Query 009810
Match_columns 525
No_of_seqs 358 out of 1524
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 17:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2442 Uncharacterized conser 100.0 2E-128 4E-133 1002.5 34.5 501 19-524 14-531 (541)
2 KOG2443 Uncharacterized conser 100.0 4.4E-64 9.5E-69 505.2 15.2 294 187-515 22-345 (362)
3 PF04258 Peptidase_A22B: Signa 100.0 5.4E-66 1.2E-70 527.9 -0.1 264 240-509 2-298 (298)
4 smart00730 PSN Presenilin, sig 100.0 5.2E-48 1.1E-52 385.5 12.4 232 244-501 3-249 (249)
5 cd02132 PA_GO-like PA_GO-like: 100.0 3.1E-29 6.6E-34 230.2 16.4 139 42-180 1-139 (139)
6 cd02129 PA_hSPPL_like PA_hSPPL 99.9 4.5E-23 9.7E-28 184.5 12.1 116 43-179 1-119 (120)
7 cd02126 PA_EDEM3_like PA_EDEM3 99.9 2E-22 4.4E-27 182.1 12.6 116 62-180 2-126 (126)
8 cd02127 PA_hPAP21_like PA_hPAP 99.9 2.6E-21 5.7E-26 173.0 13.1 110 66-180 1-116 (118)
9 cd02125 PA_VSR PA_VSR: Proteas 99.9 2.6E-21 5.7E-26 175.2 13.2 112 66-180 1-127 (127)
10 cd02123 PA_C_RZF_like PA_C-RZF 99.9 7.1E-21 1.5E-25 177.5 14.9 116 56-175 20-142 (153)
11 cd02122 PA_GRAIL_like PA _GRAI 99.8 1.7E-20 3.8E-25 172.1 14.6 110 63-180 18-138 (138)
12 cd04818 PA_subtilisin_1 PA_sub 99.8 3.4E-19 7.4E-24 158.6 12.8 114 63-180 1-118 (118)
13 cd04813 PA_1 PA_1: Protease-as 99.8 2.7E-19 5.8E-24 159.9 11.1 103 62-171 5-110 (117)
14 cd04816 PA_SaNapH_like PA_SaNa 99.8 3.9E-18 8.5E-23 152.9 13.5 113 63-180 4-122 (122)
15 cd02130 PA_ScAPY_like PA_ScAPY 99.7 2.4E-17 5.3E-22 147.7 13.5 113 58-180 7-122 (122)
16 cd04817 PA_VapT_like PA_VapT_l 99.7 4.7E-16 1E-20 142.8 13.4 96 77-176 34-137 (139)
17 cd02124 PA_PoS1_like PA_PoS1_l 99.7 2.7E-16 5.8E-21 142.9 11.5 89 86-180 38-129 (129)
18 KOG4628 Predicted E3 ubiquitin 99.6 1.8E-15 4E-20 156.2 15.2 110 58-174 34-151 (348)
19 KOG3920 Uncharacterized conser 99.5 7E-15 1.5E-19 134.9 5.9 139 38-183 27-174 (193)
20 PF02225 PA: PA domain; Inter 99.5 2.5E-14 5.4E-19 122.5 7.1 91 78-170 5-101 (101)
21 cd00538 PA PA: Protease-associ 99.5 8.6E-14 1.9E-18 123.6 9.9 94 86-180 27-126 (126)
22 cd02133 PA_C5a_like PA_C5a_lik 99.4 3.3E-12 7.1E-17 117.7 13.2 94 78-177 25-119 (143)
23 cd04819 PA_2 PA_2: Protease-as 99.4 4E-12 8.7E-17 115.1 12.0 114 59-179 9-126 (127)
24 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 9.2E-12 2E-16 113.9 7.8 107 74-180 12-134 (134)
25 cd02120 PA_subtilisin_like PA_ 99.1 1.6E-10 3.5E-15 103.3 9.3 82 88-175 36-121 (126)
26 cd02128 PA_TfR PA_TfR: Proteas 98.9 8.4E-09 1.8E-13 99.0 8.8 92 77-171 27-154 (183)
27 PF06550 DUF1119: Protein of u 98.7 6.5E-08 1.4E-12 97.5 10.7 155 329-499 98-279 (283)
28 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 4.1E-06 8.9E-11 78.3 10.6 90 78-170 19-132 (151)
29 cd02121 PA_GCPII_like PA_GCPII 98.3 1.9E-06 4.1E-11 85.3 8.7 92 78-172 44-189 (220)
30 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 3.5E-06 7.6E-11 78.0 7.8 88 79-168 20-133 (142)
31 cd04820 PA_M28_1_1 PA_M28_1_1: 98.2 4.7E-06 1E-10 76.7 7.6 58 78-135 21-96 (137)
32 cd02131 PA_hNAALADL2_like PA_h 97.9 2.8E-05 6.2E-10 72.4 6.3 94 77-171 13-138 (153)
33 COG3389 Uncharacterized protei 97.6 7.9E-05 1.7E-09 73.2 5.1 118 362-495 138-268 (277)
34 cd04821 PA_M28_1_2 PA_M28_1_2: 95.0 0.046 9.9E-07 51.7 5.6 56 79-134 22-102 (157)
35 PF01080 Presenilin: Presenili 92.6 0.18 3.9E-06 54.3 5.4 64 421-495 326-390 (403)
36 KOG2736 Presenilin [Signal tra 90.1 0.23 5E-06 52.6 3.0 68 421-498 320-387 (406)
37 KOG2195 Transferrin receptor a 78.2 3.4 7.3E-05 47.9 5.5 71 61-134 143-218 (702)
38 COG4882 Predicted aminopeptida 49.0 92 0.002 33.7 8.8 88 98-191 87-180 (486)
39 KOG2927 Membrane component of 41.5 8 0.00017 41.0 -0.3 24 330-353 240-263 (372)
40 COG1786 Swiveling domain assoc 41.3 81 0.0018 29.0 6.1 73 97-179 47-122 (131)
41 PF06305 DUF1049: Protein of u 33.3 1.6E+02 0.0034 23.1 6.1 55 171-226 2-58 (68)
42 COG5540 RING-finger-containing 30.4 19 0.00042 37.6 0.4 33 104-136 150-182 (374)
43 PF03606 DcuC: C4-dicarboxylat 27.5 1.7E+02 0.0036 32.4 7.1 48 423-471 414-463 (465)
44 cd03028 GRX_PICOT_like Glutare 22.5 1.8E+02 0.0039 24.3 4.9 69 100-173 7-87 (90)
45 PRK11588 hypothetical protein; 21.6 1.9E+02 0.0041 32.6 6.1 43 244-286 280-323 (506)
No 1
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=100.00 E-value=1.9e-128 Score=1002.47 Aligned_cols=501 Identities=51% Similarity=0.882 Sum_probs=475.2
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCeEEEEeeeeecCCCceeEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCCCC
Q 009810 19 CLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNK 98 (525)
Q Consensus 19 ~~~~~~d~~~~d~~~~~~p~c~n~f~lvkv~~wv~g~~~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~~ 98 (525)
....++|..|+|+..|+.|||+|+||++|+++|+||++..++.+..++||..++...+.+...+++.++|.|.|+++.+.
T Consensus 14 ~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k 93 (541)
T KOG2442|consen 14 SFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK 93 (541)
T ss_pred heEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc
Confidence 56688999999999999999999999999999999999999999999999999888877777788889999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEE
Q 009810 99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSV 178 (525)
Q Consensus 99 l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V 178 (525)
++++++++.||+|+|++|+++||++||.|++|+||.+++..|.|.+.++..+++||++||++++|+++.+....|++|++
T Consensus 94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~ 173 (541)
T KOG2442|consen 94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL 173 (541)
T ss_pred ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred EEecCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCccccccCCCCCCceeecccceehhhhHH
Q 009810 179 QLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIA 258 (525)
Q Consensus 179 ~l~~p~~p~vD~s~~~L~lmAv~tI~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~F~v~a 258 (525)
++|+|++|.+|++++++|+|||+||.+|+|||++++||+..|+++.++|..+++.+.+|++|++.+++|+..|+.|++++
T Consensus 174 ~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~~ 253 (541)
T KOG2442|consen 174 ALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVTA 253 (541)
T ss_pred EEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhhh
Confidence 99999999999999999999999999999999999999998999888877777667788889999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCceeeecccccccceeccccchhhhhheeee
Q 009810 259 SCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWA 338 (525)
Q Consensus 259 s~~Ll~ly~f~~~~~~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~w~ 338 (525)
|.+|++||||++ |++|+++++|||+|+.|||+|+.++++ |++.+..+.....|..|..+++.+++.++|++|+++|+
T Consensus 254 c~~LvLlyfF~~-~~V~v~iiif~i~g~~gLy~Cl~~lv~--r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~ 330 (541)
T KOG2442|consen 254 CGFLVLLYFFYS-YLVYVLIIIFCIGGAQGLYNCLAALVH--RLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWA 330 (541)
T ss_pred HHHHHHHHHHHH-HHHHHHhhheeecccchHHHHHHHHHh--hhhhhcccccccccccCChhHHHHHHHHhhhheeEEEE
Confidence 999999999997 499999999999999999999999999 77665555555677888999999999999999999999
Q ss_pred eeecccchhhhccee----------eEeccchhhHHHHHHHHHHHhhhheeecccccc--cceEEEeeccCCCCCCCCCE
Q 009810 339 VYRRISFAWIGQDIL----------IVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFH--ESVMIVVARGDRSGEDGIPM 406 (525)
Q Consensus 339 ~~~~~~~~Wi~~nil----------~~~l~s~k~~~ilL~~lf~YDifwVF~sp~~f~--~sVMv~VA~~~~~~~~~~P~ 406 (525)
++||++|+|++||+| .+|+||+|++++||+++|+|||||||+||++|| ||||++||+|.++++|++||
T Consensus 331 v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~EkiPM 410 (541)
T KOG2442|consen 331 VFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEEKIPM 410 (541)
T ss_pred EeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCCCcce
Confidence 999999999999999 799999999999999999999999999999998 99999999999999999999
Q ss_pred EEEecccc-----CCCCCcccccccccchhhHHHHHHHHHhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 009810 407 LLKIPRLF-----DPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQP 481 (525)
Q Consensus 407 ~l~~P~~~-----~~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QP 481 (525)
+|++||++ ++|++|||||||||++||++||||+|||...++. ++.||.|+++||++||++||+|+++| +.|||
T Consensus 411 lLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~-~~iYfv~~tvaYgiGLlvTfvaL~LM-~~GQP 488 (541)
T KOG2442|consen 411 LLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSV-SNIYFVWSTVAYGIGLLVTFVALVLM-KGGQP 488 (541)
T ss_pred EEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhcccc-ceeEEehhHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 99999999 8899999999999999999999999999998875 78999999999999999999999999 66999
Q ss_pred eeeehhhhhhhHHHHHHhhhchHhhhhccCCCCCCCCcCCCCC
Q 009810 482 ALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPERACPHIQLQS 524 (525)
Q Consensus 482 ALlylvP~~l~~~~~~a~~rgel~~lw~~~~~~~~~~~~~~~~ 524 (525)
||||||||||++.+++|++|||++++|+|...+..|+|.+.++
T Consensus 489 ALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~~~~~~~~~p 531 (541)
T KOG2442|consen 489 ALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQKMPAPNDLNP 531 (541)
T ss_pred eEEEEechHHHHHHHHHHHHHHHHHHhccCCcccCCCCCcCCC
Confidence 9999999999999999999999999999999999888765543
No 2
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-64 Score=505.22 Aligned_cols=294 Identities=32% Similarity=0.528 Sum_probs=246.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCccccccCCCCCCceeecccceeh-hhhHHHHHHHHH
Q 009810 187 VVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVS-FVVIASCFLVML 265 (525)
Q Consensus 187 ~vD~s~~~L~lmAv~tI~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~-F~v~as~~Ll~l 265 (525)
..+.+.+.+.+||+.+|++|++||+...+|. +++++..+.++.++|.. ||++|||+|++|
T Consensus 22 ~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~-------------------~d~~~~~es~t~~~a~~~fPi~~s~tLl~l 82 (362)
T KOG2443|consen 22 LLASAYVSLILIALLLIVIGSFRSLNYIKEN-------------------EDKKDKSESITKRDAGKMFPIIGSCTLLLL 82 (362)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHhhhhhhh-------------------hcccchhhhhhhhhhcccCCcccchHHHHH
Confidence 4778889999999999999999998766541 11124555678888887 999999999999
Q ss_pred HHHhHHH---HHHHHHHHHHHHhHHHHHHHHHHHHhc--cccccc---------CCCceeeecccccccceeccccchhh
Q 009810 266 YKLMSFW---FIEVLVVLFCIGGVEGLQTCVVALLSC--FRWFQH---------AGDSFIKVPFFGAVSYLTLAVCPFCI 331 (525)
Q Consensus 266 y~f~~~~---~~~~l~~~f~i~g~~~l~~~l~~~~~~--~~~~~~---------~~~~~~~~p~~~~~~~~~l~~~~~~~ 331 (525)
|++++.. ..++++.||++.|+.++.+.+.|++.- ....|. ....+.+.-+.++++..+++.+..|.
T Consensus 83 yl~fk~ls~~~~~ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~ 162 (362)
T KOG2443|consen 83 YLLFKPLSKELINLLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPGEKKEFICNGKFTRAQIVALVLSS 162 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCCcccceeecccccHHHHHHHHHHH
Confidence 9987543 234788999999999999999998861 001111 11122222335678888899999999
Q ss_pred hhheeeeeeecccchhhhccee----------eEeccchhhHHHHHHHHHHHhhhheeecccccccceEEEeeccCCCCC
Q 009810 332 AFSVVWAVYRRISFAWIGQDIL----------IVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGE 401 (525)
Q Consensus 332 ~~~~~w~~~~~~~~~Wi~~nil----------~~~l~s~k~~~ilL~~lf~YDifwVF~sp~~f~~sVMv~VA~~~~~~~ 401 (525)
.+++.|++++| |++||++ ++||||+|+|++||.|+|+|||||||+ ++|||+|||+.|
T Consensus 163 ~i~v~~ll~~H----Wl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFg------TnVMVtVAt~~D--- 229 (362)
T KOG2443|consen 163 MIVVWYLLTKH----WLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFG------TNVMVTVATSLD--- 229 (362)
T ss_pred HHHHHHHhhhH----HHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEec------CceEEEeecccC---
Confidence 99999999985 9999999 899999999999999999999999996 469999999965
Q ss_pred CCCCEEEEeccccCCC----CCcccccccccchhhHHHHHHHHHhhhcccc-CCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 009810 402 DGIPMLLKIPRLFDPW----GGYSVIGFGDIILPGLIVAFSLRYDWLMKKN-FRSGYFVWAMTAYGLGLLITYVALNLMD 476 (525)
Q Consensus 402 ~~~P~~l~~P~~~~~~----~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~-~~~~YF~~~~~~Y~~GL~~t~~~~~~~~ 476 (525)
+|+||++|+..... .+||||||||||+||+|+|+++|||.++++. ..+.||..+++||++||+.|+++|+.+
T Consensus 230 --~PikL~fP~~l~~~~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~t~i~Y~~gL~~ti~~~~~F- 306 (362)
T KOG2443|consen 230 --APIKLVFPQKLLFPGLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHNTFIAYFLGLLTTIVVLHIF- 306 (362)
T ss_pred --CceEEecchhhccCCCccccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEEeHHHHHhhhHHHhhhhhhh-
Confidence 89999999976542 3599999999999999999999999876542 457899999999999999999999999
Q ss_pred cCCcceeeehhhhhhhHHHHHHhhhchHhhhhccCCCCC
Q 009810 477 GHGQPALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPER 515 (525)
Q Consensus 477 ~~~QPALlylvP~~l~~~~~~a~~rgel~~lw~~~~~~~ 515 (525)
+++||||||+||+|+++.+++|++|||++.+|+++++..
T Consensus 307 kaAQPALLYlVP~~l~~~ll~A~~~gdlk~l~s~~~~~~ 345 (362)
T KOG2443|consen 307 KAAQPALLYLVPACLGPLLLMAYWRGDLKVLWSFDESTK 345 (362)
T ss_pred hccchhhhhhhHHHHhHHHHHHHHccchHhhhCccccCC
Confidence 999999999999999999999999999999999988543
No 3
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.
Probab=100.00 E-value=5.4e-66 Score=527.92 Aligned_cols=264 Identities=43% Similarity=0.777 Sum_probs=1.0
Q ss_pred CCCceeecccceehhhhHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhHHHHHHHHHHHHhcccccc-----cCCC
Q 009810 240 SNGFVDINMASAVSFVVIASCFLVMLYKLMSFWF------IEVLVVLFCIGGVEGLQTCVVALLSCFRWFQ-----HAGD 308 (525)
Q Consensus 240 ~~~~~~i~~~~a~~F~v~as~~Ll~ly~f~~~~~------~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~-----~~~~ 308 (525)
|++.+++|.+||++||++||++|++||++++++. +++++.+|+++|+.++..++.+.+. +.++ +...
T Consensus 2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~--~~~~~~~~~~~~~ 79 (298)
T PF04258_consen 2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLT--YIFPFFPCRSFPW 79 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcccccccccc
Confidence 4567789999999999999999999999987654 4689999999999998777776655 3222 1122
Q ss_pred ceeee--------cccccccceeccccchhhhhheeeeeeecccchhhhccee----------eEeccchhhHHHHHHHH
Q 009810 309 SFIKV--------PFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDIL----------IVRVPNLKVGTVLLSCA 370 (525)
Q Consensus 309 ~~~~~--------p~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~Wi~~nil----------~~~l~s~k~~~ilL~~l 370 (525)
.++++ ++.++++..++++.++|+++++.|+++|++ +|++||++ .+|+||+|++++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~--~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~l 157 (298)
T PF04258_consen 80 KKWKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNE--HWILQNILGICFCINIISLIRLPSFKTATILLIGL 157 (298)
T ss_dssp -----------------------------------S--------------------------------------------
T ss_pred ceEEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccc--hHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHH
Confidence 23333 455678888999999999999999998876 59999999 79999999999999999
Q ss_pred HHHhhhheeecccccccceEEEeeccCCCCCCCCCEEEEeccccC----CCCCcccccccccchhhHHHHHHHHHhhhcc
Q 009810 371 FLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFD----PWGGYSVIGFGDIILPGLIVAFSLRYDWLMK 446 (525)
Q Consensus 371 f~YDifwVF~sp~~f~~sVMv~VA~~~~~~~~~~P~~l~~P~~~~----~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~ 446 (525)
|+|||||||+||++||+|||++|||+..++++++|+|+++|+..+ ..++|||||+||||+||+|+++|+|||+.++
T Consensus 158 f~YDif~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~ 237 (298)
T PF04258_consen 158 FLYDIFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRN 237 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhc
Confidence 999999999999999999999999994445578899999999863 4688999999999999999999999999984
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHhhccCCcceeeehhhhhhhHHHHHHhhhchHhhhhc
Q 009810 447 KNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWT 509 (525)
Q Consensus 447 ~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALlylvP~~l~~~~~~a~~rgel~~lw~ 509 (525)
++ ++.||.++++||++||++|+++++++ ++||||||||||+|+++++++|++|||++++|+
T Consensus 238 ~~-~~~Yf~~~~~~Y~~Gl~~t~~~~~~~-~~~QPALlylvP~~l~~~~~~a~~r~el~~~w~ 298 (298)
T PF04258_consen 238 KS-RKPYFIASLIGYALGLLLTFVALHLF-KHGQPALLYLVPCTLGSVLLVAWIRGELKDFWN 298 (298)
T ss_dssp ---------------------------------------------------------------
T ss_pred cc-cchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCeehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence 32 46799999999999999999999999 899999999999999999999999999999997
No 4
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=100.00 E-value=5.2e-48 Score=385.54 Aligned_cols=232 Identities=38% Similarity=0.613 Sum_probs=202.6
Q ss_pred eeecccceehhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCceeeeccccccccee
Q 009810 244 VDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLT 323 (525)
Q Consensus 244 ~~i~~~~a~~F~v~as~~Ll~ly~f~~~~~~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 323 (525)
+.+|+++++.||+++|++|++||++++.+ +..+.++|+++|+.+++.++.+... .. .+..+
T Consensus 3 ~~~n~~~~i~fii~~s~~Ll~Ly~~~~~~-~i~~~~~f~~~~~~~~~~~~~~~~~--~~----------------~~~~~ 63 (249)
T smart00730 3 SLLNSLVAIVFPIVATFVLVLLYKFFKYL-VIVLVIYFSSLGVLFLYSLLYPLEV--FR----------------VDYPT 63 (249)
T ss_pred ccccHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------HhHHH
Confidence 45789999999999999999999999876 8888999999999999988876654 11 22344
Q ss_pred ccccchhhhhheeeeeeecccchhhhccee----------eEeccchhhHHHHHHHHHHHhhhheeecccccccceEEEe
Q 009810 324 LAVCPFCIAFSVVWAVYRRISFAWIGQDIL----------IVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVV 393 (525)
Q Consensus 324 l~~~~~~~~~~~~w~~~~~~~~~Wi~~nil----------~~~l~s~k~~~ilL~~lf~YDifwVF~sp~~f~~sVMv~V 393 (525)
.+...++++++.+|.+++| ++|+.||++ .+|+||+|++++||+++++||+||||+||. +++||++|
T Consensus 64 ~~~~~~~~~v~~~~~~~~~--~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~--~~~vMv~v 139 (249)
T smart00730 64 LLILLLNFAVVGFWCIHRK--GAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEV 139 (249)
T ss_pred HHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCC--CchHHhhH
Confidence 5566778888889998886 789999999 689999999999999999999999999997 89999999
Q ss_pred eccCCCCCCCCCEEEEeccc-----cCCCCCcccccccccchhhHHHHHHHHHhhhccccCCcchhHHHHHHHHHHHHHH
Q 009810 394 ARGDRSGEDGIPMLLKIPRL-----FDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLIT 468 (525)
Q Consensus 394 A~~~~~~~~~~P~~l~~P~~-----~~~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t 468 (525)
|++.+...|.+|+++..||. .+..+++++||+||||+||+++++|+|||...++ +..||..+++||.+||++|
T Consensus 140 A~~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~--~~~yf~~~~~ay~~GL~~t 217 (249)
T smart00730 140 ATGRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRS--DSNYFLACFVAYGIGLILT 217 (249)
T ss_pred hccCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccC--CcccHHHHHHHHHHHHHHH
Confidence 99976332468999999984 2234689999999999999999999999987543 4689999999999999999
Q ss_pred HHHHHhhccCCcceeeehhhhhhhHHHHHHhhh
Q 009810 469 YVALNLMDGHGQPALLYIVPFTLGTFLTLGKKR 501 (525)
Q Consensus 469 ~~~~~~~~~~~QPALlylvP~~l~~~~~~a~~r 501 (525)
+++++.+ ++|||||+|+||+++++.++.|+.|
T Consensus 218 ~~~l~~~-~~aqPALlylvp~~l~~~~~~~~~r 249 (249)
T smart00730 218 LVLLALF-KKAQPALPYLVPFTLVFYLLTALLR 249 (249)
T ss_pred HHHHHHh-CCCCccHHHHHHHHHHHHHHHHHhC
Confidence 9999999 8999999999999999999999876
No 5
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.96 E-value=3.1e-29 Score=230.18 Aligned_cols=139 Identities=53% Similarity=0.895 Sum_probs=127.1
Q ss_pred CeEEEEeeeeecCCCceeEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCCCCCCCcEEEEecCCCCHHHHHHHHH
Q 009810 42 NFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAE 121 (525)
Q Consensus 42 ~f~lvkv~~wv~g~~~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq 121 (525)
+|+||++.+|++|++.++|.+.+|+||..+|++..++.+++++.++|.++|++.+++++|+|+||+||+|+|.+|++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~~~~g~IvLV~RG~C~F~~K~~nA~ 80 (139)
T cd02132 1 PFQLVKVQNWVDGDEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSKLSGSIALVERGECAFTEKAKIAE 80 (139)
T ss_pred CceEEEeeeccCCccccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCcccCCeEEEEECCCCCHHHHHHHHH
Confidence 48999999999999999999999999999998877788999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 122 EANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 122 ~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
++||+++||||+.+++..|.+.++++..+++||+++|++++|++|++.+++|++|++++
T Consensus 81 ~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 81 AGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred HcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 99999999999987777776543344456899999999999999999999999998864
No 6
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.89 E-value=4.5e-23 Score=184.48 Aligned_cols=116 Identities=22% Similarity=0.379 Sum_probs=98.2
Q ss_pred eEEEEeeeeecCCCceeEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC---CCCCCcEEEEecCCCCHHHHHHH
Q 009810 43 FVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK---NKLTGEAILVHRGGCSFTAKANF 119 (525)
Q Consensus 43 f~lvkv~~wv~g~~~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~n 119 (525)
|++.++++|. .+|++.+++...|++.++|..||++.+ .+++|+|+||+||+|+|.+|++|
T Consensus 1 ~~~~~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~ 63 (120)
T cd02129 1 YCILYNSQWA-----------------SLPSDLDKATLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARL 63 (120)
T ss_pred CcEEECCcce-----------------ECCcchhhCcceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHH
Confidence 6889999995 689888888999999999999999887 47899999999999999999999
Q ss_pred HHHcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEE
Q 009810 120 AEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQ 179 (525)
Q Consensus 120 Aq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~ 179 (525)
||++||+|+|||||++.. .+.. +.+...+++||++||++++|++|++.+. +.|+|+
T Consensus 64 Aq~aGA~aVII~nn~~~~-~~~~-~~~~~~~v~IP~v~Is~~dG~~i~~~l~--~~~~v~ 119 (120)
T cd02129 64 AQSLGAEGLLIVSRERLV-PPSG-NRSEYEKIDIPVALLSYKDMLDIQQTFG--DSVKVA 119 (120)
T ss_pred HHHCCCCEEEEEECCCCC-CCCC-CCCCCcCCcccEEEEeHHHHHHHHHHhc--cCcEEe
Confidence 999999999999997642 2221 1222467899999999999999999996 445554
No 7
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=2e-22 Score=182.11 Aligned_cols=116 Identities=31% Similarity=0.515 Sum_probs=98.3
Q ss_pred eeecCCCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc---
Q 009810 62 GVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--- 136 (525)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~--~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~--- 136 (525)
+.+|+||.++|+.. ...++|+.++|.++|++.++ +++|||+||+||+|+|.+|+++||++||+|+|||||.++
T Consensus 2 ~~pa~FG~~~~~~~--~~~g~l~~~~p~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~ 79 (126)
T cd02126 2 AGPAQFGMDLTGDK--AGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSS 79 (126)
T ss_pred CCCcccCCcCCCCC--CceEEEEeCCchhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 46899999999753 36789999999999998874 689999999999999999999999999999999987653
Q ss_pred ----ccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 137 ----LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 137 ----l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
.+.|.+.. +...+++||+++|++++|++|++.+++|.+|++++
T Consensus 80 ~~~~~~~m~~~~-~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 80 DTAPMFAMSGDG-DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred cccceeEeecCC-CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 34565431 12346899999999999999999999999998864
No 8
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=2.6e-21 Score=173.04 Aligned_cols=110 Identities=28% Similarity=0.502 Sum_probs=93.8
Q ss_pred CCCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc----ccc
Q 009810 66 RFGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE----LFK 139 (525)
Q Consensus 66 ~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~--~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~----l~~ 139 (525)
.||..++.+ +..++|+.++|.+||++.++ +++|+|+||+||+|+|.+|++|||++||+|+||||+.++ .+.
T Consensus 1 ~~~~~~~~~---~~~~~lv~~~p~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~ 77 (118)
T cd02127 1 DFGTIFNTR---YKHVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVE 77 (118)
T ss_pred CCCcccccc---ccceEEEECCccccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceE
Confidence 488888876 45679999999999998763 789999999999999999999999999999999998643 345
Q ss_pred cccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 140 MVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 140 M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
|.+. +...+++||+++|++++|+.|++.+++|..+++.+
T Consensus 78 m~~~--~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 78 MIQD--DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred ecCC--CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEee
Confidence 6653 23457899999999999999999999999887654
No 9
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.86 E-value=2.6e-21 Score=175.17 Aligned_cols=112 Identities=29% Similarity=0.430 Sum_probs=92.1
Q ss_pred CCCCccccccCCceeEEEEec-CCCCCCCCCCC---------CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q 009810 66 RFGRTLEAKEKDASQNRLVLA-DPPDCCSKPKN---------KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKT 135 (525)
Q Consensus 66 ~FG~~lp~~~~~~~~~~Lv~~-~p~daC~~~~~---------~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~ 135 (525)
+||.+ |+.. ...+.|+.+ ++.++|++.+. ..+++|+||+||+|+|.+|++|||++||+++||||+.+
T Consensus 1 ~FG~~-~yg~--~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~ 77 (127)
T cd02125 1 NFGLP-QYGG--TLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD 77 (127)
T ss_pred CCCCC-CcCC--eeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence 58854 4443 366777776 67899998763 36789999999999999999999999999999999977
Q ss_pred c-ccccccCCC----CCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 136 E-LFKMVCESN----ETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 136 ~-l~~M~~~~~----~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
+ ++.|.++++ +...+++||+++|++++|++|++.+++|++|+|++
T Consensus 78 ~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 78 EPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred CccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 5 567765322 12357899999999999999999999999999875
No 10
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.86 E-value=7.1e-21 Score=177.55 Aligned_cols=116 Identities=26% Similarity=0.418 Sum_probs=99.8
Q ss_pred CceeEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC------CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEE
Q 009810 56 EDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK------NKLTGEAILVHRGGCSFTAKANFAEEANASAIL 129 (525)
Q Consensus 56 ~~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~------~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avI 129 (525)
+..++.+..|+||...+. ++.+++|+.++|.+||++.+ +..+|+|+||+||+|+|.+|++|||++||+|+|
T Consensus 20 ~~~~~~~~~A~FG~~~~~---~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avI 96 (153)
T cd02123 20 LTDEFDDLPANFGPIPPG---SGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAI 96 (153)
T ss_pred ccceEeeecccCCCCCCC---CceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEE
Confidence 567899999999987764 35788999999999999876 478899999999999999999999999999999
Q ss_pred EEeCCCc-ccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcE
Q 009810 130 IINNKTE-LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSV 175 (525)
Q Consensus 130 V~N~~~~-l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 175 (525)
|||++++ +..|.+.+. ...+++||+++|++++|+.|++.+++++.
T Consensus 97 I~n~~~~~~~~m~~~~~-~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 97 VYNDESNDLISMSGNDQ-EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EEECCCCcceeccCCCC-CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9998754 667765422 22578999999999999999999998877
No 11
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.85 E-value=1.7e-20 Score=172.12 Aligned_cols=110 Identities=26% Similarity=0.389 Sum_probs=92.2
Q ss_pred eecCCCCccccccCCceeEEEEec---CCCCCCCCCCC-----CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 009810 63 VGARFGRTLEAKEKDASQNRLVLA---DPPDCCSKPKN-----KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK 134 (525)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~---~p~daC~~~~~-----~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~ 134 (525)
..|+||.++|.+. ..+.|+.. ++.+||++.++ +++|+||||+||+|+|.+|++|||++||+++||||+.
T Consensus 18 ~~a~fg~~~~~~~---~~G~l~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~ 94 (138)
T cd02122 18 ESGRYGEHSPKEE---AKGLVVVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNP 94 (138)
T ss_pred cccccCCCCCCCc---cEEEEecCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 5899999888764 56667654 45899998764 5889999999999999999999999999999999997
Q ss_pred C-c--ccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 135 T-E--LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 135 ~-~--l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
+ . .+.|... ...+||+++|++++|++|++.+++|++|++++
T Consensus 95 ~~~~~~~~m~~~-----~~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 95 GTGNETVKMSHP-----GTGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCceeeccCC-----CCCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 6 2 5566542 12478999999999999999999999998864
No 12
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.80 E-value=3.4e-19 Score=158.60 Aligned_cols=114 Identities=32% Similarity=0.481 Sum_probs=98.3
Q ss_pred eecCCCCccccccCCceeEEEEecCCCCCCCCCC--CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc--cc
Q 009810 63 VGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK--NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--LF 138 (525)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~--~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~--l~ 138 (525)
++|+||+.++........++++.+++.++|++.. ++++|||+|++||+|+|.+|+++|+++||+|+|+||+.++ .+
T Consensus 1 ~~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~ 80 (118)
T cd04818 1 VSAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPI 80 (118)
T ss_pred CCcccCCcCccccccceeEEEecCCcccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcce
Confidence 4799999998754445889999999999999876 5799999999999999999999999999999999998764 44
Q ss_pred ccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 139 KMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 139 ~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
.|... .....||+++|++++|++|++.+++|++|++++
T Consensus 81 ~~~~~----~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 81 TMGGD----DPDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred eccCC----CCCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 55432 134679999999999999999999999998875
No 13
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.80 E-value=2.7e-19 Score=159.89 Aligned_cols=103 Identities=26% Similarity=0.479 Sum_probs=84.9
Q ss_pred eeecCCCCccccccCCceeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc--cc
Q 009810 62 GVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--LF 138 (525)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~--l~ 138 (525)
++.|+||+.+....++. ..++|.++|++.+ ++++|+|+||+||+|+|.+|++|||++||+++||||+.++ +.
T Consensus 5 ~~~~~~~~~~~~~~~~~-----~~~~p~~gC~~~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~ 79 (117)
T cd04813 5 GRYASFSPILNPHLRGS-----YKVSPTDACSLQEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLI 79 (117)
T ss_pred ccccccCCccCcccccc-----ccCCCCCCCCCCCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccce
Confidence 47899998877654321 2378899999886 5899999999999999999999999999999999998753 55
Q ss_pred ccccCCCCCCCcccceEEEechhhhHhHHHHhh
Q 009810 139 KMVCESNETDVDIRIPAIMLPQDAGANLEKLIK 171 (525)
Q Consensus 139 ~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (525)
.|.+. +...+++||+++|++++|+.|++++.
T Consensus 80 ~m~~~--~~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 80 TMFSN--GDTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred ecccC--CCCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 66653 22467899999999999999998763
No 14
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.77 E-value=3.9e-18 Score=152.94 Aligned_cols=113 Identities=24% Similarity=0.470 Sum_probs=90.8
Q ss_pred eecCCCCccccccCCceeEEEEecCC--CCCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc
Q 009810 63 VGARFGRTLEAKEKDASQNRLVLADP--PDCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL 137 (525)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~~p--~daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l 137 (525)
+...|++..|. ++++++++..++ .++|++.+ .+++|||+|++||+|+|.+|++|||++||+|+|+||+.++.
T Consensus 4 ~~~~~~~~~~~---~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~ 80 (122)
T cd04816 4 VSLSYSPSTPP---GGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGG 80 (122)
T ss_pred EEEeccCCCCC---CCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCc
Confidence 34567766664 368889998765 59999865 47999999999999999999999999999999999987642
Q ss_pred -cccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 138 -FKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 138 -~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
..+.- .+......||+++|++++|++|++.+++|++|++++
T Consensus 81 ~~~~~~--~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 81 GTAGTL--GAPNIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred cccccc--cCCCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 11111 111245789999999999999999999999998864
No 15
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.74 E-value=2.4e-17 Score=147.72 Aligned_cols=113 Identities=23% Similarity=0.347 Sum_probs=88.8
Q ss_pred eeEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC--CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC-
Q 009810 58 TEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK--NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK- 134 (525)
Q Consensus 58 ~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~--~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~- 134 (525)
..|...+..|.+. . +.+++++.. +.++|++.+ .+++|||+||+||+|+|.+|++|||++||+++||||+.
T Consensus 7 ~~~~~~~~~~~~~---~---~~~g~lv~~-~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 7 EAIPTTAFTYSPA---G---EVTGPLVVV-PNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEEeeeecccCCC---C---CcEEEEEEe-CCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 4555555555533 2 356888886 478999755 47999999999999999999999999999999999987
Q ss_pred CcccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 135 TELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 135 ~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
++...... ....+..||+++|++++|+.|++.+++|++|+++|
T Consensus 80 ~~~~~~~~---~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 80 AGGLSGTL---GEPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred Cccccccc---CCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 33322111 12235789999999999999999999999999875
No 16
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.68 E-value=4.7e-16 Score=142.84 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=76.6
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCCcEEEEecCCCC-----HHHHHHHHHHcCCcEEEEEeCC--Cccc-ccccCCCCCC
Q 009810 77 DASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCS-----FTAKANFAEEANASAILIINNK--TELF-KMVCESNETD 148 (525)
Q Consensus 77 ~~~~~~Lv~~~p~daC~~~~~~l~g~IaLV~RG~Cs-----F~~Ka~nAq~aGA~avIV~N~~--~~l~-~M~~~~~~~~ 148 (525)
+..+++|+...... |+....+++|||+||+||+|+ |.+|++|||++||+|+|||||. ++.+ .+.+. ..
T Consensus 34 g~~tg~lv~~g~~g-~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~---~~ 109 (139)
T cd04817 34 GSATGSLYYCGTSG-GSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVD---TN 109 (139)
T ss_pred CcceEEEEEccCCC-ccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccC---CC
Confidence 45678998887443 855456899999999999999 9999999999999999999998 4433 22221 12
Q ss_pred CcccceEEEechhhhHhHHHHhhcCcEE
Q 009810 149 VDIRIPAIMLPQDAGANLEKLIKNNSVV 176 (525)
Q Consensus 149 ~~i~IPvv~Is~~~G~~L~~~L~~g~~V 176 (525)
.+++||+++|++++|++|++.+.++.+|
T Consensus 110 ~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 110 NDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 3689999999999999999999665554
No 17
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.68 E-value=2.7e-16 Score=142.91 Aligned_cols=89 Identities=28% Similarity=0.358 Sum_probs=73.1
Q ss_pred cCCCCCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhh
Q 009810 86 ADPPDCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDA 162 (525)
Q Consensus 86 ~~p~daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~ 162 (525)
+++.+||++.+ .+++|+|+||+||+|+|.+|++|||++||+++||||+.++...+... ....+|.+.+ +++
T Consensus 38 ~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~-----~~~~~~~~~~-~~~ 111 (129)
T cd02124 38 SVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGS-----DADSIIAAVT-PED 111 (129)
T ss_pred CCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCC-----CCcceeeEEe-HHH
Confidence 35789999875 46899999999999999999999999999999999998765444321 1234555555 999
Q ss_pred hHhHHHHhhcCcEEEEEE
Q 009810 163 GANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 163 G~~L~~~L~~g~~V~V~l 180 (525)
|++|++.+++|++|+++|
T Consensus 112 G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 112 GEAWIDALAAGSNVTVDF 129 (129)
T ss_pred HHHHHHHHhcCCeEEEeC
Confidence 999999999999999875
No 18
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-15 Score=156.25 Aligned_cols=110 Identities=27% Similarity=0.427 Sum_probs=92.0
Q ss_pred eeEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCCC------CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEE
Q 009810 58 TEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN------KLTGEAILVHRGGCSFTAKANFAEEANASAILII 131 (525)
Q Consensus 58 ~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~------~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~ 131 (525)
-+|.+.+|.||+.++.+ +..+-++.++|.+||++..+ .-..+++||+||+|+|.+|++|||++|++|+|||
T Consensus 34 ~sf~d~~a~f~~s~~~e---~~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 34 LSFADLPALFGPSLPSE---GNLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred ccccCCccccCCccccc---cceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 37999999999998876 46778899999999999753 4567899999999999999999999999999999
Q ss_pred eCCCc--ccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCc
Q 009810 132 NNKTE--LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNS 174 (525)
Q Consensus 132 N~~~~--l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~ 174 (525)
||... +..|.. + ..++.|++++++...|+.|.+...++.
T Consensus 111 nn~~~~~lv~~~~--~--~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 111 NNVGSEDLVAMAS--N--PSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred cCCCCchheeecc--C--CccceeEEEEEeeehHHHHHHhhcccc
Confidence 98643 555532 2 357999999999999999999654433
No 19
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.54 E-value=7e-15 Score=134.90 Aligned_cols=139 Identities=27% Similarity=0.355 Sum_probs=110.4
Q ss_pred CCCCCeEEEEeeeeecCCCceeEEeeecC-CCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHH
Q 009810 38 GCDNNFVLVKVPTWVDGGEDTEYVGVGAR-FGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFT 114 (525)
Q Consensus 38 ~c~n~f~lvkv~~wv~g~~~~~~~~~~A~-FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~--~l~g~IaLV~RG~CsF~ 114 (525)
--..++.+..+- .++....+|+..+|. ||...|++-. ..++|.++|+.||+.+.| ...|.|+|++||+|+|.
T Consensus 27 v~~qD~~~F~vl--sP~~l~Yty~~~pAkdfG~~F~~r~e---~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl 101 (193)
T KOG3920|consen 27 VENQDNMLFTVL--SPYTLAYTYQMKPAKDFGVHFPDRFE---NLELVLADPPHACEELRNEIFAPDSVALMERGECSFL 101 (193)
T ss_pred eeecceEEEEec--CcccEEEEEEecchhhhccccchhhc---CcceeecCChhHHHHHhhcccCCCcEEEEecCCceee
Confidence 333344443332 456678889999998 9999998753 468999999999999875 67899999999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCc------ccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEEecC
Q 009810 115 AKANFAEEANASAILIINNKTE------LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSP 183 (525)
Q Consensus 115 ~Ka~nAq~aGA~avIV~N~~~~------l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l~~p 183 (525)
.|.+|+|++||.++||-++... .++|.. +++.++-+||++++-..+|-.++..|++-..+...+.-|
T Consensus 102 ~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~--D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 102 VKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIP--DESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred ehhhhhhhcCceEEEEecCCCCchhHHHHHHhcC--cccccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 9999999999999999876532 457875 345577899999999999999999988866655555444
No 20
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.51 E-value=2.5e-14 Score=122.52 Aligned_cols=91 Identities=29% Similarity=0.445 Sum_probs=65.3
Q ss_pred ceeEEEEecCC---CCCCCCC---CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcc
Q 009810 78 ASQNRLVLADP---PDCCSKP---KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDI 151 (525)
Q Consensus 78 ~~~~~Lv~~~p---~daC~~~---~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i 151 (525)
..+++||...+ ...|.+. ..+++|||+|++||+|+|.+|+++||++||+|+||+|+.+....+.. .....+.
T Consensus 5 ~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~--~~~~~~~ 82 (101)
T PF02225_consen 5 TVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMID--SEDPDPI 82 (101)
T ss_dssp EEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTC--EBTTTST
T ss_pred CEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCccc--ccCCCCc
Confidence 35778884432 2233222 26899999999999999999999999999999999993322222211 1224568
Q ss_pred cceEEEechhhhHhHHHHh
Q 009810 152 RIPAIMLPQDAGANLEKLI 170 (525)
Q Consensus 152 ~IPvv~Is~~~G~~L~~~L 170 (525)
.||+++|++++|++|++++
T Consensus 83 ~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 83 DIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp BSEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhhccC
Confidence 9999999999999999864
No 21
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.50 E-value=8.6e-14 Score=123.55 Aligned_cols=94 Identities=32% Similarity=0.490 Sum_probs=75.4
Q ss_pred cCCCCCCCCCC-----CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc-ccccccCCCCCCCcccceEEEec
Q 009810 86 ADPPDCCSKPK-----NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE-LFKMVCESNETDVDIRIPAIMLP 159 (525)
Q Consensus 86 ~~p~daC~~~~-----~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~-l~~M~~~~~~~~~~i~IPvv~Is 159 (525)
..+.++|++.. .+++|||+|++||+|+|.+|+++||++||+|+|++|+.+. ...|... .+...+..||+++|+
T Consensus 27 ~~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~-~~~~~~~~iP~~~is 105 (126)
T cd00538 27 AGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSV-GLESTDPSIPTVGIS 105 (126)
T ss_pred ccceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccc-cCCCCCCcEeEEEeC
Confidence 35667887753 5799999999999999999999999999999999998763 2222221 111245689999999
Q ss_pred hhhhHhHHHHhhcCcEEEEEE
Q 009810 160 QDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 160 ~~~G~~L~~~L~~g~~V~V~l 180 (525)
+++|++|++++++|++|++++
T Consensus 106 ~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 106 YADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred HHHHHHHHHHHhcCCceEEeC
Confidence 999999999999999888763
No 22
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.40 E-value=3.3e-12 Score=117.69 Aligned_cols=94 Identities=21% Similarity=0.324 Sum_probs=72.1
Q ss_pred ceeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccceEE
Q 009810 78 ASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAI 156 (525)
Q Consensus 78 ~~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv 156 (525)
+.+++++.+.... .++.. .+++|||+|++||+|+|.+|+++||++||+|+|+||+.+....|... ....||++
T Consensus 25 ~~~~~lv~~g~g~-~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~-----~~~~iP~v 98 (143)
T cd02133 25 GKTYELVDAGLGT-PEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLG-----EAVFIPVV 98 (143)
T ss_pred CcEEEEEEccCCc-hhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCC-----CCCeEeEE
Confidence 4677888764221 11222 47999999999999999999999999999999999998655444321 13579999
Q ss_pred EechhhhHhHHHHhhcCcEEE
Q 009810 157 MLPQDAGANLEKLIKNNSVVS 177 (525)
Q Consensus 157 ~Is~~~G~~L~~~L~~g~~V~ 177 (525)
+|++++|++|++.+++..+++
T Consensus 99 ~Is~~dG~~L~~~l~~~~~i~ 119 (143)
T cd02133 99 FISKEDGEALKAALESSKKLT 119 (143)
T ss_pred EecHHHHHHHHHHHhCCCeEE
Confidence 999999999999998733333
No 23
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.38 E-value=4e-12 Score=115.06 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=81.5
Q ss_pred eEEeeecCCCCccccccCCceeEEEEecCCCCCCCCC-CCCCCCcEEEEecCCC--CHHHHHHHHHHcCCcEEEEEeCCC
Q 009810 59 EYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKP-KNKLTGEAILVHRGGC--SFTAKANFAEEANASAILIINNKT 135 (525)
Q Consensus 59 ~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~-~~~l~g~IaLV~RG~C--sF~~Ka~nAq~aGA~avIV~N~~~ 135 (525)
++...+-.|.+ .+..+++++.+..... ++. ..+++|||||++||.| +|.+|+++|+++||+|+|++|+.+
T Consensus 9 ~~~~~~~~~s~------~~~~~~~lV~~g~G~~-~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~ 81 (127)
T cd04819 9 AFDAIALPRSP------SGEAKGEPVDAGYGLP-KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVP 81 (127)
T ss_pred eEEEEEcCCCC------CCCeeEEEEEeCCCCH-HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCC
Confidence 35555544542 1235788888752210 111 2469999999999999 999999999999999999999876
Q ss_pred cccccccCC-CCCCCcccceEEEechhhhHhHHHHhhcCcEEEEE
Q 009810 136 ELFKMVCES-NETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQ 179 (525)
Q Consensus 136 ~l~~M~~~~-~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~ 179 (525)
+.+...... ........||++.|++++|++|++++++|++|.+.
T Consensus 82 g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 82 GVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred CcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 532211111 11123468999999999999999999999888763
No 24
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.27 E-value=9.2e-12 Score=113.86 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=78.4
Q ss_pred ccCCceeEEEEecCCCCCCCCC-CCCCCCcEEEEecCCC------CHHHH-------HHHHHHcCCcEEEEEeCCCcccc
Q 009810 74 KEKDASQNRLVLADPPDCCSKP-KNKLTGEAILVHRGGC------SFTAK-------ANFAEEANASAILIINNKTELFK 139 (525)
Q Consensus 74 ~~~~~~~~~Lv~~~p~daC~~~-~~~l~g~IaLV~RG~C------sF~~K-------a~nAq~aGA~avIV~N~~~~l~~ 139 (525)
+..++++++++..+..+.=+.. ..+++|||||++||.| +|.+| .++|+++||.|+|++|+.+....
T Consensus 12 t~~~gvta~vv~v~~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~ 91 (134)
T cd04815 12 TPPEGITAEVVVVKSFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHR 91 (134)
T ss_pred CCCCCcEEEEEEECCHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCC
Confidence 3334578898877532211111 2479999999999999 99999 79999999999999997543211
Q ss_pred cc--cCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 140 MV--CESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 140 M~--~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
+. +..........||++.|+.++|+.|.+++++|++|++++
T Consensus 92 ~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 92 SPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred CCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 11 110111234679999999999999999999999998864
No 25
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.15 E-value=1.6e-10 Score=103.31 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=68.9
Q ss_pred CCCCCCCCC---CCCCCcEEEEecCCC-CHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhh
Q 009810 88 PPDCCSKPK---NKLTGEAILVHRGGC-SFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAG 163 (525)
Q Consensus 88 p~daC~~~~---~~l~g~IaLV~RG~C-sF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G 163 (525)
....|++.. .+++|||+|++||.| +|.+|+++||++||.|+|++|+.++...+.. ....||++.|++++|
T Consensus 36 ~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~------~~~~iP~v~I~~~~g 109 (126)
T cd02120 36 DASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVA------DAHVLPAVHVDYEDG 109 (126)
T ss_pred ccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCceecc------cccccceEEECHHHH
Confidence 457898764 469999999999999 9999999999999999999998765433321 235799999999999
Q ss_pred HhHHHHhhcCcE
Q 009810 164 ANLEKLIKNNSV 175 (525)
Q Consensus 164 ~~L~~~L~~g~~ 175 (525)
+.|+++++++..
T Consensus 110 ~~l~~y~~~~~~ 121 (126)
T cd02120 110 TAILSYINSTSN 121 (126)
T ss_pred HHHHHHHHcCCC
Confidence 999999998654
No 26
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.85 E-value=8.4e-09 Score=98.97 Aligned_cols=92 Identities=25% Similarity=0.267 Sum_probs=67.6
Q ss_pred CceeEEEEecCCCCCCCCC--------CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCccccc--------
Q 009810 77 DASQNRLVLADPPDCCSKP--------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKM-------- 140 (525)
Q Consensus 77 ~~~~~~Lv~~~p~daC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M-------- 140 (525)
+..+++++.++. | .+. ..+++|||+|++||+|++.+|+++||++||+|+|+|||..+...+
T Consensus 27 G~v~g~lVyvn~--G-~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 27 GTVTGKLVYANY--G-RKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred CceEEEEEEcCC--C-CHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 356889998842 2 222 247899999999999999999999999999999999985321110
Q ss_pred ----ccCC---------C-------CCCCcccceEEEechhhhHhHHHHhh
Q 009810 141 ----VCES---------N-------ETDVDIRIPAIMLPQDAGANLEKLIK 171 (525)
Q Consensus 141 ----~~~~---------~-------~~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (525)
...+ + +...-.+||+.=|+..+++.|++.|.
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcC
Confidence 0000 0 00012579999999999999999986
No 27
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=98.73 E-value=6.5e-08 Score=97.51 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=103.7
Q ss_pred hhhhhheeeeeeecccchhhhccee------------eEeccchhhHHHHHHHHHHHhhhheeecccccccceEEEeecc
Q 009810 329 FCIAFSVVWAVYRRISFAWIGQDIL------------IVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARG 396 (525)
Q Consensus 329 ~~~~~~~~w~~~~~~~~~Wi~~nil------------~~~l~s~k~~~ilL~~lf~YDifwVF~sp~~f~~sVMv~VA~~ 396 (525)
.++++....+.+. .|+..|+. -+.+ ++-.+.+||..+=+||..=||.|+ =|++.|.|
T Consensus 98 ~ai~~~~~L~~yp----EWYviD~~Gil~~aG~aaiFGISl-~~lpaiiLL~iLAVYDaISVYkTk------HMltLAeg 166 (283)
T PF06550_consen 98 LAIALTALLYKYP----EWYVIDIAGILMGAGAAAIFGISL-GILPAIILLAILAVYDAISVYKTK------HMLTLAEG 166 (283)
T ss_pred HHHHHHHHHHhcc----hHHHHHHHHHHHHhHHHHHHhhhc-cHHHHHHHHHHHHHhhhhheecch------HHHHHHHH
Confidence 3444443334444 49999988 1333 345678899999999999999776 59999998
Q ss_pred CCCCCCCCCEEEEeccccCC--------------CCCcccccccccchhhHHHHHHHHHhhhccccCCcchh-HHHHHHH
Q 009810 397 DRSGEDGIPMLLKIPRLFDP--------------WGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYF-VWAMTAY 461 (525)
Q Consensus 397 ~~~~~~~~P~~l~~P~~~~~--------------~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~YF-~~~~~~Y 461 (525)
-- +.++|+++++|+-.+- .++--++|+||.++|.++++-+..|.....-.. -.++ +.+++|=
T Consensus 167 v~--d~klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~-~~lpalga~~Gt 243 (283)
T PF06550_consen 167 VM--DLKLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGG-LNLPALGAMLGT 243 (283)
T ss_pred Hh--ccCCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhh-hhHHHHHHHHHH
Confidence 53 2579999999985321 122358999999999999999999876533100 0121 3345555
Q ss_pred HHHHHHHHHHHHhhccCCcceeeehhhhhhhHHHHHHh
Q 009810 462 GLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGK 499 (525)
Q Consensus 462 ~~GL~~t~~~~~~~~~~~QPALlylvP~~l~~~~~~a~ 499 (525)
.+|+.+=... .+++++||.|=||--..++..++-+.
T Consensus 244 l~gl~vL~~~--v~kgrp~aGLP~LN~GaI~Gflig~l 279 (283)
T PF06550_consen 244 LAGLAVLLRF--VMKGRPQAGLPFLNGGAIAGFLIGAL 279 (283)
T ss_pred HHHHHHHHHH--HHcCCCCCCCCccchhHHHHHHHHHH
Confidence 5555544322 24589999998888777666555443
No 28
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.32 E-value=4.1e-06 Score=78.34 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=63.6
Q ss_pred ceeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCC------------------CCHHHHHHHHHHcCCcEEEEEeC
Q 009810 78 ASQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGG------------------CSFTAKANFAEEANASAILIINN 133 (525)
Q Consensus 78 ~~~~~Lv~~~---p~daC~~~~---~~l~g~IaLV~RG~------------------CsF~~Ka~nAq~aGA~avIV~N~ 133 (525)
..++++|.+. ..+.|...+ .+++||||||.||+ |++..|+++|+++||+|||+||+
T Consensus 19 ~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 19 AVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred CceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 4678899875 356786554 48999999999985 99999999999999999999998
Q ss_pred CCcccccccCCCCCCCcccceEEEechhhhHhHHHHh
Q 009810 134 KTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLI 170 (525)
Q Consensus 134 ~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L 170 (525)
.++... ..+.....+.. .++.++.+..+.+..++
T Consensus 99 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (151)
T cd04822 99 PNSHSG--DADRLPRFGGT-APQRVDIAAADPWFTAA 132 (151)
T ss_pred CcccCc--ccccccccCcc-ceEEechHHHHHHhhhh
Confidence 654211 00000000111 27888888887777653
No 29
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.32 E-value=1.9e-06 Score=85.27 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=67.4
Q ss_pred ceeEEEEecCCCCCCCCC--------CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc----------c-
Q 009810 78 ASQNRLVLADPPDCCSKP--------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL----------F- 138 (525)
Q Consensus 78 ~~~~~Lv~~~p~daC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l----------~- 138 (525)
..++++|.++ .|... ..+++|||+|+++|.|.+.+|+++||++||+|+|+|++..+. +
T Consensus 44 ~v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP 120 (220)
T cd02121 44 NVTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYP 120 (220)
T ss_pred CceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCC
Confidence 3678888876 34332 247999999999999999999999999999999999974221 0
Q ss_pred ----------cc-------ccCCC------------------CCCCcccceEEEechhhhHhHHHHhhc
Q 009810 139 ----------KM-------VCESN------------------ETDVDIRIPAIMLPQDAGANLEKLIKN 172 (525)
Q Consensus 139 ----------~M-------~~~~~------------------~~~~~i~IPvv~Is~~~G~~L~~~L~~ 172 (525)
+. .+.++ +...-.+||+.=|+..+++.|++.|..
T Consensus 121 ~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g 189 (220)
T cd02121 121 DGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGG 189 (220)
T ss_pred CCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCC
Confidence 00 00000 001224799999999999999999973
No 30
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.23 E-value=3.5e-06 Score=78.01 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=60.0
Q ss_pred eeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCCC------------------CHHHHHHHHHHcCCcEEEEEeCC
Q 009810 79 SQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGGC------------------SFTAKANFAEEANASAILIINNK 134 (525)
Q Consensus 79 ~~~~Lv~~~---p~daC~~~~---~~l~g~IaLV~RG~C------------------sF~~Ka~nAq~aGA~avIV~N~~ 134 (525)
..+++|.+. ...+|...+ .+++||||||.||+| ++..|+++|+++||+|+|++|+.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 567888774 345676544 489999999999999 69999999999999999999986
Q ss_pred Cc-ccccccCCCCCCCcccce-EEEechhhhHhHHH
Q 009810 135 TE-LFKMVCESNETDVDIRIP-AIMLPQDAGANLEK 168 (525)
Q Consensus 135 ~~-l~~M~~~~~~~~~~i~IP-vv~Is~~~G~~L~~ 168 (525)
+. ..+...-.+. ....++ ...|++..+.+|.+
T Consensus 100 ~~~~~p~~~~~~~--~~~~~~~~~~i~~~~a~~l~~ 133 (142)
T cd04814 100 APASYGWATWKNP--AKVHPNLEAAIQRAVAVDLFE 133 (142)
T ss_pred CcccCChhhhhcc--cccCCceeeEecHHHHHHHHh
Confidence 42 1110000011 112223 45577777777655
No 31
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.18 E-value=4.7e-06 Score=76.74 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=48.8
Q ss_pred ceeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCCCC------------HHHHHHHHHHcCCcEEEEEeCCC
Q 009810 78 ASQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGGCS------------FTAKANFAEEANASAILIINNKT 135 (525)
Q Consensus 78 ~~~~~Lv~~~---p~daC~~~~---~~l~g~IaLV~RG~Cs------------F~~Ka~nAq~aGA~avIV~N~~~ 135 (525)
..++++|.+. ..++|...+ .+++|||||++||+|. +.+|.++|+++||+|+|+||+.+
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 4678888875 356776544 5899999999999995 88999999999999999999864
No 32
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.86 E-value=2.8e-05 Score=72.41 Aligned_cols=94 Identities=14% Similarity=0.059 Sum_probs=64.1
Q ss_pred CceeEEEEecCCC---C--CCCCCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCccc---------c--c
Q 009810 77 DASQNRLVLADPP---D--CCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELF---------K--M 140 (525)
Q Consensus 77 ~~~~~~Lv~~~p~---d--aC~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~---------~--M 140 (525)
+..++++|.++-. | -=.. .-+++|||+|++.|......|++|||++||.|+|||.|..+.- . +
T Consensus 13 G~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~ 91 (153)
T cd02131 13 GTLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVS 91 (153)
T ss_pred CceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEe
Confidence 3457777776521 0 0001 1479999999999999999999999999999999999853210 0 0
Q ss_pred cc--CC--------------CCCCCcccceEEEechhhhHhHHHHhh
Q 009810 141 VC--ES--------------NETDVDIRIPAIMLPQDAGANLEKLIK 171 (525)
Q Consensus 141 ~~--~~--------------~~~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (525)
.+ ++ .+...-.+||+.=|+..+++.|+++-.
T Consensus 92 ~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 92 LNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred cCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 00 10 001123579999999999999887643
No 33
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.59 E-value=7.9e-05 Score=73.20 Aligned_cols=118 Identities=27% Similarity=0.400 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHhhhheeecccccccceEEEeeccCCCCCCCCCEEEEeccccC-----------CCCCcccccccccch
Q 009810 362 VGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFD-----------PWGGYSVIGFGDIIL 430 (525)
Q Consensus 362 ~~~ilL~~lf~YDifwVF~sp~~f~~sVMv~VA~~~~~~~~~~P~~l~~P~~~~-----------~~~~~s~LGlGDIvi 430 (525)
.+.+||..+=+||..=|+-| .=|++.|++-- ..++||++.+|...+ .+++-=|+|+||+++
T Consensus 138 pavvlL~~lavYDaIsVYkT------~HMIslA~~v~--d~~lPmlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavm 209 (277)
T COG3389 138 PAVVLLIALAVYDAISVYKT------RHMISLAEGVM--DLDLPMLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVM 209 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHH--hcCCceEEEeecccccceeehhhhcCCCCceEEEeechhhc
Confidence 46778999999999999955 46999998842 257999999996421 124445899999999
Q ss_pred hhHHHHHHHHHhhhccccCCcchhH--HHHHHHHHHHHHHHHHHHhhccCCcceeeehhhhhhhHHH
Q 009810 431 PGLIVAFSLRYDWLMKKNFRSGYFV--WAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFL 495 (525)
Q Consensus 431 PGl~ia~~~rfD~~~~~~~~~~YF~--~~~~~Y~~GL~~t~~~~~~~~~~~QPALlylvP~~l~~~~ 495 (525)
|-+++.=+.-|-.+.. -+|. .++.|=.+|+++-+.. +.+++||-|=|+---++...+
T Consensus 210 PsIlVvSaa~f~~s~~-----l~f~~Lpal~GglvGl~vL~~v---~r~Rp~pGLP~lN~GaIaGfl 268 (277)
T COG3389 210 PSILVVSAAFFLISPI-----LAFIVLPALAGGLVGLAVLYFV---NRGRPHPGLPFLNTGAIAGFL 268 (277)
T ss_pred ccceeeehHHhccCCc-----hhhhhHHHHhccHHHHHHHHHH---hcCCCCCCCceeccchHHHHH
Confidence 9999987777755442 2232 2577777887766433 447899999888765554433
No 34
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.98 E-value=0.046 Score=51.68 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=40.2
Q ss_pred eeEEEEecC-----CCCCCCCCC-CCCCCcEEEEecCCCCH-------------------HHHHHHHHHcCCcEEEEEeC
Q 009810 79 SQNRLVLAD-----PPDCCSKPK-NKLTGEAILVHRGGCSF-------------------TAKANFAEEANASAILIINN 133 (525)
Q Consensus 79 ~~~~Lv~~~-----p~daC~~~~-~~l~g~IaLV~RG~CsF-------------------~~Ka~nAq~aGA~avIV~N~ 133 (525)
..++||.+. |..+=++.. .+++||||++.+|+=.| ..|.+.|+++||+|+|++++
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 345677653 222222332 58999999999886543 34999999999999999976
Q ss_pred C
Q 009810 134 K 134 (525)
Q Consensus 134 ~ 134 (525)
.
T Consensus 102 ~ 102 (157)
T cd04821 102 T 102 (157)
T ss_pred C
Confidence 4
No 35
>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.
Probab=92.58 E-value=0.18 Score=54.30 Aligned_cols=64 Identities=30% Similarity=0.530 Sum_probs=45.6
Q ss_pred ccccccccchhhHHHHHHHHH-hhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhccCCcceeeehhhhhhhHHH
Q 009810 421 SVIGFGDIILPGLIVAFSLRY-DWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFL 495 (525)
Q Consensus 421 s~LGlGDIviPGl~ia~~~rf-D~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALlylvP~~l~~~~ 495 (525)
--|||||.|+=+++++-+.++ |.. -...|++|-.+||++|.+.+..+ +++-|||= ++.++|.+.
T Consensus 326 ~klGlGDFiFYs~Lvg~aa~~~~~~--------~~~~~~~ail~Gl~~Tl~~l~~~-~~alPALP--isi~~g~~~ 390 (403)
T PF01080_consen 326 IKLGLGDFIFYSVLVGRAAMYGDWN--------TVVACFVAILIGLCLTLLLLAIF-RKALPALP--ISIALGLIF 390 (403)
T ss_dssp -SS-TTTHHHHHHHHHHHHHH-TTT--------THHHHHHHHHHHHHHHHHHHHHH-T-S-SSSS--S----HHHH
T ss_pred eeecchhHHHHHHHHhHHHhcCCHH--------HHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCc--HHHHHHHHH
Confidence 359999999999999988876 432 24578999999999999999998 89999982 334444443
No 36
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=90.05 E-value=0.23 Score=52.58 Aligned_cols=68 Identities=25% Similarity=0.421 Sum_probs=53.2
Q ss_pred ccccccccchhhHHHHHHHHHhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhccCCcceeeehhhhhhhHHHHHH
Q 009810 421 SVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLG 498 (525)
Q Consensus 421 s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALlylvP~~l~~~~~~a 498 (525)
--|||||.|+=-+++.-+.-||..+. -++|++|-.+||.+|...+.++ |++-|||= .|.++|.+.-.+
T Consensus 320 ikLGlGDFIFYSvLvGkAa~~~d~~T-------viAC~vaIL~GL~~TL~llsv~-~kALPALP--isI~~G~iFYF~ 387 (406)
T KOG2736|consen 320 IKLGLGDFIFYSVLVGKAAAYGDLNT-------VIACFVAILIGLCLTLLLLSVF-KKALPALP--ISITFGLIFYFS 387 (406)
T ss_pred eeeccCceEEEEeeccchhhcCChHH-------HHHHHHHHHHHHHHHHHHHHHH-hhcCcCCc--hHHHHHHHHHHH
Confidence 35999999988888877777762221 2479999999999999999999 89999983 567777765554
No 37
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=78.16 E-value=3.4 Score=47.87 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=49.2
Q ss_pred EeeecCCCCccccccCCceeEEEEecCCCCCC-----CCCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 009810 61 VGVGARFGRTLEAKEKDASQNRLVLADPPDCC-----SKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK 134 (525)
Q Consensus 61 ~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC-----~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~ 134 (525)
.....+|+...|.. ..++.+|.++-...= ++..-+++|+|+|++-|.-.+.+|++||+++||.|+++|.+.
T Consensus 143 ~~~~~~~~~~s~~g---~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 143 PDIVEPFRAYSPSG---SVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred ccccCchhccCcCC---CccceEEEEecCchhhhhHhhcCcccccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 33444555443332 345667766422111 122246889999999999999999999999999999999874
No 38
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=49.02 E-value=92 Score=33.69 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=58.1
Q ss_pred CCCCcEEEEecCCCCHHHHHH--HHHHcCCcEEEEEeCCCcccccc-cCCCC---CCCcccceEEEechhhhHhHHHHhh
Q 009810 98 KLTGEAILVHRGGCSFTAKAN--FAEEANASAILIINNKTELFKMV-CESNE---TDVDIRIPAIMLPQDAGANLEKLIK 171 (525)
Q Consensus 98 ~l~g~IaLV~RG~CsF~~Ka~--nAq~aGA~avIV~N~~~~l~~M~-~~~~~---~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (525)
+..|++++-+|-+--...|.. .|.++||.|+|+-.+++.- |. +++-. ......||+..++..++...+.
T Consensus 87 D~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rr--iV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~~--- 161 (486)
T COG4882 87 DAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRR--IVTGGDWGYSVSSSPTPIPVAVVPENYSRYAEE--- 161 (486)
T ss_pred CCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCcee--EEecccccccCCCCCCCcceEEeccCcchhhcc---
Confidence 678899888887666666654 5778999999998765432 21 11111 1234589999999999887754
Q ss_pred cCcEEEEEEecCCCcccchh
Q 009810 172 NNSVVSVQLYSPRRPVVDVA 191 (525)
Q Consensus 172 ~g~~V~V~l~~p~~p~vD~s 191 (525)
..++++..+.-.+...|++
T Consensus 162 -~~rvrl~vD~~~~~ty~y~ 180 (486)
T COG4882 162 -AGRVRLWVDACVERTYDYN 180 (486)
T ss_pred -ceeEEEEEecccceeEEEE
Confidence 3467776665555445543
No 39
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.54 E-value=8 Score=41.03 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=16.7
Q ss_pred hhhhheeeeeeecccchhhhccee
Q 009810 330 CIAFSVVWAVYRRISFAWIGQDIL 353 (525)
Q Consensus 330 ~~~~~~~w~~~~~~~~~Wi~~nil 353 (525)
+++|++.|++++--+--|++=|++
T Consensus 240 lILF~I~~il~~g~~g~W~FPNL~ 263 (372)
T KOG2927|consen 240 LILFGITWILTGGKHGFWLFPNLT 263 (372)
T ss_pred HHHHHHHHHHhCCCCceEeccchh
Confidence 566778899988333368877765
No 40
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=41.26 E-value=81 Score=29.04 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCCCcEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHhhcC
Q 009810 97 NKLTGEAILVH--RGGCSFTAKANFAEEAN-ASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNN 173 (525)
Q Consensus 97 ~~l~g~IaLV~--RG~CsF~~Ka~nAq~aG-A~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g 173 (525)
.+++|+|.+.. ||.|.=.-=...+.+.| |-+.||.-+.+......+ ---.||.+-... ++.+.++.|
T Consensus 47 ~~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~~e~EpIla~Ga------i~a~iPlv~~~~----e~~~~l~~g 116 (131)
T COG1786 47 ESLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVNEEAEPILAVGA------ILAGIPLVDGVD----EFFEELKTG 116 (131)
T ss_pred ccccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhhcCCcceeeehh------hhcCCceEeccH----HHHHHhccC
Confidence 47999999987 78898888888888888 555565544444333222 112678766554 466677888
Q ss_pred cEEEEE
Q 009810 174 SVVSVQ 179 (525)
Q Consensus 174 ~~V~V~ 179 (525)
.+|++.
T Consensus 117 ~~v~v~ 122 (131)
T COG1786 117 DRVRVN 122 (131)
T ss_pred CEEEEc
Confidence 877764
No 41
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.26 E-value=1.6e+02 Score=23.09 Aligned_cols=55 Identities=24% Similarity=0.193 Sum_probs=25.6
Q ss_pred hcCcEEEEEEecCCCcccchhHHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHhhhhc
Q 009810 171 KNNSVVSVQLYSPRRPVVDVAEVFL--WLMAVGTILCASYWSAWTARETAIELDKLLK 226 (525)
Q Consensus 171 ~~g~~V~V~l~~p~~p~vD~s~~~L--~lmAv~tI~~gs~ws~~~~~~~~~~~~~~~~ 226 (525)
++...|++.+..-..+ .-.+...+ ++++++..++.+++..++.+.+.++..|+++
T Consensus 2 qN~~~V~v~~~~~~~~-~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~ 58 (68)
T PF06305_consen 2 QNTQPVTVNFLFGQFP-LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELK 58 (68)
T ss_pred CCCceEEEEEEeeecc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788887544333 32333333 3344444444444444544444433333333
No 42
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.38 E-value=19 Score=37.60 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=29.0
Q ss_pred EEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc
Q 009810 104 ILVHRGGCSFTAKANFAEEANASAILIINNKTE 136 (525)
Q Consensus 104 aLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~ 136 (525)
.+++||+|+..+|.+-+|+.|-+|+|.-++...
T Consensus 150 ~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~ 182 (374)
T COG5540 150 RCNRRGNETEEDPTRERRRTRFKGVIRGSERNG 182 (374)
T ss_pred HHHHccCccccCccccchhccccceeeccccCC
Confidence 356799999999999999999999999887653
No 43
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=27.47 E-value=1.7e+02 Score=32.42 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=21.8
Q ss_pred ccccccchhh--HHHHHHHHHhhhccccCCcchhHHHHHHHHHHHHHHHHH
Q 009810 423 IGFGDIILPG--LIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVA 471 (525)
Q Consensus 423 LGlGDIviPG--l~ia~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~ 471 (525)
=|+|+.+-|- .+++.+-==+....+ +-|.-.....+.+.++.+..+++
T Consensus 414 ~gl~n~isPtsg~~m~~l~ia~V~~~~-w~K~~~~~~~~~~v~~~v~l~ia 463 (465)
T PF03606_consen 414 DGLGNSISPTSGVLMAVLGIAKVSYGK-WVKRTWPPMLIWFVLSIVFLIIA 463 (465)
T ss_pred HHHHhhccchHHHHHHHhhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888884 444433211111111 11122334455555555555444
No 44
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=22.50 E-value=1.8e+02 Score=24.26 Aligned_cols=69 Identities=9% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCcEEEEecC-----CCCHHHHHHHHH-HcCCcEEEEEeCCCc--cc-ccccCCCCCCCcccceEEEechh---hhHhHH
Q 009810 100 TGEAILVHRG-----GCSFTAKANFAE-EANASAILIINNKTE--LF-KMVCESNETDVDIRIPAIMLPQD---AGANLE 167 (525)
Q Consensus 100 ~g~IaLV~RG-----~CsF~~Ka~nAq-~aGA~avIV~N~~~~--l~-~M~~~~~~~~~~i~IPvv~Is~~---~G~~L~ 167 (525)
+++|++...| .|.|-.|++..- +.|.. .-.+|-.++ .. .+.. ....-++|.++|... ..+.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-y~~idv~~~~~~~~~l~~----~~g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD-FGTFDILEDEEVRQGLKE----YSNWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-eEEEEcCCCHHHHHHHHH----HhCCCCCCEEEECCEEEeCHHHHH
Confidence 3578888776 899999998766 45644 344443221 11 1110 012347899998765 345566
Q ss_pred HHhhcC
Q 009810 168 KLIKNN 173 (525)
Q Consensus 168 ~~L~~g 173 (525)
++.++|
T Consensus 82 ~l~~~g 87 (90)
T cd03028 82 EMHESG 87 (90)
T ss_pred HHHHcC
Confidence 655555
No 45
>PRK11588 hypothetical protein; Provisional
Probab=21.59 E-value=1.9e+02 Score=32.57 Aligned_cols=43 Identities=14% Similarity=0.406 Sum_probs=25.5
Q ss_pred eeecccceehhhhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhH
Q 009810 244 VDINMASAVSFVVIASCFLVMLYKLMS-FWFIEVLVVLFCIGGV 286 (525)
Q Consensus 244 ~~i~~~~a~~F~v~as~~Ll~ly~f~~-~~~~~~l~~~f~i~g~ 286 (525)
.++|.+|-+...++.-.+.++.|=..+ .|-..=+..+|.+.|+
T Consensus 280 ~~~t~r~klvL~~f~~~~~~~i~Gv~~~gW~~~Eia~~Fl~~gi 323 (506)
T PRK11588 280 RPFTFGDWLVLLVLTAVMVWVIWGVVVNAWFIPEIASQFFTMGL 323 (506)
T ss_pred cCcChhhHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 478999988777776666666674321 3322234555555443
Done!