Query 009810
Match_columns 525
No_of_seqs 358 out of 1524
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 2.4E-21 8.1E-26 185.5 15.5 131 50-188 40-193 (194)
2 4hyg_A Putative uncharacterize 99.8 6E-21 2E-25 189.4 1.7 162 328-505 109-297 (301)
3 3iib_A Peptidase M28; YP_92679 99.1 6.5E-10 2.2E-14 118.7 12.1 145 35-182 56-225 (444)
4 2ek8_A Aminopeptidase; metallo 98.9 6.3E-09 2.1E-13 110.0 14.4 90 77-170 91-181 (421)
5 3fed_A Glutamate carboxypeptid 98.6 9.1E-08 3.1E-12 107.6 10.2 96 75-172 123-268 (707)
6 3kas_A Transferrin receptor pr 98.5 1.8E-07 6.2E-12 104.1 8.4 93 77-171 106-230 (640)
7 3i6s_A Subtilisin-like proteas 98.3 1.1E-06 3.7E-11 98.1 8.4 93 79-180 257-354 (649)
8 1xf1_A C5A peptidase, SCP; hyd 98.0 1.8E-05 6.1E-10 91.7 11.9 92 79-181 260-352 (926)
9 1y9z_A Alkaline serine proteas 97.9 5.3E-05 1.8E-09 80.4 10.9 86 90-180 258-356 (441)
10 2kr6_A Presenilin-1; protease, 96.2 0.0039 1.3E-07 57.8 4.8 65 421-496 88-155 (176)
11 3vta_A Cucumisin; subtilisin-l 91.1 0.27 9.2E-06 54.3 6.6 72 90-174 268-342 (621)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=185.55 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=105.2
Q ss_pred eeec--C--CCceeEEeeecCCCCccccccCCceeEEEEecC---CCCCCCCCCC---C-------CCCcEEEEecCC-C
Q 009810 50 TWVD--G--GEDTEYVGVGARFGRTLEAKEKDASQNRLVLAD---PPDCCSKPKN---K-------LTGEAILVHRGG-C 111 (525)
Q Consensus 50 ~wv~--g--~~~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~daC~~~~~---~-------l~g~IaLV~RG~-C 111 (525)
+|.| + +...++.+.+|+||..+|.+ +.++.++.+. +.+||++.+. . .+||||||+||+ |
T Consensus 40 sy~d~~~~~n~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~C 116 (194)
T 3icu_A 40 SWRVPHTGVNRTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGC 116 (194)
T ss_dssp EEECCSSCTTCEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTC
T ss_pred EEECCCCCccceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCc
Confidence 5554 3 44556889999999998875 5788888764 7899998762 1 468999999999 9
Q ss_pred CHHHHHHHHHHcCCcEEEEEeCCC---cccccccCCCCCCCcccceEEEechhhhHhHHHHhhcCcEEEEEEecC--CCc
Q 009810 112 SFTAKANFAEEANASAILIINNKT---ELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSP--RRP 186 (525)
Q Consensus 112 sF~~Ka~nAq~aGA~avIV~N~~~---~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l~~p--~~p 186 (525)
+|.+|++|||++||+|+||||+.+ ....|... ...+||++||++++|+.|+++|++|.+|++++... ..|
T Consensus 117 sF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~p 191 (194)
T 3icu_A 117 TFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGP 191 (194)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCC
Confidence 999999999999999999999852 35677642 13579999999999999999999999998887543 335
Q ss_pred cc
Q 009810 187 VV 188 (525)
Q Consensus 187 ~v 188 (525)
|+
T Consensus 192 w~ 193 (194)
T 3icu_A 192 WV 193 (194)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.80 E-value=6e-21 Score=189.43 Aligned_cols=162 Identities=25% Similarity=0.301 Sum_probs=111.3
Q ss_pred chhhhhheeeeeeecccchhhhccee------------eEeccchhhHHHHHHHHHHHhhhheeecccccccceEEEeec
Q 009810 328 PFCIAFSVVWAVYRRISFAWIGQDIL------------IVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVAR 395 (525)
Q Consensus 328 ~~~~~~~~~w~~~~~~~~~Wi~~nil------------~~~l~s~k~~~ilL~~lf~YDifwVF~sp~~f~~sVMv~VA~ 395 (525)
..++++++..+.+. +|+..|+. -+.+..+ .+.+||+++.+||++|||.|+ .|+++|+
T Consensus 109 ~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLAe 177 (301)
T 4hyg_A 109 IGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLAE 177 (301)
T ss_dssp HHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHTT
T ss_pred HHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHHH
Confidence 34555555555555 49999998 3566777 999999999999999999665 8999999
Q ss_pred cCCCCCCCCCEEEEeccccC-------------CCCCcccccccccchhhHHHHHHHHHhhhcccc--CCcchhHHHHHH
Q 009810 396 GDRSGEDGIPMLLKIPRLFD-------------PWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKN--FRSGYFVWAMTA 460 (525)
Q Consensus 396 ~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~--~~~~YF~~~~~~ 460 (525)
|-- ..++|+++++|+-.+ ..++..++|+||+++|+++++-+.+||...... ..-+ ++.+++|
T Consensus 178 gvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~G 254 (301)
T 4hyg_A 178 GVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVG 254 (301)
T ss_dssp TC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHH
T ss_pred hhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHH
Confidence 842 246999999998321 135678999999999999999999999754411 1123 7899999
Q ss_pred HHHHHHHHHHHHHhhccCCcceeeehhhhhhhHHHHHHhhhchHh
Q 009810 461 YGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELK 505 (525)
Q Consensus 461 Y~~GL~~t~~~~~~~~~~~QPALlylvP~~l~~~~~~a~~rgel~ 505 (525)
|.+||.++... .+.+++||.|-||.+.+++..++-+..+||+.
T Consensus 255 t~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 255 SLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 99999999653 23489999999999999999999999999987
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.05 E-value=6.5e-10 Score=118.66 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=97.1
Q ss_pred CCCCCC-CCeEEEEeeeeecCCCce--------eEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC-CCCCCcEE
Q 009810 35 KRPGCD-NNFVLVKVPTWVDGGEDT--------EYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK-NKLTGEAI 104 (525)
Q Consensus 35 ~~p~c~-n~f~lvkv~~wv~g~~~~--------~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~-~~l~g~Ia 104 (525)
+..|.+ ...+-+.+..|..|.+.. .+......+++.. ..++++++|+.++..++|+... .+++||||
T Consensus 56 ~~~G~~~v~~q~f~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s~~t---p~~~vta~lV~v~~~~~~~~~~~~dvkGKIV 132 (444)
T 3iib_A 56 QSLGFDRVYKEPVTVPVWRRGIAKASILSPFPQPLVVTALGGSIAT---PAQGLSATIVRFDTLQDLQNAEAGSLNDKIA 132 (444)
T ss_dssp HHTTCSEEEEEEEEEEEEEEEEEEEEEEESSCEEECEEECBTCCCC---CTTCEEEEEEEESSHHHHHTSCTTTTTTCEE
T ss_pred HHcCCCceEeeeEEeccEEecceEEEEeCCCCceEEEEeccCCCCC---CCCCeEEEEEecCCHHHHhhccccccCccEE
Confidence 344553 233445566787554322 2333333344332 3457899999987666776553 58999999
Q ss_pred EEecCCCC---------HHHH----HHHHHHcCCcEEEEEeCCCcccccccCC--CCCCCcccceEEEechhhhHhHHHH
Q 009810 105 LVHRGGCS---------FTAK----ANFAEEANASAILIINNKTELFKMVCES--NETDVDIRIPAIMLPQDAGANLEKL 169 (525)
Q Consensus 105 LV~RG~Cs---------F~~K----a~nAq~aGA~avIV~N~~~~l~~M~~~~--~~~~~~i~IPvv~Is~~~G~~L~~~ 169 (525)
||+||.|. |..| +.+|+++||+|+|++|+.+....+.+.+ ........||++.|++++|+.|++.
T Consensus 133 lv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~ 212 (444)
T 3iib_A 133 FIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAM 212 (444)
T ss_dssp EECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHH
T ss_pred EEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHH
Confidence 99999996 6777 4579999999999999754322221111 0112346899999999999999999
Q ss_pred hhcCcEEEEEEec
Q 009810 170 IKNNSVVSVQLYS 182 (525)
Q Consensus 170 L~~g~~V~V~l~~ 182 (525)
+++|+++++++..
T Consensus 213 l~~g~~~~v~l~~ 225 (444)
T 3iib_A 213 LKRDKEVVISLEL 225 (444)
T ss_dssp HTTTCCCEEEEEE
T ss_pred HhCCCCeEEEEEE
Confidence 9988766666543
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.94 E-value=6.3e-09 Score=110.03 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=69.3
Q ss_pred CceeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccceE
Q 009810 77 DASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPA 155 (525)
Q Consensus 77 ~~~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPv 155 (525)
++.+++++.++.. ..+..+ .+++|||||++||+|+|.+|+++|+++||+|+||||+.+......- .......||+
T Consensus 91 g~v~a~lv~~~~G-~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~---~~~~~~~IP~ 166 (421)
T 2ek8_A 91 SDVTAELVYVGLG-TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTL---GGSDASFVAA 166 (421)
T ss_dssp EEEEEEEEECTTC-CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBC---SSCCTTCCEE
T ss_pred CCcceEEEECCCC-ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCccccccc---CCCCCCCccE
Confidence 3578888876533 223333 3899999999999999999999999999999999998643222111 1113568999
Q ss_pred EEechhhhHhHHHHh
Q 009810 156 IMLPQDAGANLEKLI 170 (525)
Q Consensus 156 v~Is~~~G~~L~~~L 170 (525)
+.|++++++.|++.+
T Consensus 167 ~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 167 VGITKQEGDALAANL 181 (421)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHh
Confidence 999999999999998
No 5
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.60 E-value=9.1e-08 Score=107.61 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=69.9
Q ss_pred cCCceeEEEEecCCCCCCCCC--------CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc-------c-
Q 009810 75 EKDASQNRLVLADPPDCCSKP--------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-------F- 138 (525)
Q Consensus 75 ~~~~~~~~Lv~~~p~daC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l-------~- 138 (525)
..+..++++|.++ .||... ..+++|||||++||+|+|.+|+++||++||+|+||||+..+. +
T Consensus 123 ~~G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP 200 (707)
T 3fed_A 123 AQGMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYP 200 (707)
T ss_dssp CCBCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTT
T ss_pred CCCceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCC
Confidence 3445788999985 455321 237999999999999999999999999999999999973210 0
Q ss_pred ----------c------cccCCC-CC-----------------CCcccceEEEechhhhHhHHHHhhc
Q 009810 139 ----------K------MVCESN-ET-----------------DVDIRIPAIMLPQDAGANLEKLIKN 172 (525)
Q Consensus 139 ----------~------M~~~~~-~~-----------------~~~i~IPvv~Is~~~G~~L~~~L~~ 172 (525)
. +.++++ .+ ....+||++-|++++|+.|++.++.
T Consensus 201 ~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 201 KGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0 000000 00 0136899999999999999998864
No 6
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.48 E-value=1.8e-07 Score=104.11 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=67.3
Q ss_pred CceeEEEEecCCCCCCCC-CC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc-c-----------cc
Q 009810 77 DASQNRLVLADPPDCCSK-PK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-F-----------KM 140 (525)
Q Consensus 77 ~~~~~~Lv~~~p~daC~~-~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l-~-----------~M 140 (525)
+..++++|.++ .||.. .+ .+++|||||++||+|+|.+|+++|+++||+|+||||+..+. . ..
T Consensus 106 g~v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~ 183 (640)
T 3kas_A 106 ATVTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHL 183 (640)
T ss_dssp EEEEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCS
T ss_pred CceEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEecccccccccccccccccccc
Confidence 34678898874 44422 11 37999999999999999999999999999999999975321 0 00
Q ss_pred ccCCCC----------------CCCcccceEEEechhhhHhHHHHhh
Q 009810 141 VCESNE----------------TDVDIRIPAIMLPQDAGANLEKLIK 171 (525)
Q Consensus 141 ~~~~~~----------------~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (525)
..++.. ......||++-|++++|+.|.+.+.
T Consensus 184 ~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 184 GTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000000 0113489999999999999998765
No 7
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.28 E-value=1.1e-06 Score=98.11 Aligned_cols=93 Identities=11% Similarity=0.190 Sum_probs=75.8
Q ss_pred eeEEEEecCCCCCCCCCC---CCC--CCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccc
Q 009810 79 SQNRLVLADPPDCCSKPK---NKL--TGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRI 153 (525)
Q Consensus 79 ~~~~Lv~~~p~daC~~~~---~~l--~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~I 153 (525)
...+++.....+.|.+.. ..+ +|||+|++||.|.+.+|..+++++||.++|++|+.++. . .....+
T Consensus 257 ~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~------~~~~~~ 327 (649)
T 3i6s_A 257 RDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVF---R------SATFPN 327 (649)
T ss_dssp EEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGGG---G------CCCCCS
T ss_pred cceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcccc---c------cccCcC
Confidence 467888887888998753 344 99999999999999999999999999999999987322 1 123478
Q ss_pred eEEEechhhhHhHHHHhhcCcEEEEEE
Q 009810 154 PAIMLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 154 Pvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
|+++|++++|++|++.+++++..++++
T Consensus 328 P~~~v~~~~g~~i~~yi~s~~~~~a~i 354 (649)
T 3i6s_A 328 PGVVVNKKEGKQVINYVKNSVTPTATI 354 (649)
T ss_dssp CEEEECHHHHHHHHHHHHTCSSCEEEE
T ss_pred CEEEEcHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999876444443
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.02 E-value=1.8e-05 Score=91.67 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=69.6
Q ss_pred eeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccceEEE
Q 009810 79 SQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIM 157 (525)
Q Consensus 79 ~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~ 157 (525)
...+++.+. ++|.+.. .+++|||+|++||.|+|.+|+.+|+++||.++|++|+......+.. .....+|+++
T Consensus 260 ~~~~lv~~~--~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~-----~~~~~iP~~~ 332 (926)
T 1xf1_A 260 KAYDYAYAN--RGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL-----PNVDQMPAAF 332 (926)
T ss_dssp CCEEEEECT--TSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC-----CCSTTCCEEE
T ss_pred ceEEEEECC--CCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc-----CccccccEEE
Confidence 346776653 5786543 6899999999999999999999999999999999998654222211 1235799999
Q ss_pred echhhhHhHHHHhhcCcEEEEEEe
Q 009810 158 LPQDAGANLEKLIKNNSVVSVQLY 181 (525)
Q Consensus 158 Is~~~G~~L~~~L~~g~~V~V~l~ 181 (525)
|++++|+.|+. +...++++.
T Consensus 333 i~~~~g~~l~~----~~~~ti~~~ 352 (926)
T 1xf1_A 333 ISRKDGLLLKD----NPQKTITFN 352 (926)
T ss_dssp ECHHHHHHHHH----CSSCEEEEC
T ss_pred EeHHHHHHHHh----CCceEEEec
Confidence 99999998874 445555553
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.85 E-value=5.3e-05 Score=80.40 Aligned_cols=86 Identities=17% Similarity=0.303 Sum_probs=64.9
Q ss_pred CCCCCCC-----CCCCCcEEEEecCCC-----CHHHHHHHHHHcCCcEEEEEeCCCcc--c-ccccCCCCCCCcccceEE
Q 009810 90 DCCSKPK-----NKLTGEAILVHRGGC-----SFTAKANFAEEANASAILIINNKTEL--F-KMVCESNETDVDIRIPAI 156 (525)
Q Consensus 90 daC~~~~-----~~l~g~IaLV~RG~C-----sF~~Ka~nAq~aGA~avIV~N~~~~l--~-~M~~~~~~~~~~i~IPvv 156 (525)
+.|.+.+ .+++|||+|++||+| .+.+|+++++++||+++|+||+.+.. . .... +......||++
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~---~~~~~~~~p~~ 334 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLV---DANSDITVPSV 334 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEE---CTTCCCCSCEE
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCcccccccccc---ccccCccccEE
Confidence 4587542 589999999999987 89999999999999999999986421 1 0000 11234589999
Q ss_pred EechhhhHhHHHHhhcCcEEEEEE
Q 009810 157 MLPQDAGANLEKLIKNNSVVSVQL 180 (525)
Q Consensus 157 ~Is~~~G~~L~~~L~~g~~V~V~l 180 (525)
+|++++|++|++.+ ++++++..
T Consensus 335 ~v~~~~g~~l~~~~--~~~~t~~~ 356 (441)
T 1y9z_A 335 SVDRATGLALKAKL--GQSTTVSN 356 (441)
T ss_dssp EECHHHHHHHHTTT--TSEEEEEE
T ss_pred EEeHHHHHHHHHHh--cCCccccc
Confidence 99999999999887 44555543
No 10
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=96.23 E-value=0.0039 Score=57.81 Aligned_cols=65 Identities=26% Similarity=0.437 Sum_probs=51.6
Q ss_pred ccccccccchhhHHHHHHH--H-HhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhccCCcceeeehhhhhhhHHHH
Q 009810 421 SVIGFGDIILPGLIVAFSL--R-YDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLT 496 (525)
Q Consensus 421 s~LGlGDIviPGl~ia~~~--r-fD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALlylvP~~l~~~~~ 496 (525)
--|||||.|+=+++++-+. + +|+. =...|++|..+||++|.+.+.++ +++-|||= +|..++.+.-
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~~--------t~~ac~vaIL~GL~~TL~lLa~~-~~aLPALP--iSI~lG~~fy 155 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDWN--------TTIACFVAILIGLCLTLLLLAIF-KKALPALP--ISITFGLVFY 155 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTTT--------THHHHHHHHHHHHHHHHHHHHHH-TCSCSSSS--SCCCCHHHHH
T ss_pred ccccccCeeehHHHHHHHHHhhccCHH--------HHHHHHHHHHHHHHHHHHHHhhh-cccCCCCc--HHHHHHHHHH
Confidence 4599999999999999887 5 3653 25689999999999999999998 89999983 3445554433
No 11
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=91.07 E-value=0.27 Score=54.29 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=56.4
Q ss_pred CCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhH
Q 009810 90 DCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANL 166 (525)
Q Consensus 90 daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L 166 (525)
..|.+.. ..++|||++++| .+..|..+++.+||.++|++|+..+. .....+|.+.++.++|..+
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~----------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY----------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS----------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccccccccccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc----------ccccccceEEECHHHHHHH
Confidence 4566544 478999999875 46689999999999999999986432 1235689999999999999
Q ss_pred HHHhhcCc
Q 009810 167 EKLIKNNS 174 (525)
Q Consensus 167 ~~~L~~g~ 174 (525)
++.+....
T Consensus 335 ~~~~~~~~ 342 (621)
T 3vta_A 335 LRYIYSIR 342 (621)
T ss_dssp HHHHHHHS
T ss_pred HHHHhccC
Confidence 99887644
Done!