BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009810
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QUI|A Chain A, Phosphate-Binding Protein Mutant With Asp 137 Replaced By
Gly Complex With Bromine And Phosphate
pdb|1QUJ|A Chain A, Phosphate-Binding Protein Mutant With Asp 137 Replaced By
Gly Complex With Chlorine And Phosphate
Length = 321
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1IXH|A Chain A, Phosphate-Binding Protein (Pbp) Complexed With Phosphate
Length = 321
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1IXG|A Chain A, Phosphate-Binding Protein Mutant With Thr 141 Replaced By
Asp (T141d), Complexed With Phospate
Length = 321
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1IXI|A Chain A, Phosphate-Binding Protein Mutant With Asp 56 Replaced By
Asn Complex With Monobasic Phosphate Ion
Length = 321
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1QUK|A Chain A, Phosphate-Binding Protein Mutant With Asp 137 Replaced By
Asn Complex With Phosphate
Length = 321
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1OIB|A Chain A, Phosphate-Binding Protein Mutant T141d
pdb|1OIB|B Chain B, Phosphate-Binding Protein Mutant T141d
pdb|1PBP|A Chain A, Fine Tuning Of The Specificity Of The Periplasmic
Phosphate Transport Receptor: Site-Directed Mutagenesis,
Ligand Binding, And Crystallographic Studies
Length = 321
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1QUL|A Chain A, Phosphate-Binding Protein Mutant With Asp 137 Replaced By
Thr Complex With Chlorine And Phosphate
Length = 321
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|2ABH|A Chain A, Phosphate-Binding Protein (Re-Refined)
Length = 321
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1A54|A Chain A, Phosphate-Binding Protein Mutant A197c Labelled With A
Coumarin Fluorophore And Bound To Dihydrogenphosphate
Ion
pdb|1A55|A Chain A, Phosphate-Binding Protein Mutant A197c
Length = 321
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|1A40|A Chain A, Phosphate-Binding Protein With Ala 197 Replaced With Trp
Length = 321
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 348 IGQDILIVRVPNLKVGTVLLSCAFLYDIFWVFVSKW 383
IG +L V +P LK G ++L L DI+ + KW
Sbjct: 76 IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKW 111
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINN 133
L G+ L+ RG SF K A + A A++I NN
Sbjct: 113 LNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNN 147
>pdb|3H3L|A Chain A, Crystal Structure Of Putative Sugar Hydrolase
(Yp_001304206.1) From Parabacteroides Distasonis Atcc
8503 At 1.59 A Resolution
pdb|3H3L|B Chain B, Crystal Structure Of Putative Sugar Hydrolase
(Yp_001304206.1) From Parabacteroides Distasonis Atcc
8503 At 1.59 A Resolution
pdb|3H3L|C Chain C, Crystal Structure Of Putative Sugar Hydrolase
(Yp_001304206.1) From Parabacteroides Distasonis Atcc
8503 At 1.59 A Resolution
Length = 241
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 424 GFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQP 481
GFGD+I F +W + K SG F A G + + L+D P
Sbjct: 66 GFGDLIYDKKFKNFVFEIEWKIDKAGNSGIFYTAQEIEGTPIYYSSPEYQLLDNENXP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,652,330
Number of Sequences: 62578
Number of extensions: 651872
Number of successful extensions: 1259
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 21
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)