BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009811
         (525 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CSU0|RPR1B_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus
           musculus GN=Rprd1b PE=1 SV=2
          Length = 326

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  A  +V+ W ++   ++  +K+  LY
Sbjct: 2   SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
           LAND++QNSKRKG EF  EF  VL  A   V    D+  K  + RL+NIW ER V+G   
Sbjct: 62  LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121

Query: 122 ARGVKDVMLGGEVPPP 137
            + +K  M   + PPP
Sbjct: 122 IQQLKLSMEDSKSPPP 137


>sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo
           sapiens GN=RPRD1B PE=1 SV=1
          Length = 326

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  A  +V+ W ++   ++  +K+  LY
Sbjct: 2   SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
           LAND++QNSKRKG EF  EF  VL  A   V    D+  K  + RL+NIW ER V+G   
Sbjct: 62  LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121

Query: 122 ARGVKDVMLGGEVPPP 137
            + +K  M   + PPP
Sbjct: 122 IQQLKLSMEDSKSPPP 137


>sp|Q5ZM30|RPR1A_CHICK Regulation of nuclear pre-mRNA domain-containing protein 1A
           OS=Gallus gallus GN=RPRD1A PE=2 SV=1
          Length = 268

 Score =  105 bits (262), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 76/116 (65%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L  KLS+L+ +QQ ++TLS W I HR  + L+V+ W+++   ++  +K+  LY
Sbjct: 2   SAFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
           LAND++QNSKRKG EF  +F  V+  A K V    D+S K    R+++IW+ER V+
Sbjct: 62  LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSESDESCKKHPGRVLSIWEERSVY 117


>sp|Q5R8Y3|RPR1A_PONAB Regulation of nuclear pre-mRNA domain-containing protein 1A
           OS=Pongo abelii GN=RPRD1A PE=2 SV=1
          Length = 312

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 76/116 (65%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  +  +V  W+++   ++  +K+  LY
Sbjct: 2   SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
           LAND++QNSKRKG EF  +F  V+  A K V    D+S K  + R+++IW+ER V+
Sbjct: 62  LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVY 117


>sp|Q96P16|RPR1A_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo
           sapiens GN=RPRD1A PE=1 SV=1
          Length = 312

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 76/116 (65%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  +  +V  W+++   ++  +K+  LY
Sbjct: 2   SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
           LAND++QNSKRKG EF  +F  V+  A K V    D+S K  + R+++IW+ER V+
Sbjct: 62  LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVY 117


>sp|Q0P5J9|RPR1A_BOVIN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos
           taurus GN=RPRD1A PE=2 SV=2
          Length = 312

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 76/116 (65%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  +  +V  W+++   ++  +K+  LY
Sbjct: 2   SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
           LAND++QNSKRKG EF  +F  V+  A K V    D+S K  + R+++IW+ER V+
Sbjct: 62  LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVY 117


>sp|Q8VDS4|RPR1A_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus
           musculus GN=Rprd1a PE=2 SV=1
          Length = 312

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 76/116 (65%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  +  +V  W+++   ++  +K+  LY
Sbjct: 2   SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
           LAND++QNSKRKG EF  +F  V+  A K V    D+S K  + R+++IW+ER V+
Sbjct: 62  LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVY 117


>sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo
           sapiens GN=RPRD2 PE=1 SV=1
          Length = 1461

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 118/289 (40%), Gaps = 16/289 (5%)

Query: 10  LAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQ 69
           L  K   +  T + I+ LS WCI ++     +V  W K    S    ++ L YLAND++Q
Sbjct: 27  LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 86

Query: 70  NSKRKGNEFVTE-FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDV 128
           N KRK      E F  VLP A   V    D S    V R+  IW++R V+          
Sbjct: 87  NCKRKNAIIFRESFADVLPEAAALV---KDPSVSKSVERIFKIWEDRNVYPEEMIVALRE 143

Query: 129 MLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYH-------LVLC 181
            L        +       +P K  K+   S   K  +     KIV+ +        L+L 
Sbjct: 144 ALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAAL---KSKIVAEFRSQALIEELLLY 200

Query: 182 EQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK 241
           ++  ++ E+   +    RV     +  + C   K   +K  SKE EE  + L++ +  L 
Sbjct: 201 KRSEDQIELKEKQLSTMRVDVCSTET-LKCLKDKTGGKK-FSKEFEEASSKLEEFVNGLD 258

Query: 242 SVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290
               +  +L   L+ A    E++ + V+      +  A    N++K+L+
Sbjct: 259 KQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD 307


>sp|A8WLG6|CIDS1_CAEBR CID domain-containing protein 1 OS=Caenorhabditis briggsae
           GN=cids-1 PE=4 SV=1
          Length = 311

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKV-PLL 61
           S F+EQ L +KL+ L+     I+T S W + + +  E+++  W K         KV  LL
Sbjct: 2   SDFTEQTLRQKLANLSNHSNSIQTTSSWLLKNHNNREIIIRVWLKTVRKENKGAKVVNLL 61

Query: 62  YLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFG-S 120
           Y+AND+ QN+++   +F  +F+  + +A +   E      +N + +L+++W ER+++  S
Sbjct: 62  YVANDVAQNARKACPQFKDDFFPAIESAFRHCCELKAKEVENAIGKLIHVWKERQIYSQS 121

Query: 121 RARGVKD----VMLGGEVPPPLEFSGKKRSRPVKIV 152
           + + +++    + L G  P P   +  K S+P + +
Sbjct: 122 QCKRLQEAHQQMKLSGSFPSPAGRNNGKNSQPNQFI 157


>sp|P34281|CIDS1_CAEEL CID domain-containing protein 1 OS=Caenorhabditis elegans GN=cids-1
           PE=4 SV=2
          Length = 315

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 79/143 (55%), Gaps = 13/143 (9%)

Query: 5   FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATW----DKQFHSSQLVQKVPL 60
           F+EQ L +KL+ L+     I+T S W + + S  EL++  W     K+ H S++V    L
Sbjct: 4   FTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVN---L 60

Query: 61  LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVE-NGDDSGKNVVSRLVNIWDERRVFG 119
           LY+AND+ QN+++   +F  EF+  + ++ +  +E       ++ + +L+N+W +R++F 
Sbjct: 61  LYVANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEVEHAIGKLINVWKDRQIFT 120

Query: 120 -SRARGVKDVM----LGGEVPPP 137
            S+ + + +V     L G  P P
Sbjct: 121 PSQCKRLHEVHQQVKLSGSFPTP 143


>sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Mus
           musculus GN=Rprd2 PE=1 SV=1
          Length = 1469

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 34/307 (11%)

Query: 10  LAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQ 69
           L  K   +  T + I+ LS WCI ++     +V  W K    S    ++ L YLAND++Q
Sbjct: 27  LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQ 86

Query: 70  NSKRKGNEFVTE-FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFG--------- 119
           N KRK      E F  VLP A   V    D S    + R+  IW++R V+          
Sbjct: 87  NCKRKNAIIFRESFADVLPEAAALV---KDPSVSKSIERIFKIWEDRNVYPEDMIVALRE 143

Query: 120 ---SRARGVKDVMLGGEVPPPLEFSGKKR------SRPVKIVKRDSRSIRTKLTVGGAAE 170
               RA      +   +  P   F  +K+       +P K  K+   S   K  +     
Sbjct: 144 ALMDRAASHNARLQKLQCFPGTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAAL---KS 200

Query: 171 KIVSAYH-------LVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLS 223
           KIV+ +        L++ ++  ++ E+   +    RV     +  + C   K   +K  S
Sbjct: 201 KIVAEFRSQALIEELLMYKRSEDQIELKEKQLSTMRVDVCSTET-LKCLKDKTGGKK-FS 258

Query: 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEAC 283
           KE EE  + L++ +  L     +  +L   L+ A    E++ + V+      +  A    
Sbjct: 259 KEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVN 318

Query: 284 NMRKRLN 290
           N++K+L+
Sbjct: 319 NLKKKLD 325


>sp|O74814|YJ03_SCHPO UPF0400 protein C337.03 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=SPBC337.03 PE=1 SV=1
          Length = 387

 Score = 59.3 bits (142), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 33/295 (11%)

Query: 10  LAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQ 69
           ++ KL+ LN TQ+ I  ++HW +FH+  A+ +V  W +  + S   +K+ LLYL N+++Q
Sbjct: 8   VSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLNEVVQ 67

Query: 70  NSK-RKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDV 128
            S+ +K +E++      +  ++ D   +   S K  +  + ++W +R +F       K++
Sbjct: 68  QSRVKKISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDVWCQRGIFS------KEI 121

Query: 129 MLG-GEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLSEE 187
           +L   E     E SG     PV                 G  E   + Y  ++ +     
Sbjct: 122 LLSLQERFNNAENSGHSNYYPV-----------------GPPE--WAPYTRLMTQTSLYA 162

Query: 188 EEMARCKSVVHRVKK--MEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEA 245
           +     K+VV  + K  +EK  D   +   D  +K L+K  E  +   + CIE   ++  
Sbjct: 163 KSAHSTKTVVDALYKSYLEKQSDY--SELLDNYKKQLNKASESCKGNYQACIESRSTLIT 220

Query: 246 SRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDEDYVSKPST 300
           S  +L+ + K+ L E+E  L++V +   ++  + +E+      L D  +  K ST
Sbjct: 221 SLESLIEEQKKLLSEEEESLKSVES--IISNLENKESTTATSTLTDAGFGDKSST 273


>sp|Q05543|RT103_YEAST Regulator of Ty1 transposition protein 103 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RTT103 PE=1
           SV=1
          Length = 409

 Score = 43.5 bits (101), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 5   FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFH---SSQLVQKVPLL 61
           FS +    KL+ L  +Q+ I + S W +     A  V   W K++    S    +K+  L
Sbjct: 3   FSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMW-KEYMLRPSVNTRRKLLGL 61

Query: 62  YLANDILQNSK-RKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVF 118
           YL N ++Q +K +K  +F   F KV    L  + +      K  +SR+VNI  ER +F
Sbjct: 62  YLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIF 119


>sp|F4JJP1|Y4759_ARATH WEB family protein At4g27595, chloroplastic OS=Arabidopsis thaliana
           GN=At4g27595 PE=2 SV=1
          Length = 1221

 Score = 35.0 bits (79), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 18/98 (18%)

Query: 176 YHLVLCEQ------LSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEE 229
            HL+LC +       S +EE+++ K+++H      K+V+      +D K +T  KELEEE
Sbjct: 551 LHLMLCVKKLEDGNFSVQEELSKVKNLLHL-----KEVEACAAKEEDAKMQTNRKELEEE 605

Query: 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267
              L++ +E  K       A   +LKE+L E+E EL+N
Sbjct: 606 IKDLQEIVEVAK-------ADSMKLKESLVEKEDELKN 636


>sp|Q7Z6P3|RAB44_HUMAN Ras-related protein Rab-44 OS=Homo sapiens GN=RAB44 PE=3 SV=3
          Length = 723

 Score = 33.9 bits (76), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 12/188 (6%)

Query: 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEAC 283
           + L E +  L+  +  L+S      +   QL+EA  +    LE VR Q+QV + + + A 
Sbjct: 13  QRLAEGQRELEAQLSHLRSTHQEAASENQQLQEAKRDLAGRLEEVRGQLQVTRGRLDAA- 71

Query: 284 NMRKRLNDEDYVSKPSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHS 343
             R R++ +         A         G +TP   AA+        L            
Sbjct: 72  --RGRVSWQVEEKLRQVAAIPGLGFPGAGEKTPDPQAASPEEAPLPGLFGDNDD---WDQ 126

Query: 344 VLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLST 403
           +LS F +       L        S PP P  +     P+  +Q ++S+P  FL  Q  S+
Sbjct: 127 LLSNFGSPPHGALQLCW------SPPPTPRATSGPQTPRVVRQISISEPQAFLFGQEPSS 180

Query: 404 PPNQSYQT 411
            P+ + +T
Sbjct: 181 DPDGAPRT 188


>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1
          Length = 2474

 Score = 33.9 bits (76), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 200  VKKMEKDVDIACTNAKDPKRKTLSKELEEEENM-LKQCIEKLKSVEASRVALVSQLKEAL 258
            +++ ++ + + CT  K+  R+TL+  LE EE + L +C   LK  E     L++    +L
Sbjct: 1348 LRRTQETLQVECTQLKEDARRTLANHLETEEELNLARCC--LKEQENKIDTLIT----SL 1401

Query: 259  HEQESELENVRTQMQVAQAQAE----EACNMRKRL 289
             ++E+EL +VR Q+ +  A+ E    E C  ++ L
Sbjct: 1402 SQRETELSSVRGQLALTTAELERKVQELCEKQEEL 1436


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.126    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,100,388
Number of Sequences: 539616
Number of extensions: 8377130
Number of successful extensions: 49553
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 2139
Number of HSP's that attempted gapping in prelim test: 39115
Number of HSP's gapped (non-prelim): 8678
length of query: 525
length of database: 191,569,459
effective HSP length: 122
effective length of query: 403
effective length of database: 125,736,307
effective search space: 50671731721
effective search space used: 50671731721
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)