525)
+--+ ..+...+.||+++...... .+.+ +..|+..+...+++.+-.+ .+...++.++...+..|+.. ..+||
T Consensus 82 ~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV 159 (544)
T PRK07064 82 AGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPV 159 (544)
T ss_pred HHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcE
Confidence 6554 3455689999988643322 1222 2345544556677765543 45556788877777777643 36899
Q ss_pred EEEecCC
Q 009809 355 CFRYPRG 361 (525)
Q Consensus 355 ~i~~~~~ 361 (525)
||-++..
T Consensus 160 ~l~iP~d 166 (544)
T PRK07064 160 SVEIPID 166 (544)
T ss_pred EEEeCHh
Confidence 9988864
No 191
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=94.75 E-value=0.59 Score=51.30 Aligned_cols=148 Identities=18% Similarity=0.139 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCC--CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFP--TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYD 283 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p--~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~d 283 (525)
+++|.+.+++..==.+++ +.|+..+ +|.+.+. =+++.+ ..|++++.+|.|.|.. |.-.++. +..+.+..++-
T Consensus 15 a~~l~~~L~~~GV~~vFg--iPG~~~~-~l~dal~~~i~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~ 90 (530)
T PRK07092 15 RDATIDLLRRFGITTVFG--NPGSTEL-PFLRDFPDDFRYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMG 90 (530)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCCcch-HHHHHHhhcCCEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHH
Confidence 455555555543222333 2233322 2333322 367755 8999999999999996 5443333 36677666655
Q ss_pred HHHHHhhcCCCCeEEEEcCCCCCC-CCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 284 QVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 284 qi~~~~~~~~~pvvi~~~~~G~~g-~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
-+ ..+...+.||+++........ ..+..+|..+...+++.+-.+. +...++.++...+..|+.. ..+||||-+
T Consensus 91 gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (530)
T PRK07092 91 NL-FTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWS-IEPARAEDVPAAIARAYHIAMQPPRGPVFVSI 168 (530)
T ss_pred HH-HHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccce-eecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 53 345567899998865433211 1223223233346777666553 3446788887777777653 246999988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
+..
T Consensus 169 P~d 171 (530)
T PRK07092 169 PYD 171 (530)
T ss_pred cHH
Confidence 764
No 192
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.73 E-value=0.67 Score=51.57 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=78.1
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEee-chhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t-~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ ..|+++..+|.|.|.. |+..++.+ +++.+..++--+ ..+-..+.||+++.............+|..+...+
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l 122 (588)
T PRK07525 45 RFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPM 122 (588)
T ss_pred CEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhh
Confidence 56666 8999999999999986 65555444 788877666554 33555789999987443321111234666666667
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecCCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 362 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~~ 362 (525)
++.+-.+ .+...++.++...+..|+. ...+||||-++...
T Consensus 123 ~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 123 FEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 7765443 5566778777777777754 24589999988653
No 193
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.69 E-value=0.79 Score=51.00 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=76.6
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
=|++.+ ..|++++.+|.|.|.. |...++. ++++.+..++--+ ..+...+.||+++..........-..+|..+...
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 137 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVG 137 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 367777 8999999999999986 6544444 4788887776554 3455679999998754443111112355554455
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
+++.+--+ .....++.++...+..|+.. ..+||||-++..
T Consensus 138 l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 138 ITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 66665543 44556777777777666542 247999988875
No 194
>PRK07586 hypothetical protein; Validated
Probab=94.68 E-value=0.72 Score=50.39 Aligned_cols=149 Identities=15% Similarity=0.076 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCC-CCeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRA 281 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p-~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a 281 (525)
++.|.+.+++..--.+++ +.|+..+ +.+.+ .+ =|++.+ ..|+++..+|.|.|.. |...++ .++.+.+..+
T Consensus 4 ~~~l~~~L~~~Gv~~vFG--~pG~~~~~l~dal~~-~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 79 (514)
T PRK07586 4 AESLVRTLVDGGVDVCFA--NPGTSEMHFVAALDR-VPGMRCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANG 79 (514)
T ss_pred HHHHHHHHHHCCCCEEEE--CCCCchHHHHHHHhc-cCCCeEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHH
Confidence 456666666654333444 2344433 22322 22 267766 8999999999999986 654444 3588888776
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 357 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~ 357 (525)
+--+. .+...+.||+++.............||......+++.+--+ .+...++.++...+..|+.. ..+||||-
T Consensus 80 ~~gl~-~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~ 157 (514)
T PRK07586 80 LANLH-NARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLI 157 (514)
T ss_pred HHHHH-HHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 55533 35567999998864433211111234544444566654332 55677777777777777642 35799998
Q ss_pred ecCCC
Q 009809 358 YPRGN 362 (525)
Q Consensus 358 ~~~~~ 362 (525)
++...
T Consensus 158 iP~Dv 162 (514)
T PRK07586 158 LPADV 162 (514)
T ss_pred eccch
Confidence 88753
No 195
>PRK05858 hypothetical protein; Provisional
Probab=94.62 E-value=0.65 Score=51.10 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhh
Q 009809 242 PTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDV 319 (525)
Q Consensus 242 p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~ 319 (525)
.=|++.+ ..|+++..+|.|.|.. |.-.++. ++.+.+..++--+ ..+...+.||+++.........+...+|..+..
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3467777 8999999999999997 5433333 4778876666553 445668999998874433211122346666555
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
.+++.+--+ .....++.++...+..|+.. ..+||+|-++..
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 677765543 55667788888887777643 247999988864
No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.60 E-value=1.3 Score=40.55 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=71.0
Q ss_pred CeeeccchHHHHHHHHHHHhcCCCeEE-EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCC-----cc
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEGLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH-----CG 315 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G~~pi-~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH-----~~ 315 (525)
|++. .-.|+++..+|.|.+..-...+ +.+..+.+..++..+. .+...+.||+++...... .+.....| +.
T Consensus 37 ~~i~-~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~-~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~ 114 (162)
T cd07038 37 RWVG-NCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIA-GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGD 114 (162)
T ss_pred eEEe-eCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHH-HHHHcCCCEEEEecCCCccccccccceeecccccc
Confidence 4444 4899999999999999752223 3336788877776654 355678999998744332 12212223 22
Q ss_pred hh-hhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecC
Q 009809 316 SF-DVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPR 360 (525)
Q Consensus 316 ~~-d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~ 360 (525)
.+ ...+++.+-.+ .+...++.++..+++.|+.. ..+||+|-+++
T Consensus 115 ~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 115 FDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred hHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 22 25667655444 44456777777777777642 35799987654
No 197
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.56 E-value=0.71 Score=51.43 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 281 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a 281 (525)
.+++|.+.+++..-=.+++ +.|+..+ +.+.+...=|++.+ ..|++++.+|.|.|.. |...++. ++++.+..+
T Consensus 13 ~a~~l~~~L~~~GV~~vFG--vpG~~~~~l~dal~~~~~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 89 (595)
T PRK09107 13 GAEMVVQALKDQGVEHIFG--YPGGAVLPIYDEIFQQDDIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNA 89 (595)
T ss_pred HHHHHHHHHHHCCCCEEEE--ccCcchHHHHHHHhhcCCCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHH
Confidence 4677777777665333444 2233322 33322212367777 9999999999999974 7555544 488888777
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 357 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~ 357 (525)
+--+ ..+-..+.||+++.............+|......+++.+--+ .+...++.++...+..|+.. ..+||||-
T Consensus 90 l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~ 167 (595)
T PRK09107 90 VTPL-QDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVD 167 (595)
T ss_pred HHHH-HHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEe
Confidence 6553 345567899998875433211111346655545566654332 44567788888888777653 25799998
Q ss_pred ecCC
Q 009809 358 YPRG 361 (525)
Q Consensus 358 ~~~~ 361 (525)
++..
T Consensus 168 iP~D 171 (595)
T PRK09107 168 IPKD 171 (595)
T ss_pred cCCC
Confidence 8875
No 198
>PRK07524 hypothetical protein; Provisional
Probab=94.46 E-value=0.93 Score=49.80 Aligned_cols=148 Identities=20% Similarity=0.163 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhC---CCCeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF---PTRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~---p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~ 282 (525)
++.|.+.+++..=-.+++ +.|+..+ +|.+.. .=|++.+ -.|.+++.+|-|.|.. |...++ .|.++.+..++
T Consensus 5 a~~l~~~L~~~Gv~~vFg--~pG~~~~-~~~dal~~~~i~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~ 80 (535)
T PRK07524 5 GEALVRLLEAYGVETVFG--IPGVHTV-ELYRGLAGSGIRHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIA 80 (535)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCcchH-HHHHHHhhcCCcEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 456666666554223333 2333332 222222 2366666 8999999999999985 544444 35788887776
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCC--CCCC-CCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEE
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSC 355 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~--~g~~-G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~ 355 (525)
--+ ..+...+.||+++...... .+.+ +..|+......+++.+--+ .+...++.++...+..|+.. ..+|||
T Consensus 81 ~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~ 158 (535)
T PRK07524 81 TAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAF-SHTLMSAEDLPEVLARAFAVFDSARPRPVH 158 (535)
T ss_pred HHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhcee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 554 3455679999988744332 1221 2445434445677754432 56677788888877777642 357999
Q ss_pred EEecCC
Q 009809 356 FRYPRG 361 (525)
Q Consensus 356 i~~~~~ 361 (525)
|-+++.
T Consensus 159 l~iP~D 164 (535)
T PRK07524 159 IEIPLD 164 (535)
T ss_pred EEeCHh
Confidence 988864
No 199
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.45 E-value=0.54 Score=51.99 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=76.6
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
=|++.+ ..|+++..+|.|.|.. |.-.++. |+++.+..++--+ ..+...+.||+++..........-..+|......
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 129 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYG 129 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhh
Confidence 367775 9999999999999997 5433333 5788877666554 3466789999988754332111122355554445
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
+++.+--+ .+.-.++.++...+..|+.. ..+||||-++..
T Consensus 130 ~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 130 ISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 66655444 33445788888888777653 248999988764
No 200
>PRK08322 acetolactate synthase; Reviewed
Probab=94.44 E-value=0.81 Score=50.38 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
+++|.+.+++..=-.+++ +.|+..+ +.+. +..=+++.+ ..|++++.+|.|.|.. |...++. |+++.+..++
T Consensus 4 ~~~l~~~L~~~Gv~~vFg--~pG~~~~~l~dal~-~~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~ 79 (547)
T PRK08322 4 ADLFVKCLENEGVEYIFG--IPGEENLDLLEALR-DSSIKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLV 79 (547)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCcchHHHHHHHH-hcCCcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHH
Confidence 455666666554333343 2233332 3332 222366666 8999999999999996 5544444 4788887676
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
--+ ..+-..+.||+++..........-..||..+...+++.+-.+ .+...++.++..++..|+.. ..+||+|-+
T Consensus 80 ~~i-~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 157 (547)
T PRK08322 80 TGV-AYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLEL 157 (547)
T ss_pred HHH-HHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEc
Confidence 554 345668999998874433211111235555555677755433 56777888888888777653 247999988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
+..
T Consensus 158 P~d 160 (547)
T PRK08322 158 PED 160 (547)
T ss_pred Chh
Confidence 764
No 201
>PRK08611 pyruvate oxidase; Provisional
Probab=94.41 E-value=0.87 Score=50.53 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=76.0
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ ..|+++..+|.|.|.. |...++. |+++.+..++--+ ..+...+.||+++..........-..+|..+...+
T Consensus 45 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l 122 (576)
T PRK08611 45 KFIQV-RHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKM 122 (576)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHHH
Confidence 66664 8999999999999985 6444433 4788887776554 34556789999987544431111123555555567
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~ 361 (525)
++.+--+ .+...++.++...+..|+.. ..+||||-++..
T Consensus 123 ~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 123 FEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred hhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 7765443 44566777777777766542 358999988875
No 202
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.33 E-value=0.94 Score=50.65 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRA 281 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a 281 (525)
.+++|.+.+++..--.+++ +.|+..+ +.+.+.-.=+++.+ ..|++++.+|.|.|.. |...++ .++++.+..+
T Consensus 33 ~a~~l~~~L~~~GV~~vFg--ipG~~~~~l~dal~~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 109 (612)
T PRK07789 33 GAQAVVRSLEELGVDVVFG--IPGGAILPVYDPLFDSTKVRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNL 109 (612)
T ss_pred HHHHHHHHHHHCCCCEEEE--cCCcchHHHHHHHhccCCceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 3566677776654333343 2233332 22322112356666 8999999999999986 655544 3478888767
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 357 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~ 357 (525)
+--+ ..+...+.||+++.............+|..+...+++.+-.+ .+...++.++..++..|+.. ..+||+|-
T Consensus 110 l~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~ 187 (612)
T PRK07789 110 VTPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVD 187 (612)
T ss_pred HHHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 6554 445667999999875444311111235555555666655443 44567888888888887753 24799998
Q ss_pred ecCC
Q 009809 358 YPRG 361 (525)
Q Consensus 358 ~~~~ 361 (525)
++..
T Consensus 188 iP~D 191 (612)
T PRK07789 188 IPKD 191 (612)
T ss_pred Eccc
Confidence 8865
No 203
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.28 E-value=1 Score=49.95 Aligned_cols=148 Identities=15% Similarity=0.057 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
++.|.+.+++..-=.+++ +.|+..+ +.+.+ ..=+++.+ -.|++++.+|.|.|.. |...++. ++++.+..++
T Consensus 18 a~~l~~~L~~~GV~~vFG--ipG~~~~~l~dal~~-~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~ 93 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFG--YPGGAILPVYDALYE-SGLKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLV 93 (570)
T ss_pred HHHHHHHHHHcCCCEEEE--cCCcchHHHHHHHHh-cCCcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 466666666554222333 1233332 33322 22367776 8999999999999985 6544444 4888887776
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
--+ ..+-..+.||+++..........-..+|..+...+++.+-.+ .+...+++++..++..|+.. ..+|||+.+
T Consensus 94 ~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 171 (570)
T PRK06725 94 TGL-ADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDI 171 (570)
T ss_pred HHH-HHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcc
Confidence 554 334557899998875433211111235555445666655443 45567888888888888653 358999988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
+..
T Consensus 172 P~D 174 (570)
T PRK06725 172 PKD 174 (570)
T ss_pred ccc
Confidence 864
No 204
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.26 E-value=0.65 Score=51.48 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=77.4
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
+++.+ -.|+++..+|.|.|.. |...++. |+++.+..++--+ ..+...+.||+++..........-..+|..+...+
T Consensus 44 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06466 44 EHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGI 121 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 56666 8999999999999985 5444433 4788887776554 34556789999987544331111123666555567
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+--+ .+...++.++..++..|+.. ..+|||+.++..
T Consensus 122 ~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 122 SRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7765554 45566788777777777643 258999988875
No 205
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.18 E-value=1 Score=49.85 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=76.8
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ -.|++++.+|.|.|.. |...++. ++.+.+..++--+ ..+-..+.||+++.............+|..+...+
T Consensus 44 ~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 121 (572)
T PRK08979 44 EHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhHH
Confidence 67777 8999999999999986 7555544 4788887666554 33455789999887544321111123555555566
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+--+ .....++.++...+..|+.. ..+||||.++..
T Consensus 122 ~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 122 SRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 6755443 44556788888888877652 347999988764
No 206
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=94.13 E-value=1 Score=49.76 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=76.6
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ ..|+++..+|.|.|.. |...++. |+++.+..++--+ ..+-..+.||+++..........-..+|..+...+
T Consensus 48 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 125 (557)
T PRK08199 48 RVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFREREAFQEIDYRRM 125 (557)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCcccccCHHHh
Confidence 56666 8999999999999996 5433333 4788887776554 34556789999887543321111123566655667
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+-.+ .+...++.++...+..|+.. ..+||+|.++..
T Consensus 126 ~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 126 FGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred hhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7765544 44457788888877777652 357999988864
No 207
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=94.09 E-value=0.073 Score=56.88 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=72.2
Q ss_pred CCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHHh
Q 009809 11 KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 90 (525)
Q Consensus 11 ~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 90 (525)
...++.++||=++-.- ..+|-+......|+++|+.||+.- |.+ ++|.
T Consensus 439 ~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGG--------------gIF-~~Lp---------------- 485 (566)
T COG1165 439 QKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGG--------------GIF-SLLP---------------- 485 (566)
T ss_pred CCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCc--------------eee-eecc----------------
Confidence 4459999999998533 123444555568888877777642 112 0110
Q ss_pred hhhcccCCchHHHHH--HHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCC
Q 009809 91 GVTKQIGGPMHELAA--KVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGR 168 (525)
Q Consensus 91 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~ 168 (525)
+-.. ..+++-..++.-++..+.+.||..|..+ +..+++.++++.+-. ..+-++|+++|.+-.
T Consensus 486 -----------~~~~~~~fe~~F~tPh~ldF~~la~~y~l~y~~~---~s~~~l~~~~~~~~~--~~g~~viEvkt~r~~ 549 (566)
T COG1165 486 -----------QAQSEPVFERLFGTPHGLDFAHLAATYGLEYHRP---QSWDELGEALDQAWR--RSGTTVIEVKTDRSD 549 (566)
T ss_pred -----------CCCCcchHHHhcCCCCCCCHHHHHHHhCcccccc---CcHHHHHHHHhhhcc--CCCcEEEEEecChhH
Confidence 0000 1223334555667777888899998866 889999999988876 567899999997655
Q ss_pred Cc
Q 009809 169 GY 170 (525)
Q Consensus 169 g~ 170 (525)
+.
T Consensus 550 ~~ 551 (566)
T COG1165 550 GA 551 (566)
T ss_pred HH
Confidence 43
No 208
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.01 E-value=0.93 Score=50.23 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCC---CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPT---RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQ 279 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~---r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~ 279 (525)
.+.|.+.+++..-=.+++ +.|+..+ +.+.+..++ |++.+ ..|+++..+|.|.|.. |.-.++. |+++.+.
T Consensus 5 ~~~l~~~L~~~GV~~vFg--~pG~~~~~l~dal~~~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 5 ARILVDSLKREGVKVIFG--IPGLSNMQIYDAFVEDLANGELRHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCcchHHHHHHHHhhccCCCCeEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 456666666554223333 2233332 344332222 56666 8999999999999986 6544444 5888887
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCc
Q 009809 280 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRP 353 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~P 353 (525)
.++--+ ..+-..+.||+++...... .+. ..+|..+...+++.+--+ .+...++.++...+..|+.. ..+|
T Consensus 82 N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GP 157 (572)
T PRK06456 82 NLVTGL-ITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGP 157 (572)
T ss_pred HHHHHH-HHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 776554 3455678999998754332 222 234544445677765544 34446788888877777642 3589
Q ss_pred EEEEecCC
Q 009809 354 SCFRYPRG 361 (525)
Q Consensus 354 v~i~~~~~ 361 (525)
|||-++..
T Consensus 158 V~l~iP~D 165 (572)
T PRK06456 158 VVIDIPRD 165 (572)
T ss_pred EEEecChh
Confidence 99988864
No 209
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.00 E-value=0.83 Score=50.38 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=74.8
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
+++.+ ..|+++..+|.|.|.. |.-.++ .|+++.+..++--+ ..+-..+.||+++............++|..+...+
T Consensus 41 ~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l 118 (549)
T PRK06457 41 KYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKL 118 (549)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 45555 8999999999999996 543333 34788877666553 34556789999886443321111234566555667
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~ 361 (525)
++.+--+ .+...++.++...+..|+.. ..+||+|-++..
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 119 FDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 7754443 45566677777777766542 368999988864
No 210
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.94 E-value=0.4 Score=44.15 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=65.0
Q ss_pred hCCCCeeeccc--hHHHHHHHHHHHhcCC-CeEEEeech--hhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCCCC----C
Q 009809 240 RFPTRCFDVGI--AEQHAVTFAAGLACEG-LKPFCAIYS--SFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA----D 309 (525)
Q Consensus 240 ~~p~r~~~~gI--aE~~~~~~a~G~A~~G-~~pi~~t~~--~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~g~----~ 309 (525)
..|.+++..+. +=...+++|.|++++. -++++++.+ .|+... .. +..++..++|++++. .+.|+... .
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~~-~e-l~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFSG-ME-LETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCCH-HH-HHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 45788887542 2223555777888775 366666654 444322 22 456777899976666 44443110 0
Q ss_pred ----CCCCc----chhhh-hhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEE
Q 009809 310 ----GPTHC----GSFDV-TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 357 (525)
Q Consensus 310 ----G~tH~----~~~d~-~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~ 357 (525)
+..+. ...|+ .+.+. -|+..+.-.++.|+...+++++. .++|+++-
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~lie 168 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALIN 168 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEE
Confidence 00000 11122 22233 25666677789999999999875 57898764
No 211
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.92 E-value=1.6 Score=48.49 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCC-CCeeeccchHHHHHHHHHHHhcC--CCeEEEe-echhhHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE--GLKPFCA-IYSSFMQR 280 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p-~r~~~~gIaE~~~~~~a~G~A~~--G~~pi~~-t~~~F~~~ 280 (525)
++.|.+.+++..-=.+++ +.|...+ +.+.+ .+ =|++.+ -.|++++.+|.|.|.. |...++. |+++....
T Consensus 6 a~~l~~~L~~~GV~~vFG--vpG~~~~~l~dal~~-~~~i~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 6 VDAAVYVLEKEGITTAFG--VPGAAINPFYSALKA-HGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCCCcHHHHHHHhh-cCCCcEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 455666666554223333 1233222 33322 22 266665 7899999999999985 4444443 47888766
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEE
Q 009809 281 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCF 356 (525)
Q Consensus 281 a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i 356 (525)
++--+ ..+...+.||+++.............+|..+...+++.+--+ .+...++.++...++.|+.. ..+||||
T Consensus 82 ~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l 159 (588)
T TIGR01504 82 MITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLI 159 (588)
T ss_pred HHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEE
Confidence 65553 345567899999875433211112235555555677765443 44556788888888888752 2469999
Q ss_pred EecCCC
Q 009809 357 RYPRGN 362 (525)
Q Consensus 357 ~~~~~~ 362 (525)
-++...
T Consensus 160 ~iP~Dv 165 (588)
T TIGR01504 160 DLPFDV 165 (588)
T ss_pred EeCcch
Confidence 888753
No 212
>PRK08617 acetolactate synthase; Reviewed
Probab=93.89 E-value=0.95 Score=49.92 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=78.6
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
=+++.+ ..|+++..+|.|.|.. |...++ .|+++.+..++--+ ..+...+.||+++..........-..||......
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~ 120 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVA 120 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccchhh
Confidence 356666 8999999999999997 544443 34788887776554 3455678999988754332111123477766667
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
+++.+--+ .+...++.++...+..|+.. ..+||+|-++..
T Consensus 121 l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 121 LFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 77766543 55667788888888777653 246999988764
No 213
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.75 E-value=1.5 Score=48.33 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=76.7
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ ..|++++.+|.|.|.. |...++. |+++.+..++--+ ..+-..+.||+++..........-..+|..+...+
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 117 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGL 117 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhcc
Confidence 56666 8999999999999996 6544444 4788876666553 34556789999987544431111123565555567
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+-.+ .+.-.++.++...+..|+.. ..+||+|-++..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 118 SLACTKH-SFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred ccCceee-EEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 7765554 33345788888888877653 247999988864
No 214
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.71 E-value=1.5 Score=48.27 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
++.|.+.+++..==.+++ +.|...+ +.+.+. .=||+.+ --|+++..+|.|.|.. |+-.++. |.++......
T Consensus 5 a~~lv~~L~~~GV~~VFG--iPG~~i~~~~dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 5 AEALVEALEANGVDTVFG--IPGGSILPLYDALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred HHHHHHHHHHcCCcEEEe--CCCccHHHHHHHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 356667776665334454 2233322 344444 4477777 8999999999999995 6654444 4888887666
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
.-+ .++-+-+.|++++..........-..+|..+..++++.+-.+ .+...+++|+-..+..||+. ..+|+++-+
T Consensus 81 tgl-a~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 81 TGL-ADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred HHH-HHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 553 455667899998865433211122456666666677654433 66788889999999888763 236899988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
++.
T Consensus 159 P~D 161 (550)
T COG0028 159 PKD 161 (550)
T ss_pred Chh
Confidence 774
No 215
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=93.49 E-value=1.6 Score=48.51 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=72.3
Q ss_pred CeeeccchHHHHHHHHHHHhcCCCeEEEe--echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G~~pi~~--t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ -.|+++..+|.|.|....+|-++ ++++....++.-+ ..+...++||+++.............||......+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l 120 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQEL 120 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhhh
Confidence 55555 69999999999999974344443 3677776655553 34556789999886433321111234666666677
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~ 361 (525)
++.+--+ .....+++++...+..|+. ...+|||+-++..
T Consensus 121 ~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 121 FRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred cccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 7755433 3345666666665555543 2458999988764
No 216
>PLN02470 acetolactate synthase
Probab=93.46 E-value=1.5 Score=48.87 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=77.6
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
=|++.+ -.|++++.+|.|.|.. |...++ .|+++.+..++--+ ..+-..+.||+++..........-..+|......
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 129 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 129 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCCCcCcccchhh
Confidence 367777 8999999999999985 655444 44888887776554 3455678999998644332111112355555556
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
+++.+-.+ .+...+++++..++..|+.. ..+||||-++..
T Consensus 130 l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 130 VTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 66654433 33456888888888888653 248999988864
No 217
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=93.40 E-value=1.6 Score=48.34 Aligned_cols=116 Identities=15% Similarity=0.071 Sum_probs=74.4
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
=+++.+ -.|.++..+|.|.|.. |.-.++. ++.+.+..++--+ ..+-..+.||+++.........+..++|......
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 356666 8999999999999985 5444444 4788887776553 3455678999998754443222334566665556
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecCC
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 361 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~ 361 (525)
+++.+--+ .....++.++...+..|+. ...+||||-++..
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 66654332 2344556666555555443 2568999988865
No 218
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=93.38 E-value=1.5 Score=40.62 Aligned_cols=144 Identities=19% Similarity=0.108 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcc--hHHHHHhCCCCeeeccc-hHH-HHHHHHHHHhcCC-CeEEEee--chhhHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTG--LNLFLRRFPTRCFDVGI-AEQ-HAVTFAAGLACEG-LKPFCAI--YSSFMQ 279 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~--l~~~~~~~p~r~~~~gI-aE~-~~~~~a~G~A~~G-~~pi~~t--~~~F~~ 279 (525)
+-+.|.+.+.. +.+ +..|.+.... ...+.-..|.+++..+. .=. .+++.|.|++++. .++++++ -+.|++
T Consensus 7 ~~~~l~~~~~~--~~i-i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~ 83 (178)
T cd02014 7 VAAELNKRAPD--DAI-FTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAM 83 (178)
T ss_pred HHHHHHhHCCC--CeE-EEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHh
Confidence 33445555532 333 3345543221 12233345677776543 221 2455667777653 3455555 456664
Q ss_pred HHHHHHHHHhhcCCCCeEEEE-cCCCCC---------C--CCCCCCcchhhh-hhhhcCCCcEEEccCCHHHHHHHHHHH
Q 009809 280 RAYDQVVHDVDLQKLPVRFAM-DRAGLV---------G--ADGPTHCGSFDV-TFMACLPNMVVMAPSDEAELFHMVATA 346 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~-~~~G~~---------g--~~G~tH~~~~d~-~~~~~ipg~~v~~P~~~~e~~~~~~~a 346 (525)
-..| +..+...++|++++. .+.++. + ..+...+. .|+ .+... -|+..+...++.|+...++++
T Consensus 84 ~~~e--l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~la~a-~G~~~~~v~~~~el~~~l~~a 159 (178)
T cd02014 84 LMGD--LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPN-PDFAKIAEA-MGIKGIRVEDPDELEAALDEA 159 (178)
T ss_pred hHHH--HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCC-CCHHHHHHH-CCCeEEEeCCHHHHHHHHHHH
Confidence 4434 355677899977666 444421 0 01111111 233 33344 377788888999999999999
Q ss_pred HhcCCCcEEEEe
Q 009809 347 AAIDDRPSCFRY 358 (525)
Q Consensus 347 ~~~~~~Pv~i~~ 358 (525)
+. .++|+++-.
T Consensus 160 ~~-~~~p~liev 170 (178)
T cd02014 160 LA-ADGPVVIDV 170 (178)
T ss_pred Hh-CCCCEEEEE
Confidence 75 578987754
No 219
>PLN02573 pyruvate decarboxylase
Probab=93.37 E-value=1.4 Score=49.04 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhC---C-CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF---P-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQR 280 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~---p-~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~ 280 (525)
.+++|.+.+++..-=.+++ +.|...+ +|.+.. + =+++.+ ..|+++..+|-|.|.. | .+++. |+.+....
T Consensus 18 ~a~~l~~~L~~~Gv~~vFG--vpG~~~~-~l~dal~~~~~i~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n 92 (578)
T PLN02573 18 LGRHLARRLVEIGVTDVFS--VPGDFNL-TLLDHLIAEPGLNLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLS 92 (578)
T ss_pred HHHHHHHHHHHcCCCEEEE--CCCCchH-HHHHHHhhcCCceEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHH
Confidence 4566666666654323343 2233322 222222 1 245555 8999999999999985 7 55544 47888766
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcch------hhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh---c
Q 009809 281 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS------FDVTFMACLPNMVVMAPSDEAELFHMVATAAA---I 349 (525)
Q Consensus 281 a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~------~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~ 349 (525)
+.--+. .+-..+.||+++...... .+.++..||.. .+..+++.+-.+ .....++.++...+..|+. .
T Consensus 93 ~~~gla-~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~ 170 (578)
T PLN02573 93 VLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALK 170 (578)
T ss_pred HHHHHH-HHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHh
Confidence 655543 344578999998754332 23344455432 223455544332 3344556665555555543 2
Q ss_pred CCCcEEEEecCCC
Q 009809 350 DDRPSCFRYPRGN 362 (525)
Q Consensus 350 ~~~Pv~i~~~~~~ 362 (525)
..+||||-++...
T Consensus 171 ~~gPV~l~iP~Dv 183 (578)
T PLN02573 171 ESKPVYISVSCNL 183 (578)
T ss_pred cCCCEEEEeehhh
Confidence 4589999888753
No 220
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.33 E-value=1.4 Score=49.04 Aligned_cols=149 Identities=10% Similarity=0.001 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC--CCeE-EEeechhhHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE--GLKP-FCAIYSSFMQRA 281 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~--G~~p-i~~t~~~F~~~a 281 (525)
+++|.+.+++..-=.+++- .|+..+ +.+.+...=|++.+ ..|++++.+|.|.|.. |... ++.|+++.+..+
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~--pG~~~~~l~dal~~~~~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~ 83 (591)
T PRK11269 7 VDAAVLVLEKEGVTTAFGV--PGAAINPFYSAMRKHGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDM 83 (591)
T ss_pred HHHHHHHHHHcCCCEEEeC--CCcccHHHHHHHhhcCCCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHH
Confidence 4566666665542233331 233222 33432212377777 8999999999999985 4443 344588887666
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 357 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~ 357 (525)
+--+ ..+...+.||+++..........-..+|..+...+++.+--+ .+...++.++...++.|+.. ..+||||-
T Consensus 84 l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 161 (591)
T PRK11269 84 ITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLID 161 (591)
T ss_pred HHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 5543 345567899998875433211111236665555677754433 44567788888888877653 24799998
Q ss_pred ecCC
Q 009809 358 YPRG 361 (525)
Q Consensus 358 ~~~~ 361 (525)
++..
T Consensus 162 iP~D 165 (591)
T PRK11269 162 LPFD 165 (591)
T ss_pred eChh
Confidence 8864
No 221
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.32 E-value=1.8 Score=48.12 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
.+.|.+.+++..-=.+++ +.|+..+ +.+.+ ..=+++.+ ..|.+++.+|.|.|.. |.-.++. ++++.+..++
T Consensus 4 ~~~l~~~L~~~Gv~~vFg--~pG~~~~~l~~al~~-~~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l 79 (586)
T PRK06276 4 AEAIIKALEAEGVKIIFG--YPGGALLPFYDALYD-SDLIHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLV 79 (586)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCcchHHHHHHHHh-CCCcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 355666665544223333 2233322 33322 12266766 7999999999999986 6544444 4788887676
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
--+ ..+-..+.||+++.............+|..+...+++.+-.+ .+.-.+++++...+..|+.. ..+||||-+
T Consensus 80 ~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 157 (586)
T PRK06276 80 TGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDL 157 (586)
T ss_pred HHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 554 345568999998875433311122346655555677765543 34456677777777777653 247999988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
+..
T Consensus 158 P~D 160 (586)
T PRK06276 158 PKD 160 (586)
T ss_pred Chh
Confidence 864
No 222
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=93.30 E-value=1.3 Score=44.34 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchH---HHHHHHHHHHhcCC-CeEEEeec--hh
Q 009809 203 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAE---QHAVTFAAGLACEG-LKPFCAIY--SS 276 (525)
Q Consensus 203 ~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE---~~~~~~a~G~A~~G-~~pi~~t~--~~ 276 (525)
...++.++|.++.-..++.+ +..|+|.+.. .| +|+++.--- -.++.+|.|++++. -++++++. ++
T Consensus 12 i~~~~~~a~~~l~~~p~d~i-ivsdiGc~~~-------~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~ 82 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVV-VVSGIGCSAK-------TP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGD 82 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEE-EEECCCcccc-------cC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchH
Confidence 34667777777654334544 4458876542 33 555543211 23556788887764 45666664 44
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEE-cCCCC--CC-CCCCC--C---------------cchhhhhhhhcCCCcEEEccCC
Q 009809 277 FMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT--H---------------CGSFDVTFMACLPNMVVMAPSD 335 (525)
Q Consensus 277 F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~--~g-~~G~t--H---------------~~~~d~~~~~~ipg~~v~~P~~ 335 (525)
|+...... +..++..++|++++. ++.++ ++ ...++ + .....+++.....-.-.....+
T Consensus 83 f~~mg~~e-L~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~ 161 (287)
T TIGR02177 83 LYGIGGNH-FVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGD 161 (287)
T ss_pred HHhccHHH-HHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCC
Confidence 44333333 345667899977776 33332 21 11001 0 0111122222222122333689
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEe
Q 009809 336 EAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 336 ~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
++|+...+++|+. .++|++|-.
T Consensus 162 ~~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 162 VAHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999985 688987643
No 223
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.28 E-value=1.5 Score=48.58 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
.+.|.+.+++..-=.+++ +.|+..+ +.+.+...=|++.+ ..|+++..+|.|.|.. |...++. |+++.+..++
T Consensus 7 a~~l~~~L~~~GV~~vFg--~pG~~~~~l~~al~~~~~i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l 83 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFG--YPGGSVLDIYDAIHTLGGIEHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAI 83 (574)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCcchHHHHHHHhhcCCCeEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHH
Confidence 456666666554223333 2233332 23322111266666 9999999999999986 6444444 4788887776
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEe
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 358 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~ 358 (525)
--+ ..+-..+.||+++..........-..+|..+...+++.+-.+ .....++.++...+..|+.. ..+||||-+
T Consensus 84 ~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (574)
T PRK06882 84 TGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDI 161 (574)
T ss_pred HHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Confidence 554 345567899998875433211112235655555667654433 45567788888778777652 358999988
Q ss_pred cCC
Q 009809 359 PRG 361 (525)
Q Consensus 359 ~~~ 361 (525)
+..
T Consensus 162 P~D 164 (574)
T PRK06882 162 PKD 164 (574)
T ss_pred CHH
Confidence 764
No 224
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=93.26 E-value=1.4 Score=48.82 Aligned_cols=115 Identities=14% Similarity=0.020 Sum_probs=74.7
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ -.|++++.+|.|.|.. |.-.++. +.++.+..++--+ ..+-..+.||+++..........-..+|......+
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l 120 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRL 120 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCccccChhhh
Confidence 56666 7999999999999997 5444443 3677776665553 34556789999887533221111123555555567
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~ 361 (525)
++.+--+ .+...++.++...+..|+. ...+||+|-++..
T Consensus 121 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 121 FVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred cccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 7754333 5566777777777776654 2457999988764
No 225
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.24 E-value=1.7 Score=48.25 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=75.8
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
=+++.+ ..|+++..+|.|.|.. |.-.++ .|.++++..++--+ ..+...++||+++.............+|..+...
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 467777 6999999999999986 543333 34678776665553 3455679999988744332111223466655566
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
+++.+--+ .....+++++...+..|+.. ..+|+||-++..
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 77765543 44566677777777777642 247999988764
No 226
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.20 E-value=2.1 Score=47.23 Aligned_cols=148 Identities=9% Similarity=-0.020 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcchHHHHH---hCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGLNLFLR---RFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~---~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
++.|.+.+++..-=.+++ +.|.. +..+.+ +-.=|++.+ -.|+++..+|.|.|.. |+..++. |+++....+.
T Consensus 6 ~~~l~~~L~~~GV~~vFG--vpG~~-~~~l~~~~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 81 (554)
T TIGR03254 6 FHLVIDALKLNGINTIYG--VVGIP-VTDLARLAQAKGMRYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGL 81 (554)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCcc-hhHHHHHHhhcCCcEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHH
Confidence 456666666554223333 22322 222222 212367766 8999999999999986 6544444 4788887676
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCC--CCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEE
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCF 356 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~--g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i 356 (525)
--+ ..+-..+.||+++....... +.....+|......+++.+-.+ .+...++.++...+..|+.. ..+||||
T Consensus 82 ~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l 159 (554)
T TIGR03254 82 TAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYL 159 (554)
T ss_pred HHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 553 34556789999886443321 1112346666566777765544 55666788877777776542 3468999
Q ss_pred EecCC
Q 009809 357 RYPRG 361 (525)
Q Consensus 357 ~~~~~ 361 (525)
-++..
T Consensus 160 ~iP~D 164 (554)
T TIGR03254 160 DLPAA 164 (554)
T ss_pred EcCHH
Confidence 88764
No 227
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.12 E-value=1.8 Score=47.78 Aligned_cols=146 Identities=17% Similarity=0.134 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~ 282 (525)
.+.|.+.+++..-=.+++ +.|...+ +.+. +..=+++.+ ..|++++.+|.|.|.. |...++. ++.+.+..++
T Consensus 11 ~~~l~~~L~~~Gv~~vFg--ipG~~~~~l~~al~-~~~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~ 86 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFG--YPGGAIIPVYDELY-DSDLRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLV 86 (561)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCcchHHHHHHHh-hCCCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHH
Confidence 456666666544222333 2233332 3332 222367777 8999999999999985 6544444 4788887776
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCC--CCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEE
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCF 356 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~~--g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i 356 (525)
--+ ..+-..+.||+++....... +. ..+|..+...+++.+-.+ .+.-.++.++..++..|+.. ..+||||
T Consensus 87 ~gl-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l 162 (561)
T PRK06048 87 TGI-ATAYMDSVPIVALTGQVPRSMIGN--DAFQEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLI 162 (561)
T ss_pred HHH-HHHhhcCCCEEEEeccCCccccCC--CCccccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 554 34556899999886443321 22 224444444555554332 33456778887777777652 3589999
Q ss_pred EecCC
Q 009809 357 RYPRG 361 (525)
Q Consensus 357 ~~~~~ 361 (525)
.++..
T Consensus 163 ~iP~d 167 (561)
T PRK06048 163 DLPKD 167 (561)
T ss_pred ecChh
Confidence 88864
No 228
>PRK08266 hypothetical protein; Provisional
Probab=93.11 E-value=1.8 Score=47.70 Aligned_cols=116 Identities=18% Similarity=0.117 Sum_probs=76.3
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCC-CCCcchh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG-PTHCGSF 317 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G-~tH~~~~ 317 (525)
=|++.+ ..|++++.+|.|.|.. |...++ .|+++.+..++--+ ..+...+.||+++...... .+.+. ..|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 366666 8999999999999986 544333 35788887776553 4466689999988644332 12222 2343335
Q ss_pred hhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 318 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 318 d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
...+++.+-.+ .+...+++++...+..|+.. ..+||++-++..
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 55677765543 45566677777777777642 357999988764
No 229
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.00 E-value=1.8 Score=48.33 Aligned_cols=147 Identities=14% Similarity=0.056 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCC-CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 281 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p-~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a 281 (525)
+++|.+.+++..=-.+++- .|...+ +.+.+..+ =+++.+ -.|+++..+|.|.|.. |...++. |+++.+..+
T Consensus 6 a~~l~~~L~~~GV~~vFGv--pG~~~~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 82 (597)
T PRK08273 6 ADFILERLREWGVRRVFGY--PGDGINGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHL 82 (597)
T ss_pred HHHHHHHHHHCCCCEEEEe--CCCchHHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 5667777765542223331 133322 33333222 356666 8999999999999986 6544444 488888777
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCC-CcEEEccCCHHHHHHHHHHHHhc---CCCcEE
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLP-NMVVMAPSDEAELFHMVATAAAI---DDRPSC 355 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ip-g~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~ 355 (525)
+--+ ..+-.-++||+++...... .+. ..+|..+...+++.+- -+ .....++.++...+..|+.. ..+|||
T Consensus 83 ~~gi-~~A~~d~vPvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~ 158 (597)
T PRK08273 83 LNGL-YDAKLDHVPVVAIVGQQARAALGG--HYQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTA 158 (597)
T ss_pred HHHH-HHHHhcCCCEEEEecCCchhhcCC--CCCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 6554 3455678999988754332 222 2355544445666543 22 44556666766666666542 457999
Q ss_pred EEecCC
Q 009809 356 FRYPRG 361 (525)
Q Consensus 356 i~~~~~ 361 (525)
|.++..
T Consensus 159 i~iP~D 164 (597)
T PRK08273 159 VILPND 164 (597)
T ss_pred EEeCcc
Confidence 988864
No 230
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.91 E-value=2.3 Score=47.12 Aligned_cols=116 Identities=10% Similarity=-0.007 Sum_probs=78.2
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCC--CCCCCCCcchhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGSFD 318 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~--g~~G~tH~~~~d 318 (525)
=|++.+ -.|+++..+|.|.+.. |...++. ++++++..++--+ ..+...+.||+++....... +..-.++|....
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 367766 8999999999999996 5555544 4788887776554 44556899999886433211 111234666666
Q ss_pred hhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 319 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 319 ~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
..+++.+-.+ .+...++.++...+..|+.. ..+|||+-++..
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 6677765543 45566788888877777653 357899988764
No 231
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.85 E-value=1.8 Score=43.22 Aligned_cols=148 Identities=12% Similarity=0.083 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCC-CeEEEeechhh--HH
Q 009809 203 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSSF--MQ 279 (525)
Q Consensus 203 ~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G-~~pi~~t~~~F--~~ 279 (525)
...++.++|.++....++.+ +..|+|.+..+..+.+ -..+.+.. ..++.+|.|++++. -++++++.+++ +.
T Consensus 18 il~al~~al~~l~~~~~~~i-vvsdiGc~~~~~~~~~---~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ 91 (279)
T PRK11866 18 ILEALRKALAELGIPPENVV-VVSGIGCSSNLPEFLN---TYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYG 91 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEE-EEECCchhhhhhhhcc---CCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHH
Confidence 45667777766544334544 4567776653322221 11222222 45566777877763 45666665433 34
Q ss_pred HHHHHHHHHhhcCCCCeEEEE-cCCCC--CC-CCCCC----------Cc-------chhhhhhhhcCCCcEEEccCCHHH
Q 009809 280 RAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT----------HC-------GSFDVTFMACLPNMVVMAPSDEAE 338 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~-~~~G~--~g-~~G~t----------H~-------~~~d~~~~~~ipg~~v~~P~~~~e 338 (525)
-.+.. +..++..++|++++. ++..+ ++ ...++ -. ....++.-...+.+....+.++.|
T Consensus 92 ig~~e-L~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 92 IGLGH-LPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred ccHHH-HHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 44444 345777899977766 33332 22 11000 00 111222222334445667799999
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q 009809 339 LFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+...++.|++ .++|.+|-.
T Consensus 171 l~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 171 LKEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999986 688987743
No 232
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=92.75 E-value=0.15 Score=60.85 Aligned_cols=114 Identities=19% Similarity=0.308 Sum_probs=73.5
Q ss_pred CeEEEEEccccc-ccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHHh
Q 009809 12 NNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 90 (525)
Q Consensus 12 ~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 90 (525)
..||++-|||.. .-| +..|..+...+.|+.+||.||..++-+.-+ .+.+.+.|.....
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ-~S~~tp~g~~t~~------------------ 1010 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQ-SSKATPTGAIAKF------------------ 1010 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCc-CCCCCCCcCcccc------------------
Confidence 479999999944 444 455777777889999999999866533322 2233333332100
Q ss_pred hhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccC-CCCHHHHHHHHHHhhhcCCCCCEEEEEEcc
Q 009809 91 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTE 165 (525)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d-G~d~~~l~~al~~a~~~~~~~P~~i~v~t~ 165 (525)
. -.|+.. ..++-..++.++|..|+..+. |.++.++.+++++|.+ .++|.+|++.++
T Consensus 1011 --~-~~g~~~--------------~kkd~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1011 --A-AAGKRT--------------SKKDLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred --C-CCCCCC--------------CCcCHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 0 000000 001112346678888887664 6799999999999988 689999999985
No 233
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.39 E-value=2.7 Score=38.94 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=65.9
Q ss_pred hCCCCeeeccc--hHHHHHHHHHHHhcC-CCeEEEeec--hhhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCCCC-----
Q 009809 240 RFPTRCFDVGI--AEQHAVTFAAGLACE-GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA----- 308 (525)
Q Consensus 240 ~~p~r~~~~gI--aE~~~~~~a~G~A~~-G~~pi~~t~--~~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~g~----- 308 (525)
..|.+|+..+- +=-..+..|.|++++ .-++++++. +.|++...| +..+...++|++++. .+.|+...
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~~e--L~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE--LETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHHHH--HHHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 44778886532 112234467777765 345666664 455544422 445667789977775 44543100
Q ss_pred --CC-CCCc--chhhhh-hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEec
Q 009809 309 --DG-PTHC--GSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYP 359 (525)
Q Consensus 309 --~G-~tH~--~~~d~~-~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~ 359 (525)
.+ ..+. ..-|+. +.+. -|..-+.-.++.|+...++++++ .++|.++-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAES-FGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHH-CCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 00 0111 011322 3333 25667777899999999999975 5789887543
No 234
>PRK06163 hypothetical protein; Provisional
Probab=92.23 E-value=7.3 Score=36.98 Aligned_cols=144 Identities=16% Similarity=0.152 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEecCCCCC-cchHHHHHhCCCCeeeccchHHHHHH----HHHHHhcCC-CeEEEeec-
Q 009809 202 SYTTYFAEALIAEAEVDKDVVAIHAAMGGG-TGLNLFLRRFPTRCFDVGIAEQHAVT----FAAGLACEG-LKPFCAIY- 274 (525)
Q Consensus 202 ~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s-~~l~~~~~~~p~r~~~~gIaE~~~~~----~a~G~A~~G-~~pi~~t~- 274 (525)
+...++ +.|.+.+..+ .+++ .|.|.. ..+... ...|.+++. .+.+| .|.|++++. -++++++.
T Consensus 14 ~~~~~i-~~l~~~l~~~-~~iv--~D~G~~~~~~~~~-~~~~~~~~~-----~GsMG~glpaAiGaalA~p~r~Vv~i~G 83 (202)
T PRK06163 14 NRFDLT-CRLVAKLKDE-EAVI--GGIGNTNFDLWAA-GQRPQNFYM-----LGSMGLAFPIALGVALAQPKRRVIALEG 83 (202)
T ss_pred CHHHHH-HHHHHhcCCC-CEEE--ECCCccHHHHHHh-hcCCCCeEe-----ecccccHHHHHHHHHHhCCCCeEEEEEc
Confidence 343433 5555555433 3433 365532 112111 235667774 34455 577777653 45666664
Q ss_pred -hhhHHHHHHHHHHHhh-cCCCCeEEEE-cCCCCCCCCCCC--Ccchhhhh-hhhcCCCcE-EEccCCHHHHHHHHHHHH
Q 009809 275 -SSFMQRAYDQVVHDVD-LQKLPVRFAM-DRAGLVGADGPT--HCGSFDVT-FMACLPNMV-VMAPSDEAELFHMVATAA 347 (525)
Q Consensus 275 -~~F~~~a~dqi~~~~~-~~~~pvvi~~-~~~G~~g~~G~t--H~~~~d~~-~~~~ipg~~-v~~P~~~~e~~~~~~~a~ 347 (525)
+.|++.+-| +..++ +.++|++++. .+.++.-..+.. +...-|+. +.+.+ |+. -+.-.+.+|+...+++++
T Consensus 84 DG~f~m~~~e--L~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~ 160 (202)
T PRK06163 84 DGSLLMQLGA--LGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQAL 160 (202)
T ss_pred chHHHHHHHH--HHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHH
Confidence 455544433 23343 4567866665 444431111111 11112332 33333 554 456789999999999997
Q ss_pred hcCCCcEEEEec
Q 009809 348 AIDDRPSCFRYP 359 (525)
Q Consensus 348 ~~~~~Pv~i~~~ 359 (525)
+ .++|.+|-..
T Consensus 161 ~-~~~p~lIeV~ 171 (202)
T PRK06163 161 S-GPGPSFIAVR 171 (202)
T ss_pred h-CCCCEEEEEE
Confidence 5 5789886543
No 235
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=92.11 E-value=2.4 Score=45.27 Aligned_cols=147 Identities=18% Similarity=0.094 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCeEE-EeechhhHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRA 281 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~~F~~~a 281 (525)
++.|.+.+++..=-.+++ +.|+..+ +.+. +.++ +++.+ ..|+++..+|-|.|.. |...+ +.|+++....+
T Consensus 3 ~~~l~~~L~~~GV~~vFg--~pG~~~~~l~dal~-~~~~i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 78 (432)
T TIGR00173 3 ASVLVEELVRLGVRHVVI--SPGSRSTPLALAAA-EHPRLRVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANL 78 (432)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCcccHHHHHHHH-hCCCcEEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhh
Confidence 355666666554222333 1233332 2332 2233 56655 8999999999999996 64444 34488887666
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcE--EEccCCH---HHHHHHHHHHHh----cC
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMV--VMAPSDE---AELFHMVATAAA----ID 350 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~--v~~P~~~---~e~~~~~~~a~~----~~ 350 (525)
+--+ ..+...+.||+++...... .+. ..+|......+++.+-.+. |-.|.+. .++...+..|+. -.
T Consensus 79 l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~ 155 (432)
T TIGR00173 79 LPAV-IEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPP 155 (432)
T ss_pred hHHH-HHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCC
Confidence 5553 3455688999998754332 122 2355555556777655433 2234431 014444444443 23
Q ss_pred CCcEEEEecCC
Q 009809 351 DRPSCFRYPRG 361 (525)
Q Consensus 351 ~~Pv~i~~~~~ 361 (525)
.+||+|-++..
T Consensus 156 ~GPV~l~iP~d 166 (432)
T TIGR00173 156 PGPVHINVPFR 166 (432)
T ss_pred CCCEEEeCCCC
Confidence 47999988864
No 236
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=92.08 E-value=3.7 Score=39.99 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=53.1
Q ss_pred HHHhcC-CCeEEEeec--hhhHHHHHHHHHHHhhcCCCCeEEEEc-CCCCCCCCCCCCcc--------------------
Q 009809 260 AGLACE-GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLVGADGPTHCG-------------------- 315 (525)
Q Consensus 260 ~G~A~~-G~~pi~~t~--~~F~~~a~dqi~~~~~~~~~pvvi~~~-~~G~~g~~G~tH~~-------------------- 315 (525)
.|++.+ --+|++++. +.|++..+.. +..+...++|++++.- +.++ |.-|.+++.
T Consensus 72 iGa~~a~p~r~VV~i~GDG~~~~m~~~e-L~ta~~~~~pv~~vVlNN~~y-g~tg~q~~~~~~~~~~~~~~~~g~~~~~~ 149 (235)
T cd03376 72 LKALGRGKDITVVAFAGDGGTADIGFQA-LSGAAERGHDILYICYDNEAY-MNTGIQRSGSTPYGAWTTTTPVGKVSFGK 149 (235)
T ss_pred HHHhccCCCCeEEEEEcCchHHhhHHHH-HHHHHHcCCCeEEEEECCccc-ccCCCCCCCCCCCCCEeecCCCCcccccc
Confidence 343334 357888875 4433344444 4567778999888774 3432 211111111
Q ss_pred ---hhhh-hhhhc--CCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEE
Q 009809 316 ---SFDV-TFMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 357 (525)
Q Consensus 316 ---~~d~-~~~~~--ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~ 357 (525)
.-|+ .+.+. ++++..+...++.|+...++++++ .++|++|-
T Consensus 150 ~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIe 196 (235)
T cd03376 150 KQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIH 196 (235)
T ss_pred ccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 0122 12222 223334578999999999999986 57898763
No 237
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.79 E-value=1.4 Score=48.99 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHh--CC-CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRR--FP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQ 279 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~--~p-~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~ 279 (525)
+++|.+.+++..-=.+++ +.|+..+ +.+.+. .+ =+++.+ ..|+++..+|.|.|.. |...++. ++++.+.
T Consensus 13 ~~~l~~~L~~~GV~~vFg--ipG~~~~~l~d~l~~~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 89 (585)
T CHL00099 13 AFALIDSLVRHGVKHIFG--YPGGAILPIYDELYAWEKKGLIKHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGAT 89 (585)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCcchHHHHHHHHhcCcCCCceEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHH
Confidence 456666666554223333 2233332 333321 12 256665 8999999999999986 6554443 4788877
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCc
Q 009809 280 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRP 353 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~P 353 (525)
.++--+ ..+-..+.||+++....+. .+.+ .+|..+...+++.+-.+ .....++.++..++..|+.. ..+|
T Consensus 90 N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GP 165 (585)
T CHL00099 90 NLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGP 165 (585)
T ss_pred HHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CccccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCe
Confidence 666553 4455678999998754432 1222 24444334455543322 44566788888888877653 2479
Q ss_pred EEEEecCC
Q 009809 354 SCFRYPRG 361 (525)
Q Consensus 354 v~i~~~~~ 361 (525)
|||-++..
T Consensus 166 V~l~iP~D 173 (585)
T CHL00099 166 VLIDIPKD 173 (585)
T ss_pred EEEecChh
Confidence 99988864
No 238
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.60 E-value=3.6 Score=46.03 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=76.7
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
||+.+ -.|++++.+|.|.|.. |+..++. +.++.+..++.-+ ..+..-+.||+++.............+|......+
T Consensus 62 ~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~ 139 (616)
T PRK07418 62 KHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGI 139 (616)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCcccccHHHH
Confidence 67777 9999999999999986 6554444 4788876666553 45666799999887544332111233555555566
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+--+ .....++.++...+..|+.. ..+|+|+.++..
T Consensus 140 ~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 140 TLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred hhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 6654432 34567778888777777653 348999988864
No 239
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=91.43 E-value=2.4 Score=46.99 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCeE-EEeechhh
Q 009809 204 TTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSF 277 (525)
Q Consensus 204 ~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~p-i~~t~~~F 277 (525)
..-.++.|.+.+++..--.+++ +.|...+ +.+. +.++ |++.+ ..|.++..+|.|.|.. |... ++.|+++.
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFg--vpG~~~~~l~~~l~-~~~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG 83 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVI--APGSRSTPLTLAAA-EHPRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTA 83 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE--CCCCccHHHHHHHH-hCCCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccH
Confidence 3445677777777765323333 1233322 2332 2222 66666 8999999999999986 5443 45568998
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHH----H-HHHHHHH---HHhc
Q 009809 278 MQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEA----E-LFHMVAT---AAAI 349 (525)
Q Consensus 278 ~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~----e-~~~~~~~---a~~~ 349 (525)
+..++--+ ..+...++||+++..........-..+|......+++.+-...+-.|.... + +..+++. +...
T Consensus 84 ~~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~ 162 (568)
T PRK07449 84 VANLYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTL 162 (568)
T ss_pred HHhhhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 87776654 446668999999875433311112335666666777765544455555511 1 2223343 3223
Q ss_pred CCCcEEEEecCC
Q 009809 350 DDRPSCFRYPRG 361 (525)
Q Consensus 350 ~~~Pv~i~~~~~ 361 (525)
..+||+|-++..
T Consensus 163 ~~GPV~i~iP~D 174 (568)
T PRK07449 163 QAGPVHINCPFR 174 (568)
T ss_pred CCCCEEEeCCCC
Confidence 468999988864
No 240
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.31 E-value=2 Score=43.25 Aligned_cols=103 Identities=8% Similarity=0.032 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcC------CCeEEEeec--hhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC---CCC-------CC-----
Q 009809 254 HAVTFAAGLACE------GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL---VGA-------DG----- 310 (525)
Q Consensus 254 ~~~~~a~G~A~~------G~~pi~~t~--~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~---~g~-------~G----- 310 (525)
+..++|.|++++ +-..++.+. +.+..-.++. ++.++..+.||++++-+-.. +|. .|
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~-l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQA-LSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHH-HHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344445555554 334566454 3444545544 57788899998887733221 211 11
Q ss_pred ----CC--CcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 311 ----PT--HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 311 ----~t--H~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
.. .-....+..-..++-+....|.++.++...+++|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 112233333344566778899999999999999975 688988743
No 241
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=91.18 E-value=2.2 Score=39.39 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=64.1
Q ss_pred hCCCCee-eccchHH-HHHHHHHHHhcCCCeEEEeec--hhhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCCCCCCCCC-
Q 009809 240 RFPTRCF-DVGIAEQ-HAVTFAAGLACEGLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTH- 313 (525)
Q Consensus 240 ~~p~r~~-~~gIaE~-~~~~~a~G~A~~G~~pi~~t~--~~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~g~~G~tH- 313 (525)
..|.+++ +.|..-. ..++.+.|++++--++++++. +.|++-..| +..+...++|++++. .+.++.-.....|
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~e--L~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNG--LLLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHH--HHhccccCCCeEEEEEECCCCchheeccCC
Confidence 3467777 5554322 355677777775456666664 455544423 345666789977665 4444210000001
Q ss_pred -------------cchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEE
Q 009809 314 -------------CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 357 (525)
Q Consensus 314 -------------~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~ 357 (525)
+..+-..+.+. -|+.-+.-.++.|+...+++++. .++|.+|-
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~lIe 171 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKA-YGLEYRRVSSLDELEQALESALA-QDGPHVIE 171 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHH-cCCCeeeCCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 01111122232 25566777899999999999975 57898764
No 242
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.14 E-value=4.5 Score=44.85 Aligned_cols=150 Identities=17% Similarity=0.052 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCC-----CCeeeccchHHHHHHHHHHHhcC-CCeEE-Eeechh
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-----TRCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSS 276 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p-----~r~~~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~~ 276 (525)
.++.|.+.+++..==.+++- .|...+ +.+.+... =|++.+ -.|+++..+|-|.|.. |...+ +.|.++
T Consensus 9 ~a~~l~~~L~~~GV~~iFgv--pG~~~~~l~dal~~~~~~g~~~i~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 9 AAELFLELLKELGVDYIFIN--SGTDYPPIIEAKARARAAGRPLPEFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred HHHHHHHHHHHCCCCEEEEc--CCCCcHHHHHHHHhhhhcCCCCCcEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 35667777766642233331 122222 33332111 277777 8899999999999996 54333 334888
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCC------CCCcc-hhhhhhhhcCCCcEEEccCCHHHHHHHHHHHH
Q 009809 277 FMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG------PTHCG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAA 347 (525)
Q Consensus 277 F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G------~tH~~-~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~ 347 (525)
.+..++--+ ..+...+.||+++...... .+.++ ..+|. .....+++.+-.+ .+...++.++...+..|+
T Consensus 86 G~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~ 163 (569)
T PRK08327 86 GTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAI 163 (569)
T ss_pred HHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHH
Confidence 887776554 3455678999988754332 11110 12344 3455666754433 557778888888888876
Q ss_pred hc----CCCcEEEEecCC
Q 009809 348 AI----DDRPSCFRYPRG 361 (525)
Q Consensus 348 ~~----~~~Pv~i~~~~~ 361 (525)
.. ..+||+|.++..
T Consensus 164 ~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 164 QIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred HHHhcCCCCCEEEECcHH
Confidence 53 357999988753
No 243
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=91.06 E-value=3.7 Score=45.13 Aligned_cols=149 Identities=17% Similarity=0.086 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCC-CCeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQR 280 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p-~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~ 280 (525)
+++.|.+.+++..--.+++ +.|...+ +.+. +.+ =|++.+ -.|+++..+|.|.|.. |...++. |+++....
T Consensus 2 ~~~~l~~~L~~~Gv~~vFG--vpG~~~~~l~~al~-~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n 77 (535)
T TIGR03394 2 LAEALLRALKDRGAQEMFG--IPGDFALPFFKVIE-ETGILPLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFN 77 (535)
T ss_pred HHHHHHHHHHHcCCCEEEE--CCCcccHHHHHHHh-hCCCCeEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHh
Confidence 4566777777665334444 2233332 2332 233 267765 8999999999999996 6555444 47888877
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCC-Ccc--hh-hhhhhhcCCCcEEEccCCHHHHHH----HHHHHHhcC
Q 009809 281 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--SF-DVTFMACLPNMVVMAPSDEAELFH----MVATAAAID 350 (525)
Q Consensus 281 a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~t-H~~--~~-d~~~~~~ipg~~v~~P~~~~e~~~----~~~~a~~~~ 350 (525)
++.-+ ..+...++||+++...... .+.+... ||. .. ...+++.+-.+ .....++.++.. +++.|+. .
T Consensus 78 ~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~~~~~~~~A~~~a~~-~ 154 (535)
T TIGR03394 78 MVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCD-QAVLDDPATAPAEIARVLGSARE-L 154 (535)
T ss_pred hhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEE-EEEeCChHHhHHHHHHHHHHHHH-C
Confidence 76553 3455678999998744332 1222223 443 22 23566654332 223344444444 4444443 4
Q ss_pred CCcEEEEecCCC
Q 009809 351 DRPSCFRYPRGN 362 (525)
Q Consensus 351 ~~Pv~i~~~~~~ 362 (525)
.+||||-++...
T Consensus 155 ~gPv~i~iP~Dv 166 (535)
T TIGR03394 155 SRPVYLEIPRDM 166 (535)
T ss_pred CCCEEEEechhh
Confidence 689999888753
No 244
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=91.04 E-value=1.9 Score=40.24 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=65.2
Q ss_pred hCCCCeeeccc-hH-HHHHHHHHHHhcCC-CeEEEee--chhhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCC-------
Q 009809 240 RFPTRCFDVGI-AE-QHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV------- 306 (525)
Q Consensus 240 ~~p~r~~~~gI-aE-~~~~~~a~G~A~~G-~~pi~~t--~~~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~------- 306 (525)
..|.+|+..+- .= -..++.|.|++++. -+++++. -+.|+....| +..+...++|++++. .+.++.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e--L~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE--LATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH--HHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 35778886432 11 12455777777763 3455555 4556644433 455677889987766 444431
Q ss_pred ---CC-CCCCCc-chhhh-hhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 307 ---GA-DGPTHC-GSFDV-TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 307 ---g~-~G~tH~-~~~d~-~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+. ....+. ...|+ .+.+.+ |+.-+.-.++.|+...+++++. .++|+++-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 000111 11222 233332 5666677889999999999975 578988744
No 245
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=91.03 E-value=6 Score=39.56 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhC-CCCee-eccchHHHHHHHHHHHhcC-CCeEEEeec--hhhHH
Q 009809 205 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF-PTRCF-DVGIAEQHAVTFAAGLACE-GLKPFCAIY--SSFMQ 279 (525)
Q Consensus 205 ~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~-p~r~~-~~gIaE~~~~~~a~G~A~~-G~~pi~~t~--~~F~~ 279 (525)
+.+.++|.+..-..++.+ +..|+|.+... ..-+ ++++. -.| .++.+|.|++++ --++++++. ++|+.
T Consensus 29 ~~v~~al~e~~~~~~d~i-vvsdiGc~~~~---~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~GDG~f~~ 100 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVC-VVSGIGCSGRF---SSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVSGDGDGLA 100 (277)
T ss_pred HHHHHHHHHhcCCCCCEE-EEeCcCHHHHh---hccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEECchHHHH
Confidence 445567766643334554 44677754211 1112 33443 333 567778888876 235566654 45543
Q ss_pred HHHHHHHHHhhcCCCCeEEEEc-CCCCCCCCCCCC--------------c----chhhhhhhhcCCCcEE---EccCCHH
Q 009809 280 RAYDQVVHDVDLQKLPVRFAMD-RAGLVGADGPTH--------------C----GSFDVTFMACLPNMVV---MAPSDEA 337 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~~-~~G~~g~~G~tH--------------~----~~~d~~~~~~ipg~~v---~~P~~~~ 337 (525)
+-.+-...++..++|++++.- +.++ |.-+.+. . ...|+.-+..--|..- ....++.
T Consensus 101 -~g~~el~ta~r~nlpi~iIV~NN~~y-Gmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~ 178 (277)
T PRK09628 101 -IGGNHTIHGCRRNIDLNFILINNFIY-GLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQ 178 (277)
T ss_pred -hhHHHHHHHHHhCcCeEEEEEEChHH-hcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHH
Confidence 223334457778999887763 3332 1111000 0 0012111111124432 5789999
Q ss_pred HHHHHHHHHHhcCCCcEEEEe
Q 009809 338 ELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 338 e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
|+..+++.|+. .++|++|-.
T Consensus 179 el~~al~~Al~-~~Gp~lIeV 198 (277)
T PRK09628 179 KLEKLLVKGFS-HKGFSFFDV 198 (277)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999986 688988744
No 246
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=91.00 E-value=3.3 Score=38.47 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcc-hHHHHHhCCCCeeeccchHHHHHH----HHHHHhcCCCeEEEeech--hh
Q 009809 205 TYFAEALIAEAEVDKDVVAIHAAMGGGTG-LNLFLRRFPTRCFDVGIAEQHAVT----FAAGLACEGLKPFCAIYS--SF 277 (525)
Q Consensus 205 ~a~~~~l~~~~~~d~~~v~~~~D~~~s~~-l~~~~~~~p~r~~~~gIaE~~~~~----~a~G~A~~G~~pi~~t~~--~F 277 (525)
+++.+.|.+.+. +.+++ .|.|.... +..+ ...|.+++. .+.+| .|.|++++..++++++.+ .|
T Consensus 2 ~~~~~~l~~~~~---~~~vv-~d~G~~~~~~~~~-~~~~~~~~~-----~g~mG~~lp~AiGaala~~~~vv~i~GDG~f 71 (179)
T cd03372 2 RDAIKTLIADLK---DELVV-SNIGFPSKELYAA-GDRPLNFYM-----LGSMGLASSIGLGLALAQPRKVIVIDGDGSL 71 (179)
T ss_pred HHHHHHHHHhCC---CCeEE-eCCCHhHHHHHHc-cCccccccc-----ccchhhHHHHHHHHHhcCCCcEEEEECCcHH
Confidence 345566666664 33333 45554321 1111 134667664 34444 677777664477777754 44
Q ss_pred HHHHHHHHHHHhhcCC-CCeEEE-EcCCCCCCCCCCCCcc---hhhh-hhhhcCCCcEEEccC-CHHHHHHHHHHHHhcC
Q 009809 278 MQRAYDQVVHDVDLQK-LPVRFA-MDRAGLVGADGPTHCG---SFDV-TFMACLPNMVVMAPS-DEAELFHMVATAAAID 350 (525)
Q Consensus 278 ~~~a~dqi~~~~~~~~-~pvvi~-~~~~G~~g~~G~tH~~---~~d~-~~~~~ipg~~v~~P~-~~~e~~~~~~~a~~~~ 350 (525)
+... .. +..+...+ .|++++ ..+.++. ..+.++.. .-|. .+.+. -|+..+... +++|+...+.+++
T Consensus 72 ~m~~-~e-l~ta~~~~~~~l~vvV~NN~~~~-~~~~~~~~~~~~~d~~~lA~a-~G~~~~~v~~~~~el~~al~~a~--- 144 (179)
T cd03372 72 LMNL-GA-LATIAAEKPKNLIIVVLDNGAYG-STGNQPTHAGKKTDLEAVAKA-CGLDNVATVASEEAFEKAVEQAL--- 144 (179)
T ss_pred HhCH-HH-HHHHHHcCCCCEEEEEEcCcccc-ccCCCCCCCCCCCCHHHHHHH-cCCCeEEecCCHHHHHHHHHHhc---
Confidence 3222 12 34445555 455555 4555531 11211111 1121 23333 245555556 9999999999885
Q ss_pred CCcEEEEe
Q 009809 351 DRPSCFRY 358 (525)
Q Consensus 351 ~~Pv~i~~ 358 (525)
++|.++-.
T Consensus 145 ~gp~lIev 152 (179)
T cd03372 145 DGPSFIHV 152 (179)
T ss_pred CCCEEEEE
Confidence 67987644
No 247
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=90.64 E-value=2.2 Score=39.69 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHH-HhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeec--hhhHHHH
Q 009809 205 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFL-RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY--SSFMQRA 281 (525)
Q Consensus 205 ~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~-~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~--~~F~~~a 281 (525)
+++-++|.+.+. ..+++ .|.|... ...+. ...|.+++..|--=. .++.|.|++++--++++++. +.|+.-+
T Consensus 2 ~~~~~~l~~~l~--d~iiv--~d~G~~~-~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVV--SNIGVPS-KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEE--ecCCHhH-HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 455566766663 33333 3555332 11222 235778876331111 23467777765456666664 4555333
Q ss_pred HHHHHHHhhcCC-CCeEEEE-cCCCCCCCCCC--CCc-chhhh-hhhhcCCCcEEEc-cCCHHHHHHHHHHHHhcCCCcE
Q 009809 282 YDQVVHDVDLQK-LPVRFAM-DRAGLVGADGP--THC-GSFDV-TFMACLPNMVVMA-PSDEAELFHMVATAAAIDDRPS 354 (525)
Q Consensus 282 ~dqi~~~~~~~~-~pvvi~~-~~~G~~g~~G~--tH~-~~~d~-~~~~~ipg~~v~~-P~~~~e~~~~~~~a~~~~~~Pv 354 (525)
|-+..++..+ +|++++. .+.|+ |..+. +.. ..-|+ .+.+. -|+.-.. ..+++|+...++ ++. .++|.
T Consensus 76 --~el~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a-~G~~~~~~v~~~~~l~~al~-a~~-~~~p~ 149 (181)
T TIGR03846 76 --GVLPTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKA-AGIRNVEKVADEEELRDALK-ALA-MKGPT 149 (181)
T ss_pred --hHHHHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHH-CCCCeEEEeCCHHHHHHHHH-HHc-CCCCE
Confidence 2234455566 5877766 44443 11111 111 01122 23333 2454444 688999999997 754 57898
Q ss_pred EEEe
Q 009809 355 CFRY 358 (525)
Q Consensus 355 ~i~~ 358 (525)
++-.
T Consensus 150 li~v 153 (181)
T TIGR03846 150 FIHV 153 (181)
T ss_pred EEEE
Confidence 8744
No 248
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=90.33 E-value=8 Score=37.68 Aligned_cols=116 Identities=12% Similarity=0.140 Sum_probs=61.5
Q ss_pred CCCCeeeccchHHHHHHHHH----HHhcC------CCeEEEeechh--hHHHHHHHHHHHhhcCCCCeEEEE-cCCCCCC
Q 009809 241 FPTRCFDVGIAEQHAVTFAA----GLACE------GLKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVG 307 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~----G~A~~------G~~pi~~t~~~--F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~g 307 (525)
+|.++++..+.-...+|.+. |++++ --++++++.++ |++..+-.+ ..+...++|++++. ++.++ |
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l-~ta~~~~l~i~ivVlNN~~y-g 128 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGAL-SHSLFRGEDITVIVLDNEVY-S 128 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHH-HHHHHcCCCeEEEEECCccc-c
Confidence 45566666554456666544 44433 13567777544 332233332 33445789987776 34432 1
Q ss_pred CCCCCCcc------------------hhhh-hhhhc--CCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 308 ADGPTHCG------------------SFDV-TFMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 308 ~~G~tH~~------------------~~d~-~~~~~--ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
.-+.+++. .-|+ .+.+. ++......+.++.|+..++++++.+.++|.+|-.
T Consensus 129 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 129 NTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111110 0122 22222 3333344599999999999999753578987743
No 249
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=89.57 E-value=1.5 Score=51.99 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=35.9
Q ss_pred cccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCC
Q 009809 4 GRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ 51 (525)
Q Consensus 4 a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~ 51 (525)
+.+.-..+.++++++|||.+-..=.. +|..|...+-|++++|-+|+.
T Consensus 479 G~a~~~~~~~v~a~iGDgTf~HSG~~-al~~AV~~~~nit~~IL~N~~ 525 (1159)
T PRK13030 479 GHAPFTETKHVFQNLGDGTYFHSGSL-AIRQAVAAGANITYKILYNDA 525 (1159)
T ss_pred eeccccCCCCEEEEeccchhhhcCHH-HHHHHHhcCCCeEEEEEeCCc
Confidence 33333455789999999999755333 688888889999999999973
No 250
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=89.50 E-value=5.6 Score=39.98 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeecc-c--hHHHHHHHHHHHhcCC-CeEEEeechhh-
Q 009809 203 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVG-I--AEQHAVTFAAGLACEG-LKPFCAIYSSF- 277 (525)
Q Consensus 203 ~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~g-I--aE~~~~~~a~G~A~~G-~~pi~~t~~~F- 277 (525)
...++.++|.++....++.++ ..|+|.+..+ | +|++++ + .=..++.+|.|++++. -++++++.+++
T Consensus 28 il~~l~~al~~l~~~p~d~vv-vsdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAV-VSGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEE-EeCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 456666777666544445544 4677765422 1 344432 1 1123445677777763 35566664433
Q ss_pred -HHHHHHHHHHHhhcCCCCeEEEE-cCCCC--CC-CCCC----------CCcch----hh-hhhhhcCCC--cEEEccCC
Q 009809 278 -MQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGP----------THCGS----FD-VTFMACLPN--MVVMAPSD 335 (525)
Q Consensus 278 -~~~a~dqi~~~~~~~~~pvvi~~-~~~G~--~g-~~G~----------tH~~~----~d-~~~~~~ipg--~~v~~P~~ 335 (525)
++..... +..++..++|++++. .+.++ ++ ...+ +.... .| ..+...... +......+
T Consensus 99 ~f~mg~~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 3333333 345667899977766 33332 21 1111 00000 11 122223222 22335789
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEe
Q 009809 336 EAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 336 ~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
++|+..+++.|+. .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999975 578987643
No 251
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=88.94 E-value=1.9 Score=51.13 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=33.6
Q ss_pred cCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCC
Q 009809 8 KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50 (525)
Q Consensus 8 ~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~ 50 (525)
-..+.++++++|||.+-.. -.-+|..|...+.|++++|-+|+
T Consensus 496 f~~~~hv~a~iGDgTffHS-G~~al~~AV~~~~nit~~IL~N~ 537 (1165)
T PRK09193 496 FTDEKHVFQNLGDGTYFHS-GLLAIRAAVAAGVNITYKILYND 537 (1165)
T ss_pred ccCCCcEEEEeccccchhc-CHHHHHHHHhcCCCeEEEEEeCC
Confidence 3445789999999999654 34457778888999999999997
No 252
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=88.94 E-value=2.4 Score=45.15 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCC--CEEEEecCCCCCcchH--HHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCeEEEeechhhHHH
Q 009809 207 FAEALIAEAEVDK--DVVAIHAAMGGGTGLN--LFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQR 280 (525)
Q Consensus 207 ~~~~l~~~~~~d~--~~v~~~~D~~~s~~l~--~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~ 280 (525)
+++.|.+.+.+-. .++.+..| ++|. ++..+.|+ |++.+ -+|-++.-.|-|.|.. |.-.++.||+.+-+-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGD----FNL~LLD~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGD----FNLSLLDKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVTTFGVGELS 80 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCc----ccHHHHHHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEEEeccchhh
Confidence 5666666665432 45554444 5553 34445555 44443 5899999999999995 888899999998777
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchh--hhh-hhhcCCCc--EEEccCCHHHHHHHHHHHHh---cC
Q 009809 281 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSF--DVT-FMACLPNM--VVMAPSDEAELFHMVATAAA---ID 350 (525)
Q Consensus 281 a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~--d~~-~~~~ipg~--~v~~P~~~~e~~~~~~~a~~---~~ 350 (525)
+++-|-..-+ .++||+.+...+.. .+.+-.-||... |.. ++|...++ .+..=.|.+++.+.+..|+. ..
T Consensus 81 AlNGIAGsYA-E~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~ 159 (561)
T KOG1184|consen 81 ALNGIAGAYA-ENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKE 159 (561)
T ss_pred hhcccchhhh-hcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHh
Confidence 7655433222 58999998754442 223333455332 221 22222222 12333455555555544433 36
Q ss_pred CCcEEEEecCCC
Q 009809 351 DRPSCFRYPRGN 362 (525)
Q Consensus 351 ~~Pv~i~~~~~~ 362 (525)
.+||||-++...
T Consensus 160 ~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 160 SKPVYIGVPANL 171 (561)
T ss_pred cCCeEEEeeccc
Confidence 789999887653
No 253
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=88.70 E-value=2.1 Score=40.32 Aligned_cols=145 Identities=10% Similarity=0.068 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch--HHHHHhCCCCeeeccc-hH-HHHHHHHHHHhcCC-CeEEEeec--hhhHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL--NLFLRRFPTRCFDVGI-AE-QHAVTFAAGLACEG-LKPFCAIY--SSFMQ 279 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l--~~~~~~~p~r~~~~gI-aE-~~~~~~a~G~A~~G-~~pi~~t~--~~F~~ 279 (525)
+-+.|.+.+.+ +.+ +..|.|..... ..+.-..|.+|+..+- .= -..+..|.|++++. -++++++. +.|++
T Consensus 9 ~~~~l~~~l~~--~~i-vv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m 85 (196)
T cd02013 9 VLRELEKAMPE--DAI-VSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGM 85 (196)
T ss_pred HHHHHHHHCCC--CEE-EEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc
Confidence 44555665542 333 34454432211 1222344778885421 11 22455777877753 45666664 55655
Q ss_pred HHHHHHHHHhhcCCCCeEEEE-cCCCCC--CC-----CC-----CCCcchhhh-hhhhcCCCcEEEccCCHHHHHHHHHH
Q 009809 280 RAYDQVVHDVDLQKLPVRFAM-DRAGLV--GA-----DG-----PTHCGSFDV-TFMACLPNMVVMAPSDEAELFHMVAT 345 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~-~~~G~~--g~-----~G-----~tH~~~~d~-~~~~~ipg~~v~~P~~~~e~~~~~~~ 345 (525)
...| +..+...++|++++. .+.|+. .. .+ ..+.. -|+ .+.+. -|+.-+.-.++.|+...+++
T Consensus 86 ~~~e--L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~-~d~~~lA~a-~G~~~~~v~~~~el~~al~~ 161 (196)
T cd02013 86 SMME--IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELES-ESFAKIAEA-CGAKGITVDKPEDVGPALQK 161 (196)
T ss_pred cHHH--HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCC-CCHHHHHHH-CCCEEEEECCHHHHHHHHHH
Confidence 4433 344666789987776 555541 00 01 01111 122 22233 35666778889999999999
Q ss_pred HHh--cCCCcEEEEe
Q 009809 346 AAA--IDDRPSCFRY 358 (525)
Q Consensus 346 a~~--~~~~Pv~i~~ 358 (525)
++. +.++|+++-.
T Consensus 162 a~~~~~~~~p~liev 176 (196)
T cd02013 162 AIAMMAEGKTTVIEI 176 (196)
T ss_pred HHhcCCCCCeEEEEE
Confidence 975 1478987744
No 254
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=88.69 E-value=1.7 Score=41.28 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=63.6
Q ss_pred hCCCCeeeccchHHHHHH----HHHHHhcCC-CeEEEeec--hhhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCC-----
Q 009809 240 RFPTRCFDVGIAEQHAVT----FAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV----- 306 (525)
Q Consensus 240 ~~p~r~~~~gIaE~~~~~----~a~G~A~~G-~~pi~~t~--~~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~----- 306 (525)
..|.+|+..+ -.+.|| .|.|++++. -++++++. +.|+... |-+..+...++|++++. .+.|+.
T Consensus 36 ~~~~~~~~~~--~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEY--GYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCC--CcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHH
Confidence 4578888642 234445 566666653 35566654 5555433 22445667899976665 455431
Q ss_pred ----CC--CCCCCc-------------chhhh-hhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 307 ----GA--DGPTHC-------------GSFDV-TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 307 ----g~--~G~tH~-------------~~~d~-~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+. .+..+. ...|+ .+.+. -|+..+.-.++.|+...+++++. .++|+++-.
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a-~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARS-LGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCCCCHHHHHHh-CCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 000000 01122 23333 26667777899999999999975 578987643
No 255
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.37 E-value=11 Score=38.03 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcC----CC-eEEEeec--hhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC---CCCC-CC----------C
Q 009809 254 HAVTFAAGLACE----GL-KPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL---VGAD-GP----------T 312 (525)
Q Consensus 254 ~~~~~a~G~A~~----G~-~pi~~t~--~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~---~g~~-G~----------t 312 (525)
++.++|.|++.+ +. ++++++. +.+..-.+..+ ..+.+.+.+++++.-+-+. +|.. .+ +
T Consensus 73 ~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L-~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~ts 151 (299)
T PRK11865 73 NAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSL-SGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTS 151 (299)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHH-HHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccC
Confidence 455566666554 43 3455554 45566666554 4566678888776633222 2210 00 0
Q ss_pred ------------CcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 313 ------------HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 313 ------------H~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
.-....++.-...+-+....|.++.|+...++.|++ .++|.+|..
T Consensus 152 p~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 152 PAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111233333345555778899999999999999975 688988753
No 256
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=87.76 E-value=2.8 Score=43.22 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=66.7
Q ss_pred ccchHHHHHHHHHHHhcCC-Ce-EEEeechhhH--HHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCC-cchhhh--
Q 009809 248 VGIAEQHAVTFAAGLACEG-LK-PFCAIYSSFM--QRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH-CGSFDV-- 319 (525)
Q Consensus 248 ~gIaE~~~~~~a~G~A~~G-~~-pi~~t~~~F~--~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH-~~~~d~-- 319 (525)
+|-.=..++|+|.++-+.| .. ..+++|++.. +--+-.-+|.++.+++|||+++-+-+. -+ -+.. |...++
T Consensus 138 Vg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS--vp~~~q~~~~~~~ 215 (358)
T COG1071 138 VGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS--VPRSRQTAAEIIA 215 (358)
T ss_pred ecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee--cchhhcccchhHH
Confidence 3333345666666666667 33 4444566653 222222268899999999999966554 12 1222 332221
Q ss_pred --hhhhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEE
Q 009809 320 --TFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFR 357 (525)
Q Consensus 320 --~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~ 357 (525)
+.--.|||+.| .=.|+..++..+++|+++ .++|++|-
T Consensus 216 ~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE 257 (358)
T COG1071 216 ARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIE 257 (358)
T ss_pred hhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 23336899988 999999999999988764 45798863
No 257
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=87.26 E-value=13 Score=34.99 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHH----HHHHHhcC-CCeEEEeec--h
Q 009809 203 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVT----FAAGLACE-GLKPFCAIY--S 275 (525)
Q Consensus 203 ~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~----~a~G~A~~-G~~pi~~t~--~ 275 (525)
..+++.+++.++....++.+ +..|.|... + . .++++.+-. .+.+| .|.|++++ .-|+++.+. +
T Consensus 10 ~~~~~~~~~~~~~~~~~d~i-i~~D~G~~~-~---~----~~~~~~~~~-~g~mG~glpaAiGa~la~p~r~Vv~i~GDG 79 (193)
T cd03375 10 ILKALAKALAELGIDPEKVV-VVSGIGCSS-R---L----PYYFNTYGF-HTLHGRALAVATGVKLANPDLTVIVVSGDG 79 (193)
T ss_pred HHHHHHHHHHHhCCCCCCEE-EEeCCChhc-e---e----hhhccccch-hhhhccHHHHHHHHHHhCCCCeEEEEeccc
Confidence 34566677755443344444 446777432 1 1 122222100 13333 67777775 345666664 4
Q ss_pred hhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCCCCCCCC----------Cc---c----hhhh-hhhhcC--CCcEEEccC
Q 009809 276 SFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPT----------HC---G----SFDV-TFMACL--PNMVVMAPS 334 (525)
Q Consensus 276 ~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~g~~G~t----------H~---~----~~d~-~~~~~i--pg~~v~~P~ 334 (525)
.|++..... +..+...++|++++. ++.++....+.. +. . .-|+ .+.+.+ ++.......
T Consensus 80 s~f~m~~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~ 158 (193)
T cd03375 80 DLAAIGGNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSG 158 (193)
T ss_pred hHhhccHHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecC
Confidence 432222222 344566789988666 444431111100 00 0 0121 222222 222224689
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 335 DEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 335 ~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
++.|+...+++++. .++|.+|-.
T Consensus 159 ~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 159 DIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEE
Confidence 99999999999975 688987643
No 258
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=86.96 E-value=16 Score=34.21 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=58.2
Q ss_pred CCCeeeccchHHHHHHHHHHHhcCC-CeEEEeec--hhhHHHHHHHHHHHhhcCCC-CeEEE-EcCCCCCCCCC-CCCcc
Q 009809 242 PTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKL-PVRFA-MDRAGLVGADG-PTHCG 315 (525)
Q Consensus 242 p~r~~~~gIaE~~~~~~a~G~A~~G-~~pi~~t~--~~F~~~a~dqi~~~~~~~~~-pvvi~-~~~~G~~g~~G-~tH~~ 315 (525)
|.+|+..|--= ..++.|.|++++. -++++++. +.|++-.-+ +..++..++ |++++ ..+.|+....+ .+...
T Consensus 41 ~~~~~~~g~mG-~~lpaAiGaala~p~~~Vv~i~GDG~f~m~~~e--L~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~ 117 (188)
T cd03371 41 AQDFLTVGSMG-HASQIALGIALARPDRKVVCIDGDGAALMHMGG--LATIGGLAPANLIHIVLNNGAHDSVGGQPTVSF 117 (188)
T ss_pred cCceeecCccc-cHHHHHHHHHHhCCCCcEEEEeCCcHHHhhccH--HHHHHHcCCCCcEEEEEeCchhhccCCcCCCCC
Confidence 47888652211 1345677777653 35566654 455433212 344555665 55444 45555311101 11111
Q ss_pred hhhh-hhhhcCCCcE-EEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 316 SFDV-TFMACLPNMV-VMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 316 ~~d~-~~~~~ipg~~-v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
.-|. .+.+.+ |+. .....++.|+..++.+++. .++|+++..
T Consensus 118 ~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 118 DVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1122 233332 454 3456799999999999975 578988754
No 259
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=86.92 E-value=3.3 Score=49.18 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCC
Q 009809 9 GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50 (525)
Q Consensus 9 ~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~ 50 (525)
..+.+++.++|||.+... -.-+|..|...+.|++++|-+|+
T Consensus 511 ~~~~hv~aniGDgTffHS-G~~alr~AV~~~~nit~kIL~N~ 551 (1186)
T PRK13029 511 SRRRHVFQNLGDGTYFHS-GLLAIRQAIAAGVNITYKILYND 551 (1186)
T ss_pred CCCCCEEEEeccccchhc-CHHHHHHHHhcCCCEEEEEEeCc
Confidence 445789999999999755 34457788888999999999997
No 260
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=86.86 E-value=2.5 Score=39.96 Aligned_cols=147 Identities=15% Similarity=0.060 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch--HHHHHhCCCCeeeccc-hHHH-HHHHHHHHhcC-CCeEEEeec--hhhHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL--NLFLRRFPTRCFDVGI-AEQH-AVTFAAGLACE-GLKPFCAIY--SSFMQ 279 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l--~~~~~~~p~r~~~~gI-aE~~-~~~~a~G~A~~-G~~pi~~t~--~~F~~ 279 (525)
+-+.|.+.+..| .+++ .|.+..... ..+.-..|.+|++.+- .=.. .++.|.|++++ .-++++++. +.|++
T Consensus 13 ~~~~l~~~l~~d--~iiv-~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m 89 (202)
T cd02006 13 VYEEMNKAFGRD--VRYV-TTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQF 89 (202)
T ss_pred HHHHHHhhCCCC--eEEE-ECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhc
Confidence 445555555433 3333 454432211 2233345778887642 2111 44467777765 346666664 56655
Q ss_pred HHHHHHHHHhhcCCCCeEEEE-cCCCCCC-C------CC-----CCCcc---------hhhhhhhhcCCCcEEEccCCHH
Q 009809 280 RAYDQVVHDVDLQKLPVRFAM-DRAGLVG-A------DG-----PTHCG---------SFDVTFMACLPNMVVMAPSDEA 337 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~-~~~G~~g-~------~G-----~tH~~---------~~d~~~~~~ipg~~v~~P~~~~ 337 (525)
.+.| +..+...++|++++. .+.|+.. . .+ ..+.. .-|..-+..--|+.-+.-.++.
T Consensus 90 ~~~e--L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 167 (202)
T cd02006 90 MIEE--LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPE 167 (202)
T ss_pred cHHH--HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHH
Confidence 5433 445677899977776 4444310 0 00 00110 0122222222266677889999
Q ss_pred HHHHHHHHHHh---cCCCcEEEEe
Q 009809 338 ELFHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 338 e~~~~~~~a~~---~~~~Pv~i~~ 358 (525)
|+...+++++. ..++|++|-.
T Consensus 168 el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 168 ELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEE
Confidence 99999999974 2578987744
No 261
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=86.41 E-value=8.4 Score=48.25 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCC-CCeeeccchHHHHHHHHHHHhcCCCeEEE--eechhhH
Q 009809 205 TYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFC--AIYSSFM 278 (525)
Q Consensus 205 ~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p-~r~~~~gIaE~~~~~~a~G~A~~G~~pi~--~t~~~F~ 278 (525)
..+++.|.+.+++..=-.+++-. |+..+ +.+. +.+ =|++.+ ..|+++.-+|.|.|..-.+|-+ +|+++..
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~P--G~~~~pL~dAl~-~~~~i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~ 376 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAP--GSRSSPLAIAAS-NHPLTTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAV 376 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC--CCCCHHHHHHHH-hCCCCeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 44566777777665422223322 33222 2332 223 356655 9999999999999997444433 4578887
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEE--ccCCH-------HHHHHHHHHHHhc
Q 009809 279 QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVM--APSDE-------AELFHMVATAAAI 349 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~--~P~~~-------~e~~~~~~~a~~~ 349 (525)
...+-.+ ..+...+.|++++.........+-..+|..+...+++.+--+..- .|.+. ..+..++..|..-
T Consensus 377 tN~l~av-~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~ 455 (1655)
T PLN02980 377 SNLLPAV-VEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSS 455 (1655)
T ss_pred HHHHHHH-HHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCC
Confidence 6666554 446668999999875544311112236666666778766654333 34441 2333444444322
Q ss_pred CCCcEEEEecC
Q 009809 350 DDRPSCFRYPR 360 (525)
Q Consensus 350 ~~~Pv~i~~~~ 360 (525)
..+||+|-++.
T Consensus 456 rpGPVhL~iP~ 466 (1655)
T PLN02980 456 PCGPVHINCPF 466 (1655)
T ss_pred CCCCEEEECcc
Confidence 35799998874
No 262
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=86.15 E-value=4.2 Score=43.54 Aligned_cols=148 Identities=15% Similarity=0.159 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcC--CCEEEEecCCCCCcchH--HHHHhCCC-CeeeccchHHHHHHHHHHHhc-CCCeEEEeechhhHHH
Q 009809 207 FAEALIAEAEVD--KDVVAIHAAMGGGTGLN--LFLRRFPT-RCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQR 280 (525)
Q Consensus 207 ~~~~l~~~~~~d--~~~v~~~~D~~~s~~l~--~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~-~G~~pi~~t~~~F~~~ 280 (525)
+++.|.+.+.+- ..++-+..| ++|. +....+|+ |++-+ -+|-++.-+|-|.|. .|.-.++.||+.+-+-
T Consensus 6 vG~YL~~RL~qlgi~~iFGVPGD----yNL~lLD~i~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELS 80 (557)
T COG3961 6 VGDYLFDRLAQLGIKSIFGVPGD----YNLSLLDKIYSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELS 80 (557)
T ss_pred HHHHHHHHHHhcCCceeeeCCCc----ccHHHHHHhhcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhh
Confidence 456666555543 345555545 4442 23334454 66655 689999999999998 5888999999998777
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhh--hhh-hhcCCCc----EEEccCC--HHHHHHHHHHHHhc
Q 009809 281 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD--VTF-MACLPNM----VVMAPSD--EAELFHMVATAAAI 349 (525)
Q Consensus 281 a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d--~~~-~~~ipg~----~v~~P~~--~~e~~~~~~~a~~~ 349 (525)
|++-|-..-+ .++||+.+...+.. ....-.-||...| ... +|.--.+ ..+.+.+ +.|...+++.++.
T Consensus 81 A~NGIAGSYA-E~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~- 158 (557)
T COG3961 81 ALNGIAGSYA-EHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK- 158 (557)
T ss_pred hhcccchhhh-hcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH-
Confidence 7655433222 58999988744332 2222344664333 112 2211121 2344554 8888889998865
Q ss_pred CCCcEEEEecCC
Q 009809 350 DDRPSCFRYPRG 361 (525)
Q Consensus 350 ~~~Pv~i~~~~~ 361 (525)
..+|+||-++..
T Consensus 159 ~~RPvYI~lP~d 170 (557)
T COG3961 159 QRRPVYIGLPAD 170 (557)
T ss_pred hcCCeEEEcchH
Confidence 689999988764
No 263
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=84.53 E-value=8.4 Score=37.90 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=59.3
Q ss_pred HHHHHHHHhcC------CCeEEEee-chhhHH-HHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc--chhhh-hhh
Q 009809 255 AVTFAAGLACE------GLKPFCAI-YSSFMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GSFDV-TFM 322 (525)
Q Consensus 255 ~~~~a~G~A~~------G~~pi~~t-~~~F~~-~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~--~~~d~-~~~ 322 (525)
.+++|.|+|++ ..+.++.+ -+.|.. ..++. ++.++..++| ++++.+..++ +..+.++. ...++ ..+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~ea-l~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEA-ASFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHH-HHHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHH
Confidence 34456666654 34444444 344442 34555 4567778887 6666666554 22333322 22232 344
Q ss_pred hcCCCcEEEccC--CHHHHHHHHHHHHhcCCCcEEEEec
Q 009809 323 ACLPNMVVMAPS--DEAELFHMVATAAAIDDRPSCFRYP 359 (525)
Q Consensus 323 ~~ipg~~v~~P~--~~~e~~~~~~~a~~~~~~Pv~i~~~ 359 (525)
+. -|+.++.-. |..++...+.++....++|++|...
T Consensus 188 ~a-~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EA-FGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HH-cCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 44 378777666 8999999999886533789877543
No 264
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=84.25 E-value=8 Score=36.45 Aligned_cols=97 Identities=9% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHHHHHHHhcC----C-CeEEEeechhhH-H--HHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCC
Q 009809 255 AVTFAAGLACE----G-LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLP 326 (525)
Q Consensus 255 ~~~~a~G~A~~----G-~~pi~~t~~~F~-~--~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ip 326 (525)
.+++|.|+|++ | -+.++++..+.- + ..+|. ++.++....|++++..+-++ +.++++. ...+ .++. .
T Consensus 80 gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Ea-l~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a-~ 153 (195)
T cd02007 80 SISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEA-LNNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE-L 153 (195)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHH-HHHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-c
Confidence 34455666553 3 244555554442 2 44455 45566668999998877664 2233332 2222 3343 3
Q ss_pred CcEE---EccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 327 NMVV---MAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 327 g~~v---~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
|+.+ +...|..++...++.+.+ .++|++|..
T Consensus 154 G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~ 187 (195)
T cd02007 154 GFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHV 187 (195)
T ss_pred CCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 4433 566788999999988854 578988754
No 265
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=82.79 E-value=4.4 Score=36.63 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCC-CeEEEee--chhhHHHHHHHHHHHhhcCCCCeEEEEc-CCCCC--CCC------C---CCCcchhhh
Q 009809 255 AVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLV--GAD------G---PTHCGSFDV 319 (525)
Q Consensus 255 ~~~~a~G~A~~G-~~pi~~t--~~~F~~~a~dqi~~~~~~~~~pvvi~~~-~~G~~--g~~------G---~tH~~~~d~ 319 (525)
.++.|.|++++. -++++++ -+.|+. .++. +..+...++|++++.. +.+.. +.. + .......|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~-l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQE-LATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHH-HHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 344677777764 2444444 355554 3333 4556677899777764 33321 100 0 011111122
Q ss_pred -hhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 320 -TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 320 -~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
.+.+. -|+......++.|+...++++. ..++|+++..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~-~~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEAL-AAGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHH-hCCCCEEEEE
Confidence 23333 3677777788999999999986 4678987643
No 266
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=82.59 E-value=7.8 Score=35.61 Aligned_cols=144 Identities=17% Similarity=0.106 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch-HHH-HHhCCCCeeeccchHH-HHHHHHHHHhcCC-CeEEEeec--hhhHHH
Q 009809 207 FAEALIAEAEVDKDVVAIHAAMGGGTGL-NLF-LRRFPTRCFDVGIAEQ-HAVTFAAGLACEG-LKPFCAIY--SSFMQR 280 (525)
Q Consensus 207 ~~~~l~~~~~~d~~~v~~~~D~~~s~~l-~~~-~~~~p~r~~~~gIaE~-~~~~~a~G~A~~G-~~pi~~t~--~~F~~~ 280 (525)
+-+.|.+.+.. +.++ ..|.+..... ..+ .-..|.+++..+-.=. ..+..|.|++++- -+++++.. +.|+.-
T Consensus 6 ~~~~l~~~l~~--~~~i-v~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~ 82 (178)
T cd02002 6 LAAALAAALPE--DAII-VDEAVTNGLPLRDQLPLTRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYT 82 (178)
T ss_pred HHHHHHhhCCC--CeEE-EecCCcccHHHHHhcccCCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhcc
Confidence 33445555543 3333 3565543221 122 2235778886533111 1344677777653 34455554 555533
Q ss_pred HHHHHHHHhhcCCCCeEEEE-cCCCCCC-C------CC----------C-CCcchhhh-hhhhcCCCcEEEccCCHHHHH
Q 009809 281 AYDQVVHDVDLQKLPVRFAM-DRAGLVG-A------DG----------P-THCGSFDV-TFMACLPNMVVMAPSDEAELF 340 (525)
Q Consensus 281 a~dqi~~~~~~~~~pvvi~~-~~~G~~g-~------~G----------~-tH~~~~d~-~~~~~ipg~~v~~P~~~~e~~ 340 (525)
.- . +..+...++|++++. ++.++.. . .+ . ......|+ .+.+.+ |+..+.-.++.|+.
T Consensus 83 ~~-e-l~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~ 159 (178)
T cd02002 83 IQ-A-LWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELD 159 (178)
T ss_pred HH-H-HHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHH
Confidence 32 2 445666789987776 4443310 0 00 0 00011222 223332 55666677899999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 009809 341 HMVATAAAIDDRPSCFR 357 (525)
Q Consensus 341 ~~~~~a~~~~~~Pv~i~ 357 (525)
..++++++ .++|.++-
T Consensus 160 ~al~~a~~-~~~p~vi~ 175 (178)
T cd02002 160 EALREALA-EGGPALIE 175 (178)
T ss_pred HHHHHHHh-CCCCEEEE
Confidence 99999975 57898764
No 267
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=82.05 E-value=19 Score=35.96 Aligned_cols=149 Identities=11% Similarity=0.072 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCC-CeEEEeech--hhH
Q 009809 202 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYS--SFM 278 (525)
Q Consensus 202 ~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G-~~pi~~t~~--~F~ 278 (525)
....++.+++.++.-..++.+ +..|.|.+..+..+.+ +..+.-+ =..++.+|.|++++. -++++++.+ .|+
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~i-vvsdiG~~~~~~~~~~--~~~~~~~---mG~alp~AiGaklA~pd~~VVai~GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVV-IVSGIGQAAKMPHYIN--VNGFHTL---HGRAIPAATAVKATNPELTVIAEGGDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEE-EEeCchHhhhHHHHcc--CCCCCcc---cccHHHHHHHHHHHCCCCcEEEEECchHHh
Confidence 456778888876643334544 4457665443322211 1111111 123556677777765 467777754 444
Q ss_pred HHHHHHHHHHhhcCCCCeEEEE-cCCCC--CC-CCCC-------C-------Ccchhhhhhhh---cCCCcEEEccCCHH
Q 009809 279 QRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGP-------T-------HCGSFDVTFMA---CLPNMVVMAPSDEA 337 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~pvvi~~-~~~G~--~g-~~G~-------t-------H~~~~d~~~~~---~ipg~~v~~P~~~~ 337 (525)
.-.+.. +..++..++|++++. ++.++ ++ ...+ + -...-|+..+. ..+.+....+.++.
T Consensus 92 ~iG~~e-L~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~ 170 (280)
T PRK11869 92 AEGGNH-LIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIE 170 (280)
T ss_pred hCcHHH-HHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHH
Confidence 433444 456777899987776 33332 21 0000 0 00011221111 22223333499999
Q ss_pred HHHHHHHHHHhcCCCcEEEEe
Q 009809 338 ELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 338 e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
|+...+++|+. .++|.+|-.
T Consensus 171 ~l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 171 ETKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999986 688987743
No 268
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=81.86 E-value=24 Score=38.82 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCeEEEe-echhhHHHH
Q 009809 208 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 281 (525)
Q Consensus 208 ~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~-t~~~F~~~a 281 (525)
++.|.+.+++..--.+++ +.|...+ +.+.+ .++ |++.+ -.|+++..+|.|.|.. | ++++. ++++.+..+
T Consensus 4 ~~~l~~~L~~~Gv~~vFG--~pG~~~~~l~dal~~-~~~i~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~ 78 (539)
T TIGR03393 4 GDYLLDRLTDIGIDHLFG--VPGDYNLQFLDHVID-SPDICWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELSA 78 (539)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCCchHHHHHHHhh-CCCCcEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHHH
Confidence 456666666554333343 2233332 23322 233 56666 8999999999999996 7 56554 578887666
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCC--CCCCC--------CCcchhhhhhhhcCCCcE-EEccCC-HHHHHHHHHHHHhc
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGLV--GADGP--------THCGSFDVTFMACLPNMV-VMAPSD-EAELFHMVATAAAI 349 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~~--g~~G~--------tH~~~~d~~~~~~ipg~~-v~~P~~-~~e~~~~~~~a~~~ 349 (525)
+--+. .+-..+.||+++....... +.+-. .+|.. ..+++.+--+. +..|.+ +..+..++..|+.
T Consensus 79 ~~gla-~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~- 154 (539)
T TIGR03393 79 INGIA-GSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVLTEQNATAEIDRVITTALR- 154 (539)
T ss_pred hhHHH-HHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEeChhhhHHHHHHHHHHHHh-
Confidence 65543 3555789999887433310 01001 12221 23444322111 225666 6788888888875
Q ss_pred CCCcEEEEecCCC
Q 009809 350 DDRPSCFRYPRGN 362 (525)
Q Consensus 350 ~~~Pv~i~~~~~~ 362 (525)
..+||+|-++...
T Consensus 155 ~~gPv~l~iP~Dv 167 (539)
T TIGR03393 155 ERRPGYLMLPVDV 167 (539)
T ss_pred cCCCEEEEecccc
Confidence 4689999888753
No 269
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=81.75 E-value=23 Score=35.90 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccch--H-HHHHHHHHHHhcCC-CeEEEeec--h
Q 009809 202 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIA--E-QHAVTFAAGLACEG-LKPFCAIY--S 275 (525)
Q Consensus 202 ~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIa--E-~~~~~~a~G~A~~G-~~pi~~t~--~ 275 (525)
....++.++|.++.-...++ ++..|+|.+... |. |+++.-- = ..++.+|.|++++. -++++++. +
T Consensus 28 ~i~~~i~~al~~l~l~p~d~-vivsdiG~s~~~-------~~-yl~~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG 98 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKV-VVVSGIGCSSKI-------PG-YFLSHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDG 98 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCE-EEEeCCcHhhhh-------hh-hcccCccchhhccHHHHHHHHHHHCCCCcEEEEeCcc
Confidence 34466667777663222344 445577754422 11 3332110 0 22455777777763 45666664 4
Q ss_pred hhHHHHHHHHHHHhhcCCCCeEEEE-cCCCC--CCC-CCCCC----------c----chhhhhhhhcCCCcEEE---ccC
Q 009809 276 SFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VGA-DGPTH----------C----GSFDVTFMACLPNMVVM---APS 334 (525)
Q Consensus 276 ~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~--~g~-~G~tH----------~----~~~d~~~~~~ipg~~v~---~P~ 334 (525)
+|+...... +..++..++|++++. ++.++ ++. ..++. . ...|+..+..--|...+ ...
T Consensus 99 ~~~~mg~~e-L~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~ 177 (301)
T PRK05778 99 DLASIGGGH-FIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAG 177 (301)
T ss_pred HHHhccHHH-HHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccC
Confidence 443333334 345667899977766 44433 211 00000 0 11122222221244433 688
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 335 DEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 335 ~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
++.|+..++++|+. .++|+++-.
T Consensus 178 ~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 178 DVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEE
Confidence 99999999999975 688987643
No 270
>PRK06154 hypothetical protein; Provisional
Probab=81.12 E-value=13 Score=41.14 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=72.2
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-C-CeEEE--eechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcch
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-G-LKPFC--AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS 316 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G-~~pi~--~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~ 316 (525)
=|++.+ ..|++++.+|.|.|.. | .+|-+ .|+++.+..++--+ ..+...+.||+++...... .+. ++.+++
T Consensus 55 i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~-~~~~d~- 130 (565)
T PRK06154 55 IRPVIA-RTERVAVHMADGYARATSGERVGVFAVQYGPGAENAFGGV-AQAYGDSVPVLFLPTGYPRGSTDV-APNFES- 130 (565)
T ss_pred CeEEee-CcHHHHHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccccC-CCCcch-
Confidence 366665 8999999999999985 3 34433 34788887776553 3455678999988643221 111 112222
Q ss_pred hhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 317 FDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 317 ~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
..+++.+-.+ .....++.++...+..|+.. ..+||||-++..
T Consensus 131 --~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 131 --LRNYRHITKW-CEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred --hhhHhhccee-EEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 3466654433 45667788887777777642 357999988764
No 271
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=80.72 E-value=16 Score=33.99 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=61.9
Q ss_pred CCCCeeeccc-h-HHHHHHHHHHHhcCC-CeEEEee--chhhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCC---C-C-C
Q 009809 241 FPTRCFDVGI-A-EQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV---G-A-D 309 (525)
Q Consensus 241 ~p~r~~~~gI-a-E~~~~~~a~G~A~~G-~~pi~~t--~~~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~---g-~-~ 309 (525)
.|.+++..+- . =-..++.|.|++++- -++++.+ -..|+.-..| +..+...++|++++. .+.|+. . . .
T Consensus 39 ~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e--l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~ 116 (183)
T cd02005 39 KGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE--LSTMIRYGLNPIIFLINNDGYTIERAIHGP 116 (183)
T ss_pred CCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH--HHHHHHhCCCCEEEEEECCCcEEEEEeccC
Confidence 3567776421 1 112344566766652 3455555 4566544434 234556678866665 444431 0 0 1
Q ss_pred CCCCcc--hhhh-hhhhcCC---CcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 310 GPTHCG--SFDV-TFMACLP---NMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 310 G~tH~~--~~d~-~~~~~ip---g~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+..+.. ..|. .+...+- ++..+...++.|+...+++++.+.++|+++-.
T Consensus 117 ~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 117 EASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred CcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 111111 1122 2333322 26677789999999999999763578987744
No 272
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=80.70 E-value=2.4 Score=38.02 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCCCeeec--cchHHHHHHHHHHHhcCC-CeEEEee--chhhHHHHHHHHHHHhhcCCCCeEEEE-cCCCC--CC----C
Q 009809 241 FPTRCFDV--GIAEQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG----A 308 (525)
Q Consensus 241 ~p~r~~~~--gIaE~~~~~~a~G~A~~G-~~pi~~t--~~~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~--~g----~ 308 (525)
.|.+|+.. .-+=...++.|.|++++. -++++++ -..|+.-..+ +..+...++|++++. .+.++ .+ .
T Consensus 17 ~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~e--l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~ 94 (153)
T PF02775_consen 17 RPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQE--LATAVRYGLPVVIVVLNNGGYGMTGGQQTP 94 (153)
T ss_dssp STTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGG--HHHHHHTTSSEEEEEEESSBSHHHHHHHHH
T ss_pred CCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccch--hHHHhhccceEEEEEEeCCcceEecccccc
Confidence 36777752 223335566777777762 3445554 4566544322 345666788977766 44443 11 0
Q ss_pred CCC-C--------CcchhhhhhhhcCCCcEEEc--cCCHHHHHHHHHHHHhcCCCcEEE
Q 009809 309 DGP-T--------HCGSFDVTFMACLPNMVVMA--PSDEAELFHMVATAAAIDDRPSCF 356 (525)
Q Consensus 309 ~G~-t--------H~~~~d~~~~~~ipg~~v~~--P~~~~e~~~~~~~a~~~~~~Pv~i 356 (525)
.+. . .....-..+.+. -|+..+. +.+++|+...+++++. .++|++|
T Consensus 95 ~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~~~el~~al~~a~~-~~gp~vI 151 (153)
T PF02775_consen 95 FGGGRFSGVDGKTFPNPDFAALAEA-FGIKGARVTTPDPEELEEALREALE-SGGPAVI 151 (153)
T ss_dssp TTSTCHHSTBTTTSTTCGHHHHHHH-TTSEEEEESCHSHHHHHHHHHHHHH-SSSEEEE
T ss_pred CcCcccccccccccccCCHHHHHHH-cCCcEEEEccCCHHHHHHHHHHHHh-CCCcEEE
Confidence 111 1 111222233344 3565555 4455999999999984 6889876
No 273
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=79.34 E-value=22 Score=32.71 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=50.1
Q ss_pred HHHHHhcCC-CeEEEeec--hhhHHHHHHHHHHHhhcCCCCeEEEE-cCCCCCCCCCCC-----------Ccchhhh-hh
Q 009809 258 FAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPT-----------HCGSFDV-TF 321 (525)
Q Consensus 258 ~a~G~A~~G-~~pi~~t~--~~F~~~a~dqi~~~~~~~~~pvvi~~-~~~G~~g~~G~t-----------H~~~~d~-~~ 321 (525)
.|.|++++. -++++.+. ..|++..+.. +..+...++|++++. ++.++ +..+.+ .....|+ .+
T Consensus 59 ~AiGa~la~p~~~Vv~i~GDG~f~~~g~~e-L~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~~~ 136 (178)
T cd02008 59 VAIGMAKASEDKKVVAVIGDSTFFHSGILG-LINAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIEAL 136 (178)
T ss_pred HHhhHHhhCCCCCEEEEecChHHhhccHHH-HHHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHHHH
Confidence 566666653 35566654 5555432333 344667889977766 44443 111110 0011122 22
Q ss_pred hhc--CCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 322 MAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 322 ~~~--ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
.+. +....|-.|.+-+++...+++++. .++|.+|..
T Consensus 137 a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 137 VRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 222 233445555566655588888864 578987643
No 274
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=76.80 E-value=16 Score=40.59 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcC----CC-eEEEeechh--hHH-HHHHHHHHHhhcCCCCeEEEEcCCCCC--CCCCCC--Ccc------
Q 009809 254 HAVTFAAGLACE----GL-KPFCAIYSS--FMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPT--HCG------ 315 (525)
Q Consensus 254 ~~~~~a~G~A~~----G~-~pi~~t~~~--F~~-~a~dqi~~~~~~~~~pvvi~~~~~G~~--g~~G~t--H~~------ 315 (525)
+.+++|.|+|++ |. ..+++.+++ +.. .++|. ++.++.++.|++++..+-+.. +.-+.. |..
T Consensus 117 ~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EA-ln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~ 195 (581)
T PRK12315 117 TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEG-LNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTN 195 (581)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHH-HHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcc
Confidence 466777777774 42 334444443 443 66777 577888889999998766642 111111 111
Q ss_pred hhh-hhhhhc--CCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 316 SFD-VTFMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 316 ~~d-~~~~~~--ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
..+ ...+.. ++.+.++...|..++...++.+. ..++|++|..
T Consensus 196 ~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~-~~~gP~~i~~ 240 (581)
T PRK12315 196 GQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK-DIDHPIVLHI 240 (581)
T ss_pred cccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH-hCCCCEEEEE
Confidence 001 123444 33344446677888888888774 3578988754
No 275
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=75.82 E-value=35 Score=36.32 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=86.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecC------CCCCcchHHHHHhCCCCe-eeccchHHHHHHHHHHHhcC-C-CeEE
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAA------MGGGTGLNLFLRRFPTRC-FDVGIAEQHAVTFAAGLACE-G-LKPF 270 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D------~~~s~~l~~~~~~~p~r~-~~~gIaE~~~~~~a~G~A~~-G-~~pi 270 (525)
..++.+|..+.|...+-...+++-+-+- -|+..++..-.+..|+.. .--|-+||+|.-.|++.|.. . .|-+
T Consensus 6 RlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~ 85 (617)
T COG3962 6 RLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIY 85 (617)
T ss_pred hhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceee
Confidence 3567777777777766555443322111 123345555555566643 35678999999999999985 2 3444
Q ss_pred Eee--chhhHHHHHHHHHHHhh---cCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEcc--------CCH
Q 009809 271 CAI--YSSFMQRAYDQVVHDVD---LQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAP--------SDE 336 (525)
Q Consensus 271 ~~t--~~~F~~~a~dqi~~~~~---~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P--------~~~ 336 (525)
.+| .++....+. ..++ -.++||.++-.+ -+ +-..-|.=|+.|+..-..---| --+.| .-|
T Consensus 86 A~tsSiGPGA~Nmv----TaAalA~~NrlPvLllPgD-vfA~R~PDPVLQQ~E~~~d~~it~N-DcfrPVSRYfDRItRP 159 (617)
T COG3962 86 AVTSSIGPGAANMV----TAAALAHVNRLPVLLLPGD-VFATRQPDPVLQQLEQFGDGTITTN-DCFRPVSRYFDRITRP 159 (617)
T ss_pred EEecccCCcHHHHH----HHHHHHHhhcCceEeeccc-hhcccCCChHHHhhhccccCceecc-cccccHHHHhhhcCCH
Confidence 444 566654442 2222 368999987322 11 2122356666665321110001 02333 348
Q ss_pred HHHHHHHHHHHhc-----CCCcEEEEecC
Q 009809 337 AELFHMVATAAAI-----DDRPSCFRYPR 360 (525)
Q Consensus 337 ~e~~~~~~~a~~~-----~~~Pv~i~~~~ 360 (525)
+++...+..|++- +-+|+.+-++.
T Consensus 160 EQl~sal~rA~~VmTDPA~~GpvTl~l~Q 188 (617)
T COG3962 160 EQLMSALPRAMRVMTDPADCGPVTLALCQ 188 (617)
T ss_pred HHHHHHHHHHHHHhCChhhcCceEEEech
Confidence 9999999888763 23678877655
No 276
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=74.17 E-value=13 Score=36.91 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=32.1
Q ss_pred eEEEEEcccc--cccchhHHHHHhccccCCCEEEEEECCC
Q 009809 13 NVVAVIGDGA--MTAGQAYEAMNNAGYLDSDMIVILNDNK 50 (525)
Q Consensus 13 ~v~~~~GDG~--~~eG~~~Ealn~A~~~~l~l~~iv~~N~ 50 (525)
.++.++.||. .++|........|...+.-++||+-||.
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 8999999999 9999888878888888877777777764
No 277
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=73.97 E-value=12 Score=28.80 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=43.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHH
Q 009809 390 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 390 dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~ 457 (525)
+++|.+. +....|..|.+.|++.|++...+++..-.+ ..+.+.+... ..-++|++.....||+...
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEKLVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 3555554 445778889999999999999999864222 2234444433 2346777777667888643
No 278
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=73.95 E-value=11 Score=30.48 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc----cCCeEEEEcCCCCCCHHHHH
Q 009809 388 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSHV 458 (525)
Q Consensus 388 g~dv~iva~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~----~~~~vvvvE~~~~gglg~~v 458 (525)
+.+|+|++.|+ ....+..|.+.|++.|++...+++.. +.+...++.+ .+=+.|++.....||+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHH
Confidence 46799999883 67889999999999999999999753 2332222221 23366777766678886443
No 279
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=71.58 E-value=20 Score=39.88 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=58.7
Q ss_pred HHHHHHHHhcC-----C-CeEEEeechhhH---HHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCC-----cchhhh-
Q 009809 255 AVTFAAGLACE-----G-LKPFCAIYSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDV- 319 (525)
Q Consensus 255 ~~~~a~G~A~~-----G-~~pi~~t~~~F~---~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH-----~~~~d~- 319 (525)
.+++|.|+|++ + .+++++..++.- ...+|. ++.++..+.|++++.++.++. -++++. ....++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~~nli~IvdnN~~~-i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA-LNNAGDLKSDLIVILNDNEMS-ISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH-HHHHHhhCCCEEEEEECCCCc-CCCcchhhhhhhccccHH
Confidence 44556666653 1 356667665442 255555 456777779998888776652 222221 111111
Q ss_pred hhhhcCCCcEEEc---cCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 320 TFMACLPNMVVMA---PSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 320 ~~~~~ipg~~v~~---P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
..++. -||.++. -.|..++...+..+.. .++|++|..
T Consensus 200 ~~~~a-~G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~ 239 (580)
T PRK05444 200 TLFEE-LGFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHV 239 (580)
T ss_pred HHHHH-cCCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 23444 2666553 4789999999988754 468987754
No 280
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=71.15 E-value=9.6 Score=38.56 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=57.9
Q ss_pred HHHHHHHhc----CCCeEEEee-chhhH---HHHHHHHHHHhhcCCCCeEEEEcCCC--CCC--CCCCCCcchhhhhhhh
Q 009809 256 VTFAAGLAC----EGLKPFCAI-YSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAG--LVG--ADGPTHCGSFDVTFMA 323 (525)
Q Consensus 256 ~~~a~G~A~----~G~~pi~~t-~~~F~---~~a~dqi~~~~~~~~~pvvi~~~~~G--~~g--~~G~tH~~~~d~~~~~ 323 (525)
+.+|+|.|+ .|...++.. +++.. ...+|. +|.++..++||++++.+-+ ++- ....+-....+.+..-
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Ea-lN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~ 185 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEA-LNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGY 185 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHH-HHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHH-HHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhcc
Confidence 444445555 465444443 54442 233444 6889999999999985444 311 1111111233434444
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEe
Q 009809 324 CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 358 (525)
Q Consensus 324 ~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~ 358 (525)
.+|++ .+.=.|+.++...++.|++. .++|++|-.
T Consensus 186 gip~~-~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 186 GIPGI-RVDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp TSEEE-EEETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CCcEE-EECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 56766 45889999999999888753 468988743
No 281
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=70.26 E-value=14 Score=33.70 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcC
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 448 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~ 448 (525)
++||+-|..-..+.++++.|++.|+.+=.|-+. ..+.+.|+.+..+-..++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 567777877777888999999999877666654 5789999998887788888874
No 282
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=68.99 E-value=16 Score=30.10 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHHH
Q 009809 388 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHV 458 (525)
Q Consensus 388 g~dv~iva~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~v 458 (525)
..+|+|++.| +....|..|.+.|++.|++...+++.. .|--.+.+.+.-. .+=+.|++.....||.....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~ 85 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIM 85 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHH
Confidence 4679999888 467889999999999999999999842 1211223333221 23356777766678887554
No 283
>PLN02790 transketolase
Probab=68.75 E-value=41 Score=38.05 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEcc----CCHHHHHHHHHHHHhcCC
Q 009809 279 QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP----SDEAELFHMVATAAAIDD 351 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P----~~~~e~~~~~~~a~~~~~ 351 (525)
-.++|. ++.++.+++| ++++.++-++ .-+|++.. ..+++ ..++.+ ||.++.+ .|..++..++..+....+
T Consensus 152 G~~~EA-l~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~ 228 (654)
T PLN02790 152 GISNEA-ASLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTD 228 (654)
T ss_pred hHHHHH-HHHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 466666 5778889997 6666665554 12233322 13332 345664 9999988 467788888887754357
Q ss_pred CcEEEEe
Q 009809 352 RPSCFRY 358 (525)
Q Consensus 352 ~Pv~i~~ 358 (525)
+|++|..
T Consensus 229 ~P~lI~~ 235 (654)
T PLN02790 229 KPTLIKV 235 (654)
T ss_pred CeEEEEE
Confidence 8988754
No 284
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=67.25 E-value=20 Score=36.08 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=47.2
Q ss_pred eEEEeech--hhHHH-HHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCc--chhhhhhh---hcCCCcEEEccCCHHHH
Q 009809 268 KPFCAIYS--SFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTFM---ACLPNMVVMAPSDEAEL 339 (525)
Q Consensus 268 ~pi~~t~~--~F~~~-a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~--~~~d~~~~---~~ipg~~v~~P~~~~e~ 339 (525)
++++++++ .|.+- .++. ++.++..++|++++..+-++ +...+++. ...|+.-. -.+|+. .+.-.|+.++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~-l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~-~Vdg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEA-LNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGI-RVDGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHH-HHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEE-EECCCCHHHH
Confidence 45555554 44332 2343 57788899999988865453 11111111 11222211 134443 3344578888
Q ss_pred HHHHHHHHh---cCCCcEEEEe
Q 009809 340 FHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 340 ~~~~~~a~~---~~~~Pv~i~~ 358 (525)
...++.|++ ..++|++|-.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 887777764 3467988744
No 285
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=67.16 E-value=35 Score=32.60 Aligned_cols=94 Identities=23% Similarity=0.292 Sum_probs=53.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCC
Q 009809 389 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 468 (525)
Q Consensus 389 ~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~ 468 (525)
.++.||--=|.+.. |+.+| |....-+.+.|+.+-+.+.++.++....+++++-+... ...+|+..|.++|+.
T Consensus 95 ~~v~iIPgiSS~q~---a~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~~--~P~~IA~~L~~~G~~ 166 (210)
T COG2241 95 EEVEIIPGISSVQL---AAARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDDF--GPAEIAKLLTENGIG 166 (210)
T ss_pred cceEEecChhHHHH---HHHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCCC--CHHHHHHHHHhCCCC
Confidence 35666652233333 33344 66555555555557788888888866667777776642 346888999999874
Q ss_pred CCCcce-EEeecCCccCCCCChH
Q 009809 469 DGTVKW-RPLVLPDRYIDHGSPA 490 (525)
Q Consensus 469 ~~~~~~-~~ig~~d~~~~~g~~~ 490 (525)
..+.-+ -+++.+|.-+..++.+
T Consensus 167 ~~~~~VlE~L~~~~Eri~~~~~~ 189 (210)
T COG2241 167 DSRVTVLENLGYPDERITDGTAE 189 (210)
T ss_pred CceEEEEcccCCCchhhhcCchh
Confidence 212212 2455555444334333
No 286
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=64.67 E-value=39 Score=34.90 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=46.8
Q ss_pred CeEEEeechhhHH---HHHHHHHHHhhcCCCCeEEEEcCCCC-CCC--CCCCCc-chhhhhhhhcCCCcEEEccCCHHHH
Q 009809 267 LKPFCAIYSSFMQ---RAYDQVVHDVDLQKLPVRFAMDRAGL-VGA--DGPTHC-GSFDVTFMACLPNMVVMAPSDEAEL 339 (525)
Q Consensus 267 ~~pi~~t~~~F~~---~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~--~G~tH~-~~~d~~~~~~ipg~~v~~P~~~~e~ 339 (525)
-+++++++++... ..+|. ++.++..++|+++++.+-++ .+. ...+.. ...+.+-.-.+|++.| .=.|..++
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ea-ln~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av 234 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFEC-LNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAV 234 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHH-HHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHH
Confidence 4566676654431 12233 57788899999998865442 111 001111 1222222224676655 44566655
Q ss_pred HHHHHHHHh---cCCCcEEEEe
Q 009809 340 FHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 340 ~~~~~~a~~---~~~~Pv~i~~ 358 (525)
...+..|++ ..++|++|-.
T Consensus 235 ~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHhCCCCEEEEE
Confidence 555544443 2467987743
No 287
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=63.95 E-value=30 Score=35.71 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCC-CeEEEeechh--hHHH-HHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCc--chhhhhh-h--hc
Q 009809 254 HAVTFAAGLACEG-LKPFCAIYSS--FMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTF-M--AC 324 (525)
Q Consensus 254 ~~~~~a~G~A~~G-~~pi~~t~~~--F~~~-a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~--~~~d~~~-~--~~ 324 (525)
.++|+|.|..+.+ -+++++++++ |.+- .++. ++.++..++||++++.+-++. ...+++. ...|+.- . -.
T Consensus 130 ~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~Ea-L~tA~~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~a~a~G 207 (341)
T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEA-LNFAGVFKAPVVFFVQNNQWA-ISVPRSKQTAAPTLAQKAIAYG 207 (341)
T ss_pred HHHhHHHHHHhhCCCCEEEEEecCCccccChHHHH-HHHHhccCCCEEEEEECCCCc-cccchhhhhCCcCHHHHHhhCC
Confidence 3444444444444 4566666654 4332 2343 577888999999988655531 1111111 1222221 1 13
Q ss_pred CCCcEEEccCCHHHHHH----HHHHHHhcCCCcEEEEe
Q 009809 325 LPNMVVMAPSDEAELFH----MVATAAAIDDRPSCFRY 358 (525)
Q Consensus 325 ipg~~v~~P~~~~e~~~----~~~~a~~~~~~Pv~i~~ 358 (525)
+|+.. +.-.|..++.. ++..+. ..++|++|-.
T Consensus 208 ~~~~~-Vdg~d~~av~~a~~~A~~~a~-~~~gP~lIev 243 (341)
T TIGR03181 208 IPGVQ-VDGNDVLAVYAVTKEAVERAR-SGGGPTLIEA 243 (341)
T ss_pred CCEEE-ECCCCHHHHHHHHHHHHHHHH-cCCCCEEEEE
Confidence 45443 34445544444 444443 3478988743
No 288
>PRK05899 transketolase; Reviewed
Probab=60.62 E-value=80 Score=35.48 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=51.5
Q ss_pred eEEEeec--hhhH-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEccC--CHHHH
Q 009809 268 KPFCAIY--SSFM-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS--DEAEL 339 (525)
Q Consensus 268 ~pi~~t~--~~F~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P~--~~~e~ 339 (525)
+.+++.. +.|. ...+|. ++.++..++| ++++..+.++ +..+++.. ...|+ ..++.+ ||.++.-. |..++
T Consensus 151 ~~v~~v~GDG~~~~g~~~Ea-l~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l 227 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEA-CSLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAI 227 (624)
T ss_pred CeEEEEECcchhhchHHHHH-HHHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHH
Confidence 4555554 4443 233555 4567778987 5666666554 22222221 12333 344553 78777666 89999
Q ss_pred HHHHHHHHhcCCCcEEEEe
Q 009809 340 FHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 340 ~~~~~~a~~~~~~Pv~i~~ 358 (525)
...+..+.. .++|++|..
T Consensus 228 ~~al~~a~~-~~~P~vI~v 245 (624)
T PRK05899 228 DAAIEEAKA-STKPTLIIA 245 (624)
T ss_pred HHHHHHHHh-cCCCEEEEE
Confidence 999998865 468987754
No 289
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=60.56 E-value=45 Score=33.95 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCeEE-EeechhhH---HHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCc---chhhhhhhh--cCCCcEEEccCCH
Q 009809 266 GLKPF-CAIYSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC---GSFDVTFMA--CLPNMVVMAPSDE 336 (525)
Q Consensus 266 G~~pi-~~t~~~F~---~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~---~~~d~~~~~--~ipg~~v~~P~~~ 336 (525)
+-..+ ++.|.+.. -..||. +|+++++++||++++-+-++ ..|.+|. ...|. +.| .|||+.| .-.|.
T Consensus 185 ~~~~v~~alYGDGAaNQGQ~fEa-~NMA~LW~LP~IFvCENN~y--GMGTs~~Rasa~tey-ykRG~yiPGl~V-dGmdv 259 (394)
T KOG0225|consen 185 REDAVCFALYGDGAANQGQVFEA-FNMAALWKLPVIFVCENNHY--GMGTSAERASASTEY-YKRGDYIPGLKV-DGMDV 259 (394)
T ss_pred cCCceEEEEeccccccchhHHHH-hhHHHHhCCCEEEEEccCCC--ccCcchhhhhcChHH-HhccCCCCceEE-CCcch
Confidence 43334 44487774 355666 68999999999999954442 1223332 22221 333 4898753 34444
Q ss_pred HHHHHHHHHHHh---cCCCcEEE
Q 009809 337 AELFHMVATAAA---IDDRPSCF 356 (525)
Q Consensus 337 ~e~~~~~~~a~~---~~~~Pv~i 356 (525)
--+....+.|.+ ..++|.++
T Consensus 260 laVr~a~KfA~~~~~~g~GPilm 282 (394)
T KOG0225|consen 260 LAVREATKFAKKYALEGKGPILM 282 (394)
T ss_pred hhHHHHHHHHHHHHhcCCCCEEE
Confidence 444444444432 24789775
No 290
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=59.96 E-value=23 Score=31.32 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecccc-ccC-------------cHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHH
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFC-KPL-------------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l-~P~-------------d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l 462 (525)
+...+..+++.|++.|++++++++... .|+ +.+.+.+.+..+..+|+.=.-+.+++.+.+...+
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~l 93 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHH
Confidence 445666667788888999999999876 222 1234455666777777766655677777766544
No 291
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=59.58 E-value=30 Score=31.20 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=24.5
Q ss_pred CceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEE
Q 009809 127 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 162 (525)
Q Consensus 127 g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v 162 (525)
|+.+..+ .|..++...++++.+ .++|++|..
T Consensus 124 g~~v~~P---s~~~~~~~ll~~a~~--~~~P~~irl 154 (156)
T cd07033 124 NMTVLRP---ADANETAAALEAALE--YDGPVYIRL 154 (156)
T ss_pred CCEEEec---CCHHHHHHHHHHHHh--CCCCEEEEe
Confidence 6666656 888888999999987 567998765
No 292
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=58.00 E-value=62 Score=36.47 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCC--CeEEEee-chhhH-HHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 009809 255 AVTFAAGLACEG--LKPFCAI-YSSFM-QRAYDQVVHDVDLQKLPVRFAMDRAGL 305 (525)
Q Consensus 255 ~~~~a~G~A~~G--~~pi~~t-~~~F~-~~a~dqi~~~~~~~~~pvvi~~~~~G~ 305 (525)
++|+|.|..+.+ .+.++.+ .+.|. ..++|. ++.++..++|++++..+.++
T Consensus 128 a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Ea-l~~a~~~~~~li~I~dnN~~ 181 (641)
T PRK12571 128 ALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEA-LNNAGAADRRLIVILNDNEM 181 (641)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHH-HHHHHHhCCCEEEEEECCCe
Confidence 344444444444 3444444 34443 345565 45677778899998887775
No 293
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=57.32 E-value=53 Score=34.18 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCC--Ccchhhhh-hhhcCCCcEEEccCCHHHHHHHHHHHHh--cCCCcE
Q 009809 280 RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT--HCGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPS 354 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~t--H~~~~d~~-~~~~ipg~~v~~P~~~~e~~~~~~~a~~--~~~~Pv 354 (525)
..+|. +|.++..++|+++++.+-++ +..-++ ++...++. ....+|++ .+.=.|+.++...+..|++ +.++|+
T Consensus 176 ~~~Ea-ln~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~~gP~ 252 (362)
T PLN02269 176 QLFEA-LNIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGL-KVDGMDVLAVKQACKFAKEHALSNGPI 252 (362)
T ss_pred HHHHH-HHHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeE-EECCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 33454 58889999999999876553 111111 11122221 11246665 4577788888888887754 137898
Q ss_pred EEEe
Q 009809 355 CFRY 358 (525)
Q Consensus 355 ~i~~ 358 (525)
+|-.
T Consensus 253 lIe~ 256 (362)
T PLN02269 253 VLEM 256 (362)
T ss_pred EEEE
Confidence 8754
No 294
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=56.74 E-value=98 Score=32.45 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=73.5
Q ss_pred EeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC--CeEEEEcCC-CCCCHH---HHH
Q 009809 385 LIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH--EVLITVEEG-SIGGFG---SHV 458 (525)
Q Consensus 385 l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~--~~vvvvE~~-~~gglg---~~v 458 (525)
+..|.+|.++..|.--..-.+-++. .|.++.+++..+=.|+|.+.|++.+++. -.+|++-.+ .+.|.- .+|
T Consensus 77 ~~pgdkVLv~~nG~FG~R~~~ia~~---~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I 153 (383)
T COG0075 77 VEPGDKVLVVVNGKFGERFAEIAER---YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEI 153 (383)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHH---hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHH
Confidence 4567889999999887766555543 4999999999999999999999998743 223444433 344443 455
Q ss_pred HHHHHHcCCC---C-----C--CcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 459 VQFLAQDGLL---D-----G--TVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 459 ~~~l~~~~~~---~-----~--~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
+..+.+++.+ + + +.++...|+ | ..-+|++.-+.-==|+..=.+.+++.+.+..
T Consensus 154 ~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgi-D-v~itgSQK~l~~PPGla~v~~S~~a~e~~~~ 216 (383)
T COG0075 154 AKAAKEHGALLIVDAVSSLGGEPLKVDEWGI-D-VAITGSQKALGAPPGLAFVAVSERALEAIEE 216 (383)
T ss_pred HHHHHHcCCEEEEEecccCCCcccchhhcCc-c-EEEecCchhccCCCccceeEECHHHHHHHhc
Confidence 5666665431 0 0 112222222 1 1124555554444555555555555555544
No 295
>PTZ00089 transketolase; Provisional
Probab=56.62 E-value=1.1e+02 Score=34.62 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCcc-hhhh-hhhhcCCCcEEEccC----CHHHHHHHHHHHHhcCC
Q 009809 279 QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS----DEAELFHMVATAAAIDD 351 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~~-~~d~-~~~~~ipg~~v~~P~----~~~e~~~~~~~a~~~~~ 351 (525)
-.++|. ++.++..++| ++++.+.-+. .-+|+++-. .+++ ..++.+ ||.++.+. |..++..++..+....+
T Consensus 163 G~~~EA-l~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~a~~~~~ 239 (661)
T PTZ00089 163 GVSQEA-LSLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEEAKKSKG 239 (661)
T ss_pred HHHHHH-HHHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 466676 5778888987 5666665553 233444321 2222 356665 99999884 67777777877754346
Q ss_pred CcEEEEec
Q 009809 352 RPSCFRYP 359 (525)
Q Consensus 352 ~Pv~i~~~ 359 (525)
+|++|...
T Consensus 240 ~P~~I~~~ 247 (661)
T PTZ00089 240 KPKLIIVK 247 (661)
T ss_pred CcEEEEEE
Confidence 89887553
No 296
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=56.00 E-value=59 Score=25.36 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=43.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHHHHHH
Q 009809 387 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQF 461 (525)
Q Consensus 387 ~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~v~~~ 461 (525)
+..+|+|.+ -+....|.+|.+.|++.|++...+++.. .+ +.+.+.+... .+=++|+++....||+. +|.++
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~-~~-~~~~~~~~~g~~~vP~i~i~g~~igG~~-~l~~~ 77 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGN-DA-RGRSLRAVTGATTVPQVFIGGKLIGGSD-ELEAY 77 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCC-Ch-HHHHHHHHHCCCCcCeEEECCEEEcCHH-HHHHH
Confidence 345566554 5777889999999999999999999853 11 1223333221 22355666655578874 44343
No 297
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=55.84 E-value=16 Score=31.07 Aligned_cols=41 Identities=34% Similarity=0.601 Sum_probs=22.9
Q ss_pred ccccCceEee-ccCCCCH-HHHHHHHHHhhhcCCCCCEEEEEEc
Q 009809 123 FEELGLYYIG-PVDGHNV-DDLVAILEEVKNTKTTGPVLIHVVT 164 (525)
Q Consensus 123 ~~~~g~~~~~-~~dG~d~-~~l~~al~~a~~~~~~~P~~i~v~t 164 (525)
.++.|+.|+- ++.+.++ .+-..++..+.+. .++|+++||+|
T Consensus 53 a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 53 AEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 5667766553 5665555 4455566666553 57899999987
No 298
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=55.36 E-value=72 Score=25.09 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=38.3
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC
Q 009809 390 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 450 (525)
Q Consensus 390 dv~iva~G~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~ 450 (525)
++.|++.+.. ...+++.+..|++.|+++.+ +... +.+....-..-..+.+.++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcch
Confidence 5677777654 57888999999999999977 3333 3444332222234567788887653
No 299
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=54.34 E-value=17 Score=39.74 Aligned_cols=64 Identities=33% Similarity=0.301 Sum_probs=50.0
Q ss_pred cccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCCCchhhhhcc--ccccCCC
Q 009809 120 STLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAA--DKYHGVA 184 (525)
Q Consensus 120 ~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~g~~~~~~~~--~~~h~~~ 184 (525)
.+.|+.+|..+++.+++|........++++++...- |+++++.+.++++++..+... ..+|..+
T Consensus 238 ~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~~~~~~~~~i~ 303 (632)
T KOG0523|consen 238 ATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVEDARAISVRIP 303 (632)
T ss_pred eeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcccccccccccCcC
Confidence 467999999999999999999888888888775333 999999999999997655322 3345544
No 300
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=52.65 E-value=20 Score=31.65 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=22.8
Q ss_pred cccccccchhHHHHHhccccCCCEEEEEECCC
Q 009809 19 GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50 (525)
Q Consensus 19 GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~ 50 (525)
|.|.. ...+++-.|...++|+++|+-+..
T Consensus 68 gpg~~---~~~~~l~~a~~~~~Pvl~i~~~~~ 96 (154)
T cd06586 68 GTGLL---NAINGLADAAAEHLPVVFLIGARG 96 (154)
T ss_pred CCcHH---HHHHHHHHHHhcCCCEEEEeCCCC
Confidence 78876 377888888888899999995554
No 301
>PRK12754 transketolase; Reviewed
Probab=50.90 E-value=1.1e+02 Score=34.60 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCcc-hhhh-hhhhcCCCcEEE---ccCCHHHHHHHHHHHHhcCCC
Q 009809 279 QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVM---APSDEAELFHMVATAAAIDDR 352 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~~-~~d~-~~~~~ipg~~v~---~P~~~~e~~~~~~~a~~~~~~ 352 (525)
-..+|. .+.++..++| ++++.+.-++ .-+|+++.. .+++ ..++.+ ||.++ .=.|..++..++..|....++
T Consensus 161 G~~~EA-~~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~ 237 (663)
T PRK12754 161 GISHEV-CSLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDK 237 (663)
T ss_pred hHHHHH-HHHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCC
Confidence 356666 5778889999 4566655553 234444432 2332 334443 77755 445677777777766444578
Q ss_pred cEEEEec
Q 009809 353 PSCFRYP 359 (525)
Q Consensus 353 Pv~i~~~ 359 (525)
|++|...
T Consensus 238 Pt~I~~~ 244 (663)
T PRK12754 238 PSLLMCK 244 (663)
T ss_pred CEEEEEE
Confidence 9887553
No 302
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=50.25 E-value=93 Score=34.91 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=30.4
Q ss_pred HHHHHHHHhcC----C--CeEEEee-chhhH-HHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 009809 255 AVTFAAGLACE----G--LKPFCAI-YSSFM-QRAYDQVVHDVDLQKLPVRFAMDRAGL 305 (525)
Q Consensus 255 ~~~~a~G~A~~----G--~~pi~~t-~~~F~-~~a~dqi~~~~~~~~~pvvi~~~~~G~ 305 (525)
.+++|.|+|++ | .+.++.+ -+.+- -..+|. .+.++..++|++++..+-++
T Consensus 116 ~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea-~~~a~~~~l~~i~ii~~N~~ 173 (617)
T TIGR00204 116 SISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEA-LNHAGDLKTDMIVILNDNEM 173 (617)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHH-HHHHHhcCCCEEEEEECCCc
Confidence 55666666663 4 3444433 22222 356666 57788889999888876664
No 303
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=49.89 E-value=1e+02 Score=24.24 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHh-----CCCcEEEEeccccccCcHHHHHHHhc---cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 009809 398 TAVQSCLAASALLES-----NGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~-----~Gi~v~vi~~~~l~P~d~~~i~~~~~---~~~~vvvvE~~~~gglg~~v~~~l~~ 464 (525)
+....|.+|.+.|++ .|+....+++.. .+...+.+.+... .+=+.|+++....||+. +|.+++.+
T Consensus 9 ~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~-~~~~~~~~ 81 (85)
T PRK11200 9 PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCT-DFEAYVKE 81 (85)
T ss_pred CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHH-HHHHHHHH
Confidence 445677777777776 799999999864 3333445555443 23356667766678886 44455544
No 304
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=49.35 E-value=96 Score=25.56 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=44.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc----cCCeEEEEcCCCCCCHHHH
Q 009809 388 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 388 g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~----~~~~vvvvE~~~~gglg~~ 457 (525)
..+|+|.+. +....|.+|.+.|.+.|++..++++-. .|--.+...++.+ .+=+.|.+.....||+...
T Consensus 7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 346777765 667888899999999999999999863 2322222222221 2336677887667998643
No 305
>PRK12753 transketolase; Reviewed
Probab=49.23 E-value=1.4e+02 Score=33.86 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCcc-hhhh-hhhhcCCCcEEEccC---CHHHHHHHHHHHHhcCCC
Q 009809 279 QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS---DEAELFHMVATAAAIDDR 352 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~~-~~d~-~~~~~ipg~~v~~P~---~~~e~~~~~~~a~~~~~~ 352 (525)
-..+|. .+.++..++| ++++.+.-++ .-+|+++.. .+++ ..++.+ ||.++.+. |..++..++..|....++
T Consensus 161 G~~~EA-~~~A~~~kL~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~ 237 (663)
T PRK12753 161 GISHEV-CSLAGTLGLGKLIGFYDHNGI-SIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDK 237 (663)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEEECCCC-cCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCC
Confidence 456666 5778889997 6666665553 223333321 1232 345554 88887544 456666667666544578
Q ss_pred cEEEEec
Q 009809 353 PSCFRYP 359 (525)
Q Consensus 353 Pv~i~~~ 359 (525)
|++|...
T Consensus 238 P~~I~~~ 244 (663)
T PRK12753 238 PSLIICR 244 (663)
T ss_pred eEEEEEE
Confidence 9887543
No 306
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=47.37 E-value=1.9e+02 Score=25.04 Aligned_cols=59 Identities=5% Similarity=-0.004 Sum_probs=38.7
Q ss_pred EEEEEechhHHHHHHHHHHHHhC-CCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCC
Q 009809 391 VALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEG 449 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~ 449 (525)
+++++.-...+.+.+.+...+.+ --++++|.++|.--+|.+.|.+.+ +....|+++-.+
T Consensus 2 Il~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 2 ILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 34444444444444444433322 456999999999999999988776 557888886544
No 307
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=47.17 E-value=73 Score=25.50 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=39.1
Q ss_pred cEEEEEech---h-HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCC
Q 009809 390 RVALLGYGT---A-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEG 449 (525)
Q Consensus 390 dv~iva~G~---~-~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~ 449 (525)
++.|+..|. . ...+.+.++.|++.|+.+.+-+ . -..+. +.+..+- .+.+-++++-+.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~-k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLG-KQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHH-HHHHHHHHTTESEEEEEEHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchh-HHHHHHhhcCCeEEEEECch
Confidence 578899988 4 4688889999999999998887 2 23333 3444433 456777776643
No 308
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=45.89 E-value=49 Score=33.97 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=50.8
Q ss_pred eEEEee-chhhH-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEcc---CCHHHH
Q 009809 268 KPFCAI-YSSFM-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAEL 339 (525)
Q Consensus 268 ~pi~~t-~~~F~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P---~~~~e~ 339 (525)
+.++-+ -+... -.++|. ...++..++. ++++.+.-++ .-+|.+.. ..+|+ .-+++ -||.|+.- .|.+++
T Consensus 145 ~vy~l~GDGel~EG~~~EA-~~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a-~Gw~v~~v~dGhd~~~i 221 (332)
T PF00456_consen 145 RVYVLMGDGELQEGSVWEA-ASLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEA-FGWNVIEVCDGHDVEAI 221 (332)
T ss_dssp -EEEEEEHHHHHSHHHHHH-HHHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHH-TT-EEEEEEETTBHHHH
T ss_pred eEEEEecCccccchhhHHH-HHHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHH-hhhhhcccccCcHHHHH
Confidence 344444 23333 466666 4567778886 6666555443 23444432 12332 34555 48888876 678888
Q ss_pred HHHHHHHHhcCCCcEEEEecC
Q 009809 340 FHMVATAAAIDDRPSCFRYPR 360 (525)
Q Consensus 340 ~~~~~~a~~~~~~Pv~i~~~~ 360 (525)
..++..|-...++|++|....
T Consensus 222 ~~A~~~a~~~~~kP~~Ii~~T 242 (332)
T PF00456_consen 222 YAAIEEAKASKGKPTVIIART 242 (332)
T ss_dssp HHHHHHHHHSTSS-EEEEEEE
T ss_pred HHHHHHHHhcCCCCceeecce
Confidence 888888855458898886654
No 309
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=44.80 E-value=92 Score=33.30 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=46.0
Q ss_pred CeEEEeechhhH--H-HHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhh---hhhhcCCCcEEEccCCHHHH
Q 009809 267 LKPFCAIYSSFM--Q-RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDV---TFMACLPNMVVMAPSDEAEL 339 (525)
Q Consensus 267 ~~pi~~t~~~F~--~-~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~---~~~~~ipg~~v~~P~~~~e~ 339 (525)
-+++++++++.. . ..+|. ++.++..++||++++.+-+. .+..-..+....++ +-.-.+|++. +.=.|+.++
T Consensus 223 ~~vvv~~~GDGa~~eG~f~Ea-Ln~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~-VDG~D~~av 300 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFEC-LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVH-VDGMDVLKV 300 (433)
T ss_pred CCEEEEEECCCccccChHHHH-HHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEE-ECCCCHHHH
Confidence 355666665542 2 22344 57788999999998855442 11100001111222 2222456554 355666666
Q ss_pred HHHHHHHHh---cCCCcEEEE
Q 009809 340 FHMVATAAA---IDDRPSCFR 357 (525)
Q Consensus 340 ~~~~~~a~~---~~~~Pv~i~ 357 (525)
...+..|++ ..++|++|-
T Consensus 301 ~~a~~~A~~~Ar~g~gP~LIe 321 (433)
T PLN02374 301 REVAKEAIERARRGEGPTLVE 321 (433)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 655544443 246898764
No 310
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.67 E-value=1.1e+02 Score=26.01 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=38.3
Q ss_pred CcEEEEEec--hh-HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCC
Q 009809 389 ERVALLGYG--TA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEG 449 (525)
Q Consensus 389 ~dv~iva~G--~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~ 449 (525)
.++.|++.+ .. ...+.+.+..|++.|+++.+-. . +.+.. .+..+- .+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~--~sl~k-qlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S--GSIGR-RYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C--CCHHH-HHHHhHhcCCCEEEEECcC
Confidence 467888888 54 4678888899999999998843 2 44433 333333 456777777765
No 311
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=43.49 E-value=2.2e+02 Score=29.24 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=30.8
Q ss_pred eEEeecCCccCCCCChH-HHHHHcC-CCHHHHHHHHHHHh---hcccccccccccC
Q 009809 474 WRPLVLPDRYIDHGSPA-DQLAQAG-LTPSHIAATVFNIL---GQTREALEIMSFK 524 (525)
Q Consensus 474 ~~~ig~~d~~~~~g~~~-~l~~~~g-l~~~~I~~~i~~~l---~~~~~~~~~~~~~ 524 (525)
..|||++ +||.+ +++++|| .+++.+++.+.+.+ ++-.+..-+.|.|
T Consensus 123 pIRIGVN-----~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K 173 (346)
T TIGR00612 123 AMRIGVN-----HGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK 173 (346)
T ss_pred CEEEecC-----CCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 4678874 44444 8889998 59999999997654 4444444444544
No 312
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=43.29 E-value=79 Score=23.90 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-c-CCeEEEEcCCCCCCHHHH
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-S-HEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~-~~~vvvvE~~~~gglg~~ 457 (525)
+....|..|.+.|++.|+....+++..- |-..+.+.+... . .=+.|+++....||+...
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHH
Confidence 4568888899999999999999998643 211122322222 1 336677777667887644
No 313
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.97 E-value=1.2e+02 Score=23.48 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=35.2
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcC
Q 009809 390 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEE 448 (525)
Q Consensus 390 dv~iva~G~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~ 448 (525)
++.|++.+.. ...+++.+..|++.|+.+.+.... +.++ +.+..+. .+...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 5777777764 467888889999999988775432 2333 3344333 33456666654
No 314
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=42.79 E-value=60 Score=25.03 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHHH
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHV 458 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~v 458 (525)
+....|.+|...|++.|+....+++.. .|-..+.+.+... .+=++|+++....||+....
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~-~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~ 67 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDG-DPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLY 67 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecC-CHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHH
Confidence 556788889899999999999999864 2211223333221 23366778876678887553
No 315
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=42.77 E-value=97 Score=31.57 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=48.5
Q ss_pred EEEEEechh-HHHHHHHHHHHHhCCCc-EEEEeccccccCcHHHH-----HHHhccCCeEEEEcCCCCCCHHHHHH
Q 009809 391 VALLGYGTA-VQSCLAASALLESNGLR-LTVADARFCKPLDHALI-----RSLAKSHEVLITVEEGSIGGFGSHVV 459 (525)
Q Consensus 391 v~iva~G~~-~~~a~~Aa~~L~~~Gi~-v~vi~~~~l~P~d~~~i-----~~~~~~~~~vvvvE~~~~gglg~~v~ 459 (525)
=+|+++|.. ..+..+|++.+++.|.. +-+++|.+.+|-|.+.+ ..+....+..|-+=+|..| +..-++
T Consensus 149 PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~g-~~a~l~ 223 (347)
T COG2089 149 PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLG-ILAPLA 223 (347)
T ss_pred CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCccc-hhHHHH
Confidence 468889965 58899999999998765 99999999999887643 2333334556667777666 443443
No 316
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=42.17 E-value=52 Score=34.41 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=40.4
Q ss_pred cEEEE---EechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEE
Q 009809 390 RVALL---GYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 445 (525)
Q Consensus 390 dv~iv---a~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvv 445 (525)
.|+|+ .||++-..+...++.|.++|+++.++++..- +...|.+.+..++.+++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 35554 5677778888889999999999999999775 66667766666666654
No 317
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=42.15 E-value=3.1e+02 Score=31.00 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=55.1
Q ss_pred HHHHHHHHHhc----CCC--eEEEee-chhhH-HHHHHHHHHHhhcCCCCeEEEEcCCCCC-----CCCCCCCc--ch--
Q 009809 254 HAVTFAAGLAC----EGL--KPFCAI-YSSFM-QRAYDQVVHDVDLQKLPVRFAMDRAGLV-----GADGPTHC--GS-- 316 (525)
Q Consensus 254 ~~~~~a~G~A~----~G~--~pi~~t-~~~F~-~~a~dqi~~~~~~~~~pvvi~~~~~G~~-----g~~G~tH~--~~-- 316 (525)
+.+++|.|+|+ .|. +.++.+ -+.+- --+||. .+.+++.+-+++++.++-+.. ..+|++.. ..
T Consensus 181 ~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEA-l~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~ 259 (641)
T PLN02234 181 TTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEA-MNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSC 259 (641)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHH-HHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHH
Confidence 34455566555 453 444444 22222 467777 466777677888888766541 23444431 11
Q ss_pred -------------hh-hhhhhcCCCcEEEccCCHHHH---HHHHHHHHhcC-CCcEEEEec
Q 009809 317 -------------FD-VTFMACLPNMVVMAPSDEAEL---FHMVATAAAID-DRPSCFRYP 359 (525)
Q Consensus 317 -------------~d-~~~~~~ipg~~v~~P~~~~e~---~~~~~~a~~~~-~~Pv~i~~~ 359 (525)
++ -..|+.+ ||.++-|.|..+. ..+++.+-... .+|++|...
T Consensus 260 ~l~~l~~~~~~~~~~~~~~fe~f-G~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~ 319 (641)
T PLN02234 260 ALSRLQSNCGMIRETSSTLFEEL-GFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVV 319 (641)
T ss_pred HHHHhhcccccccCCHHHHHHHc-CCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 01 1345654 8888756665444 44554442222 479887553
No 318
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=41.84 E-value=52 Score=27.64 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
....+.+|.+.|++.|+++..+++.. .|++.+.|.++++.
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSK 44 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHH
Confidence 35678899999999999999999874 68888888777654
No 319
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=41.40 E-value=1.1e+02 Score=26.33 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=47.0
Q ss_pred EEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCcccc---CceEEEeeCCcEEEEEechhHHHHHH
Q 009809 329 VVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEV---GKGRILIEGERVALLGYGTAVQSCLA 405 (525)
Q Consensus 329 ~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~---g~~~~l~~g~dv~iva~G~~~~~a~~ 405 (525)
.|+.|.+.+|+..++++|.+ .+.|+.++-..+........ .....+.. .+...+.+....+.|..|.....+.+
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~~--~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSSD--EGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTSS--TTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCccccccc--CCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 48999999999999999954 57788888766543221110 01111222 22222334467778888888877665
Q ss_pred HH
Q 009809 406 AS 407 (525)
Q Consensus 406 Aa 407 (525)
.+
T Consensus 80 ~l 81 (139)
T PF01565_consen 80 AL 81 (139)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 320
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=40.10 E-value=95 Score=29.26 Aligned_cols=93 Identities=19% Similarity=0.343 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCEEEEEEccC--CCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHH
Q 009809 135 DGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK--GRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALI 212 (525)
Q Consensus 135 dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~k--g~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 212 (525)
.|.|+++|..+.+.-. ....+..|.+.+ .++..-+. -||.+.+-.+. +....+++|.++|.
T Consensus 10 ~GSNlqaiida~~~~~----~~a~i~~Visd~~~A~~lerA~-----~~gIpt~~~~~--------k~~~~r~~~d~~l~ 72 (200)
T COG0299 10 NGSNLQAIIDAIKGGK----LDAEIVAVISDKADAYALERAA-----KAGIPTVVLDR--------KEFPSREAFDRALV 72 (200)
T ss_pred CcccHHHHHHHHhcCC----CCcEEEEEEeCCCCCHHHHHHH-----HcCCCEEEecc--------ccCCCHHHHHHHHH
Confidence 6889998888875211 112333444433 34444332 23443321111 12234677888877
Q ss_pred HHHhc-CCCEEEEecCCCCCcch--HHHHHhCCCCeeec
Q 009809 213 AEAEV-DKDVVAIHAAMGGGTGL--NLFLRRFPTRCFDV 248 (525)
Q Consensus 213 ~~~~~-d~~~v~~~~D~~~s~~l--~~~~~~~p~r~~~~ 248 (525)
+.++. .++++++. |...+ ..|.++|++|.+|.
T Consensus 73 ~~l~~~~~dlvvLA----GyMrIL~~~fl~~~~grIlNI 107 (200)
T COG0299 73 EALDEYGPDLVVLA----GYMRILGPEFLSRFEGRILNI 107 (200)
T ss_pred HHHHhcCCCEEEEc----chHHHcCHHHHHHhhcceEec
Confidence 77764 67888874 32222 46889999999996
No 321
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=39.13 E-value=5.4e+02 Score=27.95 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=76.7
Q ss_pred HHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEEEee-chhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCC
Q 009809 236 LFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH 313 (525)
Q Consensus 236 ~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t-~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH 313 (525)
.-.++..=||+.+ -+||++.-.|-.+++- |+-.++.. .++.+..++--+.| +-+..-|+++++..+.-.-.+-..-
T Consensus 45 ~aaqalGIk~I~~-RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~N-A~~n~wPll~IgGsa~~~~~~rGaf 122 (571)
T KOG1185|consen 45 VAAQALGIKFIGT-RNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVAN-AQMNCWPLLLIGGSASTLLENRGAF 122 (571)
T ss_pred HHHHHcCCeEeec-ccHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhh-hhhccCcEEEEecccchhhhccccc
Confidence 3445666789998 8999999988888874 55544444 78888766555444 3334458888764333211111234
Q ss_pred cchhhhhhhhcCCCcE-EEccCCHHHHHHHHHHHHhc----CCCcEEEEecC
Q 009809 314 CGSFDVTFMACLPNMV-VMAPSDEAELFHMVATAAAI----DDRPSCFRYPR 360 (525)
Q Consensus 314 ~~~~d~~~~~~ipg~~-v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~ 360 (525)
|....+.++|. -++ +..|.+..+.-..++.|++. ..+|+|+-++-
T Consensus 123 Qe~dQvel~rp--~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~ 172 (571)
T KOG1185|consen 123 QELDQVELFRP--LCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPA 172 (571)
T ss_pred ccccHHhhhhh--hhhhccCCCChhhccHHHHHHHHHHhcCCCCceEEeccc
Confidence 55555566663 333 66899988888888777653 45678875544
No 322
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=38.70 E-value=3e+02 Score=30.24 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCCCeEEEee--chhhHH
Q 009809 202 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFMQ 279 (525)
Q Consensus 202 ~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t--~~~F~~ 279 (525)
.|..+|.+.|...+ -+=+|+++- +.|+-|.-....+++=-.-+=|.|.++.-+|.|+|.+-.+|++.+ ++.-..
T Consensus 9 ~~a~v~~eeL~r~G---V~~vvicPG-SRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~A 84 (566)
T COG1165 9 LWARVFLEELARLG---VRDVVICPG-SRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVA 84 (566)
T ss_pred HHHHHHHHHHHHcC---CcEEEECCC-CCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhh
Confidence 34455544444332 355677764 345655555566665556788999999999999999987776554 544333
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcE--EEccCCHHHHHHHHHHH
Q 009809 280 RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMV--VMAPSDEAELFHMVATA 346 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~--v~~P~~~~e~~~~~~~a 346 (525)
..+-. +..+.+.+.|.++...++-. .- +-..-|.++...+|.+.|... .=.|.+..++.+.+.+.
T Consensus 85 Nl~PA-ViEA~~srvpLIVLTADRP~EL~-~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~ 152 (566)
T COG1165 85 NLYPA-VIEANLSRVPLIVLTADRPPELR-GCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTI 152 (566)
T ss_pred hccHH-HHhhhhcCCceEEEeCCCCHHHh-cCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHH
Confidence 33333 45688899998887755433 11 112356777777888777654 33677777776665544
No 323
>PRK10638 glutaredoxin 3; Provisional
Probab=38.19 E-value=1e+02 Score=24.10 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=38.7
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHH
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~ 457 (525)
++|.+. .....|..|.+.|++.|+...++++..-... .+.+.+... .+=++|+++....||+...
T Consensus 4 v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g~~igG~~~~ 69 (83)
T PRK10638 4 VEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDAQHIGGCDDL 69 (83)
T ss_pred EEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 444442 3457888888899999999999998531111 122333221 2235666665557888533
No 324
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=38.11 E-value=1.5e+02 Score=28.42 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcH--------HHHHHHhccCCeEEEEcCCCCCCHHHHHHHHH
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDH--------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~--------~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l 462 (525)
..+..+++.+.++|.++++++++-+-.++. ..+.+.++.+..+|++---+.+++...+.+.|
T Consensus 44 ~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~sipg~LKNai 113 (219)
T TIGR02690 44 LLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccccCcCHHHHHHH
Confidence 344455666776799999999875422221 33556666777777666555566666665543
No 325
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=37.62 E-value=74 Score=26.61 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
....|.+|.+.|++.|+...++++.. .|+..+.|.++++..
T Consensus 8 ~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~ 48 (105)
T cd03035 8 NCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKV 48 (105)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHh
Confidence 45788899999999999999999865 788999998888644
No 326
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=37.36 E-value=1.8e+02 Score=27.26 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHh-CCCcEEEEeccccccCcH--------------HHHHHHhccCCeEEEEcCCCCCCHHHHHHHH
Q 009809 397 GTAVQSCLAASALLES-NGLRLTVADARFCKPLDH--------------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 461 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~--------------~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~ 461 (525)
|++-..+..+++.+++ .|+++++++++...|-+. ..+ +.+..++.+|+.=--+.|++...+..+
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD~ii~gsPty~g~~~~~lk~f 91 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATP-DELADYDAIIFGTPTRFGNMAGQMRNF 91 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCH-HHHHhCCEEEEEecccCCCchHHHHHH
Confidence 3344566667777877 899999999975333111 112 334456666554444468888888777
Q ss_pred HHHc
Q 009809 462 LAQD 465 (525)
Q Consensus 462 l~~~ 465 (525)
+...
T Consensus 92 ld~~ 95 (200)
T PRK03767 92 LDQT 95 (200)
T ss_pred HHHh
Confidence 7664
No 327
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=37.15 E-value=2.3e+02 Score=25.58 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCCeEEEEEcccccccchhHHHHHhcc-ccCCCEEEEEECCC
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAG-YLDSDMIVILNDNK 50 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~-~~~l~l~~iv~~N~ 50 (525)
....++|..+=|- |...-+|-.|. ..+.|+++|+-.-+
T Consensus 57 ~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 57 GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4556678777772 35777777788 77899999994443
No 328
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=36.69 E-value=81 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=36.6
Q ss_pred EEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 393 LLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 393 iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
|.-||. ....+++|.+.|++.|+...++|+.- .|++.+.|.++++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 334554 45789999999999999999999865 78888888777654
No 329
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=36.26 E-value=4.1e+02 Score=27.93 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCC-CeEEEEcCCCCCCCCCCCCc---chhhh-hhhhcCCCcEEEcc
Q 009809 279 QRAYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC---GSFDV-TFMACLPNMVVMAP 333 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~-pvvi~~~~~G~~g~~G~tH~---~~~d~-~~~~~ipg~~v~~P 333 (525)
-..+|. .+.++..++ +++++.+.-+. ..+|++-. ..+++ .-+++ -||.|+.-
T Consensus 162 G~vwEA-~~~Ag~~kL~NLivIvD~N~~-qidG~t~~v~~~~e~l~~kf~A-fGW~vi~V 218 (386)
T cd02017 162 PESLGA-IGLAAREKLDNLIFVVNCNLQ-RLDGPVRGNGKIIQELEGIFRG-AGWNVIKV 218 (386)
T ss_pred HHHHHH-HHHHHHhCCCCEEEEEECCCC-ccCCcccccccCchhHHHHHHh-cCCEEEEE
Confidence 466676 456777776 67777766564 23444433 23343 34555 48888764
No 330
>COG4448 AnsA L-asparaginase II [Amino acid transport and metabolism]
Probab=36.25 E-value=22 Score=34.84 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=41.4
Q ss_pred CCcEEEEEech--hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 388 GERVALLGYGT--AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 388 g~dv~iva~G~--~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
+.|+.|.+... ....+..|+..|.+.|++...+.+-.-||++..++..+.++.
T Consensus 77 drdLAlacsSHsGe~ehv~~a~~mL~rAglD~~aLeCgahwps~q~~~i~~art~ 131 (339)
T COG4448 77 DRDLALACSSHSGEIEHVRLAANMLWRAGLDPSALECGAHWPSGQKTLIALARTG 131 (339)
T ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHcCCCccceeccCCCCCCchhHHHhhhcc
Confidence 45777776554 346777888999999999999999888999988877666543
No 331
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.59 E-value=2.6e+02 Score=28.94 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=30.6
Q ss_pred eEEeecCCccCCCCChH-HHHHHcCC-CHHHHHHHHHHHh---hcccccccccccC
Q 009809 474 WRPLVLPDRYIDHGSPA-DQLAQAGL-TPSHIAATVFNIL---GQTREALEIMSFK 524 (525)
Q Consensus 474 ~~~ig~~d~~~~~g~~~-~l~~~~gl-~~~~I~~~i~~~l---~~~~~~~~~~~~~ 524 (525)
..|||++ +||.+ +++++||- +++.+++.+.+.+ ++-.+-.-+.|.|
T Consensus 132 pIRIGvN-----~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K 182 (360)
T PRK00366 132 PIRIGVN-----AGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK 182 (360)
T ss_pred CEEEecC-----CccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 4688874 45554 78888986 8999999997654 4444433444444
No 332
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=35.56 E-value=2.2e+02 Score=28.95 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=48.4
Q ss_pred CeEEEeechh--hHHHH-HHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCC--c---chhhhhhhhcCCCcEEEccCCHHH
Q 009809 267 LKPFCAIYSS--FMQRA-YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--C---GSFDVTFMACLPNMVVMAPSDEAE 338 (525)
Q Consensus 267 ~~pi~~t~~~--F~~~a-~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH--~---~~~d~~~~~~ipg~~v~~P~~~~e 338 (525)
-+++++++++ |.+-. ++. ++.++..++|+++++.+-++ +...++. . ...+++-.-.+|+. .+.-.|+.+
T Consensus 132 ~~~vv~~~GDGa~~~g~~~ea-ln~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~-~Vdg~d~~a 208 (315)
T TIGR03182 132 DNVTACFFGDGAANQGQFYES-FNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGE-RVDGMDVLA 208 (315)
T ss_pred CCEEEEEeCCCcccccHHHHH-HHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEE-EECCCCHHH
Confidence 3556666544 43222 233 57788899999988855453 1111111 1 12222222245655 345567888
Q ss_pred HHHHHHHHHh---cCCCcEEEEe
Q 009809 339 LFHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 339 ~~~~~~~a~~---~~~~Pv~i~~ 358 (525)
+...+..|++ ..++|++|-.
T Consensus 209 v~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 209 VREAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHHccCCCEEEEE
Confidence 7777777654 3467988744
No 333
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=35.46 E-value=1.5e+02 Score=26.97 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEEC
Q 009809 8 KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 48 (525)
Q Consensus 8 ~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~ 48 (525)
.+.-..+++-.|=|..+ ..-++..|...+.|+++|+-.
T Consensus 58 sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 58 SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 33344445555777775 556677788889999999943
No 334
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=35.29 E-value=1.9e+02 Score=21.68 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=41.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHHHHHH
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQF 461 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~v~~~ 461 (525)
++|.+ -+....|.+|.+.|++.|+....+++.. .+ ..+.+..... .+=++|+++....||.. +|.++
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~~igg~~-~l~~~ 70 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGELIGGSD-DLEKY 70 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCEEEeCHH-HHHHH
Confidence 44444 4667888888899999999999999753 22 2333333222 23356667766567754 33343
No 335
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=35.01 E-value=3.7e+02 Score=24.80 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=43.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEecccccc--CcHHHHHHHhccC---CeEEEEcCCC-C-CCHHHHHHHHH
Q 009809 390 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP--LDHALIRSLAKSH---EVLITVEEGS-I-GGFGSHVVQFL 462 (525)
Q Consensus 390 dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P--~d~~~i~~~~~~~---~~vvvvE~~~-~-gglg~~v~~~l 462 (525)
+|.||+=|..+ |.+|++... +.+..+.|+...=+| +.=+.|.++++.+ ..+|.+|+.- . -|.|+....++
T Consensus 1 kVIlvTDGD~~--A~ravE~aa-~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAA-KNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHH--HHHHHHHHH-HHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 47788888765 222333222 234566777765555 5556677777553 3455556653 3 47787777777
Q ss_pred HHc
Q 009809 463 AQD 465 (525)
Q Consensus 463 ~~~ 465 (525)
..+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 754
No 336
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.60 E-value=2e+02 Score=22.66 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=37.1
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHH-hccCCeEEEEcCC
Q 009809 390 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSL-AKSHEVLITVEEG 449 (525)
Q Consensus 390 dv~iva~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~-~~~~~~vvvvE~~ 449 (525)
+++|+..+. ....+.+.+..|++.|+++.+ +... +.+... +..+ ..+.+.++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCc
Confidence 467777765 456788888999999999987 4432 344433 3333 3456777777654
No 337
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=34.57 E-value=3.7e+02 Score=30.63 Aligned_cols=59 Identities=15% Similarity=0.334 Sum_probs=32.5
Q ss_pred eeeccchHHHHHHHHHHHhcC----C--CeEEEee-chhhH-HHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 009809 245 CFDVGIAEQHAVTFAAGLACE----G--LKPFCAI-YSSFM-QRAYDQVVHDVDLQKLPVRFAMDRAGL 305 (525)
Q Consensus 245 ~~~~gIaE~~~~~~a~G~A~~----G--~~pi~~t-~~~F~-~~a~dqi~~~~~~~~~pvvi~~~~~G~ 305 (525)
.+.+|..= +.+++|.|+|++ | .+.++.+ -+.+- -.+||. ++.++..+.|++++..+-+.
T Consensus 140 ~~~~G~~g-~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ea-ln~a~~~~~~li~iv~~N~~ 206 (677)
T PLN02582 140 CFGTGHSS-TTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEA-MNNAGYLDSDMIVILNDNKQ 206 (677)
T ss_pred eeccchhh-hhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHH-HHHHHhhCcCEEEEEECCCC
Confidence 34454332 234555666553 4 3444333 22332 466676 46777778999998876553
No 338
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=34.05 E-value=1.9e+02 Score=22.71 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=36.5
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCC
Q 009809 390 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEG 449 (525)
Q Consensus 390 dv~iva~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~ 449 (525)
++.|+..+. ....+++.+..|++.|+.+.+-.. . +.+... +..+- .+.+.++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~-~-~~~~k~-~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR-E-RKIGKK-FREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC-C-cCHhHH-HHHHHhCCCCEEEEECCC
Confidence 467777765 456788888899999998887442 2 344443 33333 345677777764
No 339
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=33.83 E-value=1.1e+02 Score=26.10 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
....|.+|.+.|++.|+...++++.. .|++.+.|.++++..
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 9 GCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 45678889999999999999999875 788888888877643
No 340
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=33.49 E-value=1.2e+02 Score=27.70 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=35.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEc
Q 009809 388 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVE 447 (525)
Q Consensus 388 g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 447 (525)
|+++.||+.|.++.... ++.|.++|.++.+++-. .+.+.+.++.+.-||+.-
T Consensus 44 gk~vlViG~G~~~G~~~--a~~L~~~g~~V~v~~r~------~~~l~~~l~~aDiVIsat 95 (168)
T cd01080 44 GKKVVVVGRSNIVGKPL--AALLLNRNATVTVCHSK------TKNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCEEEEECCcHHHHHHH--HHHHhhCCCEEEEEECC------chhHHHHHhhCCEEEEcC
Confidence 56799999998866532 45677788888888743 245667777777666543
No 341
>PRK10853 putative reductase; Provisional
Probab=32.90 E-value=94 Score=26.67 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=35.4
Q ss_pred ech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 396 YGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 396 ~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
||. ....+.+|.+.|++.|+.+.++|+.. .|++.+.|.++++.
T Consensus 5 y~~~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~ 48 (118)
T PRK10853 5 YGIKNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDE 48 (118)
T ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHH
Confidence 444 35788899999999999999999875 78899988887754
No 342
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=32.10 E-value=1e+02 Score=26.74 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEc
Q 009809 397 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVE 447 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 447 (525)
|++-..|.+.++.|+++|+++.++++....+ . +.+ +...+.++++-
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~~~~~~~---~-~~~-~~~~~~~i~~~ 53 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVDLDDFDD---S-PSD-LSEYDLLIFGV 53 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEEGGGSCH---H-HHH-HCTTSEEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCceeeechhhhhh---h-hhh-hhhhceeeEee
Confidence 3444555666677778899999999876542 2 333 33445555544
No 343
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.97 E-value=2.6e+02 Score=25.18 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=36.5
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC----CeEEEEcCCCCCCHHHHHHH
Q 009809 390 RVALLGYG-TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 390 dv~iva~G-~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~----~~vvvvE~~~~gglg~~v~~ 460 (525)
+|.||.-| +-...+.++.+.|++-|+..++ ++.+..--+.+ +.+++++. -.+++.=.+..++|...++.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~-l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~ 75 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV-RVASAHRTPER-LLEFVKEYEARGADVIIAVAGMSAALPGVVAS 75 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE-EE--TTTSHHH-HHHHHHHTTTTTESEEEEEEESS--HHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHH-HHHHHHHhccCCCEEEEEECCCcccchhhhee
Confidence 34444433 3468888999999998987764 44444444433 34444322 13455544556777766654
No 344
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=31.84 E-value=1.9e+02 Score=26.47 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=42.9
Q ss_pred EEEEech----hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHc
Q 009809 392 ALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQD 465 (525)
Q Consensus 392 ~iva~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~ 465 (525)
+||.|++ +-..|...|..|++.|+.|++.++.-+.-. .++....||+ -.+. .|-+.+.+.+.+.++
T Consensus 3 ~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~-------~l~~ydavVI-gAsI~~~h~~~~~~~Fv~k~ 73 (175)
T COG4635 3 TLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEP-------ALEDYDAVVI-GASIRYGHFHEAVQSFVKKH 73 (175)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhcc-------ChhhCceEEE-ecchhhhhhHHHHHHHHHHH
Confidence 4666655 445555667788999999999997643321 2345666554 4444 687887777766654
No 345
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.72 E-value=5.8e+02 Score=26.18 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=45.0
Q ss_pred EEEEEechh-HHHHHHHHHHHHhCCCc---EEEEeccccccCcHH-----HHHHHhccCCeEEEEcCCCCCCHHHHHHH
Q 009809 391 VALLGYGTA-VQSCLAASALLESNGLR---LTVADARFCKPLDHA-----LIRSLAKSHEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 391 v~iva~G~~-~~~a~~Aa~~L~~~Gi~---v~vi~~~~l~P~d~~-----~i~~~~~~~~~vvvvE~~~~gglg~~v~~ 460 (525)
=+|+++|.. ..+..+|++.+++.|.+ +-+++|.+-.|-+.+ .|..+-+..+..|-.-+|.. |....+++
T Consensus 135 PvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~-G~~~~~aA 212 (329)
T TIGR03569 135 PVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL-GIEAPIAA 212 (329)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc-cHHHHHHH
Confidence 368888864 58899999999888864 999999988886653 33322233443444556654 45444444
No 346
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=31.47 E-value=2.1e+02 Score=26.87 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=50.3
Q ss_pred echhHHHHHHHHHHHHhCCCcEEEEecccc--ccC----------------c-HHHHHHHhccCCeEEEEcCCCCCCHHH
Q 009809 396 YGTAVQSCLAASALLESNGLRLTVADARFC--KPL----------------D-HALIRSLAKSHEVLITVEEGSIGGFGS 456 (525)
Q Consensus 396 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l--~P~----------------d-~~~i~~~~~~~~~vvvvE~~~~gglg~ 456 (525)
+|.+...+..+++.+++.|.++++++++-. +|- | .+.|.+.+..+..+|+.=.-+.|++.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 577888888888888888999999999754 331 2 345555566677777655555788988
Q ss_pred HHHHHHHH
Q 009809 457 HVVQFLAQ 464 (525)
Q Consensus 457 ~v~~~l~~ 464 (525)
.+..++-+
T Consensus 93 ~~K~fiDR 100 (207)
T COG0655 93 QMKAFIDR 100 (207)
T ss_pred HHHHHHhh
Confidence 88777765
No 347
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=30.68 E-value=82 Score=26.94 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=27.1
Q ss_pred eCCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEecc
Q 009809 387 EGERVALLGYGTAV-QSCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 387 ~g~dv~iva~G~~~-~~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
...++.||++|... ..--+..+.|+++||.+++.+.+
T Consensus 53 ~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 53 PRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred CCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 35679999999864 23334557788899999999853
No 348
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=30.43 E-value=1e+02 Score=34.77 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=23.5
Q ss_pred ccccccchhHHHHHhccccCCCEEEEEECCC
Q 009809 20 DGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50 (525)
Q Consensus 20 DG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~ 50 (525)
-..|.+ ..++++.+++..++|+++|.-..+
T Consensus 428 f~~F~~-r~~~~ir~~a~~~lpV~~v~th~g 457 (653)
T TIGR00232 428 FLMFVD-YARPAIRLAALMKLPVIYVYTHDS 457 (653)
T ss_pred hHHHHH-HHHHHHHHHHhcCCCEEEEEeCCc
Confidence 345654 678889999999999999996655
No 349
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=30.16 E-value=1.4e+02 Score=25.64 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 400 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 400 ~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
...+.+|.+.|++.||...+++... .|.+.+.|.++++..
T Consensus 11 C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~ 50 (117)
T COG1393 11 CSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKL 50 (117)
T ss_pred ChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHc
Confidence 4688999999999999999999754 688888887777544
No 350
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=29.82 E-value=52 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.3
Q ss_pred CChHHHHHHcCCCHHHHHHHHHHHhh
Q 009809 487 GSPADQLAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 487 g~~~~l~~~~gl~~~~I~~~i~~~l~ 512 (525)
+....+++.+|++++.+.+++++.++
T Consensus 28 ~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 28 SIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 34778999999999999999988764
No 351
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=29.74 E-value=2.2e+02 Score=31.37 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=32.4
Q ss_pred eEEeecCCccCCCCChH-HHHHHcCCCHHHHHHHHHHHh---hcccccccccccCC
Q 009809 474 WRPLVLPDRYIDHGSPA-DQLAQAGLTPSHIAATVFNIL---GQTREALEIMSFKS 525 (525)
Q Consensus 474 ~~~ig~~d~~~~~g~~~-~l~~~~gl~~~~I~~~i~~~l---~~~~~~~~~~~~~~ 525 (525)
..|||++ +||.. +++++||-+|+.+++.+.+++ .+...-.-+.|.||
T Consensus 160 ~IRIGvN-----~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~Ks 210 (606)
T PRK00694 160 AMRIGVN-----HGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKS 210 (606)
T ss_pred CEEEecC-----CcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc
Confidence 4688874 45544 888999999999999997764 44444444455553
No 352
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=29.55 E-value=1.4e+02 Score=22.61 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCC-CCCCHH
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFG 455 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~-~~gglg 455 (525)
.....|..|.+.|++.|+..+.+++.. .|-..+.+.+.-...=++++++.. ..+|+.
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccC
Confidence 345788888888999999999999864 222223333221123356777543 346654
No 353
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=29.54 E-value=1.3e+02 Score=31.49 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=51.5
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcC-CC-CCCHH--HHHHHHHHHcC
Q 009809 392 ALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE-GS-IGGFG--SHVVQFLAQDG 466 (525)
Q Consensus 392 ~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~-~~-~gglg--~~v~~~l~~~~ 466 (525)
=||++-..-..+++.++.|+.+|.+|+.+.+..==-++.+.|++.++....+|.+=- |. +|-+- .+|.+.+.+++
T Consensus 93 HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~ 171 (386)
T COG1104 93 HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG 171 (386)
T ss_pred eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC
Confidence 367777777888899999977899999998876444677888888876555555443 22 45432 45556666554
No 354
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=29.43 E-value=1.3e+02 Score=27.61 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.8
Q ss_pred CceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEE
Q 009809 127 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 162 (525)
Q Consensus 127 g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v 162 (525)
|+.++.+ .|..+...+++.+.+ .++|+++.-
T Consensus 135 g~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~e 165 (167)
T cd07036 135 GLKVVAP---STPYDAKGLLKAAIR--DDDPVIFLE 165 (167)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEEe
Confidence 7777767 788888899998887 578998753
No 355
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=29.40 E-value=45 Score=28.16 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=25.2
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhCCCcEEEEecc
Q 009809 387 EGERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 387 ~g~dv~iva~G~~~~-~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
...++.||++|.... .-.+..+.|+++||.+++.+.+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 367999999998643 3335567788899999999853
No 356
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=29.37 E-value=3.2e+02 Score=25.93 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcc---eEEeecCCccCCCCChHHHHH
Q 009809 430 HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVK---WRPLVLPDRYIDHGSPADQLA 494 (525)
Q Consensus 430 ~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~---~~~ig~~d~~~~~g~~~~l~~ 494 (525)
.+.+..+.+....+++.+.. ..+ ..+++.|.+.++.. ..+ +.++|.++..+..++.+++.+
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~--~~~-~~i~~~L~~~g~~~-~~~v~v~~~l~~~~E~i~~~~l~~l~~ 208 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSA--HIL-DKVVKELIEGGYSE-DTPVAVVYRATWPDEKIVRGTLADLAD 208 (229)
T ss_pred hHHHHHHhcCCCeEEEECcH--HHH-HHHHHHHHHcCcCC-CCcEEEEEeCCCCCcEEEEEEHHHHHH
Confidence 44566666655677777754 233 56777787776531 222 246677766665555555443
No 357
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=29.16 E-value=1.3e+02 Score=25.42 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
....+.+|.+.|++.|+.+..+|+.. .|++.+.+.++++..
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~ 48 (112)
T cd03034 8 RCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKL 48 (112)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHc
Confidence 45788899999999999999999865 788888887777543
No 358
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=28.87 E-value=1.3e+02 Score=25.52 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
....+++|.+.|++.|+++..+++.. .|+..+.+.++++..
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKL 48 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHc
Confidence 45788899999999999999999865 788888888877654
No 359
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=28.55 E-value=2.3e+02 Score=25.06 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=33.2
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCC--CcEEEEeccccccCcHHHHHHHhccCCeEEEEcCC
Q 009809 391 VALLGYGTAV----QSCLAASALLESNG--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 449 (525)
Q Consensus 391 v~iva~G~~~----~~a~~Aa~~L~~~G--i~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~ 449 (525)
++|+++|+.. ..-..+++.|++.. -.+++++..+.- .+ +...+.+.+.+|+||..
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~-l~~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---ME-VMFRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HH-HHHHhcCCCEEEEEEeC
Confidence 3577888765 23445666776543 347888887653 22 23334566778888763
No 360
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=28.41 E-value=1.6e+02 Score=32.31 Aligned_cols=106 Identities=25% Similarity=0.363 Sum_probs=66.8
Q ss_pred CCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHH
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 89 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 89 (525)
.|=+|+++.+|-+... ++.||+.+|..-+-|+++-++--.. +-.+ + ..+
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiDk----------p~a~---p-------------ekv---- 273 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKIDK----------PGAN---P-------------EKV---- 273 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEeccCC----------CCCC---H-------------HHH----
Confidence 4557788888888764 6999999999999999988854332 1011 1 000
Q ss_pred hhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEee----ccCCCCHHHHHHHHH------HhhhcCCCCC--
Q 009809 90 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIG----PVDGHNVDDLVAILE------EVKNTKTTGP-- 157 (525)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~dG~d~~~l~~al~------~a~~~~~~~P-- 157 (525)
++++... .-..+++|-.+.- ..-|.|++.|.+|+- ..++. ..+|
T Consensus 274 ----------~~eL~~~-------------gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~-p~g~~e 329 (683)
T KOG1145|consen 274 ----------KRELLSQ-------------GIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKAD-PKGPAE 329 (683)
T ss_pred ----------HHHHHHc-------------CccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccC-CCCCce
Confidence 0111110 0125677765542 357999999998754 22332 3445
Q ss_pred -EEEEEEccCCCCc
Q 009809 158 -VLIHVVTEKGRGY 170 (525)
Q Consensus 158 -~~i~v~t~kg~g~ 170 (525)
++|+-.+.||+|.
T Consensus 330 g~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 330 GWVIESSVDKGRGP 343 (683)
T ss_pred EEEEEeeecCCccc
Confidence 7999999999995
No 361
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=28.24 E-value=1e+02 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=26.0
Q ss_pred EEEEEechh--HHHHHHHHHHHHhCCCcEEEEeccc
Q 009809 391 VALLGYGTA--VQSCLAASALLESNGLRLTVADARF 424 (525)
Q Consensus 391 v~iva~G~~--~~~a~~Aa~~L~~~Gi~v~vi~~~~ 424 (525)
++|++.|+. +...+..++.|+++|.+|.+...+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 467777774 6788888999999999999877543
No 362
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=28.19 E-value=1.2e+02 Score=26.25 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccC
Q 009809 405 AASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYI 484 (525)
Q Consensus 405 ~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~ 484 (525)
.|++.|++.||++.--.. +.++.+. +.....||+++++.. ++...+ ..........++|-++
T Consensus 42 ~a~~~l~e~Gid~~~~~~---~~l~~~~----~~~~D~vitm~~~~~-----~~~~~~------p~~~~~~~w~i~DP~~ 103 (129)
T TIGR02691 42 NAVKAMKEVGIDISNQTS---DLIDLDI----LNKADLVVTLCGDAR-----DKCPAT------PPHVKREHWGLDDPAR 103 (129)
T ss_pred HHHHHHHHcCCCcCCccc---ccCChhh----cccCCEEEEeCchhc-----cCCCcc------CCCCeEEECCCCCCCC
Confidence 455667778987643222 2233322 245678888875421 000000 0112223457788777
Q ss_pred CCCChHHHHHHcCCCHHHHHHHHHH
Q 009809 485 DHGSPADQLAQAGLTPSHIAATVFN 509 (525)
Q Consensus 485 ~~g~~~~l~~~~gl~~~~I~~~i~~ 509 (525)
..|+.++.++.|.-..+.|..+++.
T Consensus 104 ~~g~~~~~~~~~~~~~~~I~~~v~~ 128 (129)
T TIGR02691 104 AEGTEEEKWAVFRRVRDEIKERVKD 128 (129)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888877777777777654
No 363
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=27.50 E-value=2.4e+02 Score=26.37 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccC----------cHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHH
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPL----------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~----------d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l 462 (525)
..+..+++.|++.|.+++++++..+.+- +.+.+.+.++.+..+|++=--+.+++...+..++
T Consensus 18 ~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~i 89 (191)
T PRK10569 18 ALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHH
Confidence 3444556778888999999998754331 2234445566677777776655677776666655
No 364
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=27.47 E-value=3.1e+02 Score=28.02 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=47.1
Q ss_pred EeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC-CeEEEEcCC-CCCCHHHHH
Q 009809 385 LIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH-EVLITVEEG-SIGGFGSHV 458 (525)
Q Consensus 385 l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~-~~vvvvE~~-~~gglg~~v 458 (525)
+..|..+.++.+|.--.. |++.++.-|.+|.++-...=.-.+.|.|.+.+..+ .++|+|-.+ ++.|.-..+
T Consensus 89 lePgd~vLv~~~G~wg~r---a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 89 LEPGDNVLVVSTGTWGQR---AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred cCCCCeEEEEEechHHHH---HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchH
Confidence 446778999999988776 45666666999999966555557888888766544 344444433 344554443
No 365
>PRK10824 glutaredoxin-4; Provisional
Probab=27.38 E-value=1.6e+02 Score=25.13 Aligned_cols=69 Identities=19% Similarity=0.140 Sum_probs=43.4
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHH
Q 009809 388 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 388 g~dv~iva~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~ 457 (525)
..+|+|++-|+ ....|..|.+.|.+.|++..++++-. .|=-.+.+.+.-. .+=+-|.|.....||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHH
Confidence 45788888884 67888889999999999999998743 1111122222221 2224455665556887644
No 366
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.32 E-value=3e+02 Score=30.37 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEE--------ecccc-------------ccCcHHHHHHHhccCCeEEE
Q 009809 388 GERVALLGYGTAV-QSCLAASALLESNGLRLTVA--------DARFC-------------KPLDHALIRSLAKSHEVLIT 445 (525)
Q Consensus 388 g~dv~iva~G~~~-~~a~~Aa~~L~~~Gi~v~vi--------~~~~l-------------~P~d~~~i~~~~~~~~~vvv 445 (525)
+.+..+|+..+.. .+..+..+.|.+.|+++.++ ....+ .|.|.+.+...+++ |.|+
T Consensus 177 ~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~g-K~vL- 254 (588)
T COG1086 177 GIQLILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKDLNGQLREIEIEDLLGRPPVALDTELIGAMLTG-KTVL- 254 (588)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHHhccccccCCHHHHhCCCCCCCCHHHHHhHcCC-CEEE-
Confidence 4456777777765 45556677888888888877 22222 23455556666643 3444
Q ss_pred EcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCC
Q 009809 446 VEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID 485 (525)
Q Consensus 446 vE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~ 485 (525)
|- +-.|++|++++..+.+.+ |.++.-++ .|.+..
T Consensus 255 VT-GagGSiGsel~~qil~~~----p~~i~l~~-~~E~~~ 288 (588)
T COG1086 255 VT-GGGGSIGSELCRQILKFN----PKEIILFS-RDEYKL 288 (588)
T ss_pred Ee-CCCCcHHHHHHHHHHhcC----CCEEEEec-CchHHH
Confidence 33 346999999999988764 55666666 455543
No 367
>PRK10026 arsenate reductase; Provisional
Probab=27.17 E-value=1.6e+02 Score=26.15 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
.....+++|.+.|++.|+.+.++++.. .|++.+.|..+++..
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADM 51 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhC
Confidence 346788999999999999999999875 788888888877643
No 368
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=26.97 E-value=2.7e+02 Score=24.63 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=32.9
Q ss_pred EEEEEechhH----HHHHHHHHHHHhC---CCcEEEEeccccccCcHHHHHHHhccCCeEEEEcC
Q 009809 391 VALLGYGTAV----QSCLAASALLESN---GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 448 (525)
Q Consensus 391 v~iva~G~~~----~~a~~Aa~~L~~~---Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~ 448 (525)
++|+++|+.. ..-..+++.|+++ .-.+.++++.+.- .+ +...+.+++.+|+||.
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~-l~~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LE-LLPYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HH-HHHHHhcCCEEEEEEc
Confidence 3578888765 2344556667654 3458888887642 22 2333456678888886
No 369
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=26.83 E-value=2.8e+02 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=31.8
Q ss_pred eEEeecCCccCCCCChH-HHHHHcCCCHHHHHHHHHHHh---hcccccccccccC
Q 009809 474 WRPLVLPDRYIDHGSPA-DQLAQAGLTPSHIAATVFNIL---GQTREALEIMSFK 524 (525)
Q Consensus 474 ~~~ig~~d~~~~~g~~~-~l~~~~gl~~~~I~~~i~~~l---~~~~~~~~~~~~~ 524 (525)
..|||++ +||.+ +++++||-+|+.+++.+.+++ .+...-.-+.|.|
T Consensus 156 ~iRIGvN-----~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~K 205 (611)
T PRK02048 156 AIRIGVN-----HGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIK 205 (611)
T ss_pred CEEEecC-----CcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 4678874 45544 888999999999999997764 4444444444544
No 370
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=25.98 E-value=1.7e+02 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=25.6
Q ss_pred eEEEEEcccccccchhHHHHHhccccCCCEEEEEECCC
Q 009809 13 NVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50 (525)
Q Consensus 13 ~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~ 50 (525)
.++...|-|..+ ...+|-.|...+.|+++|+-+-.
T Consensus 67 v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 67 AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 455556777775 67777778777899999995543
No 371
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.77 E-value=5.4e+02 Score=25.01 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=41.8
Q ss_pred cCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcC--C-----C
Q 009809 427 PLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG--L-----T 499 (525)
Q Consensus 427 P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~g--l-----~ 499 (525)
+++.+.+.+++..+.-++..- ...|++.-+.+++.- ..|+. +- ..+...++.+... + +
T Consensus 266 ~~~~~~~~~~~~~ad~~i~~~--~~~~~~~~~~Ea~~~------G~pvI--~~-----~~~~~~~~~~~~~~g~~~~~~~ 330 (377)
T cd03798 266 AVPHEEVPAYYAAADVFVLPS--LREGFGLVLLEAMAC------GLPVV--AT-----DVGGIPEIITDGENGLLVPPGD 330 (377)
T ss_pred CCCHHHHHHHHHhcCeeecch--hhccCChHHHHHHhc------CCCEE--Ee-----cCCChHHHhcCCcceeEECCCC
Confidence 456677777777776444322 125566666666652 23332 21 1233445554433 2 7
Q ss_pred HHHHHHHHHHHhhccc
Q 009809 500 PSHIAATVFNILGQTR 515 (525)
Q Consensus 500 ~~~I~~~i~~~l~~~~ 515 (525)
++++++++.+++....
T Consensus 331 ~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 331 PEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHHHHhcCcH
Confidence 8899999999886644
No 372
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=25.23 E-value=2.6e+02 Score=24.34 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEee------
Q 009809 405 AASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLV------ 478 (525)
Q Consensus 405 ~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig------ 478 (525)
.|.+.|++.|+++.- ..-++++... +.....||++++.. . ..+..... ....++..++
T Consensus 49 ~a~~~l~~~Gid~s~---h~s~~l~~~~----~~~aDlIi~m~~~~----~----~~~~~~~~-~~~~~v~~~~~~~~~~ 112 (141)
T cd00115 49 RAIAVLAEHGIDISG---HRARQLTEDD----FDEFDLIITMDESN----L----AELLEPPP-GGRAKVELLGEYAGDR 112 (141)
T ss_pred HHHHHHHHcCCCccc---CeeeeCCHHH----HHhCCEEEEECHHH----H----HHHHhcCC-CCcceEEeHhhhCcCC
Confidence 345566777888633 3445555543 33567899988753 1 11211111 1123556666
Q ss_pred -cCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 479 -LPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 479 -~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
++|-|+.+ ++.|.-..+.|.+++++++
T Consensus 113 ~i~DP~~~~------~~~f~~~~~~I~~~v~~l~ 140 (141)
T cd00115 113 EVPDPYYGS------LEAFEEVYDLIEEAIKALL 140 (141)
T ss_pred CCCCCCCCC------hHHHHHHHHHHHHHHHHHh
Confidence 66655542 3334455677777777665
No 373
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.10 E-value=2e+02 Score=26.13 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=29.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHH
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA 431 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~ 431 (525)
+++++.|..-...+-++..|.++|++|.|+-+.-..+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~ 69 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSED 69 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHH
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHH
Confidence 45777778888899999999999999999655444445443
No 374
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=24.92 E-value=4.1e+02 Score=26.65 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc-CCeEEEEcCCCCCCHHHHHHHHHHHcC
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDG 466 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~-~~~vvvvE~~~~gglg~~v~~~l~~~~ 466 (525)
.+..+.||.++. |.++.||.++ -||-.+.+.++++. -+.++++-||..--=.-.+..++.+.+
T Consensus 53 Vf~tV~EA~~~~---~a~~svI~Vp--~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g 116 (293)
T COG0074 53 VFNTVEEAVKET---GANASVIFVP--PPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG 116 (293)
T ss_pred HHHHHHHHHHhh---CCCEEEEecC--cHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 345666666543 7889999987 46777888888876 578888888874222334445555544
No 375
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=24.85 E-value=5.5e+02 Score=25.04 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=35.0
Q ss_pred HHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCC-CCcc-eEEeecCCccCCCCChHHHH
Q 009809 431 ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD-GTVK-WRPLVLPDRYIDHGSPADQL 493 (525)
Q Consensus 431 ~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~-~~~~-~~~ig~~d~~~~~g~~~~l~ 493 (525)
+.+..+.+....+|++.... . -..+++.|.+.++.. .+.- ..++|.++..+..++.+++.
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~--~-~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~ 216 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQ--R-IHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIA 216 (257)
T ss_pred hhHHHHhcCCCeEEEECCch--h-HHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHH
Confidence 45666666666777777432 2 456777787777631 1122 24677777666556555553
No 376
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=24.74 E-value=3.4e+02 Score=26.49 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCC--CcEEEEe-cccc-ccCcHHHHHHHhccCCeEEEEcCCCC
Q 009809 388 GERVALLGYGTAVQSCLAASALLESNG--LRLTVAD-ARFC-KPLDHALIRSLAKSHEVLITVEEGSI 451 (525)
Q Consensus 388 g~dv~iva~G~~~~~a~~Aa~~L~~~G--i~v~vi~-~~~l-~P~d~~~i~~~~~~~~~vvvvE~~~~ 451 (525)
+..+.+|+-|+.+......++.+.+.| -++.++- .++- ..+..+.+.++..+ ...+++++++.
T Consensus 107 ~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~~ 173 (252)
T COG0543 107 GKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGWK 173 (252)
T ss_pred CCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCCC
Confidence 344999999999999999999998878 6666655 2321 12344566665543 56677776553
No 377
>PRK10329 glutaredoxin-like protein; Provisional
Probab=24.67 E-value=1.9e+02 Score=22.80 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=36.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh--c-cCCeEEEEcCCCCCCHH
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--K-SHEVLITVEEGSIGGFG 455 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~--~-~~~~vvvvE~~~~gglg 455 (525)
++|.+. .....|..+.+.|++.||....+++.. +.+...++. . ..=++|++++....|+.
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCC
Confidence 444443 455788888888999999999999864 233322222 1 12256666665545554
No 378
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=24.63 E-value=4.1e+02 Score=23.03 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=36.2
Q ss_pred cEEEEEechhHHHHH----HHHHHHHhC-CCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEc
Q 009809 390 RVALLGYGTAVQSCL----AASALLESN-GLRLTVADARFCKPLDHALIRSLAK-SHEVLITVE 447 (525)
Q Consensus 390 dv~iva~G~~~~~a~----~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE 447 (525)
-+.||+-||--.... +.++.++++ ++.+.+--+-.-.|--.+.+.++.+ ++++++|+-
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvP 65 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIAL 65 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEeh
Confidence 367899998654444 445556443 5555444443446766778888764 568888884
No 379
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=24.59 E-value=1.9e+02 Score=24.39 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
.....|.+|.+.|++.|+....+++.. .|.+.+.+.++++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHH
Confidence 456888999999999999999999854 77888888777764
No 380
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=24.47 E-value=2e+02 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
.....|.+|.+.|++.|+...++++.. .|++.+.|.++++..
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 456788899999999999999999864 788888888777543
No 381
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.10 E-value=2.2e+02 Score=22.38 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=38.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcH-HHHHHHh-ccCCeEEEEcCCCCCC
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH-ALIRSLA-KSHEVLITVEEGSIGG 453 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~-~~i~~~~-~~~~~vvvvE~~~~gg 453 (525)
++|.+. +....|..|.+.|.+.|+....+++..-.+-.. +.+.+.- ..+=++|++.+...||
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 344443 336778888889999999999999876444122 3333331 2334677777754444
No 382
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=23.89 E-value=1.2e+02 Score=26.92 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=22.6
Q ss_pred cccccccchhHHHHHhccccCCCEEEEEECCC
Q 009809 19 GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 50 (525)
Q Consensus 19 GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~ 50 (525)
|=|.+ ...+++-.|...+.|+++|.-+..
T Consensus 68 gpG~~---n~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 68 GPGLT---NAVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred CCcHH---HHHHHHHHHHhhCCCEEEEeCCCc
Confidence 55555 477888888888999999996554
No 383
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=23.76 E-value=1.2e+02 Score=25.63 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=26.6
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEecc
Q 009809 389 ERVALLGYGTAV-QSCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 389 ~dv~iva~G~~~-~~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
.++.||++|... ..-.+..+.|++.||.+++.+..
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 789999999854 23334567788899999999863
No 384
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=23.74 E-value=2.7e+02 Score=25.65 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecCCCCC--------CcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHH
Q 009809 336 EAELFHMVATAAAIDDRPSCFRYPRGNGI--------GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAAS 407 (525)
Q Consensus 336 ~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~--------~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa 407 (525)
-+|+..++.+|+- .++-+|+.-...+.. ..++|.. ....-..++...+.+-..|.|++-.+.-..+.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~Em~~v~~~Al~g~E~l~~~-k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFGEMEAVEAEALYGAEPLPSA-KRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-GGGGGGHHHHHCSTT--TTE-EE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecChHHHHHHHHHcCCCCCchh-hcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 4678889988864 677788754332210 0011100 00000011111233345788999998888999999
Q ss_pred HHHHhCCCcEEEEeccccccCcHHHHHHH------hccCCeEEEEcCCCCCCHHHHHH
Q 009809 408 ALLESNGLRLTVADARFCKPLDHALIRSL------AKSHEVLITVEEGSIGGFGSHVV 459 (525)
Q Consensus 408 ~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~------~~~~~~vvvvE~~~~gglg~~v~ 459 (525)
++|.++|+.+-+|+. ..| +...+.+. .+..+.+|=-|++..-|+.+.++
T Consensus 102 ~~L~~~gi~~v~Vs~--~~~-~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a 156 (172)
T PF10740_consen 102 KQLIEQGIPFVGVSP--NKP-DEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMA 156 (172)
T ss_dssp HHHHHHT--EEEEE---SS----TTGGG-SSS-EE----S-SEE-TTS-EE---HHHH
T ss_pred HHHHHCCCCEEEEEe--cCC-CCCchhhhhhheeecccCCCcccCCCCCEecchHHHH
Confidence 999999999999982 122 11112221 12335667666665556655543
No 385
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=23.71 E-value=2.9e+02 Score=25.83 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=38.1
Q ss_pred EEEEEechhH--HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc-----CCeEEEEcCCC
Q 009809 391 VALLGYGTAV--QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS-----HEVLITVEEGS 450 (525)
Q Consensus 391 v~iva~G~~~--~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvE~~~ 450 (525)
+++++.+... ..+.++++.|+++||.+.+|.+-...+= .+.++.+++. ..++|++-.+.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~-~~~l~~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDN-TEKLTAFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCC-HHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 5566666433 4566888999999999999999876432 2333333322 25677776643
No 386
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=23.70 E-value=2.2e+02 Score=27.28 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=61.1
Q ss_pred hhhhcCCCcEEE-ccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccC-ceEEEeeCCcEEEEEec
Q 009809 320 TFMACLPNMVVM-APSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVG-KGRILIEGERVALLGYG 397 (525)
Q Consensus 320 ~~~~~ipg~~v~-~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g-~~~~l~~g~dv~iva~G 397 (525)
.++..+||..++ ...+.+|+..++..- .|-.|.++-- +|+. ...++- ..+--....||.+|+.-
T Consensus 18 ~yv~~~~gF~~vg~A~~~~ea~~~i~~~-----~pDLILLDiY------mPd~---~Gi~lL~~ir~~~~~~DVI~iTAA 83 (224)
T COG4565 18 RYVKQIPGFSVVGTAGTLEEAKMIIEEF-----KPDLILLDIY------MPDG---NGIELLPELRSQHYPVDVIVITAA 83 (224)
T ss_pred HHHHhCCCceEEEeeccHHHHHHHHHhh-----CCCEEEEeec------cCCC---ccHHHHHHHHhcCCCCCEEEEecc
Confidence 467889998766 667788888777532 4666666542 2321 111111 11111224689999988
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
+-...+.+|.. .+++|- -||||..+.+.+.+..
T Consensus 84 ~d~~tI~~alr--------~Gv~DY-LiKPf~~eRl~~aL~~ 116 (224)
T COG4565 84 SDMETIKEALR--------YGVVDY-LIKPFTFERLQQALTR 116 (224)
T ss_pred chHHHHHHHHh--------cCchhh-eecceeHHHHHHHHHH
Confidence 88888777643 678884 5899999888776643
No 387
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=23.67 E-value=2.8e+02 Score=32.25 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCCC--CC--C---CCCCCCc---chh--hhhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 009809 279 QRAYDQVVHDVDLQKLPVRFAMDRAG--LV--G---ADGPTHC---GSF--DVTFMACLPNMVVMAPSDEAELFHMVATA 346 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~pvvi~~~~~G--~~--g---~~G~tH~---~~~--d~~~~~~ipg~~v~~P~~~~e~~~~~~~a 346 (525)
.|.|+|+..+..+-+.|++++=...+ +. + ..+..|. .+. -..+...+|++.|+...+|.|+..++...
T Consensus 644 gRL~~Q~~~m~~~Y~~PvLLIE~d~~~~f~l~~~~~~~~~~~~~~~~i~~~L~~L~l~fP~l~IiwS~s~~~TA~i~~~L 723 (814)
T TIGR00596 644 GRLYNQCEKMLRYYAYPVLLIEFDQNKSFSLEPRNDLSQEISSVNNDIQQKLALLTLHFPKLRIIWSSSPYATAEIFEEL 723 (814)
T ss_pred chHHHHHHHHHHhcCCcEEEEEecCCcccccccccccccccCccHHHHHHHHHHHHHhcCCceEEecCCHHHHHHHHHHH
Confidence 48999988888888999999864432 11 1 0222333 111 12345578999999999999999999776
Q ss_pred Hh
Q 009809 347 AA 348 (525)
Q Consensus 347 ~~ 348 (525)
-.
T Consensus 724 k~ 725 (814)
T TIGR00596 724 KL 725 (814)
T ss_pred Hh
Confidence 33
No 388
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=23.60 E-value=3.3e+02 Score=25.63 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=36.2
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhC---CCcEEEEeccccccCcHHHHHHHhccCCeEEEEcC
Q 009809 389 ERVALLGYGTAV----QSCLAASALLESN---GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 448 (525)
Q Consensus 389 ~dv~iva~G~~~----~~a~~Aa~~L~~~---Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~ 448 (525)
.+++|++.|+.. ..-..+++.|+++ .-.+++++.-+.-+ .+...+...+.+|+||.
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~----~ll~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL----NLLGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHHcCCCEEEEEEC
Confidence 358899999866 2444567777653 23488999877532 23344556777887774
No 389
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=23.58 E-value=2.3e+02 Score=25.78 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=32.2
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhCCC---cEEEEeccccccCcHHHHHHHhccCCeEEEEcC
Q 009809 390 RVALLGYGTAVQ----SCLAASALLESNGL---RLTVADARFCKPLDHALIRSLAKSHEVLITVEE 448 (525)
Q Consensus 390 dv~iva~G~~~~----~a~~Aa~~L~~~Gi---~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~ 448 (525)
.++|+++|+... .-...+++|++... ++.|++.-+.-|. +...+...+++|+||.
T Consensus 3 ~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDa 64 (160)
T COG0680 3 RILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDA 64 (160)
T ss_pred eEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEe
Confidence 577888888441 22234556655433 6889998876442 2333445556777763
No 390
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=23.50 E-value=37 Score=30.78 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=39.6
Q ss_pred EEEEEechhHH-HHHHHHH-HHHhCCC-cEEEEeccccccCc------HHHHHHHhccCCeEEEEcCCC-CCCHHHHHHH
Q 009809 391 VALLGYGTAVQ-SCLAASA-LLESNGL-RLTVADARFCKPLD------HALIRSLAKSHEVLITVEEGS-IGGFGSHVVQ 460 (525)
Q Consensus 391 v~iva~G~~~~-~a~~Aa~-~L~~~Gi-~v~vi~~~~l~P~d------~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~ 460 (525)
-+.+++|...+ .=+.+.+ .|++.|| ++.++.+.||-|=. +|.+.+ ++...-|.+|..+. +.+-|..|+.
T Consensus 8 kvf~t~G~Ge~~t~L~aFd~AL~dAgI~~~NLV~vSSIlPp~~~~V~~e~gl~k-l~pG~iv~~V~Ar~~S~~~G~~isa 86 (163)
T COG1945 8 KVFFTSGVGEGDTELNAFDAALLDAGIENFNLVPVSSILPPNCEIVDPEDGLPK-LPPGAILFCVMARGTSNEPGRTISA 86 (163)
T ss_pred eEEEEeccccCCchhHhHHHHHHhCCCcccceEEEecccCCcccccchhhcCCc-CCCCcEEeEEEeecccCCCCceeee
Confidence 35666676542 2233333 4677787 79999999999922 233334 44445566666654 4555545443
No 391
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=23.43 E-value=3e+02 Score=24.89 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccc--C--------cHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHH
Q 009809 400 VQSCLAASALLESNGLRLTVADARFCKP--L--------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 463 (525)
Q Consensus 400 ~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P--~--------d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~ 463 (525)
...+..+++.+++.|.+++++++.-+.. + +.+.+.+.+..+..+|++=--+.+++.+.+..++-
T Consensus 16 ~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD 89 (171)
T TIGR03567 16 SALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALLD 89 (171)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHHH
Confidence 3445555667777799999998764321 1 12344555666777777766666778777776664
No 392
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=23.02 E-value=1.9e+02 Score=23.73 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
.....|.+|.+.|++.|+....+++.. .|...+.+.++.+.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~ 47 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAK 47 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHh
Confidence 346788899999999999999999863 67788888777654
No 393
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=22.96 E-value=2.8e+02 Score=27.48 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCC---eEEEEcCCC--CCCC--CCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc---
Q 009809 280 RAYDQVVHDVDLQKLP---VRFAMDRAG--LVGA--DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI--- 349 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~p---vvi~~~~~G--~~g~--~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~--- 349 (525)
..+|. +|.+...++| +++++.+-+ ++.+ ...+-..+.|.+-.-.+|.+ .+.-.|+..+...++.|++.
T Consensus 157 ~~~Ea-lNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~ 234 (265)
T cd02016 157 VVYET-LNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIF-HVNGDDPEAVVRATRLALEYRQK 234 (265)
T ss_pred hHHHH-HHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHh
Confidence 34444 6778888998 888774433 3211 11112224454444467766 45888999999999888752
Q ss_pred CCCcEEEEe
Q 009809 350 DDRPSCFRY 358 (525)
Q Consensus 350 ~~~Pv~i~~ 358 (525)
.++|++|-.
T Consensus 235 g~gp~lIe~ 243 (265)
T cd02016 235 FKKDVVIDL 243 (265)
T ss_pred cCCCEEEEE
Confidence 467988643
No 394
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=22.80 E-value=2.5e+02 Score=21.06 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC
Q 009809 405 AASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 450 (525)
Q Consensus 405 ~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~ 450 (525)
...+.|++.|++++.+.- |++ .+. .....+|++....
T Consensus 9 a~~~~L~~~g~~v~~~~~----~~~--~l~---~~~~tll~i~~~~ 45 (70)
T PF14258_consen 9 ALYQLLEEQGVKVERWRK----PYE--ALE---ADDGTLLVIGPDL 45 (70)
T ss_pred HHHHHHHHCCCeeEEecc----cHH--HhC---CCCCEEEEEeCCC
Confidence 345678888999877763 433 332 2445777777763
No 395
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=22.51 E-value=3.5e+02 Score=27.82 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=24.2
Q ss_pred ceEEeecCCccCCCCChH-HHHHHc-CCCHHHHHHHHHHH
Q 009809 473 KWRPLVLPDRYIDHGSPA-DQLAQA-GLTPSHIAATVFNI 510 (525)
Q Consensus 473 ~~~~ig~~d~~~~~g~~~-~l~~~~-gl~~~~I~~~i~~~ 510 (525)
...|||++ +||.+ +++++| +.++|.+++.+...
T Consensus 124 ~piRIGVN-----~GSLek~~~~ky~~pt~ealveSAl~~ 158 (361)
T COG0821 124 IPIRIGVN-----AGSLEKRLLEKYGGPTPEALVESALEH 158 (361)
T ss_pred CCEEEecc-----cCchhHHHHHHhcCCCHHHHHHHHHHH
Confidence 34678874 46666 777888 66899999988654
No 396
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=22.41 E-value=4.2e+02 Score=23.92 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=35.1
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhC-C--CcEEEEeccccccCcHHHHHHHhccCCeEEEEcCC
Q 009809 390 RVALLGYGTAVQ----SCLAASALLESN-G--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 449 (525)
Q Consensus 390 dv~iva~G~~~~----~a~~Aa~~L~~~-G--i~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~ 449 (525)
++.|+++|+... .-..+++.|++. . -.+++++..+.- .+ +...+..++.+|+||..
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~~-ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---ME-LLGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---HH-HHHHHhCCCEEEEEEec
Confidence 467899998662 444667777653 3 358888887643 22 33344466777777753
No 397
>PRK12559 transcriptional regulator Spx; Provisional
Probab=22.01 E-value=2.4e+02 Score=24.62 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
....|.+|.+.|++.|+....+++.. .|++.+.|.++++.
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~ 48 (131)
T PRK12559 9 SCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRL 48 (131)
T ss_pred CChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHH
Confidence 45788889999999999999999854 78888888887764
No 398
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=22.00 E-value=1.7e+02 Score=24.75 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 397 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
-.....|.+|.+.|++.|+...++++.. .|...+.+.++++..
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLL 48 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHc
Confidence 3456788999999999999999999853 677788887776544
No 399
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.33 E-value=3.7e+02 Score=21.49 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=36.8
Q ss_pred EEEEEechhHH-----HHHHHHHHHHhC--CCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCC
Q 009809 391 VALLGYGTAVQ-----SCLAASALLESN--GLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGS 450 (525)
Q Consensus 391 v~iva~G~~~~-----~a~~Aa~~L~~~--Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~ 450 (525)
+.+++.|+... ...+.++.|+++ +..+.+--.....|.-.+.+.++.+ +.++++++--..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~ 69 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAP 69 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCcc
Confidence 56788887653 333445566554 3455444443348888888888754 457888877654
No 400
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.07 E-value=7.8e+02 Score=23.99 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=41.3
Q ss_pred EEEEEechh-HHHHHHHHHHH-HhCCCcEEEEeccccccCcHHH-----HHHHhccCCeEEEEcCCCCCCHHHHHHHH
Q 009809 391 VALLGYGTA-VQSCLAASALL-ESNGLRLTVADARFCKPLDHAL-----IRSLAKSHEVLITVEEGSIGGFGSHVVQF 461 (525)
Q Consensus 391 v~iva~G~~-~~~a~~Aa~~L-~~~Gi~v~vi~~~~l~P~d~~~-----i~~~~~~~~~vvvvE~~~~gglg~~v~~~ 461 (525)
=+|+++|.. ..++.+|++.+ +..+.++.+++|.+-.|-+.+. |..+-+..+..|-.=+|.. |+...+++.
T Consensus 115 PvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~-g~~~~~~Av 191 (241)
T PF03102_consen 115 PVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD-GIEAPIAAV 191 (241)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS-SSHHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC-CcHHHHHHH
Confidence 368899965 58999999999 4558999999999999976542 3333334555566667765 455444443
No 401
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=20.98 E-value=3.9e+02 Score=23.48 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=30.8
Q ss_pred EEEechhH----HHHHHHHHHHHhCCC--cEEEEeccccccCcHHHHHHHhccCCeEEEEcCC
Q 009809 393 LLGYGTAV----QSCLAASALLESNGL--RLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 449 (525)
Q Consensus 393 iva~G~~~----~~a~~Aa~~L~~~Gi--~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~ 449 (525)
|+++|+.. ..-..+++.|+++.. .+.+++..+. + .+.+.++++..+++|+||..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~-~--~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR-G--IHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC-H--HHHHHHHHhcCCEEEEEEec
Confidence 56666654 234455667766543 3777877653 2 23333445567777777753
No 402
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=20.93 E-value=2.1e+02 Score=27.26 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=39.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC--CeEEEEcC
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH--EVLITVEE 448 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~--~~vvvvE~ 448 (525)
++|++-|..-....++++.|++.|+.+-.|-+.. .+.+.|.++.... +.++.+++
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~ 168 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVED 168 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCC
Confidence 4567777555556677888888899888887764 5788888887542 46666665
No 403
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.87 E-value=5.9e+02 Score=22.47 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=44.3
Q ss_pred EEEEechhHHHHHHHHHHH----HhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHH---HHHHHHHH
Q 009809 392 ALLGYGTAVQSCLAASALL----ESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFG---SHVVQFLA 463 (525)
Q Consensus 392 ~iva~G~~~~~a~~Aa~~L----~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg---~~v~~~l~ 463 (525)
+.|-|||....+.+.|+.| ++.|.++.++++.. +.+ +...+.+|++-..+ .|-+. ..+.+.|.
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--------~~~-l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~ 74 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--------LDD-LSASGLWLIVTSTHGAGDLPDNLQPFFEELQ 74 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--------HHH-hccCCeEEEEECCCCCCCCChhHHHHHHHHH
Confidence 3456888887777666544 45699999887532 223 33456677666544 34333 33444554
Q ss_pred HcCCCCCCcceEEeecCC
Q 009809 464 QDGLLDGTVKWRPLVLPD 481 (525)
Q Consensus 464 ~~~~~~~~~~~~~ig~~d 481 (525)
+....-...++-.+|.-|
T Consensus 75 ~~~~~l~g~~~aVfGlGd 92 (146)
T PRK09004 75 EQKPDLSQVRFAAIGIGS 92 (146)
T ss_pred hcCCCCCCCEEEEEeecC
Confidence 432111134566666533
No 404
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=20.65 E-value=6.2e+02 Score=24.92 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=39.5
Q ss_pred cCcHHHHHHHhccCCeEEEEcCC----CCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHc--CC--
Q 009809 427 PLDHALIRSLAKSHEVLITVEEG----SIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQA--GL-- 498 (525)
Q Consensus 427 P~d~~~i~~~~~~~~~vvvvE~~----~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~--gl-- 498 (525)
+.+.+.+.++++.+..++..-.. ..-|++.-+.+.+.- ..|+... + .+...++.+.. |+
T Consensus 243 ~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~------G~Pvi~~---~----~~~~~~~i~~~~~g~~~ 309 (355)
T cd03799 243 AKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAM------GLPVIST---D----VSGIPELVEDGETGLLV 309 (355)
T ss_pred cCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHc------CCCEEec---C----CCCcchhhhCCCceEEe
Confidence 34566677777777644432111 015667777777652 2343221 1 11223333332 32
Q ss_pred ---CHHHHHHHHHHHhhcc
Q 009809 499 ---TPSHIAATVFNILGQT 514 (525)
Q Consensus 499 ---~~~~I~~~i~~~l~~~ 514 (525)
+++.+++++.+++..+
T Consensus 310 ~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 310 PPGDPEALADAIERLLDDP 328 (355)
T ss_pred CCCCHHHHHHHHHHHHhCH
Confidence 6888999988887543
No 405
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=20.65 E-value=4.1e+02 Score=22.39 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=19.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEec
Q 009809 390 RVALLGYGTAVQSCLAASALLESNGLRLTVADA 422 (525)
Q Consensus 390 dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 422 (525)
++.|+..|.. +.++...+++.|++.-+++.
T Consensus 4 kvLIanrGei---a~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 4 KVLIANRGEI---AVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp EEEESS-HHH---HHHHHHHHHHTTSEEEEEEE
T ss_pred EEEEECCCHH---HHHHHHHHHHhCCcceeccC
Confidence 4566666666 44555556677999888885
No 406
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=20.23 E-value=4e+02 Score=23.14 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=33.3
Q ss_pred EEEechhH----HHHHHHHHHHHhCC--CcEEEEeccccccCcHHHHHHHhccCCeEEEEcCC
Q 009809 393 LLGYGTAV----QSCLAASALLESNG--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 449 (525)
Q Consensus 393 iva~G~~~----~~a~~Aa~~L~~~G--i~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~ 449 (525)
|+++|+.. ..-..+++.|++.. -.+++++..+.- .+ +...+...+.+|+||..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~~---~~-l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTLG---LE-LLDLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCCH---HH-HHHHHhcCCeEEEEECc
Confidence 67777754 23445677776653 468888887752 22 33445557788888864
No 407
>PRK00170 azoreductase; Reviewed
Probab=20.02 E-value=4.2e+02 Score=24.36 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhC--CCcEEEEeccccc-c-Cc------------------------HHHHHHHhccCCeEEEEcCCCCC
Q 009809 401 QSCLAASALLESN--GLRLTVADARFCK-P-LD------------------------HALIRSLAKSHEVLITVEEGSIG 452 (525)
Q Consensus 401 ~~a~~Aa~~L~~~--Gi~v~vi~~~~l~-P-~d------------------------~~~i~~~~~~~~~vvvvE~~~~g 452 (525)
..+..+++.|+++ |.+++++|+.... | ++ .+.+.+.+..+..||++=--+.+
T Consensus 20 ~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y~~ 99 (201)
T PRK00170 20 QLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMYNF 99 (201)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeeccccc
Confidence 3444566778777 8999999986442 3 21 12233445567777766554567
Q ss_pred CHHHHHHHHHHH
Q 009809 453 GFGSHVVQFLAQ 464 (525)
Q Consensus 453 glg~~v~~~l~~ 464 (525)
++.+.+..++-.
T Consensus 100 ~~pa~LK~~iDr 111 (201)
T PRK00170 100 SIPTQLKAYIDL 111 (201)
T ss_pred CCcHHHHHHHHh
Confidence 787777766643
Done!