Your job contains 1 sequence.
>009811
MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPL
LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS
RARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVL
CEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKL
KSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDEDYVSKPST
TATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVK
ASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQ
NQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYGYGSIPPMPAGPPPPHMVSPMVPLTQQQ
QLPLAQQPAPSNQQLTMLTQQPPGPPSFRPLQPPGMAFYGQPPHS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009811
(525 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184113 - symbol:AT5G10060 "AT5G10060" species... 1147 8.4e-121 2
TAIR|locus:2171795 - symbol:AT5G65180 "AT5G65180" species... 1103 4.2e-115 2
TAIR|locus:2091990 - symbol:AT3G26990 "AT3G26990" species... 605 7.8e-62 2
MGI|MGI:1917720 - symbol:Rprd1b "regulation of nuclear pr... 296 6.9e-26 1
UNIPROTKB|A6QLW3 - symbol:RPRD1B "RPRD1B protein" species... 293 1.5e-25 1
UNIPROTKB|E2RRZ8 - symbol:RPRD1B "Uncharacterized protein... 293 1.5e-25 1
UNIPROTKB|Q9NQG5 - symbol:RPRD1B "Regulation of nuclear p... 293 1.5e-25 1
UNIPROTKB|F2Z5H3 - symbol:RPRD1B "Uncharacterized protein... 293 1.5e-25 1
RGD|1304782 - symbol:Rprd1b "regulation of nuclear pre-mR... 284 1.6e-24 1
UNIPROTKB|Q5F4B4 - symbol:CREPT "Cell-cycle related and e... 281 3.5e-24 1
UNIPROTKB|Q0P5J9 - symbol:RPRD1A "Regulation of nuclear p... 280 4.5e-24 1
UNIPROTKB|Q96P16 - symbol:RPRD1A "Regulation of nuclear p... 280 4.5e-24 1
UNIPROTKB|Q5R8Y3 - symbol:RPRD1A "Regulation of nuclear p... 280 4.5e-24 1
MGI|MGI:2385066 - symbol:Rprd1a "regulation of nuclear pr... 278 7.5e-24 1
RGD|1307374 - symbol:Rprd1a "regulation of nuclear pre-mR... 278 7.5e-24 1
UNIPROTKB|I3LT67 - symbol:RPRD1A "Uncharacterized protein... 276 1.3e-23 1
UNIPROTKB|Q5ZM30 - symbol:RPRD1A "Regulation of nuclear p... 270 5.9e-23 1
UNIPROTKB|F1NQ92 - symbol:RPRD1A "Regulation of nuclear p... 262 4.5e-22 1
FB|FBgn0035318 - symbol:CG9018 species:7227 "Drosophila m... 225 3.8e-16 1
UNIPROTKB|H9L0N7 - symbol:RPRD2 "Uncharacterized protein"... 200 8.9e-14 3
UNIPROTKB|Q5VT52 - symbol:RPRD2 "Regulation of nuclear pr... 226 9.7e-14 3
CGD|CAL0000943 - symbol:orf19.7662 species:5476 "Candida ... 184 4.3e-13 2
WB|WBGene00015347 - symbol:cids-1 species:6239 "Caenorhab... 193 8.8e-13 1
UNIPROTKB|P34281 - symbol:cids-1 "CID domain-containing p... 193 8.8e-13 1
ZFIN|ZDB-GENE-030131-6641 - symbol:rprd2a "regulation of ... 198 4.0e-12 1
POMBASE|SPBC337.03 - symbol:rhn1 "RNA polymerase II trans... 183 2.8e-11 1
MGI|MGI:1922387 - symbol:Rprd2 "regulation of nuclear pre... 157 1.4e-10 4
UNIPROTKB|I3LG94 - symbol:RPRD2 "Uncharacterized protein"... 156 1.5e-10 4
UNIPROTKB|G3MX56 - symbol:RPRD2 "Uncharacterized protein"... 156 8.1e-10 3
ASPGD|ASPL0000042222 - symbol:AN2049 species:162425 "Emer... 170 9.6e-10 1
WB|WBGene00009451 - symbol:cids-2 species:6239 "Caenorhab... 135 1.5e-05 1
SGD|S000002697 - symbol:RTT103 "Protein involved in trans... 130 2.6e-05 1
>TAIR|locus:2184113 [details] [associations]
symbol:AT5G10060 "AT5G10060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K15559 HOGENOM:HOG000029886 EMBL:BT002418 EMBL:BT020375
IPI:IPI00535494 RefSeq:NP_196568.2 UniGene:At.28106
ProteinModelPortal:Q8GUK8 SMR:Q8GUK8 IntAct:Q8GUK8 PRIDE:Q8GUK8
EnsemblPlants:AT5G10060.1 GeneID:830870 KEGG:ath:AT5G10060
TAIR:At5g10060 InParanoid:Q8GUK8 OMA:TITETND PhylomeDB:Q8GUK8
ProtClustDB:CLSN2690086 Genevestigator:Q8GUK8 Uniprot:Q8GUK8
Length = 469
Score = 1147 (408.8 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 262/476 (55%), Positives = 326/476 (68%)
Query: 1 MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPL 60
M+SVFS+QIL +KL+KLN +QQ IETLSHWCIF+RSKAEL+V TW+KQFHS+++ QKVPL
Sbjct: 1 MSSVFSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPL 60
Query: 61 LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS 120
LYLANDILQNSKR+GNEFV EFW VLP ALKD+V GDD+GK+ V+R++ IW+ERRVFGS
Sbjct: 61 LYLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKIWEERRVFGS 120
Query: 121 RARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKL-TVGGAAEKIVSAYHLV 179
R++ +KDVMLG +VP PL+ S KKR R K KR+S+S RTKL + GG AEKI SAYHLV
Sbjct: 121 RSKSLKDVMLGEDVPLPLDIS-KKRPRGSKSSKRESKSSRTKLASSGGVAEKIASAYHLV 179
Query: 180 LCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKD-PKRKTLSKELEEEENMLKQCIE 238
+ E +EE EM +CKS V R++KMEKDV+ AC+ AKD PKRK+L+KELEEEE +L+QCIE
Sbjct: 180 VAENSNEEAEMNKCKSAVKRIRKMEKDVEEACSTAKDNPKRKSLAKELEEEEYLLRQCIE 239
Query: 239 KLKSVEASRVALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLNDEDYVSKP 298
KLKSV+ SR +LV+QLK+AL EQESEL+N++ NM+KRLNDEDY SK
Sbjct: 240 KLKSVQGSRSSLVNQLKDALREQESELDNLKAQIQVAKEQTEEAQNMQKRLNDEDYTSKQ 299
Query: 299 STTATLSADMN--AKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNA 356
+T AT + N K Q K T A+IAA LTASTSS MIM SVLS+FAA+ K +
Sbjct: 300 TTAATTITETNDNTKSGQASKMTPASIAA----MLTASTSSHMIMQSVLSSFAAEATKTS 355
Query: 357 GLVKA-STA--SNSFPPIPA-NSVTESIPKPEKQTAVSDPNMFLPAQSLSTPP-NQSYQ- 410
GL K+ ST S++ P+ N+ P + Q V PN P Q L P N Y
Sbjct: 356 GLSKSESTVPVSDTNASFPSYNNSQNQTPTTQGQYHVI-PNP-PPPQFLKPPVMNNPYAF 413
Query: 411 -TV------LVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYG---YGS 456
+ L P P + + QPQ +P S+S Q Q G P G YG+
Sbjct: 414 GNIPLMPPGLPPPPPPPHLIGNQQPQ---IPQSNSAQQSQ-QGPTFQPPGIMYYGA 465
Score = 62 (26.9 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 500 QQPPGPPSFRPLQPPGMAFYGQPPHS 525
QQ P+F QPPG+ +YG P HS
Sbjct: 447 QQSQQGPTF---QPPGIMYYGAPHHS 469
>TAIR|locus:2171795 [details] [associations]
symbol:AT5G65180 "AT5G65180" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007059 "chromosome segregation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0032204 "regulation of telomere maintenance"
evidence=RCA] [GO:0032504 "multicellular organism reproduction"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
chromosome segregation" evidence=RCA] EMBL:CP002688 EMBL:AB013395
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 KO:K15559 UniGene:At.49809 HOGENOM:HOG000029886
ProtClustDB:CLSN2690086 EMBL:AY034943 EMBL:AY063122 IPI:IPI00544106
RefSeq:NP_569007.1 UniGene:At.9292 ProteinModelPortal:Q9FJP7
SMR:Q9FJP7 PRIDE:Q9FJP7 EnsemblPlants:AT5G65180.1 GeneID:836642
KEGG:ath:AT5G65180 TAIR:At5g65180 InParanoid:Q9FJP7 OMA:NEETEMN
PhylomeDB:Q9FJP7 ArrayExpress:Q9FJP7 Genevestigator:Q9FJP7
Uniprot:Q9FJP7
Length = 439
Score = 1103 (393.3 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 236/433 (54%), Positives = 305/433 (70%)
Query: 1 MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPL 60
M+S FSE+IL + L+KLN TQQ I+TLS WCI HRS+AELVV TW+KQFHS+Q+ QKVPL
Sbjct: 1 MSSPFSEEILIDNLAKLNSTQQSIQTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPL 60
Query: 61 LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS 120
LYLANDILQNSKR+GNEFV EFWKVLP ALKD+V GDD GK VVSRLVNIW+ERRVFGS
Sbjct: 61 LYLANDILQNSKRQGNEFVQEFWKVLPGALKDIVSLGDDYGKGVVSRLVNIWEERRVFGS 120
Query: 121 RARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVL 180
R++ +KDVML E PPPL+ S KKR R K KRDS+S +TKL+ GG +EKIVSA++LV
Sbjct: 121 RSKSLKDVMLSEEAPPPLDVS-KKRFRGSKSAKRDSKSTKTKLSSGGVSEKIVSAFNLVR 179
Query: 181 CEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKL 240
E +EE EM +CKS V R++KMEKDV+ AC+ AKDP++++L+KELEEEEN+L+Q +EKL
Sbjct: 180 AENSNEETEMNKCKSAVRRIRKMEKDVEDACSTAKDPRKESLAKELEEEENILRQSVEKL 239
Query: 241 KSVEASRVALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLNDEDYVSKPST 300
KSVE SR +LV+ L+EAL EQESELEN+++ NM+KRLN+E V+
Sbjct: 240 KSVEESRTSLVNHLREALREQESELENLQSQIQVAQEQTEEAQNMQKRLNNETPVN---- 295
Query: 301 TATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVK 360
+ N Q+ K T A+IAA +A+ LT+ST+S MIMHSVLS+FAA+ + +GL K
Sbjct: 296 ------NNNGTSGQSAKITPASIAA-MAEMLTSSTNSSMIMHSVLSSFAAEATQTSGLTK 348
Query: 361 ASTA-SNSF--PPIPANSVTESIPKPEKQTAVSDPNM-FLPAQSLSTPPNQSYQTVLVPQ 416
++T+ +N+F PP P P +Q N+ +P +L PP + ++
Sbjct: 349 SNTSDTNAFVVPPNPQQYHIIPNPAASQQFPYGFGNIPLMPPGALPPPPPGTLPPHMMNN 408
Query: 417 PTMQNQARSTQPQ 429
N A+ Q
Sbjct: 409 NNQPNAAQQQAQQ 421
Score = 52 (23.4 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 513 PPGMAFYGQPPHS 525
PPGM ++G P HS
Sbjct: 427 PPGMMYFGPPHHS 439
Score = 39 (18.8 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 502 PPGPPSFRPLQPPGMAFYGQPPH 524
P PP P PPG PPH
Sbjct: 386 PLMPPGALPPPPPGTL----PPH 404
>TAIR|locus:2091990 [details] [associations]
symbol:AT3G26990 "AT3G26990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 EMBL:BT015401
IPI:IPI00544659 RefSeq:NP_189335.2 UniGene:At.43702
ProteinModelPortal:Q66GK1 SMR:Q66GK1 IntAct:Q66GK1 PaxDb:Q66GK1
PRIDE:Q66GK1 EnsemblPlants:AT3G26990.1 GeneID:822316
KEGG:ath:AT3G26990 TAIR:At3g26990 HOGENOM:HOG000029886
InParanoid:Q66GK1 OMA:RDMIENG PhylomeDB:Q66GK1
ProtClustDB:CLSN2680177 Genevestigator:Q66GK1 Uniprot:Q66GK1
Length = 513
Score = 605 (218.0 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 166/474 (35%), Positives = 254/474 (53%)
Query: 1 MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPL 60
M S F+ QIL EKL+KLN +Q IETLSHWCIFH +KA+ VV TW +QFH + Q++
Sbjct: 1 MGSSFNAQILVEKLAKLNNSQASIETLSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAY 60
Query: 61 LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS 120
LYLANDILQNS+RKG+EFV EFWKVLP AL+D++ENGDD G+ RLVNIW+ER+VFGS
Sbjct: 61 LYLANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRKSARRLVNIWEERKVFGS 120
Query: 121 RARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVL 180
R + +K+ +LG + P + P+K+ S+ + G EK+VSA ++
Sbjct: 121 RGQILKEELLGRQ---PENGTRNGNLVPLKL------SVPQRQVNGSTLEKVVSAVEVLH 171
Query: 181 CEQLSEEEEMARCKSVVHRVKKMEKDV--DIACTNAKDPKRKTLSKELEEEENMLKQCIE 238
Q+ E+ + + + ++K ++V D++ +A P + KEL+ + +L+ CIE
Sbjct: 172 GVQIDEDALVGKSTNAAGYLEKATQEVERDLSSGHAPGP---AVVKELQGQHVILRDCIE 228
Query: 239 KLKSVEASRVALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLNDEDYVSKP 298
+L ++E SR +L+S L+EAL EQE +LE VR ++ ++L D S+P
Sbjct: 229 QLGAMETSRTSLISHLREALQEQELKLEQVRNHLQIARFQSDRTGDLCRQLLDHGGSSQP 288
Query: 299 STTATLSADMNAKGAQT---PKRTAAAIAAEVADKLTASTSSQMIMH-------SVLS-- 346
T + K + T P+ + + A + AS +Q + +V++
Sbjct: 289 PATEEEESKEVIKVSSTAAAPQSFTHSDVEQSAPVMFASNPTQSLEDPRKTAAAAVVAKL 348
Query: 347 TFAAQEAKNAGLVKASTAS-----NSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSL 401
T + A+ V +S AS N+ PP +++ PEK+ + + + QS
Sbjct: 349 TASTSSAEMLSYVLSSLASEGIIGNNNPPAVTETLSSVDFPPEKRPKLQNHD-----QSY 403
Query: 402 STPPNQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGIM-TPYGY 454
+P +Q+ T P Q P + + P Q LQP G + TP+ Y
Sbjct: 404 LSPHHQNTATTSSSTPP---QPLPPPPPFQLQPQFL--QPLQPPGPVNHTPFNY 452
Score = 45 (20.9 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 502 PPGP----PSF-RPLQPPG 515
PP P P F +PLQPPG
Sbjct: 425 PPPPFQLQPQFLQPLQPPG 443
>MGI|MGI:1917720 [details] [associations]
symbol:Rprd1b "regulation of nuclear pre-mRNA domain
containing 1B" species:10090 "Mus musculus" [GO:0000993 "RNA
polymerase II core binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=ISO] [GO:0010564 "regulation of cell
cycle process" evidence=ISO] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=ISO] MGI:MGI:1917720 GO:GO:0008284
GO:GO:0045944 GO:GO:0006351 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 GO:GO:0000993 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOVERGEN:HBG051177 CTD:58490
ChiTaRS:RPRD1B EMBL:DQ372939 EMBL:AK011979 EMBL:AK139995
EMBL:AK147718 EMBL:AK147930 EMBL:AK152125 EMBL:AK152220
EMBL:AL669824 EMBL:BC028819 EMBL:BC042447 EMBL:BC054350
IPI:IPI00338515 IPI:IPI00653738 IPI:IPI00752391 RefSeq:NP_081710.1
UniGene:Mm.290810 ProteinModelPortal:Q9CSU0 SMR:Q9CSU0
PhosphoSite:Q9CSU0 PaxDb:Q9CSU0 PRIDE:Q9CSU0
Ensembl:ENSMUST00000029180 Ensembl:ENSMUST00000103123
Ensembl:ENSMUST00000109518 Ensembl:ENSMUST00000152452 GeneID:70470
KEGG:mmu:70470 UCSC:uc008npl.1 UCSC:uc008npm.1 UCSC:uc008npn.1
InParanoid:Q9CSU0 NextBio:331695 Bgee:Q9CSU0 Genevestigator:Q9CSU0
GermOnline:ENSMUSG00000027651 Uniprot:Q9CSU0
Length = 326
Score = 296 (109.3 bits), Expect = 6.9e-26, P = 6.9e-26
Identities = 92/285 (32%), Positives = 142/285 (49%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR A +V+ W ++ ++ +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
LAND++QNSKRKG EF EF VL A V D+ K + RL+NIW ER V+G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121
Query: 122 ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLT---VGGAAEKIVSAYHL 178
+ +K M + PPP K + K +KR + I+ + G + + SA L
Sbjct: 122 IQQLKLSMEDSKSPPP------KAAEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPL 175
Query: 179 V---LCEQLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEE--- 228
+ L + L + E A + V ++ + ++V D++ K + LSK ++E
Sbjct: 176 LTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACL 235
Query: 229 ---EEN-MLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269
E N L +E + + V KE L E+E +LE +
Sbjct: 236 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKEVLSEKEKKLEEYK 280
>UNIPROTKB|A6QLW3 [details] [associations]
symbol:RPRD1B "RPRD1B protein" species:9913 "Bos taurus"
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0010564 "regulation of cell cycle process"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 GeneTree:ENSGT00400000022016
KO:K15559 OMA:KKKGPEY GO:GO:0010564 GO:GO:0070940
HOGENOM:HOG000007456 HOVERGEN:HBG051177 CTD:58490 OrthoDB:EOG4255TB
EMBL:DAAA02036557 EMBL:DAAA02036558 EMBL:BC148107 IPI:IPI00703778
RefSeq:NP_001094604.1 UniGene:Bt.29916 SMR:A6QLW3
Ensembl:ENSBTAT00000006703 GeneID:529700 KEGG:bta:529700
InParanoid:A6QLW3 NextBio:20875086 Uniprot:A6QLW3
Length = 326
Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 91/285 (31%), Positives = 142/285 (49%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR A +V+ W ++ ++ +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
LAND++QNSKRKG EF EF VL A V D+ K + RL+NIW ER V+G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121
Query: 122 ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLT---VGGAAEKIVSAYHL 178
+ +K M + PPP K + K +KR + I+ + G + + SA L
Sbjct: 122 IQQLKLSMEDSKSPPP------KATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPL 175
Query: 179 V---LCEQLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEE--- 228
+ L + L + E A + V ++ + ++V D++ K + LSK ++E
Sbjct: 176 LTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACL 235
Query: 229 ---EEN-MLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269
E N L +E + + V K+ L E+E +LE +
Sbjct: 236 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 280
>UNIPROTKB|E2RRZ8 [details] [associations]
symbol:RPRD1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070940 "dephosphorylation of RNA polymerase
II C-terminal domain" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA] [GO:0010564 "regulation of cell cycle
process" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 CTD:58490 EMBL:AAEX03013924
RefSeq:XP_542990.3 ProteinModelPortal:E2RRZ8 SMR:E2RRZ8
PRIDE:E2RRZ8 Ensembl:ENSCAFT00000014042 GeneID:485866
KEGG:cfa:485866 NextBio:20859769 Uniprot:E2RRZ8
Length = 326
Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 91/285 (31%), Positives = 142/285 (49%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR A +V+ W ++ ++ +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
LAND++QNSKRKG EF EF VL A V D+ K + RL+NIW ER V+G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121
Query: 122 ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLT---VGGAAEKIVSAYHL 178
+ +K M + PPP K + K +KR + I+ + G + + SA L
Sbjct: 122 IQQLKLSMEDSKSPPP------KATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPL 175
Query: 179 V---LCEQLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEE--- 228
+ L + L + E A + V ++ + ++V D++ K + LSK ++E
Sbjct: 176 LTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACL 235
Query: 229 ---EEN-MLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269
E N L +E + + V K+ L E+E +LE +
Sbjct: 236 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 280
>UNIPROTKB|Q9NQG5 [details] [associations]
symbol:RPRD1B "Regulation of nuclear pre-mRNA
domain-containing protein 1B" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0010564 "regulation of cell cycle
process" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000993 "RNA polymerase II core binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] EMBL:CH471077
GO:GO:0008284 GO:GO:0045944 GO:GO:0006351 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 GO:GO:0000993
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOGENOM:HOG000007456 HOVERGEN:HBG051177
EMBL:DQ372938 EMBL:AK312468 EMBL:AL109823 EMBL:BC001696
EMBL:BC033629 IPI:IPI00009659 RefSeq:NP_067038.1 UniGene:Hs.278839
PDB:4FLA PDB:4FU3 PDB:4HFG PDBsum:4FLA PDBsum:4FU3 PDBsum:4HFG
ProteinModelPortal:Q9NQG5 SMR:Q9NQG5 IntAct:Q9NQG5
MINT:MINT-1475221 STRING:Q9NQG5 PhosphoSite:Q9NQG5 DMDM:23813907
PaxDb:Q9NQG5 PeptideAtlas:Q9NQG5 PRIDE:Q9NQG5 DNASU:58490
Ensembl:ENST00000373433 GeneID:58490 KEGG:hsa:58490 UCSC:uc002xho.4
CTD:58490 GeneCards:GC20P036662 H-InvDB:HIX0015799 HGNC:HGNC:16209
MIM:614694 neXtProt:NX_Q9NQG5 PharmGKB:PA162402043
InParanoid:Q9NQG5 OrthoDB:EOG4255TB PhylomeDB:Q9NQG5 ChiTaRS:RPRD1B
GenomeRNAi:58490 NextBio:64964 ArrayExpress:Q9NQG5 Bgee:Q9NQG5
CleanEx:HS_RPRD1B Genevestigator:Q9NQG5 GermOnline:ENSG00000101413
Uniprot:Q9NQG5
Length = 326
Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 91/285 (31%), Positives = 142/285 (49%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR A +V+ W ++ ++ +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
LAND++QNSKRKG EF EF VL A V D+ K + RL+NIW ER V+G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121
Query: 122 ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLT---VGGAAEKIVSAYHL 178
+ +K M + PPP K + K +KR + I+ + G + + SA L
Sbjct: 122 IQQLKLSMEDSKSPPP------KATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPL 175
Query: 179 V---LCEQLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEE--- 228
+ L + L + E A + V ++ + ++V D++ K + LSK ++E
Sbjct: 176 LTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACL 235
Query: 229 ---EEN-MLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269
E N L +E + + V K+ L E+E +LE +
Sbjct: 236 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 280
>UNIPROTKB|F2Z5H3 [details] [associations]
symbol:RPRD1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0010564 "regulation of cell cycle process"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 CTD:58490 EMBL:CU467005
EMBL:AEMK01197352 RefSeq:XP_001925742.2 UniGene:Ssc.11514
ProteinModelPortal:F2Z5H3 SMR:F2Z5H3 PRIDE:F2Z5H3
Ensembl:ENSSSCT00000008034 GeneID:100157347 KEGG:ssc:100157347
Uniprot:F2Z5H3
Length = 326
Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 91/285 (31%), Positives = 142/285 (49%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR A +V+ W ++ ++ +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
LAND++QNSKRKG EF EF VL A V D+ K + RL+NIW ER V+G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121
Query: 122 ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLT---VGGAAEKIVSAYHL 178
+ +K M + PPP K + K +KR + I+ + G + + SA L
Sbjct: 122 IQQLKLSMEDSKSPPP------KATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPL 175
Query: 179 V---LCEQLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEE--- 228
+ L + L + E A + V ++ + ++V D++ K + LSK ++E
Sbjct: 176 LTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACL 235
Query: 229 ---EEN-MLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269
E N L +E + + V K+ L E+E +LE +
Sbjct: 236 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 280
>RGD|1304782 [details] [associations]
symbol:Rprd1b "regulation of nuclear pre-mRNA domain containing
1B" species:10116 "Rattus norvegicus" [GO:0000993 "RNA polymerase
II core binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO] [GO:0010564 "regulation of cell cycle process"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISO] RGD:1304782 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
IPI:IPI00777493 Ensembl:ENSRNOT00000055214 UCSC:RGD:1304782
ArrayExpress:D3ZA87 Uniprot:D3ZA87
Length = 224
Score = 284 (105.0 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 61/143 (42%), Positives = 84/143 (58%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR A +V+ W ++ ++ +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
LAND++QNSKRKG EF EF VL A V D+ K + RL+NIW ER V+G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121
Query: 122 ARGVKDVMLGGEVPPPLEFSGKK 144
+ +K M + PPP KK
Sbjct: 122 IQQLKLSMEDSKSPPPKAAEEKK 144
>UNIPROTKB|Q5F4B4 [details] [associations]
symbol:CREPT "Cell-cycle related and expression-elevated
protein in tumor" species:9031 "Gallus gallus" [GO:0000993 "RNA
polymerase II core binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0010564
"regulation of cell cycle process" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] GO:GO:0008284 GO:GO:0045944 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOGENOM:HOG000007456 HOVERGEN:HBG051177
CTD:58490 OrthoDB:EOG4255TB EMBL:AADN02019053 EMBL:DQ372940
EMBL:AJ851386 IPI:IPI00651204 RefSeq:NP_001026033.1
UniGene:Gga.16262 Ensembl:ENSGALT00000010979 GeneID:419295
KEGG:gga:419295 InParanoid:Q5F4B4 NextBio:20822377 Uniprot:Q5F4B4
Length = 325
Score = 281 (104.0 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 89/284 (31%), Positives = 143/284 (50%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR A +V+ W ++ ++ +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSSRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF EF VL A V D+ K + RL+NIW ER V+GS
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGSEF 121
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLT---VGGAAEKIVSAYHLV 179
++ + L E + +K+S +KR + I+ + G + + SA L+
Sbjct: 122 --IQQLKLSMEDSNSPQTKEEKKSS----LKRTFQQIQEEEDDDYPGSYSPQDPSAGPLL 175
Query: 180 ---LCEQLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENM 232
L + L + E A + V ++ + ++V D++ K + LSK ++E +
Sbjct: 176 TEDLIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLL 235
Query: 233 LKQCIEKLKSVEASRVALVSQL-------KEALHEQESELENVR 269
L + +L + R L L K+ L E+E +LE +
Sbjct: 236 LAEYNGRLAAELEDRRQLARMLIEYTQNQKDVLTEKEKKLEEYK 279
>UNIPROTKB|Q0P5J9 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9913 "Bos taurus" [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=ISS]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISS] Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 GO:GO:0070940 EMBL:BC119944
IPI:IPI00697180 IPI:IPI00876797 RefSeq:NP_001068624.1
UniGene:Bt.74401 ProteinModelPortal:Q0P5J9 SMR:Q0P5J9 PRIDE:Q0P5J9
Ensembl:ENSBTAT00000007226 Ensembl:ENSBTAT00000056481 GeneID:504355
KEGG:bta:504355 CTD:55197 HOGENOM:HOG000007456 HOVERGEN:HBG051177
InParanoid:Q0P5J9 OMA:SDFLRCQ OrthoDB:EOG4F4SBP NextBio:20866621
Uniprot:Q0P5J9
Length = 312
Score = 280 (103.6 bits), Expect = 4.5e-24, P = 4.5e-24
Identities = 88/278 (31%), Positives = 141/278 (50%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR + +V W+++ ++ +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF +F V+ A K V D+S K + R+++IW+ER V+ +
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYEN-- 119
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCE 182
DV+ ++ L K R R + +K D + L G +E + L L
Sbjct: 120 ----DVL--EQLKQALYGDKKPRKRTYEQIKVDENENCSSL--GSPSEPPQT---LDLVR 168
Query: 183 QLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCIE 238
L + E A + VH R+ + +V +++ + K + LSK +E+ +L
Sbjct: 169 ALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNG 228
Query: 239 KLKSVEASRVALVSQL-------KEALHEQESELENVR 269
+L + R L L KEAL E+E +LE +
Sbjct: 229 RLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYK 266
>UNIPROTKB|Q96P16 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9606 "Homo sapiens"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IMP] EMBL:CH471088 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GO:GO:0070940 CTD:55197 HOGENOM:HOG000007456
HOVERGEN:HBG051177 OMA:SDFLRCQ OrthoDB:EOG4F4SBP EMBL:AF419845
EMBL:AK001518 EMBL:AK292907 EMBL:AK314569 EMBL:BC000225
EMBL:BC010136 IPI:IPI00062336 IPI:IPI00102425 IPI:IPI00385260
RefSeq:NP_060640.2 UniGene:Hs.464912 ProteinModelPortal:Q96P16
SMR:Q96P16 IntAct:Q96P16 STRING:Q96P16 PhosphoSite:Q96P16
DMDM:74717048 PaxDb:Q96P16 PRIDE:Q96P16 DNASU:55197
Ensembl:ENST00000319040 Ensembl:ENST00000337059
Ensembl:ENST00000357384 Ensembl:ENST00000399022 GeneID:55197
KEGG:hsa:55197 UCSC:uc002kze.1 UCSC:uc002kzg.3 UCSC:uc010dmx.3
GeneCards:GC18M033569 H-InvDB:HIX0014404 HGNC:HGNC:25560
HPA:HPA040602 MIM:610347 neXtProt:NX_Q96P16 PharmGKB:PA162402042
InParanoid:Q96P16 PhylomeDB:Q96P16 ChiTaRS:RPRD1A GenomeRNAi:55197
NextBio:59071 Bgee:Q96P16 CleanEx:HS_RPRD1A Genevestigator:Q96P16
Uniprot:Q96P16
Length = 312
Score = 280 (103.6 bits), Expect = 4.5e-24, P = 4.5e-24
Identities = 88/278 (31%), Positives = 141/278 (50%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR + +V W+++ ++ +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF +F V+ A K V D+S K + R+++IW+ER V+ +
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYEN-- 119
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCE 182
DV+ ++ L K R R + +K D + L G +E + L L
Sbjct: 120 ----DVL--EQLKQALYGDKKPRKRTYEQIKVDENENCSSL--GSPSEPPQT---LDLVR 168
Query: 183 QLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCIE 238
L + E A + VH R+ + +V +++ + K + LSK +E+ +L
Sbjct: 169 ALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNG 228
Query: 239 KLKSVEASRVALVSQL-------KEALHEQESELENVR 269
+L + R L L KEAL E+E +LE +
Sbjct: 229 RLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYK 266
>UNIPROTKB|Q5R8Y3 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9601 "Pongo abelii"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=ISS] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=ISS] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 CTD:55197
HOVERGEN:HBG051177 OMA:SDFLRCQ EMBL:CR859614 RefSeq:NP_001126030.1
UniGene:Pab.876 ProteinModelPortal:Q5R8Y3 SMR:Q5R8Y3 PRIDE:Q5R8Y3
Ensembl:ENSPPYT00000010637 Ensembl:ENSPPYT00000033804
GeneID:100172978 KEGG:pon:100172978 InParanoid:Q5R8Y3
Uniprot:Q5R8Y3
Length = 312
Score = 280 (103.6 bits), Expect = 4.5e-24, P = 4.5e-24
Identities = 88/278 (31%), Positives = 141/278 (50%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR + +V W+++ ++ +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF +F V+ A K V D+S K + R+++IW+ER V+ +
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYEN-- 119
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCE 182
DV+ ++ L K R R + +K D + L G +E + L L
Sbjct: 120 ----DVL--EQLKQALYGDKKPRKRTYEQIKVDENENCSSL--GSPSEPPQT---LDLVR 168
Query: 183 QLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCIE 238
L + E A + VH R+ + +V +++ + K + LSK +E+ +L
Sbjct: 169 ALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNG 228
Query: 239 KLKSVEASRVALVSQL-------KEALHEQESELENVR 269
+L + R L L KEAL E+E +LE +
Sbjct: 229 RLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYK 266
>MGI|MGI:2385066 [details] [associations]
symbol:Rprd1a "regulation of nuclear pre-mRNA domain
containing 1A" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=ISO] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=ISO] MGI:MGI:2385066 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 GO:GO:0070940 CTD:55197
HOGENOM:HOG000007456 HOVERGEN:HBG051177 OMA:SDFLRCQ
OrthoDB:EOG4F4SBP EMBL:AK220475 EMBL:BC021395 EMBL:BC023084
IPI:IPI00123724 RefSeq:NP_659110.1 UniGene:Mm.28427
ProteinModelPortal:Q8VDS4 SMR:Q8VDS4 PhosphoSite:Q8VDS4
PaxDb:Q8VDS4 PRIDE:Q8VDS4 Ensembl:ENSMUST00000046206 GeneID:225283
KEGG:mmu:225283 UCSC:uc008egu.1 InParanoid:Q8VDS4 NextBio:377605
Bgee:Q8VDS4 Genevestigator:Q8VDS4 Uniprot:Q8VDS4
Length = 312
Score = 278 (102.9 bits), Expect = 7.5e-24, P = 7.5e-24
Identities = 88/278 (31%), Positives = 140/278 (50%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR + +V W+++ ++ +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF +F V+ A K V D+S K + R+++IW+ER V+ +
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYEN-- 119
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCE 182
DV+ ++ L K R R + +K D + L G +E + L L
Sbjct: 120 ----DVL--EQLKHALYGDKKARKRTYEQIKVDENENCSSL--GSPSEPPQT---LDLVR 168
Query: 183 QLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCIE 238
L + E A + VH R+ + +V +++ K + LSK +E+ +L
Sbjct: 169 ALQDLENAASGDAAVHQRIASLPVEVQEVSLLEKITDKESGERLSKMVEDACMLLADYNG 228
Query: 239 KLKSVEASRVALVSQL-------KEALHEQESELENVR 269
+L + R L L KEAL E+E +LE +
Sbjct: 229 RLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYK 266
>RGD|1307374 [details] [associations]
symbol:Rprd1a "regulation of nuclear pre-mRNA domain containing
1A" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA;ISO] [GO:0070940 "dephosphorylation of RNA polymerase
II C-terminal domain" evidence=IEA;ISO] RGD:1307374
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 GO:GO:0070940
CTD:55197 OMA:SDFLRCQ OrthoDB:EOG4F4SBP IPI:IPI00763121
RefSeq:XP_001056597.3 RefSeq:XP_214609.6 PRIDE:D4AAU4
Ensembl:ENSRNOT00000021624 GeneID:291736 KEGG:rno:291736
UCSC:RGD:1307374 Uniprot:D4AAU4
Length = 312
Score = 278 (102.9 bits), Expect = 7.5e-24, P = 7.5e-24
Identities = 88/278 (31%), Positives = 140/278 (50%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR + +V W+++ ++ +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF +F V+ A K V D+S K + R+++IW+ER V+ +
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYEN-- 119
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCE 182
DV+ ++ L K R R + +K D + L G +E + L L
Sbjct: 120 ----DVL--EQLKHALYGDKKTRKRTYEQIKVDENENCSSL--GSPSEPPQT---LDLVR 168
Query: 183 QLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCIE 238
L + E A + VH R+ + +V +++ K + LSK +E+ +L
Sbjct: 169 ALQDLENAASGDAAVHQRIASLPVEVQEVSLLEKITDKESGERLSKMVEDACMLLADYNG 228
Query: 239 KLKSVEASRVALVSQL-------KEALHEQESELENVR 269
+L + R L L KEAL E+E +LE +
Sbjct: 229 RLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYK 266
>UNIPROTKB|I3LT67 [details] [associations]
symbol:RPRD1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=IEA] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 OMA:SDFLRCQ
EMBL:FP325286 RefSeq:XP_003356459.1 Ensembl:ENSSSCT00000028030
GeneID:100621319 KEGG:ssc:100621319 Uniprot:I3LT67
Length = 312
Score = 276 (102.2 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 87/278 (31%), Positives = 141/278 (50%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L +KLS+L+ +QQ ++TLS W I HR + +V W+++ ++ +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF +F V+ A K V D+S K + R+++IW+ER V+ +
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYEN-- 119
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCE 182
DV+ ++ L K R R + ++ D + L G +E + L L
Sbjct: 120 ----DVL--EQLKQALYGDKKPRKRTYEQIQVDENENCSSL--GSPSEPPQT---LDLVR 168
Query: 183 QLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCIE 238
L + E A + VH R+ + +V +++ + K + LSK +E+ +L
Sbjct: 169 ALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNG 228
Query: 239 KLKSVEASRVALVSQL-------KEALHEQESELENVR 269
+L + R L L KEAL E+E +LE +
Sbjct: 229 RLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYK 266
>UNIPROTKB|Q5ZM30 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9031 "Gallus gallus"
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GO:GO:0070940 CTD:55197 HOGENOM:HOG000007456 HOVERGEN:HBG051177
EMBL:AJ719554 IPI:IPI00681392 RefSeq:NP_001026176.1
UniGene:Gga.12933 ProteinModelPortal:Q5ZM30 GeneID:420953
KEGG:gga:420953 NextBio:20823795 Uniprot:Q5ZM30
Length = 268
Score = 270 (100.1 bits), Expect = 5.9e-23, P = 5.9e-23
Identities = 85/275 (30%), Positives = 137/275 (49%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S FSE L KLS+L+ +QQ ++TLS W I HR + L+V+ W+++ ++ +K+ LY
Sbjct: 2 SAFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFLY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA 122
LAND++QNSKRKG EF +F V+ A K V D+S K R+++IW+ER V+ +
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSESDESCKKHPGRVLSIWEERSVYEN-- 119
Query: 123 RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCE 182
DV+ ++ L K R R + +K D + + + + + L
Sbjct: 120 ----DVL--EQLRQALYGDRKVRKRTYEQIKVDENNCSPRSSPTDPPQT------MDLIR 167
Query: 183 QLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCIE 238
L E E A + VH R+ + +V D++ + K + LSK +++ +L
Sbjct: 168 ALQELENAASGDAAVHQRIASLPIEVQDVSLLDRITDKESGEQLSKMVDDACMLLADYNG 227
Query: 239 KLKSVEASRVALVSQL-------KEALHEQESELE 266
+L + R L L KE L E+E +LE
Sbjct: 228 RLAAEIDDRKQLTRMLSDFLRCQKEFLAEKEHKLE 262
>UNIPROTKB|F1NQ92 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9031 "Gallus gallus"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 OMA:SDFLRCQ
EMBL:AADN02008126 IPI:IPI00579554 Ensembl:ENSGALT00000021433
ArrayExpress:F1NQ92 Uniprot:F1NQ92
Length = 321
Score = 262 (97.3 bits), Expect = 4.5e-22, P = 4.5e-22
Identities = 84/279 (30%), Positives = 139/279 (49%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHS-SQLVQKVPLL 61
S FSE L KLS+L+ +QQ ++TLS W I HR + L+V+ W+++ ++ +K+ L
Sbjct: 11 SAFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKVAKPNRKLTFL 70
Query: 62 YLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR 121
YLAND++QNSKRKG EF +F V+ A K V D+S K + R+++IW+ER V+ +
Sbjct: 71 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSESDESCKKHLGRVLSIWEERSVYEN- 129
Query: 122 ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLC 181
DV+ ++ L K + R + +K D + + + + + L
Sbjct: 130 -----DVL--EQLRQALYGDRKVKKRTYEQIKVDENNCSPRSSPTDPPQT------MDLI 176
Query: 182 EQLSEEEEMARCKSVVH-RVKKMEKDV-DIACTNAKDPKR--KTLSKELEEEENMLKQCI 237
L E E A + VH R+ + +V D++ + K + LSK +++ +L
Sbjct: 177 RALQELENAASGDAAVHQRIASLPIEVQDVSLLDRITDKESGEQLSKMVDDACMLLADYN 236
Query: 238 EKLKSVEASRVALVSQL-------KEALHEQESELENVR 269
+L + R L L KE L E+E +LE +
Sbjct: 237 GRLAAEIDDRKQLTRMLSDFLRCQKEFLAEKEHKLEEYK 275
>FB|FBgn0035318 [details] [associations]
symbol:CG9018 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:AE014296 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
KO:K15559 OMA:KKKGPEY UniGene:Dm.12912 GeneID:38283
KEGG:dme:Dmel_CG9018 FlyBase:FBgn0035318 GenomeRNAi:38283
NextBio:807847 RefSeq:NP_647701.1 ProteinModelPortal:Q9W039
SMR:Q9W039 PRIDE:Q9W039 EnsemblMetazoa:FBtr0072910 UCSC:CG9018-RA
InParanoid:Q9W039 PhylomeDB:Q9W039 ArrayExpress:Q9W039 Bgee:Q9W039
Uniprot:Q9W039
Length = 375
Score = 225 (84.3 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 80/274 (29%), Positives = 123/274 (44%)
Query: 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
S F++ L +KL++LN +QQ I+TLS W I HR + +V TW ++ + +K+ +Y
Sbjct: 2 SAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELENVPEPKKLTFMY 61
Query: 63 LANDILQNSKRKGNEFVTEFWKVLPAALKDVVEN-GDDSGKNVVSRLVNIWDERRVFGSR 121
LAND++QNSK+KG E+ E+ VL + E D + R++NIW ER V+ +
Sbjct: 62 LANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDKLLGSLGRILNIWLERGVYDPK 121
Query: 122 ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLC 181
L E P G S K DS + GG+ + S
Sbjct: 122 TIADWRSRLHKEAP------GSSSSSNGK-TNGDSEKPEKEKDHGGSGKPEKSERR---- 170
Query: 182 EQLSEEEEMARCKSVVHRVK--------KMEKDVDIACTNAKDPKRKTLSKELEEEENML 233
E+ E+ ++ K H V+ E+ V + N P L + E EE
Sbjct: 171 EKRKHEDRHSKSKRSRHHVQGSSANSAPPTEEVVSVEPENGHTPPYLPLGEPPEPEE--- 227
Query: 234 KQCIEKLKSVE--ASRVALVSQLKEALHEQESEL 265
I L S+E AS A+V + L ++ SE+
Sbjct: 228 --LIRALTSIENSASSDAVVRERIAKLPQEISEI 259
>UNIPROTKB|H9L0N7 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 OMA:GKGNRGH
EMBL:AADN02044034 EMBL:AADN02015890 EMBL:AADN02015891
EMBL:AADN02015892 EMBL:AADN02015893 EMBL:AADN02015894
EMBL:AADN02044035 EMBL:AADN02044036 EMBL:AADN02044037
EMBL:AADN02044038 EMBL:AADN02044039 EMBL:AADN02044040
EMBL:AADN02044041 EMBL:AADN02044042 EMBL:AADN02058745
EMBL:AADN02058746 EMBL:AADN02058747 EMBL:AADN02058748
Ensembl:ENSGALT00000023620 Uniprot:H9L0N7
Length = 1455
Score = 200 (75.5 bits), Expect = 8.9e-14, Sum P(3) = 8.9e-14
Identities = 75/321 (23%), Positives = 143/321 (44%)
Query: 7 EQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLAND 66
E L KL + T + I+ LS WC+ ++ +V W K S ++ L YLAND
Sbjct: 25 EASLHWKLQAVTNTMESIQGLSSWCLENKRHHNTIVYHWMKWLRRSAFPHRLNLFYLAND 84
Query: 67 ILQNSKRKGN-EFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA-RG 124
++QN KRK F F +VLP A +V+ D S + R+ IW++R V+
Sbjct: 85 VIQNCKRKNAIVFRDTFAEVLPEAAS-LVK--DPSVSKSIERIFKIWEDRNVYPEETILA 141
Query: 125 VKDVMLGG-EVPPPL-EFSGKKRSRPVKIVKRDSR---SIRTKLTVGGAAEKIVSAYHLV 179
+K+ + + L E K+ ++P K + + ++++K+ + ++ L+
Sbjct: 142 LKEALSTTFKTQKQLKETLNKQPNKPWKKSQTSANPKAALKSKIVAEFRPQSLID--ELL 199
Query: 180 LCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEK 239
L ++ ++ E+ + RV + + C K +K SKE EE + L++ +
Sbjct: 200 LYKRSEDQIELKEKQLSTMRVDVCSTET-LKCLKDKTGGKK-FSKEFEEASSKLEEFVNG 257
Query: 240 LKSVEASRVALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLND-EDYVSKP 298
L + +L L+ A E++ + V+ N++K+L+ + + P
Sbjct: 258 LDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVSNLKKKLDQLKATLPDP 317
Query: 299 STTATLSADMNAK---GAQTP 316
+ S M+A G+++P
Sbjct: 318 EESPVPSPSMDAPSPTGSESP 338
Score = 59 (25.8 bits), Expect = 8.9e-14, Sum P(3) = 8.9e-14
Identities = 32/112 (28%), Positives = 48/112 (42%)
Query: 287 KRLNDEDYVSKPSTTATLSADMNAKGAQ--TPKRTAAA-IAAEVADKLTASTSSQMI-MH 342
K N V + TAT S + A PK +AA I++ A L + + +
Sbjct: 408 KTENTPKVVPCTAATATTSVTVTAPAPTPPAPKPVSAAPISSSPALALPNLANVDLAKIS 467
Query: 343 SVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQT--AVSDP 392
S+LS+ + KN G+ AS S P P ++T + P T A S+P
Sbjct: 468 SILSSLTSV-MKNTGVSPASRPSPGTPTSPT-ALTSGLKTPAMGTPSAPSNP 517
Score = 49 (22.3 bits), Expect = 8.9e-14, Sum P(3) = 8.9e-14
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 496 TMLTQQPPGPPSFRPLQPP---GMAF---YGQPPH 524
T + P GPP+ P PP G F + PPH
Sbjct: 1214 TPFPRDPVGPPAGPPAAPPKDHGSLFPRDHSVPPH 1248
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 371 IPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQP-- 428
I S+ ++ K + QTA + + QS++ QS +T Q T + A +T P
Sbjct: 527 ITPESILSALSKTQTQTAPALQGLSSLLQSVAGNTIQSSETA--SQSTSASPANTTVPCL 584
Query: 429 QYHMLPNSSSQQYLQPSGG 447
+ +P S++Q ++ + G
Sbjct: 585 KGRNIP-SNTQSFVSKNFG 602
Score = 43 (20.2 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 502 PPGPPSFRPLQPPGMAFYGQPP 523
PP PP P + G+ F QPP
Sbjct: 1288 PPPPPV--PGEHAGVPFPSQPP 1307
Score = 43 (20.2 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 298 PSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAG 357
PS + A++ +K TP+ +A++ K T+ + LS+ A N
Sbjct: 511 PSAPSNPLANILSKVEITPESILSALS-----KTQTQTAPAL---QGLSSLLQSVAGNT- 561
Query: 358 LVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQS 408
+ + TAS S PAN+ ++P + + S+ F+ +++ PN S
Sbjct: 562 IQSSETASQSTSASPANT---TVPCLKGRNIPSNTQSFV-SKNFGYSPNSS 608
>UNIPROTKB|Q5VT52 [details] [associations]
symbol:RPRD2 "Regulation of nuclear pre-mRNA
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] EMBL:CH471121 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 EMBL:AL356356 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG331230 EMBL:AL611942 EMBL:AK056707 EMBL:AK291703
EMBL:BX641025 EMBL:BX284695 EMBL:BC045623 EMBL:AF161362
EMBL:AB007929 IPI:IPI00384541 IPI:IPI00639879 IPI:IPI00647267
IPI:IPI00760919 PIR:T00074 RefSeq:NP_056018.2 UniGene:Hs.213666
PDB:4FLB PDBsum:4FLB ProteinModelPortal:Q5VT52 SMR:Q5VT52
IntAct:Q5VT52 MINT:MINT-1603162 PhosphoSite:Q5VT52 DMDM:74746888
PaxDb:Q5VT52 PRIDE:Q5VT52 DNASU:23248 Ensembl:ENST00000369067
Ensembl:ENST00000369068 Ensembl:ENST00000401000
Ensembl:ENST00000579067 Ensembl:ENST00000584319
Ensembl:ENST00000584841 GeneID:23248 KEGG:hsa:23248 UCSC:uc001eup.4
UCSC:uc009wlr.3 CTD:23248 GeneCards:GC01P150335 H-InvDB:HIX0019981
HGNC:HGNC:29039 HPA:HPA045778 MIM:614695 neXtProt:NX_Q5VT52
PharmGKB:PA162402062 HOVERGEN:HBG104176 InParanoid:Q5VT52
OMA:GKGNRGH ChiTaRS:RPRD2 GenomeRNAi:23248 NextBio:44942
ArrayExpress:Q5VT52 Bgee:Q5VT52 CleanEx:HS_RPRD2
Genevestigator:Q5VT52 GermOnline:ENSG00000163125 Uniprot:Q5VT52
Length = 1461
Score = 226 (84.6 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 98/430 (22%), Positives = 171/430 (39%)
Query: 7 EQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLAND 66
E L K + T + I+ LS WCI ++ +V W K S ++ L YLAND
Sbjct: 24 ESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLAND 83
Query: 67 ILQNSKRKGNEFVTE-FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGV 125
++QN KRK E F VLP A +V+ D S V R+ IW++R V+
Sbjct: 84 VIQNCKRKNAIIFRESFADVLPEAAA-LVK--DPSVSKSVERIFKIWEDRNVYPEEMIVA 140
Query: 126 KDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHL-VLCEQL 184
L + +P K K+ S K + KIV+ + L E+L
Sbjct: 141 LREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAAL---KSKIVAEFRSQALIEEL 197
Query: 185 ---SEEEEMARCKSVVHRVKKMEKDV----DIACTNAKDPKRKTLSKELEEEENMLKQCI 237
E+ K ++ M DV + C K +K SKE EE + L++ +
Sbjct: 198 LLYKRSEDQIELKE--KQLSTMRVDVCSTETLKCLKDKTGGKK-FSKEFEEASSKLEEFV 254
Query: 238 EKLKSVEASRVALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLND-EDYVS 296
L + +L L+ A E++ + V+ N++K+L+ + +
Sbjct: 255 NGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLP 314
Query: 297 KPSTTATLSADMNAK---GAQTPKRTAAAIAAE--VADKLTASTSSQMIMHSVLSTFAAQ 351
P + S M+A G+++P + ++ + ++T + + +
Sbjct: 315 DPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRDVEDMELS 374
Query: 352 EAKNAGLVKASTASNSFPPIPANSVTESIP-KPEKQTAVSDPNMFLPAQSLSTPP-NQSY 409
+ ++ G K P ++V+ S+P KP + + + +P +TPP +
Sbjct: 375 DVEDDGS-KIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATPPLPKPV 433
Query: 410 QTVLVPQPTM 419
T L P P +
Sbjct: 434 NTSLSPSPAL 443
Score = 41 (19.5 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 389 VSDPNMFLPAQSLSTPP--NQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSG 446
+ P P+ + S PP ++SY P + + ST Y S Y QPS
Sbjct: 756 IISPGSSTPSSTRSPPPGRDESY-------PRELSNSVST---YRPFGLGSESPYKQPSD 805
Query: 447 GIMTP 451
G+ P
Sbjct: 806 GMERP 810
Score = 38 (18.4 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 501 QPP---GPPSFRPLQP 513
+PP GPP F P +P
Sbjct: 1440 RPPFARGPPFFAPKRP 1455
>CGD|CAL0000943 [details] [associations]
symbol:orf19.7662 species:5476 "Candida albicans" [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0010526 "negative regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0031124 "mRNA 3'-end
processing" evidence=IEA] CGD:CAL0000943 EMBL:AACQ01000032
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 RefSeq:XP_719421.1
ProteinModelPortal:Q5ACI0 GeneID:3638998 KEGG:cal:CaO19.7662
HOGENOM:HOG000246863 Uniprot:Q5ACI0
Length = 335
Score = 184 (69.8 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 48/138 (34%), Positives = 71/138 (51%)
Query: 5 FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLV--QKVPLLY 62
FS KL L+ TQ+ I ++S W +FH+ + W + +++ LLY
Sbjct: 3 FSATAFKFKLDTLSDTQESIVSISQWVLFHQKYYKESAKIWLNYITQDSITPAKRLSLLY 62
Query: 63 LANDILQNSKRKGN-EFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR 121
L ND++Q ++RK EF+ EF KVLP AL G+ + K V RL+N+W+ER++F
Sbjct: 63 LCNDVVQQARRKNKPEFINEFNKVLPDALSK--NYGNLNPK--VDRLLNVWEERKIFTED 118
Query: 122 ARGVKDVMLGGEVPPPLE 139
L E P PLE
Sbjct: 119 EIANMKASLEAE-PKPLE 135
Score = 53 (23.7 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 20/100 (20%), Positives = 45/100 (45%)
Query: 174 SAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNA--KDPKRKTLSKELEEEEN 231
S ++L++ +++ ++A + + K+ +DV++ A D + EEEE
Sbjct: 223 SLFNLIIDGTKTDDSKIANINEKIQKAKETIRDVNLTSMEAGSDDDDFPGYLSDSEEEEE 282
Query: 232 MLKQCIEKLKS---VEASRVALVSQLKEALHEQESELENV 268
K+ + + S + RVA ++ E++ E+V
Sbjct: 283 TKKRRLSQTPSGGSTPSKRVAFSEDVEVFEDPDENKEESV 322
>WB|WBGene00015347 [details] [associations]
symbol:cids-1 species:6239 "Caenorhabditis elegans"
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
EMBL:FO080288 PIR:S44606 RefSeq:NP_498807.2
ProteinModelPortal:P34281 SMR:P34281 PaxDb:P34281
EnsemblMetazoa:C02F5.4 GeneID:176162 KEGG:cel:CELE_C02F5.4
CTD:176162 WormBase:C02F5.4 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 InParanoid:P34281 KO:K15559
OMA:KKKGPEY NextBio:891390 GO:GO:0031124 Uniprot:P34281
Length = 315
Score = 193 (73.0 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 61/279 (21%), Positives = 135/279 (48%)
Query: 5 FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATW----DKQFHSSQLVQKVPL 60
F+EQ L +KL+ L+ I+T S W + + S EL++ W K+ H S++V L
Sbjct: 4 FTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVN---L 60
Query: 61 LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVE--NGDDSGKNVVSRLVNIWDERRVF 118
LY+AND+ QN+++ +F EF+ + ++ + +E N + ++ + +L+N+W +R++F
Sbjct: 61 LYVANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEV-EHAIGKLINVWKDRQIF 119
Query: 119 G-SRARGVKDV----MLGGEVPPPLEFSGK--KRSRPVKIVKRDSRSIRTKLTVGGAAEK 171
S+ + + +V L G P P + + K ++P + V +++ + + +
Sbjct: 120 TPSQCKRLHEVHQQVKLSGSFPTPAVANKEHGKVAQPSQFVVEEAKKNAQDVLLSLKRLQ 179
Query: 172 IVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKD-PKRKTLSKELEEEE 230
+ + +LS+ + C + V+ ++ + N + P + K L+ E
Sbjct: 180 NPPSTEREIRTELSKYPDNISCPEKLQSVRSSQEAQSLLVQNEEALPMLEEYVKRLKNET 239
Query: 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269
N E+ +++E++ L+ ++ ++ E V+
Sbjct: 240 N------ER-ETLESNLNMLIENVRMSIEHHEKLCREVK 271
>UNIPROTKB|P34281 [details] [associations]
symbol:cids-1 "CID domain-containing protein 1"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:FO080288 PIR:S44606 RefSeq:NP_498807.2
ProteinModelPortal:P34281 SMR:P34281 PaxDb:P34281
EnsemblMetazoa:C02F5.4 GeneID:176162 KEGG:cel:CELE_C02F5.4
CTD:176162 WormBase:C02F5.4 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 InParanoid:P34281 KO:K15559
OMA:KKKGPEY NextBio:891390 GO:GO:0031124 Uniprot:P34281
Length = 315
Score = 193 (73.0 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 61/279 (21%), Positives = 135/279 (48%)
Query: 5 FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATW----DKQFHSSQLVQKVPL 60
F+EQ L +KL+ L+ I+T S W + + S EL++ W K+ H S++V L
Sbjct: 4 FTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVN---L 60
Query: 61 LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVE--NGDDSGKNVVSRLVNIWDERRVF 118
LY+AND+ QN+++ +F EF+ + ++ + +E N + ++ + +L+N+W +R++F
Sbjct: 61 LYVANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEV-EHAIGKLINVWKDRQIF 119
Query: 119 G-SRARGVKDV----MLGGEVPPPLEFSGK--KRSRPVKIVKRDSRSIRTKLTVGGAAEK 171
S+ + + +V L G P P + + K ++P + V +++ + + +
Sbjct: 120 TPSQCKRLHEVHQQVKLSGSFPTPAVANKEHGKVAQPSQFVVEEAKKNAQDVLLSLKRLQ 179
Query: 172 IVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKD-PKRKTLSKELEEEE 230
+ + +LS+ + C + V+ ++ + N + P + K L+ E
Sbjct: 180 NPPSTEREIRTELSKYPDNISCPEKLQSVRSSQEAQSLLVQNEEALPMLEEYVKRLKNET 239
Query: 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269
N E+ +++E++ L+ ++ ++ E V+
Sbjct: 240 N------ER-ETLESNLNMLIENVRMSIEHHEKLCREVK 271
>ZFIN|ZDB-GENE-030131-6641 [details] [associations]
symbol:rprd2a "regulation of nuclear pre-mRNA
domain containing 2a" species:7955 "Danio rerio" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-030131-6641 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 EMBL:BC056830 IPI:IPI00502548
RefSeq:NP_956216.1 UniGene:Dr.80327 ProteinModelPortal:Q6PGU3
PRIDE:Q6PGU3 GeneID:334701 KEGG:dre:334701 CTD:334701
HOVERGEN:HBG097713 InParanoid:Q6PGU3 NextBio:20810517 Bgee:Q6PGU3
Uniprot:Q6PGU3
Length = 1113
Score = 198 (74.8 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 103/448 (22%), Positives = 174/448 (38%)
Query: 7 EQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLAND 66
E L + ++ T + I+ LS WCI ++ ++V W K S ++ L YLAND
Sbjct: 20 ESTLDRRFQTVSNTMESIQGLSTWCIENKKFHSVIVKYWIKWLRKSDASHRLNLFYLAND 79
Query: 67 ILQNSKRKGNEFV--TEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARG 124
++QN KRK N V T F +LP A+ + D K V R+++IW+ER V+
Sbjct: 80 VIQNCKRK-NAIVYRTTFTDLLPEAMHLIRATKDAKVKKSVERILSIWEERNVYSE---- 134
Query: 125 VKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAY--HLVLCE 182
E L S ++ PVK+ S ++ L AE + S + HL
Sbjct: 135 --------EFISQLRNSLARKEEPVKVQPAPVNS-KSALKSKIVAEFVPSTFIEHLSKYR 185
Query: 183 QLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKR-KTLSKELEEEENMLKQCIEKLK 241
+ +E E+ + RV + A KD K SK+ E+ L++ + L
Sbjct: 186 KSMDEIELKEKQLAAMRVDVCSTE---ALKKLKDKAGGKRFSKDFEDGSMKLQEFVSFLD 242
Query: 242 SVEASRVALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLN-DEDYVSKPST 300
AL+ L+ A E + + V+ +++++L+ + + P
Sbjct: 243 GEVKKGPALMEALENADIFYEMQYKEVKIVAKAYETFANRVSHLKRKLDAQKTMIPDPDD 302
Query: 301 TATLSADMNAK---GAQTPKRTAAAIAAEVADKLTASTSSQMIM----HSVLSTFAAQEA 353
+ S +A G+++P I D + + S LS+
Sbjct: 303 SPIPSPIEDAPSPTGSESPFHALERIGTPDPDLDGQAMEEDLFALADAPSPLSSSGGSPP 362
Query: 354 KNAGLVKASTASNSFPPIPANSVTES----IPKPEKQTAVSDPNMFLPAQSLSTPPNQSY 409
+ + + TE+ + + E QT VS + P + S P N+
Sbjct: 363 PSVSMGDKDNRDVEDMELSDAEETETPAIIVEECEAQTVVSKESPVTPNVTESLPTNEVT 422
Query: 410 QTVLVPQPTMQNQARSTQPQYHMLPNSS 437
QT + P +T PQ + P SS
Sbjct: 423 QTEKIATPP------ATAPQ--LAPQSS 442
>POMBASE|SPBC337.03 [details] [associations]
symbol:rhn1 "RNA polymerase II transcription termination
factor homolog" species:4896 "Schizosaccharomyces pombe"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030846
"termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=ISO] [GO:0071276 "cellular response to cadmium ion"
evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] PomBase:SPBC337.03 GO:GO:0005829 GO:GO:0005634
EMBL:CU329671 GO:GO:0071276 GO:GO:0071585 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 KO:K15559 GO:GO:0030846 OMA:ASESCKG
OrthoDB:EOG4X0R2T PIR:T40256 RefSeq:NP_595404.1
ProteinModelPortal:O74814 EnsemblFungi:SPBC337.03.1 GeneID:2540220
KEGG:spo:SPBC337.03 NextBio:20801352 Uniprot:O74814
Length = 387
Score = 183 (69.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 61/244 (25%), Positives = 117/244 (47%)
Query: 10 LAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQ 69
++ KL+ LN TQ+ I ++HW +FH+ A+ +V W + + S +K+ LLYL N+++Q
Sbjct: 8 VSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLNEVVQ 67
Query: 70 NSK-RKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDV 128
S+ +K +E++ + ++ D + S K + + ++W +R +F K++
Sbjct: 68 QSRVKKISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDVWCQRGIFS------KEI 121
Query: 129 MLG-GEVPPPLEFSGKKRSRPV---KIVKRDSRSIRTKLTVGGA--AEKIVSAYHLVLCE 182
+L E E SG PV + +T L A + +V A + E
Sbjct: 122 LLSLQERFNNAENSGHSNYYPVGPPEWAPYTRLMTQTSLYAKSAHSTKTVVDALYKSYLE 181
Query: 183 QLSEEEEMA-RCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK 241
+ S+ E+ K +++ + K AC ++ +L +EE++ +L + E LK
Sbjct: 182 KQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEESLK 241
Query: 242 SVEA 245
SVE+
Sbjct: 242 SVES 245
>MGI|MGI:1922387 [details] [associations]
symbol:Rprd2 "regulation of nuclear pre-mRNA domain
containing 2" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] MGI:MGI:1922387 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 eggNOG:NOG331230 CTD:23248
HOVERGEN:HBG104176 OMA:GKGNRGH ChiTaRS:RPRD2 EMBL:BC067054
EMBL:AK129150 EMBL:AK154692 IPI:IPI00454123 IPI:IPI00762512
RefSeq:NP_001074762.1 UniGene:Mm.196275 ProteinModelPortal:Q6NXI6
SMR:Q6NXI6 PhosphoSite:Q6NXI6 PaxDb:Q6NXI6 PRIDE:Q6NXI6
Ensembl:ENSMUST00000090791 GeneID:75137 KEGG:mmu:75137
UCSC:uc008qkx.1 UCSC:uc008qky.1 HOGENOM:HOG000154192
InParanoid:Q6NXI6 OrthoDB:EOG4XSKQN NextBio:342303 Bgee:Q6NXI6
Genevestigator:Q6NXI6 GermOnline:ENSMUSG00000028106 Uniprot:Q6NXI6
Length = 1469
Score = 157 (60.3 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 39/113 (34%), Positives = 56/113 (49%)
Query: 7 EQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLAND 66
E L K + T + I+ LS WCI ++ +V W K S ++ L YLAND
Sbjct: 24 ESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLAND 83
Query: 67 ILQNSKRKGNEFVTE-FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
++QN KRK E F VLP A +V+ D S + R+ IW++R V+
Sbjct: 84 VIQNCKRKNAIIFRESFADVLPEAAA-LVK--DPSVSKSIERIFKIWEDRNVY 133
Score = 73 (30.8 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 58/292 (19%), Positives = 113/292 (38%)
Query: 147 RPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHL-VLCEQL---SEEEEMARCKSVVHRVKK 202
+P K K+ S K + KIV+ + L E+L E+ K ++
Sbjct: 180 QPNKQWKKSQTSTNPKAAL---KSKIVAEFRSQALIEELLMYKRSEDQIELKE--KQLST 234
Query: 203 MEKDV----DIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEAL 258
M DV + C K +K SKE EE + L++ + L + +L L+ A
Sbjct: 235 MRVDVCSTETLKCLKDKTGGKK-FSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAG 293
Query: 259 HEQESELENVRTXXXXXXXXXXXXCNMRKRLND-EDYVSKPSTTATLSADMNAK---GAQ 314
E++ + V+ N++K+L+ + + P + S M+A G++
Sbjct: 294 IFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGSE 353
Query: 315 TPKRTAAA----IAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPP 370
+P + A +DK ++T + + + + ++ G K P
Sbjct: 354 SPFQGMGGEEPQSPAMESDK--SATPEPVTDNRDVEDMELSDVEDDGS-KIIVEDRKEKP 410
Query: 371 IPANSVTESIP-KPEKQTAVSDPNMFLPAQSLSTPP-NQSYQTVLV-PQPTM 419
+ +V+ +P K + + + P + + PP + T L+ P PT+
Sbjct: 411 VEKPAVSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSPTL 462
Score = 58 (25.5 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 32/147 (21%), Positives = 61/147 (41%)
Query: 296 SKPSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKN 355
S+PS S + G +TP +A+ L+ + + S LS Q A
Sbjct: 495 SRPSPGIPTSPSNLSSGLKTPAPATTPSHNPLANILSKVEITPESILSALSKTQTQSAPA 554
Query: 356 AGLVKASTASNSFPPIPANSVTE--SIPKPEKQT--AVSDPNMFLPAQSLSTPPNQSYQ- 410
+ + S + P+PA+ VT + P T AV N+ QS P + +Y
Sbjct: 555 LQGLSSLLQSVTANPVPASEVTSQSTTASPASTTGSAVKGRNLLSSTQSF-IPKSFNYSP 613
Query: 411 TVLVPQPTMQNQARSTQPQYHMLPNSS 437
+ + + + ++++ Q +LP+++
Sbjct: 614 SSSTSEVSSTSASKASVGQSPVLPSTT 640
Score = 55 (24.4 bits), Expect = 8.3e-09, Sum P(4) = 8.3e-09
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 295 VSKPSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMI--MHSVLSTFAAQE 352
VSK S A S A PK + A+ + + + ++ + + S+LS+ +
Sbjct: 428 VSKASPCAPPSVPTTA-APPLPKPLSTALLSPSPTLVLPNLANVDLAKISSILSSLTSV- 485
Query: 353 AKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVS 390
KN G+ AS S P P+N ++ + P T S
Sbjct: 486 MKNTGVSSASRPSPGIPTSPSN-LSSGLKTPAPATTPS 522
Score = 53 (23.7 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 389 VSDPNMFLPAQSLSTPP--NQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSG 446
+ P P+ + S PP ++SY PQ + N + +P + + S Y QPSG
Sbjct: 775 IISPGSSTPSSTRSPPPGRDESY-----PQE-LPNSVSTYRP-FGL---GSDSPYKQPSG 824
Query: 447 GIMTP 451
G+ P
Sbjct: 825 GVERP 829
Score = 50 (22.7 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 37/173 (21%), Positives = 61/173 (35%)
Query: 298 PSTTATLSADMNAKGAQTPKRTAAAIAAEVA----DKLTASTSSQMIMHSVLSTFAAQEA 353
PS++ + N A P A ++EV+ + + S S +M +H+ L
Sbjct: 644 PSSSLGFTGTHNPSPAAPPTEVAVCQSSEVSKPKPESESTSPSLEMKIHNFLKGNPGFSG 703
Query: 354 KNAGLVKASTASNSFPPIPANSVTESIPKPEKQ-----TAVSDPNMFLPAQS--LSTPPN 406
N + S+ +S P S + P T V D P Q + P +
Sbjct: 704 LNLNIPILSSLGSSAPSEGHASDFQRGPTSTSVDSIDGTPVRDERSGTPTQDEMMDKPTS 763
Query: 407 QSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQP-SGGIMT--PYGYGS 456
S T+ + + + ST P + Y Q + T P+G GS
Sbjct: 764 SSVDTMSLLSKII-SPGSSTPSSTRSPPPGRDESYPQELPNSVSTYRPFGLGS 815
Score = 49 (22.3 bits), Expect = 6.2e-07, Sum P(3) = 6.2e-07
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 374 NSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQPQ 429
+ + ++P PE ++ V P+M P+ + S P Q P M++ +S P+
Sbjct: 325 DQLKSTLPDPE-ESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESD-KSATPE 378
Score = 43 (20.2 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 139 EFSGKKRSRPVKIVKRDSRSI--RTKLTVGGAAEKIVSAYH 177
E+SG S + + K+ ++SI +KL+ + I+S+Y+
Sbjct: 856 EYSGPPPSAMMNLEKKPAKSILKSSKLSDATEYQPILSSYN 896
Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 501 QPP---GPPSFRPLQP 513
+PP GPP F P +P
Sbjct: 1448 RPPFVRGPPFFAPKRP 1463
Score = 37 (18.1 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 16/62 (25%), Positives = 23/62 (37%)
Query: 360 KASTASNSFPPIPANSVTESIPKPEKQTA---VSDPNMFLPAQSLSTPPNQSYQTVLVPQ 416
+AS A PP P P P +S +P + + PP + +VP
Sbjct: 1265 EASLAHAGPPPPPGEHSGVPFPPPPPPPPPGELSSGGTGVPFATPAPPPPPVDHSGVVPF 1324
Query: 417 PT 418
PT
Sbjct: 1325 PT 1326
>UNIPROTKB|I3LG94 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
OMA:GKGNRGH EMBL:FP312851 Ensembl:ENSSSCT00000022559 Uniprot:I3LG94
Length = 1477
Score = 156 (60.0 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 39/113 (34%), Positives = 56/113 (49%)
Query: 7 EQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLAND 66
E L K + T + I+ LS WCI ++ +V W K S ++ L YLAND
Sbjct: 24 ESSLDRKFQSVTNTMESIQGLSSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLAND 83
Query: 67 ILQNSKRKGNEFVTE-FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
++QN KRK E F VLP A +V+ D S + R+ IW++R V+
Sbjct: 84 VIQNCKRKNAIIFRESFADVLPEAAA-LVK--DPSVSKSIERIFKIWEDRNVY 133
Score = 86 (35.3 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 47/271 (17%), Positives = 110/271 (40%)
Query: 158 SIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDP 217
++++K+ ++ ++ L+L ++ ++ E+ + RV + + C K
Sbjct: 197 ALKSKIVAEFRSQALIE--ELLLYKRSEDQIELKEKQLSTMRVDVCSTET-LKCLKDKTG 253
Query: 218 KRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTXXXXXXX 277
+K SKE EE L++ + L + +L L+ A E++ + V+
Sbjct: 254 GKK-FSKEFEEASAKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKT 312
Query: 278 XXXXXCNMRKRLND-EDYVSKPSTTATLSADMNAK---GAQTPKRTAAAIAAE--VADKL 331
N++K+L+ + + P + S M+A G+++P + ++ +
Sbjct: 313 FANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTVESE 372
Query: 332 TASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIP-KPEKQTAVS 390
++T + + + ++ G K P+ ++V+ SIP KP + + +
Sbjct: 373 KSATPEPATDNRDVEDMELSDVEDDGS-KIIVEDRKEKPVEKSAVSTSIPTKPTESISKA 431
Query: 391 DPNMFLPAQSLSTPP--NQSYQTVLVPQPTM 419
+P TPP + ++L P P +
Sbjct: 432 SSCTPVPVTMTVTPPLPKPANTSLLSPTPAL 462
Score = 57 (25.1 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 39/174 (22%), Positives = 68/174 (39%)
Query: 298 PSTTATLSADMNAKGAQTPKRTAAAIAAEVAD-KLTASTSS---QMIMHSVLSTFAAQEA 353
PS T ++ N A P A ++E++ KL + ++S +M +H+ L
Sbjct: 644 PSNTLGFTSTHNTSPAAPPTEVAMCQSSEISKPKLESESTSPSLEMKIHNFLKGNPGFSG 703
Query: 354 KNAGLVKASTASNSFPPI--PAN----SVTESIPKPEKQTAVSDPNMFLPAQS--LSTPP 405
N + S+ +S P P++ + SI + T V D P Q + P
Sbjct: 704 LNLNIPILSSLGSSAPTESHPSDFQRGPTSTSIDNIDG-TPVRDERSGTPTQDEMMDKPT 762
Query: 406 NQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQP-SGGIMT--PYGYGS 456
+ S T+ + + + ST P + Y + S + T P+G GS
Sbjct: 763 SSSVDTMSLLSKII-SPGSSTPSSTRSPPPGREESYPRELSNSLSTYRPFGLGS 815
Score = 53 (23.7 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 343 SVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVS 390
S+LS+ + KN G+ AS S P P+N +T + P T S
Sbjct: 477 SILSSLTSV-MKNTGVSPASRPSPGTPTSPSN-LTSGLKTPVPATTTS 522
Score = 52 (23.4 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 374 NSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQPQ 429
+ + ++P PE ++ V P+M P+ + S P Q PT++++ +S P+
Sbjct: 325 DQLKSTLPDPE-ESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTVESE-KSATPE 378
Score = 44 (20.5 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 25/110 (22%), Positives = 39/110 (35%)
Query: 296 SKPSTTATLSADMNAKGAQTP---KRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQE 352
S+PS S G +TP T+ A + K+ + S + S T +A
Sbjct: 495 SRPSPGTPTSPSNLTSGLKTPVPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPA 554
Query: 353 AKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLS 402
+ + S N P A S + S P T + LP+ + S
Sbjct: 555 LQGLSSLLQSVTGNPVPSSEAASQSTSA-SPANTTVSNIKGRNLPSNTQS 603
Score = 43 (20.2 bits), Expect = 3.7e-06, Sum P(4) = 3.7e-06
Identities = 29/147 (19%), Positives = 56/147 (38%)
Query: 296 SKPSTTATLSADMNAKGAQTPKRTAAAIA--------AEVADKLTASTSSQMIMHS--VL 345
+ P+ T T+S N KG P T + I+ + ++ + S S I S +
Sbjct: 582 ASPANT-TVS---NIKGRNLPSNTQSFISKGFSYSPNSSTSEVSSTSASKASIGQSPGLP 637
Query: 346 STFAAQEAKNAGLVKASTASNSFPPIP-ANSVTESIPKPEKQTAVSDPNMFLPAQSLSTP 404
ST + G S + PP A + I KP+ ++ + P++ + +
Sbjct: 638 STTFKLPSNTLGFTSTHNTSPAAPPTEVAMCQSSEISKPKLESESTSPSLEMKIHNF-LK 696
Query: 405 PNQSYQTVLVPQPTMQNQARSTQPQYH 431
N + + + P + + S + H
Sbjct: 697 GNPGFSGLNLNIPILSSLGSSAPTESH 723
Score = 41 (19.5 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 16/63 (25%), Positives = 23/63 (36%)
Query: 389 VSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGI 448
+ P P+ + S PP + P + + ST Y S Y QPS G+
Sbjct: 775 IISPGSSTPSSTRSPPPGREES-----YPRELSNSLST---YRPFGLGSESPYKQPSDGM 826
Query: 449 MTP 451
P
Sbjct: 827 ERP 829
Score = 39 (18.8 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 237 IEKLKSVEASRVALVSQLKEALHEQESE 264
++KLK + QLKE L++Q ++
Sbjct: 156 LQKLKCFPGTTFKTQKQLKENLNKQPNK 183
Score = 38 (18.4 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 501 QPP---GPPSFRPLQP 513
+PP GPP F P +P
Sbjct: 1456 RPPFARGPPFFAPKRP 1471
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 126 KDVMLGGEVPPPLEFSG 142
K+ L PPP E SG
Sbjct: 1264 KEAALAHAAPPPGEHSG 1280
>UNIPROTKB|G3MX56 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
OMA:GKGNRGH EMBL:DAAA02007262 Ensembl:ENSBTAT00000063685
Uniprot:G3MX56
Length = 1485
Score = 156 (60.0 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 39/113 (34%), Positives = 56/113 (49%)
Query: 7 EQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLAND 66
E L K + T + I+ LS WCI ++ +V W K S ++ L YLAND
Sbjct: 24 ESSLDRKFQSVTNTMESIQGLSSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLAND 83
Query: 67 ILQNSKRKGNEFVTE-FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
++QN KRK E F VLP A +V+ D S + R+ IW++R V+
Sbjct: 84 VIQNCKRKNAIIFRESFADVLPEAAA-LVK--DPSVSKSIERIFKIWEDRNVY 133
Score = 79 (32.9 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 44/271 (16%), Positives = 110/271 (40%)
Query: 158 SIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDP 217
++++K+ ++ ++ L+L ++ ++ E+ + RV + + C K
Sbjct: 202 ALKSKIVAEFRSQALIE--ELLLYKRSEDQIELKEKQLSTMRVDVCSTET-LKCLKDKTG 258
Query: 218 KRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTXXXXXXX 277
+K SKE EE L++ + L + +L L+ A E++ + V+
Sbjct: 259 GKK-FSKEFEEASAKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKT 317
Query: 278 XXXXXCNMRKRLND-EDYVSKPSTTATLSADMNAK---GAQTPKRTAAAIAAEV--ADKL 331
N++K+L+ + + P + S ++A G+++P + ++ A+
Sbjct: 318 FANRVNNLKKKLDQLKSTLPDPEESPVPSPSVDAPSPTGSESPFQGMGGEESQSPNAESE 377
Query: 332 TASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIP-KPEKQTAVS 390
++T + + + ++ G + P+ ++V+ ++P KP + + +
Sbjct: 378 KSATPEPATDNRDVEDMDLSDVEDDGSKIIAVEDRKEKPVEKSTVSTAVPTKPTESISKA 437
Query: 391 DPNMFLPAQSLSTPP--NQSYQTVLVPQPTM 419
P +TPP ++L P P +
Sbjct: 438 SSCTPAPVTMTATPPLPKPVNTSLLSPTPAL 468
Score = 52 (23.4 bits), Expect = 3.2e-07, Sum P(4) = 3.2e-07
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 343 SVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVS 390
S+LS+ + AG+ AS S P P+ S+T + P T S
Sbjct: 483 SILSSLTSVMKNTAGVSPASRPSPGTPTSPS-SLTSGLKTPAPATTTS 529
Score = 51 (23.0 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 37/173 (21%), Positives = 62/173 (35%)
Query: 298 PSTTATLSADMNAKGAQTPKRTAAAIAAEVAD-KLTASTSS---QMIMHSVLSTFAAQEA 353
PS T + + +A A P A ++E + KL + ++S +M +H+ L
Sbjct: 651 PSNTLGFTGNHSASPAAPPTEVAMCQSSEASKPKLESESTSPSLEMKIHNFLKGNPGFSG 710
Query: 354 KNAGLVKASTASNSFPPIPANSVTESIPKPEKQ-----TAVSDPNMFLPAQS--LSTPPN 406
N + S+ +S P S + P T V D P Q + P +
Sbjct: 711 LNLNIPILSSLGSSAPAESHPSDFQRGPTSTSVDNIDGTPVRDERSGTPTQDEMMDKPTS 770
Query: 407 QSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQY---LQPSGGIMTPYGYGS 456
S T+ + + + ST P + + L S P+G GS
Sbjct: 771 SSVDTMSLLSKII-SPGSSTPSSTRSPPPGREESFPRELSSSVSTFRPFGLGS 822
Score = 49 (22.3 bits), Expect = 8.3e-07, Sum P(3) = 8.3e-07
Identities = 25/112 (22%), Positives = 41/112 (36%)
Query: 296 SKPSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKN 355
S+PS S G +TP +A+ L+ + + S LS Q A
Sbjct: 502 SRPSPGTPTSPSSLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPA 561
Query: 356 AGLVKASTASNSFPPIPANSVT--ESIPKPEKQTAVSDPNMFLPAQSLSTPP 405
+ + S + P+P++ T + P T S LP+ + S P
Sbjct: 562 LQGLSSLLQSVTGNPVPSSEATPQSTSASPANTTVSSIKGRNLPSNTQSFIP 613
Score = 41 (19.5 bits), Expect = 3.2e-07, Sum P(4) = 3.2e-07
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 384 EKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQP----TMQNQARSTQPQYHMLPNSSSQ 439
+K T+ S M L ++ +S P + + + P P + + S+ + S
Sbjct: 766 DKPTSSSVDTMSLLSKIIS-PGSSTPSSTRSPPPGREESFPRELSSSVSTFRPFGLGSDS 824
Query: 440 QYLQPSGGIMTP 451
Y QPS G+ P
Sbjct: 825 PYKQPSDGMERP 836
Score = 38 (18.4 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 501 QPP---GPPSFRPLQP 513
+PP GPP F P +P
Sbjct: 1464 RPPFARGPPFFAPKRP 1479
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 370 PIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTP-PNQSYQTVLVPQP 417
P+ +S + PK D LP+ LS P ++ T P P
Sbjct: 1235 PVGPSSAPPAPPKDHGGIFSRDAPTHLPSVDLSNPFAKEAALTHAAPPP 1283
>ASPGD|ASPL0000042222 [details] [associations]
symbol:AN2049 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0071585
"detoxification of cadmium ion" evidence=IEA] [GO:0071276 "cellular
response to cadmium ion" evidence=IEA] EMBL:BN001307
EMBL:AACD01000032 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577 KO:K15559
OrthoDB:EOG4X0R2T RefSeq:XP_659653.1 ProteinModelPortal:Q5BBN1
EnsemblFungi:CADANIAT00008718 GeneID:2875473 KEGG:ani:AN2049.2
HOGENOM:HOG000190337 OMA:IVTVAQW Uniprot:Q5BBN1
Length = 414
Score = 170 (64.9 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 33/115 (28%), Positives = 64/115 (55%)
Query: 5 FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLA 64
+++ + KLS LN TQ+ I T++ W +FHR AE W ++ S +++ L+YLA
Sbjct: 3 YTDDSVKAKLSALNETQEGIVTVAQWVMFHRRHAERTAQLWLQKLRDSPAAKRLNLIYLA 62
Query: 65 NDILQNSK-RKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
N++ Q S+ R+ +F+ F ++ A+ + + + + R+V +W +R +F
Sbjct: 63 NEVAQQSRARRKEDFLIAFSPIIAEAVAIAYKGASNDIQQKLRRVVEVWRQRNIF 117
>WB|WBGene00009451 [details] [associations]
symbol:cids-2 species:6239 "Caenorhabditis elegans"
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
GO:GO:0040027 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GO:GO:0031124 EMBL:Z81077
UniGene:Cel.7194 GeneID:172691 KEGG:cel:CELE_F36A2.1 UCSC:F36A2.1a
CTD:172691 HOGENOM:HOG000290228 NextBio:876603
RefSeq:NP_001122472.1 ProteinModelPortal:A5Z2V1 SMR:A5Z2V1
STRING:A5Z2V1 EnsemblMetazoa:F36A2.1d WormBase:F36A2.1d
InParanoid:A5Z2V1 OMA:EAIETMS ArrayExpress:A5Z2V1 Uniprot:A5Z2V1
Length = 664
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 79/399 (19%), Positives = 160/399 (40%)
Query: 18 NCTQQCIETLSHWCIFHRSKA--ELVVATWDKQFHSSQLVQK-VPLLYLANDILQNSKRK 74
N TQ+ IET+S W + ++ A +L+V W F ++ K + L Y+ ND++Q +K K
Sbjct: 20 NPTQEAIETMSMWIMHYKDNASIDLIVDGWLNCFKTAGTDNKRIALFYVMNDVVQKAKMK 79
Query: 75 GNEFVTEFWKVLPAALKDV-VENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVMLGGE 133
+ + ++ PA L V + D K V+ R + I+ R VF + + +L +
Sbjct: 80 HADTLIPAFQ--PAVLTAVGIGRKQDKVKAVMKRCIQIFKSRNVFSPASTTAMENLLASD 137
Query: 134 VPPPLEFSGKKRSRPVK-IVKRDSRSIRTKLTVGGAAEKIVSAY--HLVLCEQ-LSEEEE 189
E + +VK+ + I + V + + + +C+ + + EE
Sbjct: 138 ADEGYEAEDQALEVDSDDLVKKITNFISARNVVADMMKCVNEGNFDYKEMCKHGMRDREE 197
Query: 190 MARCKSVVHRVKKMEKDVDIACTNAKDPKRK--TLSKELEEEENMLKQCIEKLKSVEASR 247
VH ++ V + + +D K+K LS+ LE + + ++ VE +
Sbjct: 198 GGHILHEVHEA--IDTMVQVR-HSMEDQKKKMMALSETLELAKRVFLHQKREVLVVEEAY 254
Query: 248 VALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLNDEDYVSKPSTTATLSAD 307
V +K A+H + ++E + R N+ +S+ D
Sbjct: 255 VNFRDGIK-AVHTELLDMEAKKVYPGLLSPRNEDDRQTYGRSNNRS-LSQQWGDNRNQID 312
Query: 308 MNAKGAQTPKRTAAAIAAEVADKLTASTSSQM-IMHSVLSTFAAQEAKNAGLVKASTASN 366
M + P+ + + + + S Q IM L A + + + + +T +
Sbjct: 313 MEMDEDERPQAPMMKPSLQALVGIASQPSLQSRIMQLGLKKIANGDEE---MFQPTTTTT 369
Query: 367 SFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPP 405
+ P+P+ P P K ++ +P ++++ P
Sbjct: 370 ADTPLPSTFQ----PPPSKPAVINASKFSMPPPAITSAP 404
>SGD|S000002697 [details] [associations]
symbol:RTT103 "Protein involved in transcription termination
by RNA polymerase II" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA] [GO:0010526 "negative
regulation of transposition, RNA-mediated" evidence=IMP]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0031124 "mRNA
3'-end processing" evidence=IGI;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0035861 "site of double-strand
break" evidence=IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] SGD:S000002697 GO:GO:0006355 GO:GO:0003677
EMBL:BK006938 GO:GO:0006351 GO:GO:0000790 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0000993 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559
GO:GO:0031124 GO:GO:0010526 GO:GO:0035861 EMBL:U51031 PDB:2L0I
PDBsum:2L0I EMBL:AY557793 PIR:S70119 RefSeq:NP_010575.1 PDB:2KM4
PDBsum:2KM4 ProteinModelPortal:Q05543 SMR:Q05543 DIP:DIP-2583N
IntAct:Q05543 MINT:MINT-425860 STRING:Q05543 PaxDb:Q05543
EnsemblFungi:YDR289C GeneID:851884 KEGG:sce:YDR289C CYGD:YDR289c
HOGENOM:HOG000141975 OMA:ASESCKG OrthoDB:EOG4X0R2T
EvolutionaryTrace:Q05543 NextBio:969856 Genevestigator:Q05543
GermOnline:YDR289C Uniprot:Q05543
Length = 409
Score = 130 (50.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 65/257 (25%), Positives = 111/257 (43%)
Query: 5 FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQF--HSSQLVQKVPLLY 62
FS + KL+ L +Q+ I + S W + A V W + S +K+ LY
Sbjct: 3 FSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLY 62
Query: 63 LANDILQNSK-RKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR 121
L N ++Q +K +K +F F KV L + + K +SR+VNI ER +F +
Sbjct: 63 LMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQ 122
Query: 122 ARGVKDV--MLGGEVPP--PLEFSGKKRSRPV---KIVKRDSRSIRTKLTVGGAAEKI-- 172
V D+ L E P L K + K+VK K+ +++++
Sbjct: 123 V--VNDIERSLKTESSPVEALVLPQKLKDFAKDYEKLVKMHHNVCAMKMRFDKSSDELDP 180
Query: 173 VSAYHLVLCEQLSEEEEMARCKSVVHR-VKKMEKDVDIACTNAKDPKRKTLSKELEEEEN 231
S+ + + +S+ MA K +++ + K E + + D KR L+EE+N
Sbjct: 181 SSSVYEENFKTISKIGNMA--KDIINESILKRESGIHKLQSTLDDEKR-----HLDEEQN 233
Query: 232 MLKQCIEKLKSVEASRV 248
ML + L + + SR+
Sbjct: 234 MLSEIEFVLSAKDPSRL 250
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.126 0.357 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 525 475 0.00078 119 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 618 (66 KB)
Total size of DFA: 266 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.89u 0.15s 58.04t Elapsed: 00:00:03
Total cpu time: 57.90u 0.15s 58.05t Elapsed: 00:00:03
Start: Sat May 11 05:41:44 2013 End: Sat May 11 05:41:47 2013