Query 009809
Match_columns 525
No_of_seqs 198 out of 2108
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 7.8E-84 2.7E-88 710.6 43.1 489 1-513 135-624 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 5.2E-83 1.8E-87 703.6 39.3 487 1-512 133-620 (621)
3 3mos_A Transketolase, TK; thia 100.0 8.8E-75 3E-79 634.4 40.5 437 2-508 134-615 (616)
4 3rim_A Transketolase, TK; TPP, 100.0 1.7E-73 5.7E-78 626.8 31.1 429 9-512 166-699 (700)
5 3l84_A Transketolase; TKT, str 100.0 3E-73 1E-77 620.7 30.1 425 2-508 127-630 (632)
6 3kom_A Transketolase; rossmann 100.0 6.2E-73 2.1E-77 622.0 27.6 428 11-510 148-662 (663)
7 3uk1_A Transketolase; structur 100.0 4.3E-73 1.5E-77 625.3 25.8 426 11-511 187-710 (711)
8 3m49_A Transketolase; alpha-be 100.0 2.1E-72 7.2E-77 618.8 28.7 428 11-511 172-690 (690)
9 1itz_A Transketolase; calvin c 100.0 4E-71 1.4E-75 611.9 32.0 425 10-509 158-674 (675)
10 2e6k_A Transketolase; structur 100.0 3.6E-71 1.2E-75 610.6 28.0 422 10-510 149-650 (651)
11 2r8o_A Transketolase 1, TK 1; 100.0 7.9E-71 2.7E-75 609.6 28.3 431 10-513 145-665 (669)
12 1r9j_A Transketolase; domains, 100.0 3.6E-70 1.2E-74 603.5 28.7 425 10-514 147-658 (673)
13 1gpu_A Transketolase; transfer 100.0 1.1E-69 3.7E-74 600.9 30.5 426 10-515 147-668 (680)
14 2qtc_A Pyruvate dehydrogenase 100.0 1.8E-67 6.2E-72 591.0 28.5 491 2-513 205-858 (886)
15 1ik6_A Pyruvate dehydrogenase; 100.0 8E-60 2.7E-64 486.1 24.3 339 162-512 9-368 (369)
16 1w85_B Pyruvate dehydrogenase 100.0 2.1E-55 7.3E-60 447.4 29.9 304 201-512 3-323 (324)
17 2ozl_B PDHE1-B, pyruvate dehyd 100.0 4.7E-55 1.6E-59 446.6 29.9 307 199-512 13-340 (341)
18 2bfd_B 2-oxoisovalerate dehydr 100.0 2E-55 6.8E-60 450.1 24.6 318 186-512 6-341 (342)
19 1umd_B E1-beta, 2-OXO acid deh 100.0 1.2E-54 4.3E-59 441.9 29.0 304 200-512 3-323 (324)
20 3ahc_A Phosphoketolase, xylulo 100.0 1.7E-54 5.9E-59 477.0 30.4 449 2-513 184-787 (845)
21 2jgd_A 2-oxoglutarate dehydrog 100.0 2.6E-54 8.9E-59 486.1 29.3 444 1-508 333-930 (933)
22 1qs0_B 2-oxoisovalerate dehydr 100.0 4.5E-53 1.5E-57 432.9 25.6 300 200-511 4-336 (338)
23 2yic_A 2-oxoglutarate decarbox 100.0 1E-51 3.5E-56 462.7 22.6 422 10-491 276-854 (868)
24 2xt6_A 2-oxoglutarate decarbox 100.0 2.4E-51 8.2E-56 470.3 21.9 421 10-491 521-1099(1113)
25 1yd7_A 2-keto acid:ferredoxin 99.9 7.3E-26 2.5E-30 235.5 10.7 285 200-511 22-394 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.8 1.3E-19 4.6E-24 210.6 27.0 254 244-513 55-384 (1231)
27 1qs0_A 2-oxoisovalerate dehydr 99.7 3.5E-17 1.2E-21 169.8 8.6 125 2-181 194-321 (407)
28 1w85_A Pyruvate dehydrogenase 99.7 4.6E-17 1.6E-21 167.1 8.4 125 2-181 155-282 (368)
29 1umd_A E1-alpha, 2-OXO acid de 99.7 7.1E-17 2.4E-21 166.1 7.7 126 1-181 156-283 (367)
30 2bfd_A 2-oxoisovalerate dehydr 99.6 2.1E-16 7.2E-21 163.9 7.5 119 2-174 175-295 (400)
31 3ju3_A Probable 2-oxoacid ferr 99.6 1.3E-15 4.3E-20 131.0 10.7 107 386-512 11-117 (118)
32 2ozl_A PDHE1-A type I, pyruvat 99.6 6.6E-16 2.2E-20 158.1 7.0 116 2-173 153-270 (365)
33 4feg_A Pyruvate oxidase; carba 99.1 4.3E-12 1.5E-16 139.2 0.0 121 2-171 429-551 (603)
34 3eya_A Pyruvate dehydrogenase 99.0 1.8E-10 6E-15 125.0 3.6 117 2-168 415-531 (549)
35 1ozh_A ALS, acetolactate synth 99.0 1.9E-10 6.6E-15 125.1 3.6 118 2-169 429-546 (566)
36 2iht_A Carboxyethylarginine sy 98.9 2.4E-10 8.3E-15 124.5 3.9 115 2-166 445-561 (573)
37 1ybh_A Acetolactate synthase, 98.9 2.5E-10 8.7E-15 124.8 4.1 128 2-170 435-562 (590)
38 1q6z_A BFD, BFDC, benzoylforma 98.9 2.4E-10 8.3E-15 123.3 3.0 115 2-166 410-525 (528)
39 1t9b_A Acetolactate synthase, 98.9 3.8E-10 1.3E-14 125.0 4.0 119 2-170 522-641 (677)
40 2pgn_A Cyclohexane-1,2-dione h 98.9 1.9E-10 6.5E-15 125.8 1.2 121 2-172 433-553 (589)
41 3hww_A 2-succinyl-5-enolpyruvy 98.9 8.8E-10 3E-14 119.6 4.5 115 2-166 425-539 (556)
42 2uz1_A Benzaldehyde lyase; thi 98.9 7.3E-10 2.5E-14 120.5 3.3 117 2-166 428-546 (563)
43 1v5e_A Pyruvate oxidase; oxido 98.8 1.3E-09 4.3E-14 119.2 5.1 119 2-168 422-541 (590)
44 2vbi_A Pyruvate decarboxylase; 98.8 2.3E-09 8E-14 116.6 7.0 113 2-169 418-536 (566)
45 1ovm_A Indole-3-pyruvate decar 98.8 1.3E-09 4.4E-14 118.2 4.8 113 2-167 417-533 (552)
46 2pan_A Glyoxylate carboligase; 98.8 3.1E-09 1.1E-13 116.8 6.3 126 2-169 451-583 (616)
47 2nxw_A Phenyl-3-pyruvate decar 98.8 3.2E-09 1.1E-13 115.5 5.7 112 2-167 431-543 (565)
48 2vbf_A Branched-chain alpha-ke 98.8 2.2E-09 7.5E-14 116.9 3.9 114 2-168 434-553 (570)
49 2wvg_A PDC, pyruvate decarboxy 98.7 5.6E-09 1.9E-13 113.6 5.6 115 2-170 422-545 (568)
50 3lq1_A 2-succinyl-5-enolpyruvy 98.7 4.9E-09 1.7E-13 114.3 5.2 119 2-169 445-563 (578)
51 2x7j_A 2-succinyl-5-enolpyruvy 98.7 2.4E-09 8.4E-14 117.3 1.8 117 2-166 464-580 (604)
52 2q28_A Oxalyl-COA decarboxylas 98.7 1.3E-08 4.5E-13 110.6 7.4 116 2-169 430-547 (564)
53 2c31_A Oxalyl-COA decarboxylas 98.7 1E-08 3.5E-13 111.5 5.4 115 2-169 435-550 (568)
54 2vk8_A Pyruvate decarboxylase 98.6 5.4E-09 1.8E-13 113.6 1.8 109 7-167 431-543 (563)
55 2c42_A Pyruvate-ferredoxin oxi 97.7 4.1E-05 1.4E-09 89.5 8.1 115 11-165 953-1069(1231)
56 1v5e_A Pyruvate oxidase; oxido 95.0 0.072 2.5E-06 57.7 9.7 113 244-362 45-165 (590)
57 2uz1_A Benzaldehyde lyase; thi 94.2 0.21 7.3E-06 53.5 11.1 151 201-361 4-164 (563)
58 1ybh_A Acetolactate synthase, 94.1 0.29 9.8E-06 52.9 11.9 113 244-361 52-172 (590)
59 2vbi_A Pyruvate decarboxylase; 94.0 0.31 1.1E-05 52.3 12.0 115 244-362 43-170 (566)
60 2pan_A Glyoxylate carboligase; 94.0 0.34 1.2E-05 52.6 12.3 112 244-360 67-187 (616)
61 2wvg_A PDC, pyruvate decarboxy 93.6 0.78 2.7E-05 49.2 14.2 115 244-361 43-169 (568)
62 2iht_A Carboxyethylarginine sy 93.5 0.17 5.7E-06 54.5 8.8 115 243-361 49-171 (573)
63 3eya_A Pyruvate dehydrogenase 93.5 0.54 1.9E-05 50.2 12.8 112 244-360 43-161 (549)
64 4feg_A Pyruvate oxidase; carba 93.5 0.59 2E-05 50.6 13.0 112 244-361 52-171 (603)
65 1ozh_A ALS, acetolactate synth 93.4 0.23 7.9E-06 53.3 9.6 115 244-361 50-170 (566)
66 2nxw_A Phenyl-3-pyruvate decar 93.3 0.51 1.7E-05 50.7 12.1 153 200-361 20-186 (565)
67 1q6z_A BFD, BFDC, benzoylforma 93.2 0.69 2.4E-05 49.1 12.8 146 208-361 5-161 (528)
68 3hww_A 2-succinyl-5-enolpyruvy 93.0 1.5 5E-05 46.9 15.2 149 205-361 8-171 (556)
69 2pgn_A Cyclohexane-1,2-dione h 92.8 0.38 1.3E-05 51.9 10.2 114 244-361 45-165 (589)
70 2c31_A Oxalyl-COA decarboxylas 92.8 0.49 1.7E-05 50.7 11.0 116 243-361 48-171 (568)
71 1t9b_A Acetolactate synthase, 92.8 0.7 2.4E-05 50.7 12.4 114 244-360 122-241 (677)
72 2vbf_A Branched-chain alpha-ke 91.8 1 3.5E-05 48.3 12.0 114 244-361 65-190 (570)
73 2q28_A Oxalyl-COA decarboxylas 91.5 0.99 3.4E-05 48.3 11.5 116 243-361 46-169 (564)
74 3lq1_A 2-succinyl-5-enolpyruvy 91.1 2.1 7.1E-05 46.0 13.5 147 207-361 13-178 (578)
75 2x7j_A 2-succinyl-5-enolpyruvy 89.6 1.9 6.5E-05 46.5 11.6 148 206-361 32-198 (604)
76 1ovm_A Indole-3-pyruvate decar 88.0 3.2 0.00011 44.1 12.0 112 247-361 47-170 (552)
77 2vk8_A Pyruvate decarboxylase 87.6 5.4 0.00018 42.5 13.5 114 244-361 44-170 (563)
78 1w85_A Pyruvate dehydrogenase 80.6 3 0.0001 42.0 7.2 102 254-358 146-263 (368)
79 2bfd_A 2-oxoisovalerate dehydr 78.8 2.9 9.9E-05 42.7 6.4 100 256-358 168-283 (400)
80 3m49_A Transketolase; alpha-be 73.4 9.1 0.00031 41.9 8.9 89 268-359 173-270 (690)
81 1gpu_A Transketolase; transfer 70.6 10 0.00035 41.4 8.6 88 268-358 149-246 (680)
82 2ozl_A PDHE1-A type I, pyruvat 69.3 6.1 0.00021 39.7 5.9 102 255-358 145-259 (365)
83 1umd_A E1-alpha, 2-OXO acid de 68.7 12 0.00041 37.5 8.0 100 256-358 150-265 (367)
84 1r9j_A Transketolase; domains, 68.6 17 0.00057 39.7 9.6 88 268-358 149-246 (673)
85 1qs0_A 2-oxoisovalerate dehydr 67.9 6.8 0.00023 40.0 6.0 100 256-358 187-303 (407)
86 2r8o_A Transketolase 1, TK 1; 67.9 13 0.00044 40.6 8.6 88 268-358 147-243 (669)
87 3ipz_A Monothiol glutaredoxin- 66.9 9.6 0.00033 30.8 5.7 69 388-457 17-90 (109)
88 3kom_A Transketolase; rossmann 65.7 12 0.0004 40.9 7.6 88 268-358 149-245 (663)
89 3rim_A Transketolase, TK; TPP, 62.9 24 0.00081 38.6 9.4 89 268-359 169-266 (700)
90 2wci_A Glutaredoxin-4; redox-a 59.1 14 0.00049 31.3 5.5 66 389-455 35-105 (135)
91 1itz_A Transketolase; calvin c 58.6 34 0.0012 37.2 9.8 89 268-359 160-258 (675)
92 3uk1_A Transketolase; structur 58.3 22 0.00076 38.9 8.2 87 268-358 188-283 (711)
93 3zyw_A Glutaredoxin-3; metal b 57.9 18 0.00061 29.3 5.7 68 388-456 15-87 (111)
94 2o1x_A 1-deoxy-D-xylulose-5-ph 57.2 24 0.00082 38.0 8.3 26 332-358 260-285 (629)
95 2e6k_A Transketolase; structur 56.5 27 0.00093 37.8 8.5 87 268-358 151-246 (651)
96 2q62_A ARSH; alpha/beta, flavo 56.1 26 0.00091 32.9 7.4 64 401-464 52-123 (247)
97 3mos_A Transketolase, TK; thia 55.9 30 0.001 37.3 8.6 98 255-358 126-238 (616)
98 1wik_A Thioredoxin-like protei 55.8 14 0.00046 29.7 4.7 67 388-455 14-85 (109)
99 3l84_A Transketolase; TKT, str 55.3 28 0.00097 37.6 8.3 86 268-358 144-238 (632)
100 2lqo_A Putative glutaredoxin R 54.7 36 0.0012 26.6 6.8 72 389-465 4-82 (92)
101 3rpe_A MDAB, modulator of drug 52.1 43 0.0015 30.8 8.0 59 402-462 48-106 (218)
102 2o1s_A 1-deoxy-D-xylulose-5-ph 50.7 41 0.0014 36.1 8.7 27 331-358 254-280 (621)
103 2vzf_A NADH-dependent FMN redu 49.9 30 0.001 30.8 6.5 65 399-463 18-93 (197)
104 2jgd_A 2-oxoglutarate dehydrog 46.6 50 0.0017 37.4 8.8 108 247-357 319-451 (933)
105 1sqs_A Conserved hypothetical 45.5 45 0.0015 30.8 7.1 66 399-464 17-104 (242)
106 2amj_A Modulator of drug activ 42.5 52 0.0018 29.6 6.9 60 402-463 35-94 (204)
107 2fzv_A Putative arsenical resi 41.3 39 0.0013 32.4 6.0 64 401-464 76-148 (279)
108 3gx8_A Monothiol glutaredoxin- 41.1 36 0.0012 27.9 5.1 66 388-457 15-91 (121)
109 2wem_A Glutaredoxin-related pr 39.9 48 0.0016 27.1 5.6 69 388-457 19-93 (118)
110 3u7r_A NADPH-dependent FMN red 39.6 52 0.0018 29.4 6.3 63 400-462 18-90 (190)
111 3gx1_A LIN1832 protein; APC633 36.6 1.8E+02 0.0062 24.0 11.0 112 390-514 6-126 (130)
112 4dik_A Flavoprotein; TM0755, e 36.3 95 0.0032 31.4 8.3 69 391-459 267-339 (410)
113 1jl3_A Arsenate reductase; alp 35.0 24 0.00082 29.8 3.0 106 391-514 32-138 (139)
114 1aba_A Glutaredoxin; electron 34.0 82 0.0028 23.5 5.8 58 399-456 13-81 (87)
115 1t1v_A SH3BGRL3, SH3 domain-bi 34.0 46 0.0016 25.5 4.4 66 390-457 3-77 (93)
116 3lp6_A Phosphoribosylaminoimid 33.5 2.4E+02 0.0083 24.8 9.3 69 389-460 8-82 (174)
117 3lyu_A Putative hydrogenase; t 32.8 49 0.0017 27.9 4.7 49 388-436 18-67 (142)
118 1t0i_A YLR011WP; FMN binding p 32.7 76 0.0026 27.7 6.2 66 399-464 16-109 (191)
119 2yan_A Glutaredoxin-3; oxidore 32.6 58 0.002 25.5 4.9 68 389-457 17-89 (105)
120 1qs0_B 2-oxoisovalerate dehydr 32.5 64 0.0022 31.6 6.2 38 123-165 138-176 (338)
121 2a5l_A Trp repressor binding p 31.9 50 0.0017 29.0 4.9 67 397-464 17-96 (200)
122 3ors_A N5-carboxyaminoimidazol 31.6 2.6E+02 0.0088 24.3 10.4 69 389-460 4-78 (163)
123 3kuu_A Phosphoribosylaminoimid 31.2 2.7E+02 0.0093 24.5 9.6 68 390-460 14-87 (174)
124 3noy_A 4-hydroxy-3-methylbut-2 31.2 83 0.0028 31.2 6.5 45 457-512 124-170 (366)
125 3l78_A Regulatory protein SPX; 30.3 99 0.0034 25.2 6.1 41 398-439 8-48 (120)
126 3f2v_A General stress protein 30.3 82 0.0028 28.1 6.0 62 403-464 19-83 (192)
127 3fni_A Putative diflavin flavo 29.6 2.6E+02 0.0088 23.7 9.9 53 392-446 7-63 (159)
128 3fz4_A Putative arsenate reduc 29.5 89 0.003 25.5 5.6 42 398-440 11-52 (120)
129 3l4e_A Uncharacterized peptida 29.2 95 0.0033 28.1 6.3 55 388-445 27-85 (206)
130 1xmp_A PURE, phosphoribosylami 28.7 3E+02 0.01 24.1 9.4 68 389-459 12-85 (170)
131 2fz5_A Flavodoxin; alpha/beta 28.3 1.1E+02 0.0038 24.6 6.2 64 393-463 3-72 (137)
132 3hly_A Flavodoxin-like domain; 28.3 2.7E+02 0.0092 23.5 11.5 52 393-447 4-59 (161)
133 5nul_A Flavodoxin; electron tr 28.2 85 0.0029 25.7 5.5 45 397-448 10-54 (138)
134 3qmx_A Glutaredoxin A, glutare 27.4 83 0.0028 24.5 4.9 67 389-457 16-84 (99)
135 2l69_A Rossmann 2X3 fold prote 27.3 1.6E+02 0.0055 22.9 6.2 107 391-514 3-124 (134)
136 3rg8_A Phosphoribosylaminoimid 26.8 3.1E+02 0.011 23.7 11.5 69 390-460 4-78 (159)
137 2yic_A 2-oxoglutarate decarbox 26.7 1.8E+02 0.0061 32.6 9.0 81 275-358 287-380 (868)
138 4bby_A Alkyldihydroxyacetoneph 26.2 2.6E+02 0.0088 30.1 10.1 85 322-408 202-292 (658)
139 3kkj_A Amine oxidase, flavin-c 26.1 51 0.0017 29.3 3.9 31 389-422 3-33 (336)
140 2h31_A Multifunctional protein 25.9 1.9E+02 0.0063 29.4 8.2 69 390-460 267-341 (425)
141 1o4v_A Phosphoribosylaminoimid 25.8 3.5E+02 0.012 24.0 9.9 69 389-460 14-88 (183)
142 1v95_A Nuclear receptor coacti 25.8 2.1E+02 0.007 23.9 7.2 58 390-448 10-69 (130)
143 1u6t_A SH3 domain-binding glut 25.5 51 0.0017 27.3 3.3 54 403-457 19-81 (121)
144 3gkx_A Putative ARSC family re 25.3 1E+02 0.0034 25.2 5.2 42 397-439 11-52 (120)
145 1rtt_A Conserved hypothetical 25.1 46 0.0016 29.4 3.3 57 407-464 30-97 (193)
146 3trh_A Phosphoribosylaminoimid 24.5 3.5E+02 0.012 23.6 10.0 69 390-460 8-81 (169)
147 2ab1_A Hypothetical protein; H 24.3 36 0.0012 28.2 2.2 38 386-423 59-98 (122)
148 1rw1_A Conserved hypothetical 24.2 93 0.0032 25.0 4.8 42 398-440 8-49 (114)
149 3hr4_A Nitric oxide synthase, 24.2 85 0.0029 28.8 4.9 84 389-479 40-130 (219)
150 3rdw_A Putative arsenate reduc 23.8 92 0.0032 25.5 4.7 43 398-441 13-55 (121)
151 3ic4_A Glutaredoxin (GRX-1); s 23.5 1.2E+02 0.0041 22.6 5.1 65 390-455 13-82 (92)
152 2qtc_A Pyruvate dehydrogenase 23.2 4E+02 0.014 29.8 11.0 24 335-358 365-388 (886)
153 3qhp_A Type 1 capsular polysac 23.1 3.1E+02 0.011 22.4 8.8 104 390-515 34-142 (166)
154 3fwz_A Inner membrane protein 23.0 2.1E+02 0.007 23.4 7.0 31 389-422 8-38 (140)
155 1ydg_A Trp repressor binding p 22.9 86 0.0029 27.9 4.8 68 397-464 18-103 (211)
156 1t5b_A Acyl carrier protein ph 22.4 2.1E+02 0.0071 24.8 7.2 64 401-464 20-111 (201)
157 3tem_A Ribosyldihydronicotinam 22.4 1.3E+02 0.0044 27.6 5.9 65 400-464 18-117 (228)
158 1fov_A Glutaredoxin 3, GRX3; a 22.2 2E+02 0.0069 20.5 6.1 70 391-463 3-73 (82)
159 3g8r_A Probable spore coat pol 21.9 5.7E+02 0.02 25.0 11.8 63 392-454 138-207 (350)
160 4grd_A N5-CAIR mutase, phospho 21.7 4.1E+02 0.014 23.3 9.8 70 389-460 13-87 (173)
161 1z3e_A Regulatory protein SPX; 21.5 2.1E+02 0.0071 23.5 6.5 42 397-439 8-49 (132)
162 2ct6_A SH3 domain-binding glut 21.4 78 0.0027 25.3 3.7 65 390-456 9-88 (111)
163 3h8q_A Thioredoxin reductase 3 21.2 2.9E+02 0.01 21.7 7.3 67 388-457 16-87 (114)
164 2wqp_A Polysialic acid capsule 21.0 5.9E+02 0.02 24.9 12.5 71 391-462 150-227 (349)
165 3f6r_A Flavodoxin; FMN binding 20.8 1.7E+02 0.0057 24.1 6.0 65 393-464 5-77 (148)
166 3fvw_A Putative NAD(P)H-depend 20.8 1.4E+02 0.0049 26.2 5.7 62 402-464 21-92 (192)
167 2k53_A A3DK08 protein; NESG, C 20.7 68 0.0023 24.1 2.9 32 486-518 38-69 (76)
168 4hs4_A Chromate reductase; tri 20.7 1E+02 0.0036 27.5 4.8 56 405-462 28-96 (199)
169 2ozl_B PDHE1-B, pyruvate dehyd 20.5 1.8E+02 0.0062 28.4 6.9 33 126-163 152-184 (341)
170 2fvt_A Conserved hypothetical 20.5 44 0.0015 28.3 2.0 36 388-423 67-103 (135)
171 2fi9_A Outer membrane protein; 20.3 43 0.0015 28.0 1.9 36 388-423 68-104 (128)
172 2hpv_A FMN-dependent NADH-azor 20.2 1.9E+02 0.0065 25.4 6.5 64 401-464 21-119 (208)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=7.8e-84 Score=710.58 Aligned_cols=489 Identities=39% Similarity=0.642 Sum_probs=403.0
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|+|.++++++++|||++|||++++|++||+||+|+++++|++|||+||++.+ ...++..+..+..++.++
T Consensus 135 ~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i---------~~~~~~~~~~~~~l~~~~ 205 (629)
T 2o1x_A 135 MALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSI---------SENVGAMNKFMRGLQVQK 205 (629)
T ss_dssp HHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSS---------SBCCSSHHHHC-------
T ss_pred HHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCCC---------CCChhHHHHHHHHHhhch
Confidence 36677788999999999999999999999999999999999999999998652 223344555666677788
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|+.++...+.+++.+|....+...+..++.+.++.|.+..+|++|||++++++||||+++|.+++++|++ .++|++|
T Consensus 206 ~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI 283 (629)
T 2o1x_A 206 WFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTIL 283 (629)
T ss_dssp --------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEE
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEE
Confidence 88888777766665554433333333334444444443337899999999988999999999999999988 6899999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
+++|.||+|++++++++..||+.++|++.++.... . +..+|+++|+++|.+++++||+++++++|+++++++.+|+++
T Consensus 284 ~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~ 361 (629)
T 2o1x_A 284 HIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVP-S-SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRV 361 (629)
T ss_dssp EEECCTTTTCHHHHHCTTGGGSCCSBCTTTCCBCC-C-CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHH
T ss_pred EEEEecCCCCChhHcCCcccccCccCCcCcCcccc-c-chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHh
Confidence 99999999999999888899999999998875322 1 267999999999999999999999999999988889999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||+|+||+|++|+++|+|+|++|+|||+++|++|++|++||+++++|++++||+++++++|+.|++|+|||+.+|++
T Consensus 362 ~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a 441 (629)
T 2o1x_A 362 HPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLS 441 (629)
T ss_dssp CGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHH
T ss_pred cCcceEeccccHHHHHHHHHHHHHcCCEEEEEecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888788999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
++|.+|||+|++|+|++|+++++++|++. ++|++||++|+..+.. +. ...+.+++|+++++++|+|++||++|+++
T Consensus 442 ~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-~~Pv~i~~~r~~~~~~--~~-~~~~~~~~G~~~~~~~g~dv~iva~G~~v 517 (629)
T 2o1x_A 442 FLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGPFAIRYPRGNTAQV--PA-GTWPDLKWGEWERLKGGDDVVILAGGKAL 517 (629)
T ss_dssp HTTTSTTCEEECCSSHHHHHHHHHHHHHS-SSCEEEECCSSBCCCC--CT-TCCCCCCTTCCEEEECCSSEEEEECHHHH
T ss_pred HHHccCCcEEEecCCHHHHHHHHHHHHhC-CCCEEEEecCCCCCCC--cc-cccccccCCceEEEeeCCCEEEEEecHHH
Confidence 99999999999999999999999999874 7999999999864322 21 12345778999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeec
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~ 479 (525)
..|++|++.|+ +++||+++|++|||.++|.+++++++++||+|++. .|||+++|++++.++++ +.++.++|+
T Consensus 518 ~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~ 590 (629)
T 2o1x_A 518 DYALKAAEDLP----GVGVVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGI 590 (629)
T ss_dssp HHHHHHHTTCT----TEEEEECCEEESCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEE
T ss_pred HHHHHHHHHhc----CCEEEeeCCCCCCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEee
Confidence 99999999885 89999999999999999999999999999999997 69999999999998874 578999999
Q ss_pred CCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 480 PDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 480 ~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
+|.|+++|+.++|++++|++++.|++++++++..
T Consensus 591 ~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~~~ 624 (629)
T 2o1x_A 591 PDEFQEHATAESVHARAGIDAPAIRTVLAELGVD 624 (629)
T ss_dssp CSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTTCC
T ss_pred CCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999987644
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.2e-83 Score=703.59 Aligned_cols=487 Identities=48% Similarity=0.771 Sum_probs=377.4
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|+|.++++++++|||++|||++++|++||+||+|+++++|++|||+||++.+ + ..++.....+.+++.++
T Consensus 133 ~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i------~---~~~~~~~~~~~~~~~~~ 203 (621)
T 2o1s_A 133 IAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSI------S---ENVGALNNHLAQLLSGK 203 (621)
T ss_dssp HHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC------------------------------
T ss_pred HHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCccc------C---CCcchHHHHHHhhhcch
Confidence 36777888999999999999999999999999999999999999999998652 1 22233344556667777
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
.|+.++...+.+.+.. +...+...+..++.+.+..| ..+|++|||++++++||||+++|.+++++|++ .++|++|
T Consensus 204 ~y~~~~~~~~~~~~~~-p~~~~~~~r~~~~~~~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI 278 (621)
T 2o1s_A 204 LYSSLREGGKKVFSGV-PPIKELLKRTEEHIKGMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFL 278 (621)
T ss_dssp ------------------------------------C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEE
T ss_pred hHHHHHHHHHHHHhcc-chHHHHHHHHHHHhhhccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEE
Confidence 8877665544333210 00012222333333333333 36799999999988999999999999999998 6899999
Q ss_pred EEEccCCCCchhhhhccccccCCCCCCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHh
Q 009809 161 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRR 240 (525)
Q Consensus 161 ~v~t~kg~g~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~ 240 (525)
+++|.||+|++++++++.+||+.++|++.++.+.+......+|+++|+++|.+++++||+++++++|+.+++++..|+++
T Consensus 279 ~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~ 358 (621)
T 2o1s_A 279 HIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRK 358 (621)
T ss_dssp EEECCCTTCCCCC--------------------------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHH
T ss_pred EEEEecccCCChhhcCchhccCCCCCCCCcCcccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHh
Confidence 99999999999988888899999999988775322223456899999999999999999999999999888889999999
Q ss_pred CCCCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhh
Q 009809 241 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 320 (525)
Q Consensus 241 ~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~ 320 (525)
||+||+|+||+|++|+++|+|+|++|+|||+++|++|++|++||+++++|++++||+++.+++|+.|++|+|||+.+|++
T Consensus 359 ~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~ 438 (621)
T 2o1s_A 359 FPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLS 438 (621)
T ss_dssp CTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHH
T ss_pred CCCceEecCcCHHHHHHHHHHHHHCCCEEEEEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888788999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCCcEEEEEechhH
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 400 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~ 400 (525)
++|.+|||+|++|+|++|+++++++|++..++|++||++|+..+..++|+ . +.+++|+++++++|+|++|||+|+++
T Consensus 439 ~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~--~-~~~~~G~~~~~~~g~dv~iva~G~~~ 515 (621)
T 2o1s_A 439 YLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTP--L-EKLPIGKGIVKRRGEKLAILNFGTLM 515 (621)
T ss_dssp HTTTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSBCCCCCCCC--C-CCCCTTCCEEEECCSSEEEEEESTTH
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHHcCCCCEEEEeCCCCCCCCCCCc--c-ccccCCceEEeecCCCEEEEEecHHH
Confidence 99999999999999999999999999976589999999998754332232 1 45678999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeec
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~ 479 (525)
+.|++| ++|++++||+++|++|||.++|.+++++++++|++|++. .|||+++|++++.++++ +.|+.++|+
T Consensus 516 ~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~ 587 (621)
T 2o1s_A 516 PEAAKV-----AESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGL 587 (621)
T ss_dssp HHHHHH-----HHHHTCEEEECCEEESCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEE
T ss_pred HHHHHH-----cCCCCEEEEecCccCCCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEec
Confidence 999999 459999999999999999999999999999999999997 69999999999998874 578999999
Q ss_pred CCccCCCCChHHHHHHcCCCHHHHHHHHHHHhh
Q 009809 480 PDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 480 ~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 512 (525)
+|.|+++|+.++|++++|++++.|+++|+++++
T Consensus 588 ~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~l~ 620 (621)
T 2o1s_A 588 PDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA 620 (621)
T ss_dssp CSSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred CCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999998864
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=8.8e-75 Score=634.43 Aligned_cols=437 Identities=26% Similarity=0.405 Sum_probs=371.3
Q ss_pred cccccccCC-CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 2 AVGRDLKGR-KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 2 A~a~~l~~~-~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
|+|.++.+. +++|||++|||++++|++||+||+|+++++| +++|++||+++ +++..... .
T Consensus 134 AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~------i~~~~~~~--~---------- 195 (616)
T 3mos_A 134 AYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLG------QSDPAPLQ--H---------- 195 (616)
T ss_dssp HHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBC------SSSBCTTT--T----------
T ss_pred HHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCC------CcCCcccc--c----------
Confidence 555554343 6999999999999999999999999999986 77788778765 23222210 0
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
...++ ..+|++|||+++ ++||||+++|.++++++ .++|++
T Consensus 196 -------------------~~~~~----------------~~~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~l 235 (616)
T 3mos_A 196 -------------------QMDIY----------------QKRCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTA 235 (616)
T ss_dssp -------------------CHHHH----------------HHHHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEE
T ss_pred -------------------ChHHH----------------HHHHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEE
Confidence 01122 224899999999 88999999999999654 478999
Q ss_pred EEEEccCCCCchhhhhccccccCCCC-----------CC--CCCCccc---------------------C---CCCCccc
Q 009809 160 IHVVTEKGRGYPYAEKAADKYHGVAK-----------FD--PATGKQF---------------------K---SSARTQS 202 (525)
Q Consensus 160 i~v~t~kg~g~~~~~~~~~~~h~~~~-----------~~--~~~~~~~---------------------~---~~~~~~~ 202 (525)
|+|+|.||+|++..+ ++.+||+.+. +. .++++.. . ......+
T Consensus 236 I~v~T~kg~G~~~~e-~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 314 (616)
T 3mos_A 236 IIAKTFKGRGITGVE-DKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIA 314 (616)
T ss_dssp EEEECCTTTTSTTTT-TCSSCTTCCCCHHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCC
T ss_pred EEEEEeccccccccc-CchhhcCCCCCHHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchH
Confidence 999999999997655 6788999652 10 0111110 0 0112357
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcchHHHHHhCCCCeeeccchHHHHHHHHHHHhcCCC-eEEEeechhhHHHH
Q 009809 203 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGL-KPFCAIYSSFMQRA 281 (525)
Q Consensus 203 ~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~G~-~pi~~t~~~F~~~a 281 (525)
++++++++|.+++++||+++++++|+++++.+..|+++||+||+|+||+|++|+++|+|+|++|+ +|++.+|++|++|+
T Consensus 315 ~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a 394 (616)
T 3mos_A 315 TRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRA 394 (616)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHH
Confidence 88999999999999999999999999987788999999999999999999999999999999997 79999999999999
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecC
Q 009809 282 YDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 360 (525)
Q Consensus 282 ~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~ 360 (525)
+|||++. +++++||+++.++.|+ .|.+|+|||+.+|+++++.+||++|++|+|++|+..+++++++ .++|+++|++|
T Consensus 395 ~dqi~~~-a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r 472 (616)
T 3mos_A 395 FDQIRMA-AISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSR 472 (616)
T ss_dssp HHHHHHH-HHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCS
T ss_pred HHHHHHH-HHhCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeC
Confidence 9999874 7899999999999998 7899999999999999999999999999999999999999976 57899999999
Q ss_pred CCCCCcccCCCCCCCccccCceEEEeeCCc--EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc
Q 009809 361 GNGIGVELPPGNKGIPLEVGKGRILIEGER--VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK 438 (525)
Q Consensus 361 ~~~~~~~~p~~~~~~~~~~g~~~~l~~g~d--v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~ 438 (525)
...+.. . .....+++|+++++++|.| ++||++|++++.|++|+++|+++||+++|||+++++|||.++|.++++
T Consensus 473 ~~~p~~--~--~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~ 548 (616)
T 3mos_A 473 PENAII--Y--NNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSAR 548 (616)
T ss_dssp SCCBCC--S--CTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHH
T ss_pred CCCCcc--C--CCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHH
Confidence 763321 1 1234567899999999876 999999999999999999999999999999999999999999999999
Q ss_pred cC-CeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHH
Q 009809 439 SH-EVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVF 508 (525)
Q Consensus 439 ~~-~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~ 508 (525)
++ ++|||+||+. .||+|++|++.+.+++ +.++.++|++ .|+.+|++++|++++||+++.|+++|+
T Consensus 549 ~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~----~~~v~~~g~~-~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 549 ATKGRILTVEDHYYEGGIGEAVSSAVVGEP----GITVTHLAVN-RVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp HTTTEEEEEEEEESTTSHHHHHHHHHTTCT----TCEEEEEEEC-SCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred hcCCEEEEEcCCCCCcCHHHHHHHHHHhcC----CCCEEEEeCC-CCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 88 9999999997 7999999999998765 4689999998 599999999999999999999999985
No 4
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.7e-73 Score=626.82 Aligned_cols=429 Identities=19% Similarity=0.243 Sum_probs=357.7
Q ss_pred CCCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHH
Q 009809 9 GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELRE 87 (525)
Q Consensus 9 ~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (525)
+.+++|||++|||+++||++|||+|+|++|+|| +++||+||+++ +++.+... .
T Consensus 166 ~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~s------i~~~~~~~--~------------------ 219 (700)
T 3rim_A 166 PFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS------IEDDTNIA--L------------------ 219 (700)
T ss_dssp TTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE------TTEEGGGT--C------------------
T ss_pred CCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcc------cccchhhc--c------------------
Confidence 568999999999999999999999999999986 99999999875 23322210 0
Q ss_pred HHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeecc-CCCCHHHHHHHHHHhhhcCCCCCEEEEEEccC
Q 009809 88 VAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPV-DGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK 166 (525)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~k 166 (525)
..+...+|++|||+++ .+ ||||+++|++|+++|++. .++|++|+++|+|
T Consensus 220 ----------------------------~~~~~~~~~a~G~~~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~k 269 (700)
T 3rim_A 220 ----------------------------CEDTAARYRAYGWHVQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVI 269 (700)
T ss_dssp ----------------------------CCCHHHHHHHHTCEEE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCT
T ss_pred ----------------------------chhHHHHHHHcCCeEE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEe
Confidence 0111234899999999 56 999999999999999873 5889999999999
Q ss_pred CCCchhhhhccccccCCCC-------------------CCCCC------------Cc-----------------------
Q 009809 167 GRGYPYAEKAADKYHGVAK-------------------FDPAT------------GK----------------------- 192 (525)
Q Consensus 167 g~g~~~~~~~~~~~h~~~~-------------------~~~~~------------~~----------------------- 192 (525)
|+|++++++ ...+|+.+. |.... |+
T Consensus 270 G~G~~~~e~-~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~ 348 (700)
T 3rim_A 270 GYPAPNLMD-TGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKAL 348 (700)
T ss_dssp TTTCTTTTT-SHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred eecCCccCC-CccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHH
Confidence 999998774 467898762 43211 10
Q ss_pred -------ccC-------C----CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc-----hHHHHHhC------C-
Q 009809 193 -------QFK-------S----SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRRF------P- 242 (525)
Q Consensus 193 -------~~~-------~----~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~-----l~~~~~~~------p- 242 (525)
+++ + .....+++++++++|.+++++||+++++++|++.+++ +..|+++| |
T Consensus 349 ~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~ 428 (700)
T 3rim_A 349 LDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTA 428 (700)
T ss_dssp HHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCE
T ss_pred HHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCc
Confidence 000 0 0134678999999999999999999999999986654 36788888 8
Q ss_pred ---CCeeeccchHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchh
Q 009809 243 ---TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSF 317 (525)
Q Consensus 243 ---~r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~ 317 (525)
+||+|+||+|++|+++|+|+|++ |++||++||..|+.++.+|++ ++|++++||+++.++.|+ .|++|+|||+++
T Consensus 429 ~~~~R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~ir-~~al~~lpvv~v~thdg~gvG~dG~THq~ie 507 (700)
T 3rim_A 429 HWYGRTLHFGVREHAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAVR-LAALMDIDTIYVWTHDSIGLGEDGPTHQPIE 507 (700)
T ss_dssp ETTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTSCSS
T ss_pred ccCCceeecCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHH-HhcCCCCCEEEEEeCCCcccCCCCCccCChh
Confidence 59999999999999999999999 999999999999988888865 589999999999988777 789999999999
Q ss_pred hhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCC--CcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeCC------
Q 009809 318 DVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD--RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE------ 389 (525)
Q Consensus 318 d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~--~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g~------ 389 (525)
|+++||.+||++|++|+|++|++.++++|++..+ +|++||++|+..+. ++.. ..+.+++|+ +++++|.
T Consensus 508 d~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~-~~~~~~~G~-~vlr~g~~~~~~~ 583 (700)
T 3rim_A 508 HLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGT-DAEGVARGG-YVLSDAGGLQPGE 583 (700)
T ss_dssp HHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTC-CHHHHHHSC-EEEECCSCCCTTC
T ss_pred HHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcc-cccccCCCc-EEEecCCccccCC
Confidence 9999999999999999999999999999987655 69999999986432 2211 124567787 7899986
Q ss_pred --cEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcH---HHHHHHhcc-CCeEEEEcCCCCCCHHHHHHHHHH
Q 009809 390 --RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH---ALIRSLAKS-HEVLITVEEGSIGGFGSHVVQFLA 463 (525)
Q Consensus 390 --dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~---~~i~~~~~~-~~~vvvvE~~~~gglg~~v~~~l~ 463 (525)
|++||++|+++..|++|++.|+++||+++|||++|++|||. +.+.++++. ++.+|++|++...||. +++.
T Consensus 584 ~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~ 659 (700)
T 3rim_A 584 EPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVG 659 (700)
T ss_dssp CCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHC
T ss_pred CCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHh
Confidence 99999999999999999999999999999999999999998 455556664 7889999999876664 4444
Q ss_pred HcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhh
Q 009809 464 QDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 464 ~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 512 (525)
+++ .++|+ |.|+.+|+.++|++++||+++.|+++|+++++
T Consensus 660 ~~~--------~~igi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 660 DTG--------EIVSI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp TTC--------EEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred cCC--------cEEcc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 332 56898 99999999999999999999999999998875
No 5
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=3e-73 Score=620.68 Aligned_cols=425 Identities=21% Similarity=0.291 Sum_probs=353.3
Q ss_pred cccccccC-------CCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHH
Q 009809 2 AVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSAL 73 (525)
Q Consensus 2 A~a~~l~~-------~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l 73 (525)
|+|.++.+ .+++|||++|||+++||++||||++|+++++| +++|++||++++ ++.+.. .
T Consensus 127 AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i------~~~~~~---~---- 193 (632)
T 3l84_A 127 AMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISI------EGDVGL---A---- 193 (632)
T ss_dssp HHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGG---T----
T ss_pred HHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCccc------ccchhh---h----
Confidence 45555543 38999999999999999999999999999986 888888888652 222110 0
Q ss_pred hhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcC
Q 009809 74 SRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTK 153 (525)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~ 153 (525)
..++...+|++|||+++ ++||||+++|.+|+++|++
T Consensus 194 -----------------------------------------~~~d~~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~-- 229 (632)
T 3l84_A 194 -----------------------------------------FNENVKMRFEAQGFEVL-SINGHDYEEINKALEQAKK-- 229 (632)
T ss_dssp -----------------------------------------CCCCHHHHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--
T ss_pred -----------------------------------------cChhHHHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--
Confidence 01122345899999999 8999999999999999998
Q ss_pred CCCCEEEEEEccCCCCchhhhhccccccCCC-------------------CCCCCCC------------ccc--------
Q 009809 154 TTGPVLIHVVTEKGRGYPYAEKAADKYHGVA-------------------KFDPATG------------KQF-------- 194 (525)
Q Consensus 154 ~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~-------------------~~~~~~~------------~~~-------- 194 (525)
.++|++|+|+|+||+|+++++ ++.+||+.+ +|++..+ +..
T Consensus 230 ~~~P~lI~v~T~kG~G~~~~e-~~~~~Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~ 308 (632)
T 3l84_A 230 STKPCLIIAKTTIAKGAGELE-GSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKL 308 (632)
T ss_dssp CSSCEEEEEECCTTTTCGGGT-TCGGGSSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeEeeecCCCCC-CcccccCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHh
Confidence 789999999999999999865 567899986 4543211 000
Q ss_pred -------------C-------C---CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchH-HHHHhC-CCCeeecc
Q 009809 195 -------------K-------S---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN-LFLRRF-PTRCFDVG 249 (525)
Q Consensus 195 -------------~-------~---~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~-~~~~~~-p~r~~~~g 249 (525)
+ + .......+++++++|.++++.+|+++++++|++++.+.. .+.++| |+||+|+|
T Consensus 309 ~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~G 388 (632)
T 3l84_A 309 EKSAKKELLERLLNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFG 388 (632)
T ss_dssp HHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECC
T ss_pred hcccCchhhhhhCccchhhhcchhccccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeC
Confidence 0 0 012457889999999999999999999999998664432 123567 99999999
Q ss_pred chHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCC
Q 009809 250 IAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPN 327 (525)
Q Consensus 250 IaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg 327 (525)
|+|++|+++|+|+|+. |+|||++||++|++++++||+ ++|++++||++++++.|+ .|++|+|||+++|+++||.+||
T Consensus 389 IaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~~~~ir-~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~ 467 (632)
T 3l84_A 389 IREHAMAAINNAFARYGIFLPFSATFFIFSEYLKPAAR-IAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPN 467 (632)
T ss_dssp SCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHH-HHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCC
Confidence 9999999999999999 999999999999999999975 589999999999987776 6899999999999999999999
Q ss_pred cEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCce-EEEee--CCcEEEEEechhHHHHH
Q 009809 328 MVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKG-RILIE--GERVALLGYGTAVQSCL 404 (525)
Q Consensus 328 ~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~-~~l~~--g~dv~iva~G~~~~~a~ 404 (525)
++|++|+|++|++.++++|++ .++|++||++|+.. ++.. ..+..+++++ +++++ |.|++|||+|++++.|+
T Consensus 468 l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r~~~----~~~~-~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al 541 (632)
T 3l84_A 468 FLTFRPADGVENVKAWQIALN-ADIPSAFVLSRQKL----KALN-EPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCL 541 (632)
T ss_dssp CEEECCSSHHHHHHHHHHHHH-CSSCEEEECCSSCB----CCCC-CCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHH
T ss_pred CEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcCCCC----CCCc-cccccccccccEEEEecCCCCEEEEEechHHHHHH
Confidence 999999999999999999987 78999999999864 2221 1233456665 89998 89999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeccccccCcHHH--HHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCc
Q 009809 405 AASALLESNGLRLTVADARFCKPLDHAL--IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDR 482 (525)
Q Consensus 405 ~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~--i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~ 482 (525)
+|++.|+++||+++|||++|++|||.+. +.+.+.+ +.||++|++...||++. . + .++|+ |.
T Consensus 542 ~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~sv~~-~~vv~vE~~~~~g~~~~----------~--~---~~iGi-d~ 604 (632)
T 3l84_A 542 ESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLK-GEVIGVEAAHSNELYKF----------C--H---KVYGI-ES 604 (632)
T ss_dssp HHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHHHHCC-SEEEEECSSCCGGGGGT----------C--S---EEECC-CS
T ss_pred HHHHHHHhcCCCeEEEecCcCCCcchhHHHHHHHhcC-CCEEEEeCChhhhHHHH----------h--C---eEEEc-CC
Confidence 9999999999999999999999999874 5555544 68999999987777521 1 1 67998 99
Q ss_pred cCCCCChHHHHHHcCCCHHHHHHHHH
Q 009809 483 YIDHGSPADQLAQAGLTPSHIAATVF 508 (525)
Q Consensus 483 ~~~~g~~~~l~~~~gl~~~~I~~~i~ 508 (525)
|+.+|+.++|+++|||+++.|+++++
T Consensus 605 Fg~sg~~~~l~~~~Glt~~~I~~~i~ 630 (632)
T 3l84_A 605 FGESGKDKDVFERFGFSVSKLVNFIL 630 (632)
T ss_dssp CCCSSCHHHHHHHTTCSHHHHHHHHT
T ss_pred CcccCCHHHHHHHhCcCHHHHHHHHh
Confidence 99999999999999999999999985
No 6
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=6.2e-73 Score=621.97 Aligned_cols=428 Identities=20% Similarity=0.281 Sum_probs=349.6
Q ss_pred CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHH
Q 009809 11 KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 89 (525)
Q Consensus 11 ~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 89 (525)
+++|||++|||+++||++||||++|++++|| +++|++||+++ +++.+.. .
T Consensus 148 d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~------i~~~~~~---~-------------------- 198 (663)
T 3kom_A 148 DHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNIS------IDGDTKG---W-------------------- 198 (663)
T ss_dssp CCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----------CGGG---T--------------------
T ss_pred CCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcc------cccchhh---h--------------------
Confidence 7999999999999999999999999999987 88888888865 2332111 0
Q ss_pred hhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCCC
Q 009809 90 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRG 169 (525)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~g 169 (525)
+.++...+|++|||++++++||||+++|.+|+++|++. .++|++|+|+|+||+|
T Consensus 199 -------------------------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G 252 (663)
T 3kom_A 199 -------------------------FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFG 252 (663)
T ss_dssp -------------------------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTT
T ss_pred -------------------------cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccc
Confidence 01122345899999999889999999999999999873 4789999999999999
Q ss_pred chhhhhccccccCCC------------------CCCCCCC-----------cc---------------------------
Q 009809 170 YPYAEKAADKYHGVA------------------KFDPATG-----------KQ--------------------------- 193 (525)
Q Consensus 170 ~~~~~~~~~~~h~~~------------------~~~~~~~-----------~~--------------------------- 193 (525)
+++++ ++.++|+.+ +|+..++ ..
T Consensus 253 ~~~~e-~~~~~Hg~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~ 331 (663)
T 3kom_A 253 SPEKA-GTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSK 331 (663)
T ss_dssp CTTTT-TCSSTTSSCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHT
T ss_pred cCCCC-CCccccCCCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhcc
Confidence 99875 556899974 3543211 00
Q ss_pred -cC---------------CCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----HHHH-HhCCCCeeeccch
Q 009809 194 -FK---------------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFL-RRFPTRCFDVGIA 251 (525)
Q Consensus 194 -~~---------------~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----~~~~-~~~p~r~~~~gIa 251 (525)
++ ...+..++++|++++|.++++++|+++++++|++++.+. .+|. ++||+||+|+||+
T Consensus 332 ~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIa 411 (663)
T 3kom_A 332 ELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVR 411 (663)
T ss_dssp CCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSC
T ss_pred CCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCcc
Confidence 00 012346789999999999999999999999999877543 2574 8999999999999
Q ss_pred HHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcE
Q 009809 252 EQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMV 329 (525)
Q Consensus 252 E~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~ 329 (525)
|++|+++|+|+|++ |+|||++||++|++++++|++ ++|++++||++++++.|+ .|++|+|||+.+|++++|.+||++
T Consensus 412 E~~~v~~a~GlA~~gG~~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~ 490 (663)
T 3kom_A 412 EFGMAAIMNGLSLYGGIKPYGGTFLVFSDYSRNAIR-MSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLS 490 (663)
T ss_dssp HHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcE
Confidence 99999999999999 999999999999999999975 589999999999877776 689999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCC-CccccCceEEEee--CCcEEEEEechhHHHHHHH
Q 009809 330 VMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKG-IPLEVGKGRILIE--GERVALLGYGTAVQSCLAA 406 (525)
Q Consensus 330 v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~-~~~~~g~~~~l~~--g~dv~iva~G~~~~~a~~A 406 (525)
|++|+|++|++.++++|++..++|++||++|+..+. ++..... ..+..| .+++++ |+|++||++|++++.|++|
T Consensus 491 V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~r~~~p~--~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~A 567 (663)
T 3kom_A 491 VWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMP--VVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKV 567 (663)
T ss_dssp EECCCSHHHHHHHHHHHHHCSSCCEEEECCSSEECC--CCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHH
T ss_pred EEeeCCHHHHHHHHHHHHHhCCCCEEEEccCccCCC--cCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHH
Confidence 999999999999999998767899999999976332 1111000 123444 477887 7899999999999999999
Q ss_pred HHHHHhCCCcEEEEeccccccCcHHH---HHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCcc
Q 009809 407 SALLESNGLRLTVADARFCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRY 483 (525)
Q Consensus 407 a~~L~~~Gi~v~vi~~~~l~P~d~~~---i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~ 483 (525)
+++|+++||+++|||++|++|||.+. +.+++++.+.+|++|++.+.||.+.+ + ...-.++|+ |.|
T Consensus 568 a~~L~~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~-------g----G~~~~~igi-d~F 635 (663)
T 3kom_A 568 ANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYM-------P----KAGGEVKGI-YSF 635 (663)
T ss_dssp HHHHHHTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGC-------C----TTCEEEECC-CSC
T ss_pred HHHHHhcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHh-------c----ccCCcEEEe-cCC
Confidence 99999999999999999999999976 44455666689999998877776332 1 123467998 999
Q ss_pred CCCCChHHHHHHcCCCHHHHHHHHHHH
Q 009809 484 IDHGSPADQLAQAGLTPSHIAATVFNI 510 (525)
Q Consensus 484 ~~~g~~~~l~~~~gl~~~~I~~~i~~~ 510 (525)
+.||+.++|+++|||+++.|+++++++
T Consensus 636 g~sg~~~~l~~~~Glt~e~I~~~~~~~ 662 (663)
T 3kom_A 636 GESAPAEDLFKRFGFTVENISNIVAKY 662 (663)
T ss_dssp CCSSCHHHHHHHHTCSHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHhh
Confidence 999999999999999999999999764
No 7
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=4.3e-73 Score=625.32 Aligned_cols=426 Identities=22% Similarity=0.314 Sum_probs=338.0
Q ss_pred CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHH
Q 009809 11 KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 89 (525)
Q Consensus 11 ~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 89 (525)
+++|||++|||+++||++||||++|+++++| +++|++||++++ ++.+.. .
T Consensus 187 d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i------~~~~~~---~-------------------- 237 (711)
T 3uk1_A 187 DHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISI------DGDVVN---W-------------------- 237 (711)
T ss_dssp CCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGG---T--------------------
T ss_pred CCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCccc------ccchhh---h--------------------
Confidence 8899999999999999999999999999987 888888888652 222110 0
Q ss_pred hhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCCC
Q 009809 90 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRG 169 (525)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~g 169 (525)
+.++...+|++|||+++.++||||+++|.+|+++|++ .++|++|+|+|+||+|
T Consensus 238 -------------------------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G 290 (711)
T 3uk1_A 238 -------------------------FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNG 290 (711)
T ss_dssp -------------------------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC-----
T ss_pred -------------------------cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccC
Confidence 0112234589999999966999999999999999998 6899999999999999
Q ss_pred chhhhhccccccCCC------------------CCCCCC-----------Ccc---------------------------
Q 009809 170 YPYAEKAADKYHGVA------------------KFDPAT-----------GKQ--------------------------- 193 (525)
Q Consensus 170 ~~~~~~~~~~~h~~~------------------~~~~~~-----------~~~--------------------------- 193 (525)
++..+ ++.+||+.+ +|+..+ |+.
T Consensus 291 ~~~~e-~~~~~Hg~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~ 369 (711)
T 3uk1_A 291 AATKA-GGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRM 369 (711)
T ss_dssp ----------------CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCC-CcccccCCCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhh
Confidence 97654 667899875 454322 110
Q ss_pred ---cCC---------------CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----HHHHHh---CC---CC
Q 009809 194 ---FKS---------------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR---FP---TR 244 (525)
Q Consensus 194 ---~~~---------------~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----~~~~~~---~p---~r 244 (525)
+++ ..+..+++++++++|.++++++|+++++++|+++++++ ..|+++ || +|
T Consensus 370 ~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R 449 (711)
T 3uk1_A 370 AGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGN 449 (711)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCS
T ss_pred ccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCc
Confidence 000 02345788999999999999999999999999866443 468888 99 99
Q ss_pred eeeccchHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhh
Q 009809 245 CFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFM 322 (525)
Q Consensus 245 ~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~ 322 (525)
|+|+||+|++|+++|+|+|++ |++||+++|++|++++++||+ ++|++++||++++++.|+ .|++|+|||+++|+++|
T Consensus 450 ~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~f~~F~~~~~~~ir-~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~l 528 (711)
T 3uk1_A 450 HINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALR-VAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASL 528 (711)
T ss_dssp EEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHH
T ss_pred EEEeCccHHHHHHHHHHHHHcCCCEEEEEEhHHHHHHHHHHHH-HhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHH
Confidence 999999999999999999995 999999999999999999975 478999999999988776 68999999999999999
Q ss_pred hcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCC-CCccccCceEEEee--C----CcEEEEE
Q 009809 323 ACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--G----ERVALLG 395 (525)
Q Consensus 323 ~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~-~~~~~~g~~~~l~~--g----~dv~iva 395 (525)
|.+||++|++|+|++|++.++++|++ .++|+|||++|+..+. ++.... .+.+..|+ +++++ | .|++||+
T Consensus 529 r~iPnl~V~~Pad~~E~~~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia 604 (711)
T 3uk1_A 529 RLIPNLDVWRPADTVETAVAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGG-YVLRDWDEEIVARKIILIA 604 (711)
T ss_dssp HTSTTCEEECCSSHHHHHHHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEE
T ss_pred hcCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCe-EEEEecCCCCCCCCEEEEE
Confidence 99999999999999999999999987 7899999999986432 111100 03455666 57774 6 7999999
Q ss_pred echhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHH--HHH-HhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCc
Q 009809 396 YGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL--IRS-LAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTV 472 (525)
Q Consensus 396 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~--i~~-~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~ 472 (525)
+|++++.|++|++.|+++||+++|||++|++|||.+. +++ +++..+.+|++|++..+||++.+ . .
T Consensus 605 ~G~~v~~al~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g--------~ 672 (711)
T 3uk1_A 605 TGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----G--------L 672 (711)
T ss_dssp CTTHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----T--------T
T ss_pred ecHHHHHHHHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----C--------C
Confidence 9999999999999999999999999999999999875 344 44444569999999888887443 2 2
Q ss_pred ceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 473 KWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 473 ~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
+..++|+ |.|+.||+.++|+++|||+++.|++++++++
T Consensus 673 ~~~~iGi-d~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 673 EGGVVGI-DTFGESAPAGVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp TSEEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CceEEEe-CCCcCcCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3467998 8999999999999999999999999999876
No 8
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=2.1e-72 Score=618.80 Aligned_cols=428 Identities=21% Similarity=0.309 Sum_probs=349.4
Q ss_pred CCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHH
Q 009809 11 KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 89 (525)
Q Consensus 11 ~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 89 (525)
+++|||++|||++++|++||||++|+++++| +++|++||+++ +++.... .
T Consensus 172 d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~------i~~~~~~---~-------------------- 222 (690)
T 3m49_A 172 DHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDIS------LDGDLNR---S-------------------- 222 (690)
T ss_dssp CCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBC------SSSBGGG---T--------------------
T ss_pred CCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCee------cccchhh---c--------------------
Confidence 8999999999999999999999999999976 88888888865 2332210 0
Q ss_pred hhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCCC
Q 009809 90 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRG 169 (525)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~g 169 (525)
..++...+|++|||+++.++||||+++|.+|++++++. .++|++|+|+|+||+|
T Consensus 223 -------------------------~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G 276 (690)
T 3m49_A 223 -------------------------FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFG 276 (690)
T ss_dssp -------------------------CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTT
T ss_pred -------------------------cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccc
Confidence 01112345899999999766999999999999999873 4789999999999999
Q ss_pred chhhhhccccccCCC-------------------CCCCCCCc--------------------------------------
Q 009809 170 YPYAEKAADKYHGVA-------------------KFDPATGK-------------------------------------- 192 (525)
Q Consensus 170 ~~~~~~~~~~~h~~~-------------------~~~~~~~~-------------------------------------- 192 (525)
++.. +++.+|||.+ +|++.++.
T Consensus 277 ~~~~-~~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~ 355 (690)
T 3m49_A 277 SPNK-SGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQ 355 (690)
T ss_dssp CTTT-TTSGGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred cCcc-cCcccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHH
Confidence 9764 4678899986 35433220
Q ss_pred -----ccC-------C---CCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----HHHHHh-CCCCeeeccch
Q 009809 193 -----QFK-------S---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR-FPTRCFDVGIA 251 (525)
Q Consensus 193 -----~~~-------~---~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----~~~~~~-~p~r~~~~gIa 251 (525)
+++ + ......++++++++|.++++++|+++++++|+++++++ .+|.++ +|+||+|+||+
T Consensus 356 ~~~~~~lp~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIa 435 (690)
T 3m49_A 356 AAMNGLLPEGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVR 435 (690)
T ss_dssp HHHTTCCCTTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSC
T ss_pred HHhcccCchhhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCch
Confidence 000 0 11235789999999999999999999999999865443 356654 58999999999
Q ss_pred HHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcE
Q 009809 252 EQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMV 329 (525)
Q Consensus 252 E~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~ 329 (525)
|++|+++|+|+|++ |+|||++||..|..++..++ +++|++++||++++++.|+ .|++|+|||+++|+++||.|||++
T Consensus 436 E~~mv~~A~GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~ 514 (690)
T 3m49_A 436 EFAMGAAMNGIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVS 514 (690)
T ss_dssp HHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCE
Confidence 99999999999999 89999999877776555565 4689999999999999888 799999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCC--CCccccCceEEEeeCC----cEEEEEechhHHHH
Q 009809 330 VMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNK--GIPLEVGKGRILIEGE----RVALLGYGTAVQSC 403 (525)
Q Consensus 330 v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~--~~~~~~g~~~~l~~g~----dv~iva~G~~~~~a 403 (525)
|++|+|++|++.++++|++..++|++||++|+..+.. +.... .+.++.|+ +++++|. |++|||+|++++.|
T Consensus 515 V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~--~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~A 591 (690)
T 3m49_A 515 VIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTL--EGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLA 591 (690)
T ss_dssp EECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEEECC--HHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHH
T ss_pred EEeeCCHHHHHHHHHHHHHcCCCCEEEEeecccCCCC--CccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHH
Confidence 9999999999999999987657899999999863321 11000 13456676 7889875 99999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeccccccCcH---HHHHHHh-ccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeec
Q 009809 404 LAASALLESNGLRLTVADARFCKPLDH---ALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 404 ~~Aa~~L~~~Gi~v~vi~~~~l~P~d~---~~i~~~~-~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~ 479 (525)
++|++.|+++||+++|||++|++|||. +.+.+++ ++++++|++|++...||. +++...+ .++|+
T Consensus 592 l~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi 659 (690)
T 3m49_A 592 VEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI 659 (690)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC
T ss_pred HHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc
Confidence 999999999999999999999999985 4555555 357889999999876664 4444322 35887
Q ss_pred CCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 480 PDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 480 ~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
|.|+.+|+.++|++++||+++.|+++|++++
T Consensus 660 -d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 660 -DTFGASAPGEKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp -CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred -CcCcCcCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 9999999999999999999999999998764
No 9
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=4e-71 Score=611.94 Aligned_cols=425 Identities=24% Similarity=0.313 Sum_probs=357.8
Q ss_pred CCCeEEEEEcccccccchhHHHHHhccccCC-CEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHH
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREV 88 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l-~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~ 88 (525)
++++|||++|||+++||++||||++|++++| |+++|++||++++ ++.+.. .
T Consensus 158 ~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i------~~~~~~---~------------------- 209 (675)
T 1itz_A 158 VDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISI------DGDTEI---A------------------- 209 (675)
T ss_dssp CCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGG---T-------------------
T ss_pred CCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccC------CCChhh---h-------------------
Confidence 7899999999999999999999999999997 6999998888652 222110 0
Q ss_pred HhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCC-CHHHHHHHHHHhhhcCCCCCEEEEEEccCC
Q 009809 89 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKG 167 (525)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~-d~~~l~~al~~a~~~~~~~P~~i~v~t~kg 167 (525)
+.++...+|++|||++++++||| |+++|.+|+++|++. .++|++|+++|.||
T Consensus 210 --------------------------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg 262 (675)
T 1itz_A 210 --------------------------FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIG 262 (675)
T ss_dssp --------------------------CCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTT
T ss_pred --------------------------cChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecc
Confidence 01122345899999999889999 999999999999863 47899999999999
Q ss_pred CCchhhhhccccccCCC------------------CCCCCCCc------------------------------cc-----
Q 009809 168 RGYPYAEKAADKYHGVA------------------KFDPATGK------------------------------QF----- 194 (525)
Q Consensus 168 ~g~~~~~~~~~~~h~~~------------------~~~~~~~~------------------------------~~----- 194 (525)
+|+++++ ++.++|+.+ +|+..++. ..
T Consensus 263 ~G~~~~~-~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~ 341 (675)
T 1itz_A 263 FGSPNKA-NSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLK 341 (675)
T ss_dssp TTCTTTT-TSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred cCccccc-CcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHH
Confidence 9999875 567899973 45442210 00
Q ss_pred -------C-----------CCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----HHHHH-hCCCCeeeccc
Q 009809 195 -------K-----------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGI 250 (525)
Q Consensus 195 -------~-----------~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----~~~~~-~~p~r~~~~gI 250 (525)
+ ...+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||+|+||
T Consensus 342 ~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gI 421 (675)
T 1itz_A 342 SIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGV 421 (675)
T ss_dssp HHHHCCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCS
T ss_pred HHhcccCCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecc
Confidence 0 112456899999999999999999999999999866543 34786 99999999999
Q ss_pred hHHHHHHHHHHHhcCC--CeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCC
Q 009809 251 AEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPN 327 (525)
Q Consensus 251 aE~~~~~~a~G~A~~G--~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg 327 (525)
+|++|+++|+|+|++| +|||++||++|+.++++||+ ++|++++||+++.++.|. .|++|+|||+.+|++++|.+||
T Consensus 422 aE~~~v~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~ 500 (675)
T 1itz_A 422 REHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMR-ISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPN 500 (675)
T ss_dssp CHHHHHHHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSS
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEEHHHHHHHHHHHHH-HHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCC
Confidence 9999999999999999 99999999999999999965 489999999999977776 6889999999999999999999
Q ss_pred cEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCC-ccccCceEEEee---C--CcEEEEEechhHH
Q 009809 328 MVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIE---G--ERVALLGYGTAVQ 401 (525)
Q Consensus 328 ~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~-~~~~g~~~~l~~---g--~dv~iva~G~~~~ 401 (525)
++|++|+|++|++.++++|++..++|++||++|+..+. ++. ..+ .+++| .+++++ | +|++||++|++++
T Consensus 501 l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~--~~~--~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~ 575 (675)
T 1itz_A 501 ILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPH--LPG--TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELE 575 (675)
T ss_dssp CEEECCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBCC--CTT--CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHH
T ss_pred eEEEECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC--ccccccccC-CEEEecccCCCCCCEEEEEECHHHH
Confidence 99999999999999999999755899999999987432 221 122 35677 688888 7 8999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCcHHH---HHHHhccC-CeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEe
Q 009809 402 SCLAASALLESNGLRLTVADARFCKPLDHAL---IRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPL 477 (525)
Q Consensus 402 ~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~---i~~~~~~~-~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~i 477 (525)
.|++|++.|+++||+++||+++|++|||.+. +.+++++. +++|++|++..+||++.+ ..+..++
T Consensus 576 ~al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~------------~~~~~~i 643 (675)
T 1itz_A 576 IAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYV------------GAQGKAI 643 (675)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHH------------CSSCEEE
T ss_pred HHHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhc------------CCCceEE
Confidence 9999999999999999999999999999874 66777764 789999999888998532 1345789
Q ss_pred ecCCccCCCCChHHHHHHcCCCHHHHHHHHHH
Q 009809 478 VLPDRYIDHGSPADQLAQAGLTPSHIAATVFN 509 (525)
Q Consensus 478 g~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~ 509 (525)
|+ |.|+.+|+.++|+++||++++.|++++++
T Consensus 644 g~-d~fg~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 644 GI-DKFGASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CC-CSCCCSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred Ee-CCCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99 99999999999999999999999999864
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=3.6e-71 Score=610.57 Aligned_cols=422 Identities=22% Similarity=0.295 Sum_probs=355.4
Q ss_pred CCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHH
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREV 88 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~ 88 (525)
++++|||++|||++++|++|||||+|+++++| +++||+||++++ ++.... .+
T Consensus 149 ~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i------~~~~~~--~~------------------- 201 (651)
T 2e6k_A 149 VDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISI------DGPTDL--AF------------------- 201 (651)
T ss_dssp CCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEET------TEEGGG--TC-------------------
T ss_pred CCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccc------cccccc--cc-------------------
Confidence 68999999999999999999999999999987 889998888652 221110 00
Q ss_pred HhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCC
Q 009809 89 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGR 168 (525)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~ 168 (525)
.++...+|++|||++++++||||+++|++|+++|++ .++|++|+++|.||+
T Consensus 202 ---------------------------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~ 252 (651)
T 2e6k_A 202 ---------------------------TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGF 252 (651)
T ss_dssp ---------------------------CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTT
T ss_pred ---------------------------CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEecc
Confidence 112234589999999988999999999999999998 689999999999999
Q ss_pred CchhhhhccccccCCC------------------CCCCCCCcc-------------------c------C----------
Q 009809 169 GYPYAEKAADKYHGVA------------------KFDPATGKQ-------------------F------K---------- 195 (525)
Q Consensus 169 g~~~~~~~~~~~h~~~------------------~~~~~~~~~-------------------~------~---------- 195 (525)
|++ .+++.+||+.+ +|+..++.. + .
T Consensus 253 G~~--~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 330 (651)
T 2e6k_A 253 GSP--KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRR 330 (651)
T ss_dssp TST--TTTSGGGTSSCCHHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccc--ccccccccccCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHH
Confidence 999 45678899876 454432100 0 0
Q ss_pred ---C-C---------CCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----HHHHH-hCCCCeeeccchHHHHH
Q 009809 196 ---S-S---------ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGIAEQHAV 256 (525)
Q Consensus 196 ---~-~---------~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----~~~~~-~~p~r~~~~gIaE~~~~ 256 (525)
. + .+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||+|+||+|++|+
T Consensus 331 ~~~~~p~~~~~~~~~~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~ 410 (651)
T 2e6k_A 331 LRGELPPLPEEPPSFDKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMG 410 (651)
T ss_dssp HTTCCCCCCCSCCCCCSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHH
T ss_pred hcCcCCchhhhccccCccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHH
Confidence 0 0 1256899999999999999999999999999876554 45886 99999999999999999
Q ss_pred HHHHHHhcCC-CeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccC
Q 009809 257 TFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPS 334 (525)
Q Consensus 257 ~~a~G~A~~G-~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~ 334 (525)
++|+|+|++| +|||++||++|+.++++|| +++|++++||++++++.|. .|++|+|||+.+|++++|.+|||+|++|+
T Consensus 411 ~~a~GlA~~Gg~~P~~~t~~~F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pa 489 (651)
T 2e6k_A 411 AILNGLNLHGGYRAYGGTFLVFSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPA 489 (651)
T ss_dssp HHHHHHHHHSSCEEEEEEEGGGGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCS
T ss_pred HHHHHHHHcCCCEEEEEeHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecC
Confidence 9999999998 9999999999998999996 5589999999999877776 68899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCccccCceEEEeeC--CcEEEEEechhHHHHHHHHHHHHh
Q 009809 335 DEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLES 412 (525)
Q Consensus 335 ~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~~~~g~~~~l~~g--~dv~iva~G~~~~~a~~Aa~~L~~ 412 (525)
|++|++.++++|++..++|++||++|+..+. ++.. ....+..| .++++++ +|++||++|+++..|++|++.|++
T Consensus 490 d~~E~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~ 565 (651)
T 2e6k_A 490 DAYETFYAWLVALRRKEGPTALVLTRQAVPL--LSPE-KARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLRE 565 (651)
T ss_dssp SHHHHHHHHHHHHHCCSSCEEEECCSSCBCC--CCHH-HHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC--CCcc-hhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHh
Confidence 9999999999999755789999999986432 1110 00134556 5888887 899999999999999999999999
Q ss_pred CCCcEEEEeccccccCcHHH---HHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCCh
Q 009809 413 NGLRLTVADARFCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSP 489 (525)
Q Consensus 413 ~Gi~v~vi~~~~l~P~d~~~---i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~ 489 (525)
+||+++||+++|++|||.+. +.+++++++++|++|++..+||++.+ + .++|+ |.|+++|+.
T Consensus 566 ~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg~~ 629 (651)
T 2e6k_A 566 KGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASAPY 629 (651)
T ss_dssp TTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSCCT
T ss_pred cCCcEEEEecCcCCccccccHHHHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCCCH
Confidence 99999999999999999984 77777777789999999888887432 2 67999 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 009809 490 ADQLAQAGLTPSHIAATVFNI 510 (525)
Q Consensus 490 ~~l~~~~gl~~~~I~~~i~~~ 510 (525)
++|++++|++++.|+++++++
T Consensus 630 ~~l~~~~gl~~~~I~~~i~~~ 650 (651)
T 2e6k_A 630 PEVYERLGFTPERVAEAFLSL 650 (651)
T ss_dssp THHHHHTTCCHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 999999999999999999865
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=7.9e-71 Score=609.55 Aligned_cols=431 Identities=20% Similarity=0.287 Sum_probs=357.0
Q ss_pred CCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHH
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREV 88 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~ 88 (525)
.+++|||++|||+++||++|||||+|+++++| +++|++||++++ ++.... .+
T Consensus 145 ~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i------~~~~~~--~~------------------- 197 (669)
T 2r8o_A 145 VDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI------DGHVEG--WF------------------- 197 (669)
T ss_dssp CCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGG--TC-------------------
T ss_pred cCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEe------cccccc--cc-------------------
Confidence 48899999999999999999999999999987 889998888652 221110 00
Q ss_pred HhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCC
Q 009809 89 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGR 168 (525)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~ 168 (525)
.++...+|++|||++++++||||+++|.+|+++|++. .++|++|+++|.||+
T Consensus 198 ---------------------------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~ 249 (669)
T 2r8o_A 198 ---------------------------TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGF 249 (669)
T ss_dssp ---------------------------CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTT
T ss_pred ---------------------------CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEecc
Confidence 1112335899999999889999999999999999873 478999999999999
Q ss_pred CchhhhhccccccCCC------------------CCCCCCC-----------c---------------------------
Q 009809 169 GYPYAEKAADKYHGVA------------------KFDPATG-----------K--------------------------- 192 (525)
Q Consensus 169 g~~~~~~~~~~~h~~~------------------~~~~~~~-----------~--------------------------- 192 (525)
|+++.+ ++..+|+.+ +|++.++ +
T Consensus 250 G~~~~~-~~~~~H~~~~~~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 328 (669)
T 2r8o_A 250 GSPNKA-GTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRR 328 (669)
T ss_dssp TCTTTT-TSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CcCCcC-CCCcccCCCCCHHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 998744 556889863 3443211 0
Q ss_pred ---ccC---------------CCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----HHHHHhCCCCeeecc
Q 009809 193 ---QFK---------------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVG 249 (525)
Q Consensus 193 ---~~~---------------~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----~~~~~~~p~r~~~~g 249 (525)
.++ ...+..+++++++++|.++++.+|+++++++|+++++++ ..|+++||+||+|+|
T Consensus 329 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~G 408 (669)
T 2r8o_A 329 MKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYG 408 (669)
T ss_dssp HHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECC
T ss_pred hcccCChhhhhhhHHHhhhhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecc
Confidence 011 112356789999999999999999999999999866543 368889999999999
Q ss_pred chHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCC
Q 009809 250 IAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPN 327 (525)
Q Consensus 250 IaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg 327 (525)
|+|++|+++|+|+|++ |++||+.+|++|+.++++||++ +|++++||++++++.|+ .|++|+|||+.+|++++|.+||
T Consensus 409 IaE~~~v~~a~GlA~~gG~~P~~~tf~~F~~~~~~~ir~-~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~ 487 (669)
T 2r8o_A 409 VREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRM-AALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPN 487 (669)
T ss_dssp SCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGTTHHHHHH-HHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTT
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCC
Confidence 9999999999999999 8999999999999999999765 89999999999987776 6889999999999999999999
Q ss_pred cEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCC-CccccCceEEEee--C-CcEEEEEechhHHHH
Q 009809 328 MVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKG-IPLEVGKGRILIE--G-ERVALLGYGTAVQSC 403 (525)
Q Consensus 328 ~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~-~~~~~g~~~~l~~--g-~dv~iva~G~~~~~a 403 (525)
++|++|+|++|++.++++|++..++|++||++|+..+. ++...+. ..+++| .+++++ | +|++||++|+++..|
T Consensus 488 l~V~~Pad~~E~~~~l~~a~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~a 564 (669)
T 2r8o_A 488 MSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELA 564 (669)
T ss_dssp CEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHH
T ss_pred CEEEecCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHH
Confidence 99999999999999999999765899999999986432 2211100 125566 478888 7 899999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeccccccCcHH---HHHHHhccC-CeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeec
Q 009809 404 LAASALLESNGLRLTVADARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 404 ~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~---~i~~~~~~~-~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~ 479 (525)
++|++.|+++||+++||+++|++|||.+ .+.+++++. +++|++|++..+||++ ++.+++ .++|+
T Consensus 565 l~Aa~~L~~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~ 632 (669)
T 2r8o_A 565 VAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM 632 (669)
T ss_dssp HHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE
T ss_pred HHHHHHHHhcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc
Confidence 9999999999999999999999999987 477777764 7899999998888874 443322 45888
Q ss_pred CCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 480 PDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 480 ~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
|.|+.+|+.++|+++|||+++.|++++++++..
T Consensus 633 -d~fg~sg~~~~l~~~~Gl~~~~I~~~~~~~~~~ 665 (669)
T 2r8o_A 633 -TTFGESAPAELLFEEFGFTVDNVVAKAKELLHH 665 (669)
T ss_dssp -CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHC--
T ss_pred -CCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999854
No 12
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.6e-70 Score=603.53 Aligned_cols=425 Identities=20% Similarity=0.262 Sum_probs=356.6
Q ss_pred CCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHH
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREV 88 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~ 88 (525)
.+++|||++|||+++||++|||+++|++++|| +++|++||+++ +++.+... +
T Consensus 147 ~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~------i~~~~~~~--~------------------- 199 (673)
T 1r9j_A 147 VDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYIS------IDGSTSLS--F------------------- 199 (673)
T ss_dssp CCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBC------SSSBGGGT--C-------------------
T ss_pred CCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCc------cccchhhc--c-------------------
Confidence 58999999999999999999999999999986 99999888865 23322210 0
Q ss_pred HhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCC-CCHHHHHHHHHHhhhcCCCCCEEEEEEccCC
Q 009809 89 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 167 (525)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG-~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg 167 (525)
..+...+|++|||+++..+|| ||+++|.+|+++|++. .++|++|+++|+||
T Consensus 200 ---------------------------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg 251 (673)
T 1r9j_A 200 ---------------------------TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIG 251 (673)
T ss_dssp ---------------------------CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTT
T ss_pred ---------------------------CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccc
Confidence 111133589999999978999 9999999999999863 57899999999999
Q ss_pred CCchhhhhccccccCCC-------------------CCCCCCC------------c------------------------
Q 009809 168 RGYPYAEKAADKYHGVA-------------------KFDPATG------------K------------------------ 192 (525)
Q Consensus 168 ~g~~~~~~~~~~~h~~~-------------------~~~~~~~------------~------------------------ 192 (525)
+|++ .++...+|+.+ +|....+ .
T Consensus 252 ~G~~--~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~ 329 (673)
T 1r9j_A 252 FGSS--KQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAF 329 (673)
T ss_dssp TTST--TTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cccc--cCCCcccccCCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHH
Confidence 9998 34567889864 2221110 0
Q ss_pred ------ccCC-------C-CCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchH--H-----HHH-hCCCCeeeccc
Q 009809 193 ------QFKS-------S-ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN--L-----FLR-RFPTRCFDVGI 250 (525)
Q Consensus 193 ------~~~~-------~-~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l~--~-----~~~-~~p~r~~~~gI 250 (525)
.++. . .+..+++++++++|.++++++|+++++++|+++++++. + |.+ +||+||+|+||
T Consensus 330 ~~~~~~~~p~~~~~~~p~~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GI 409 (673)
T 1r9j_A 330 VAQMRGELPSGWEAKLPTNSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGV 409 (673)
T ss_dssp HHHHTTCCCTTTGGGSCCCCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCS
T ss_pred HHHhcCCCCchhhhhccccccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCc
Confidence 0000 0 13568899999999999999999999999998665442 2 776 99999999999
Q ss_pred hHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCc
Q 009809 251 AEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNM 328 (525)
Q Consensus 251 aE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~ 328 (525)
+|++|+++|+|+|++ |++||+++|++|+.++++||++ +|++++||++++++.|. .|++|+|||+.+|++++|.+||+
T Consensus 410 aE~~~~~~a~GlA~~GG~~P~~~~~~~F~~~~~~~ir~-~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l 488 (673)
T 1r9j_A 410 REHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRL-AAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNL 488 (673)
T ss_dssp CHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHHH-HHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCC
Confidence 999999999999999 5999999999999999999755 89999999999987776 68899999999999999999999
Q ss_pred EEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCC-ccccCceEEEeeC--CcEEEEEechhHHHHHH
Q 009809 329 VVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIEG--ERVALLGYGTAVQSCLA 405 (525)
Q Consensus 329 ~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~-~~~~g~~~~l~~g--~dv~iva~G~~~~~a~~ 405 (525)
+|++|+|++|++.++++|++..++|++||++|++.+. ++. ..+ .++.| .+++++| +|++||++|+++..|++
T Consensus 489 ~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~ 563 (673)
T 1r9j_A 489 QVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEP--QSG--SSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVD 563 (673)
T ss_dssp EEECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEECC--CTT--CCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCC--CCC--cccccccCC-CEEEeeCCCCCEEEEEechhHHHHHH
Confidence 9999999999999999999765899999999986432 222 122 35677 6888988 89999999999999999
Q ss_pred HHHHHHhCCCcEEEEeccccccCcHHH---HHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCc
Q 009809 406 ASALLESNGLRLTVADARFCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDR 482 (525)
Q Consensus 406 Aa~~L~~~Gi~v~vi~~~~l~P~d~~~---i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~ 482 (525)
|++.|+++ |+++||+++|++|||.+. +.+++++++++|++|++..+||++.+ ++. +|+ |.
T Consensus 564 Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~ 626 (673)
T 1r9j_A 564 AAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SG 626 (673)
T ss_dssp HHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SS
T ss_pred HHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-cc
Confidence 99999988 999999999999999884 88899888889999999888887432 122 898 89
Q ss_pred cCCCCChHHHHHHcCCCHHHHHHHHHHHhhcc
Q 009809 483 YIDHGSPADQLAQAGLTPSHIAATVFNILGQT 514 (525)
Q Consensus 483 ~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~ 514 (525)
|+++|+.++|++++|++++.|+++|++++.+.
T Consensus 627 f~~sg~~~~L~~~~g~~~~~I~~~i~~~l~~~ 658 (673)
T 1r9j_A 627 FGASAPAGVLYKKFGITVEEVVRTGRELAKRF 658 (673)
T ss_dssp CCCSSCHHHHHHHTTCSHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998553
No 13
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.1e-69 Score=600.92 Aligned_cols=426 Identities=20% Similarity=0.280 Sum_probs=354.1
Q ss_pred CCCeEEEEEcccccccchhHHHHHhccccCCC-EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHH
Q 009809 10 RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREV 88 (525)
Q Consensus 10 ~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~-l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~ 88 (525)
.+++|||++|||+++||++|||||+|+++++| +++||+||++++ ++.... .+
T Consensus 147 ~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i------~~~~~~--~~------------------- 199 (680)
T 1gpu_A 147 SDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITI------DGATSI--SF------------------- 199 (680)
T ss_dssp CCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGG--TC-------------------
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceE------eccccc--cc-------------------
Confidence 48899999999999999999999999999987 999998888652 221110 00
Q ss_pred HhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCC-CHHHHHHHHHHhhhcCCCCCEEEEEEccCC
Q 009809 89 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKG 167 (525)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~-d~~~l~~al~~a~~~~~~~P~~i~v~t~kg 167 (525)
.++...+|++|||++++++||| |+++|.+++++|++. .++|++|+++|.||
T Consensus 200 ---------------------------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg 251 (680)
T 1gpu_A 200 ---------------------------DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIG 251 (680)
T ss_dssp ---------------------------CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTT
T ss_pred ---------------------------CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecc
Confidence 1112335899999999889999 999999999999872 47899999999999
Q ss_pred CCchhhhhccccccCCC-------------------CCCCCCCc------------------------------c-----
Q 009809 168 RGYPYAEKAADKYHGVA-------------------KFDPATGK------------------------------Q----- 193 (525)
Q Consensus 168 ~g~~~~~~~~~~~h~~~-------------------~~~~~~~~------------------------------~----- 193 (525)
+|++ .+++..+|+.+ +|+..++. +
T Consensus 252 ~G~~--~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~ 329 (680)
T 1gpu_A 252 YGSL--HAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAE 329 (680)
T ss_dssp TTST--TTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccc--cCCCCccCCCCCCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHH
Confidence 9998 34556889875 45432210 0
Q ss_pred --------cC-----------CCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----HHHHH------hCCC
Q 009809 194 --------FK-----------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR------RFPT 243 (525)
Q Consensus 194 --------~~-----------~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-----~~~~~------~~p~ 243 (525)
++ ...+..+++++++++|.++++++|+++++++|++.++++ ..|++ +||+
T Consensus 330 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~ 409 (680)
T 1gpu_A 330 LARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSG 409 (680)
T ss_dssp HHHHHTTCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTC
T ss_pred HHHHhcccCCchhhhhchhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCC
Confidence 00 012456899999999999999999999999999866543 35777 8999
Q ss_pred CeeeccchHHHHHHHHHHHhcCC-Ce-EEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEG-LK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVT 320 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G-~~-pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~ 320 (525)
||+|+||+|++|+++|+|+|++| ++ ||+++|++|+.++++||+. +|++++||++++++.|. .|++|+|||+.+|++
T Consensus 410 R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~~~f~~F~~~~~~air~-~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla 488 (680)
T 1gpu_A 410 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRL-SALSGHPVIWVATHDSIGVGEDGPTHQPIETLA 488 (680)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHCTTCEEEEEEEHHHHGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred ceecCCccHHHHHHHHHHHHhcCCCceEEEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCccccCCCCCccCCHHHHH
Confidence 99999999999999999999998 99 9999999999999999755 89999999999987776 688999999999999
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCCCc-cccCceEEEeeC--CcEEEEEec
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIP-LEVGKGRILIEG--ERVALLGYG 397 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~~-~~~g~~~~l~~g--~dv~iva~G 397 (525)
++|.+||++|++|+|++|++.++++|++..++|++||++|+..+. ++.. .+. +++| .+++++| +|++||++|
T Consensus 489 ~lr~iP~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~~--~~~~~~~G-~~vl~~g~~~dvtiva~G 563 (680)
T 1gpu_A 489 HFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQ--LEGS--SIESASKG-GYVLQDVANPDIILVATG 563 (680)
T ss_dssp HHHTSSSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBCC--CTTC--CHHHHTTS-CEEEECCSSCSEEEEECT
T ss_pred HhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCCc--chhhccCC-CEEEecCCCCCEEEEEEc
Confidence 999999999999999999999999999755899999999987433 2211 122 5566 4888987 899999999
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHH---HHHHHhccC-CeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcc
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVK 473 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~---~i~~~~~~~-~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~ 473 (525)
+++..|++|++.|+++||+++|||++|++|||.+ .+.+++++. +. |++|++..+||++.+ ..
T Consensus 564 ~~v~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v------------~~- 629 (680)
T 1gpu_A 564 SEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA------------HQ- 629 (680)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTC------------SE-
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhc------------Cc-
Confidence 9999999999999999999999999999999988 466666664 55 999999888887432 11
Q ss_pred eEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhccc
Q 009809 474 WRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 515 (525)
Q Consensus 474 ~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~ 515 (525)
++|+ +.|+.+|+.++|++++|++++.|+++|+++++..+
T Consensus 630 --~~gv-~~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~ 668 (680)
T 1gpu_A 630 --SFGI-DRFGASGKAPEVFKFFGFTPEGVAERAQKTIAFYK 668 (680)
T ss_dssp --EECC-CSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHHHHT
T ss_pred --ceee-CcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHhhc
Confidence 1787 79999999999999999999999999999986543
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=1.8e-67 Score=591.01 Aligned_cols=491 Identities=18% Similarity=0.193 Sum_probs=374.7
Q ss_pred cccccc-------cCCCCeEEEEEcccccccchhHHHHHhccccCC-CEEEEEECCCCCcCCCCCCCCCCCcchhhhHHH
Q 009809 2 AVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSAL 73 (525)
Q Consensus 2 A~a~~l-------~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l-~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l 73 (525)
|+|+++ ++.+++||||+|||+++||++|||||+|++++| |++|||+||+++ +|+++...+.+...|
T Consensus 205 A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~s------i~~~v~~~~~~~~~l 278 (886)
T 2qtc_A 205 AKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQR------LDGPVTGNGKIINEL 278 (886)
T ss_dssp HHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBC------SSSBSCTTSCHHHHH
T ss_pred HHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcc------cCCCccccccccHHH
Confidence 556665 788999999999999999999999999999996 599999999987 577666544567888
Q ss_pred hhhhcChhhHHHHHH----Hhhhhccc-CCchHHHHHHHHH------------HH-hccccC--Cccc---cccccCceE
Q 009809 74 SRLQSNRPLRELREV----AKGVTKQI-GGPMHELAAKVDE------------YA-RGMISG--SGST---LFEELGLYY 130 (525)
Q Consensus 74 ~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~------------~~-~~~~~~--~~~~---~~~~~g~~~ 130 (525)
++.+.+.+|+.++.. ++.++.+- +..+.+...+..+ |. .++|.. .... -+.+.|++|
T Consensus 279 ~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~ 358 (886)
T 2qtc_A 279 EGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWA 358 (886)
T ss_dssp HHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHT
T ss_pred HHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhh
Confidence 888888888766432 33333332 2223333332211 22 223322 1112 244558999
Q ss_pred eeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEccCCCCchhhhhccccccCCC--------------------------
Q 009809 131 IGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA-------------------------- 184 (525)
Q Consensus 131 ~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~kg~g~~~~~~~~~~~h~~~-------------------------- 184 (525)
+ ++||||+.+|++|+++|++. .++|++|+++|+||+|++++.+++..+|+..
T Consensus 359 l-~~dGhD~~~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~ 436 (886)
T 2qtc_A 359 L-NRGGHDPKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKL 436 (886)
T ss_dssp C-CBGGGCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTC
T ss_pred c-ccCCCCHHHHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccc
Confidence 9 99999999999999999874 3689999999999999987777778899863
Q ss_pred CCCCCC-----------------Cc-c-----------cC----------CCCCcccHHHHHHHHHHHHHhcC---CCEE
Q 009809 185 KFDPAT-----------------GK-Q-----------FK----------SSARTQSYTTYFAEALIAEAEVD---KDVV 222 (525)
Q Consensus 185 ~~~~~~-----------------~~-~-----------~~----------~~~~~~~~~~a~~~~l~~~~~~d---~~~v 222 (525)
+|.... |. + ++ .+.+..+++++|++.|.++++++ +++|
T Consensus 437 ~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV 516 (886)
T 2qtc_A 437 PYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLV 516 (886)
T ss_dssp CCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEE
T ss_pred cccCCccchHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEE
Confidence 454322 10 0 01 01134689999999999999988 9999
Q ss_pred EEecCCCC---C------cc-----hHHHH-----------HhCCCCeeeccchHHHH-H---HHHHHHhcCC--CeEEE
Q 009809 223 AIHAAMGG---G------TG-----LNLFL-----------RRFPTRCFDVGIAEQHA-V---TFAAGLACEG--LKPFC 271 (525)
Q Consensus 223 ~~~~D~~~---s------~~-----l~~~~-----------~~~p~r~~~~gIaE~~~-~---~~a~G~A~~G--~~pi~ 271 (525)
++++|+.. + ++ ...|. +.||+||+|+||+|+++ + ++|+|+|++| ++||+
T Consensus 517 ~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~ 596 (886)
T 2qtc_A 517 PIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFY 596 (886)
T ss_dssp EEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEE
T ss_pred EEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEE
Confidence 99999543 2 11 13443 67899999999999996 5 6999999999 89999
Q ss_pred eechhh-HHHHHHHHHHHhhcCCCCeEEEEcCCCC-CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc
Q 009809 272 AIYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 349 (525)
Q Consensus 272 ~t~~~F-~~~a~dqi~~~~~~~~~pvvi~~~~~G~-~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~ 349 (525)
.+|++| ++|++||+.+++++++.++++.+..++. .|++|+|||+.+|+++++.+||++|++|+|++|++.++++|++.
T Consensus 597 ~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~ 676 (886)
T 2qtc_A 597 IYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLER 676 (886)
T ss_dssp EEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHH
T ss_pred EEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHh
Confidence 999999 7999999999999999999998765443 58899999999999999999999999999999999999999876
Q ss_pred CCCc----EEEEecCCC--CCCcccCCCCCCCccccCceEEEeeC----CcEEEEEechhHHHHHHHHHHHHhC-CCcEE
Q 009809 350 DDRP----SCFRYPRGN--GIGVELPPGNKGIPLEVGKGRILIEG----ERVALLGYGTAVQSCLAASALLESN-GLRLT 418 (525)
Q Consensus 350 ~~~P----v~i~~~~~~--~~~~~~p~~~~~~~~~~g~~~~l~~g----~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~ 418 (525)
.++| +++++++.+ .....+|+. ....+ +++++++++| +|++||++|+++.+|++|++.|+++ ||+++
T Consensus 677 ~~gP~~e~v~i~~~r~~~~~~~p~~~~~-~~~~~-~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~ 754 (886)
T 2qtc_A 677 MYGEKQENVYYYITTLNENYHMPAMPEG-AEEGI-RKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSD 754 (886)
T ss_dssp HHSTTCCCCEEEEECCSCCBCCCCCCTT-CHHHH-HHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEE
T ss_pred cCCCCCceEEEEEeCCccccCCCCCCcc-hhhhc-cCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceE
Confidence 5679 999999864 211112321 01223 7889999987 7999999999999999999999998 99999
Q ss_pred EEeccccccCcHHH-------------------HHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCC-cceEEee
Q 009809 419 VADARFCKPLDHAL-------------------IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGT-VKWRPLV 478 (525)
Q Consensus 419 vi~~~~l~P~d~~~-------------------i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~-~~~~~ig 478 (525)
||+++|++|||.++ +.+.+.. ..+|++|++.. |++..+.+++ + .++.++|
T Consensus 755 Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~~-g~~~~~~~~~--------~~~~~~~lG 824 (886)
T 2qtc_A 755 VYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYMK-LFAEQVRTYV--------PADDYRVLG 824 (886)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSCT-HHHHTTGGGC--------CSSCEEEEC
T ss_pred EEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEeccc-chHHHHHHHc--------CCCCeEEEE
Confidence 99999999999875 5566655 67888888765 5554443222 3 5788899
Q ss_pred cCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 479 LPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 479 ~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
+ |.|+.+|+.++|+++||++++.|++++++++..
T Consensus 825 ~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~~ 858 (886)
T 2qtc_A 825 T-DGFGRSDSRENLRHHFEVDASYVVVAALGELAK 858 (886)
T ss_dssp C-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred e-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8 899999999999999999999999999998854
No 15
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=8e-60 Score=486.09 Aligned_cols=339 Identities=24% Similarity=0.292 Sum_probs=242.5
Q ss_pred EEccCCCCchh-hhhccccccCCCCCCCCCCcccCC-C--CCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----c
Q 009809 162 VVTEKGRGYPY-AEKAADKYHGVAKFDPATGKQFKS-S--ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----G 233 (525)
Q Consensus 162 v~t~kg~g~~~-~~~~~~~~h~~~~~~~~~~~~~~~-~--~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~----~ 233 (525)
-.|.||+||++ ++++...||+..|| +++|+.... . ....+|+++++++|.+++++||+++++++|++.+. .
T Consensus 9 ~~t~kg~g~~~~a~~~~~~~h~~~pf-~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~ 87 (369)
T 1ik6_A 9 GLVPRGSGMKETAAAKFERNHMDSPD-LGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLV 87 (369)
T ss_dssp ------------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CT
T ss_pred CCCCCCCCCCcchhhchhhhcccCCc-CCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchh
Confidence 37999999999 99999999999999 999874322 1 14568999999999999999999999999997322 2
Q ss_pred hHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEe-echhhHHHHHHHHHHHhhcC--------CCCeEEEEcCC
Q 009809 234 LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRA 303 (525)
Q Consensus 234 l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~-t~~~F~~~a~dqi~~~~~~~--------~~pvvi~~~~~ 303 (525)
+..|.++| |+||+|+||+|++++++|+|+|++|+||+++ +|++|++|++|||++++|++ ++||+++.+++
T Consensus 88 ~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~g 167 (369)
T 1ik6_A 88 TEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVG 167 (369)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEEC
T ss_pred HHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 57899999 9999999999999999999999999999998 69999999999999998866 99999999887
Q ss_pred CCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCC--CcccCCCCCCCccccCc
Q 009809 304 GLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGK 381 (525)
Q Consensus 304 G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~--~~~~p~~~~~~~~~~g~ 381 (525)
|..+ +|++||+.+ .++++.+|||+|++|+|++|++.++++|++ .++|++||+++.... ...+|. ..+.+++|+
T Consensus 168 g~~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~--~~~~~~~G~ 242 (369)
T 1ik6_A 168 SGTR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE--GDYVVEIGK 242 (369)
T ss_dssp C------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC--SSCCCCTTC
T ss_pred CCCC-CCccccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC--CcccccCCc
Confidence 7555 788888876 589999999999999999999999999987 789999998876421 122332 234567899
Q ss_pred eEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHH
Q 009809 382 GRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQ 460 (525)
Q Consensus 382 ~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~ 460 (525)
++++++|.|++|||+|+++..+++|++.|+ | +++||++++++|||.+.|.+++++++++|++|++. .|||+++|++
T Consensus 243 ~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~ 319 (369)
T 1ik6_A 243 ARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRA 319 (369)
T ss_dssp CEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHH
T ss_pred eEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHH
Confidence 999999999999999999999999999996 8 99999999999999999999998888899999997 7999999999
Q ss_pred HHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhh
Q 009809 461 FLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 461 ~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 512 (525)
++.++++..+..++.++|++|.|+++|+ |++++|+++++|+++|+++++
T Consensus 320 ~l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 320 LVAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred HHHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHhh
Confidence 9998875333578999999999999887 999999999999999998874
No 16
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=2.1e-55 Score=447.38 Aligned_cols=304 Identities=21% Similarity=0.270 Sum_probs=270.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----chHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEe-ec
Q 009809 201 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IY 274 (525)
Q Consensus 201 ~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~----~l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~-t~ 274 (525)
++|+++|+++|.+++++||+++++++|++.+. .+..|+++| |+||+|+||+|++++++|+|+|++|+||+++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999997532 347899999 9999999999999999999999999999998 69
Q ss_pred hhhHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 009809 275 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 346 (525)
Q Consensus 275 ~~F~~~a~dqi~~~~~~--------~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a 346 (525)
++|++|++||+++++++ +++|++++.++ |..+.+|++|++ +|.++++.+|||+|++|+|++|++.++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999998887 89999999874 545667788887 666999999999999999999999999999
Q ss_pred HhcCCCcEEEEecCCCCC--CcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccc
Q 009809 347 AAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 424 (525)
Q Consensus 347 ~~~~~~Pv~i~~~~~~~~--~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 424 (525)
++ .++|+++++++.... ...+|. ..+.+++||++++++|+|++||+||++++.+++|++.|+++|++++||++++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE--GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC--ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 86 689999999876532 122332 2345778999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHH
Q 009809 425 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 503 (525)
Q Consensus 425 l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I 503 (525)
++|||.+.|.+++++++++|++|++. .|||+++|++.+.++++.....++.++|++|.|+++|+ |++++|+++++|
T Consensus 238 l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~I 314 (324)
T 1w85_B 238 VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDV 314 (324)
T ss_dssp EESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHH
T ss_pred ecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHHH
Confidence 99999999999999888999999997 79999999999988764333468899999999999887 999999999999
Q ss_pred HHHHHHHhh
Q 009809 504 AATVFNILG 512 (525)
Q Consensus 504 ~~~i~~~l~ 512 (525)
+++|++++.
T Consensus 315 ~~~i~~~l~ 323 (324)
T 1w85_B 315 IETAKKVMN 323 (324)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998874
No 17
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=4.7e-55 Score=446.63 Aligned_cols=307 Identities=20% Similarity=0.266 Sum_probs=273.6
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecCCCC--C-c-chHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEe-
Q 009809 199 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGG--G-T-GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA- 272 (525)
Q Consensus 199 ~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~--s-~-~l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~- 272 (525)
.+.+|+++++++|.+++++||+++++++|++. + + .+..|.++| |+||+|+||+|++++++|+|+|++|+||+++
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~ 92 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF 92 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999999999999983 2 2 267899999 9999999999999999999999999999998
Q ss_pred echhhHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHH
Q 009809 273 IYSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 344 (525)
Q Consensus 273 t~~~F~~~a~dqi~~~~~~--------~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~ 344 (525)
+|++|++|++||+++++++ +++||++++++ |..|.+|+|||+..| ++++.+|||+|++|+|++|++.+++
T Consensus 93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHH
Confidence 6999999999999999983 99999999997 667889999977667 8999999999999999999999999
Q ss_pred HHHhcCCCcEEEEecCCCCC-Cccc----CCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q 009809 345 TAAAIDDRPSCFRYPRGNGI-GVEL----PPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTV 419 (525)
Q Consensus 345 ~a~~~~~~Pv~i~~~~~~~~-~~~~----p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~v 419 (525)
+|++ .++|++||++|.... ...+ ++ ..+.+++|+++++++|+|++||++|+++..+++|++.|+++|++++|
T Consensus 171 ~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~--~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~v 247 (341)
T 2ozl_B 171 SAIR-DNNPVVVLENELMYGVPFEFPPEAQS--KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 247 (341)
T ss_dssp HHHH-SSSCEEEEECHHHHTCEEECCHHHHS--TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHh-cCCCEEEEEChhhhcCCCCcCCccCC--ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEE
Confidence 9987 479999999975311 1112 22 23566789999999999999999999999999999999999999999
Q ss_pred EeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHH-cCCCCCCcceEEeecCCccCCCCChHHHHHHcC
Q 009809 420 ADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQ-DGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG 497 (525)
Q Consensus 420 i~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~-~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~g 497 (525)
|++++++|||.+.+.+++++++++|++|++. .|||+++|++++.+ +++..++.++.++|++|.|+++|+ ++++++|
T Consensus 248 v~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g 325 (341)
T 2ozl_B 248 INMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSI 325 (341)
T ss_dssp EECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTS
T ss_pred EeeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhC
Confidence 9999999999999999998888999999998 69999999999998 765333578999999999999986 6889999
Q ss_pred CCHHHHHHHHHHHhh
Q 009809 498 LTPSHIAATVFNILG 512 (525)
Q Consensus 498 l~~~~I~~~i~~~l~ 512 (525)
++++.|+++|+++++
T Consensus 326 ~~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 326 PQVKDIIFAIKKTLN 340 (341)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhc
Confidence 999999999998874
No 18
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=2e-55 Score=450.12 Aligned_cols=318 Identities=17% Similarity=0.224 Sum_probs=270.7
Q ss_pred CCCCCCcccCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecCCCCC---cchHHHHHhC-CCCeeeccchHHHHHHHHHH
Q 009809 186 FDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGG---TGLNLFLRRF-PTRCFDVGIAEQHAVTFAAG 261 (525)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s---~~l~~~~~~~-p~r~~~~gIaE~~~~~~a~G 261 (525)
|+++++.+........+|+++++++|.+++++||+++++++|++.+ ..+..|+++| |+||+|+||+|++++++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 5566655443334567899999999999999999999999999731 1357899999 99999999999999999999
Q ss_pred HhcCCCeEEEe-echhhHHHHHHHHHHHhhcCC--------C-CeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEE
Q 009809 262 LACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQK--------L-PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVM 331 (525)
Q Consensus 262 ~A~~G~~pi~~-t~~~F~~~a~dqi~~~~~~~~--------~-pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~ 331 (525)
+|++|+||+++ +|++|++|++||+++++|+++ + ||+++.+++| +.+|+|||+.+|++++|.+|||+|+
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEE
Confidence 99999999997 699999999999998888544 3 9999988766 3589999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCC--CcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHH
Q 009809 332 APSDEAELFHMVATAAAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASAL 409 (525)
Q Consensus 332 ~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~--~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~ 409 (525)
+|+|++|++.++++|++ .++|+++++++.... ...+|. ..+.+++|+++++++|+|++||++|++++.+++|+++
T Consensus 164 ~Psd~~e~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~ 240 (342)
T 2bfd_B 164 IPRSPFQAKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPI--EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASM 240 (342)
T ss_dssp CCSSHHHHHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEES--SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCC--cccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHH
Confidence 99999999999999987 489999988853211 111332 2345678999999999999999999999999999999
Q ss_pred HHhC-CCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCC
Q 009809 410 LESN-GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 487 (525)
Q Consensus 410 L~~~-Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g 487 (525)
|+++ |++++||++++++|||.+.|.+++++++++|++|++. .|||+++|++++.++++.....++.++|++|.|++++
T Consensus 241 L~~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 320 (342)
T 2bfd_B 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI 320 (342)
T ss_dssp HHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred HHhhcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH
Confidence 9999 9999999999999999999999998888999999996 8999999999998876432346889999999998865
Q ss_pred ChHHHHHHcCCCHHHHHHHHHHHhh
Q 009809 488 SPADQLAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 488 ~~~~l~~~~gl~~~~I~~~i~~~l~ 512 (525)
|++++|++++.|+++|++++.
T Consensus 321 ----l~~~~gl~~~~I~~~i~~~l~ 341 (342)
T 2bfd_B 321 ----FEPFYIPDKWKCYDALRKMIN 341 (342)
T ss_dssp ----THHHHSCCHHHHHHHHHHHHT
T ss_pred ----HHHHHCcCHHHHHHHHHHHhc
Confidence 999999999999999998874
No 19
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1.2e-54 Score=441.91 Aligned_cols=304 Identities=23% Similarity=0.251 Sum_probs=269.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----chHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEe-e
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 273 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~----~l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~-t 273 (525)
..+|+++++++|.+++++||+++++++|++.+. .+..|+++| |+||+|+||+|++++++|+|+|++|+||+++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 458999999999999999999999999998533 347899999 9999999999999999999999999999998 6
Q ss_pred chhhHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHH
Q 009809 274 YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 345 (525)
Q Consensus 274 ~~~F~~~a~dqi~~~~~~--------~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~ 345 (525)
|++|++|++||+++++++ +++|++++.++ |..+.+|++||+ +|.++++.+|||+|++|+|++|++.++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999886 79999999874 545666778887 78899999999999999999999999999
Q ss_pred HHhcCCCcEEEEecCCCCC--CcccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEecc
Q 009809 346 AAAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 346 a~~~~~~Pv~i~~~~~~~~--~~~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
|++ .++|+++++++.... ...+|+ ..+.+++|+++++++|+|++||++|++++.+++|++.|+++|++++||+++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 237 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE--EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR 237 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC--CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 986 689999998875421 122332 234577899999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHH
Q 009809 424 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 502 (525)
Q Consensus 424 ~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~ 502 (525)
+++|||.+.|.+++++++++|++|++. .|||+++|++.+.++++...+.++.++|++|.|+++| |++++|+++++
T Consensus 238 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~ 313 (324)
T 1umd_B 238 TLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTR 313 (324)
T ss_dssp EEETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHH
T ss_pred eecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHH
Confidence 999999999999998888999999997 7999999999998876433356889999999999988 99999999999
Q ss_pred HHHHHHHHhh
Q 009809 503 IAATVFNILG 512 (525)
Q Consensus 503 I~~~i~~~l~ 512 (525)
|++++++++.
T Consensus 314 I~~~i~~~l~ 323 (324)
T 1umd_B 314 ILNAAKRALD 323 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998874
No 20
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=1.7e-54 Score=476.97 Aligned_cols=449 Identities=14% Similarity=0.148 Sum_probs=345.1
Q ss_pred cccccccCCCCeEEEEEcccccccch---hHHHHHhccccC-CCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQ---AYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQ 77 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~---~~Ealn~A~~~~-l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~ 77 (525)
|+++++++++.+|+|++|||+.++|. .||+.++++..+ .|++.|+++|+.+ |+|.+.. ..+
T Consensus 184 AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~------i~g~t~l-~~~-------- 248 (845)
T 3ahc_A 184 AYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYK------IANPTIL-ARI-------- 248 (845)
T ss_dssp HHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBS------SSSBCHH-HHS--------
T ss_pred HhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCc------CCCCccc-ccc--------
Confidence 45567889999999999999999999 999999999886 6788999889866 4555321 000
Q ss_pred cChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCC-C--CHHHHHHHHHH------
Q 009809 78 SNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-H--NVDDLVAILEE------ 148 (525)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG-~--d~~~l~~al~~------ 148 (525)
..+++.+ +|++|||+++..+|| | |++++.+++..
T Consensus 249 ---------------------~~e~l~~----------------rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~ 291 (845)
T 3ahc_A 249 ---------------------SDEELHD----------------FFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIF 291 (845)
T ss_dssp ---------------------CHHHHHH----------------HHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------CcHHHHH----------------HHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 1233333 389999999856899 9 99998877542
Q ss_pred ---------hhhcCCCCC--EEEEEEccCCC-------CchhhhhccccccCCCC-------------------------
Q 009809 149 ---------VKNTKTTGP--VLIHVVTEKGR-------GYPYAEKAADKYHGVAK------------------------- 185 (525)
Q Consensus 149 ---------a~~~~~~~P--~~i~v~t~kg~-------g~~~~~~~~~~~h~~~~------------------------- 185 (525)
|++....+| ++|.++|+||+ |.+ .+ +...+|+.+.
T Consensus 292 ~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~e-g~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~el 369 (845)
T 3ahc_A 292 DEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TE-GSWRAHQVPLASARDTEEHFEVLKGWMESYKPEEL 369 (845)
T ss_dssp HHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CT-TSGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cC-CCccccCCCCCCcccCHHHHHHHhhhccCCCchhc
Confidence 222113689 99999999999 984 43 5568888751
Q ss_pred CCCC------------CCcc------------cC-----CC--------------C-CcccHHHHHHHHHHHHHhcCCC-
Q 009809 186 FDPA------------TGKQ------------FK-----SS--------------A-RTQSYTTYFAEALIAEAEVDKD- 220 (525)
Q Consensus 186 ~~~~------------~~~~------------~~-----~~--------------~-~~~~~~~a~~~~l~~~~~~d~~- 220 (525)
|+.. .|.. ++ +. . ....-+++++++|.++++.+|+
T Consensus 370 F~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~~p~~ 449 (845)
T 3ahc_A 370 FNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDS 449 (845)
T ss_dssp BCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHHHHHHHHHHHSTTT
T ss_pred cCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHHHHHHHHHHhCCCc
Confidence 2110 0000 00 00 0 0123467888999999999999
Q ss_pred EEEEecCCCCCcchHHHHHh---------C--C--------CCeeeccchHHHHHHHHHHHhcCCCeEEEeechhhH---
Q 009809 221 VVAIHAAMGGGTGLNLFLRR---------F--P--------TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM--- 278 (525)
Q Consensus 221 ~v~~~~D~~~s~~l~~~~~~---------~--p--------~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~--- 278 (525)
++++++|+.+|+++..|.+. + | +||++ ||+|++|+++++|+|++|.+||+.+|++|+
T Consensus 450 ~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl~~~ 528 (845)
T 3ahc_A 450 FRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVI 528 (845)
T ss_dssp EEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGG
T ss_pred EEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhcCCCCceecchhhhchh
Confidence 99999999999988887777 6 7 89999 999999999999999999999999998887
Q ss_pred HHHHHH----HHHHhhcC----CC-CeEEEEcCCCC-CCCCCCCCcch--hhhhhhh---cCCCcEEEccCCHHHHHHHH
Q 009809 279 QRAYDQ----VVHDVDLQ----KL-PVRFAMDRAGL-VGADGPTHCGS--FDVTFMA---CLPNMVVMAPSDEAELFHMV 343 (525)
Q Consensus 279 ~~a~dq----i~~~~~~~----~~-pvvi~~~~~G~-~g~~G~tH~~~--~d~~~~~---~ipg~~v~~P~~~~e~~~~~ 343 (525)
.++++| +++..+.+ .. +|++++++.|+ .|++|+|||++ +|+..++ .+||+.||.|+|++|+..++
T Consensus 529 ~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~~a~ 608 (845)
T 3ahc_A 529 DSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAIS 608 (845)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHHHHH
Confidence 899999 87772332 34 69999999998 79999999994 5555554 67999999999999999999
Q ss_pred HHHHhcCCCcEEEEecCCCCCCcccCCCCCCC---ccccCceEEE---ee--C--CcEEEEEechhH-HHHHHHHHHHHh
Q 009809 344 ATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI---PLEVGKGRIL---IE--G--ERVALLGYGTAV-QSCLAASALLES 412 (525)
Q Consensus 344 ~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~~---~~~~g~~~~l---~~--g--~dv~iva~G~~~-~~a~~Aa~~L~~ 412 (525)
+.|++..+.|.+++.+|++.+... . ... .+..|++.+. ++ + +||+||++|+.+ .+|++|++.|++
T Consensus 609 ~~al~~~~~~~v~v~sRq~~p~~~--~--~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~ 684 (845)
T 3ahc_A 609 EKCFKSTNKINAIFAGKQPAPTWV--T--LDEARAELEAGAAEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNK 684 (845)
T ss_dssp HHHHHCBSCEEEEECCCSCEEECS--C--HHHHHHHHHHSEEECTTTCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEecCCCCCccC--C--chhhhhhhcCCeEEEEeecccccCCCCCEEEEEeccHHHHHHHHHHHHHHh
Confidence 999875444544555998744321 1 111 2455665555 35 4 899999999765 669999999999
Q ss_pred CCCcEEEEecccc---ccCcHHHHHHHhccCCeEEEEcCCC---CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCC
Q 009809 413 NGLRLTVADARFC---KPLDHALIRSLAKSHEVLITVEEGS---IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDH 486 (525)
Q Consensus 413 ~Gi~v~vi~~~~l---~P~d~~~i~~~~~~~~~vvvvE~~~---~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~ 486 (525)
+||+++||++++| +|.+.+.+....+.++.|+++|+|. .||+++.|++.+.++.. +.++.++|++| |+.+
T Consensus 685 ~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~ell~~r~~---~~~l~v~G~~d-~G~t 760 (845)
T 3ahc_A 685 MGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDRPN---HDNFHVVGYKE-QGST 760 (845)
T ss_dssp TTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHHTTTSTT---GGGEEEECCCS-CCCS
T ss_pred CCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHHHHHHHhCCC---CceEEEEeccC-CCCC
Confidence 9999999999999 5554433222233445678888886 49999999999887621 46899999998 9999
Q ss_pred CChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 487 GSPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 487 g~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
|++.+|++++|||.+.|++++++++..
T Consensus 761 gtp~eLl~~~gld~~~Iv~~a~~~l~~ 787 (845)
T 3ahc_A 761 TTPFDMVRVNDMDRYALQAAALKLIDA 787 (845)
T ss_dssp CCHHHHHHTTTCSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHcch
Confidence 999999999999999999999998873
No 21
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2.6e-54 Score=486.05 Aligned_cols=444 Identities=14% Similarity=0.114 Sum_probs=327.8
Q ss_pred CcccccccC-----CCCeEEEEEccccc-ccchhHHHHHhccccCCC---EEEEEECCCCCcCCCCCCCCCCCcchhhhH
Q 009809 1 MAVGRDLKG-----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSS 71 (525)
Q Consensus 1 ~A~a~~l~~-----~~~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~---l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~ 71 (525)
+|+|.++++ .++++||++|||++ ++|++|||||+|+.|++| +++||+||++.+++... ... ..
T Consensus 333 ~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~-----~~~-~~-- 404 (933)
T 2jgd_A 333 SVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNP-----LDA-RS-- 404 (933)
T ss_dssp HHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------------
T ss_pred HHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCH-----Hhc-cc--
Confidence 356667663 67899999999998 999999999999999999 99999999865211000 000 00
Q ss_pred HHhhhhcChhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhh
Q 009809 72 ALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN 151 (525)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~ 151 (525)
.+....+++++||+++ .|||+|+.+++++++.|++
T Consensus 405 --------------------------------------------~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e 439 (933)
T 2jgd_A 405 --------------------------------------------TPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALD 439 (933)
T ss_dssp ----------------------------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHH
T ss_pred --------------------------------------------chhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHH
Confidence 0111235788999988 7899999999998887764
Q ss_pred c--CCCCCEEEEEEccCCCCchhhhhc----------------c------------------------------------
Q 009809 152 T--KTTGPVLIHVVTEKGRGYPYAEKA----------------A------------------------------------ 177 (525)
Q Consensus 152 ~--~~~~P~~i~v~t~kg~g~~~~~~~----------------~------------------------------------ 177 (525)
. ...+|++|++.|.+++||...+.. |
T Consensus 440 ~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~ 519 (933)
T 2jgd_A 440 FRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCV 519 (933)
T ss_dssp HHHHHCCCEEEEEECCCCC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 157899999999999998543321 0
Q ss_pred -----------ccccCCCCC----CCCCCccc----------C--C---------------------CCCcccHHHHHHH
Q 009809 178 -----------DKYHGVAKF----DPATGKQF----------K--S---------------------SARTQSYTTYFAE 209 (525)
Q Consensus 178 -----------~~~h~~~~~----~~~~~~~~----------~--~---------------------~~~~~~~~~a~~~ 209 (525)
..||+..++ ++++|.+. . | .....+|..+++.
T Consensus 520 A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~ 599 (933)
T 2jgd_A 520 VAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENL 599 (933)
T ss_dssp CTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHH
T ss_pred HHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 011221111 11222110 0 0 0013578889999
Q ss_pred HHHHHHhcCCCEEEEecCCCCC------------------cchHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCe--
Q 009809 210 ALIAEAEVDKDVVAIHAAMGGG------------------TGLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLK-- 268 (525)
Q Consensus 210 ~l~~~~~~d~~~v~~~~D~~~s------------------~~l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~-- 268 (525)
+|.+++++|++|+++++|++.+ ..+..|.++| |+||+|+||+|++++|+|+|+|+.|.+
T Consensus 600 al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~l 679 (933)
T 2jgd_A 600 AYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTL 679 (933)
T ss_dssp HHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999864 3467888999 999999999999999999999999988
Q ss_pred EEEe-echhhHH---HHHHHHHHHh-h--cCCCCeEEEEcCCCCCCCCCCCCcc--hhhhhhhhcCCCcEEEccCCHHHH
Q 009809 269 PFCA-IYSSFMQ---RAYDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAEL 339 (525)
Q Consensus 269 pi~~-t~~~F~~---~a~dqi~~~~-~--~~~~pvvi~~~~~G~~g~~G~tH~~--~~d~~~~~~ipg~~v~~P~~~~e~ 339 (525)
|+++ +|++|++ +++||+++++ + .+++||+++.++ |+.| .|++||+ .+++..++.+|||+|+.|+|+.|+
T Consensus 680 pv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~ 757 (933)
T 2jgd_A 680 TIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQV 757 (933)
T ss_dssp EEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHH
T ss_pred CEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHH
Confidence 9987 5999986 9999998888 6 368999999987 4444 4899998 666666667899999999999999
Q ss_pred HHHHHHHHhc-CCCcEEEEecCCCCC-CcccCC----CCCCCccccCceEEEeeCCcE--EEEEechhHHHHHHHHHHHH
Q 009809 340 FHMVATAAAI-DDRPSCFRYPRGNGI-GVELPP----GNKGIPLEVGKGRILIEGERV--ALLGYGTAVQSCLAASALLE 411 (525)
Q Consensus 340 ~~~~~~a~~~-~~~Pv~i~~~~~~~~-~~~~p~----~~~~~~~~~g~~~~l~~g~dv--~iva~G~~~~~a~~Aa~~L~ 411 (525)
+.++++++.. .++|++|+++|.... ...++. ....+.+.+|++.+++ |.|+ +|+++|.++..+++|++.|+
T Consensus 758 ~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~ 836 (933)
T 2jgd_A 758 YHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNN 836 (933)
T ss_dssp HHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcc
Confidence 9999998533 479999999986521 111110 0013455678877666 8888 67777777777777778876
Q ss_pred hCCCcEEEEeccccccCcHHHHHHHhccCC---eEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCC-C
Q 009809 412 SNGLRLTVADARFCKPLDHALIRSLAKSHE---VLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-H 486 (525)
Q Consensus 412 ~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~---~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~-~ 486 (525)
++ ++.||++++|+|||.+.|.+++++++ .||++||+. .||+++.|++.+.+.... ..++.++|.+|.|.+ +
T Consensus 837 ~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~vg~~d~~~pa~ 912 (933)
T 2jgd_A 837 QH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYAGRPASASPAV 912 (933)
T ss_dssp CC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEEEECCCSSSSC
T ss_pred cC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEEecCCcCCCCc
Confidence 54 89999999999999999999998887 899999987 799999999999886531 368999999999998 4
Q ss_pred CChHHHHHHcCCCHHHHHHHHH
Q 009809 487 GSPADQLAQAGLTPSHIAATVF 508 (525)
Q Consensus 487 g~~~~l~~~~gl~~~~I~~~i~ 508 (525)
|.... +-...+.|++++.
T Consensus 913 g~~~~----h~~~~~~i~~~a~ 930 (933)
T 2jgd_A 913 GHMSV----HQKQQQDLVNDAL 930 (933)
T ss_dssp SCHHH----HHHHHHHHHHHHH
T ss_pred CCHHH----HHHHHHHHHHHHh
Confidence 54433 2335566666653
No 22
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=4.5e-53 Score=432.89 Aligned_cols=300 Identities=22% Similarity=0.271 Sum_probs=265.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----chHHHHHhC-CCCeeeccchHHHHHHHHHHHhcCCCeEEEe-e
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 273 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~----~l~~~~~~~-p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~-t 273 (525)
..+|+++++++|.+++++||+++++++|++.+. .+..|+++| |+||+|+||+|++++++|+|+|++|+||+++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 458999999999999999999999999997532 367899999 9999999999999999999999999999997 6
Q ss_pred chhhHHHHHHHHHHHhhcC--------CCCeEEEEcCCCCCCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHH
Q 009809 274 YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 345 (525)
Q Consensus 274 ~~~F~~~a~dqi~~~~~~~--------~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~ 345 (525)
|++|+++++||+++++|.+ ++||+++.+++| +.+|++||+.+|+++++.+|||+|++|+|++|+++++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 9999999999999888854 499999998776 678999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEecC----CCCC---Cc-----------ccCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHH
Q 009809 346 AAAIDDRPSCFRYPR----GNGI---GV-----------ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAAS 407 (525)
Q Consensus 346 a~~~~~~Pv~i~~~~----~~~~---~~-----------~~p~~~~~~~~~~g~~~~l~~g~dv~iva~G~~~~~a~~Aa 407 (525)
|++. ++|++|++++ +... .. .+|. ..+.+++|+++++++|+|++|||+|++++.+++|+
T Consensus 162 A~~~-~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa 238 (338)
T 1qs0_B 162 SIEC-DDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD--GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA 238 (338)
T ss_dssp HHHS-SSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES--SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHH
T ss_pred HHhc-CCcEEEEEchHhhcCcccccccCccchhhcccccccCC--CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHH
Confidence 9874 8999998773 3211 00 1222 12446789999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCC
Q 009809 408 ALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDH 486 (525)
Q Consensus 408 ~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~ 486 (525)
+. +|++++||++++++|||.+.|.+++++++++|++|++. .|||+++|++.+.++++..+..++.++|.+|.|.++
T Consensus 239 ~~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~ 315 (338)
T 1qs0_B 239 EE---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPH 315 (338)
T ss_dssp HH---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCS
T ss_pred HH---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcH
Confidence 87 59999999999999999999999999888999999997 799999999999888753335689999999999886
Q ss_pred CChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 487 GSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 487 g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
+ |++++|+++++|+++|++++
T Consensus 316 ~----l~~~~g~~~~~I~~~i~~~l 336 (338)
T 1qs0_B 316 A----QEWAYFPGPSRVGAALKKVM 336 (338)
T ss_dssp T----THHHHSCCHHHHHHHHHHSS
T ss_pred H----HHHHHCCCHHHHHHHHHHHh
Confidence 6 89999999999999998875
No 23
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1e-51 Score=462.71 Aligned_cols=422 Identities=17% Similarity=0.112 Sum_probs=310.9
Q ss_pred CCCeEEEEEccccc-ccchhHHHHHhccccCCC---EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHH
Q 009809 10 RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLREL 85 (525)
Q Consensus 10 ~~~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~---l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~ 85 (525)
.+.++||++|||++ +||.+|||||+|+.|++| +++||+||++..+ + ..
T Consensus 276 ~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~s-t--------~~------------------- 327 (868)
T 2yic_A 276 FSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT-T--------AP------------------- 327 (868)
T ss_dssp CCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT-B--------CH-------------------
T ss_pred CCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccc-c--------Cc-------------------
Confidence 66799999999996 899999999999999998 9999999975321 1 00
Q ss_pred HHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEEEEEE
Q 009809 86 REVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVV 163 (525)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~i~v~ 163 (525)
.+. + ..+....+++++||+++ .|||+|+.++++|++.|.++ ..++|++|++.
T Consensus 328 ---------------~~~--------~--s~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~ 381 (868)
T 2yic_A 328 ---------------TDS--------R--SSEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVVIDML 381 (868)
T ss_dssp ---------------HHH--------C--SSSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred ---------------ccc--------c--cccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 000 0 00111345899999999 79999999999988877532 15789999999
Q ss_pred ccCCCCchhhhhcc-------ccccCCC-C-------------C--------------------------CC--------
Q 009809 164 TEKGRGYPYAEKAA-------DKYHGVA-K-------------F--------------------------DP-------- 188 (525)
Q Consensus 164 t~kg~g~~~~~~~~-------~~~h~~~-~-------------~--------------------------~~-------- 188 (525)
|.+++||...+... ..++... + + .|
T Consensus 382 tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~ 461 (868)
T 2yic_A 382 CYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSES 461 (868)
T ss_dssp CCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 99999997654310 0122111 0 0 00
Q ss_pred -----------CCCc----------cc--CCCC----Ccc----cHHH----------HHHHH--HHHHHhcCCCEEEEe
Q 009809 189 -----------ATGK----------QF--KSSA----RTQ----SYTT----------YFAEA--LIAEAEVDKDVVAIH 225 (525)
Q Consensus 189 -----------~~~~----------~~--~~~~----~~~----~~~~----------a~~~~--l~~~~~~d~~~v~~~ 225 (525)
+++. .. .|+. +.. .-+. +++++ +..+++++++|++++
T Consensus 462 ~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V~~~G 541 (868)
T 2yic_A 462 VEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSG 541 (868)
T ss_dssp ----------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0000 00 0000 000 1111 22222 234589999999999
Q ss_pred cCCCCCc------------------chHHH------HH-hCCCCeeeccchHHHHHHHHHHHhcCC--CeEEEee-chhh
Q 009809 226 AAMGGGT------------------GLNLF------LR-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAI-YSSF 277 (525)
Q Consensus 226 ~D~~~s~------------------~l~~~------~~-~~p~r~~~~gIaE~~~~~~a~G~A~~G--~~pi~~t-~~~F 277 (525)
+|++.++ .+.+| .+ .+|+||+|+||+|++++|+|+|+|+.| .+|+++. |++|
T Consensus 542 ~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF 621 (868)
T 2yic_A 542 QDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDF 621 (868)
T ss_dssp TTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGG
T ss_pred CcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHH
Confidence 9998642 25677 44 689999999999999999999999999 5666665 9999
Q ss_pred HHHH---HHHHHHHhh---cCCCCeEEEEcCCCCCCCCCCCCcc--hhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc
Q 009809 278 MQRA---YDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 349 (525)
Q Consensus 278 ~~~a---~dqi~~~~~---~~~~pvvi~~~~~G~~g~~G~tH~~--~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~ 349 (525)
++++ +||+++++. .+++||+++.+++| .| +|++||+ .+++..++.+|||+|+.|+||.|++.+++.++..
T Consensus 622 ~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~ 699 (868)
T 2yic_A 622 VNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKD 699 (868)
T ss_dssp GGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 9777 999988763 46899999999877 56 8999998 7887777999999999999999999999988764
Q ss_pred C-CCcEEEEecCCCCC-CcccCCC----CCCCccccCceEE---EeeCCcE--EEEEechhHHHHHHHHHHHHhCC-CcE
Q 009809 350 D-DRPSCFRYPRGNGI-GVELPPG----NKGIPLEVGKGRI---LIEGERV--ALLGYGTAVQSCLAASALLESNG-LRL 417 (525)
Q Consensus 350 ~-~~Pv~i~~~~~~~~-~~~~p~~----~~~~~~~~g~~~~---l~~g~dv--~iva~G~~~~~a~~Aa~~L~~~G-i~v 417 (525)
. ++|++++++|.... ...++.. ...+...+|++.+ +++|.|+ +||++|.+ ..++.+++ +++| +++
T Consensus 700 ~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i~v 776 (868)
T 2yic_A 700 GIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKENREDV 776 (868)
T ss_dssp SCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHHHH--HHHTCTTE
T ss_pred CCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHHHH--HhCCCCCE
Confidence 2 48999999987421 1111110 0112236788776 6889999 99999999 56665555 5668 999
Q ss_pred EEEeccccccCcHHHHHHHhccCCe---EEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCC-CCChHH
Q 009809 418 TVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HGSPAD 491 (525)
Q Consensus 418 ~vi~~~~l~P~d~~~i~~~~~~~~~---vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~-~g~~~~ 491 (525)
+|||+++|+|||.++|.++++++++ +|++||+. .||+++.|++.+.+.. ...+.++.++|.+|.+.+ +|....
T Consensus 777 ~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~-~~l~~~v~~vg~~d~~~p~~g~~~~ 854 (868)
T 2yic_A 777 AIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEIL-PDHFTGLKRISRRAMSAPSSGSSKV 854 (868)
T ss_dssp EEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHC-HHHHTTCEEEEECCCSSSSCSCHHH
T ss_pred EEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHh-hhcCCCeEEeccCCcCCCCCCCHHH
Confidence 9999999999999999999988876 88888876 7999999999998732 111357899999999998 455444
No 24
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.4e-51 Score=470.27 Aligned_cols=421 Identities=16% Similarity=0.094 Sum_probs=311.8
Q ss_pred CCCeEEEEEccccc-ccchhHHHHHhccccCCC---EEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHH
Q 009809 10 RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLREL 85 (525)
Q Consensus 10 ~~~~v~~~~GDG~~-~eG~~~Ealn~A~~~~l~---l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~ 85 (525)
.+.+++|++|||++ +||.+|||||+|+.|++| +++||+||++..+ + . .. . .++
T Consensus 521 ~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gis-t-----~---~~-~------~~s------- 577 (1113)
T 2xt6_A 521 FSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT-T-----A---PT-D------SRS------- 577 (1113)
T ss_dssp CCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT-B-----C---HH-H------HCS-------
T ss_pred CCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccc-c-----C---cc-c------ccc-------
Confidence 57899999999995 999999999999999998 9999999975421 1 0 00 0 000
Q ss_pred HHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEEEEEE
Q 009809 86 REVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVV 163 (525)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~i~v~ 163 (525)
.+....+++++||+++ .|||+|+.++++|++.|.++ ..++|++|++.
T Consensus 578 ------------------------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~ 626 (1113)
T 2xt6_A 578 ------------------------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVVIDML 626 (1113)
T ss_dssp ------------------------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred ------------------------------ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 0111235889999998 79999999999988877542 15789999999
Q ss_pred ccCCCCchhhhhcccc--------c--cCCC--------------------------------------CCCC-C-----
Q 009809 164 TEKGRGYPYAEKAADK--------Y--HGVA--------------------------------------KFDP-A----- 189 (525)
Q Consensus 164 t~kg~g~~~~~~~~~~--------~--h~~~--------------------------------------~~~~-~----- 189 (525)
|+|++||+..+.. .. + |.-+ ...| .
T Consensus 627 tyR~~GHs~~D~p-~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~ 705 (1113)
T 2xt6_A 627 CYRRRGHNEGDDP-SMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSE 705 (1113)
T ss_dssp CCCCSCSSTTCCG-GGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEccCCcCCCCcc-ccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 9999999865432 11 1 1100 0001 0
Q ss_pred -------------CCcc----------c--CCC-----CC-cccH--H-H-----HHHHHHHH------HHhcCCCEEEE
Q 009809 190 -------------TGKQ----------F--KSS-----AR-TQSY--T-T-----YFAEALIA------EAEVDKDVVAI 224 (525)
Q Consensus 190 -------------~~~~----------~--~~~-----~~-~~~~--~-~-----a~~~~l~~------~~~~d~~~v~~ 224 (525)
++.+ . .|+ ++ ...+ + + ++.+++.+ ++++|++++++
T Consensus 706 ~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~ 785 (1113)
T 2xt6_A 706 SVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLS 785 (1113)
T ss_dssp -----------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 0000 0 000 00 0000 1 1 12233444 48999999999
Q ss_pred ecCCCCCc------------------chHHH------HH-hCCCCeeeccchHHHHHHHHHHHhcCC--CeEEEee-chh
Q 009809 225 HAAMGGGT------------------GLNLF------LR-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAI-YSS 276 (525)
Q Consensus 225 ~~D~~~s~------------------~l~~~------~~-~~p~r~~~~gIaE~~~~~~a~G~A~~G--~~pi~~t-~~~ 276 (525)
++|++.++ .+.+| .+ .+|+|++|+||+|++++|+|+|+|+.| .+|+++. |++
T Consensus 786 GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~d 865 (1113)
T 2xt6_A 786 GQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD 865 (1113)
T ss_dssp ETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGG
T ss_pred cccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHH
Confidence 99998643 35778 55 689999999999999999999999999 5667776 999
Q ss_pred hHHHH---HHHHHHHh---hcCCCCeEEEEcCCCCCCCCCCCCcc--hhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh
Q 009809 277 FMQRA---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA 348 (525)
Q Consensus 277 F~~~a---~dqi~~~~---~~~~~pvvi~~~~~G~~g~~G~tH~~--~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~ 348 (525)
|++++ +||+++++ ..+++||+++.+++| .| +|++||+ .+++..++.+|||+|++|+||.|++.+++.++.
T Consensus 866 F~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~ 943 (1113)
T 2xt6_A 866 FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGK 943 (1113)
T ss_dssp GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHh
Confidence 99776 99998886 356999999999876 55 8999999 666666699999999999999999999999876
Q ss_pred cC-CCcEEEEecCCCCC-CcccCCC----CCCCccccCceEE---EeeCCcE--EEEEechhHHHHHHHHHHHHhCC-Cc
Q 009809 349 ID-DRPSCFRYPRGNGI-GVELPPG----NKGIPLEVGKGRI---LIEGERV--ALLGYGTAVQSCLAASALLESNG-LR 416 (525)
Q Consensus 349 ~~-~~Pv~i~~~~~~~~-~~~~p~~----~~~~~~~~g~~~~---l~~g~dv--~iva~G~~~~~a~~Aa~~L~~~G-i~ 416 (525)
.+ ++|++++++|.... ...++.. ...+..++|++.+ +++|.|+ +||++|.+ +.++++++ +++| ++
T Consensus 944 ~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~g~i~ 1020 (1113)
T 2xt6_A 944 DGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKENRED 1020 (1113)
T ss_dssp SSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHHTCTT
T ss_pred ccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhCCCCC
Confidence 43 58999999987421 1111110 0123336788776 7889999 99999998 66666665 5668 99
Q ss_pred EEEEeccccccCcHHHHHHHhccCCe---EEEEcCCC-CCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCC-CCChHH
Q 009809 417 LTVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HGSPAD 491 (525)
Q Consensus 417 v~vi~~~~l~P~d~~~i~~~~~~~~~---vvvvE~~~-~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~-~g~~~~ 491 (525)
++|||+++|+|||.++|.++++++++ +|++||+. .||++++|++.+.+.. ...+.++.++|.+|.+.+ +|....
T Consensus 1021 v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~-~~l~~~~~~vg~~d~~~p~~g~~~~ 1099 (1113)
T 2xt6_A 1021 VAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEIL-PDHFTGLKRISRRAMSAPSSGSSKV 1099 (1113)
T ss_dssp EEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHS-HHHHTTCEEEEECCCSSSSCSCHHH
T ss_pred EEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHHh-hhcCCCeEEEccCCcCCCCCCCHHH
Confidence 99999999999999999999998876 88998886 7999999999998732 111357899999999998 455444
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.92 E-value=7.3e-26 Score=235.50 Aligned_cols=285 Identities=15% Similarity=0.104 Sum_probs=100.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-HHHHH---hCCCCeeeccchHHHHHHHHHHHhcCCCeEEEeech
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-NLFLR---RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS 275 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l-~~~~~---~~p~r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~ 275 (525)
.++-.+|+.+.+... +.+++..-+-.. ++.+ +.+.+ ++..+|+++. +|++++++|.|+|++|.||++++.+
T Consensus 22 ~~~GneAva~~~~~a---g~~~v~~yPgtP-~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~ 96 (395)
T 1yd7_A 22 FIQGDEAIARAAILA---GCRFYAGYPITP-ASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSG 96 (395)
T ss_dssp EEEHHHHHHHHHHHH---TCCEEEECCBTT-TBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EeEHHHHHHHHHHHc---CCCEEEEEECcc-hHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 356677777776653 455555433333 3333 44444 4556789887 9999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCC--CCCC-CcchhhhhhhhcCC--CcEEEccCCHHHHHHHHHHHHh--
Q 009809 276 SFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGA--DGPT-HCGSFDVTFMACLP--NMVVMAPSDEAELFHMVATAAA-- 348 (525)
Q Consensus 276 ~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~--~G~t-H~~~~d~~~~~~ip--g~~v~~P~~~~e~~~~~~~a~~-- 348 (525)
+++.+++||+.+ ++..++|++++....+..+. ...+ |++.... .+...| ++.+++|++++|+++++.+|++
T Consensus 97 ~G~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA 174 (395)
T 1yd7_A 97 PGFSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLS 174 (395)
T ss_dssp THHHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999865 56789999988765442221 1222 3233332 334444 8999999999999999999985
Q ss_pred -cCCCcEEEEecCCC---CCCcccCCC-----------------CCCCcc--cc--------Cc----------------
Q 009809 349 -IDDRPSCFRYPRGN---GIGVELPPG-----------------NKGIPL--EV--------GK---------------- 381 (525)
Q Consensus 349 -~~~~Pv~i~~~~~~---~~~~~~p~~-----------------~~~~~~--~~--------g~---------------- 381 (525)
+.+.||++++++.. ....++|+. ...+.. +. +.
T Consensus 175 ~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~ 254 (395)
T 1yd7_A 175 EKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGR 254 (395)
T ss_dssp HHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC--------------------------------------------
T ss_pred HHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccC
Confidence 34589999876410 000000000 000100 00 00
Q ss_pred ------------------------------eEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHH
Q 009809 382 ------------------------------GRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA 431 (525)
Q Consensus 382 ------------------------------~~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~ 431 (525)
.++.++|+|++||+||+++..+++|++.|+++|++++||++++++|||.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~ 334 (395)
T 1yd7_A 255 PRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFE 334 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHH
Confidence 01224578999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHh
Q 009809 432 LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 511 (525)
Q Consensus 432 ~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l 511 (525)
.|.++++++++|+|+|++. ||++++|.+.+... .++.++|..+ | .-++++.|.+++++++
T Consensus 335 ~i~~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~~------~~~~~~gk~~-----g--------~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 335 LIERIAERVDKLYVPEMNL-GQLYHLIKEGANGK------AEVKLISKIG-----G--------EVHTPMEIFEFIRREF 394 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCEEEEEeCCc-hHHHHHHHHHhcCC------CCeEEEeccC-----C--------CcCCHHHHHHHHHHhh
Confidence 9999999999999999997 99999998777541 2233344222 1 2358889998887654
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.84 E-value=1.3e-19 Score=210.64 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=180.6
Q ss_pred CeeeccchHHHHHHHHHHHhcCCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 323 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~~~ 323 (525)
+++....+|.++++++.|+|++|.|++++|.++.+..+.|.+...+ ..++|+|++...++..+..-.+|.++.|..+ .
T Consensus 55 ~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~~~a-g~~~P~Vi~va~R~g~~~glsi~~~hsd~~~-a 132 (1231)
T 2c42_A 55 LTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMYKIS-GELLPGVFHVTARAIAAHALSIFGDHQDIYA-A 132 (1231)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHHHH-HTTCCCEEEEEECCCCSSSBCCSCCSHHHHT-T
T ss_pred eEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHHHHh-CCCCCEEEEECCCCccCCCCcCCCchhhHHH-H
Confidence 6899999999999999999999999999999999999999975544 4789988887544422211234455555433 4
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCCC----CCCcccCCC--------------------CCCCc
Q 009809 324 CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN----GIGVELPPG--------------------NKGIP 376 (525)
Q Consensus 324 ~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~~----~~~~~~p~~--------------------~~~~~ 376 (525)
..+|+.|++|+|+||+++++..|++. ...||+++.+... .....+|+. ++..+
T Consensus 133 r~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~p 212 (1231)
T 2c42_A 133 RQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEHP 212 (1231)
T ss_dssp TTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTSC
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCCc
Confidence 46999999999999999999998653 4679999886521 111122210 00000
Q ss_pred cc--------------------------------------cCc----e-EEEeeCCcEEEEEechhHHHHHHHHHHHHhC
Q 009809 377 LE--------------------------------------VGK----G-RILIEGERVALLGYGTAVQSCLAASALLESN 413 (525)
Q Consensus 377 ~~--------------------------------------~g~----~-~~l~~g~dv~iva~G~~~~~a~~Aa~~L~~~ 413 (525)
.. .|+ . +.-.+++|++||+||+++..+++|++.|+++
T Consensus 213 ~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~~ 292 (1231)
T 2c42_A 213 HVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLAAK 292 (1231)
T ss_dssp CEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHHTT
T ss_pred eecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHHhc
Confidence 00 111 1 2335679999999999999999999999999
Q ss_pred CCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCCCCC-----CHHHHHHHHHHHcCCCCCCcceEEeecCCccCCCC
Q 009809 414 GLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIG-----GFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 487 (525)
Q Consensus 414 Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~~~g-----glg~~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g 487 (525)
|++++||++++++|||.+.|.+++ +++++|+|+|++..+ .+..+|...+....- ..++...| .++..|
T Consensus 293 G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~~---~~~~~~~g---r~gl~g 366 (1231)
T 2c42_A 293 GEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERGE---AMPKILAG---RYGLGS 366 (1231)
T ss_dssp TCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHCS---CCCEEEEE---ECCGGG
T ss_pred CCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhccC---CCCeEEEE---EECCCC
Confidence 999999999999999999999998 778999999998532 255566655554310 11332222 122111
Q ss_pred ChHHHHHHcCCCHHHHHHHHHHHhhc
Q 009809 488 SPADQLAQAGLTPSHIAATVFNILGQ 513 (525)
Q Consensus 488 ~~~~l~~~~gl~~~~I~~~i~~~l~~ 513 (525)
..++++.|.+.+.++...
T Consensus 367 --------~~~tp~~i~~~~~~l~~~ 384 (1231)
T 2c42_A 367 --------KEFSPAMVKSVYDNMSGA 384 (1231)
T ss_dssp --------CCCCHHHHHHHHHHHHTT
T ss_pred --------CCCCHHHHHHHHHHhhcC
Confidence 236899999988887654
No 27
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.68 E-value=3.5e-17 Score=169.80 Aligned_cols=125 Identities=22% Similarity=0.193 Sum_probs=97.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+|.++++++++|||++|||++++|.+||+||+|+.|++|++|||+||++.+. + .....
T Consensus 194 A~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~-~--------~~~~~------------ 252 (407)
T 1qs0_A 194 AMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAIS-T--------FQAIA------------ 252 (407)
T ss_dssp HHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETT-E--------EGGGG------------
T ss_pred HHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCccee-e--------ccccc------------
Confidence 56778889999999999999999999999999999999999999999974321 1 00000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPV 158 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~ 158 (525)
. ..++...++++|||+++ .|||+|+.+++++++.|.+. ..++|+
T Consensus 253 --------------------------------~~~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~ 299 (407)
T 1qs0_A 253 --------------------------------GGESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPS 299 (407)
T ss_dssp --------------------------------TTTTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCE
T ss_pred --------------------------------cCCCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 0 01233445899999999 79999999999988877542 257899
Q ss_pred EEEEEccCCCCchhhhhcccccc
Q 009809 159 LIHVVTEKGRGYPYAEKAADKYH 181 (525)
Q Consensus 159 ~i~v~t~kg~g~~~~~~~~~~~h 181 (525)
+|++.|.|++|++.++ ++..|.
T Consensus 300 lIe~~t~R~~Ghs~~D-d~~~Yr 321 (407)
T 1qs0_A 300 LIEWVTYRAGPHSTSD-DPSKYR 321 (407)
T ss_dssp EEEEECCCCSCSSTTC-CGGGTS
T ss_pred EEEEEeeccCCcCCCC-CccccC
Confidence 9999999999998765 345554
No 28
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.67 E-value=4.6e-17 Score=167.08 Aligned_cols=125 Identities=23% Similarity=0.387 Sum_probs=95.6
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+|.++++++++|||++|||++++|.+||+||+|+.|++|++|||+||++.. .+ . ...
T Consensus 155 A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi-~~-----~---~~~------------- 212 (368)
T 1w85_A 155 ALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAI-ST-----P---VEK------------- 212 (368)
T ss_dssp HHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET-TE-----E---GGG-------------
T ss_pred HHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccc-ee-----c---ccc-------------
Confidence 6677888899999999999999999999999999999999999999997431 11 0 000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~ 159 (525)
....++...+++++||+++ .|||+|+.++.++++.|.+. ..++|++
T Consensus 213 -------------------------------~~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~l 260 (368)
T 1w85_A 213 -------------------------------QTVAKTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTL 260 (368)
T ss_dssp -------------------------------TCSCSCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred -------------------------------ccCCCCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 0012334567899999999 78999999999999888652 2578999
Q ss_pred EEEEccCCCCch-hhhhcccccc
Q 009809 160 IHVVTEKGRGYP-YAEKAADKYH 181 (525)
Q Consensus 160 i~v~t~kg~g~~-~~~~~~~~~h 181 (525)
|++.|.+.+||. .++ +|..|.
T Consensus 261 Ie~~t~r~~gHs~~~D-dp~~yr 282 (368)
T 1w85_A 261 IETLCFRYGPHTMSGD-DPTRYR 282 (368)
T ss_dssp EEEECCCSSCSCSSCC-------
T ss_pred EEEEeeccCCCCCCCC-CccccC
Confidence 999999999998 543 344443
No 29
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.66 E-value=7.1e-17 Score=166.13 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=99.0
Q ss_pred CcccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 1 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 1 ~A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
+|+|.++++++++|||++|||++++|.+|||||+|++|++|+++||+||++.+ .+ + ..
T Consensus 156 ~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi-~~--------~---~~---------- 213 (367)
T 1umd_A 156 AAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAI-SV--------D---YR---------- 213 (367)
T ss_dssp HHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEET-TE--------E---HH----------
T ss_pred HHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeee-cc--------C---hh----------
Confidence 36788889999999999999999999999999999999999999999999431 11 0 00
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPV 158 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~ 158 (525)
. ....++...++++|||+++ .+||+|..+++++++.|.+. ..++|+
T Consensus 214 ---------------------~----------~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~ 261 (367)
T 1umd_A 214 ---------------------H----------QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPS 261 (367)
T ss_dssp ---------------------H----------HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCE
T ss_pred ---------------------h----------ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 0 0012344567999999999 79999999998877766431 257899
Q ss_pred EEEEEccCCCCchhhhhcccccc
Q 009809 159 LIHVVTEKGRGYPYAEKAADKYH 181 (525)
Q Consensus 159 ~i~v~t~kg~g~~~~~~~~~~~h 181 (525)
+|++.|.+++|++.++ ++..|+
T Consensus 262 lIe~~t~r~~Ghs~~D-~~~~Yr 283 (367)
T 1umd_A 262 LVELRVYRYGPHSSAD-DDSRYR 283 (367)
T ss_dssp EEEEECCCCSCSSTTC-CGGGTS
T ss_pred EEEEEeecCCCCCCCC-CccccC
Confidence 9999999999998764 345555
No 30
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.63 E-value=2.1e-16 Score=163.95 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=90.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+|.++++++++|||++|||++++|.+||+||+|+.|++|+++||+||++.+ .+ ....
T Consensus 175 AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i-~~-----~~~~---------------- 232 (400)
T 2bfd_A 175 AYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAI-ST-----PTSE---------------- 232 (400)
T ss_dssp HHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET-TE-----EGGG----------------
T ss_pred HHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceee-ee-----cccc----------------
Confidence 5677777889999999999999999999999999999999999999997431 11 0000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~ 159 (525)
....++...+++++||+++ .|||+|+.+|++|++.|++. ..++|++
T Consensus 233 -------------------------------~~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~l 280 (400)
T 2bfd_A 233 -------------------------------QYRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFL 280 (400)
T ss_dssp -------------------------------TCSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred -------------------------------cCCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 0001233456899999999 89999999999988877541 1478999
Q ss_pred EEEEccCCCCchhhh
Q 009809 160 IHVVTEKGRGYPYAE 174 (525)
Q Consensus 160 i~v~t~kg~g~~~~~ 174 (525)
|++.|.+-.|+...+
T Consensus 281 Ie~~tyR~~gHs~~D 295 (400)
T 2bfd_A 281 IEAMTYRIGHASTSD 295 (400)
T ss_dssp EEEECCCCC--CC--
T ss_pred EEEEeeeeCCCCCCC
Confidence 999998887776543
No 31
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.62 E-value=1.3e-15 Score=131.02 Aligned_cols=107 Identities=12% Similarity=0.230 Sum_probs=87.9
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHc
Q 009809 386 IEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQD 465 (525)
Q Consensus 386 ~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~ 465 (525)
.+|+|++||+||+++..+++|++.|+++|++++++++++++|||.+.+.++++++++++|+|++.+||++++|...+.
T Consensus 11 ~~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~-- 88 (118)
T 3ju3_A 11 EKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTG-- 88 (118)
T ss_dssp CSSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHC--
T ss_pred CCCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcC--
Confidence 357899999999999999999999999999999999999999999999999999999999999988999999876442
Q ss_pred CCCCCCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhh
Q 009809 466 GLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 512 (525)
Q Consensus 466 ~~~~~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 512 (525)
. .++ ......+. .-++++.|.++++++++
T Consensus 89 -~----~~~------~~i~~~~G-------~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 89 -I----DIK------NKILKYNG-------RHMTEDEILKSAKEILN 117 (118)
T ss_dssp -C----CCC------CCCCCBTT-------BCCCHHHHHHHHHHHHH
T ss_pred -C----Cce------eEEeeeCC-------eeCCHHHHHHHHHHHhh
Confidence 1 011 11111111 34799999999998874
No 32
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.60 E-value=6.6e-16 Score=158.11 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=90.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|+|.++++++++|||++|||++++|.+||+||+|+.|++|++|||+||++.+. + ....
T Consensus 153 A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~-t--------~~~~------------- 210 (365)
T 2ozl_A 153 ALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMG-T--------SVER------------- 210 (365)
T ss_dssp HHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETT-E--------EHHH-------------
T ss_pred HHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccC-C--------Cccc-------------
Confidence 56777788899999999999999999999999999999999999999974321 0 0000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~~~P~~ 159 (525)
. ...++... +++|++++ .|||+|+.+++++++.|.+. ..++|++
T Consensus 211 ----------------------------~---~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~l 256 (365)
T 2ozl_A 211 ----------------------------A---AASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPIL 256 (365)
T ss_dssp ----------------------------H---CSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred ----------------------------c---cCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 0 00111122 57899888 78999999999988877532 2688999
Q ss_pred EEEEccCCCCchhh
Q 009809 160 IHVVTEKGRGYPYA 173 (525)
Q Consensus 160 i~v~t~kg~g~~~~ 173 (525)
|++.|.+.+||..+
T Consensus 257 Ie~~t~R~~gHs~~ 270 (365)
T 2ozl_A 257 MELQTYRYHGHEMS 270 (365)
T ss_dssp EEEECCCSSCSSTT
T ss_pred EEEEeecCCCCCCC
Confidence 99999999999754
No 33
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.14 E-value=4.3e-12 Score=139.17 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=87.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ +++|++|+++++|+++||.||+.+ +.+.+..+.... .
T Consensus 429 A~Gaala~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~--------------~~~~~~~~~~~~-~- 490 (603)
T 4feg_A 429 AIAAKLNYPERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQY--------------GFIKDEQEDTNQ-N- 490 (603)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBC--------------HHHHHHHHHHCS-S-
T ss_pred HhhHHHhCCCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCch--------------HHHHHHHHHhcC-C-
Confidence 6678888999999999999999865 777999999999999999999865 222100000000 0
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhh--hcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK--NTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~--~~~~~~P~~ 159 (525)
+.+...+..+++..++++||++++.+ ++.+++.+++++++ + .++|++
T Consensus 491 --------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~~~--~~gP~l 539 (603)
T 4feg_A 491 --------------------------DFIGVEFNDIDFSKIADGVHMQAFRV---NKIEQLPDVFEQAKAIA--QHEPVL 539 (603)
T ss_dssp --------------------------CCCSSBCCCCCHHHHHHHTTCEEEEE---CBGGGHHHHHHHHHHHT--TTSCEE
T ss_pred --------------------------CcccCcCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHHhc--CCCcEE
Confidence 00001112344566799999999954 47888999999998 6 689999
Q ss_pred EEEEccCCCCch
Q 009809 160 IHVVTEKGRGYP 171 (525)
Q Consensus 160 i~v~t~kg~g~~ 171 (525)
|+|.|..++.++
T Consensus 540 Iev~~~~~~~~~ 551 (603)
T 4feg_A 540 IDAVITGDRPLP 551 (603)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999997766654
No 34
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.96 E-value=1.8e-10 Score=124.97 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=84.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++. .+++|++|.++++|+++||.||+.+. .+..
T Consensus 415 AiGaala~~~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~nN~~~g--------------~~~~---------- 468 (549)
T 3eya_A 415 ALGAQATEPERQVVAMCGDGGFSM--LMGDFLSVVQMKLPVKIVVFNNSVLG--------------FVAM---------- 468 (549)
T ss_dssp HHHHHHHSTTSCEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCC--------------CC------------
T ss_pred HHHHHHhCCCCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCccH--------------HHHH----------
Confidence 567788889999999999999975 47889999999999888888887441 1100
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
++.......+..++..+++..++++||+++..+ ++.++|.++++++++ .++|++|+
T Consensus 469 -------------------~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~lie 524 (549)
T 3eya_A 469 -------------------EMKAGGYLTDGTELHDTNFARIAEACGITGIRV---EKASEVDEALQRAFS--IDGPVLVD 524 (549)
T ss_dssp -----------------------------CCBCCCCCHHHHHHHTTSEEEEE---CSGGGHHHHHHHHHH--SSSCEEEE
T ss_pred -------------------HHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000000001112223445667899999999855 688899999999988 68999999
Q ss_pred EEccCCC
Q 009809 162 VVTEKGR 168 (525)
Q Consensus 162 v~t~kg~ 168 (525)
|.|.+..
T Consensus 525 v~~~~~~ 531 (549)
T 3eya_A 525 VVVAKEE 531 (549)
T ss_dssp EEBCCCC
T ss_pred EEecccc
Confidence 9996543
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.96 E-value=1.9e-10 Score=125.13 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=86.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ +++|++|.++++|+++||.||+.+ +.+. .+...
T Consensus 429 AiGaala~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~--------------~~~~-~~~~~----- 486 (566)
T 1ozh_A 429 AIGAWLVNPERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGY--------------NMVA-IQEEK----- 486 (566)
T ss_dssp HHHHHHHSTTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBC--------------HHHH-HHHHH-----
T ss_pred HHHHHHhCCCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCch--------------hHHH-HHHHH-----
Confidence 5677888889999999999999864 677999999999999999899855 2221 01000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.....|..++..+++..++++||+.+.. + ++.+++.++++++.+ .++|++|+
T Consensus 487 -----------------------~~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~gp~lie 538 (566)
T 1ozh_A 487 -----------------------KYQRLSGVEFGPMDFKAYAESFGAKGFA-V--ESAEALEPTLRAAMD--VDGPAVVA 538 (566)
T ss_dssp -----------------------HHSSCCSCBCCCCCHHHHHHTTTSEEEE-C--CSGGGHHHHHHHHHH--SSSCEEEE
T ss_pred -----------------------hcCCCccCcCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0000011122234566789999999984 4 468899999999987 68999999
Q ss_pred EEccCCCC
Q 009809 162 VVTEKGRG 169 (525)
Q Consensus 162 v~t~kg~g 169 (525)
|.|.+...
T Consensus 539 v~~~~~~~ 546 (566)
T 1ozh_A 539 IPVDYRDN 546 (566)
T ss_dssp EEBCCTTH
T ss_pred EEeCCCcC
Confidence 99987654
No 36
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.95 E-value=2.4e-10 Score=124.52 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=84.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ +++|++|+++++|+++||.||+.+ +.+. .+...
T Consensus 445 AiGaa~a~~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~--------------~~~~-~~~~~----- 502 (573)
T 2iht_A 445 AIGAQMARPDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTN--------------GLIE-LYQNI----- 502 (573)
T ss_dssp HHHHHHHSTTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBC--------------HHHH-HHHHH-----
T ss_pred HHHHHHhCCCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcc--------------hhhH-HHHHH-----
Confidence 5677788889999999999999865 678999999999998888888754 2221 11000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH--hccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA--RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
.....+. ..+..+++..++++||+++..+ ++.+++.++++++++ .++|++
T Consensus 503 -----------------------~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~l 554 (573)
T 2iht_A 503 -----------------------GHHRSHDPAVKFGGVDFVALAEANGVDATRA---TNREELLAALRKGAE--LGRPFL 554 (573)
T ss_dssp -----------------------HHSSCCGGGTBCCCCCHHHHHHHTTCEEEEC---CSHHHHHHHHHHHHT--SSSCEE
T ss_pred -----------------------hcCCCcCccccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEE
Confidence 0000000 1122345567899999999854 688999999999987 689999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|+|.|.+
T Consensus 555 iev~~~~ 561 (573)
T 2iht_A 555 IEVPVNY 561 (573)
T ss_dssp EEEEBCC
T ss_pred EEEECCC
Confidence 9999987
No 37
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.95 E-value=2.5e-10 Score=124.80 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=86.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ +++|++|+++++|+++||.||+.+ +.+. .++.......
T Consensus 435 AiGaala~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~--------------~~~~-~~~~~~~~~~ 497 (590)
T 1ybh_A 435 AIGASVANPDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHL--------------GMVM-QWEDRFYKAN 497 (590)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBC--------------HHHH-HHHHHHSTTC
T ss_pred HHHHHHhCCCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcc--------------hHHH-HHHHHhcCCc
Confidence 5677888889999999999999864 678999999999998888888754 2121 0100000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+. ...++... . .....+++..++++||+++..+ ++.++|.++++++++ .++|++|+
T Consensus 498 ~~---------~~~~~~p~--~--------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lie 553 (590)
T 1ybh_A 498 RA---------HTFLGDPA--Q--------EDEIFPNMLLFAAACGIPAARV---TKKADLREAIQTMLD--TPGPYLLD 553 (590)
T ss_dssp CC---------SCBCSCGG--G--------TTSCSSCHHHHHHHTTCCEEEE---CBHHHHHHHHHHHHH--SSSCEEEE
T ss_pred cc---------cccccccc--c--------ccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00 00000000 0 0000234566799999999844 579999999999988 68999999
Q ss_pred EEccCCCCc
Q 009809 162 VVTEKGRGY 170 (525)
Q Consensus 162 v~t~kg~g~ 170 (525)
|.|.++...
T Consensus 554 v~~~~~~~~ 562 (590)
T 1ybh_A 554 VICPHQEHV 562 (590)
T ss_dssp EECCTTCCC
T ss_pred EEecCCccc
Confidence 999988764
No 38
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.93 E-value=2.4e-10 Score=123.30 Aligned_cols=115 Identities=27% Similarity=0.368 Sum_probs=83.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ +++|++|.++++|+++||.||+.+ +.+. .+......
T Consensus 410 A~G~a~a~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~--------------~~~~-~~~~~~~~-- 470 (528)
T 1q6z_A 410 AIGVQLAEPERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTY--------------GALR-WFAGVLEA-- 470 (528)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBC--------------HHHH-HHHHHHTC--
T ss_pred HHHHHHhCCCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcc--------------hHhH-HHHHHhcC--
Confidence 5677788889999999999999866 889999999999999999888854 2121 11000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHH-HhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEY-ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
..+ ..++..+++..++++||+++. .++ +.+++.++++++++ .++|++|
T Consensus 471 --------------------------~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~--~~gp~li 519 (528)
T 1q6z_A 471 --------------------------ENVPGLDVPGIDFRALAKGYGVQAL-KAD--NLEQLKGSLQEALS--AKGPVLI 519 (528)
T ss_dssp --------------------------CSCCSCBCCCCCHHHHHHHHTCEEE-EES--SHHHHHHHHHHHHT--CSSCEEE
T ss_pred --------------------------CCcccCCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHH--CCCcEEE
Confidence 000 011123355667999999998 454 56899999999988 6899999
Q ss_pred EEEccC
Q 009809 161 HVVTEK 166 (525)
Q Consensus 161 ~v~t~k 166 (525)
++.|.+
T Consensus 520 ev~~~~ 525 (528)
T 1q6z_A 520 EVSTVS 525 (528)
T ss_dssp EEEBCC
T ss_pred EEEecC
Confidence 999964
No 39
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.92 E-value=3.8e-10 Score=125.00 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=87.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|||++|||++++ .+++|++|+++++|+++||.||+.+ +.+. .++..
T Consensus 522 AiGaalA~p~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~--------------g~~~-~~~~~----- 579 (677)
T 1t9b_A 522 AIGAQVAKPESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQ--------------GMVT-QWQSL----- 579 (677)
T ss_dssp HHHHHHHCTTSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSC--------------HHHH-HHHHH-----
T ss_pred HHHHHHhCCCCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCc--------------hhhh-hhhhh-----
Confidence 567788889999999999999985 5677999999999998888888865 2221 01000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHH-hccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
...+.+. .+...+++..++++||+.+..+ ++.++|.++++++.+ .++|++|
T Consensus 580 -----------------------~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lI 631 (677)
T 1t9b_A 580 -----------------------FYEHRYSHTHQLNPDFIKLAEAMGLKGLRV---KKQEELDAKLKEFVS--TKGPVLL 631 (677)
T ss_dssp -----------------------HSTTCCCSCCCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--CSSCEEE
T ss_pred -----------------------hcCCCcccCcCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHH--CCCcEEE
Confidence 0000000 0112345667899999999955 679999999999988 6899999
Q ss_pred EEEccCCCCc
Q 009809 161 HVVTEKGRGY 170 (525)
Q Consensus 161 ~v~t~kg~g~ 170 (525)
+|.|.++...
T Consensus 632 ev~~~~~~~~ 641 (677)
T 1t9b_A 632 EVEVDKKVPV 641 (677)
T ss_dssp EEEBCSSCCC
T ss_pred EEEecCCccc
Confidence 9999887653
No 40
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.91 E-value=1.9e-10 Score=125.76 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=87.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ +++|++|.++++|+++||.||+.+ +.+. .+..
T Consensus 433 AiGaala~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~--------------~~~~-~~~~------ 489 (589)
T 2pgn_A 433 ALGAQLAEPNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESY--------------GANW-TLMN------ 489 (589)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBC--------------HHHH-HHHH------
T ss_pred HHHHHHhCCCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCc--------------ccch-HHHH------
Confidence 5677788889999999999999865 689999999999999999888855 2221 0100
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
......+...+..+++..++++||+.+.. + ++.++|.++++++.+ .++|++|+
T Consensus 490 ----------------------~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~gp~lie 542 (589)
T 2pgn_A 490 ----------------------HQFGQNNWTEFMNPDWVGIAKAFGAYGES-V--RETGDIAGALQRAID--SGKPALIE 542 (589)
T ss_dssp ----------------------HHHSSCCSCBCCCCCHHHHHHHHTCEEEE-C--TTTCCHHHHHHHHHH--HCSCEEEE
T ss_pred ----------------------hhcCCCccccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000000112234566789999999984 4 456788999999987 58999999
Q ss_pred EEccCCCCchh
Q 009809 162 VVTEKGRGYPY 172 (525)
Q Consensus 162 v~t~kg~g~~~ 172 (525)
|.|.++....+
T Consensus 543 v~~~~~~~~~~ 553 (589)
T 2pgn_A 543 IPVSKTQGLAS 553 (589)
T ss_dssp EECCSSSSTTT
T ss_pred EEecCCCCcCc
Confidence 99998876643
No 41
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.86 E-value=8.8e-10 Score=119.64 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=80.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++. ++++|+|++|||+|+ +..++|++|.++++|+++||.||+.+. .+ +.+.
T Consensus 425 A~Gaa~a-~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~--------------~~-~~~~------- 479 (556)
T 3hww_A 425 AAGVQRA-SGKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQ--------------IF-SLLP------- 479 (556)
T ss_dssp HHHHHHH-HCCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC------------------------------
T ss_pred HHHHHhc-CCCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCC--------------cc-cCCC-------
Confidence 4566666 689999999999997 556679999999999999999998642 11 0000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
+.......+...+..+++..++++||+++..+ ++.+++.++++++++ .++|++|+
T Consensus 480 --------------------~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~lie 534 (556)
T 3hww_A 480 --------------------TPQSERERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFADAWR--TPTTTVIE 534 (556)
T ss_dssp -----------------------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHHHHTT--SSSEEEEE
T ss_pred --------------------CcchhHHHhccCCCCCCHHHHHHHcCCcEEec---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000001111223467778899999999854 678999999999988 68999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
|.|.+
T Consensus 535 v~~~~ 539 (556)
T 3hww_A 535 MVVND 539 (556)
T ss_dssp EECCS
T ss_pred EECCc
Confidence 99954
No 42
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.85 E-value=7.3e-10 Score=120.49 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=82.1
Q ss_pred cccccccC--CCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcC
Q 009809 2 AVGRDLKG--RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 79 (525)
Q Consensus 2 A~a~~l~~--~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~ 79 (525)
|++.++.. ++++|+|++|||+++++ +++|++|.++++|+++||.||+.+ +.+.. ++...
T Consensus 428 AiGaa~a~~~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~--------------~~~~~-~~~~~-- 488 (563)
T 2uz1_A 428 ALGAQVADLEAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSW--------------GATLH-FQQLA-- 488 (563)
T ss_dssp HHHHHHHHHHHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBC--------------HHHHH-HHHHH--
T ss_pred HHHHHHHhhCCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcc--------------hHHHH-HHHHh--
Confidence 45555555 88999999999999865 678999999999999888888755 22210 00000
Q ss_pred hhhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 80 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
| +. + +.+..++..+++..++++||+++..+ ++.+++.++++++.+ .++|++
T Consensus 489 --~--------------~~-------~-~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~l 539 (563)
T 2uz1_A 489 --V--------------GP-------N-RVTGTRLENGSYHGVAAAFGADGYHV---DSVESFSAALAQALA--HNRPAC 539 (563)
T ss_dssp --T--------------CT-------T-CCCSCBCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--SSSCEE
T ss_pred --c--------------CC-------C-cccCCcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCCEE
Confidence 0 00 0 00001112345567799999999855 679999999999988 689999
Q ss_pred EEEEccC
Q 009809 160 IHVVTEK 166 (525)
Q Consensus 160 i~v~t~k 166 (525)
|++.|.+
T Consensus 540 iev~~~~ 546 (563)
T 2uz1_A 540 INVAVAL 546 (563)
T ss_dssp EEEECCS
T ss_pred EEEEecc
Confidence 9999974
No 43
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=98.85 E-value=1.3e-09 Score=119.21 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=83.0
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++++ +++|++|+++++|+++||.||+.+......... .+
T Consensus 422 AiGaala~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~------------------~~ 481 (590)
T 1v5e_A 422 GLGAKNTYPDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYED------------------TN 481 (590)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSS------------------SC
T ss_pred HHHHHHhCCCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHH------------------hc
Confidence 5677788889999999999999865 688999999999999888888754210000000 00
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc-CCCCCEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT-KTTGPVLI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~-~~~~P~~i 160 (525)
|+ + +..++..+++..++++||+++..+ ++.++|.++++++.+. ..++|++|
T Consensus 482 ~~------------------------~-~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~~~~~~gp~li 533 (590)
T 1v5e_A 482 KN------------------------L-FGVDFTDVDYAKIAEAQGAKGFTV---SRIEDMDRVMAEAVAANKAGHTVVI 533 (590)
T ss_dssp CS------------------------C-CCCCCCCCCHHHHHHHTTSEEEEE---CBHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CC------------------------C-ccccCCCCCHHHHHHHcCCEEEEE---CCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 00 0 000011234456789999999854 5789999999988762 01789999
Q ss_pred EEEccCCC
Q 009809 161 HVVTEKGR 168 (525)
Q Consensus 161 ~v~t~kg~ 168 (525)
+|.|.++.
T Consensus 534 ev~~~~~~ 541 (590)
T 1v5e_A 534 DCKITQDR 541 (590)
T ss_dssp EEECCSCC
T ss_pred EEEecccc
Confidence 99998765
No 44
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.85 E-value=2.3e-09 Score=116.59 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=84.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||++++ .+++|++|+++++|+++||.||+.+. ... .+. ...
T Consensus 418 A~G~ala~~~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~--------------~~~-~~~----~~~ 476 (566)
T 2vbi_A 418 AFGNAMGSQDRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYV--------------IEI-AIH----DGP 476 (566)
T ss_dssp HHHHHHTCTTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCH--------------HHH-TTS----CCG
T ss_pred HHHHHHhCCCCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcce--------------EEE-eec----cCC
Confidence 567778888999999999999986 46779999999999888888887552 110 000 000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCc-----eEeeccCCCCHHHHHHHHHHhhhcCC-C
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-----YYIGPVDGHNVDDLVAILEEVKNTKT-T 155 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~dG~d~~~l~~al~~a~~~~~-~ 155 (525)
| .++..+++..++++||+ .+..+ ++.++|.++++++.+ . +
T Consensus 477 ----------------------------~-~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el~~al~~a~~--~~~ 522 (566)
T 2vbi_A 477 ----------------------------Y-NYIKNWDYAGLMEVFNAGEGHGLGLKA---TTPKELTEAIARAKA--NTR 522 (566)
T ss_dssp ----------------------------G-GCCCCCCTTTHHHHHHTTTCCCEEEEE---CSHHHHHHHHHHHHH--CCS
T ss_pred ----------------------------c-cCCCCCCHHHHHHHcCCCCCCccEEEe---CCHHHHHHHHHHHHh--cCC
Confidence 0 01223466778999999 88854 578999999999987 4 8
Q ss_pred CCEEEEEEccCCCC
Q 009809 156 GPVLIHVVTEKGRG 169 (525)
Q Consensus 156 ~P~~i~v~t~kg~g 169 (525)
+|++|+|.|.+...
T Consensus 523 gp~liev~~~~~~~ 536 (566)
T 2vbi_A 523 GPTLIECQIDRTDC 536 (566)
T ss_dssp SCEEEEEECCTTCC
T ss_pred CcEEEEEEeCcccC
Confidence 99999999976654
No 45
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.84 E-value=1.3e-09 Score=118.23 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=83.3
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++ +.+++|.+|.++++|+++||.||+.+. ... .+.
T Consensus 417 A~G~a~a~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~--------------~~~-~~~------- 472 (552)
T 1ovm_A 417 AFGAQTACPNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYT--------------VER-AIH------- 472 (552)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCH--------------HHH-HHS-------
T ss_pred HHHHHHhCCCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCe--------------EEE-eec-------
Confidence 56777888899999999999998 457889999999999888888887551 110 000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCc----eEeeccCCCCHHHHHHHHHHhhhcCCCCC
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL----YYIGPVDGHNVDDLVAILEEVKNTKTTGP 157 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~dG~d~~~l~~al~~a~~~~~~~P 157 (525)
++. ..+ .++..+++..++++||+ .+... ++.++|.++++++++ .++|
T Consensus 473 ---------------~~~--------~~~-~~~~~~d~~~~a~a~G~~~~~~~~~v---~~~~~l~~al~~a~~--~~gp 523 (552)
T 1ovm_A 473 ---------------GAE--------QRY-NDIALWNWTHIPQALSLDPQSECWRV---SEAEQLADVLEKVAH--HERL 523 (552)
T ss_dssp ---------------CTT--------CGG-GCCCCCCGGGSTTTSCSSCCEEEEEE---CBHHHHHHHHHHHTT--CSSE
T ss_pred ---------------cCC--------CCc-ccCCCCCHHHHHHHhCCCcCCCEEEe---CCHHHHHHHHHHHHh--CCCC
Confidence 000 000 12223566788999999 77743 578999999999987 6889
Q ss_pred EEEEEEccCC
Q 009809 158 VLIHVVTEKG 167 (525)
Q Consensus 158 ~~i~v~t~kg 167 (525)
++|+|.|.+.
T Consensus 524 ~liev~~~~~ 533 (552)
T 1ovm_A 524 SLIEVMLPKA 533 (552)
T ss_dssp EEEEEECCTT
T ss_pred EEEEEEcCcc
Confidence 9999999753
No 46
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=98.80 E-value=3.1e-09 Score=116.77 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=83.1
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcCh-
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR- 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~- 80 (525)
|++.++..++++|+|++|||+++++ +++|++|+++++|+++||.||+.+ +.+ +.++......
T Consensus 451 AiGaala~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~--------------~~~-~~~~~~~~~~~ 513 (616)
T 2pan_A 451 ALGVCAADPKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYL--------------GLI-RQSQRAFDMDY 513 (616)
T ss_dssp HHHHHHHCTTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBC--------------HHH-HHHGGGGTCCC
T ss_pred HHHHHHhCCCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcc--------------hHH-HHHHHHhcCCc
Confidence 5677888889999999999999865 678999999999998888888754 111 1111100000
Q ss_pred ----hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhc--CC
Q 009809 81 ----PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KT 154 (525)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~--~~ 154 (525)
.|.. . .... .....+++..++++||+++..+ ++.++|.++++++.+. ..
T Consensus 514 ~~~~~~~~-----------~--~~~~---------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~~~~~~ 568 (616)
T 2pan_A 514 CVQLAFEN-----------I--NSSE---------VNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAFEQAKALMAQY 568 (616)
T ss_dssp SCBCCCCC-----------T--TCGG---------GTTCCCCHHHHHHHTTCEEEEE---CSGGGHHHHHHHHHHHHHHH
T ss_pred cccccccc-----------c--cccc---------CCCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHhhcccC
Confidence 0000 0 0000 0000134456799999999954 5688888888887641 03
Q ss_pred CCCEEEEEEccCCCC
Q 009809 155 TGPVLIHVVTEKGRG 169 (525)
Q Consensus 155 ~~P~~i~v~t~kg~g 169 (525)
++|++|+|.|.++.-
T Consensus 569 ~gp~lIev~~~~~~~ 583 (616)
T 2pan_A 569 RVPVVVEVILERVTN 583 (616)
T ss_dssp CSCEEEEEEBCSCCC
T ss_pred CCcEEEEEEeccccc
Confidence 789999999998773
No 47
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.79 E-value=3.2e-09 Score=115.46 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=82.8
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||+++ +.+++|++|.++++|+++||.||+.+. .+.. .+....
T Consensus 431 A~G~ala~~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~--------------~~~~----~~~~~~ 490 (565)
T 2nxw_A 431 GIGAQCVSGGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWE--------------MLRT----FQPESA 490 (565)
T ss_dssp HHHHHHHTTTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCH--------------HHHH----HCTTCG
T ss_pred HHHHHHhCCCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCc--------------EEee----ecccCC
Confidence 56677778899999999999998 888999999999999888888887541 1100 000000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCE-EE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPV-LI 160 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~-~i 160 (525)
| .+...+++..++++||+.+..+ ++.+++.++++++.+ .++|+ +|
T Consensus 491 ~-----------------------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~~li 536 (565)
T 2nxw_A 491 F-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELKAALDKAFA--TRGRFQLI 536 (565)
T ss_dssp G-----------------------------GBCCCCCHHHHTGGGTSEEEEE---CBHHHHHHHHHHHHH--CCSSCEEE
T ss_pred C-----------------------------CcCCCCCHHHHHHHcCCCEEEe---CCHHHHHHHHHHHHh--cCCCeEEE
Confidence 0 0112334566799999999854 578999999999987 57887 99
Q ss_pred EEEccCC
Q 009809 161 HVVTEKG 167 (525)
Q Consensus 161 ~v~t~kg 167 (525)
+|.|.+.
T Consensus 537 ev~~~~~ 543 (565)
T 2nxw_A 537 EAMIPRG 543 (565)
T ss_dssp EEECCTT
T ss_pred EEEcccc
Confidence 9999654
No 48
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.78 E-value=2.2e-09 Score=116.88 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=82.4
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||++++ .+++|++|.++++|+++||.||+.+ +... .+.
T Consensus 434 A~Gaala~~~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~--------------~~~~-~~~------- 489 (570)
T 2vbf_A 434 ALGSQIADKESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGY--------------TVER-EIH------- 489 (570)
T ss_dssp HHHHHHHCTTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSC--------------HHHH-HHS-------
T ss_pred HHHHHHhCCCCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCch--------------HHHH-HHh-------
Confidence 567788888999999999999986 4677999999999999888888755 1110 000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCce-----EeeccCCCCHHHHHHHHHHh-hhcCCC
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-----YIGPVDGHNVDDLVAILEEV-KNTKTT 155 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~dG~d~~~l~~al~~a-~~~~~~ 155 (525)
++. ..+ .++..+++..++++||+. +..+ ++.+++.++++++ ++ .+
T Consensus 490 ---------------~~~--------~~~-~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el~~al~~a~~~--~~ 540 (570)
T 2vbf_A 490 ---------------GPT--------QSY-NDIPMWNYSKLPETFGATEDRVVSKIV---RTENEFVSVMKEAQAD--VN 540 (570)
T ss_dssp ---------------CTT--------CGG-GCCCCCCGGGHHHHTTCCTTTEEEEEE---CBHHHHHHHHHHHHHC--TT
T ss_pred ---------------ccC--------CCc-cCCCCCCHHHHHHHcCCCcCCcceEEe---cCHHHHHHHHHHHHhc--CC
Confidence 000 000 122235667789999998 6644 6799999999984 55 68
Q ss_pred CCEEEEEEccCCC
Q 009809 156 GPVLIHVVTEKGR 168 (525)
Q Consensus 156 ~P~~i~v~t~kg~ 168 (525)
+|++|++.|.+..
T Consensus 541 ~p~liev~~~~~~ 553 (570)
T 2vbf_A 541 RMYWIELVLEKED 553 (570)
T ss_dssp SEEEEEEECCTTC
T ss_pred CcEEEEEEcCccc
Confidence 8999999997543
No 49
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.74 E-value=5.6e-09 Score=113.60 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=82.2
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++..++++|+|++|||++++ .+++|++|.++++|+++||.||+.+. .+. .+. ...
T Consensus 422 A~G~ala~~~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~--------------~~~-~~~----~~~ 480 (568)
T 2wvg_A 422 AFGYAVGAPERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYT--------------IEV-MIH----DGP 480 (568)
T ss_dssp HHHHHHHCTTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCH--------------HHH-TTS----CCG
T ss_pred HHHHHHhCCCCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcce--------------Eee-eec----cCC
Confidence 567788888999999999999985 57779999999999888887877542 110 000 000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCc---------eEeeccCCCCHHHHHHHHHHhhhc
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL---------YYIGPVDGHNVDDLVAILEEVKNT 152 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~dG~d~~~l~~al~~a~~~ 152 (525)
|+ ++..+++..++++||+ .+... ++.+++.++++++.+.
T Consensus 481 ~~-----------------------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v---~~~~el~~al~~a~~~ 528 (568)
T 2wvg_A 481 YN-----------------------------NIKNWDYAGLMEVFNGNGGYDSGAGKGLKA---KTGGELAEAIKVALAN 528 (568)
T ss_dssp GG-----------------------------CCCCCCHHHHHHHHHCTTSSSCCCCEEEEE---SBHHHHHHHHHHHHHC
T ss_pred Cc-----------------------------CCCCCCHHHHHHHhCCCcccccCCcceEEe---CCHHHHHHHHHHHHhc
Confidence 00 1112334456888998 77744 6789999999999872
Q ss_pred CCCCCEEEEEEccCCCCc
Q 009809 153 KTTGPVLIHVVTEKGRGY 170 (525)
Q Consensus 153 ~~~~P~~i~v~t~kg~g~ 170 (525)
.++|++|++.|.+....
T Consensus 529 -~~gp~liev~~~~~~~~ 545 (568)
T 2wvg_A 529 -TDGPTLIECFIGREDCT 545 (568)
T ss_dssp -CSSCEEEEEECCTTCCC
T ss_pred -CCCcEEEEEEcCccccC
Confidence 28999999999876543
No 50
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.74 E-value=4.9e-09 Score=114.27 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=75.9
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++ ++++|+|++|||+++ +..++|++|.++++|+++||.||+.+. .+. .+..
T Consensus 445 AiGaa~--~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g--------------~~~-~~~~------ 499 (578)
T 3lq1_A 445 ALGASV--VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGG--------------IFS-FLPQ------ 499 (578)
T ss_dssp HHHHTT--TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC-------------------------------
T ss_pred HHHHhc--CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCc--------------ccc-cccc------
Confidence 344443 588999999999997 557779999999999999999998551 110 0000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.+.....+.+......+++..++++||+.+..+ ++.++|.++++++++ .++|++|+
T Consensus 500 -------------------~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lie 555 (578)
T 3lq1_A 500 -------------------ANEPKYFESLFGTSTELDFRFAAAFYDADYHEA---KSVDELEEAIDKASY--HKGLDIIE 555 (578)
T ss_dssp ----------------------------------CCCTHHHHHHTTCEEEEC---CSHHHHHHHHHHHTT--SSSEEEEE
T ss_pred -------------------ccccchhhhhccCCCCCCHHHHHHHcCCceEec---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000000000101122457778899999999854 688999999999988 68999999
Q ss_pred EEccCCCC
Q 009809 162 VVTEKGRG 169 (525)
Q Consensus 162 v~t~kg~g 169 (525)
|.|.+...
T Consensus 556 v~~~~~~~ 563 (578)
T 3lq1_A 556 VKTNRHEN 563 (578)
T ss_dssp EC------
T ss_pred EECCcccc
Confidence 99965443
No 51
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.71 E-value=2.4e-09 Score=117.30 Aligned_cols=117 Identities=20% Similarity=0.146 Sum_probs=81.6
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRP 81 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~ 81 (525)
|++.++. ++++|+|++|||+++++ +++|++|.++++|+++||.||+.+. .+. .+..
T Consensus 464 AiGaala-~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~--------------i~~-~~~~------ 519 (604)
T 2x7j_A 464 AMGVCEG-TKAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGG--------------IFS-FLPQ------ 519 (604)
T ss_dssp HHHHHHH-HTSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCG--------------GGG-GSGG------
T ss_pred HHHHHhc-CCCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCc--------------ccc-cCCC------
Confidence 4555666 58899999999999865 5669999999999999888887552 110 0000
Q ss_pred hHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEE
Q 009809 82 LRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~ 161 (525)
.+.......+......+++..++++||+++.. + ++.+++.++++++.+ .++|++|+
T Consensus 520 -------------------~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~gp~lie 575 (604)
T 2x7j_A 520 -------------------ASEKTHFEDLFGTPTGLDFKHAAALYGGTYSC-P--ASWDEFKTAYAPQAD--KPGLHLIE 575 (604)
T ss_dssp -------------------GSCHHHHHHHTTCCCCCCTHHHHHHTTCEEEC-C--SSHHHHHHHCCCCCS--SCCEEEEE
T ss_pred -------------------CccchhhHhhccCCCCCCHHHHHHHcCCeEEe-c--CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000011121123345778889999999984 4 578999999998876 68999999
Q ss_pred EEccC
Q 009809 162 VVTEK 166 (525)
Q Consensus 162 v~t~k 166 (525)
|.|.+
T Consensus 576 v~~~~ 580 (604)
T 2x7j_A 576 IKTDR 580 (604)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 99964
No 52
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.71 E-value=1.3e-08 Score=110.60 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=81.9
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCC-cCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~-~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++. ++++|+|++|||+++. .+++|++|.++++|+++||.||+.+ ........+. +..
T Consensus 430 AiGaa~a-~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~----~~~----------- 491 (564)
T 2q28_A 430 AIGASVT-SGSPVVAIEGDSAFGF--SGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGA----GAP----------- 491 (564)
T ss_dssp HHHHHHH-HCSCEEEEEEHHHHHT--TGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSS----CCC-----------
T ss_pred HHHHhhc-CCCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhcc----CCc-----------
Confidence 4556666 8899999999999974 5677999999999999999898752 2100000000 000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhcc-ccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~ 159 (525)
. ..+. ..+++..++++||+++..+ ++.+++.++++++.+ .++|++
T Consensus 492 --------------------~---------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 537 (564)
T 2q28_A 492 --------------------S---------PTDLLHHARYDKLMDAFRGVGYNV---TTTDELRHALTTGIQ--SRKPTI 537 (564)
T ss_dssp --------------------C---------TTBCCTTCCGGGGGGGGTCEEEEE---CSHHHHHHHHHHHHH--HTSCEE
T ss_pred --------------------c---------ccccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEE
Confidence 0 0000 1245677899999999855 679999999999987 689999
Q ss_pred EEEEccCCCC
Q 009809 160 IHVVTEKGRG 169 (525)
Q Consensus 160 i~v~t~kg~g 169 (525)
|+|.|.+...
T Consensus 538 iev~~~~~~~ 547 (564)
T 2q28_A 538 INVVIDPAAG 547 (564)
T ss_dssp EEEEBCTTSS
T ss_pred EEEEeccccC
Confidence 9999976433
No 53
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.68 E-value=1e-08 Score=111.52 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=81.7
Q ss_pred cccccccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCC-cCCCCCCCCCCCcchhhhHHHhhhhcCh
Q 009809 2 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPPVGALSSALSRLQSNR 80 (525)
Q Consensus 2 A~a~~l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~-~~~~~~~~g~~~~~g~~~~~l~~~~~~~ 80 (525)
|++.++. ++++|+|++|||+++ +.+++|++|.++++|+++||.||+.+ ..... ... . +...
T Consensus 435 AiGaala-~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~-~~~--~--~~~~---------- 496 (568)
T 2c31_A 435 CVAAAAV-TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEA-DPQ--P--GVIS---------- 496 (568)
T ss_dssp HHHHHHH-HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCCC-CSB--T--TBCC----------
T ss_pred HHHHHhC-CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHH-Hhh--c--CCcc----------
Confidence 4556666 889999999999997 56788999999999999999998752 21100 000 0 0000
Q ss_pred hhHHHHHHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEE
Q 009809 81 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i 160 (525)
......+++..++++||+++..+ ++.+++.++++++.+ .++|++|
T Consensus 497 ------------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~li 541 (568)
T 2c31_A 497 ------------------------------CTRLTRGRYDMMMEAFGGKGYVA---NTPAELKAALEEAVA--SGKPCLI 541 (568)
T ss_dssp ------------------------------TTBCCCCCHHHHHHTTTCEEEEE---SSHHHHHHHHHHHHH--HTSCEEE
T ss_pred ------------------------------cCcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00011234456789999999855 679999999999987 6899999
Q ss_pred EEEccCCCC
Q 009809 161 HVVTEKGRG 169 (525)
Q Consensus 161 ~v~t~kg~g 169 (525)
+|.|.+...
T Consensus 542 ev~~~~~~~ 550 (568)
T 2c31_A 542 NAMIDPDAG 550 (568)
T ss_dssp EEEBCTTSS
T ss_pred EEEeccccC
Confidence 999976544
No 54
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.64 E-value=5.4e-09 Score=113.64 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=75.6
Q ss_pred ccCCCCeEEEEEcccccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHH
Q 009809 7 LKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELR 86 (525)
Q Consensus 7 l~~~~~~v~~~~GDG~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~ 86 (525)
.++.+++|+|++|||++++ .+++|++|+++++|+++||.||+.+ +... .+.
T Consensus 431 ~~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~--------------~~~~-~~~------------ 481 (563)
T 2vk8_A 431 EIDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGY--------------TIQK-LIH------------ 481 (563)
T ss_dssp HHCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSC--------------HHHH-HHS------------
T ss_pred ccCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcc--------------hhhh-hhh------------
Confidence 3445599999999999975 5788999999999999999888755 1110 000
Q ss_pred HHHhhhhcccCCchHHHHHHHHHHHhccccCCccccccccCce---EeeccCCCCHHHHHHHHH-HhhhcCCCCCEEEEE
Q 009809 87 EVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY---YIGPVDGHNVDDLVAILE-EVKNTKTTGPVLIHV 162 (525)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~dG~d~~~l~~al~-~a~~~~~~~P~~i~v 162 (525)
++. ..+ .++..+++..++++||++ +.. + ++.++|.++++ ++.+. .++|++|+|
T Consensus 482 ----------~~~--------~~~-~~~~~~d~~~~a~a~G~~~~~~~~-v--~~~~el~~al~~~a~~~-~~~p~liev 538 (563)
T 2vk8_A 482 ----------GPK--------AQY-NEIQGWDHLSLLPTFGAKDYETHR-V--ATTGEWDKLTQDKSFND-NSKIRMIEV 538 (563)
T ss_dssp ----------CTT--------CGG-GCCCCCCGGGHHHHTTCSSEEEEE-E--CBHHHHHHHHTCTTTTS-CSSEEEEEE
T ss_pred ----------CCC--------CCc-ccCCCCCHHHHHHHhCCCCCcEEE-e--cCHHHHHHHHHHHHHhC-CCCcEEEEE
Confidence 000 000 112234667789999998 763 4 46899999998 77662 347999999
Q ss_pred EccCC
Q 009809 163 VTEKG 167 (525)
Q Consensus 163 ~t~kg 167 (525)
.|.+.
T Consensus 539 ~~~~~ 543 (563)
T 2vk8_A 539 MLPVF 543 (563)
T ss_dssp ECCTT
T ss_pred EeCcc
Confidence 99643
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.72 E-value=4.1e-05 Score=89.49 Aligned_cols=115 Identities=21% Similarity=0.299 Sum_probs=76.7
Q ss_pred CCeEEEEEccc-ccccchhHHHHHhccccCCCEEEEEECCCCCcCCCCCCCCCCCcchhhhHHHhhhhcChhhHHHHHHH
Q 009809 11 KNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 89 (525)
Q Consensus 11 ~~~v~~~~GDG-~~~eG~~~Ealn~A~~~~l~l~~iv~~N~~~~~~~~~~~g~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 89 (525)
++.||||.||| +++.| ..+|.+|.+.++|+++||.||+.+.... .+.......+... .
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~tg-~Q~s~~t~~~~~t----------~-------- 1011 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTG-GQSSKATPTGAVA----------K-------- 1011 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTT-CBCCTTSCTTCCB----------B--------
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHhHH-hhhccCCCCCcee----------e--------
Confidence 47899999999 88755 5569999999999999999998653111 0111100000000 0
Q ss_pred hhhhcccCCchHHHHHHHHHHHhccccCCccccccccCceEeeccCC-CCHHHHHHHHHHhhhcCCCCCEEEEEEcc
Q 009809 90 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTE 165 (525)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dG-~d~~~l~~al~~a~~~~~~~P~~i~v~t~ 165 (525)
+...| +....+++..+++++|+.++..+.= .+.+++.+++++|.+ .++|++|++.+.
T Consensus 1012 ---~~~~g--------------~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1012 ---FAAAG--------------KRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYAT 1069 (1231)
T ss_dssp ---TBTTC--------------CSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECC
T ss_pred ---ecccC--------------CCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeec
Confidence 00000 0111245567799999998865433 699999999999998 689999999884
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=94.97 E-value=0.072 Score=57.69 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=78.1
Q ss_pred CeeeccchHHHHHHHHHHHhcCCCeE-E-EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACEGLKP-F-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 319 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~G~~p-i-~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~ 319 (525)
+++- ...|+++..+|.|.|....|| + +.|+++.+..++--+. .+.+.++|++++...... .+. ..+|.....
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~-~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLY-DAAMDNIPVVAILGSRPQRELNM--DAFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHH-HHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHH-HHHhcCCCEEEEcCCCCcccCCC--CcccccCHH
Confidence 3444 599999999999999974443 3 3347888766665543 455678998888755443 222 235655555
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCCC
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 362 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~~ 362 (525)
.+++.+..+ .+.+.+++++...+..|+.. ..+||+| ++...
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 788877666 67788888888888877653 2379999 88753
No 57
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=94.18 E-value=0.21 Score=53.55 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=93.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeEE-Eeech
Q 009809 201 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYS 275 (525)
Q Consensus 201 ~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~ 275 (525)
++..+++.+.|.+..- +.++.+ .|+..+ +.+.+. +=|++.+ ..|+++..+|.|.|.. |...+ +.|++
T Consensus 4 ~~~a~~l~~~L~~~GV--~~vfg~----PG~~~~~l~~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 75 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGV--EHLFGL----HGAHIDTIFQACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAG 75 (563)
T ss_dssp EEHHHHHHHHHHHHTC--CCEEEC----CCGGGHHHHHHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHCCC--CEEEEC----CCCchHHHHHHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccC
Confidence 3445555555554432 223332 233332 334333 3566665 9999999999999996 65433 44588
Q ss_pred hhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcc-hhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----C
Q 009809 276 SFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----D 350 (525)
Q Consensus 276 ~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~-~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~ 350 (525)
+....++--+. .+.+.++|++++..........-..||. .+...+++.+..+ .+...+++++...+..|+.. .
T Consensus 76 pG~~N~~~~l~-~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~ 153 (563)
T 2uz1_A 76 GGFTNAVTPIA-NAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAP 153 (563)
T ss_dssp HHHHTTHHHHH-HHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred ccHHHHHHHHH-HHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 88766665543 4566789988887554431111124676 6666788877655 55666777777777776642 3
Q ss_pred CCcEEEEecCC
Q 009809 351 DRPSCFRYPRG 361 (525)
Q Consensus 351 ~~Pv~i~~~~~ 361 (525)
.+||+|-++..
T Consensus 154 ~GPV~l~iP~d 164 (563)
T 2uz1_A 154 RGPVLLDLPWD 164 (563)
T ss_dssp CCCEEEEEEHH
T ss_pred CceEEEEeCHH
Confidence 48999987764
No 58
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=94.09 E-value=0.29 Score=52.89 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=78.7
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEE-EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 319 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~ 319 (525)
|++.+ ..|+++..+|.|.|.. |...+ +.|+++....++--+ ..+.+.++||+++...... .+. ..+|.....
T Consensus 52 ~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVLP-RHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIV 127 (590)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHH
T ss_pred cEEee-CCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC--CcccccCHH
Confidence 45554 8999999999999996 65443 445888876665553 3455678998888754432 222 246666666
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
.+++.+-.+ .+...+++++...+..|+.. ..+||++-++..
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 788877766 56677888888888888753 247999987653
No 59
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=94.00 E-value=0.31 Score=52.29 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=71.2
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeE-EEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcc----
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 315 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~p-i~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~---- 315 (525)
|++.+ ..|+++..+|.|.|.. | .+ ++.|+++....++--+. .+.+.++|++++...... .+.+...||.
T Consensus 43 ~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIYC-CNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNALG-GAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHH-HHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEee-CcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHH-HHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 55554 9999999999999985 8 44 34458888766666544 466789999888755443 2222223432
Q ss_pred --hhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecCCC
Q 009809 316 --SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 362 (525)
Q Consensus 316 --~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~~ 362 (525)
.....+++.+--+ .+.+.+++++...+..|+. ...+||+|-++...
T Consensus 120 ~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCA-AESITDAHSAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 1235677776554 3334444444444444432 13489999888753
No 60
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=93.96 E-value=0.34 Score=52.55 Aligned_cols=112 Identities=10% Similarity=0.018 Sum_probs=75.9
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEE--EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPF--CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 318 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi--~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d 318 (525)
|++ ....|+++..+|.|.|.. |.+|. +.|+++....++.-+ ..+.+.+.|++++...... .+. ..+|..+.
T Consensus 67 ~~i-~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~--~~~Q~~d~ 142 (616)
T 2pan_A 67 RHI-LARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITAL-YSASADSIPILCITGQAPRARLHK--EDFQAVDI 142 (616)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTT--TCTTCCCH
T ss_pred cEE-eeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCc--ccccccCH
Confidence 444 459999999999999996 45543 346888876666664 4566789998888744332 222 23455545
Q ss_pred hhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecC
Q 009809 319 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPR 360 (525)
Q Consensus 319 ~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~ 360 (525)
..+++.+-.+. +...++.++..++..|+.. ..+||+|-++.
T Consensus 143 ~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 143 EAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp HHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred HHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 56777766653 4556678888888877653 25799987765
No 61
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=93.61 E-value=0.78 Score=49.18 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=74.0
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcc-----
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG----- 315 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~----- 315 (525)
|++.+ ..|+++..+|.|.|.. |.-.++.|+++....++.-+. .+.+.++|++++...... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gia-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~ 120 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIG-GAYAENLPVILISGAPNNNDHAAGHVLHHALGKTD 120 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHHHHH-HHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred eEecc-CcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHHHH-HHhhhCCCEEEEeCCCChhHhccCcceeeeccccc
Confidence 56665 9999999999999975 833344458888766666543 466789998888754443 2322223442
Q ss_pred h-hhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecCC
Q 009809 316 S-FDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 361 (525)
Q Consensus 316 ~-~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~~ 361 (525)
. ....+++.+--+ .+...+++++...+..|+. ...+||+|-++..
T Consensus 121 ~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 121 YHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp CCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred hHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 1 235677776665 4455566666655555543 1248999988764
No 62
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.54 E-value=0.17 Score=54.53 Aligned_cols=115 Identities=18% Similarity=0.074 Sum_probs=78.5
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCe-EEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 318 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~-pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d 318 (525)
=|++.+ ..|+++..+|.|.|.. |.. .++.|+++....++.-+ ..+.+.++|++++...... .+. +..||..+.
T Consensus 49 i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~-~~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVLT-RHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFP-NDTHQCLDS 125 (573)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCT-TTSTTCCCH
T ss_pred CeEEee-CCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCC-cCccccCCH
Confidence 345554 8999999999999996 543 34445888877776664 4456678998888754432 222 135777777
Q ss_pred hhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 319 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 319 ~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
..+++.+..+ .+...+++++...+..|+.. ..+||+|-++..
T Consensus 126 ~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 7888877665 45566777777777777642 247999987753
No 63
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.54 E-value=0.54 Score=50.21 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=74.7
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeE-EEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 319 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~p-i~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~ 319 (525)
|++.+ ..|+++..+|.|.|.. |... +++|+++....++--+ ..+.+.++||+++...... .+. ..+|.....
T Consensus 43 ~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (549)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHH
Confidence 56655 8999999999999995 6543 3446888876665553 4566689999888744332 222 245555556
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEecC
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 360 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~~~ 360 (525)
.+++.+-.+ .+...+++++...+..|+. ...+||+|-++.
T Consensus 119 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 161 (549)
T 3eya_A 119 ELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPG 161 (549)
T ss_dssp HHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEH
T ss_pred HHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 778876654 4455566666666666543 246899998765
No 64
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=93.47 E-value=0.59 Score=50.58 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=71.0
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEE-EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 319 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~ 319 (525)
|++.+ ..|+++..+|.|.|.. |...+ +.|+++....++--+ ..+.+.++||+++...... .+. ..+|.....
T Consensus 52 ~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~ 127 (603)
T 4feg_A 52 HYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNM--DTFQEMNEN 127 (603)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCG
T ss_pred eEEEe-cChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCC--CccccccHH
Confidence 56655 8999999999999985 65443 345888876666553 4566789999888644332 222 234555455
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHH----HHHHhcCCCcEEEEecCC
Q 009809 320 TFMACLPNMVVMAPSDEAELFHMV----ATAAAIDDRPSCFRYPRG 361 (525)
Q Consensus 320 ~~~~~ipg~~v~~P~~~~e~~~~~----~~a~~~~~~Pv~i~~~~~ 361 (525)
.+++.+-.+. +...+++++...+ +.|.. ..+||+|-++..
T Consensus 128 ~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 128 PIYADVADYN-VTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp GGGTTTCSEE-EECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred HHhhhhceEE-EEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 6777665543 2333444444444 44443 468999988764
No 65
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.39 E-value=0.23 Score=53.34 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=74.5
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeE-EEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~p-i~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ ..|+++..+|.|.|.. |... ++.|+++....++--+ ..+.+.++|++++.........+-..||..+...+
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~ 127 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAM 127 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC------CCCHHHH
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCCCcccccCHHHH
Confidence 55555 9999999999999995 6543 4445888876665553 34556789988887544321111134676666678
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+..+ .+...+++++...+..|+.. ..+||+|-++..
T Consensus 128 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 128 FSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 8877665 45566777777777666542 258999987764
No 66
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=93.30 E-value=0.51 Score=50.66 Aligned_cols=153 Identities=14% Similarity=0.017 Sum_probs=84.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch---HHHHHhCCCCeeeccchHHHHHHHHHHHhcC-CCeE-EEeec
Q 009809 200 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIY 274 (525)
Q Consensus 200 ~~~~~~a~~~~l~~~~~~d~~~v~~~~D~~~s~~l---~~~~~~~p~r~~~~gIaE~~~~~~a~G~A~~-G~~p-i~~t~ 274 (525)
.++..+++.+.|.+..- +.++..+ |+..+ +.+.+ .+.+.+=....|+++..+|.|.|.. |... ++.|+
T Consensus 20 ~~~~a~~lv~~L~~~GV---~~vfg~P---G~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~Ts 92 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGA---QAMFGIP---GDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTY 92 (565)
T ss_dssp CCBHHHHHHHHHHHTTC---CCEEECC---CGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECT
T ss_pred CcCHHHHHHHHHHHcCC---CEEEECC---CcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 45666666655554332 2233222 33332 33433 3444444559999999999999996 6443 44458
Q ss_pred hhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcc---hh-hhhhhhcCCCcEEEccCCHHHHHHHHHHHHh
Q 009809 275 SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---SF-DVTFMACLPNMVVMAPSDEAELFHMVATAAA 348 (525)
Q Consensus 275 ~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~---~~-d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~ 348 (525)
++....++--+ ..+.+.++|++++...... .+.+...|++ .. ...+++.+-.+. +...+++++...+..|+.
T Consensus 93 GpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~ 170 (565)
T 2nxw_A 93 GAGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQ-ARLDDPAKAPAEIARVLG 170 (565)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCE-EECCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEE-EEeCCHHHHHHHHHHHHH
Confidence 88876665553 4466689998888754332 2332233332 22 346777766553 333444444444444432
Q ss_pred ---cCCCcEEEEecCC
Q 009809 349 ---IDDRPSCFRYPRG 361 (525)
Q Consensus 349 ---~~~~Pv~i~~~~~ 361 (525)
...+||+|-+++.
T Consensus 171 ~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 171 AARAQSRPVYLEIPRN 186 (565)
T ss_dssp HHHHHTCCEEEEEEGG
T ss_pred HHHhCCCCEEEECChh
Confidence 1368999988854
No 67
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=93.16 E-value=0.69 Score=49.07 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCC-CEEEEecCCCCCcchHHHHHhC-CC-CeeeccchHHHHHHHHHHHhcC-CCeEEE-eechhhHHHHH
Q 009809 208 AEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLRRF-PT-RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAY 282 (525)
Q Consensus 208 ~~~l~~~~~~d~-~~v~~~~D~~~s~~l~~~~~~~-p~-r~~~~gIaE~~~~~~a~G~A~~-G~~pi~-~t~~~F~~~a~ 282 (525)
++.|.+.+++.. +.++.. .|+.. .+|.+.. ++ |++. ...|+++..+|.|.|.. |...++ .|+++....++
T Consensus 5 a~~l~~~L~~~GV~~vfg~---PG~~~-~~l~~al~~~i~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~ 79 (528)
T 1q6z_A 5 HGTTYELLRRQGIDTVFGN---PGSNA-LPFLKDFPEDFRYIL-ALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAM 79 (528)
T ss_dssp HHHHHHHHHHTTCCEEEEC---CCGGG-HHHHTTCCTTCEEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTH
T ss_pred HHHHHHHHHHCCCCEEEEC---CCcch-HHHHHHHhhcCcEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHH
Confidence 345555555543 333332 23332 2344433 22 4554 48999999999999996 665554 45778876666
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh----cCCCcEEE
Q 009809 283 DQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCF 356 (525)
Q Consensus 283 dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~----~~~~Pv~i 356 (525)
.-+. .+.+.++||+++...... .+.+..+|. .+...+++.+..+ .+.+.+++++...+..|+. ...+||++
T Consensus 80 ~~l~-~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 156 (528)
T 1q6z_A 80 GALS-NAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYL 156 (528)
T ss_dssp HHHH-HHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEE
T ss_pred HHHH-HHhhcCCCEEEEeCCCcccccCCCccccc-ccHHHHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 6654 466789999888754432 233323331 3445677776655 4555666666666666654 23469999
Q ss_pred EecCC
Q 009809 357 RYPRG 361 (525)
Q Consensus 357 ~~~~~ 361 (525)
-++..
T Consensus 157 ~iP~d 161 (528)
T 1q6z_A 157 SVPYD 161 (528)
T ss_dssp EEEGG
T ss_pred Eechh
Confidence 88764
No 68
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=93.04 E-value=1.5 Score=46.90 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecCCCCCcch---HHHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCeE-EEeechhh
Q 009809 205 TYFAEALIAEAEVDK-DVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSF 277 (525)
Q Consensus 205 ~a~~~~l~~~~~~d~-~~v~~~~D~~~s~~l---~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~p-i~~t~~~F 277 (525)
...++.|.+.+++.. +.+ ++- .|+..+ +.+.+ .++ +++- ...|+++.-+|.|.|.. |... ++.|+++.
T Consensus 8 ~~~a~~lv~~L~~~GV~~v-Fg~--PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG 82 (556)
T 3hww_A 8 RRWAAVILEALTRHGVRHI-CIA--PGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTA 82 (556)
T ss_dssp HHHHHHHHHHHHTTTCCEE-EEC--CCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred hHHHHHHHHHHHHCCCCEE-EEc--CCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcH
Confidence 345667777776654 333 331 234333 33332 344 5555 47899999999999985 7544 44458888
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEE--ccCC---HHHHHHHHHHHHhc-
Q 009809 278 MQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVM--APSD---EAELFHMVATAAAI- 349 (525)
Q Consensus 278 ~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~--~P~~---~~e~~~~~~~a~~~- 349 (525)
...++--+ ..+.+.++||+++...... .+. ..||..+...+++.+-.+..- .|.+ ++++...+..|+..
T Consensus 83 ~~N~~~gi-a~A~~d~vPll~itG~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~ 159 (556)
T 3hww_A 83 VANLYPAL-IEAGLTGEKLILLTADRPPELIDC--GANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTL 159 (556)
T ss_dssp HHTTHHHH-HHHHHHCCCEEEEEEECCGGGSSS--SCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSC
T ss_pred HHhhhHHH-HHHHHhCCCeEEEeCCCCHHHhcc--CCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcC
Confidence 76665553 4456678999888744332 232 247776666777776665433 3432 45688888888853
Q ss_pred CCCcEEEEecCC
Q 009809 350 DDRPSCFRYPRG 361 (525)
Q Consensus 350 ~~~Pv~i~~~~~ 361 (525)
..+||+|-++..
T Consensus 160 r~GPV~i~iP~d 171 (556)
T 3hww_A 160 HAGGVHINCPFA 171 (556)
T ss_dssp CSSCEEEEEECC
T ss_pred CCCCEEEeCCcC
Confidence 347999988763
No 69
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.81 E-value=0.38 Score=51.93 Aligned_cols=114 Identities=8% Similarity=-0.058 Sum_probs=76.4
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCe-EEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCC-CCcchhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGP-THCGSFDVT 320 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~-pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~-tH~~~~d~~ 320 (525)
|++.+ ..|+++..+|.|.|.. |.. .++.|+++....++--+ ..+.+.++||+++..........-. .||..+...
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~ 122 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS 122 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCcccccChhh
Confidence 56655 9999999999999996 543 44556888876555553 4466789998888754442111112 577776667
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
++.+..+ .+...+++++...+..|+.. ..+||+|-++..
T Consensus 123 -~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 123 -FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp -GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred -ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 7766655 45566777777777766542 347999988764
No 70
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=92.78 E-value=0.49 Score=50.75 Aligned_cols=116 Identities=10% Similarity=-0.020 Sum_probs=76.6
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCe-EEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 318 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~-pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d 318 (525)
=|++.+ ..|+++..+|.|.|.. |.. .++.|+++....++--+ ..+.+.++|++++...... .+..-..+|..+.
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq 125 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQ 125 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCH
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCCcccccCH
Confidence 356665 9999999999999996 653 44556888887776554 4456679999888754432 1210124565555
Q ss_pred hhhhhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecCC
Q 009809 319 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 361 (525)
Q Consensus 319 ~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~~ 361 (525)
..+++.+-.+ .+...+++++...+..|+.. ..+||+|-++..
T Consensus 126 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 126 MNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHSGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHhhhhe-eeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 5677876665 44455666666666666542 457999987764
No 71
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.76 E-value=0.7 Score=50.75 Aligned_cols=114 Identities=14% Similarity=0.023 Sum_probs=77.2
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCe-EEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCcchhhhhh
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 321 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~-pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~~~~d~~~ 321 (525)
|++.+ ..|+++..+|.|.|.. |.. .++.|+++....++--+ ..+.+.++||+++.........+-..+|..+...+
T Consensus 122 ~~v~~-~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i 199 (677)
T 1t9b_A 122 NFVLP-KHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGI 199 (677)
T ss_dssp EEECC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHH
Confidence 45554 9999999999999996 654 34446888876665554 34556799988887543321111134566666678
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc----CCCcEEEEecC
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPR 360 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~----~~~Pv~i~~~~ 360 (525)
++.+-.+ .+...++.++...+..|+.. ..+||+|-++.
T Consensus 200 ~~~~tk~-~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 200 SRSCTKW-NVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp TGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hhhheeE-EEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 8876665 44456778888888877652 35799998874
No 72
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=91.81 E-value=1 Score=48.29 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=69.9
Q ss_pred CeeeccchHHHHHHHHHHHhc-CCCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcch----
Q 009809 244 RCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS---- 316 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~-~G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~---- 316 (525)
|++. ...|+++..+|.|.|. .|.-.++.|+++....++--+. .+.+.++|++++...... .+.+...||..
T Consensus 65 ~~i~-~~~E~~A~~~A~GyAr~tG~~v~~~tsGpG~~N~~~gi~-~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~ 142 (570)
T 2vbf_A 65 KWIG-NANELNASYMADGYARTKKAAAFLTTFGVGELSAINGLA-GSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGD 142 (570)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSC
T ss_pred eEEC-cCcHHHHHHHHHHHHHHhCCeEEEEcCCCCHHHHHHHHH-HHhhhCCCEEEEeCCCCHHHhhccccceeeccccc
Confidence 4444 5999999999999996 5822344458888766666543 566689999888754332 22222344421
Q ss_pred --hhhhhhhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEecCC
Q 009809 317 --FDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 361 (525)
Q Consensus 317 --~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~~~~ 361 (525)
+...+++.+.-+.... .+ +++...+..|+.. ..+||+|-++..
T Consensus 143 ~~~~~~~~~~~tk~~~~v-~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 143 FKHFMKMHEPVTAARTLL-TA-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp CCHHHHHTGGGCSEEEEC-CT-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred hHHHHHHhhhhEEEEEEE-Cc-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 1245677766554433 33 5555555555431 348999987653
No 73
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.51 E-value=0.99 Score=48.29 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=75.8
Q ss_pred CCeeeccchHHHHHHHHHHHhcC-CCe-EEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhh
Q 009809 243 TRCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 318 (525)
Q Consensus 243 ~r~~~~gIaE~~~~~~a~G~A~~-G~~-pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d 318 (525)
=|++.+ ..|+++..+|.|.|.. |.- .++.|+++....++--+ ..+.+.++|++++...... .+..-..+|..+.
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq 123 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQ 123 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCH
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccccH
Confidence 356665 9999999999999997 653 44456888877666554 4456689999888754432 1210124565555
Q ss_pred hhhhhcCCCcEEEccCCHHHHHHHHHHHHh----cCCCcEEEEecCC
Q 009809 319 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 361 (525)
Q Consensus 319 ~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~----~~~~Pv~i~~~~~ 361 (525)
..+++.+-.+. +...+++++...+..|+. ...+||+|-++..
T Consensus 124 ~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 124 MNAAKPYAKAA-FRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhhhee-eecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 67788766653 444555566666666654 2458999987764
No 74
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=91.08 E-value=2.1 Score=45.96 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCC-CEEEEecCCCCCcch---HHHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCeE-EEeechhhHH
Q 009809 207 FAEALIAEAEVDK-DVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFMQ 279 (525)
Q Consensus 207 ~~~~l~~~~~~d~-~~v~~~~D~~~s~~l---~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~p-i~~t~~~F~~ 279 (525)
..++|.+.+++.. +.++.. .|+..+ +.+.+ .++ |++.+ ..|+++.-+|.|.|.. |... ++.|+++...
T Consensus 13 ~a~~lv~~L~~~GV~~vFg~---PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAIIS---PGSRSTPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEEC---CCTTTHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEC---CCCccHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 5566666666543 333332 234333 33333 333 66665 7999999999999985 6543 4445888876
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcE--EEccCCHHH----HHHHHHHHHh---
Q 009809 280 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMV--VMAPSDEAE----LFHMVATAAA--- 348 (525)
Q Consensus 280 ~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~--v~~P~~~~e----~~~~~~~a~~--- 348 (525)
.++--+ ..+.+.++|++++...... .+. ..+|..+...+++.+-.+. +-.|.+..+ +...+..|+.
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 665553 4566789998888744332 222 2456555556777665554 334666333 2224444443
Q ss_pred -cCCCcEEEEecCC
Q 009809 349 -IDDRPSCFRYPRG 361 (525)
Q Consensus 349 -~~~~Pv~i~~~~~ 361 (525)
-..+||+|-++..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 2368999988864
No 75
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.58 E-value=1.9 Score=46.54 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCC-CEEEEecCCCCCcch---HHHHHhCCC-CeeeccchHHHHHHHHHHHhcC-CCe-EEEeechhhH
Q 009809 206 YFAEALIAEAEVDK-DVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFM 278 (525)
Q Consensus 206 a~~~~l~~~~~~d~-~~v~~~~D~~~s~~l---~~~~~~~p~-r~~~~gIaE~~~~~~a~G~A~~-G~~-pi~~t~~~F~ 278 (525)
..++.|.+.+++.. +.++.. .|+..+ +.+.+ .++ |++.+ ..|+++..+|.|.|.. |.. .++.|+++..
T Consensus 32 ~~a~~lv~~L~~~GV~~vFg~---PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~ 106 (604)
T 2x7j_A 32 HYIGSFIDEFALSGITDAVVC---PGSRSTPLAVLCAA-HPDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAA 106 (604)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CCSTTHHHHHHHHH-CTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEC---cCcccHHHHHHHHh-CCCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHH
Confidence 34556666665443 334332 234333 33332 333 56666 9999999999999996 644 3444588887
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcchhhhhhhhcCCCcEEE--ccCCH----HHHHHHHHHHHh--
Q 009809 279 QRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVM--APSDE----AELFHMVATAAA-- 348 (525)
Q Consensus 279 ~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~~d~~~~~~ipg~~v~--~P~~~----~e~~~~~~~a~~-- 348 (525)
..++--+ ..+.+.++|++++...... .+. ..+|......+++.+-.+... .|.+. .++...+..|+.
T Consensus 107 ~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A 183 (604)
T 2x7j_A 107 ANFYPAV-VEAHYSRVPIIVLTADRPHELREV--GAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEA 183 (604)
T ss_dssp HTTHHHH-HHHHHHTCCEEEEEEECCGGGSSS--CCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCC--CCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHh
Confidence 6665553 4455678998888754332 232 235666555677766655433 34430 014444544443
Q ss_pred --cCCCcEEEEecCC
Q 009809 349 --IDDRPSCFRYPRG 361 (525)
Q Consensus 349 --~~~~Pv~i~~~~~ 361 (525)
-..+||+|-++..
T Consensus 184 ~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 184 QKRPMGPVHVNVPLR 198 (604)
T ss_dssp HSSSCCEEEEEEECC
T ss_pred hCCCCCcEEEEcccC
Confidence 2458999988764
No 76
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=87.97 E-value=3.2 Score=44.07 Aligned_cols=112 Identities=14% Similarity=0.051 Sum_probs=65.7
Q ss_pred eccchHHHHHHHHHHHhcC-CCeEE-EeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcch------
Q 009809 247 DVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS------ 316 (525)
Q Consensus 247 ~~gIaE~~~~~~a~G~A~~-G~~pi-~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~------ 316 (525)
-....|+++..+|.|.|.. | .++ +.|+++....++--+ ..+.+.++|++++...... .+.+...||..
T Consensus 47 i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q 124 (552)
T 1ovm_A 47 VGCANELNASYAADGYARCKG-FAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR 124 (552)
T ss_dssp EECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS
T ss_pred EeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH
Confidence 3459999999999999986 6 443 445888876665553 4566789998888754332 11111222111
Q ss_pred hhhhhhhcCCCcEEEccC-C-HHHHHHHHHHHHhcCCCcEEEEecCC
Q 009809 317 FDVTFMACLPNMVVMAPS-D-EAELFHMVATAAAIDDRPSCFRYPRG 361 (525)
Q Consensus 317 ~d~~~~~~ipg~~v~~P~-~-~~e~~~~~~~a~~~~~~Pv~i~~~~~ 361 (525)
+...+++.+--+....+. + +..+...++.|... .+||+|-++..
T Consensus 125 ~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 125 HFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp HHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred HHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 123567766655444443 1 33344444444332 48999987653
No 77
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=87.57 E-value=5.4 Score=42.45 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=68.9
Q ss_pred CeeeccchHHHHHHHHHHHhcC-CCeEEEeechhhHHHHHHHHHHHhhcCCCCeEEEEcCCCC--CCCCCCCCcch----
Q 009809 244 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS---- 316 (525)
Q Consensus 244 r~~~~gIaE~~~~~~a~G~A~~-G~~pi~~t~~~F~~~a~dqi~~~~~~~~~pvvi~~~~~G~--~g~~G~tH~~~---- 316 (525)
+++. ...|+++..+|.|.|.. |.-.++.|+++....++--+ ..+.+.++|++++...... .+.+-..||..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~ 121 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKGMSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGD 121 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSC
T ss_pred eEEc-cCchHHHHHHHHHHHHhhCCcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCcc
Confidence 4555 49999999999999985 73334445888876665554 3455678999888754332 11111222211
Q ss_pred --hhhhhhhcCCCcEEEccCCHH----HHHHHHHHHHhcCCCcEEEEecCC
Q 009809 317 --FDVTFMACLPNMVVMAPSDEA----ELFHMVATAAAIDDRPSCFRYPRG 361 (525)
Q Consensus 317 --~d~~~~~~ipg~~v~~P~~~~----e~~~~~~~a~~~~~~Pv~i~~~~~ 361 (525)
+...+++.+--+. +...+++ .+..++..|+.. .+||+|-++..
T Consensus 122 ~q~~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d 170 (563)
T 2vk8_A 122 FTVFHRMSANISETT-AMITDIATAPAEIDRCIRTTYVT-QRPVYLGLPAN 170 (563)
T ss_dssp SSHHHHHHHTTCSEE-EECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETT
T ss_pred hHHHHHHhhhhEEEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechh
Confidence 2246777766543 3444444 444455555433 48999988775
No 78
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=80.58 E-value=3 Score=42.01 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcC----C-CeEEEeec--hhhHH-HHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCC-----cchhhhh
Q 009809 254 HAVTFAAGLACE----G-LKPFCAIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDVT 320 (525)
Q Consensus 254 ~~~~~a~G~A~~----G-~~pi~~t~--~~F~~-~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH-----~~~~d~~ 320 (525)
..+.+|.|+|++ | -+.+++++ +.|.+ ..++. ++.++..++|+++++.+-++ +..++++ ....+.+
T Consensus 146 ~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a 223 (368)
T 1w85_A 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG-INFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKA 223 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGG
T ss_pred ccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHH-HHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHH
Confidence 344455566654 2 24445554 44543 23444 57788899999888855453 1111111 1122222
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEe
Q 009809 321 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 321 ~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~ 358 (525)
-.-.+|++.| .-.|+.++...++.|++ ..++|++|-.
T Consensus 224 ~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 224 VAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2234566543 55589999999998875 2578988754
No 79
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=78.85 E-value=2.9 Score=42.68 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHHHhcC----C-CeEEEeec--hhhHH-HHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCc--chhhhhh-hhc
Q 009809 256 VTFAAGLACE----G-LKPFCAIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTF-MAC 324 (525)
Q Consensus 256 ~~~a~G~A~~----G-~~pi~~t~--~~F~~-~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~--~~~d~~~-~~~ 324 (525)
+.+|.|+|++ | -+.+++++ +.|.+ ..++. ++.++..++|+++++.+-++ +..+++.. ...|+.- ...
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a 245 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG-FNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPG 245 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHH-HHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHH
Confidence 3455566653 2 23444443 44542 23344 67788889999888865554 11122211 1223221 222
Q ss_pred CCCcEEE--ccCCHHHHHHHHHHHHh---cCCCcEEEEe
Q 009809 325 LPNMVVM--APSDEAELFHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 325 ipg~~v~--~P~~~~e~~~~~~~a~~---~~~~Pv~i~~ 358 (525)
-|+.++ .-.|+.++...++.|++ ..++|++|-.
T Consensus 246 -~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 246 -YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp -GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred -cCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 244433 44578999999988875 2578988754
No 80
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=73.45 E-value=9.1 Score=41.87 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=54.3
Q ss_pred eEEEeechhh--H-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEcc---CCHHH
Q 009809 268 KPFCAIYSSF--M-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAE 338 (525)
Q Consensus 268 ~pi~~t~~~F--~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P---~~~~e 338 (525)
+.++++.++. . ..+++. ++.++..++| ++++.++-++ +-+++++. ..+|+ ..++.+ ||.++.+ .|..+
T Consensus 173 ~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~ 249 (690)
T 3m49_A 173 HYTYAICGDGDLMEGVSAEA-SSLAAHLQLGRLVVLYDSNDI-SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEA 249 (690)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHH
T ss_pred CeEEEEECchhhhhccHHHH-HHHHHHhCCCeEEEEEECCCe-ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHH
Confidence 3455555444 3 245555 5778888987 5656555554 22333322 12222 344543 8888888 78999
Q ss_pred HHHHHHHHHhcCCCcEEEEec
Q 009809 339 LFHMVATAAAIDDRPSCFRYP 359 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~~ 359 (525)
+...++.|....++|++|...
T Consensus 250 l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 250 IAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 999999886536789887543
No 81
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=70.65 E-value=10 Score=41.43 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=52.7
Q ss_pred eEEEeechhhH-H--HHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCC-cchhhh-hhhhcCCCcEEE-ccC---CHH
Q 009809 268 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDV-TFMACLPNMVVM-APS---DEA 337 (525)
Q Consensus 268 ~pi~~t~~~F~-~--~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH-~~~~d~-~~~~~ipg~~v~-~P~---~~~ 337 (525)
+.++++.++.- + ..++. ++.++..++| ++++..+-++ +-++++. +..+|+ ..++. -||.++ .-. |..
T Consensus 149 ~~vv~i~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (680)
T 1gpu_A 149 NYTYVFLGDGCLQEGISSEA-SSLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEA-YGWEVLYVENGNEDLA 225 (680)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-HTCEEEEESCTTTCHH
T ss_pred CeEEEEECCCccchhhHHHH-HHHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHh-cCCeEEEEecCCCCHH
Confidence 44556555442 3 45555 5778888988 7777765554 1122222 112232 24444 378777 333 789
Q ss_pred HHHHHHHHHHhcCCCcEEEEe
Q 009809 338 ELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 338 e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
++...+..|....++|++|..
T Consensus 226 ~l~~al~~A~~~~~~P~lI~~ 246 (680)
T 1gpu_A 226 GIAKAIAQAKLSKDKPTLIKM 246 (680)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEE
Confidence 999999988754578988754
No 82
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=69.28 E-value=6.1 Score=39.71 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=55.7
Q ss_pred HHHHHHHHhcC----C-CeEEEeech--hhHH-HHHHHHHHHhhcCCCCeEEEEcCCCCC-CCCCCCCcchhhhhh-hhc
Q 009809 255 AVTFAAGLACE----G-LKPFCAIYS--SFMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLV-GADGPTHCGSFDVTF-MAC 324 (525)
Q Consensus 255 ~~~~a~G~A~~----G-~~pi~~t~~--~F~~-~a~dqi~~~~~~~~~pvvi~~~~~G~~-g~~G~tH~~~~d~~~-~~~ 324 (525)
.+.+|+|+|++ | .+.++++++ .+.+ ..+|. ++.++..++|+++++.+-++. +..........++.- ...
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ea-ln~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g 223 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA-YNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF 223 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHH-HHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHH-HHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCC
Confidence 34555666653 2 344555543 3332 23444 578888999998888554531 110000111112211 113
Q ss_pred CCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEe
Q 009809 325 LPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 325 ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~ 358 (525)
+|++.| .=.|+.++...++.|++ ..++|++|-.
T Consensus 224 ~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 224 IPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp SCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 566543 55689999999988864 3578988744
No 83
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=68.74 E-value=12 Score=37.49 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=53.9
Q ss_pred HHHHHHHhc----CC-CeEEEeec--hhhHHH-HHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCC-----cchhhhhhh
Q 009809 256 VTFAAGLAC----EG-LKPFCAIY--SSFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDVTFM 322 (525)
Q Consensus 256 ~~~a~G~A~----~G-~~pi~~t~--~~F~~~-a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH-----~~~~d~~~~ 322 (525)
+++|.|+|+ .+ -++++++. +.|..- .+|. ++.++..++|+++++.+-++ +..+++. ....+++-.
T Consensus 150 l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~a 227 (367)
T 1umd_A 150 VPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG-INFAAVQGAPAVFIAENNFY-AISVDYRHQTHSPTIADKAHA 227 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHTTCSEEEEEEECSE-ETTEEHHHHCSSSCSGGGGGG
T ss_pred hhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH-HHHHHHhCcCEEEEEecCCe-eeccChhhccCCCCHHHHHHH
Confidence 444445444 33 23444444 445332 4444 56778899998888755553 2222211 112222222
Q ss_pred hcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEEe
Q 009809 323 ACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 358 (525)
Q Consensus 323 ~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~~ 358 (525)
-.+|.+. +.-.|+.++...+..|++ ..++|++|-.
T Consensus 228 ~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 228 FGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp TTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2455554 466788888777777754 2478988754
No 84
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=68.57 E-value=17 Score=39.71 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=54.2
Q ss_pred eEEEeechhhH-H--HHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCcc-hhhh-hhhhcCCCcEEE-cc---CCHH
Q 009809 268 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVM-AP---SDEA 337 (525)
Q Consensus 268 ~pi~~t~~~F~-~--~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~~-~~d~-~~~~~ipg~~v~-~P---~~~~ 337 (525)
+.++++.++.- + ..+|. ++.++..++| ++++.+.-++ +-+|++... .+|+ ..++. -||.++ .- .|+.
T Consensus 149 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEA-LSLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHH-HHHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 44566555442 3 44565 5678888987 7776665554 222332211 2333 34555 488887 43 7899
Q ss_pred HHHHHHHHHHhcCCCcEEEEe
Q 009809 338 ELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 338 e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
++...+..|....++|++|..
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~ 246 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQ 246 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 999999988654678988755
No 85
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=67.90 E-value=6.8 Score=40.01 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=53.7
Q ss_pred HHHHHHHhcC----C-CeEEEeec--hhhHH-HHHHHHHHHhhcCCCCeEEEEcCCCCCCCCCCCCc---chhhh---hh
Q 009809 256 VTFAAGLACE----G-LKPFCAIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC---GSFDV---TF 321 (525)
Q Consensus 256 ~~~a~G~A~~----G-~~pi~~t~--~~F~~-~a~dqi~~~~~~~~~pvvi~~~~~G~~g~~G~tH~---~~~d~---~~ 321 (525)
+.+|.|+|++ | -+.+++++ +.|.+ ..++. ++.++..++|+++++.+-++ +..++++. ...|+ +-
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~ 264 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA-LTFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGV 264 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH-HHHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHH
Confidence 3445555553 2 24444544 33432 23444 57777889998888755553 11111111 12232 11
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhc---CCCcEEEEe
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 358 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~---~~~Pv~i~~ 358 (525)
.-.+|++. +.-.|+.++...++.|++. .++|++|-.
T Consensus 265 a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 265 GCGIASLR-VDGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp HTTCEEEE-EETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HcCCeEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 12344443 3455788999888888752 578988754
No 86
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=67.86 E-value=13 Score=40.58 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=53.0
Q ss_pred eEEEeechhhH-H--HHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCC-cchhhh-hhhhcCCCcEEE---ccCCHHH
Q 009809 268 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDV-TFMACLPNMVVM---APSDEAE 338 (525)
Q Consensus 268 ~pi~~t~~~F~-~--~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH-~~~~d~-~~~~~ipg~~v~---~P~~~~e 338 (525)
+.++++.++.- + ..++. ++.++..++| ++++..+.++ +-++++. +..+|+ ..++. -||.++ .=.|+.+
T Consensus 147 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 223 (669)
T 2r8o_A 147 HYTYAFMGDGCMMEGISHEV-CSLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEA-YGWHVIRDIDGHDAAS 223 (669)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-TTCEEEEEEETTCHHH
T ss_pred CeEEEEECHhHhcchHHHHH-HHHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHH-CCCeEEeEECCCCHHH
Confidence 34555555442 3 45565 5778888988 6766665554 1122222 112232 34555 477776 2347999
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q 009809 339 LFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+...+..|....++|++|..
T Consensus 224 l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 224 IKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp HHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 99999988754578988754
No 87
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=66.93 E-value=9.6 Score=30.77 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=46.9
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCCCCCCHHHH
Q 009809 388 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 388 g~dv~iva~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~~~gglg~~ 457 (525)
..+|+|++.++ ....|..|.+.|++.|+....+++..- |--.+.+.+.. ..+=+.|++.....||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEEEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeCHHHH
Confidence 45788888884 778899999999999999999998531 11123333332 22335677776667888644
No 88
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=65.70 E-value=12 Score=40.85 Aligned_cols=88 Identities=13% Similarity=0.056 Sum_probs=50.7
Q ss_pred eEEEeechhh--H-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCcc-hhhh-hhhhcCCCcEEEcc---CCHHH
Q 009809 268 KPFCAIYSSF--M-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAE 338 (525)
Q Consensus 268 ~pi~~t~~~F--~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~~-~~d~-~~~~~ipg~~v~~P---~~~~e 338 (525)
+.++++.++. . ...++. ++.++..++| ++++.++-++ +-+|++... .+|+ ..++.+ ||.++.+ .|..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSHEA-CSLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHHHH-HHHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 4566665444 3 244555 5778888998 5566655553 122222211 1222 345553 8887733 47899
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q 009809 339 LFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+...++.|....++|++|..
T Consensus 226 l~~al~~A~~~~~~P~lI~~ 245 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICC 245 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 99999988653578988754
No 89
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=62.94 E-value=24 Score=38.64 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=53.4
Q ss_pred eEEEeechhh--H-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEcc---CCHHH
Q 009809 268 KPFCAIYSSF--M-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAE 338 (525)
Q Consensus 268 ~pi~~t~~~F--~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P---~~~~e 338 (525)
+.+++..++. . -..+|. ++.++..++| ++++.+.-++. -+|++.. ..+|+ ..++.+ ||.++.- .|..+
T Consensus 169 ~~v~~~~GDG~l~eG~~~EA-l~~A~~~~L~nli~i~d~N~~s-i~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~a 245 (700)
T 3rim_A 169 HYIYVIASDGDIEEGVTSEA-SSLAAVQQLGNLIVFYDRNQIS-IEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVG 245 (700)
T ss_dssp CCEEEEEEHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHH
T ss_pred CeEEEEECCcccccChHHHH-HHHHHHcCCCcEEEEEECCCcc-cccchhhccchhHHHHHHHc-CCeEEEECCCCCHHH
Confidence 3455555444 3 244565 5788899997 77777655541 1222211 12222 234443 7777654 58999
Q ss_pred HHHHHHHHHhcCCCcEEEEec
Q 009809 339 LFHMVATAAAIDDRPSCFRYP 359 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~~ 359 (525)
+...+..|....++|++|...
T Consensus 246 l~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 246 IEEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEE
Confidence 999999886546889888653
No 90
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=59.11 E-value=14 Score=31.26 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=44.8
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHH
Q 009809 389 ERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFG 455 (525)
Q Consensus 389 ~dv~iva~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg 455 (525)
.+|+|.++| .....|..|.+.|++.|++...+++.. .|--.+.+.+... .+=++|+++....||+.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d 105 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCD 105 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEESHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEEEEChH
Confidence 467888887 677889999999999999999999864 2211233333322 23356777766678885
No 91
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=58.56 E-value=34 Score=37.24 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=52.9
Q ss_pred eEEEeechhhH-H--HHHHHHHHHhhcCCC-CeEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEcc-C---CHH
Q 009809 268 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP-S---DEA 337 (525)
Q Consensus 268 ~pi~~t~~~F~-~--~a~dqi~~~~~~~~~-pvvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P-~---~~~ 337 (525)
+.++++.++.- + ..++. ++.++..++ |++++..+.++. -++++.. ..+|+ ..++. -||.++.+ . |..
T Consensus 160 ~~v~~i~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEA-CSLAGHWGLGKLIAFYDDNHIS-IDGDTEIAFTEDVSTRFEA-LGWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHH-HHHHHHhCCCcEEEEEECCCcc-CCCChhhhcChhHHHHHHh-CCCEEEEEecCCCCHH
Confidence 44555554442 2 45565 577888898 577777665541 1122211 12232 34555 38888733 2 788
Q ss_pred HHHHHHHHHHhcCCCcEEEEec
Q 009809 338 ELFHMVATAAAIDDRPSCFRYP 359 (525)
Q Consensus 338 e~~~~~~~a~~~~~~Pv~i~~~ 359 (525)
++...+..|....++|++|...
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEe
Confidence 9999999886545789887553
No 92
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=58.30 E-value=22 Score=38.94 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=52.8
Q ss_pred eEEEeechhh--H-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEcc---CCHHH
Q 009809 268 KPFCAIYSSF--M-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAE 338 (525)
Q Consensus 268 ~pi~~t~~~F--~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P---~~~~e 338 (525)
+.++++.++. . ...++. ++.++..++| ++++.++-++ +-+++++. ...|+ ..++.+ ||.++.| .|..+
T Consensus 188 ~~vv~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 264 (711)
T 3uk1_A 188 HHTYVFLGDGCLMEGISHEA-CSLAGTLKLNKLIALYDDNGI-SIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDA 264 (711)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHH-HHHHHHhCCCcEEEEEECCCc-ccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHH
Confidence 4555655444 3 245555 5778889998 6666665554 12222221 12222 345553 7777664 58999
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q 009809 339 LFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+...++.|.. .++|++|..
T Consensus 265 l~~Al~~A~~-~~~P~lI~v 283 (711)
T 3uk1_A 265 IDAAIAKAKR-SDKPSLICC 283 (711)
T ss_dssp HHHHHHHHTT-CSSCEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999998854 688988754
No 93
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=57.93 E-value=18 Score=29.34 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=45.9
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-ccCCeEEEEcCCCCCCHHH
Q 009809 388 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGS 456 (525)
Q Consensus 388 g~dv~iva~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~~~gglg~ 456 (525)
...|+|.+-| +....|..|.+.|++.|++...+++.. .|--.+.+.+.. ..+=+.|.++....||+..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~ 87 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDI 87 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEEEecHHH
Confidence 4568888876 456889999999999999999999864 221112333332 2234677787766788864
No 94
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=57.23 E-value=24 Score=38.05 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=20.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 332 APSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 332 ~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
...|..++...++.|.. .++|++|..
T Consensus 260 dG~d~~~l~~al~~A~~-~~~P~lI~v 285 (629)
T 2o1x_A 260 DGHNVQELVWLLERLVD-LDGPTILHI 285 (629)
T ss_dssp ESSCHHHHHHHHHHHTT-SSSEEEEEE
T ss_pred CCcCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 55689999999999864 578988754
No 95
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=56.54 E-value=27 Score=37.83 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=52.5
Q ss_pred eEEEeechhhH-H--HHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCcc-hhhh-hhhhcCCCcEEEcc---CCHHH
Q 009809 268 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAE 338 (525)
Q Consensus 268 ~pi~~t~~~F~-~--~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~~-~~d~-~~~~~ipg~~v~~P---~~~~e 338 (525)
+.++++.++.- + ..++. ++.++..++| ++++..+.++. -.+++... ..|+ ..++. -||.++.+ .|..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEA-ASLAGHWGLSKLIVFWDDNRIS-IDGPTDLAFTEDVLARYRA-YGWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECCEE-TTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHH-HHHHHHcCCCeEEEEEECCCcc-cccccccccCccHHHHHHh-CCCeEEEEeCCCCHHH
Confidence 45556554442 3 45555 5778888988 77777665541 11222111 2232 34555 48887733 37999
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q 009809 339 LFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+...+..|.. .++|++|..
T Consensus 228 l~~al~~a~~-~~~P~lI~~ 246 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAV 246 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEE
Confidence 9999998866 678988754
No 96
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=56.09 E-value=26 Score=32.85 Aligned_cols=64 Identities=20% Similarity=0.059 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCc--------HHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHH
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKPLD--------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d--------~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~ 464 (525)
..+..+++.+++.|++++++++..+..++ .+.+.+.+..+..+|++=--+.+++...+..++-.
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 44455667777789999999997753111 34555666677777776655567777777776654
No 97
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=55.89 E-value=30 Score=37.27 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=53.0
Q ss_pred HHHHHHHHhcC----C--CeEEEeec--hhhH-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc--chhhh-hh
Q 009809 255 AVTFAAGLACE----G--LKPFCAIY--SSFM-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GSFDV-TF 321 (525)
Q Consensus 255 ~~~~a~G~A~~----G--~~pi~~t~--~~F~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~--~~~d~-~~ 321 (525)
.+++|.|+|++ + -+.++++. +.|. ...+|. ++.++..++| ++++..+.++ +-++++.. ...++ ..
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Ea-l~~A~~~~l~~livi~nnN~~-~i~~~~~~~~~~~~~~~~ 203 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEA-MAFASIYKLDNLVAILDINRL-GQSDPAPLQHQMDIYQKR 203 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCTTEEEEEEECSB-CSSSBCTTTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHH-HHHHHHcCCCcEEEEEECCCC-CCcCCcccccChHHHHHH
Confidence 35556666654 2 14455554 4443 245555 5778888998 4445554443 12222222 22332 34
Q ss_pred hhcCCCcEEEcc--CCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 322 MACLPNMVVMAP--SDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 322 ~~~ipg~~v~~P--~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
++.+ ||.++.- .|..++...+..+ .++|++|..
T Consensus 204 ~~a~-G~~~~~VdG~d~~~l~~al~~~---~~~P~lI~v 238 (616)
T 3mos_A 204 CEAF-GWHAIIVDGHSVEELCKAFGQA---KHQPTAIIA 238 (616)
T ss_dssp HHHT-TCEEEEEETTCHHHHHHHHHSC---CSSCEEEEE
T ss_pred HHHc-CCeEEEEcCCCHHHHHHHHHhc---CCCCEEEEE
Confidence 5553 7776622 3677877777544 478988754
No 98
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=55.83 E-value=14 Score=29.72 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=45.2
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHH
Q 009809 388 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFG 455 (525)
Q Consensus 388 g~dv~iva~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg 455 (525)
..+++|.+.| .....|..|...|++.|++...+++.. .|--.+.+.+... .+=++|+++....||+.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d 85 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDLVGGLD 85 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSEEECHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEcCHH
Confidence 4568899888 567789999999999999999999864 2211223333332 22346667666678875
No 99
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=55.31 E-value=28 Score=37.55 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=51.6
Q ss_pred eEEEeechhh--H-HHHHHHHHHHhhcCCCC-eEEEEcCCCCCCCCCCCCc-chhhh-hhhhcCCCcEEEccC---CHHH
Q 009809 268 KPFCAIYSSF--M-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS---DEAE 338 (525)
Q Consensus 268 ~pi~~t~~~F--~-~~a~dqi~~~~~~~~~p-vvi~~~~~G~~g~~G~tH~-~~~d~-~~~~~ipg~~v~~P~---~~~e 338 (525)
+.+++..++. . ...++. ++.++..++| ++++.++-++ +-++++.. ..+|+ ..++.+ ||.++ +. |..+
T Consensus 144 ~~v~~v~GDG~~~eG~~~Ea-l~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~-~vdGhd~~~ 219 (632)
T 3l84_A 144 HKIYCLCGDGDLQEGISYEA-CSLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNENVKMRFEAQ-GFEVL-SINGHDYEE 219 (632)
T ss_dssp CCEEEEEEHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEE-EEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHH-HHHHHHcCCCcEEEEEECCCc-ccccchhhhcChhHHHHHHHc-CCeEE-EEeeCCHHH
Confidence 4455555444 3 245555 5778888987 6666665554 11222221 11222 345553 88877 44 7899
Q ss_pred HHHHHHHHHhcCCCcEEEEe
Q 009809 339 LFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 339 ~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+...++.|.. .++|++|..
T Consensus 220 l~~al~~A~~-~~~P~lI~v 238 (632)
T 3l84_A 220 INKALEQAKK-STKPCLIIA 238 (632)
T ss_dssp HHHHHHHHHT-CSSCEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999998865 688988754
No 100
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=54.74 E-value=36 Score=26.55 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=45.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-----cCCeEEEEcCCC-CCCH-HHHHHHH
Q 009809 389 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGS-IGGF-GSHVVQF 461 (525)
Q Consensus 389 ~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvE~~~-~ggl-g~~v~~~ 461 (525)
+.|+|.+. +....|..|.+.|++.||....+++.. |.+...++.+ .+=++|++.++. ..|. ..+|.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 35666654 555778889899999999999999853 3444333322 123667776654 3333 3466666
Q ss_pred HHHc
Q 009809 462 LAQD 465 (525)
Q Consensus 462 l~~~ 465 (525)
|.+-
T Consensus 79 L~el 82 (92)
T 2lqo_A 79 LVKI 82 (92)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 101
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=52.12 E-value=43 Score=30.79 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHH
Q 009809 402 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 402 ~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l 462 (525)
.+..+++.|++.|.+++++++.. .+|.+...+.+..+..||+.=--+-+++.+.+..++
T Consensus 48 L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~i 106 (218)
T 3rpe_A 48 LTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYI 106 (218)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHH
Confidence 34456677788899999999974 678877777788888877765544566665555543
No 102
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=50.68 E-value=41 Score=36.13 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=21.1
Q ss_pred EccCCHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 331 MAPSDEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 331 ~~P~~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
+...|..++...++.|.. .++|++|..
T Consensus 254 vdG~d~~~l~~al~~A~~-~~gP~lI~v 280 (621)
T 2o1s_A 254 VDGHDVLGLITTLKNMRD-LKGPQFLHI 280 (621)
T ss_dssp EETTCHHHHHHHHHHHHH-SCSEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 355689999999999865 578988754
No 103
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=49.92 E-value=30 Score=30.82 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=40.4
Q ss_pred hHHHHHHHHHH-HHhCCCcEEEEecccccc--------C--cHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHH
Q 009809 399 AVQSCLAASAL-LESNGLRLTVADARFCKP--------L--DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 463 (525)
Q Consensus 399 ~~~~a~~Aa~~-L~~~Gi~v~vi~~~~l~P--------~--d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~ 463 (525)
+-..+..+++. |+++|.+++++++..+.. . +.+.+.+.+..+..+|+.=--+.+++...+..++.
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD 93 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHH
Confidence 34555556677 888899999999865421 1 23344445556666666554445667666666554
No 104
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=46.62 E-value=50 Score=37.37 Aligned_cols=108 Identities=9% Similarity=-0.085 Sum_probs=58.3
Q ss_pred eccchHHHHHHHHHHHhcC----C-----C-eEEEeec--hhh-H-HHHHHHHHHHhhcCCCC---eEEEEcCCCC--CC
Q 009809 247 DVGIAEQHAVTFAAGLACE----G-----L-KPFCAIY--SSF-M-QRAYDQVVHDVDLQKLP---VRFAMDRAGL--VG 307 (525)
Q Consensus 247 ~~gIaE~~~~~~a~G~A~~----G-----~-~pi~~t~--~~F-~-~~a~dqi~~~~~~~~~p---vvi~~~~~G~--~g 307 (525)
+.+..++. +.+|.|+|++ | . ..+++++ +.| . ...+|. ++.++..++| +++++.+-++ ..
T Consensus 319 ~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ea-ln~A~~~~lp~gg~I~vv~nN~~~ist 396 (933)
T 2jgd_A 319 NPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQET-LNMSKARGYEVGGTVRIVINNQVGFTT 396 (933)
T ss_dssp CCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHH-HHHTTSTTTCCSCCEEEEEECC-----
T ss_pred cCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHH-HHHhhccCCCCCceEEEEEeCCccccC
Confidence 33444432 6667777764 2 1 2333334 444 2 355665 6888999999 7776644343 22
Q ss_pred -CCC--CCCcchhhhhhhhcCCCcEEEccCCHHHHHHHHHHHHh---cCCCcEEEE
Q 009809 308 -ADG--PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFR 357 (525)
Q Consensus 308 -~~G--~tH~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~~a~~---~~~~Pv~i~ 357 (525)
..+ .+.....+.+-.-.+|.+.| .-.|+.++...++.|.+ ...+|++|-
T Consensus 397 ~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe 451 (933)
T 2jgd_A 397 SNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFID 451 (933)
T ss_dssp ----------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 211 11112334333334565544 77889999998888864 246797764
No 105
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=45.49 E-value=45 Score=30.78 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHhC-CCcEEEEecccccc---------------------CcHHHHHHHhccCCeEEEEcCCCCCCHHH
Q 009809 399 AVQSCLAASALLESN-GLRLTVADARFCKP---------------------LDHALIRSLAKSHEVLITVEEGSIGGFGS 456 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P---------------------~d~~~i~~~~~~~~~vvvvE~~~~gglg~ 456 (525)
+...+..+++.|++. |.+++++++..+.+ -+.+.+.+.+..+..||+.=--+.+++.+
T Consensus 17 T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~ 96 (242)
T 1sqs_A 17 TLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSV 96 (242)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCH
Confidence 344555567778777 99999999875421 23345555566777777665545677777
Q ss_pred HHHHHHHH
Q 009809 457 HVVQFLAQ 464 (525)
Q Consensus 457 ~v~~~l~~ 464 (525)
.+..++-.
T Consensus 97 ~lK~~iDr 104 (242)
T 1sqs_A 97 DTKNFIER 104 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 106
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=42.55 E-value=52 Score=29.63 Aligned_cols=60 Identities=17% Similarity=0.022 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHH
Q 009809 402 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 463 (525)
Q Consensus 402 ~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~ 463 (525)
.+..+++.+++.|.+++++++.. +.|.+.+.+.+..+..||+.=--+.+++.+.+..++-
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 34455667777799999999874 5677777777878887777665555777777766554
No 107
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=41.29 E-value=39 Score=32.42 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccc-------Cc--HHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHH
Q 009809 401 QSCLAASALLESNGLRLTVADARFCKP-------LD--HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 401 ~~a~~Aa~~L~~~Gi~v~vi~~~~l~P-------~d--~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~ 464 (525)
..+..+++.+++.|++++++++.-+.. .+ .+.+.+.+..+..+|++=--+.+++...+..++-.
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDr 148 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQIDH 148 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHHHH
Confidence 455556777877899999999987531 12 34455666667777766544456666666665543
No 108
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=41.13 E-value=36 Score=27.95 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCc---EEEEeccccccCcHHH---HHHHh-ccCCeEEEEcCCCCCCHHH
Q 009809 388 GERVALLGYGT----AVQSCLAASALLESNGLR---LTVADARFCKPLDHAL---IRSLA-KSHEVLITVEEGSIGGFGS 456 (525)
Q Consensus 388 g~dv~iva~G~----~~~~a~~Aa~~L~~~Gi~---v~vi~~~~l~P~d~~~---i~~~~-~~~~~vvvvE~~~~gglg~ 456 (525)
..+|+|++.|+ ....|..|.+.|++.|+. ...+++.. +.+. +.+.. ..+=+.|.+.....||+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~ 90 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEFIGGCDV 90 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEEEecHHH
Confidence 45788888884 678899999999988998 88898752 3332 32222 2234667777666788864
Q ss_pred H
Q 009809 457 H 457 (525)
Q Consensus 457 ~ 457 (525)
.
T Consensus 91 l 91 (121)
T 3gx8_A 91 I 91 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=39.92 E-value=48 Score=27.11 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCc-EEEEeccccccCcHHHHHHHh-ccCCeEEEEcCCCCCCHHHH
Q 009809 388 GERVALLGYGT----AVQSCLAASALLESNGLR-LTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 388 g~dv~iva~G~----~~~~a~~Aa~~L~~~Gi~-v~vi~~~~l~P~d~~~i~~~~-~~~~~vvvvE~~~~gglg~~ 457 (525)
..+|+|++.++ ....|..|.+.|++.|+. ...+++.. .|--.+.+.+.. ..+=+.|+++....||+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~-d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~l 93 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDIL 93 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC-CHHHHHHHHHHhCCCCcCeEEECCEEEeChHHH
Confidence 45799999883 778899999999999995 99999853 111112333332 23346777877667888633
No 110
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=39.58 E-value=52 Score=29.41 Aligned_cols=63 Identities=3% Similarity=0.053 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCcH----------HHHHHHhccCCeEEEEcCCCCCCHHHHHHHHH
Q 009809 400 VQSCLAASALLESNGLRLTVADARFCKPLDH----------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 400 ~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~----------~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l 462 (525)
...+.+++..+.+.|.+++++++.-|-.|+. +.+.+.++.+..+|++---+.+++...+.+.+
T Consensus 18 ~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~i 90 (190)
T 3u7r_A 18 NHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAI 90 (190)
T ss_dssp HHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHHHHH
Confidence 3444455555556799999999876522322 34566677777777776555565655555443
No 111
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=36.62 E-value=1.8e+02 Score=24.05 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=64.1
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCc--HHHHHHHhcc----CCeEEEEcCCCCCCHHHHHHHHH
Q 009809 390 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLD--HALIRSLAKS----HEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 390 dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d--~~~i~~~~~~----~~~vvvvE~~~~gglg~~v~~~l 462 (525)
.++|++-|. ......++++.+-.+ -.+..++++-=...+ .+.+.+.++. .+.+|.+|-++...++..+..
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~~-- 82 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTE-- 82 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHHH--
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHH--
Confidence 578999999 778888899887655 677788864322111 1334444433 346677776444444443322
Q ss_pred HHcCCCCCCcceEEeecCCccCCCCChHHHH--HHcCCCHHHHHHHHHHHhhcc
Q 009809 463 AQDGLLDGTVKWRPLVLPDRYIDHGSPADQL--AQAGLTPSHIAATVFNILGQT 514 (525)
Q Consensus 463 ~~~~~~~~~~~~~~ig~~d~~~~~g~~~~l~--~~~gl~~~~I~~~i~~~l~~~ 514 (525)
+. ..++..+...+-+. .-+.. ..++.+-+.|++.++.+.+.+
T Consensus 83 -~~-----~~~v~vI~gvnlpm----llea~~~~~~~~~l~el~~~~~~~~~~~ 126 (130)
T 3gx1_A 83 -EL-----GIRTKTVTMVSTPV----VLEAMRKASLGRGLEDIYQSCEQLFENK 126 (130)
T ss_dssp -HH-----CCCEEEECSCCHHH----HHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -hc-----CCCEEEEeCCCHHH----HHHHHHHhhcCCCHHHHHHHHHHHHHHh
Confidence 11 13455555433211 11221 235568899999998887664
No 112
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=36.26 E-value=95 Score=31.37 Aligned_cols=69 Identities=13% Similarity=-0.059 Sum_probs=45.9
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHH
Q 009809 391 VALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVV 459 (525)
Q Consensus 391 v~iva~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~ 459 (525)
-++|.|+||. ..|...++.|+++|+++.++++..+..-+...+.+-+.+++.+++-=.-+.+++-..+.
T Consensus 267 ~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 267 KVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHH
T ss_pred ceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHH
Confidence 4566677765 34555567788899999999888877777777766666777777543333455544443
No 113
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=35.02 E-value=24 Score=29.84 Aligned_cols=106 Identities=10% Similarity=0.077 Sum_probs=60.2
Q ss_pred EEEEEechhHH-HHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCC
Q 009809 391 VALLGYGTAVQ-SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 469 (525)
Q Consensus 391 v~iva~G~~~~-~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~ 469 (525)
+.+-+.|...+ .--.|.+.|++.||++.- ..-++++.+. +.....||+++++. ..+... ..
T Consensus 32 ~~v~SAGt~~~~~~p~a~~~l~~~Gid~s~---~~sr~l~~~~----~~~~D~Ii~m~~~~---------~~~~p~--~~ 93 (139)
T 1jl3_A 32 WKVYSAGIEAHGLNPNAVKAMKEVGIDISN---QTSDIIDSDI----LNNADLVVTLCGDA---------ADKCPM--TP 93 (139)
T ss_dssp EEEEEEESSCCCCCHHHHHHHHHTTCCCTT---CCCCBCCHHH----HTTCSEEEECSHHH---------HHHCCC--CC
T ss_pred EEEEcCcCCCCCCCHHHHHHHHHcCCCccc---CccCcCCHHH----hhcCCEEEEeCchH---------HhhCCC--CC
Confidence 44555554432 111344556777887532 2235555543 34567888886642 111111 11
Q ss_pred CCcceEEeecCCccCCCCChHHHHHHcCCCHHHHHHHHHHHhhcc
Q 009809 470 GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 514 (525)
Q Consensus 470 ~~~~~~~ig~~d~~~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~ 514 (525)
.........++|-|...|+.++.++.|.-..+.|.+++..++.+.
T Consensus 94 ~~~~~~~~~i~DP~~~~g~~~e~~~~f~~~~~~I~~~i~~ll~~~ 138 (139)
T 1jl3_A 94 PHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETG 138 (139)
T ss_dssp TTSEEEECCCCCGGGCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEeccCCCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122334557777665447777777778778899999998888654
No 114
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=33.97 E-value=82 Score=23.53 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecccccc-CcHH---HHHHHhc-c-----CCeEEEE-cCCCCCCHHH
Q 009809 399 AVQSCLAASALLESNGLRLTVADARFCKP-LDHA---LIRSLAK-S-----HEVLITV-EEGSIGGFGS 456 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P-~d~~---~i~~~~~-~-----~~~vvvv-E~~~~gglg~ 456 (525)
....|..|.+.|++.|++.+.+++..... -+.+ .+.+... . +=+.|++ +....||+..
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~ 81 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ 81 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHH
Confidence 55788889999999999999999964321 2333 3443332 2 2356777 4444788764
No 115
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=33.96 E-value=46 Score=25.49 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=40.9
Q ss_pred cEEEEEechhHHHH------HHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc---cCCeEEEEcCCCCCCHHHH
Q 009809 390 RVALLGYGTAVQSC------LAASALLESNGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 390 dv~iva~G~~~~~a------~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~---~~~~vvvvE~~~~gglg~~ 457 (525)
+++|.++. ....+ ..|.+.|++.|+....+++.. .|-..+.+.+... .+=+.|+++....||+...
T Consensus 3 ~v~ly~~~-~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~-~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l 77 (93)
T 1t1v_A 3 GLRVYSTS-VTGSREIKSQQSEVTRILDGKRIQYQLVDISQ-DNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELF 77 (93)
T ss_dssp CEEEEECS-SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTS-CHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred CEEEEEcC-CCCCchhhHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHH
Confidence 45555543 33344 778888999999999999864 2222233444433 1336777887767888643
No 116
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=33.50 E-value=2.4e+02 Score=24.78 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=39.7
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-----ccCCeEEEEcCCCCCCHHHHHHH
Q 009809 389 ERVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-----KSHEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 389 ~dv~iva~G~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-----~~~~~vvvvE~~~~gglg~~v~~ 460 (525)
+.|.||.-|.. ...+.+|++.|++-|+..+ +.+.+..-.|.+ +.+++ +..+ ++++=.+..+.|.+.|+.
T Consensus 8 ~~V~IimgS~SD~~v~~~a~~~L~~~gi~~e-v~V~SaHR~p~~-~~~~~~~a~~~g~~-ViIa~AG~aa~LpgvvA~ 82 (174)
T 3lp6_A 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAE-VRVVSAHRTPEA-MFSYARGAAARGLE-VIIAGAGGAAHLPGMVAA 82 (174)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTCHHH-HHHHHHHHHHHTCC-EEEEEEESSCCHHHHHHH
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEE-EEEECCCCCHHH-HHHHHHHHHhCCCC-EEEEecCchhhhHHHHHh
Confidence 35666654433 6788899999998888644 233334334433 23332 2344 555555556777777654
No 117
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=32.78 E-value=49 Score=27.88 Aligned_cols=49 Identities=10% Similarity=0.065 Sum_probs=35.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEecccccc-CcHHHHHHH
Q 009809 388 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP-LDHALIRSL 436 (525)
Q Consensus 388 g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P-~d~~~i~~~ 436 (525)
..++++||-|+.+...+..++.|.+.|.++.++..++-.- +-.+.++++
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~l 67 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEKA 67 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHTT
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHHH
Confidence 4679999999999999988888888888888884344322 234555543
No 118
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=32.68 E-value=76 Score=27.74 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHhC------CCcEEEEeccc--cccCc--------------------HHHHHHHhccCCeEEEEcCCC
Q 009809 399 AVQSCLAASALLESN------GLRLTVADARF--CKPLD--------------------HALIRSLAKSHEVLITVEEGS 450 (525)
Q Consensus 399 ~~~~a~~Aa~~L~~~------Gi~v~vi~~~~--l~P~d--------------------~~~i~~~~~~~~~vvvvE~~~ 450 (525)
+...+...++.|++. |.+++++++.. +.|++ .+.+.+.+..+..+|+.=--+
T Consensus 16 t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y 95 (191)
T 1t0i_A 16 CPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQY 95 (191)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECB
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceE
Confidence 334455556677765 78999999865 32221 123445555666666665545
Q ss_pred CCCHHHHHHHHHHH
Q 009809 451 IGGFGSHVVQFLAQ 464 (525)
Q Consensus 451 ~gglg~~v~~~l~~ 464 (525)
.+++.+.+..++-.
T Consensus 96 ~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 96 NWGYPAALKNAIDR 109 (191)
T ss_dssp TTBCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH
Confidence 57777777666654
No 119
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.58 E-value=58 Score=25.52 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=42.6
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHH
Q 009809 389 ERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 389 ~dv~iva~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~ 457 (525)
..++|.+.| +....|..|...|++.|++...+++.. .|--.+.+.+... .+=+.|+++....||+...
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~ 89 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIV 89 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC-CHHHHHHHHHHHCCCCCCeEEECCEEEeChHHH
Confidence 357777766 456788888888988899999999864 2211123333332 2224566665557888643
No 120
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=32.47 E-value=64 Score=31.58 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred cccc-CceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEEcc
Q 009809 123 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTE 165 (525)
Q Consensus 123 ~~~~-g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~t~ 165 (525)
+... ||.++.+ .|..+...++..|.+ .++|++|...+.
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~~ 176 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPKR 176 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGG
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEchH
Confidence 4444 8888877 888888899988887 478999876643
No 121
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.89 E-value=50 Score=29.04 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEeccccccCcHH-------------HHHHHhccCCeEEEEcCCCCCCHHHHHHHHHH
Q 009809 397 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHA-------------LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 463 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~-------------~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~ 463 (525)
|.+-..+...++.|++.|++++++++... +.+.- ...+.+..+..||+.=--+.+++...+..++.
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld 95 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLD 95 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHH
Confidence 33445555667777778999999999764 21110 11233445666666554445677766666654
Q ss_pred H
Q 009809 464 Q 464 (525)
Q Consensus 464 ~ 464 (525)
.
T Consensus 96 ~ 96 (200)
T 2a5l_A 96 G 96 (200)
T ss_dssp T
T ss_pred H
Confidence 3
No 122
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=31.61 E-value=2.6e+02 Score=24.32 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=41.5
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-----cCCeEEEEcCCCCCCHHHHHHH
Q 009809 389 ERVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 389 ~dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvE~~~~gglg~~v~~ 460 (525)
..|.||.-|. -...+.+|++.|++-|+..++ .+.+..-.|.+ +.++.+ ..+ ++++=.+..+.|...++.
T Consensus 4 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~-~~~~~~~a~~~g~~-ViIa~AG~aa~LpgvvA~ 78 (163)
T 3ors_A 4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEK-QVVSAHRTPKM-MVQFASEARERGIN-IIIAGAGGAAHLPGMVAS 78 (163)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTSHHH-HHHHHHHTTTTTCC-EEEEEEESSCCHHHHHHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEE-EEECCcCCHHH-HHHHHHHHHhCCCc-EEEEECCchhhhHHHHHh
Confidence 3455555443 367888999999888887653 44445444543 233332 234 555555566888877754
No 123
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=31.22 E-value=2.7e+02 Score=24.45 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=40.8
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-----cCCeEEEEcCCCCCCHHHHHHH
Q 009809 390 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 390 dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvE~~~~gglg~~v~~ 460 (525)
.|.||.-|. -...+.+|++.|++-|+..+ +.+.+..-.|.+ +.++++ ..+ |+++=.+..+.|...|+.
T Consensus 14 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~e-v~V~SaHR~p~~-~~~~~~~a~~~g~~-ViIa~AG~aa~LpgvvA~ 87 (174)
T 3kuu_A 14 KIAIVMGSKSDWATMQFAADVLTTLNVPFH-VEVVSAHRTPDR-LFSFAEQAEANGLH-VIIAGNGGAAHLPGMLAA 87 (174)
T ss_dssp CEEEEESSGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTCHHH-HHHHHHHTTTTTCS-EEEEEEESSCCHHHHHHH
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEE-EEEEcccCCHHH-HHHHHHHHHhCCCc-EEEEECChhhhhHHHHHh
Confidence 466655443 36788899999998888765 344444444443 334432 234 555555556788877654
No 124
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=31.17 E-value=83 Score=31.19 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCCCcceEEeecCCccCCCCCh-HHHHHHcC-CCHHHHHHHHHHHhh
Q 009809 457 HVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSP-ADQLAQAG-LTPSHIAATVFNILG 512 (525)
Q Consensus 457 ~v~~~l~~~~~~~~~~~~~~ig~~d~~~~~g~~-~~l~~~~g-l~~~~I~~~i~~~l~ 512 (525)
+|.+...+++ ...|||++ +||. .+++++|| -+++.+++.+.+.++
T Consensus 124 ~vv~~ak~~~------~piRIGvN-----~GSL~~~ll~~yg~~~~eamVeSAl~~~~ 170 (366)
T 3noy_A 124 EIVEEAKRRG------VAVRIGVN-----SGSLEKDLLEKYGYPSAEALAESALRWSE 170 (366)
T ss_dssp HHHHHHHHHT------CEEEEEEE-----GGGCCHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------CCEEEecC-----CcCCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444455544 24678874 3444 47888888 589999999877653
No 125
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=30.31 E-value=99 Score=25.15 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
.....|.+|.+.|++.|+...++++.. .|.+.+.+.++++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~~ 48 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILSY 48 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHhh
Confidence 456789999999999999999999864 67888888887753
No 126
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=30.26 E-value=82 Score=28.13 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCcEEEEecccccc---CcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHH
Q 009809 403 CLAASALLESNGLRLTVADARFCKP---LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 403 a~~Aa~~L~~~Gi~v~vi~~~~l~P---~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~ 464 (525)
+...++.+++.|.+++++++..+.| .|.+.+.+.+..+..||+.=--+-+++.+.+..++-+
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 3334556666799999999987665 4566666667777777766554567777777776655
No 127
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=29.60 E-value=2.6e+02 Score=23.66 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=30.6
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEE
Q 009809 392 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITV 446 (525)
Q Consensus 392 ~iva~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvv 446 (525)
++|.|+|+. ..|...++.|++.|+++.++++... .+.+.+..-+..+..+|+.
T Consensus 7 v~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 7 IGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA--VDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC--CCHHHHHHHHHTEEEEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc--CCHHHHHHHHHhCCEEEEE
Confidence 455566654 4444556677778999999998643 0334443334444444443
No 128
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=29.51 E-value=89 Score=25.53 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
.....|.+|.+.|++.|+...++++.. .|...+.+.++++..
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 52 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENS 52 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHc
Confidence 456789999999999999999999864 788888888887654
No 129
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=29.23 E-value=95 Score=28.05 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=35.9
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEE
Q 009809 388 GERVALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 445 (525)
Q Consensus 388 g~dv~iva~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvv 445 (525)
++.+++|.|++.. .......+.|++.|+++.++++.. -+.+.+.+.+..+..|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEEE
Confidence 5789999988752 234444556667799999888765 234444555666766664
No 130
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=28.69 E-value=3e+02 Score=24.10 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=40.0
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc-----CCeEEEEcCCCCCCHHHHHH
Q 009809 389 ERVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS-----HEVLITVEEGSIGGFGSHVV 459 (525)
Q Consensus 389 ~dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvE~~~~gglg~~v~ 459 (525)
+.|.||.-|. -...+.+|++.|++-|+..+ +.+.+..-.|.+. .++.+. .+ |+++=.+..+.|...++
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~d-v~V~SaHR~p~~l-~~~~~~a~~~g~~-ViIa~AG~aa~LpgvvA 85 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELNIPYE-KKVVSAHRTPDYM-FEYAETARERGLK-VIIAGAGGAAHLPGMVA 85 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTSHHHH-HHHHHHTTTTTCC-EEEEEEESSCCHHHHHH
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEE-EEEEeccCCHHHH-HHHHHHHHhCCCc-EEEEECCchhhhHHHHH
Confidence 4566555443 36788899999998888754 3344444444433 344432 34 55555555677776664
No 131
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=28.33 E-value=1.1e+02 Score=24.65 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=36.0
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHH--HHHHHH
Q 009809 393 LLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSH--VVQFLA 463 (525)
Q Consensus 393 iva~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~--v~~~l~ 463 (525)
+|.|+|.. ..|...++.|++.|++++++++... +.+. +..++.+|+.=.-+.++.... +..++.
T Consensus 3 ~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~---~~~~----l~~~d~vi~g~p~y~~~~~~~~~~~~fl~ 72 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT---NVDD----VASKDVILLGCPAMGSEELEDSVVEPFFT 72 (137)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC---CHHH----HHTCSEEEEECCCBTTTBCCHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC---CHHH----HhcCCEEEEEccccCCCCCCHHHHHHHHH
Confidence 45555544 4444555667777999999997654 2222 335666666544333444333 444444
No 132
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=28.30 E-value=2.7e+02 Score=23.49 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=31.1
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEc
Q 009809 393 LLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVE 447 (525)
Q Consensus 393 iva~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 447 (525)
+|.|+|+. ..|...++.|++.|+++.++++... +.+.+.+-+..++.+|+.=
T Consensus 4 ~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV---DPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC---CHHHHHHHHHHCSEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEEc
Confidence 45566654 4444556677778999999998643 3344433344556655543
No 133
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=28.24 E-value=85 Score=25.68 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcC
Q 009809 397 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 448 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~ 448 (525)
|++-..|...++.|++.|+++.++++....| + + +...+.+++.=.
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~---~-l~~~d~iiig~p 54 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNI---D---E-LLNEDILILGCS 54 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H---H-HTTCSEEEEEEC
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H---H-HhhCCEEEEEcC
Confidence 3344455555667777899999999865432 2 2 345566665543
No 134
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=27.41 E-value=83 Score=24.50 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=42.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh-c-cCCeEEEEcCCCCCCHHHH
Q 009809 389 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-K-SHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 389 ~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~-~-~~~~vvvvE~~~~gglg~~ 457 (525)
.+++|.+ -+....|..|...|++.|+....+++..- |--.+.+.+.. . .+=+.|+++....||+...
T Consensus 16 ~~v~vy~-~~~Cp~C~~ak~~L~~~~i~y~~idI~~~-~~~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l 84 (99)
T 3qmx_A 16 AKIEIYT-WSTCPFCMRALALLKRKGVEFQEYCIDGD-NEAREAMAARANGKRSLPQIFIDDQHIGGCDDI 84 (99)
T ss_dssp CCEEEEE-CTTCHHHHHHHHHHHHHTCCCEEEECTTC-HHHHHHHHHHTTTCCCSCEEEETTEEEESHHHH
T ss_pred CCEEEEE-cCCChhHHHHHHHHHHCCCCCEEEEcCCC-HHHHHHHHHHhCCCCCCCEEEECCEEEeChHHH
Confidence 3566655 45568899999999999999999998642 11112333332 1 2235666766557887643
No 135
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.30 E-value=1.6e+02 Score=22.93 Aligned_cols=107 Identities=11% Similarity=0.279 Sum_probs=60.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCe---EEEEcCCCCCCHHHHHHHHHHHcCC
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGSIGGFGSHVVQFLAQDGL 467 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~---vvvvE~~~~gglg~~v~~~l~~~~~ 467 (525)
++||.....-....+-.+..++.|.+++-++-+.- -.+.|+++++++.. ++++++- -|+.....++..-|
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqe---lkdsieelvkkynativvvvvddk---ewaekairfvkslg- 75 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQE---LKDSIEELVKKYNATIVVVVVDDK---EWAEKAIRFVKSLG- 75 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHH---HHHHHHHHTTCCCCEEEEEECSSH---HHHHHHHHHHHHHC-
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHH---HHHHHHHHHHHhCCeEEEEEEccH---HHHHHHHHHHHhcC-
Confidence 56666666666666677777888999998875320 13567888887653 2333332 36655445554433
Q ss_pred CCCCcceEEeecCCccCCCCChHHHH------HHcCC------CHHHHHHHHHHHhhcc
Q 009809 468 LDGTVKWRPLVLPDRYIDHGSPADQL------AQAGL------TPSHIAATVFNILGQT 514 (525)
Q Consensus 468 ~~~~~~~~~ig~~d~~~~~g~~~~l~------~~~gl------~~~~I~~~i~~~l~~~ 514 (525)
..++.+-. |. +++.+- ++-|+ +|++..+..++++.+.
T Consensus 76 ----aqvliiiy-dq-----dqnrleefsrevrrrgfevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 76 ----AQVLIIIY-DQ-----DQNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp ----CCCEEEEE-CS-----CHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred ----CeEEEEEE-eC-----chhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHh
Confidence 33332221 11 122221 22343 7888888888887654
No 136
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=26.79 E-value=3.1e+02 Score=23.70 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=42.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh----cc-CCeEEEEcCCCCCCHHHHHHH
Q 009809 390 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA----KS-HEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 390 dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~----~~-~~~vvvvE~~~~gglg~~v~~ 460 (525)
.|.||.-|. -...+.+|++.|++-|+..+ +.+.+..-.|.+. .++. +. .-.++++=.+..+.|.+.++.
T Consensus 4 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~e-v~V~saHR~p~~~-~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~ 78 (159)
T 3rg8_A 4 LVIILMGSSSDMGHAEKIASELKTFGIEYA-IRIGSAHKTAEHV-VSMLKEYEALDRPKLYITIAGRSNALSGFVDG 78 (159)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEE-EEECCTTTCHHHH-HHHHHHHHTSCSCEEEEEECCSSCCHHHHHHH
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEE-EEEEcccCCHHHH-HHHHHHhhhcCCCcEEEEECCchhhhHHHHHh
Confidence 455555443 36788899999998898655 3444444444432 3333 21 236666666777889888765
No 137
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=26.71 E-value=1.8e+02 Score=32.57 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=49.3
Q ss_pred hhhH--HHHHHHHHHHhhcCCCC---eEEEEcCCCCCCCCCCC-----CcchhhhhhhhcCCCcEEEccCCHHHHHHHHH
Q 009809 275 SSFM--QRAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPT-----HCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 344 (525)
Q Consensus 275 ~~F~--~~a~dqi~~~~~~~~~p---vvi~~~~~G~~g~~G~t-----H~~~~d~~~~~~ipg~~v~~P~~~~e~~~~~~ 344 (525)
+.|. ...+|. ++.++..++| +++++.+-++ |..+++ .....+.+-.-.+|.+. +.=.|+.++...++
T Consensus 287 Ga~~~eG~v~Ea-ln~A~~~~lp~g~vi~iv~NN~~-g~st~~~~~~s~~~~~~~a~a~G~p~~~-VdG~D~~av~~a~~ 363 (868)
T 2yic_A 287 AAFAGQGVVAET-LNLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRSSEYCTDVAKMIGAPIFH-VNGDDPEACAWVAR 363 (868)
T ss_dssp HHHHHCHHHHHH-HTTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCSSSSTTGGGGGGTCCEEE-EETTCHHHHHHHHH
T ss_pred cccccccHHHHH-HHHHHhcCCCCCCeEEEEEcCCc-ccccCccccccccCHHHHHHhCCCcEEE-EeCCCHHHHHHHHH
Confidence 4553 355565 5788889998 8887754443 111111 11233444444566554 36678999999998
Q ss_pred HHHh---cCCCcEEEEe
Q 009809 345 TAAA---IDDRPSCFRY 358 (525)
Q Consensus 345 ~a~~---~~~~Pv~i~~ 358 (525)
.|++ ..++|++|-.
T Consensus 364 ~A~~~ar~~~~PvlIe~ 380 (868)
T 2yic_A 364 LAVDFRQAFKKDVVIDM 380 (868)
T ss_dssp HHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 8874 2478988754
No 138
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.17 E-value=2.6e+02 Score=30.06 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=51.0
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHhcCCCcEEEEecCCCCCCcccCCCCCC---CccccC---ceEEEeeCCcEEEEE
Q 009809 322 MACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKG---IPLEVG---KGRILIEGERVALLG 395 (525)
Q Consensus 322 ~~~ipg~~v~~P~~~~e~~~~~~~a~~~~~~Pv~i~~~~~~~~~~~~p~~~~~---~~~~~g---~~~~l~~g~dv~iva 395 (525)
++.+|.. |+.|.+.+|+..+++.|- ..+-|++.+-.........++..... -...+. +..-+.+...++.|-
T Consensus 202 ~~~~P~a-VV~P~s~eeV~~iv~~A~-~~~ipVvprGgGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVe 279 (658)
T 4bby_A 202 FERIPDI-VLWPTCHDDVVKIVNLAC-KYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVE 279 (658)
T ss_dssp CSCCCSE-EEECCSHHHHHHHHHHHH-HTTCEEEEESSCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEE
T ss_pred ccCCcCE-EEeeCCHHHHHHHHHHHH-HCCCeEEEECCCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEe
Confidence 3456765 999999999999999994 46778888765443221112211110 011222 222234456677888
Q ss_pred echhHHHHHHHHH
Q 009809 396 YGTAVQSCLAASA 408 (525)
Q Consensus 396 ~G~~~~~a~~Aa~ 408 (525)
-|.....+.++++
T Consensus 280 aGv~~~~L~~~L~ 292 (658)
T 4bby_A 280 AGITGQELERQLK 292 (658)
T ss_dssp TTCBHHHHHHHHH
T ss_pred cCchHHHHHHHHH
Confidence 8888887776543
No 139
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=26.13 E-value=51 Score=29.32 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=23.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEec
Q 009809 389 ERVALLGYGTAVQSCLAASALLESNGLRLTVADA 422 (525)
Q Consensus 389 ~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 422 (525)
.||+||+.|..--. +|-.|.+.|++|.|++-
T Consensus 3 ~dV~IIGaGpaGL~---aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAGLS---AAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHHHH---HHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEEC
Confidence 37999998876432 45567788999999984
No 140
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=25.92 E-value=1.9e+02 Score=29.43 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=41.8
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc----c-CCeEEEEcCCCCCCHHHHHHH
Q 009809 390 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----S-HEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 390 dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~----~-~~~vvvvE~~~~gglg~~v~~ 460 (525)
.|.||.-|. -...+.+|++.|++-|+..+ +.+.+..-.|... .++.+ . .+.|+++=.+..+.|.+.|+.
T Consensus 267 ~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~-v~V~saHR~p~~~-~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~ 341 (425)
T 2h31_A 267 RVVVLMGSTSDLGHCEKIKKACGNFGIPCE-LRVTSAHKGPDET-LRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSG 341 (425)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTCHHHH-HHHHHHHHTTCCCEEEEEECCSSCCHHHHHHH
T ss_pred eEEEEecCcccHHHHHHHHHHHHHcCCceE-EeeeeccCCHHHH-HHHHHHHHHCCCCeEEEEEcCcccchHhHHhc
Confidence 455554333 36788899999998898543 2333344444432 33332 3 335777777778899988765
No 141
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=25.82 E-value=3.5e+02 Score=23.96 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=38.6
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-----cCCeEEEEcCCCCCCHHHHHHH
Q 009809 389 ERVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 389 ~dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvE~~~~gglg~~v~~ 460 (525)
+.|.||.-|. -...+.+|++.|++-|+..++ .+.+..-.|.+ +.++.+ ..+ |+++=.+..+.|...|+.
T Consensus 14 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~-l~~~~~~a~~~g~~-ViIa~AG~aa~LpgvvA~ 88 (183)
T 1o4v_A 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEI-TIVSAHRTPDR-MFEYAKNAEERGIE-VIIAGAGGAAHLPGMVAS 88 (183)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEE-EECCTTTCHHH-HHHHHHHTTTTTCC-EEEEEEESSCCHHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHcCCCeEE-EEEcccCCHHH-HHHHHHHHHhCCCc-EEEEecCcccccHHHHHh
Confidence 3455554332 357888999999988886433 23333334433 234432 234 555555556777766654
No 142
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=25.81 E-value=2.1e+02 Score=23.94 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=40.3
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHH-HhccCCeEEEEcC
Q 009809 390 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRS-LAKSHEVLITVEE 448 (525)
Q Consensus 390 dv~iva~G~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~-~~~~~~~vvvvE~ 448 (525)
++.|+..+.. ...|.+..+.|++.|+.+++...++=.++... |++ ..++..-+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~k-IR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQA-LEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHH-HHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHH-HHHHHHcCCCEEEEEec
Confidence 6777777754 58899999999999999999775322344433 443 3456777777754
No 143
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=25.52 E-value=51 Score=27.31 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh---------ccCCeEEEEcCCCCCCHHHH
Q 009809 403 CLAASALLESNGLRLTVADARFCKPLDHALIRSLA---------KSHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 403 a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~---------~~~~~vvvvE~~~~gglg~~ 457 (525)
+..|...|+.+||..+.+|+.. .|-..+.+.+.. ..+-+.|++++...||+-..
T Consensus 19 c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~ 81 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred HHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence 5778888999999999999964 222222233222 11346778888778998644
No 144
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=25.34 E-value=1e+02 Score=25.20 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=34.8
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 397 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
-.....|.+|.+.|++.|+...++++.. .|...+.+.++++.
T Consensus 11 ~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~ 52 (120)
T 3gkx_A 11 YPACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPL 52 (120)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHH
Confidence 3456889999999999999999999865 67888888887754
No 145
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=25.06 E-value=46 Score=29.37 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=33.0
Q ss_pred HHHHHhCCCcEEEEeccccccC-----------cHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHH
Q 009809 407 SALLESNGLRLTVADARFCKPL-----------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 407 a~~L~~~Gi~v~vi~~~~l~P~-----------d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~ 464 (525)
++.++ .|.+++++++..+..+ +.+.+.+.+..+..+|+.=--+.+++...+..++-.
T Consensus 30 ~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 30 IGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHH
T ss_pred HHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHH
Confidence 33443 5888999998764322 223344555566766665544456666666655544
No 146
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=24.49 E-value=3.5e+02 Score=23.59 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=41.6
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc----cCCeEEEEcCCCCCCHHHHHHH
Q 009809 390 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 390 dv~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~----~~~~vvvvE~~~~gglg~~v~~ 460 (525)
.|.||.-|. -...+.+|++.|++-|+..+ +.+.+..-.|.+. .++++ +.-+++++=.+..+.|...|+.
T Consensus 8 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~e-v~V~SaHR~p~~~-~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 81 (169)
T 3trh_A 8 FVAILMGSDSDLSTMETAFTELKSLGIPFE-AHILSAHRTPKET-VEFVENADNRGCAVFIAAAGLAAHLAGTIAA 81 (169)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTSHHHH-HHHHHHHHHTTEEEEEEEECSSCCHHHHHHH
T ss_pred cEEEEECcHHhHHHHHHHHHHHHHcCCCEE-EEEEcccCCHHHH-HHHHHHHHhCCCcEEEEECChhhhhHHHHHh
Confidence 455555443 36788899999998888765 3444444444432 33332 2224565655667888877754
No 147
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=24.28 E-value=36 Score=28.24 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=28.4
Q ss_pred eeCCcEEEEEechhHH--HHHHHHHHHHhCCCcEEEEecc
Q 009809 386 IEGERVALLGYGTAVQ--SCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 386 ~~g~dv~iva~G~~~~--~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
.++.++.||++|.... .--+..+.|++.||.+++.+.+
T Consensus 59 ~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 59 EKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp TTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred hCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 3457899999998654 3445567788999999999853
No 148
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=24.21 E-value=93 Score=24.98 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccC
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 440 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~ 440 (525)
+....|.+|.+.|++.|+...++++.. .|.+.+.+.++++..
T Consensus 8 ~~C~~C~kak~~L~~~gi~~~~~di~~-~~~~~~~l~~~~~~~ 49 (114)
T 1rw1_A 8 KACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAEH 49 (114)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHCCCceEEEeecC-CCCCHHHHHHHHHhC
Confidence 456889999999999999999999853 577888887776543
No 149
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=24.20 E-value=85 Score=28.82 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=47.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHHh---CCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCC-CCCH---HHHHHHH
Q 009809 389 ERVALLGYGTAVQSCLAASALLES---NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGF---GSHVVQF 461 (525)
Q Consensus 389 ~dv~iva~G~~~~~a~~Aa~~L~~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~-~ggl---g~~v~~~ 461 (525)
..-++|.|||+...+.+.|+.|.+ .|+++.|+++....+ + + +...+.+|++=..+ .|-+ ...+.+.
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~---~---~-l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~ 112 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRL---S---C-LEEERLLLVVTSTFGNGDCPGNGEKLKKS 112 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCG---G---G-GGTCSEEEEEEECBTTTBCCGGGHHHHHH
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCH---h---H-hccCCeEEEEEeccCCCcCCHHHHHHHHH
Confidence 345678899999888888777653 488899998765432 1 1 22455666665433 2322 2234455
Q ss_pred HHHcCCCCCCcceEEeec
Q 009809 462 LAQDGLLDGTVKWRPLVL 479 (525)
Q Consensus 462 l~~~~~~~~~~~~~~ig~ 479 (525)
|.+....-...++-.+|.
T Consensus 113 L~~~~~~l~~~~~aVfGl 130 (219)
T 3hr4_A 113 LFMLKELNNKFRYAVFGL 130 (219)
T ss_dssp HHHCCCCSSCCEEEEEEE
T ss_pred HHhcchhhcCCEEEEEeC
Confidence 554321001345556665
No 150
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=23.82 E-value=92 Score=25.46 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCC
Q 009809 398 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 441 (525)
Q Consensus 398 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~ 441 (525)
.....|.+|.+.|++.|+....+++.. .|...+.+.++++..+
T Consensus 13 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 13 PRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp TTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 456789999999999999999999865 6888888888776543
No 151
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=23.52 E-value=1.2e+02 Score=22.61 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=38.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcH----HHHHHHhc-cCCeEEEEcCCCCCCHH
Q 009809 390 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH----ALIRSLAK-SHEVLITVEEGSIGGFG 455 (525)
Q Consensus 390 dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~----~~i~~~~~-~~~~vvvvE~~~~gglg 455 (525)
+++|.+ .+....|..|...|++.|+....+++....+-+. +.+.+... ..-++++++....+|+.
T Consensus 13 ~v~ly~-~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~ 82 (92)
T 3ic4_A 13 EVLMYG-LSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN 82 (92)
T ss_dssp SSEEEE-CTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCC
T ss_pred eEEEEE-CCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCC
Confidence 355543 3456788888888888899999999875544222 22322221 23456666544456664
No 152
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=23.19 E-value=4e+02 Score=29.84 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEe
Q 009809 335 DEAELFHMVATAAAIDDRPSCFRY 358 (525)
Q Consensus 335 ~~~e~~~~~~~a~~~~~~Pv~i~~ 358 (525)
|..++..+++.|.+..++|++|..
T Consensus 365 D~~~l~~a~~~A~~~~~~PtlI~~ 388 (886)
T 2qtc_A 365 DPKKIYAAFKKAQETKGKATVILA 388 (886)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEE
Confidence 788888888888665568988754
No 153
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=23.07 E-value=3.1e+02 Score=22.41 Aligned_cols=104 Identities=8% Similarity=0.046 Sum_probs=54.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHHcCCCC
Q 009809 390 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 469 (525)
Q Consensus 390 dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~~~~~~ 469 (525)
.+.|++.|.......+.++ +.|+.+.+ ..++.+.+.++++.+..+| .-.. .-|++..+.+.+.-
T Consensus 34 ~l~i~G~g~~~~~~~~~~~---~~~~~v~~------g~~~~~~~~~~~~~adv~v-~ps~-~e~~~~~~~Eama~----- 97 (166)
T 3qhp_A 34 VLLLKGKGPDEKKIKLLAQ---KLGVKAEF------GFVNSNELLEILKTCTLYV-HAAN-VESEAIACLEAISV----- 97 (166)
T ss_dssp EEEEECCSTTHHHHHHHHH---HHTCEEEC------CCCCHHHHHHHHTTCSEEE-ECCC-SCCCCHHHHHHHHT-----
T ss_pred EEEEEeCCccHHHHHHHHH---HcCCeEEE------eecCHHHHHHHHHhCCEEE-ECCc-ccCccHHHHHHHhc-----
Confidence 4556666655444443333 33663322 3446777888888876444 3322 34566566677652
Q ss_pred CCc-ceEE---eecCCccCCCCChHHHHHHcC-CCHHHHHHHHHHHhhccc
Q 009809 470 GTV-KWRP---LVLPDRYIDHGSPADQLAQAG-LTPSHIAATVFNILGQTR 515 (525)
Q Consensus 470 ~~~-~~~~---ig~~d~~~~~g~~~~l~~~~g-l~~~~I~~~i~~~l~~~~ 515 (525)
.. |+.. .|....+...+. . .+. -+++++.+++.+++..+.
T Consensus 98 -G~vPvi~~~~~~~~~~~~~~~~--~---~~~~~~~~~l~~~i~~l~~~~~ 142 (166)
T 3qhp_A 98 -GIVPVIANSPLSATRQFALDER--S---LFEPNNAKDLSAKIDWWLENKL 142 (166)
T ss_dssp -TCCEEEECCTTCGGGGGCSSGG--G---EECTTCHHHHHHHHHHHHHCHH
T ss_pred -CCCcEEeeCCCCchhhhccCCc--e---EEcCCCHHHHHHHHHHHHhCHH
Confidence 23 5544 111112222110 0 111 278999999999887543
No 154
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=23.02 E-value=2.1e+02 Score=23.42 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=24.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEec
Q 009809 389 ERVALLGYGTAVQSCLAASALLESNGLRLTVADA 422 (525)
Q Consensus 389 ~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 422 (525)
..++|+++|.+-..+ ++.|.+.|.++.+++.
T Consensus 8 ~~viIiG~G~~G~~l---a~~L~~~g~~v~vid~ 38 (140)
T 3fwz_A 8 NHALLVGYGRVGSLL---GEKLLASDIPLVVIET 38 (140)
T ss_dssp SCEEEECCSHHHHHH---HHHHHHTTCCEEEEES
T ss_pred CCEEEECcCHHHHHH---HHHHHHCCCCEEEEEC
Confidence 468999999876653 4567778999999986
No 155
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.87 E-value=86 Score=27.88 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEeccccccC-----------------cH-HHHHHHhccCCeEEEEcCCCCCCHHHHH
Q 009809 397 GTAVQSCLAASALLESNGLRLTVADARFCKPL-----------------DH-ALIRSLAKSHEVLITVEEGSIGGFGSHV 458 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~-----------------d~-~~i~~~~~~~~~vvvvE~~~~gglg~~v 458 (525)
|.+-..+..+++.|++.|.+++++++....|. |. +.+.+.+..+..||+.=--+.+++...+
T Consensus 18 g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP~y~~~~~~~l 97 (211)
T 1ydg_A 18 GTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQM 97 (211)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEEEETTEECHHH
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcCccccCccHHH
Confidence 33445566667778778999999998765110 10 1122334456666655433456776677
Q ss_pred HHHHHH
Q 009809 459 VQFLAQ 464 (525)
Q Consensus 459 ~~~l~~ 464 (525)
..++..
T Consensus 98 k~~ld~ 103 (211)
T 1ydg_A 98 RAFIDT 103 (211)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666643
No 156
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=22.39 E-value=2.1e+02 Score=24.80 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCC--CcEEEEecccc--ccCc------------------------HHHHHHHhccCCeEEEEcCCCCC
Q 009809 401 QSCLAASALLESNG--LRLTVADARFC--KPLD------------------------HALIRSLAKSHEVLITVEEGSIG 452 (525)
Q Consensus 401 ~~a~~Aa~~L~~~G--i~v~vi~~~~l--~P~d------------------------~~~i~~~~~~~~~vvvvE~~~~g 452 (525)
..+...++.|++.| .+++++++... .+++ .+.+.+.+..+..||+.=--+.+
T Consensus 20 ~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~ 99 (201)
T 1t5b_A 20 QLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNF 99 (201)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTT
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccC
Confidence 34445566777765 89999998753 2222 12334455667777776655567
Q ss_pred CHHHHHHHHHHH
Q 009809 453 GFGSHVVQFLAQ 464 (525)
Q Consensus 453 glg~~v~~~l~~ 464 (525)
++.+.+..++-.
T Consensus 100 ~~p~~lK~~iD~ 111 (201)
T 1t5b_A 100 NIPTQLKNYFDL 111 (201)
T ss_dssp BCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 787777776654
No 157
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=22.36 E-value=1.3e+02 Score=27.55 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccc--cC-------------------------------cH--HHHHHHhccCCeEE
Q 009809 400 VQSCLAASALLESNGLRLTVADARFCK--PL-------------------------------DH--ALIRSLAKSHEVLI 444 (525)
Q Consensus 400 ~~~a~~Aa~~L~~~Gi~v~vi~~~~l~--P~-------------------------------d~--~~i~~~~~~~~~vv 444 (525)
...+..+++.|++.|.+++++|+.... |. +. ....+.+..+..||
T Consensus 18 ~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd~~~~~~~l~~aD~iv 97 (228)
T 3tem_A 18 GSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVI 97 (228)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHHHHHHHHHHHhCCEEE
Confidence 345555677787789999999996532 31 11 22334466677777
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q 009809 445 TVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 445 vvE~~~~gglg~~v~~~l~~ 464 (525)
+.=--+-+++.+.+..++-.
T Consensus 98 ~~~P~y~~~~p~~lK~~iD~ 117 (228)
T 3tem_A 98 FQFPLYWFSVPAILKGWMDR 117 (228)
T ss_dssp EEEECBTTBCCHHHHHHHHH
T ss_pred EECChhhcccCHHHHHHHHH
Confidence 66555557777777666644
No 158
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=22.15 E-value=2e+02 Score=20.47 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=39.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCCCCCHHHHHHHHHH
Q 009809 391 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQFLA 463 (525)
Q Consensus 391 v~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~~gglg~~v~~~l~ 463 (525)
+++.+ -.....|..+...|++.|++...+++.. .|-..+.+.+... ..=++++++....+|.. .|.+++.
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~~~i~~~~~~i~~-~~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~-~i~~~~~ 73 (82)
T 1fov_A 3 VEIYT-KETCPYCHRAKALLSSKGVSFQELPIDG-NAAKREEMIKRSGRTTVPQIFIDAQHIGGYD-DLYALDA 73 (82)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHHTCCCEEEECTT-CSHHHHHHHHHHSSCCSCEEEETTEEEESHH-HHHHHHH
T ss_pred EEEEE-CCCChhHHHHHHHHHHCCCCcEEEECCC-CHHHHHHHHHHhCCCCcCEEEECCEEEeCHH-HHHHHHH
Confidence 44443 2445777888888888899999999863 1211222333332 22245556544467764 4444443
No 159
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=21.93 E-value=5.7e+02 Score=25.05 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=41.5
Q ss_pred EEEEech-hHHHHHHHHHHHHhCCCcEEEEeccccccCcHH-----HHHHHhccC-CeEEEEcCCCCCCH
Q 009809 392 ALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHA-----LIRSLAKSH-EVLITVEEGSIGGF 454 (525)
Q Consensus 392 ~iva~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~-----~i~~~~~~~-~~vvvvE~~~~ggl 454 (525)
+|+++|- ...+...|++.+++.|-++-+++|.+-.|-+.+ .|..+-+.. ...|..=+|..|++
T Consensus 138 viLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~ 207 (350)
T 3g8r_A 138 VVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHEDPDL 207 (350)
T ss_dssp EEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCCSSC
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCCCCc
Confidence 5788885 468999999999888888888888777775443 333333334 23344445665543
No 160
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=21.68 E-value=4.1e+02 Score=23.28 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=38.7
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHh----ccCCeEEEEcCCCCCCHHHHHHH
Q 009809 389 ERVALLGYG-TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA----KSHEVLITVEEGSIGGFGSHVVQ 460 (525)
Q Consensus 389 ~dv~iva~G-~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~----~~~~~vvvvE~~~~gglg~~v~~ 460 (525)
+.|.||.=| |-...+.+|++.|++-|+..+ +.+.+..-.|.+. .+++ .+.-+++++=.+..+.|.+.++.
T Consensus 13 P~V~IimGS~SD~~v~~~a~~~l~~~gi~~e-v~V~saHR~p~~l-~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~ 87 (173)
T 4grd_A 13 PLVGVLMGSSSDWDVMKHAVAILQEFGVPYE-AKVVSAHRMPDEM-FDYAEKARERGLRAIIAGAGGAAHLPGMLAA 87 (173)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTSHHHH-HHHHHHHTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred CeEEEEeCcHhHHHHHHHHHHHHHHcCCCEE-EEEEccccCHHHH-HHHHHHHHhcCCeEEEEeccccccchhhhee
Confidence 356655533 346788899999998898654 2333444444432 2332 22223444444556777766654
No 161
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=21.46 E-value=2.1e+02 Score=23.50 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhcc
Q 009809 397 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 439 (525)
Q Consensus 397 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~ 439 (525)
-+....|.+|...|++.|+...++++.. .|...+.+.++++.
T Consensus 8 ~~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~el~~~l~~ 49 (132)
T 1z3e_A 8 SPSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRM 49 (132)
T ss_dssp CTTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHcCCceEEEEccC-CCccHHHHHHHHHH
Confidence 3556889999999999999999999864 67777888887753
No 162
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.43 E-value=78 Score=25.25 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=39.3
Q ss_pred cEEEEEechhHHHHH------HHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-------c--CCeEEEEcCCCCCCH
Q 009809 390 RVALLGYGTAVQSCL------AASALLESNGLRLTVADARFCKPLDHALIRSLAK-------S--HEVLITVEEGSIGGF 454 (525)
Q Consensus 390 dv~iva~G~~~~~a~------~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-------~--~~~vvvvE~~~~ggl 454 (525)
.|+|.+.- ....|. +|.+.|++.|+....+|+.. .|-..+.+.+... . +=+.|+++....||+
T Consensus 9 ~V~vy~~~-~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~-~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG~ 86 (111)
T 2ct6_A 9 VIRVFIAS-SSGFVAIKKKQQDVVRFLEANKIEFEEVDITM-SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDY 86 (111)
T ss_dssp CEEEEECS-SCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT-CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEEH
T ss_pred EEEEEEcC-CCCCcccchhHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeCH
Confidence 45665543 334455 68888889999999999964 2211223333320 1 236777887667887
Q ss_pred HH
Q 009809 455 GS 456 (525)
Q Consensus 455 g~ 456 (525)
..
T Consensus 87 d~ 88 (111)
T 2ct6_A 87 DS 88 (111)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 163
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=21.22 E-value=2.9e+02 Score=21.66 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEeccccccCcH----HHHHHHh-ccCCeEEEEcCCCCCCHHHH
Q 009809 388 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH----ALIRSLA-KSHEVLITVEEGSIGGFGSH 457 (525)
Q Consensus 388 g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~----~~i~~~~-~~~~~vvvvE~~~~gglg~~ 457 (525)
..+++|.+. +....|..|...|++.|++...+++... + +. +.+.+.. ..+=+.|.+.....||+...
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~-~-~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l 87 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQV-D-DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTS-T-THHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCC-C-ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence 345766554 5678899999999999999999998542 1 22 2232322 22335666765557888643
No 164
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=20.99 E-value=5.9e+02 Score=24.90 Aligned_cols=71 Identities=10% Similarity=0.176 Sum_probs=45.3
Q ss_pred EEEEEechh-HHHHHHHHHHHHhCCCcEEEEeccccccCcH-----HHHHHHhccC-CeEEEEcCCCCCCHHHHHHHHH
Q 009809 391 VALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDH-----ALIRSLAKSH-EVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 391 v~iva~G~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~-----~~i~~~~~~~-~~vvvvE~~~~gglg~~v~~~l 462 (525)
=+|+++|-. ..+...|++.+++.|-++-++++.+-.|-+. ..|..+-+.. ...|..=+|..| ....+++..
T Consensus 150 PviLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G-~~~~~AAvA 227 (349)
T 2wqp_A 150 PIILSTGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLD-NYACLGAVA 227 (349)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSS-SHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCCc-HHHHHHHHH
Confidence 368888864 6899999999988888888888777776543 3343333334 333444456544 655555543
No 165
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=20.81 E-value=1.7e+02 Score=24.12 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=37.7
Q ss_pred EEEechh----HHHHHHHHHHHHhCCCcEEEEeccccccCcHHHHHHHhc-cCCeEEEEcCCC-C--CCHHHHHHHHHHH
Q 009809 393 LLGYGTA----VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGS-I--GGFGSHVVQFLAQ 464 (525)
Q Consensus 393 iva~G~~----~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~-~~~~vvvvE~~~-~--gglg~~v~~~l~~ 464 (525)
+|.|||. -..|...++.|++.|+++.++++....+-+ +. ..+.+|+.=.-+ . |.+...+..++..
T Consensus 5 ~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~-------l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~ 77 (148)
T 3f6r_A 5 LIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAEN-------LADGYDAVLFGCSAWGMEDLEMQDDFLSLFEE 77 (148)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTT-------TTTTCSEEEEEECEECSSSCEECHHHHHHHTT
T ss_pred EEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhH-------hcccCCEEEEEecccCCCCCCCcHHHHHHHHH
Confidence 4445554 345555566677789999999987654322 22 455666554333 2 4566666665543
No 166
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.76 E-value=1.4e+02 Score=26.20 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCc----------HHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHHHH
Q 009809 402 SCLAASALLESNGLRLTVADARFCKPLD----------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 402 ~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d----------~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l~~ 464 (525)
.+..+++.++ .|.+++++++.-+-.++ .+.+.+.+..+..+|+.=--+.+++.+.+..++-.
T Consensus 21 la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~ 92 (192)
T 3fvw_A 21 LAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLDW 92 (192)
T ss_dssp HHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHHH
Confidence 3444455554 68999999997642222 23455666778888877655567776666665543
No 167
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=20.72 E-value=68 Score=24.09 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=25.7
Q ss_pred CCChHHHHHHcCCCHHHHHHHHHHHhhcccccc
Q 009809 486 HGSPADQLAQAGLTPSHIAATVFNILGQTREAL 518 (525)
Q Consensus 486 ~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~ 518 (525)
.-|.++..+.+|++++.+++++.++++. ++++
T Consensus 38 ~~tLeeA~~~hgiD~d~ll~eLn~~i~~-~~~~ 69 (76)
T 2k53_A 38 GESIEDACAVHGIDADKLVKELNEYFEK-KEVL 69 (76)
T ss_dssp CSBHHHHHHHHTCCHHHHHHHHHHHHHH-HHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHhh-cchH
Confidence 3467888899999999999999998854 4443
No 168
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=20.66 E-value=1e+02 Score=27.47 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCcEE-EEeccccccC-c-----------HHHHHHHhccCCeEEEEcCCCCCCHHHHHHHHH
Q 009809 405 AASALLESNGLRLT-VADARFCKPL-D-----------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 462 (525)
Q Consensus 405 ~Aa~~L~~~Gi~v~-vi~~~~l~P~-d-----------~~~i~~~~~~~~~vvvvE~~~~gglg~~v~~~l 462 (525)
.+++.+ ++|.+++ ++++.-+ |+ + .+.+.+.+..+..+|++=--+.+++...+..++
T Consensus 28 ~~~~~~-~~g~~v~~~idL~~l-P~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~i 96 (199)
T 4hs4_A 28 ALPEIA-PEGIAITPLGSIGTF-PHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAI 96 (199)
T ss_dssp HHHHHC-CTTEEEEECCCGGGS-CCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCBTTBCCHHHHHHH
T ss_pred HHHHHc-cCCCEEEEEEehhhc-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCccCCCcCHHHHHHH
Confidence 333444 3588888 8888665 43 2 234555566677777766555566655555544
No 169
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=20.47 E-value=1.8e+02 Score=28.37 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=26.5
Q ss_pred cCceEeeccCCCCHHHHHHHHHHhhhcCCCCCEEEEEE
Q 009809 126 LGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVV 163 (525)
Q Consensus 126 ~g~~~~~~~dG~d~~~l~~al~~a~~~~~~~P~~i~v~ 163 (525)
-||.++.+ .|..+...+++.|.+ .++|++|...
T Consensus 152 P~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~~ 184 (341)
T 2ozl_B 152 PGLKVVSP---WNSEDAKGLIKSAIR--DNNPVVVLEN 184 (341)
T ss_dssp TTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEC
T ss_pred CCCEEEEe---CCHHHHHHHHHHHHh--cCCCEEEEEC
Confidence 47887767 888888999988877 5789988764
No 170
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=20.46 E-value=44 Score=28.28 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=27.0
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhCCCcEEEEecc
Q 009809 388 GERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 388 g~dv~iva~G~~~~-~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
..+++||++|.... .--+..+.|++.||.+++.+.+
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 37999999998653 2234456788899999999864
No 171
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=20.35 E-value=43 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=27.1
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhCCCcEEEEecc
Q 009809 388 GERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 423 (525)
Q Consensus 388 g~dv~iva~G~~~~-~a~~Aa~~L~~~Gi~v~vi~~~ 423 (525)
..++.||++|.... .--+..+.|++.||.+++.+.+
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 37899999998752 2234556788899999999853
No 172
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.19 E-value=1.9e+02 Score=25.42 Aligned_cols=64 Identities=6% Similarity=-0.019 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCC--CcEEEEecc--cc--ccCcH-----------------------------HHHHHHhccCCeEEE
Q 009809 401 QSCLAASALLESNG--LRLTVADAR--FC--KPLDH-----------------------------ALIRSLAKSHEVLIT 445 (525)
Q Consensus 401 ~~a~~Aa~~L~~~G--i~v~vi~~~--~l--~P~d~-----------------------------~~i~~~~~~~~~vvv 445 (525)
..+..+++.+++.| .+++++++. .. .+++. +.+.+.+..+..||+
T Consensus 21 ~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~ 100 (208)
T 2hpv_A 21 RALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVI 100 (208)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEE
Confidence 34445567777776 999999998 53 33322 123344556777776
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 009809 446 VEEGSIGGFGSHVVQFLAQ 464 (525)
Q Consensus 446 vE~~~~gglg~~v~~~l~~ 464 (525)
.=--+.+++.+.+..++-.
T Consensus 101 ~~P~y~~~~pa~lK~~iD~ 119 (208)
T 2hpv_A 101 ANPMWNLNVPTRLKAWVDT 119 (208)
T ss_dssp EEECBTTBCCHHHHHHHHH
T ss_pred EeccccCCCCHHHHHHHHH
Confidence 6655567787777776654
Done!