Query 009811
Match_columns 525
No_of_seqs 238 out of 469
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 17:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2669 Regulator of nuclear m 100.0 1.3E-47 2.8E-52 390.2 23.9 289 3-293 2-295 (325)
2 smart00582 RPR domain present 99.9 7.2E-27 1.6E-31 207.7 11.3 119 9-127 1-121 (121)
3 cd03562 CID CID (CTD-Interacti 99.9 2.8E-24 6E-29 189.8 10.8 114 4-120 1-114 (114)
4 PF04818 CTD_bind: RNA polymer 99.7 1.1E-18 2.4E-23 139.9 4.2 63 57-119 1-64 (64)
5 KOG0151 Predicted splicing reg 99.6 4.4E-16 9.6E-21 169.9 10.7 128 6-133 432-573 (877)
6 PF12243 CTK3: CTD kinase subu 99.5 9.4E-13 2E-17 121.5 13.1 123 7-129 7-135 (139)
7 KOG4368 Predicted RNA binding 99.4 3.9E-12 8.5E-17 136.9 16.4 127 5-131 101-236 (757)
8 KOG0132 RNA polymerase II C-te 98.7 4.8E-08 1E-12 109.0 8.5 125 8-133 5-139 (894)
9 KOG2071 mRNA cleavage and poly 97.7 0.00012 2.5E-09 81.0 8.5 102 9-113 8-110 (579)
10 KOG1924 RhoA GTPase effector D 97.3 0.0062 1.3E-07 69.4 15.8 12 281-292 475-486 (1102)
11 KOG1924 RhoA GTPase effector D 97.0 0.0035 7.6E-08 71.3 10.0 37 76-112 174-219 (1102)
12 cd09237 V_ScBro1_like Protein- 94.7 0.24 5.2E-06 52.5 10.7 65 216-280 290-354 (356)
13 KOG1923 Rac1 GTPase effector F 94.5 0.95 2.1E-05 52.2 15.3 21 170-190 135-155 (830)
14 cd00197 VHS_ENTH_ANTH VHS, ENT 94.4 0.18 3.9E-06 44.5 7.8 92 20-114 17-115 (115)
15 KOG2236 Uncharacterized conser 92.1 0.56 1.2E-05 51.3 8.3 20 252-271 313-332 (483)
16 cd09234 V_HD-PTP_like Protein- 92.0 1.7 3.6E-05 45.9 11.7 54 227-280 282-335 (337)
17 cd09235 V_Alix Middle V-domain 91.7 2.4 5.1E-05 44.9 12.5 50 231-280 288-337 (339)
18 cd09236 V_AnPalA_UmRIM20_like 91.5 1.1 2.3E-05 47.7 9.6 56 225-280 296-351 (353)
19 cd09238 V_Alix_like_1 Protein- 90.6 1.3 2.8E-05 46.9 9.2 51 230-280 287-337 (339)
20 cd08915 V_Alix_like Protein-in 90.4 1.8 4E-05 45.4 10.1 54 227-280 287-340 (342)
21 cd03561 VHS VHS domain family; 90.3 0.77 1.7E-05 41.9 6.4 92 22-115 19-113 (133)
22 PF13949 ALIX_LYPXL_bnd: ALIX 89.8 6.6 0.00014 39.9 13.3 52 230-281 240-291 (296)
23 PF00790 VHS: VHS domain; Int 89.4 3.5 7.7E-05 37.9 10.0 92 22-116 24-120 (140)
24 KOG1087 Cytosolic sorting prot 88.5 46 0.001 37.2 20.1 77 35-114 33-112 (470)
25 KOG2893 Zn finger protein [Gen 88.1 3.4 7.3E-05 42.1 9.4 41 376-419 98-138 (341)
26 smart00288 VHS Domain present 87.8 3.4 7.4E-05 37.9 8.7 90 22-114 19-111 (133)
27 KOG0132 RNA polymerase II C-te 85.7 7.5 0.00016 45.3 11.6 25 103-127 126-153 (894)
28 cd03569 VHS_Hrs_Vps27p VHS dom 85.2 5.6 0.00012 37.1 8.8 82 26-114 27-114 (142)
29 PRK10884 SH3 domain-containing 85.1 19 0.00041 35.9 12.9 82 190-283 85-166 (206)
30 KOG0250 DNA repair protein RAD 83.8 91 0.002 38.1 19.6 73 22-94 210-291 (1074)
31 COG4026 Uncharacterized protei 81.7 16 0.00035 37.0 10.7 47 225-271 129-175 (290)
32 KOG4672 Uncharacterized conser 81.4 15 0.00032 40.1 11.0 47 221-267 74-121 (487)
33 cd03567 VHS_GGA VHS domain fam 80.8 6.1 0.00013 36.8 7.2 94 34-129 32-131 (139)
34 KOG4849 mRNA cleavage factor I 80.8 18 0.0004 38.8 11.3 10 428-437 264-273 (498)
35 PF04156 IncA: IncA protein; 79.1 61 0.0013 30.9 15.0 35 255-289 157-191 (191)
36 KOG0307 Vesicle coat complex C 78.6 1.7E+02 0.0037 35.8 23.6 19 272-290 634-652 (1049)
37 KOG0163 Myosin class VI heavy 78.1 1.1E+02 0.0023 36.5 16.8 73 51-128 770-842 (1259)
38 KOG0994 Extracellular matrix g 78.0 1.9E+02 0.0041 36.0 20.8 24 183-206 1527-1550(1758)
39 cd03568 VHS_STAM VHS domain fa 76.7 16 0.00034 34.2 8.6 101 23-130 20-129 (144)
40 PF06008 Laminin_I: Laminin Do 76.5 19 0.00042 36.5 10.0 60 224-283 153-212 (264)
41 COG1842 PspA Phage shock prote 76.2 92 0.002 31.5 15.4 83 194-280 62-144 (225)
42 PF04012 PspA_IM30: PspA/IM30 75.7 84 0.0018 30.8 15.4 88 199-291 66-153 (221)
43 KOG4849 mRNA cleavage factor I 74.9 59 0.0013 35.1 13.0 6 233-238 137-142 (498)
44 PF14931 IFT20: Intraflagellar 73.2 76 0.0016 29.1 13.1 79 191-274 27-105 (120)
45 PF07889 DUF1664: Protein of u 72.0 45 0.00097 30.9 10.1 62 219-280 52-113 (126)
46 TIGR02977 phageshock_pspA phag 71.4 1.1E+02 0.0024 30.3 15.5 80 200-283 68-147 (219)
47 PF10267 Tmemb_cc2: Predicted 71.0 42 0.00092 36.7 11.3 68 219-286 246-318 (395)
48 PF10186 Atg14: UV radiation r 70.7 79 0.0017 31.8 12.8 39 225-263 67-105 (302)
49 PF10146 zf-C4H2: Zinc finger- 69.8 59 0.0013 33.0 11.3 55 234-288 49-103 (230)
50 smart00787 Spc7 Spc7 kinetocho 69.7 1.6E+02 0.0034 31.3 15.0 55 235-289 211-265 (312)
51 PF01417 ENTH: ENTH domain; I 69.5 23 0.0005 31.7 7.7 100 10-113 4-120 (125)
52 PF04108 APG17: Autophagy prot 69.2 1.8E+02 0.0039 31.8 21.5 118 167-287 192-325 (412)
53 KOG1830 Wiskott Aldrich syndro 68.9 32 0.0007 37.8 9.7 17 461-477 335-351 (518)
54 KOG0119 Splicing factor 1/bran 68.3 27 0.00059 39.0 9.1 16 59-74 52-67 (554)
55 PF10168 Nup88: Nuclear pore c 67.2 40 0.00086 39.6 10.8 15 276-290 649-663 (717)
56 PF00435 Spectrin: Spectrin re 66.1 70 0.0015 25.9 11.0 87 199-289 16-103 (105)
57 KOG0933 Structural maintenance 65.7 85 0.0018 38.2 12.9 64 219-282 743-806 (1174)
58 KOG3850 Predicted membrane pro 65.5 70 0.0015 34.9 11.3 45 245-289 288-333 (455)
59 PF06008 Laminin_I: Laminin Do 64.7 1.5E+02 0.0033 30.0 13.4 102 186-291 151-262 (264)
60 cd07593 BAR_MUG137_fungi The B 64.5 1.2E+02 0.0025 30.5 12.1 66 225-290 122-188 (215)
61 PF06103 DUF948: Bacterial pro 64.2 88 0.0019 26.4 10.7 58 225-282 27-84 (90)
62 cd07617 BAR_Endophilin_B2 The 63.8 1.7E+02 0.0037 29.6 13.5 39 252-290 161-200 (220)
63 PRK10698 phage shock protein P 63.6 1.7E+02 0.0036 29.4 15.5 65 219-283 83-147 (222)
64 KOG1962 B-cell receptor-associ 63.3 79 0.0017 31.9 10.6 70 194-265 130-199 (216)
65 KOG0977 Nuclear envelope prote 62.8 1.9E+02 0.0041 33.1 14.6 30 325-354 352-381 (546)
66 PF04111 APG6: Autophagy prote 62.4 71 0.0015 33.7 10.7 26 251-276 101-126 (314)
67 PF10168 Nup88: Nuclear pore c 61.2 2.1E+02 0.0046 33.7 15.2 51 221-271 569-619 (717)
68 PF05276 SH3BP5: SH3 domain-bi 60.1 1.2E+02 0.0025 31.1 11.4 91 188-280 11-101 (239)
69 KOG1830 Wiskott Aldrich syndro 59.4 1.7E+02 0.0036 32.6 12.8 12 61-72 32-43 (518)
70 KOG2893 Zn finger protein [Gen 59.1 73 0.0016 32.8 9.5 8 407-414 138-145 (341)
71 PF08317 Spc7: Spc7 kinetochor 59.1 1.5E+02 0.0032 31.2 12.5 42 246-287 227-268 (325)
72 KOG2236 Uncharacterized conser 59.0 31 0.00068 38.2 7.5 9 437-445 438-446 (483)
73 TIGR03185 DNA_S_dndD DNA sulfu 58.2 1.7E+02 0.0037 33.6 13.8 29 219-247 423-451 (650)
74 cd07594 BAR_Endophilin_B The B 58.0 1.5E+02 0.0034 29.9 11.8 42 249-290 167-209 (229)
75 KOG1466 Translation initiation 57.8 1.2E+02 0.0026 31.8 10.9 63 230-292 53-123 (313)
76 COG5185 HEC1 Protein involved 57.2 2.2E+02 0.0048 32.1 13.4 55 238-292 368-422 (622)
77 KOG0933 Structural maintenance 57.1 2.2E+02 0.0048 34.9 14.2 34 218-251 788-821 (1174)
78 PRK11637 AmiB activator; Provi 56.3 2.7E+02 0.0057 30.3 14.2 39 236-274 206-244 (428)
79 PRK02224 chromosome segregatio 55.4 2E+02 0.0042 34.1 14.0 37 219-255 648-684 (880)
80 KOG0119 Splicing factor 1/bran 55.3 95 0.0021 35.0 10.4 13 190-202 214-226 (554)
81 PF10267 Tmemb_cc2: Predicted 55.0 2.7E+02 0.0058 30.6 13.7 55 238-292 251-310 (395)
82 PF12128 DUF3584: Protein of u 54.7 2.7E+02 0.0058 34.7 15.4 28 45-73 126-155 (1201)
83 TIGR03495 phage_LysB phage lys 54.2 1.7E+02 0.0038 27.4 10.6 71 219-293 21-91 (135)
84 PRK00846 hypothetical protein; 54.1 76 0.0016 27.0 7.5 37 235-271 13-49 (77)
85 PF05983 Med7: MED7 protein; 54.0 2.1E+02 0.0045 27.4 12.0 57 222-279 105-161 (162)
86 cd07652 F-BAR_Rgd1 The F-BAR ( 53.7 2.5E+02 0.0054 28.2 12.5 73 219-291 106-197 (234)
87 KOG2199 Signal transducing ada 53.4 77 0.0017 34.8 9.1 95 18-121 20-123 (462)
88 KOG0963 Transcription factor/C 53.3 4.2E+02 0.0091 30.8 15.4 94 168-261 122-222 (629)
89 PF04859 DUF641: Plant protein 53.1 1.9E+02 0.0041 27.0 10.6 39 224-262 83-121 (131)
90 PLN03223 Polycystin cation cha 53.1 2.9E+02 0.0063 35.1 14.7 42 219-267 1573-1614(1634)
91 PF15186 TEX13: Testis-express 52.6 1.8E+02 0.0038 27.9 10.3 64 223-286 77-140 (152)
92 KOG0971 Microtubule-associated 52.6 2E+02 0.0043 34.9 12.8 55 200-256 433-490 (1243)
93 KOG0978 E3 ubiquitin ligase in 52.4 2.5E+02 0.0055 33.0 13.6 62 231-292 548-609 (698)
94 PRK11637 AmiB activator; Provi 52.1 2.3E+02 0.005 30.8 13.0 19 331-349 235-253 (428)
95 TIGR02338 gimC_beta prefoldin, 51.8 1.7E+02 0.0037 25.8 10.8 47 219-272 57-104 (110)
96 PF11932 DUF3450: Protein of u 51.3 1.6E+02 0.0034 29.7 10.8 21 336-356 146-166 (251)
97 PF05483 SCP-1: Synaptonemal c 51.2 2.7E+02 0.006 32.7 13.4 74 167-241 190-264 (786)
98 KOG0995 Centromere-associated 51.0 4.4E+02 0.0096 30.4 16.4 98 25-126 161-265 (581)
99 PF04111 APG6: Autophagy prote 50.8 1.8E+02 0.004 30.6 11.5 23 269-291 112-134 (314)
100 KOG1923 Rac1 GTPase effector F 50.6 49 0.0011 38.9 7.6 12 279-290 229-240 (830)
101 PF09730 BicD: Microtubule-ass 50.1 2.2E+02 0.0048 33.6 12.9 53 219-271 81-133 (717)
102 PF04102 SlyX: SlyX; InterPro 49.9 75 0.0016 26.0 6.7 36 237-272 6-41 (69)
103 PF07763 FEZ: FEZ-like protein 49.8 1.5E+02 0.0033 30.4 10.2 62 220-291 174-237 (244)
104 PF07851 TMPIT: TMPIT-like pro 49.6 1.1E+02 0.0025 32.6 9.7 39 219-257 20-58 (330)
105 KOG2932 E3 ubiquitin ligase in 48.7 1.2E+02 0.0026 32.4 9.4 21 425-445 285-308 (389)
106 PLN02372 violaxanthin de-epoxi 48.4 3.2E+02 0.0069 30.3 12.8 23 220-242 375-397 (455)
107 PRK00409 recombination and DNA 48.4 4E+02 0.0087 31.7 14.9 40 219-258 518-557 (782)
108 cd07626 BAR_SNX9_like The Bin/ 48.3 2.9E+02 0.0062 27.4 12.7 96 172-272 99-196 (199)
109 KOG2751 Beclin-like protein [S 48.3 2.4E+02 0.0053 31.3 12.0 56 219-274 178-233 (447)
110 PRK10884 SH3 domain-containing 48.3 2.2E+02 0.0048 28.4 11.0 17 225-241 122-138 (206)
111 PF10498 IFT57: Intra-flagella 48.2 2E+02 0.0044 31.0 11.5 68 223-293 254-321 (359)
112 TIGR01628 PABP-1234 polyadenyl 48.1 76 0.0016 35.5 8.7 15 3-17 10-24 (562)
113 KOG1853 LIS1-interacting prote 47.2 3.6E+02 0.0077 28.2 13.2 30 260-289 151-180 (333)
114 PF10212 TTKRSYEDQ: Predicted 47.2 1.8E+02 0.0039 33.0 11.1 55 236-290 446-504 (518)
115 KOG0307 Vesicle coat complex C 46.9 4.4E+02 0.0096 32.5 14.8 9 281-289 585-593 (1049)
116 PF10234 Cluap1: Clusterin-ass 46.7 2.2E+02 0.0048 29.7 11.0 71 222-292 184-258 (267)
117 KOG3478 Prefoldin subunit 6, K 46.7 2.3E+02 0.0051 25.9 10.7 45 219-263 59-104 (120)
118 COG1730 GIM5 Predicted prefold 46.4 1.8E+02 0.004 27.5 9.6 46 224-276 90-135 (145)
119 KOG0964 Structural maintenance 46.2 2.4E+02 0.0052 34.5 12.3 69 221-289 297-365 (1200)
120 KOG1086 Cytosolic sorting prot 45.8 4.8E+02 0.01 29.3 18.8 102 9-114 8-123 (594)
121 cd07651 F-BAR_PombeCdc15_like 45.7 2.9E+02 0.0062 27.5 11.5 89 199-289 122-213 (236)
122 PRK15422 septal ring assembly 45.7 2E+02 0.0043 24.8 9.5 31 255-291 48-78 (79)
123 PF03670 UPF0184: Uncharacteri 45.6 1.1E+02 0.0025 26.4 7.3 39 231-272 36-74 (83)
124 PF03114 BAR: BAR domain; Int 44.9 2.4E+02 0.0052 26.5 10.5 12 189-200 93-104 (229)
125 cd03565 VHS_Tom1 VHS domain fa 44.8 1E+02 0.0022 28.6 7.7 92 22-114 20-115 (141)
126 PRK00295 hypothetical protein; 44.5 1.5E+02 0.0033 24.3 7.7 36 237-272 7-42 (68)
127 PF07426 Dynactin_p22: Dynacti 44.1 3.1E+02 0.0067 26.6 13.2 21 192-212 55-75 (174)
128 KOG1984 Vesicle coat complex C 44.1 1.1E+02 0.0023 36.9 9.0 10 513-522 120-129 (1007)
129 PF10498 IFT57: Intra-flagella 43.7 2.2E+02 0.0048 30.7 11.0 49 25-73 46-115 (359)
130 PF06160 EzrA: Septation ring 43.7 3.5E+02 0.0076 30.8 13.1 78 219-296 346-437 (560)
131 smart00150 SPEC Spectrin repea 43.5 1.7E+02 0.0037 23.5 10.2 55 219-273 33-87 (101)
132 PF15188 CCDC-167: Coiled-coil 43.2 1E+02 0.0023 26.7 6.8 24 222-245 3-26 (85)
133 KOG0993 Rab5 GTPase effector R 43.2 5.1E+02 0.011 28.9 16.8 48 222-269 135-182 (542)
134 KOG4637 Adaptor for phosphoino 43.1 3.9E+02 0.0086 29.3 12.4 21 189-209 168-188 (464)
135 KOG0250 DNA repair protein RAD 43.1 4.7E+02 0.01 32.4 14.2 13 337-349 514-526 (1074)
136 TIGR00634 recN DNA repair prot 43.1 4.8E+02 0.01 29.5 14.1 18 272-289 374-391 (563)
137 KOG4672 Uncharacterized conser 43.0 1.5E+02 0.0032 32.8 9.3 16 226-241 72-87 (487)
138 KOG0570 Transcriptional coacti 43.0 3.6E+02 0.0079 27.1 11.9 101 182-292 71-177 (223)
139 KOG0977 Nuclear envelope prote 42.9 2.2E+02 0.0048 32.6 11.1 67 223-292 150-216 (546)
140 TIGR03752 conj_TIGR03752 integ 42.8 2E+02 0.0044 32.3 10.6 40 253-292 102-142 (472)
141 cd09234 V_HD-PTP_like Protein- 42.8 1.9E+02 0.0041 30.6 10.2 71 221-291 262-332 (337)
142 KOG0996 Structural maintenance 42.4 8E+02 0.017 30.9 19.1 67 6-72 779-848 (1293)
143 COG2900 SlyX Uncharacterized p 42.1 2E+02 0.0044 24.3 8.0 47 237-286 10-56 (72)
144 PF05130 FlgN: FlgN protein; 41.8 2.4E+02 0.0052 24.6 11.0 15 223-237 50-64 (143)
145 PF01920 Prefoldin_2: Prefoldi 41.8 2.2E+02 0.0047 24.2 8.8 23 219-241 60-82 (106)
146 PF10146 zf-C4H2: Zinc finger- 41.5 3.5E+02 0.0075 27.5 11.3 44 220-263 21-64 (230)
147 TIGR02231 conserved hypothetic 41.4 1.9E+02 0.0041 32.3 10.4 16 254-269 129-144 (525)
148 PRK00846 hypothetical protein; 41.4 2.2E+02 0.0049 24.2 9.0 45 223-267 15-59 (77)
149 TIGR03185 DNA_S_dndD DNA sulfu 41.2 4.7E+02 0.01 30.2 13.8 15 21-35 41-55 (650)
150 PRK02793 phi X174 lysis protei 41.2 1.5E+02 0.0033 24.6 7.3 35 237-271 10-44 (72)
151 KOG0161 Myosin class II heavy 40.8 3.2E+02 0.007 35.9 13.1 64 190-254 1423-1486(1930)
152 PF04740 LXG: LXG domain of WX 40.5 3.4E+02 0.0073 26.0 12.2 49 219-267 140-188 (204)
153 cd07655 F-BAR_PACSIN The F-BAR 40.3 4.1E+02 0.009 27.0 16.0 28 100-127 16-44 (258)
154 PRK04325 hypothetical protein; 40.2 1.6E+02 0.0035 24.6 7.3 36 237-272 11-46 (74)
155 KOG2483 Upstream transcription 40.2 1.1E+02 0.0025 31.1 7.7 67 227-293 68-139 (232)
156 PRK00736 hypothetical protein; 40.0 1.8E+02 0.0038 24.0 7.4 35 237-271 7-41 (68)
157 PF06103 DUF948: Bacterial pro 39.9 2.3E+02 0.005 23.9 10.7 61 230-290 25-85 (90)
158 PRK02224 chromosome segregatio 39.6 6.3E+02 0.014 29.9 14.9 6 172-177 469-474 (880)
159 PF07851 TMPIT: TMPIT-like pro 39.6 3.5E+02 0.0076 29.1 11.4 38 224-261 14-51 (330)
160 KOG0161 Myosin class II heavy 39.6 2.9E+02 0.0062 36.4 12.5 31 59-89 801-831 (1930)
161 KOG1984 Vesicle coat complex C 39.4 2.4E+02 0.0053 34.0 11.0 6 439-444 59-64 (1007)
162 PRK04325 hypothetical protein; 39.1 2.3E+02 0.005 23.7 8.5 32 224-255 12-43 (74)
163 KOG4264 Nucleo-cytoplasmic pro 38.9 1.5E+02 0.0032 33.8 8.7 21 96-116 188-208 (694)
164 PF04102 SlyX: SlyX; InterPro 38.8 1.9E+02 0.004 23.7 7.4 46 223-268 6-51 (69)
165 cd07639 BAR_ACAP1 The Bin/Amph 38.7 1.9E+02 0.0042 28.7 8.8 31 231-261 61-91 (200)
166 PF10481 CENP-F_N: Cenp-F N-te 38.7 1.7E+02 0.0036 30.8 8.5 24 269-292 94-117 (307)
167 PF09726 Macoilin: Transmembra 38.6 6.4E+02 0.014 29.8 14.4 93 193-292 561-655 (697)
168 PRK09343 prefoldin subunit bet 38.6 3E+02 0.0066 24.9 11.4 23 219-241 61-84 (121)
169 cd07616 BAR_Endophilin_B1 The 38.5 2.4E+02 0.0053 28.6 9.7 7 109-115 58-64 (229)
170 KOG0996 Structural maintenance 38.5 5.4E+02 0.012 32.2 13.8 17 74-90 703-719 (1293)
171 PF01540 Lipoprotein_7: Adhesi 38.5 3.8E+02 0.0082 28.2 11.0 93 184-284 86-178 (353)
172 KOG0979 Structural maintenance 38.3 5.1E+02 0.011 31.9 13.4 121 169-289 173-320 (1072)
173 PRK10869 recombination and rep 38.3 2.1E+02 0.0046 32.5 10.3 11 169-179 220-230 (553)
174 KOG0980 Actin-binding protein 38.2 5.8E+02 0.013 31.0 13.7 21 170-190 389-409 (980)
175 cd07634 BAR_GAP10-like The Bin 37.8 2.9E+02 0.0063 27.7 9.9 30 232-261 68-97 (207)
176 KOG2008 BTK-associated SH3-dom 37.7 4.4E+02 0.0096 28.3 11.5 21 189-209 18-38 (426)
177 PF10392 COG5: Golgi transport 37.5 3.2E+02 0.007 24.9 10.9 48 222-269 73-120 (132)
178 TIGR02753 sodN superoxide dism 37.4 1.9E+02 0.0041 27.5 8.1 64 8-71 42-113 (145)
179 cd07623 BAR_SNX1_2 The Bin/Amp 37.3 3.3E+02 0.0072 27.0 10.5 101 171-276 120-224 (224)
180 PRK04406 hypothetical protein; 37.2 1.9E+02 0.004 24.4 7.3 37 236-272 12-48 (75)
181 KOG4673 Transcription factor T 37.1 6.1E+02 0.013 30.1 13.3 14 276-289 583-596 (961)
182 PF01603 B56: Protein phosphat 37.1 70 0.0015 34.8 6.1 89 24-118 239-327 (409)
183 COG2882 FliJ Flagellar biosynt 37.0 3.8E+02 0.0082 25.6 10.6 15 231-245 67-81 (148)
184 COG4477 EzrA Negative regulato 36.9 6.4E+02 0.014 29.0 13.3 78 219-296 349-440 (570)
185 PF09728 Taxilin: Myosin-like 36.6 4.3E+02 0.0094 27.9 11.6 120 169-291 24-146 (309)
186 PF06005 DUF904: Protein of un 36.4 2.6E+02 0.0055 23.4 11.2 23 269-291 49-71 (72)
187 PF05546 She9_MDM33: She9 / Md 36.4 3.8E+02 0.0082 27.0 10.4 51 198-260 32-82 (207)
188 PRK02793 phi X174 lysis protei 36.0 2.5E+02 0.0055 23.3 8.0 29 226-254 13-41 (72)
189 KOG3091 Nuclear pore complex, 35.7 3.1E+02 0.0067 31.0 10.6 20 54-73 258-277 (508)
190 PRK04778 septation ring format 35.7 4.6E+02 0.0099 29.8 12.4 34 219-252 350-383 (569)
191 cd07602 BAR_RhoGAP_OPHN1-like 35.6 4.7E+02 0.01 26.2 12.2 32 230-261 66-97 (207)
192 KOG1118 Lysophosphatidic acid 35.5 5.9E+02 0.013 27.4 12.1 39 252-290 176-215 (366)
193 PRK02119 hypothetical protein; 35.5 2.1E+02 0.0046 23.9 7.3 36 237-272 11-46 (73)
194 PF13949 ALIX_LYPXL_bnd: ALIX 35.4 4.8E+02 0.01 26.4 11.5 49 244-292 240-288 (296)
195 COG0598 CorA Mg2+ and Co2+ tra 35.4 3.9E+02 0.0085 27.9 11.1 53 239-291 191-245 (322)
196 TIGR01069 mutS2 MutS2 family p 35.4 6.9E+02 0.015 29.8 14.2 12 25-36 247-258 (771)
197 PF13747 DUF4164: Domain of un 35.3 3E+02 0.0064 23.8 10.2 16 229-244 9-24 (89)
198 PF13166 AAA_13: AAA domain 35.2 3.4E+02 0.0074 31.2 11.5 47 243-289 425-471 (712)
199 PF07526 POX: Associated with 35.2 1.6E+02 0.0035 27.6 7.4 60 219-289 79-138 (140)
200 PRK00736 hypothetical protein; 35.2 2.5E+02 0.0055 23.0 8.1 31 225-255 9-39 (68)
201 PF05667 DUF812: Protein of un 35.1 6.2E+02 0.013 29.3 13.3 113 170-290 359-478 (594)
202 KOG2129 Uncharacterized conser 35.0 6.6E+02 0.014 28.1 12.6 59 235-293 165-228 (552)
203 PF07160 DUF1395: Protein of u 35.0 4.4E+02 0.0096 26.9 11.0 58 233-290 20-77 (243)
204 cd08915 V_Alix_like Protein-in 34.9 2.3E+02 0.0049 29.8 9.3 49 243-291 289-337 (342)
205 PF07888 CALCOCO1: Calcium bin 34.8 4.3E+02 0.0093 30.3 11.7 10 449-458 500-509 (546)
206 PF07544 Med9: RNA polymerase 34.7 90 0.002 26.5 5.1 44 189-241 36-79 (83)
207 PF12128 DUF3584: Protein of u 34.5 7E+02 0.015 31.2 14.6 47 245-291 837-883 (1201)
208 PF03392 OS-D: Insect pheromon 34.3 71 0.0015 28.0 4.5 40 76-115 34-73 (95)
209 PF00261 Tropomyosin: Tropomyo 34.1 4.9E+02 0.011 26.0 14.2 31 259-289 172-202 (237)
210 KOG4307 RNA binding protein RB 34.1 84 0.0018 36.8 6.1 8 184-191 49-56 (944)
211 TIGR03513 GldL_gliding gliding 33.9 5E+02 0.011 26.1 11.3 54 230-290 129-182 (202)
212 COG5185 HEC1 Protein involved 33.9 3.5E+02 0.0075 30.6 10.5 49 231-279 312-360 (622)
213 KOG4403 Cell surface glycoprot 33.8 3.6E+02 0.0079 30.1 10.5 39 254-292 337-376 (575)
214 PRK00295 hypothetical protein; 33.7 2.7E+02 0.0058 22.9 8.3 36 223-258 7-42 (68)
215 KOG0971 Microtubule-associated 33.7 9.9E+02 0.021 29.4 15.0 21 168-188 428-448 (1243)
216 PRK02119 hypothetical protein; 33.7 2.8E+02 0.0061 23.1 8.0 15 253-267 13-27 (73)
217 cd07636 BAR_GRAF The Bin/Amphi 33.6 5.1E+02 0.011 26.0 10.9 31 231-261 67-97 (207)
218 cd07614 BAR_Endophilin_A2 The 33.6 5.2E+02 0.011 26.2 13.4 23 253-275 158-180 (223)
219 KOG4552 Vitamin-D-receptor int 33.5 3.3E+02 0.0071 27.7 9.4 41 225-265 64-104 (272)
220 PF05816 TelA: Toxic anion res 33.4 3.4E+02 0.0074 28.7 10.4 32 225-256 120-151 (333)
221 KOG3671 Actin regulatory prote 33.4 2.6E+02 0.0056 31.7 9.5 7 63-69 68-74 (569)
222 KOG0994 Extracellular matrix g 33.2 1.1E+03 0.024 29.9 22.5 65 227-291 1657-1721(1758)
223 PRK11281 hypothetical protein; 33.2 3.4E+02 0.0073 33.8 11.4 35 254-291 147-181 (1113)
224 cd07603 BAR_ACAPs The Bin/Amph 33.2 3.2E+02 0.007 27.0 9.5 32 230-261 60-91 (200)
225 smart00574 POX domain associat 33.1 2.1E+02 0.0046 27.1 7.6 60 219-289 79-138 (140)
226 KOG0999 Microtubule-associated 32.9 4.4E+02 0.0096 30.4 11.2 45 219-263 154-198 (772)
227 TIGR03545 conserved hypothetic 32.4 1.5E+02 0.0033 33.8 7.9 32 258-289 218-249 (555)
228 COG0216 PrfA Protein chain rel 32.4 5.4E+02 0.012 27.9 11.3 42 191-233 7-49 (363)
229 PF09440 eIF3_N: eIF3 subunit 32.3 2.3E+02 0.005 26.3 7.8 28 103-130 13-41 (133)
230 smart00030 CLb CLUSTERIN Beta 32.3 4.1E+02 0.009 26.7 9.8 43 225-267 23-65 (206)
231 PF07083 DUF1351: Protein of u 32.1 4.9E+02 0.011 25.9 10.6 19 190-208 41-59 (215)
232 TIGR01010 BexC_CtrB_KpsE polys 32.1 5.7E+02 0.012 26.9 11.8 71 221-291 181-260 (362)
233 PRK00409 recombination and DNA 32.0 3.9E+02 0.0085 31.8 11.5 7 62-68 316-322 (782)
234 COG3524 KpsE Capsule polysacch 32.0 2.6E+02 0.0057 29.9 8.9 53 240-292 214-270 (372)
235 COG0497 RecN ATPase involved i 31.7 2.3E+02 0.005 32.5 9.1 64 219-289 264-330 (557)
236 PF09726 Macoilin: Transmembra 31.7 6.9E+02 0.015 29.5 13.2 60 229-288 454-520 (697)
237 TIGR02449 conserved hypothetic 31.7 3E+02 0.0065 22.8 9.1 47 221-270 14-60 (65)
238 PF14662 CCDC155: Coiled-coil 31.6 5.2E+02 0.011 25.8 10.4 65 223-287 10-74 (193)
239 cd07613 BAR_Endophilin_A1 The 31.5 5.7E+02 0.012 25.9 13.3 19 223-241 156-174 (223)
240 KOG3366 Mitochondrial F1F0-ATP 31.2 2.7E+02 0.0058 27.3 8.2 60 200-271 68-127 (172)
241 KOG3478 Prefoldin subunit 6, K 31.1 2.9E+02 0.0063 25.3 7.8 32 223-254 4-35 (120)
242 PRK04778 septation ring format 31.0 8.4E+02 0.018 27.8 15.0 20 110-129 155-174 (569)
243 PF08826 DMPK_coil: DMPK coile 31.0 2.9E+02 0.0064 22.5 9.0 41 225-265 5-45 (61)
244 PF04012 PspA_IM30: PspA/IM30 30.9 5.1E+02 0.011 25.3 14.2 32 252-283 101-132 (221)
245 cd07647 F-BAR_PSTPIP The F-BAR 30.9 5.5E+02 0.012 25.6 17.0 29 100-128 16-45 (239)
246 TIGR01843 type_I_hlyD type I s 30.9 4.6E+02 0.0099 27.6 10.9 60 226-285 128-187 (423)
247 PF04108 APG17: Autophagy prot 30.8 7.4E+02 0.016 27.1 22.7 14 168-181 252-265 (412)
248 KOG0804 Cytoplasmic Zn-finger 30.8 2.9E+02 0.0063 30.9 9.3 35 220-254 378-412 (493)
249 KOG0837 Transcriptional activa 30.7 2.7E+02 0.0059 29.0 8.5 89 205-294 179-269 (279)
250 smart00787 Spc7 Spc7 kinetocho 30.6 6.7E+02 0.015 26.5 14.2 39 252-290 235-281 (312)
251 cd07591 BAR_Rvs161p The Bin/Am 30.4 5.7E+02 0.012 25.6 11.3 18 265-282 146-163 (224)
252 PF12718 Tropomyosin_1: Tropom 30.2 4.6E+02 0.01 24.5 10.5 67 223-289 16-82 (143)
253 PF01093 Clusterin: Clusterin; 30.1 3.3E+02 0.0071 30.4 9.7 44 224-267 16-59 (436)
254 cd07909 YciF YciF bacterial st 29.8 2.9E+02 0.0062 26.1 8.1 27 267-293 37-63 (147)
255 PF12455 Dynactin: Dynein asso 29.7 69 0.0015 33.1 4.3 81 210-290 144-226 (274)
256 PRK10203 hypothetical protein; 29.7 4.3E+02 0.0093 24.4 8.9 13 107-119 2-14 (122)
257 PF10475 DUF2450: Protein of u 29.1 6.5E+02 0.014 25.9 12.8 20 193-212 62-81 (291)
258 PF05600 DUF773: Protein of un 29.1 4.5E+02 0.0098 29.7 10.8 16 276-291 477-492 (507)
259 TIGR02168 SMC_prok_B chromosom 29.1 1.1E+03 0.023 28.4 14.8 15 21-35 36-50 (1179)
260 PF12018 DUF3508: Domain of un 29.0 3.8E+02 0.0083 27.7 9.6 16 226-241 50-65 (281)
261 KOG4592 Uncharacterized conser 28.8 3E+02 0.0064 32.1 9.2 20 496-515 236-256 (728)
262 TIGR01069 mutS2 MutS2 family p 28.7 4.8E+02 0.01 31.0 11.5 42 219-260 513-554 (771)
263 PF00038 Filament: Intermediat 28.7 6.5E+02 0.014 25.7 13.4 30 221-250 72-101 (312)
264 cd09236 V_AnPalA_UmRIM20_like 28.7 3.6E+02 0.0079 28.7 9.6 65 220-289 278-342 (353)
265 PF11172 DUF2959: Protein of u 28.5 6.2E+02 0.013 25.4 12.1 49 220-269 60-109 (201)
266 COG4477 EzrA Negative regulato 28.5 9.6E+02 0.021 27.6 13.3 69 224-292 281-366 (570)
267 cd07635 BAR_GRAF2 The Bin/Amph 28.4 6.2E+02 0.013 25.4 12.1 31 231-261 67-97 (207)
268 PF03238 ESAG1: ESAG protein; 28.3 2.2E+02 0.0047 28.9 7.2 36 245-280 39-74 (231)
269 PF12729 4HB_MCP_1: Four helix 28.3 4.2E+02 0.009 23.4 12.3 25 219-243 77-101 (181)
270 cd03572 ENTH_epsin_related ENT 28.2 4.5E+02 0.0098 24.1 8.8 61 24-87 22-82 (122)
271 PF12777 MT: Microtubule-bindi 28.1 4.5E+02 0.0098 27.8 10.2 27 8-34 1-27 (344)
272 PF04799 Fzo_mitofusin: fzo-li 28.0 3.4E+02 0.0074 26.5 8.4 15 276-290 147-161 (171)
273 KOG0612 Rho-associated, coiled 28.0 4.9E+02 0.011 32.7 11.2 38 255-292 514-551 (1317)
274 KOG0260 RNA polymerase II, lar 28.0 1.4E+03 0.029 29.2 14.7 22 53-74 945-966 (1605)
275 PLN03094 Substrate binding sub 27.9 7.3E+02 0.016 27.0 11.8 62 220-281 289-352 (370)
276 PF07139 DUF1387: Protein of u 27.7 4.3E+02 0.0093 28.1 9.6 6 192-197 164-169 (302)
277 KOG4643 Uncharacterized coiled 27.6 1E+03 0.022 29.6 13.5 23 232-254 485-507 (1195)
278 PLN03223 Polycystin cation cha 27.6 1.2E+03 0.026 30.1 14.4 56 79-134 1411-1477(1634)
279 PF11945 WASH_WAHD: WAHD domai 27.6 2.1E+02 0.0046 30.2 7.4 53 233-285 20-72 (297)
280 cd00632 Prefoldin_beta Prefold 27.5 4.1E+02 0.009 23.1 11.1 17 225-241 60-76 (105)
281 PF13851 GAS: Growth-arrest sp 27.4 6.1E+02 0.013 25.0 11.1 30 219-248 57-86 (201)
282 PF14515 HOASN: Haem-oxygenase 27.4 1E+02 0.0023 26.5 4.2 33 323-356 18-50 (93)
283 PHA02557 22 prohead core prote 27.2 7.4E+02 0.016 25.9 11.4 53 230-289 164-219 (271)
284 PF14257 DUF4349: Domain of un 27.1 2.2E+02 0.0048 28.7 7.4 59 233-293 134-192 (262)
285 PRK10869 recombination and rep 26.9 9.8E+02 0.021 27.2 13.9 46 244-289 340-386 (553)
286 PRK10929 putative mechanosensi 26.9 5E+02 0.011 32.4 11.4 11 281-291 152-162 (1109)
287 PF03154 Atrophin-1: Atrophin- 26.9 5.8E+02 0.013 31.2 11.5 13 383-395 160-172 (982)
288 COG4913 Uncharacterized protei 26.8 9.9E+02 0.021 28.8 12.9 74 219-292 300-381 (1104)
289 PHA03247 large tegument protei 26.8 1.3E+03 0.028 31.9 15.0 6 350-355 2540-2545(3151)
290 PF14133 DUF4300: Domain of un 26.8 1.9E+02 0.004 29.9 6.7 117 1-117 6-162 (250)
291 PF10303 DUF2408: Protein of u 26.6 5.2E+02 0.011 24.0 9.1 20 276-295 108-127 (134)
292 PF05852 DUF848: Gammaherpesvi 26.5 5.7E+02 0.012 24.4 9.8 70 221-292 35-108 (146)
293 PF04011 LemA: LemA family; I 26.3 5.8E+02 0.013 24.4 12.7 61 223-283 87-152 (186)
294 TIGR00383 corA magnesium Mg(2+ 26.2 5.7E+02 0.012 26.2 10.4 16 239-254 186-201 (318)
295 PF04778 LMP: LMP repeated reg 26.1 6E+02 0.013 24.5 11.8 83 168-259 23-106 (157)
296 PRK10947 global DNA-binding tr 26.0 2.7E+02 0.0058 26.1 7.1 44 232-275 25-68 (135)
297 KOG3915 Transcription regulato 25.8 3.5E+02 0.0075 30.5 8.8 28 221-248 546-573 (641)
298 cd07631 BAR_APPL1 The Bin/Amph 25.8 7.1E+02 0.015 25.2 13.2 75 171-261 20-95 (215)
299 cd07664 BAR_SNX2 The Bin/Amphi 25.8 7.1E+02 0.015 25.2 10.9 23 219-241 161-183 (234)
300 KOG0946 ER-Golgi vesicle-tethe 25.7 9.1E+02 0.02 29.3 12.5 75 219-293 794-868 (970)
301 TIGR00606 rad50 rad50. This fa 25.7 1.2E+03 0.027 29.3 14.8 116 173-291 781-899 (1311)
302 PHA02562 46 endonuclease subun 25.6 9.4E+02 0.02 26.6 16.0 6 189-194 256-261 (562)
303 PF14361 RsbRD_N: RsbT co-anta 25.5 2.4E+02 0.0051 24.5 6.4 85 36-130 8-99 (105)
304 COG1382 GimC Prefoldin, chaper 25.4 5.4E+02 0.012 23.7 11.6 39 246-284 67-105 (119)
305 KOG1103 Predicted coiled-coil 25.4 4.7E+02 0.01 28.6 9.4 44 219-262 137-184 (561)
306 cd09238 V_Alix_like_1 Protein- 25.4 3.3E+02 0.0072 28.9 8.6 49 243-291 286-334 (339)
307 cd07615 BAR_Endophilin_A3 The 25.3 7.2E+02 0.016 25.2 13.7 45 222-266 155-200 (223)
308 cd07592 BAR_Endophilin_A The B 25.3 7.1E+02 0.015 25.1 13.7 12 189-200 89-100 (223)
309 KOG1937 Uncharacterized conser 25.2 1E+03 0.022 26.9 13.5 38 38-75 30-78 (521)
310 KOG2148 Exocyst protein Sec3 [ 25.2 1E+03 0.022 28.2 12.6 119 168-290 158-287 (867)
311 PF01920 Prefoldin_2: Prefoldi 25.2 4.2E+02 0.0091 22.4 8.0 46 219-271 52-98 (106)
312 TIGR00996 Mtu_fam_mce virulenc 25.1 3.6E+02 0.0078 27.4 8.6 45 246-290 189-233 (291)
313 PF15254 CCDC14: Coiled-coil d 25.0 1E+03 0.022 28.6 12.7 99 170-268 383-488 (861)
314 cd00632 Prefoldin_beta Prefold 24.8 4.7E+02 0.01 22.8 8.7 21 221-241 63-83 (105)
315 PF12588 PSDC: Phophatidylseri 24.8 1.7E+02 0.0038 27.5 5.6 93 22-114 3-111 (141)
316 PF00038 Filament: Intermediat 24.7 7.6E+02 0.017 25.2 11.7 70 221-290 227-296 (312)
317 PF07888 CALCOCO1: Calcium bin 24.7 6.8E+02 0.015 28.8 11.2 11 198-208 220-230 (546)
318 PF10046 BLOC1_2: Biogenesis o 24.7 4.7E+02 0.01 22.8 10.9 23 220-242 48-70 (99)
319 PF06632 XRCC4: DNA double-str 24.6 6.7E+02 0.014 27.0 10.6 53 225-277 152-208 (342)
320 COG3935 DnaD Putative primosom 24.5 1.9E+02 0.0042 29.7 6.3 25 101-125 178-203 (246)
321 PRK09039 hypothetical protein; 24.5 8.8E+02 0.019 25.9 14.8 59 231-289 140-199 (343)
322 KOG0612 Rho-associated, coiled 24.4 1E+03 0.022 30.1 12.9 31 261-291 541-571 (1317)
323 PF05278 PEARLI-4: Arabidopsis 24.1 8.4E+02 0.018 25.5 15.4 148 66-263 111-260 (269)
324 COG5290 IkappaB kinase complex 24.0 1.2E+03 0.026 28.5 13.0 84 10-93 944-1043(1243)
325 KOG2991 Splicing regulator [RN 23.9 8.6E+02 0.019 25.5 11.2 20 189-208 215-234 (330)
326 cd08802 Death_UNC5B Death doma 23.8 70 0.0015 27.6 2.6 27 104-130 45-71 (84)
327 PF10158 LOH1CR12: Tumour supp 23.8 5.9E+02 0.013 23.6 10.9 47 189-243 39-89 (131)
328 PRK13729 conjugal transfer pil 23.8 2.8E+02 0.0061 31.2 7.8 67 179-257 57-123 (475)
329 PF15358 TSKS: Testis-specific 23.7 6E+02 0.013 28.4 10.0 74 219-292 158-233 (558)
330 KOG1962 B-cell receptor-associ 23.7 4.5E+02 0.0097 26.7 8.5 65 226-293 149-213 (216)
331 KOG4368 Predicted RNA binding 23.7 5.4E+02 0.012 29.9 10.0 20 221-240 211-230 (757)
332 COG1382 GimC Prefoldin, chaper 23.6 5E+02 0.011 23.9 8.2 48 220-274 61-109 (119)
333 cd09235 V_Alix Middle V-domain 23.5 8.9E+02 0.019 25.6 11.6 44 246-289 289-332 (339)
334 PLN02939 transferase, transfer 23.4 5.5E+02 0.012 31.6 10.6 42 222-263 356-397 (977)
335 PF04136 Sec34: Sec34-like fam 23.3 6E+02 0.013 24.0 9.1 56 233-288 2-57 (157)
336 KOG2085 Serine/threonine prote 23.2 1.8E+02 0.004 32.2 6.1 77 35-117 294-370 (457)
337 PF15463 ECM11: Extracellular 23.1 4.1E+02 0.009 24.5 7.8 35 219-253 85-119 (139)
338 PRK04863 mukB cell division pr 23.1 1.6E+03 0.036 29.0 15.1 30 100-133 192-225 (1486)
339 KOG0972 Huntingtin interacting 23.1 8.9E+02 0.019 25.9 10.8 14 5-18 16-29 (384)
340 PF12999 PRKCSH-like: Glucosid 23.1 4.6E+02 0.01 25.7 8.3 40 235-274 132-171 (176)
341 smart00035 CLa CLUSTERIN alpha 23.1 5.1E+02 0.011 26.3 8.7 39 253-291 99-137 (216)
342 PF15272 BBP1_C: Spindle pole 23.0 7.5E+02 0.016 24.7 9.9 90 198-289 2-98 (196)
343 KOG4403 Cell surface glycoprot 22.9 6.7E+02 0.014 28.2 10.2 25 322-346 364-401 (575)
344 PRK04406 hypothetical protein; 22.9 4.6E+02 0.01 22.0 8.2 14 253-266 15-28 (75)
345 COG0576 GrpE Molecular chapero 22.8 5.7E+02 0.012 25.1 9.1 88 198-290 43-135 (193)
346 PF01021 TYA: TYA transposon p 22.6 61 0.0013 28.2 2.0 10 514-523 83-92 (98)
347 KOG4552 Vitamin-D-receptor int 22.6 7.5E+02 0.016 25.2 9.7 11 282-292 90-100 (272)
348 KOG0162 Myosin class I heavy c 22.5 3.6E+02 0.0078 32.2 8.5 6 351-356 864-869 (1106)
349 cd07657 F-BAR_Fes_Fer The F-BA 22.5 8.1E+02 0.018 24.7 13.8 28 100-127 16-44 (237)
350 PF07464 ApoLp-III: Apolipopho 22.5 4.5E+02 0.0097 25.2 8.0 94 195-292 38-151 (155)
351 PF04880 NUDE_C: NUDE protein, 22.3 1.5E+02 0.0032 28.8 4.8 13 226-238 2-14 (166)
352 PF12004 DUF3498: Domain of un 22.3 29 0.00063 38.9 0.0 19 190-208 361-379 (495)
353 cd07595 BAR_RhoGAP_Rich-like T 22.3 8.4E+02 0.018 24.8 11.5 108 180-287 73-201 (244)
354 PF05227 CHASE3: CHASE3 domain 22.3 4.5E+02 0.0098 22.9 7.7 58 220-288 38-95 (138)
355 PRK04863 mukB cell division pr 22.2 1.1E+03 0.024 30.5 13.4 30 252-281 438-467 (1486)
356 cd07653 F-BAR_CIP4-like The F- 22.1 7.7E+02 0.017 24.4 16.3 28 100-127 16-44 (251)
357 PF14915 CCDC144C: CCDC144C pr 22.1 9.7E+02 0.021 25.5 12.1 66 213-279 141-209 (305)
358 TIGR02169 SMC_prok_A chromosom 22.1 1.2E+03 0.026 28.1 13.5 13 21-33 36-48 (1164)
359 COG1722 XseB Exonuclease VII s 21.9 5.1E+02 0.011 22.2 7.8 11 231-241 17-27 (81)
360 PRK10328 DNA binding protein, 21.9 3.9E+02 0.0084 25.0 7.3 42 233-274 26-67 (134)
361 cd07651 F-BAR_PombeCdc15_like 21.5 8E+02 0.017 24.3 17.3 28 100-127 16-44 (236)
362 PF06495 Transformer: Fruit fl 21.5 1.4E+02 0.0031 29.2 4.4 18 440-458 135-152 (182)
363 PF12329 TMF_DNA_bd: TATA elem 21.4 4.8E+02 0.01 21.7 10.6 42 226-267 24-65 (74)
364 KOG1029 Endocytic adaptor prot 21.4 5.8E+02 0.013 30.8 9.8 30 377-406 747-776 (1118)
365 PRK14064 exodeoxyribonuclease 21.4 1.9E+02 0.004 24.4 4.6 25 219-243 29-53 (75)
366 TIGR00996 Mtu_fam_mce virulenc 21.3 8.6E+02 0.019 24.6 12.8 14 169-182 132-145 (291)
367 KOG4451 Uncharacterized conser 21.3 9.2E+02 0.02 24.9 14.7 21 255-275 129-149 (286)
368 COG5374 Uncharacterized conser 21.1 5.5E+02 0.012 25.4 8.3 29 247-275 155-183 (192)
369 PF05633 DUF793: Protein of un 21.1 5.8E+02 0.013 28.1 9.4 70 219-291 310-387 (389)
370 PF07079 DUF1347: Protein of u 21.0 5.9E+02 0.013 28.9 9.5 103 22-130 243-383 (549)
371 cd07598 BAR_FAM92 The Bin/Amph 21.0 8.4E+02 0.018 24.3 11.1 98 193-290 59-163 (211)
372 TIGR02680 conserved hypothetic 20.8 1.7E+03 0.037 28.4 14.7 13 321-333 1085-1097(1353)
373 COG2882 FliJ Flagellar biosynt 20.8 7.4E+02 0.016 23.6 12.1 6 176-181 7-12 (148)
374 cd09237 V_ScBro1_like Protein- 20.7 6.9E+02 0.015 26.5 9.9 50 242-291 302-351 (356)
375 PF02403 Seryl_tRNA_N: Seryl-t 20.7 4.2E+02 0.009 22.9 7.0 57 235-291 26-85 (108)
376 cd00176 SPEC Spectrin repeats, 20.6 6.5E+02 0.014 22.9 11.8 38 218-256 87-124 (213)
377 TIGR02169 SMC_prok_A chromosom 20.5 1.4E+03 0.03 27.6 13.5 7 444-450 1075-1081(1164)
378 PF11221 Med21: Subunit 21 of 20.4 4.6E+02 0.01 24.3 7.6 14 199-212 77-90 (144)
379 PF05802 EspB: Enterobacterial 20.4 1E+03 0.023 25.2 10.8 20 248-267 54-73 (317)
380 PF08614 ATG16: Autophagy prot 20.4 5.9E+02 0.013 24.6 8.6 71 223-293 104-174 (194)
381 TIGR01280 xseB exodeoxyribonuc 20.4 2E+02 0.0044 23.5 4.6 47 218-268 9-55 (67)
382 PF10186 Atg14: UV radiation r 20.3 8.6E+02 0.019 24.2 15.7 6 340-345 210-215 (302)
383 PF05546 She9_MDM33: She9 / Md 20.3 6.8E+02 0.015 25.2 9.0 20 335-354 124-143 (207)
384 cd07624 BAR_SNX7_30 The Bin/Am 20.3 8E+02 0.017 23.9 12.8 15 224-238 102-116 (200)
385 KOG2051 Nonsense-mediated mRNA 20.2 1.6E+03 0.034 28.1 13.3 13 9-21 37-49 (1128)
386 PF01544 CorA: CorA-like Mg2+ 20.1 7E+02 0.015 24.6 9.4 16 219-234 146-161 (292)
387 PRK03918 chromosome segregatio 20.0 1.5E+03 0.032 26.8 14.9 14 21-34 36-49 (880)
388 PF05008 V-SNARE: Vesicle tran 20.0 4.8E+02 0.01 21.2 8.1 24 219-242 23-46 (79)
389 PF03962 Mnd1: Mnd1 family; I 20.0 7.9E+02 0.017 24.0 9.4 79 191-281 69-153 (188)
No 1
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=100.00 E-value=1.3e-47 Score=390.18 Aligned_cols=289 Identities=39% Similarity=0.585 Sum_probs=253.1
Q ss_pred CCCCHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHH
Q 009811 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEF 82 (525)
Q Consensus 3 ~~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF 82 (525)
++|+++.|.+||.+|++||+||+++|+|||+||++|+.||++|+++|+++..++||.||||||||||||+||+.+|+++|
T Consensus 2 ~~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQnskrk~~ef~~ef 81 (325)
T KOG2669|consen 2 SAFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNSKRKGPEFVDEF 81 (325)
T ss_pred CcccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHhhhcCchhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchhh-HHHHHHhcCCCCCCCccccccCCCCcccccccCCccc-c
Q 009811 83 WKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA-RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSI-R 160 (525)
Q Consensus 83 ~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~i-~~Lke~llg~~~p~~l~~~~kk~~~~~k~~~~ds~~~-~ 160 (525)
|+++..+|.+++...+.+++++|.|||+||++|+||++++ ..|++. ++...|++++.. ++..++.+..+++.... .
T Consensus 82 ~~v~~~a~~~i~~~~~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~-l~~e~p~~~d~~-~~~~~~~~~~k~~~~~~~~ 159 (325)
T KOG2669|consen 82 WPVVLKAFAHIVEETDVKCKKKLGRLINIWEERNVFSPESLVDLEES-LGAEKPPPLDEA-KKLPRGSKQIKLDEKGSKP 159 (325)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHhccCCHHHHHHHHHH-hcccCCcchhhh-hccccchHhhhhhhhccCC
Confidence 9999999999999889999999999999999999999995 666654 445555655555 55544444444443221 2
Q ss_pred ccccCCCchhhhHHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCC---CcchhHHHHHHHHHHHHHHHHH
Q 009811 161 TKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAK---DPKRKTLSKELEEEENMLKQCI 237 (525)
Q Consensus 161 ~k~~~g~~~ekivsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~---d~r~~~l~keLee~e~~lke~I 237 (525)
.....|+..++|.+.++.+...+..+++.+..|+.+..++..+.+++.+.|.+++ ..+...+.+.+++.+..|++++
T Consensus 160 ~~~~~~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~~i~~~~~e~~e~~~~~k~~~~~~~e~~~k~lee~~~lL~e~~ 239 (325)
T KOG2669|consen 160 GLSSLGEVHEKIDSSVELVRALQSLENAASKLDAVLEERIARLPQEVEEVSSLEKITLNSLIESLAKHLEEEEMLLREVN 239 (325)
T ss_pred CCCCccccchhHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234467788888888777777777778888999999999999999999999875 2347899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 238 EKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 238 eqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
..|.+.+..|..+.+.|+++|.++++.++..+.++..+.-..+++.++++++.+..
T Consensus 240 ~~L~s~~~~~~~~~~~l~d~l~~q~~~l~~~~~~~~~~k~~l~~~~n~~~~~~~~~ 295 (325)
T KOG2669|consen 240 PRLAAEEESRRQLVSMLRDALREQKEELNDEEPQLEEYKEKLDKAQNVQKELNDPL 295 (325)
T ss_pred HHhcccchhhhhhHHHHHHHHhhhhccccccccCchhhhhhHHHHhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999874
No 2
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.94 E-value=7.2e-27 Score=207.66 Aligned_cols=119 Identities=41% Similarity=0.712 Sum_probs=112.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-ChhhHHHHHHHHH
Q 009811 9 ILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-GNEFVTEFWKVLP 87 (525)
Q Consensus 9 ~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g~eF~~aF~~vLp 87 (525)
.|+++|++|++|+++|++++.||++|.+++..||++|.+++++++.++||++|||+|||+|||+++ +..|..+|.++++
T Consensus 1 ~f~~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~ 80 (121)
T smart00582 1 AFEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQ 80 (121)
T ss_pred ChHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999987 5889999999999
Q ss_pred HHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 88 AALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 88 ~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
.+|.+++...+++.+++|.|||+||++|+||+++ +..|++
T Consensus 81 ~~~~~~~~~~~~~~~~ki~kll~iW~~~~iF~~~~i~~L~~ 121 (121)
T smart00582 81 DALRDVLGAANDETKKKIRRLLNIWEERGIFPPSVLRPLRE 121 (121)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHhhC
Confidence 9999999877789999999999999999999999 677763
No 3
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.91 E-value=2.8e-24 Score=189.81 Aligned_cols=114 Identities=39% Similarity=0.561 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHH
Q 009811 4 VFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFW 83 (525)
Q Consensus 4 ~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~ 83 (525)
.|+.+.+.++|..+++|+++|++++.||++|+++|..||++|.++++++..++||++|||+|||+|||+++...+ |.
T Consensus 1 ~~~~~~~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~---~~ 77 (114)
T cd03562 1 VFDYNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEF---FS 77 (114)
T ss_pred CccHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHH---HH
Confidence 478899999999999999999999999999999999999999999999999999999999999999999886544 44
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccch
Q 009811 84 KVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS 120 (525)
Q Consensus 84 ~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~ 120 (525)
..++.+|.+++...|++.+++|.||++||++|++|+.
T Consensus 78 ~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~~~f~~ 114 (114)
T cd03562 78 EFLVPLFLDAYEKVDEKTRKKLERLLNIWEERFVFGS 114 (114)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCCCCCC
Confidence 4558888888888899999999999999999999973
No 4
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=99.74 E-value=1.1e-18 Score=139.88 Aligned_cols=63 Identities=54% Similarity=0.834 Sum_probs=58.9
Q ss_pred ccchhhhhHHHHHHhhhcCh-hhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccc
Q 009811 57 KVPLLYLANDILQNSKRKGN-EFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFG 119 (525)
Q Consensus 57 KL~lLYLaNDVlQnSkrKg~-eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~ 119 (525)
||++|||||||+|||++++. +|.++|+++|+.+|.+++..+|++.+++|.||++||++|+||+
T Consensus 1 KL~~lYl~ndI~q~sk~k~~~~f~~~F~~~l~~~~~~~~~~~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNSKRKNPDEFAPAFSPVLPDAFAHAYKNVDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHCHHHHHHCCHHHHHHHHCCCS-HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhCCCCCC
Confidence 79999999999999999884 9999999999999999998889999999999999999999996
No 5
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.64 E-value=4.4e-16 Score=169.91 Aligned_cols=128 Identities=20% Similarity=0.367 Sum_probs=114.8
Q ss_pred CHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHh--cCCcCcccchhhhhHHHHHHhhhc--C-hhhHH
Q 009811 6 SEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFH--SSQLVQKVPLLYLANDILQNSKRK--G-NEFVT 80 (525)
Q Consensus 6 sed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~--ks~~~kKL~lLYLaNDVlQnSkrK--g-~eF~~ 80 (525)
..+.|+.+|+.||.-+.+|..++-|||+|.+.|.+||+|+.+.|. ..+..+||++|||+||||+||..+ + +-|+.
T Consensus 432 qRdklE~liR~LTpEk~sIg~aM~FalenA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~YR~ 511 (877)
T KOG0151|consen 432 QRDKLEDLIRGLTPEKSSIGDAMVFALENADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASAYRK 511 (877)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHhhhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 468999999999999999999999999999999999999999986 478899999999999999999843 3 78999
Q ss_pred HHHHHHHHHHHHHhh---c-----CCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcCCC
Q 009811 81 EFWKVLPAALKDVVE---N-----GDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLGGE 133 (525)
Q Consensus 81 aF~~vLp~a~~~v~~---~-----~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg~~ 133 (525)
.|+..|+.+|..++. . ..+.++++|.+||.+|++|-||+.+ +.+|...++|-.
T Consensus 512 ~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fkqRV~kVirvWedW~ifpe~~l~~l~~~Flg~~ 573 (877)
T KOG0151|consen 512 SFEATLEDIFDDLNDLYRSIGGRIKAEAFKQRVMKVIRVWEDWAIFPEDFLIGLQNTFLGLN 573 (877)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhcCC
Confidence 999999999987652 1 1456799999999999999999999 799999999853
No 6
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=99.45 E-value=9.4e-13 Score=121.50 Aligned_cols=123 Identities=15% Similarity=0.353 Sum_probs=110.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcC---hhhHHHHH
Q 009811 7 EQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKG---NEFVTEFW 83 (525)
Q Consensus 7 ed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg---~eF~~aF~ 83 (525)
.-+|...|++||.|++||+.+++|.|.|+..++.+.+|+++.|.+.+.+.|+++||++..+++.|.+.+ ..|+....
T Consensus 7 r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l~ 86 (139)
T PF12243_consen 7 RMQFTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSMLQ 86 (139)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999998654 79999999
Q ss_pred HHHHHHHHHHhhcCCc--chhhHHHHHHHHhhhccccchh-hHHHHHHh
Q 009811 84 KVLPAALKDVVENGDD--SGKNVVSRLVNIWDERRVFGSR-ARGVKDVM 129 (525)
Q Consensus 84 ~vLp~a~~~v~~~~d~--~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~l 129 (525)
..|+.++..|...+.. ...+.+.+||+.|.+|++++.. +.++.+.|
T Consensus 87 ~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l 135 (139)
T PF12243_consen 87 RDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKKILDPEEYEEIEASL 135 (139)
T ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999864433 5789999999999999999988 56665544
No 7
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=99.41 E-value=3.9e-12 Score=136.93 Aligned_cols=127 Identities=19% Similarity=0.424 Sum_probs=105.9
Q ss_pred CCHHHHHHHHhhc--cCCHHHHHHHHHHHHhccc---chHHHHHHHHHHHhc--CCcCcccchhhhhHHHHHHhhhcC-h
Q 009811 5 FSEQILAEKLSKL--NCTQQCIETLSHWCIFHRS---KAELVVATWDKQFHS--SQLVQKVPLLYLANDILQNSKRKG-N 76 (525)
Q Consensus 5 Fsed~l~~kL~~L--n~SQeSIqtlS~W~i~h~k---~A~~IV~~W~k~l~k--s~~~kKL~lLYLaNDVlQnSkrKg-~ 76 (525)
++.+.|...|+.+ ++|++.|...+.||+++++ +++.|+..+++.++. +.++-||+||||+|||+++|.||. .
T Consensus 101 l~~~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcqrk~~~ 180 (757)
T KOG4368|consen 101 LDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQAR 180 (757)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4556666666644 5899999999999999997 578888888888875 688899999999999999999986 6
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcC
Q 009811 77 EFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLG 131 (525)
Q Consensus 77 eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg 131 (525)
+...++.+|+.-+.+.-+....+.-.+++.|||..||.|++|++. |+.|+...+|
T Consensus 181 ~~~~~l~~~v~~~yc~~~~~~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~ 236 (757)
T KOG4368|consen 181 ELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALG 236 (757)
T ss_pred HHHHHHHHHhHHHHHhhhhhhHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhhhh
Confidence 899999999877777655445566678999999999999999988 6999876554
No 8
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.67 E-value=4.8e-08 Score=108.97 Aligned_cols=125 Identities=21% Similarity=0.317 Sum_probs=110.1
Q ss_pred HHHHHHHhhccC-----CHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc----Chhh
Q 009811 8 QILAEKLSKLNC-----TQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK----GNEF 78 (525)
Q Consensus 8 d~l~~kL~~Ln~-----SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK----g~eF 78 (525)
..|...|.+|.. |..-|..+....|.|.+.++.||....++++++..++||.-||+++.|+..++.. ++.|
T Consensus 5 ~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~kCkpe~Kl~gLYVIDSIVRqsrhq~~~~kd~F 84 (894)
T KOG0132|consen 5 KEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKKCKPEYKLPGLYVIDSIVRQSRHQFGKEKDVF 84 (894)
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCeeEEehHHHHHHHHhhccccccc
Confidence 467778888885 5668899999999999999999999999999999999999999999999999852 3689
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcCCC
Q 009811 79 VTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLGGE 133 (525)
Q Consensus 79 ~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg~~ 133 (525)
...|.+.+-..|..+|++ ..+.+.++.|++++|...+||-.+ |+-|.|...+..
T Consensus 85 ~prf~~n~~~tf~~L~~c-~~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~~s~ 139 (894)
T KOG0132|consen 85 GPRFSKNFTGTFQNLYEC-PQEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMADGSG 139 (894)
T ss_pred CCccchhHHHHHHHHHhc-CHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHhccC
Confidence 999999999999999875 455688899999999999999887 899999887653
No 9
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=97.68 E-value=0.00012 Score=81.03 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=95.3
Q ss_pred HHHHHHhhcc-CCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHH
Q 009811 9 ILAEKLSKLN-CTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLP 87 (525)
Q Consensus 9 ~l~~kL~~Ln-~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp 87 (525)
.+...|..|+ +++.-|.++..-.-++...|..||..+.+++.++....||..+||+..|+.| -|.+|...|...|.
T Consensus 8 dy~s~ledltfnskp~i~~lt~la~En~~~a~~iv~~iE~hi~kcpp~~kL~~~y~~dsi~kn---vg~py~~~fs~~l~ 84 (579)
T KOG2071|consen 8 DYQSSLEDLTFNSKPIINTLTILAEENLPFAKSIVSAIEAHIAKCPPSQKLPVMYLLDSIVKN---VGSPYTTAFSRNLV 84 (579)
T ss_pred HHHHHHHHHhcCCcchhHHhhHhhhhcccccHHHHHHHHHHHhhCCcccccchhhhhHHHHhh---cCCcchhhhhhhHH
Confidence 3556677887 8999999999999999999999999999999999999999999999999977 66789999999999
Q ss_pred HHHHHHhhcCCcchhhHHHHHHHHhh
Q 009811 88 AALKDVVENGDDSGKNVVSRLVNIWD 113 (525)
Q Consensus 88 ~a~~~v~~~~d~~~kkkV~Rll~IWe 113 (525)
..|..+|...|+..|.++.+++..|.
T Consensus 85 a~f~~~~~~vd~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 85 ATFICAFTKVDERTRTSLFKLRATWD 110 (579)
T ss_pred HHHHHHHhhccccccchhHhhHHhhc
Confidence 99999999999999999999999999
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.29 E-value=0.0062 Score=69.35 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=6.5
Q ss_pred HHHHHHHhhccc
Q 009811 281 EACNMRKRLNDE 292 (525)
Q Consensus 281 ra~~lr~~Ld~~ 292 (525)
++.++.++++..
T Consensus 475 kA~e~~kk~~ke 486 (1102)
T KOG1924|consen 475 KAAELEKKFDKE 486 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 11
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.98 E-value=0.0035 Score=71.27 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhc---------CCcchhhHHHHHHHHh
Q 009811 76 NEFVTEFWKVLPAALKDVVEN---------GDDSGKNVVSRLVNIW 112 (525)
Q Consensus 76 ~eF~~aF~~vLp~a~~~v~~~---------~d~~~kkkV~Rll~IW 112 (525)
-.|++.|+----+.+.++... -|.+....+.|||+.+
T Consensus 174 VSwvn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 174 VSWVNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAF 219 (1102)
T ss_pred cHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 478888876444444433321 1344555666666543
No 12
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=94.66 E-value=0.24 Score=52.48 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=58.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 216 DPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 216 d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
+++.....++.+...+.+..++..|+.++..+..|+++|++++.||.+..+.+....+.++.|++
T Consensus 290 ~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~fv~ 354 (356)
T cd09237 290 LPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQAFVN 354 (356)
T ss_pred CccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456666777888899999999999999999999999999999999999999999999999886
No 13
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.51 E-value=0.95 Score=52.21 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=10.1
Q ss_pred hhhHHHHHHHhhhcccHHHHH
Q 009811 170 EKIVSAYHLVLCEQLSEEEEM 190 (525)
Q Consensus 170 ekivsa~q~l~~~~~~e~~~l 190 (525)
|++..-++.+.|..+|..+.|
T Consensus 135 e~l~~Q~~sy~dn~~dv~all 155 (830)
T KOG1923|consen 135 EELQRQFQSYTDNLTDVRALL 155 (830)
T ss_pred HHHHHHHHHHhhhHHHHHHhc
Confidence 344444555555555444433
No 14
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=94.44 E-value=0.18 Score=44.52 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHH--HHHHHHHHHhh--
Q 009811 20 TQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWK--VLPAALKDVVE-- 95 (525)
Q Consensus 20 SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~--vLp~a~~~v~~-- 95 (525)
+-.-|..+..-+-.....+..++....++|...+....|.-|||+.-+++||-. .|..+|.. ++-++++..+.
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~---~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE---RFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH---HHHHHHHHhHHHHHHHHhhcccc
Confidence 456677777767555567899999999999988888899999999999999643 34444433 34444433221
Q ss_pred ---cCCcchhhHHHHHHHHhhh
Q 009811 96 ---NGDDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 96 ---~~d~~~kkkV~Rll~IWee 114 (525)
..+..+|+++..|+..|.+
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHhC
Confidence 2256789999999999964
No 15
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=0.56 Score=51.26 Aligned_cols=20 Identities=15% Similarity=-0.011 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009811 252 SQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 252 s~LkeAL~~qE~~lE~vr~~ 271 (525)
+-..+.+++.+.+.|..-.+
T Consensus 313 E~p~~e~dfSDDEkEaeak~ 332 (483)
T KOG2236|consen 313 EIPPREQDFSDDEKEAEAKQ 332 (483)
T ss_pred cCChhhhccchHHHHHHHHH
Confidence 34456666665554444333
No 16
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=91.99 E-value=1.7 Score=45.88 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 227 EEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 227 ee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
.+..+.+..++..|..++..+..|+++|++++.||.+..+.+....+.++.|++
T Consensus 282 ~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~~~~~~~~f~~ 335 (337)
T cd09234 282 SETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLEGNVSKLLQRIKSVCK 335 (337)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999999999999999999988875
No 17
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=91.74 E-value=2.4 Score=44.87 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
..+..++..|+.++..+..|+++|++++.||.+..+.+....+.++.|++
T Consensus 288 ~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~ 337 (339)
T cd09235 288 NEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEILVKFQNKCSDFVF 337 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999886
No 18
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=91.47 E-value=1.1 Score=47.69 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
+.....+.+..++..|+.++..+..|+++|++++.||.+..+.+....++++.|++
T Consensus 296 ~~~~~~~~re~~lq~L~~ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~ 351 (353)
T cd09236 296 KGDPATKERERALQSLDLAYFKYKEIVSNLDEGRKFYNDLAKILSQFRDACKAWVY 351 (353)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566778899999999999999999999999999999999999999999886
No 19
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=90.61 E-value=1.3 Score=46.86 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
......++..|+.++..+..|+++|++++.||.+..+.+....+.++.|++
T Consensus 287 ~~~re~~l~~L~~ay~~y~el~~~l~eG~kFY~dL~~~~~~l~~~~~~fv~ 337 (339)
T cd09238 287 RAATESHATQIRAAVAKYRELREGMEEGLRFYSGFQEAVRRLKQECEDFVM 337 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567788899999999999999999999999999999999999999986
No 20
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=90.36 E-value=1.8 Score=45.42 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 227 EEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 227 ee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
......+..++..|+.++..+..|.++|++++.||.+..+.+....+.++.|++
T Consensus 287 ~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~~~~~~f~~ 340 (342)
T cd08915 287 NDSLDPREEALQDLEASYKKYLELKENLNEGSKFYNDLIEKVNRLLEECEDFVN 340 (342)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677789999999999999999999999999999999999999999998875
No 21
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.32 E-value=0.77 Score=41.94 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-ChhhHHHHHHHHHHHHHHHhh--cCC
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-GNEFVTEFWKVLPAALKDVVE--NGD 98 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g~eF~~aF~~vLp~a~~~v~~--~~d 98 (525)
+.|-.+..-+-.....+++.+..+.++|+..+....+.-|+|+.-++.||-.. ..+|.. ..+|-+++..+.. ..+
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s--~~fl~~l~~l~~~~~~~~ 96 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD--KEFLLELVKIAKNSPKYD 96 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh--HHHHHHHHHHhCCCCCCC
Confidence 34444555454445678999999999999888888888899999999997543 223333 1123332332222 357
Q ss_pred cchhhHHHHHHHHhhhc
Q 009811 99 DSGKNVVSRLVNIWDER 115 (525)
Q Consensus 99 ~~~kkkV~Rll~IWeeR 115 (525)
..+++++..+|.-|.+.
T Consensus 97 ~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 97 PKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999973
No 22
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=89.79 E-value=6.6 Score=39.94 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEE 281 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~r 281 (525)
...+..++..|+.++..+..|.++|.+++.||....+.+....+.++.|++.
T Consensus 240 ~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~~~ 291 (296)
T PF13949_consen 240 QKERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFCNA 291 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888999999999999999999999999999999999999888763
No 23
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.37 E-value=3.5 Score=37.89 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-Chhh-HHHHHHHHHHHHHHHhhcCCc
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-GNEF-VTEFWKVLPAALKDVVENGDD 99 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g~eF-~~aF~~vLp~a~~~v~~~~d~ 99 (525)
+.|-.+..-+-.....+++++..+.++|+..+.+..+.-|.|++-++.||-.. ..++ ...|-..|..++.. ....
T Consensus 24 ~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~---~~~~ 100 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS---KKTD 100 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH---TTTH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc---CCCC
Confidence 44555555555555678999999999999988888888899999999998532 1111 12233333333332 2222
Q ss_pred c---hhhHHHHHHHHhhhcc
Q 009811 100 S---GKNVVSRLVNIWDERR 116 (525)
Q Consensus 100 ~---~kkkV~Rll~IWeeR~ 116 (525)
. +++++..+|..|.+.=
T Consensus 101 ~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 101 PETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHSHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 2 8999999999999765
No 24
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=46 Score=37.17 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=54.8
Q ss_pred ccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHH--HHHHHHHHHHHhhc-CCcchhhHHHHHHHH
Q 009811 35 RSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEF--WKVLPAALKDVVEN-GDDSGKNVVSRLVNI 111 (525)
Q Consensus 35 ~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF--~~vLp~a~~~v~~~-~d~~~kkkV~Rll~I 111 (525)
...++++|..+.++|......-.+..|+|+.-++.||=. .|-..+ ..+|.+++..+... .+.++|+||.-+|+-
T Consensus 33 ~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~---~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 33 EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGY---SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 346789999999999865554445556666667766643 232222 34677788877766 678899999999999
Q ss_pred hhh
Q 009811 112 WDE 114 (525)
Q Consensus 112 Wee 114 (525)
|.+
T Consensus 110 W~~ 112 (470)
T KOG1087|consen 110 WQQ 112 (470)
T ss_pred HHH
Confidence 985
No 25
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=88.11 E-value=3.4 Score=42.06 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCccccCCCCCC
Q 009811 376 VTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTM 419 (525)
Q Consensus 376 ~~~kr~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (525)
+.|||.+.+|..+. .--++|++.+..+-+...+.-.++|.+
T Consensus 98 ~~ekr~~~d~~~~~---~~~~p~~~~~~f~~~p~~p~g~~pp~~ 138 (341)
T KOG2893|consen 98 PDEKRSRMDNGPPM---PTPMPFPQHFPFPGMPPMPSGPPPPSM 138 (341)
T ss_pred chhhhhcccCCCCC---CCCCCCcccCCCCCCCCCCCCCCCccc
Confidence 56899999886543 334556666666555544443333333
No 26
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.80 E-value=3.4 Score=37.87 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-Chhh-HHHHHHHHHHHHHHHhhcCCc
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-GNEF-VTEFWKVLPAALKDVVENGDD 99 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g~eF-~~aF~~vLp~a~~~v~~~~d~ 99 (525)
+.|-.+..-+-.....++..+..+.++|...+....+.-|-|+..++.||-.+ ..++ ...|-..|..++. ...+.
T Consensus 19 ~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~---~~~~~ 95 (133)
T smart00288 19 ELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIK---PKYPL 95 (133)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHc---CCCCc
Confidence 34444444444444568999999999999877777788899999999997432 2222 1222222222222 22233
Q ss_pred -chhhHHHHHHHHhhh
Q 009811 100 -SGKNVVSRLVNIWDE 114 (525)
Q Consensus 100 -~~kkkV~Rll~IWee 114 (525)
.+++++..++.-|.+
T Consensus 96 ~~Vk~kil~li~~W~~ 111 (133)
T smart00288 96 PLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 389999999999987
No 27
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=85.73 E-value=7.5 Score=45.29 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhhccc--cchh-hHHHHH
Q 009811 103 NVVSRLVNIWDERRV--FGSR-ARGVKD 127 (525)
Q Consensus 103 kkV~Rll~IWeeR~V--F~~~-i~~Lke 127 (525)
..|..|++||+--.. |... ++.+..
T Consensus 126 e~IqpLlDm~~~s~~~~~p~~~~~~~p~ 153 (894)
T KOG0132|consen 126 EIIQPLLDMADGSGLSVFPKSPLQALPS 153 (894)
T ss_pred HHHHHHHHHHhccCccccCCCccCCCCC
Confidence 469999999998777 8766 555554
No 28
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.21 E-value=5.6 Score=37.07 Aligned_cols=82 Identities=12% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-C-----hhhHHHHHHHHHHHHHHHhhcCCc
Q 009811 26 TLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-G-----NEFVTEFWKVLPAALKDVVENGDD 99 (525)
Q Consensus 26 tlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g-----~eF~~aF~~vLp~a~~~v~~~~d~ 99 (525)
.+..-+-.....+++.+..+.++|...+.+..+.-|-|+.-++.||-.+ . .+|.+++.+.+.. ..+.
T Consensus 27 eicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-------~~~~ 99 (142)
T cd03569 27 EICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-------TKNE 99 (142)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-------cCCH
Confidence 3444444445578999999999998877777777799999999998532 1 2444444443322 4577
Q ss_pred chhhHHHHHHHHhhh
Q 009811 100 SGKNVVSRLVNIWDE 114 (525)
Q Consensus 100 ~~kkkV~Rll~IWee 114 (525)
.+++++..+|.-|.+
T Consensus 100 ~Vk~kil~li~~W~~ 114 (142)
T cd03569 100 EVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999995
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.08 E-value=19 Score=35.87 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=48.1
Q ss_pred HHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 190 MARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269 (525)
Q Consensus 190 l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr 269 (525)
|....++..++.+++++++.+ -.+|++....+++-...+......+...++.|++-+.+.+++++..+
T Consensus 85 Ls~~p~~~~rlp~le~el~~l------------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 85 LSTTPSLRTRVPDLENQVKTL------------TDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred hcCCccHHHHHHHHHHHHHHH------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888777642 23444444444455555555555666667777777777777777766
Q ss_pred HHHHHHHHHHHHHH
Q 009811 270 TQMQVAQAQAEEAC 283 (525)
Q Consensus 270 ~~~q~aq~~~~ra~ 283 (525)
+....+++..+...
T Consensus 153 ~~~~~l~~~~~~~~ 166 (206)
T PRK10884 153 KKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555555443
No 30
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.83 E-value=91 Score=38.08 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhc-----CCcCcc---cchhhhhHHHHHHhhhc-ChhhHHHHHHHHHHHHHH
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQFHS-----SQLVQK---VPLLYLANDILQNSKRK-GNEFVTEFWKVLPAALKD 92 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~l~k-----s~~~kK---L~lLYLaNDVlQnSkrK-g~eF~~aF~~vLp~a~~~ 92 (525)
+-|...=.+|+.+..++..+++.-.+.+.. .....+ |.=+=.+++-+++++.+ .|-+|.+-..-|-.....
T Consensus 210 ~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~ 289 (1074)
T KOG0250|consen 210 EQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEE 289 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666678888888998888887776642 111222 22244555566666665 377777777777777666
Q ss_pred Hh
Q 009811 93 VV 94 (525)
Q Consensus 93 v~ 94 (525)
+.
T Consensus 290 i~ 291 (1074)
T KOG0250|consen 290 IK 291 (1074)
T ss_pred HH
Confidence 54
No 31
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.65 E-value=16 Score=36.97 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
+|-+....+.+|-++|+...+-...|++.|.+.-.++++-.+.++..
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777788888888887888888877777666665555555444
No 32
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=81.43 E-value=15 Score=40.14 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASR-VALVSQLKEALHEQESELEN 267 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR-~~Lis~LkeAL~~qE~~lE~ 267 (525)
-..+-|.+-.+.+|++.++.++.+..- -.+-+.|++.+.+||.+.-+
T Consensus 74 lnEkvLkdkrKK~rEtfer~~rlye~~~p~~~~~L~r~eveye~kr~~ 121 (487)
T KOG4672|consen 74 LNEKVLKDKRKKRRETFERGKRLYEATEPVMFSHLQRREVEYEDKRPE 121 (487)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHhhhhhhhchh
Confidence 344556666677777777555444333 34556777777777765433
No 33
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.83 E-value=6.1 Score=36.82 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=58.8
Q ss_pred cccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-Chhh-HHHHHHHHHHHHHHHh--hcCCcchhhHHHHHH
Q 009811 34 HRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-GNEF-VTEFWKVLPAALKDVV--ENGDDSGKNVVSRLV 109 (525)
Q Consensus 34 h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g~eF-~~aF~~vLp~a~~~v~--~~~d~~~kkkV~Rll 109 (525)
....++..+..+.++|..-+...-|.-|-|+.-+++||-.+ ..++ ...|-.-|..++..-| ...+..++++|..+|
T Consensus 32 ~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 32 EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 33457888999999998666666677789999999998543 2222 1233322333332222 124678999999999
Q ss_pred HHhhhccccchh--hHHHHHHh
Q 009811 110 NIWDERRVFGSR--ARGVKDVM 129 (525)
Q Consensus 110 ~IWeeR~VF~~~--i~~Lke~l 129 (525)
..|.+ -|..+ +....+.|
T Consensus 112 ~~W~~--~f~~~p~~~~~Y~~L 131 (139)
T cd03567 112 YSWTL--ELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHH--HhcccchHHHHHHHH
Confidence 99995 35432 44444443
No 34
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=80.76 E-value=18 Score=38.76 Aligned_cols=10 Identities=50% Similarity=0.654 Sum_probs=4.3
Q ss_pred CccCCCCCCC
Q 009811 428 PQYHMLPNSS 437 (525)
Q Consensus 428 ~~~~~~~~~~ 437 (525)
|+..+|-|||
T Consensus 264 P~~t~~G~pP 273 (498)
T KOG4849|consen 264 PQQTMLGNPP 273 (498)
T ss_pred CccccCCCCC
Confidence 3444444433
No 35
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.07 E-value=61 Score=30.94 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 255 KEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 255 keAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
++..+..+..++..+..++...........+++||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 191 (191)
T PF04156_consen 157 REEVQELRSQLERLQENLQQLEEKIQELQELLEQL 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344444444444444444445555555555553
No 36
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.58 E-value=1.7e+02 Score=35.81 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 009811 272 MQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 272 ~q~aq~~~~ra~~lr~~Ld 290 (525)
...++..++.+..++++|.
T Consensus 634 ~~~y~~~~e~l~~~~~~l~ 652 (1049)
T KOG0307|consen 634 PTSYQDLAEDLMELTLKLA 652 (1049)
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 3344555666666666664
No 37
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=78.07 E-value=1.1e+02 Score=36.45 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=41.7
Q ss_pred cCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchhhHHHHHH
Q 009811 51 SSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDV 128 (525)
Q Consensus 51 ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~i~~Lke~ 128 (525)
++++++-+.|+--+|+.|-.++=+...|.. |.||.--=+.+|. .+...++.++++-|--|+-|.+++..++.+
T Consensus 770 ksDPe~m~~lv~kVn~WLv~sRWkk~q~~a--~sVIKLkNkI~yR---ae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 770 KSDPETMLELVAKVNKWLVRSRWKKSQYGA--LSVIKLKNKIIYR---AECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred hcCHHHHHHHHHHHHHHHHHhHHHHhhhhh--hheeehhhHHHHH---HHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 456666677777777777666632222211 1111100011121 244567899999999999999987666543
No 38
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.00 E-value=1.9e+02 Score=36.03 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=12.6
Q ss_pred cccHHHHHHhhhhHHHHHHHhhhh
Q 009811 183 QLSEEEEMARCKSVVHRVKKMEKD 206 (525)
Q Consensus 183 ~~~e~~~l~k~ksav~~~~~~eK~ 206 (525)
..+.|+.|...+--+.+.+.|.-+
T Consensus 1527 L~nVd~IL~~T~~di~ra~~L~s~ 1550 (1758)
T KOG0994|consen 1527 LPNVDAILSRTKGDIARAENLQSE 1550 (1758)
T ss_pred cccHHHHHHhhhhhHHHHHHHHHH
Confidence 345555666555555555554433
No 39
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.70 E-value=16 Score=34.20 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-C-----hhhHHHHHHHHHHHHHHHhhc
Q 009811 23 CIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-G-----NEFVTEFWKVLPAALKDVVEN 96 (525)
Q Consensus 23 SIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g-----~eF~~aF~~vLp~a~~~v~~~ 96 (525)
.|-.+..-+-.....++..+..+.++|...+.+.-+.-|-|+.-+++||-.. . .+|.+++.+.+ -..
T Consensus 20 ~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~-------~~~ 92 (144)
T cd03568 20 LILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLI-------NDR 92 (144)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHh-------ccc
Confidence 4444444444555678999999999998777766677788888888887643 1 23444433222 222
Q ss_pred CCcchhhHHHHHHHHhhhccccchh---hHHHHHHhc
Q 009811 97 GDDSGKNVVSRLVNIWDERRVFGSR---ARGVKDVML 130 (525)
Q Consensus 97 ~d~~~kkkV~Rll~IWeeR~VF~~~---i~~Lke~ll 130 (525)
.+..++.++..+|.-|.+.-=-+++ |..+.+.|.
T Consensus 93 ~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 93 VHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLK 129 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 5788999999999999843222222 355555554
No 40
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.50 E-value=19 Score=36.47 Aligned_cols=60 Identities=22% Similarity=0.401 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEAC 283 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~ 283 (525)
.|+.+++..|..+.+.|.+....-..|...+++-|..|+.++...+..++.|...+.++.
T Consensus 153 ~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~ 212 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAE 212 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444444444455555555555555555555555555554444443
No 41
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=76.20 E-value=92 Score=31.48 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=67.2
Q ss_pred hhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 194 KSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQ 273 (525)
Q Consensus 194 ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q 273 (525)
......++++++....+...+ ...|+++.-+....+.+.++.++..+..-...+..|+..+...+.++..++.++.
T Consensus 62 ~~~~~~~~k~e~~A~~Al~~g----~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 62 EEAQARAEKLEEKAELALQAG----NEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777766655444 4789999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 009811 274 VAQAQAE 280 (525)
Q Consensus 274 ~aq~~~~ 280 (525)
.+.+..+
T Consensus 138 ~l~ar~~ 144 (225)
T COG1842 138 ALKARKA 144 (225)
T ss_pred HHHHHHH
Confidence 7755544
No 42
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.69 E-value=84 Score=30.80 Aligned_cols=88 Identities=27% Similarity=0.406 Sum_probs=62.8
Q ss_pred HHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQ 278 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~ 278 (525)
.++++++....+...+ ...|+++.-.....+..-++.|+.....-..-+..|+..+...+.+++..+.......+.
T Consensus 66 ~~~~~~~~A~~Al~~g----~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 66 EAEKWEKQAELALAAG----REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443333 457777777777778888888888888888888899999999999999999888877776
Q ss_pred HHHHHHHHHhhcc
Q 009811 279 AEEACNMRKRLND 291 (525)
Q Consensus 279 ~~ra~~lr~~Ld~ 291 (525)
.+.+ ..++++.+
T Consensus 142 ~~~a-~a~~~~~~ 153 (221)
T PF04012_consen 142 ENAA-KAQKKVNE 153 (221)
T ss_pred HHHH-HHHHHHHH
Confidence 6643 34444443
No 43
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=74.93 E-value=59 Score=35.10 Aligned_cols=6 Identities=50% Similarity=0.739 Sum_probs=2.4
Q ss_pred HHHHHH
Q 009811 233 LKQCIE 238 (525)
Q Consensus 233 lke~Ie 238 (525)
.|+.++
T Consensus 137 ~Kq~Me 142 (498)
T KOG4849|consen 137 VKQTME 142 (498)
T ss_pred HHHHHH
Confidence 334444
No 44
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=73.16 E-value=76 Score=29.09 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=50.5
Q ss_pred HhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 191 ARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRT 270 (525)
Q Consensus 191 ~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~ 270 (525)
..|+..++.+..+.+-|+..+.. ...++++.+.+.-+.=..-..|++....|..-...|...+.+...+||.++.
T Consensus 27 ~ec~~F~~ki~~F~~iv~~~~~~-----~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~ 101 (120)
T PF14931_consen 27 EECKEFVEKISEFQKIVKGFIEI-----LDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRS 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888888888877777654322 3556666666665555556666666666666666666666666666666665
Q ss_pred HHHH
Q 009811 271 QMQV 274 (525)
Q Consensus 271 ~~q~ 274 (525)
..+.
T Consensus 102 E~~s 105 (120)
T PF14931_consen 102 EYES 105 (120)
T ss_pred HHHH
Confidence 5443
No 45
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.95 E-value=45 Score=30.87 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
...+.+.|....+.|..-|+.|....+.-.++...+++-..+....++.++...+.++..+.
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34567777777788888888777777777777777777777666666666665555444333
No 46
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=71.40 E-value=1.1e+02 Score=30.29 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=58.4
Q ss_pred HHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 200 VKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQA 279 (525)
Q Consensus 200 ~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~ 279 (525)
++++++....|...+ ...|+++.-+......+.+..|+.....-...+..|+.-|...+.+++.+++......+..
T Consensus 68 ~~~~~~~A~~Al~~G----~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 68 VADWQEKAELALSKG----REDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444343333 4678887777778888888888888888888999999999999999999998877555555
Q ss_pred HHHH
Q 009811 280 EEAC 283 (525)
Q Consensus 280 ~ra~ 283 (525)
+.+.
T Consensus 144 ~~A~ 147 (219)
T TIGR02977 144 QAAS 147 (219)
T ss_pred HHHH
Confidence 4443
No 47
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=71.01 E-value=42 Score=36.67 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES-----ELENVRTQMQVAQAQAEEACNMR 286 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~-----~lE~vr~~~q~aq~~~~ra~~lr 286 (525)
..-+...|+|..-+....-+++.........-|..||+.|..-|+ -+|..|..|.+.+++-+|+..|-
T Consensus 246 ~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 246 YQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466777888888888888899999999999999999999988876 45778888888899999998887
No 48
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.74 E-value=79 Score=31.76 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
+.+++-..+++.++++++....+..-+..+++.|...+.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 49
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.77 E-value=59 Score=32.97 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009811 234 KQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKR 288 (525)
Q Consensus 234 ke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~ 288 (525)
...++.|.-+-.+...|-+.++++-.+.+...+.+.....++.-.-+++..+|+.
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555556666666666666666666777777788888877
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.66 E-value=1.6e+02 Score=31.25 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 235 QCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 235 e~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
+-+..+..........++.+++-|.+.+...+.........+..++.+...+++-
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333334444445555555666666666666666666555555555555544443
No 51
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=69.51 E-value=23 Score=31.75 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=62.4
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHHhcccchHHHHHHHHHHH---hcCCcCcccchhhhhHHHHHHhhhcChhhHH
Q 009811 10 LAEKLSKLNC------TQQCIETLSHWCIFHRSKAELVVATWDKQF---HSSQLVQKVPLLYLANDILQNSKRKGNEFVT 80 (525)
Q Consensus 10 l~~kL~~Ln~------SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l---~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~ 80 (525)
++.++...++ +..-...++.++.+. ..+..|+++..++| ......+++--|.|+..++.|+. .+|+.
T Consensus 4 ~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~---~~~~~ 79 (125)
T PF01417_consen 4 LELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS---ERFVD 79 (125)
T ss_dssp HHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC---HHHHH
Confidence 4455555553 345567777877666 88999999999998 34455567778888888887722 47888
Q ss_pred HHHHHHHHHHH--HHh---hcCCcc---hhhHHHHHHHHhh
Q 009811 81 EFWKVLPAALK--DVV---ENGDDS---GKNVVSRLVNIWD 113 (525)
Q Consensus 81 aF~~vLp~a~~--~v~---~~~d~~---~kkkV~Rll~IWe 113 (525)
.|...+..+-. .+. ..|++. +|++...|+++-.
T Consensus 80 ~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 80 ELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 88665443322 111 112222 5777777776543
No 52
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=69.21 E-value=1.8e+02 Score=31.78 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=64.5
Q ss_pred CchhhhHHHHHHHhhhccc----HHHHHHhhhhHHHHHH-------HhhhhhhhhhcCCCCcc-hhHHHHHHHHHHHHHH
Q 009811 167 GAAEKIVSAYHLVLCEQLS----EEEEMARCKSVVHRVK-------KMEKDVDIACTNAKDPK-RKTLSKELEEEENMLK 234 (525)
Q Consensus 167 ~~~ekivsa~q~l~~~~~~----e~~~l~k~ksav~~~~-------~~eK~vd~acs~~~d~r-~~~l~keLee~e~~lk 234 (525)
...+.|+..++.+..+-.+ ...-.-+|..+++..+ ++...++. ..+|.. +...++||++.-..+.
T Consensus 192 ~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~V---l~~Da~El~~V~~el~~~~~~~~ 268 (412)
T PF04108_consen 192 PLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEV---LENDAQELPDVVKELQERLDEME 268 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHH---HHcchhhHHHHHHHHHHHHHHHH
Confidence 3567777777765532111 1111234888877431 11112211 112443 6677777777777777
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 235 QCIEK----LKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRK 287 (525)
Q Consensus 235 e~Ieq----Le~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~ 287 (525)
...+. |......-..+...+.+++...+.-.+.+...+...+.|.++....+.
T Consensus 269 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~ 325 (412)
T PF04108_consen 269 NNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKE 325 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 666666666666666766666655555555555555555555444433
No 53
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=68.86 E-value=32 Score=37.80 Aligned_cols=17 Identities=53% Similarity=0.942 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCcc
Q 009811 461 PAGPPPPHMVSPMVPLT 477 (525)
Q Consensus 461 pp~p~~p~~~~~~~~~~ 477 (525)
|||||+.-|.+||++.+
T Consensus 335 ppPpp~~~~~sp~~ppp 351 (518)
T KOG1830|consen 335 PPPPPPLLMNSPIVPPP 351 (518)
T ss_pred CCCCCcccccCCCCCCC
Confidence 34444447777777654
No 54
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=68.26 E-value=27 Score=39.02 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=11.0
Q ss_pred chhhhhHHHHHHhhhc
Q 009811 59 PLLYLANDILQNSKRK 74 (525)
Q Consensus 59 ~lLYLaNDVlQnSkrK 74 (525)
...|++|-+|+--.||
T Consensus 52 ~~~y~l~~~iee~t~k 67 (554)
T KOG0119|consen 52 KESYSLNLRIEEITRK 67 (554)
T ss_pred hhhhhHHHHHHHhhhh
Confidence 3467888777776654
No 55
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.19 E-value=40 Score=39.57 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhc
Q 009811 276 QAQAEEACNMRKRLN 290 (525)
Q Consensus 276 q~~~~ra~~lr~~Ld 290 (525)
+...+++.+++.|++
T Consensus 649 ~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 649 QDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 56
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=66.10 E-value=70 Score=25.93 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=41.4
Q ss_pred HHHHhhhhhhhhhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPK-RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQA 277 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r-~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~ 277 (525)
-+...+..+..... +.+.. ...++++++....-+...-..++.+......|++.-...-.....+++.+...|..
T Consensus 16 Wl~~~e~~l~~~~~-~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~--- 91 (105)
T PF00435_consen 16 WLQETEAKLSSSEP-GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEA--- 91 (105)
T ss_dssp HHHHHHHHHCSCTH-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---
Confidence 34444555532222 22332 45555556555555555555555555555555443333334445555555555543
Q ss_pred HHHHHHHHHHhh
Q 009811 278 QAEEACNMRKRL 289 (525)
Q Consensus 278 ~~~ra~~lr~~L 289 (525)
+.+.+...+.+|
T Consensus 92 l~~~~~~r~~~L 103 (105)
T PF00435_consen 92 LCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
Confidence 334444444444
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.65 E-value=85 Score=38.17 Aligned_cols=64 Identities=30% Similarity=0.416 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEA 282 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra 282 (525)
...+.+++++.+..+++....++++.+.-..|-..++++-.+.|..++.....++.+...++..
T Consensus 743 ~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~ 806 (1174)
T KOG0933|consen 743 LKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEES 806 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888888888888887777777666666666555555433
No 58
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=65.53 E-value=70 Score=34.89 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 009811 245 ASRVALVSQLKEALHEQESELENVRTQMQVA-QAQAEEACNMRKRL 289 (525)
Q Consensus 245 ~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~a-q~~~~ra~~lr~~L 289 (525)
.....-+..+-++|++.+-.++++..++++. +.+-|+.-+|++.|
T Consensus 288 e~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqEl 333 (455)
T KOG3850|consen 288 EQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQEL 333 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444455556666665666665555554 45555555555554
No 59
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.66 E-value=1.5e+02 Score=30.01 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=52.2
Q ss_pred HHHHHHhhhhHHHHHHHh-hhhhhhhhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 009811 186 EEEEMARCKSVVHRVKKM-EKDVDIACTNAKD--PKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQ- 261 (525)
Q Consensus 186 e~~~l~k~ksav~~~~~~-eK~vd~acs~~~d--~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q- 261 (525)
-+.++..+...+++|.+. .+-.++.-...+. ...+.|..+|.+....+++..+....+.. |-...+..|+..
T Consensus 151 Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~----ln~~n~~~l~~~~ 226 (264)
T PF06008_consen 151 AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAED----LNRANQKNLEDLE 226 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 334455555556665542 3333321111000 11456666777777777776666554433 222333333333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 262 ------ESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 262 ------E~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
++....+...+..++...+++..+-..+++
T Consensus 227 ~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~~~~~ 262 (264)
T PF06008_consen 227 KKKQELSEQQNEVSETLKEAEDLLDQANDLLQEMQD 262 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455555566666777777777666654
No 60
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=64.51 E-value=1.2e+02 Score=30.53 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQA-QAEEACNMRKRLN 290 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~-~~~ra~~lr~~Ld 290 (525)
+|+..+--+-.+..+++++......+...|+.|-..+++..|.+...++++.. .++.+++|..=++
T Consensus 122 kLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~ 188 (215)
T cd07593 122 KLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLD 188 (215)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34443333444444444443333456677788888888888888888877765 5777777776554
No 61
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.22 E-value=88 Score=26.41 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEA 282 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra 282 (525)
.+++.++.++..-++++.....-..++...++.++....+.+.+......++...+.+
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444444444444443333333
No 62
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=63.81 E-value=1.7e+02 Score=29.59 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 009811 252 SQLKEALHEQESELENVRTQMQVAQAQ-AEEACNMRKRLN 290 (525)
Q Consensus 252 s~LkeAL~~qE~~lE~vr~~~q~aq~~-~~ra~~lr~~Ld 290 (525)
+.|+.|....++..|..+..++++..- ++++++|+.=++
T Consensus 161 ~elr~A~~kf~~~~E~a~~~M~~il~~~~e~l~~L~~lv~ 200 (220)
T cd07617 161 HELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVE 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 466777777777777666666655444 677777665443
No 63
>PRK10698 phage shock protein PspA; Provisional
Probab=63.56 E-value=1.7e+02 Score=29.37 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEAC 283 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~ 283 (525)
...|+++-=.......+-+..|+.........++.|++.+...+.+++..++......+..+.+.
T Consensus 83 ~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 83 KEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777775566666677777788888888888888888888888888888887766655555544
No 64
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.27 E-value=79 Score=31.88 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=34.3
Q ss_pred hhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 194 KSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESEL 265 (525)
Q Consensus 194 ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~l 265 (525)
+.+.+.++.+++.+..... . .....+...+++..+..++.-...||+.......|..+.++.+.+|.-.+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~-~-~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK-L-EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHhhhcccc-h-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 4455556666666553111 0 01123444455555555555555555555555555555555555554433
No 65
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=62.76 E-value=1.9e+02 Score=33.09 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=20.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 009811 325 AEVADKLTASTSSQMIMHSVLSTFAAQEAK 354 (525)
Q Consensus 325 a~va~klaassss~~~l~svlss~aae~a~ 354 (525)
+.|=+--+..+.--|+|==+=-+|=+|=|+
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDAEIAA 381 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHhHHHH
Confidence 344455666777777777777788888776
No 66
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.41 E-value=71 Score=33.70 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 251 VSQLKEALHEQESELENVRTQMQVAQ 276 (525)
Q Consensus 251 is~LkeAL~~qE~~lE~vr~~~q~aq 276 (525)
.+.+...+.+.+++++.+.++...+.
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 67
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.19 E-value=2.1e+02 Score=33.72 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
.+..+.+.+...+.+|.+..+.....-..|-+.++++.+.||...++++.+
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444433
No 68
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=60.09 E-value=1.2e+02 Score=31.12 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=54.4
Q ss_pred HHHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 188 EEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 188 ~~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
.+|.+.+.+.+.|.+||+++|.+...- ..-...+..+|....+.|-.||++=.=.+.+|...-.. +...+.-...+|.
T Consensus 11 ~eLe~LN~atd~IN~lE~~L~~ar~~f-r~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~a-q~e~q~Aa~~yer 88 (239)
T PF05276_consen 11 EELEKLNQATDEINRLENELDEARATF-RRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEA-QQEAQKAALQYER 88 (239)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 368888899999999999999865431 11146667777777777778887655555555533322 2222233334444
Q ss_pred HHHHHHHHHHHHH
Q 009811 268 VRTQMQVAQAQAE 280 (525)
Q Consensus 268 vr~~~q~aq~~~~ 280 (525)
......+|+-.+.
T Consensus 89 A~~~h~aAKe~v~ 101 (239)
T PF05276_consen 89 ANSMHAAAKEMVA 101 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 69
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=59.40 E-value=1.7e+02 Score=32.56 Aligned_cols=12 Identities=50% Similarity=0.310 Sum_probs=6.3
Q ss_pred hhhhHHHHHHhh
Q 009811 61 LYLANDILQNSK 72 (525)
Q Consensus 61 LYLaNDVlQnSk 72 (525)
+-|||=|=|-|.
T Consensus 32 ~TLaniIRQLsS 43 (518)
T KOG1830|consen 32 ITLANIIRQLSS 43 (518)
T ss_pred hHHHHHHHHHHH
Confidence 445555555543
No 70
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=59.14 E-value=73 Score=32.76 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=3.1
Q ss_pred CCCccccC
Q 009811 407 QSYQTVLV 414 (525)
Q Consensus 407 ~~~~~~~~ 414 (525)
-+|+..+.
T Consensus 138 ~~~gmpp~ 145 (341)
T KOG2893|consen 138 MAYGMPPM 145 (341)
T ss_pred cccCCCCC
Confidence 33443333
No 71
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.13 E-value=1.5e+02 Score=31.21 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 246 SRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRK 287 (525)
Q Consensus 246 aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~ 287 (525)
.+...+..|+.-+...+...+....+.+..+..++++...+.
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555444444
No 72
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.97 E-value=31 Score=38.23 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=5.0
Q ss_pred CCCCcccCC
Q 009811 437 SSQQYLQPS 445 (525)
Q Consensus 437 ~~~q~~q~~ 445 (525)
+..+|.|..
T Consensus 438 p~~~~g~~~ 446 (483)
T KOG2236|consen 438 PPANFGQAN 446 (483)
T ss_pred CcccccccC
Confidence 335666666
No 73
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=58.15 E-value=1.7e+02 Score=33.64 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASR 247 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR 247 (525)
...+.+++++.+..+..+...++......
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~ 451 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQL 451 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555554433333
No 74
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=58.05 E-value=1.5e+02 Score=29.95 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc
Q 009811 249 ALVSQLKEALHEQESELENVRTQMQVAQA-QAEEACNMRKRLN 290 (525)
Q Consensus 249 ~Lis~LkeAL~~qE~~lE~vr~~~q~aq~-~~~ra~~lr~~Ld 290 (525)
.+...|+.|..+++...|..+..++++.. .++++++|+.=++
T Consensus 167 ~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~lv~ 209 (229)
T cd07594 167 QAEQDLRVAQSEFDRQAEITKLLLEGISSTHANHLRCLRDFVE 209 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 34556777777777777777777777655 5777777766543
No 75
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=57.79 E-value=1.2e+02 Score=31.79 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 230 ENMLKQCIEKLKSVEASRVALVS-------QLKEA-LHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis-------~LkeA-L~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
+..++..++.|++...+-..|.+ ..-.+ |.+|+.--+--+..++.++.|..|++.-|++.-..
T Consensus 53 ~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~erg~~F~~~~~~sR~~IA~l 123 (313)
T KOG1466|consen 53 ENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLLERGELFIERARKSRQKIAML 123 (313)
T ss_pred HHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333332 33444 77787777777778899999999999999998544
No 76
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.18 E-value=2.2e+02 Score=32.07 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 238 EKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 238 eqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
+++|....-|++|-..|...-.+-+...+.|+.+.-.|++.++.+..+-+++++.
T Consensus 368 e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl 422 (622)
T COG5185 368 EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSL 422 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566678888888888888888899999999999999999988888888765
No 77
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.09 E-value=2.2e+02 Score=34.88 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 218 KRKTLSKELEEEENMLKQCIEKLKSVEASRVALV 251 (525)
Q Consensus 218 r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Li 251 (525)
+.+.+.++|+...+.+.+.-..+|+.+..++.|.
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~ 821 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQ 821 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887777777777776664
No 78
>PRK11637 AmiB activator; Provisional
Probab=56.34 E-value=2.7e+02 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 236 CIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQV 274 (525)
Q Consensus 236 ~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~ 274 (525)
-...|+.....+..++..|+.-+..++.+++..+...+.
T Consensus 206 ~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~ 244 (428)
T PRK11637 206 QQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESR 244 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555555555444444333
No 79
>PRK02224 chromosome segregation protein; Provisional
Probab=55.40 E-value=2e+02 Score=34.10 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLK 255 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~Lk 255 (525)
...+..+++..+..+..+.+.|+.....+..|...|.
T Consensus 648 ~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~ 684 (880)
T PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655555555555443
No 80
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=55.32 E-value=95 Score=34.96 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=5.9
Q ss_pred HHhhhhHHHHHHH
Q 009811 190 MARCKSVVHRVKK 202 (525)
Q Consensus 190 l~k~ksav~~~~~ 202 (525)
.+|.+.|+..|++
T Consensus 214 ~eki~~Ai~vien 226 (554)
T KOG0119|consen 214 QEKIKKAIAVIEN 226 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445444443
No 81
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.95 E-value=2.7e+02 Score=30.63 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhccc
Q 009811 238 EKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQA-----QAEEACNMRKRLNDE 292 (525)
Q Consensus 238 eqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~-----~~~ra~~lr~~Ld~~ 292 (525)
+.|....-.++.|-++|.+.++-+-.+...++..+...+. -.+|++++-+-|+.+
T Consensus 251 ~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~ 310 (395)
T PF10267_consen 251 EALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESC 310 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333344455556666655555555555555433332 234566665555443
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.68 E-value=2.7e+02 Score=34.70 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=19.7
Q ss_pred HHHHHhc--CCcCcccchhhhhHHHHHHhhh
Q 009811 45 WDKQFHS--SQLVQKVPLLYLANDILQNSKR 73 (525)
Q Consensus 45 W~k~l~k--s~~~kKL~lLYLaNDVlQnSkr 73 (525)
|.+.++. ....++|. .==--+||||.+.
T Consensus 126 ~~r~~~~~gv~~S~~i~-~~eYR~IIqn~~~ 155 (1201)
T PF12128_consen 126 LIRELRRKGVQVSRKIT-TSEYRAIIQNNRS 155 (1201)
T ss_pred HHHHHHhCCCeeecCcC-HHHHHHHHcCCCc
Confidence 4455654 56778888 6667889998764
No 83
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=54.23 E-value=1.7e+02 Score=27.39 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
...+..+++.+...++..-..+ ..+..-|..|.......+.....++.....+.+-..+-.+.-++|.+++
T Consensus 21 ~~~l~~~~~~a~~~~~~~~~~l----~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 21 LRNARADLERANRVLKAQQAEL----ASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455566666555554444433 3556666677777777777777777777777777776666666666654
No 84
>PRK00846 hypothetical protein; Provisional
Probab=54.12 E-value=76 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 235 QCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 235 e~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
+-|+.||.-..--+..|+.|.+++..+....+..+.+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~q 49 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAEL 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455556666655555544444433
No 85
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=54.01 E-value=2.1e+02 Score=27.42 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQA 279 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~ 279 (525)
-++++...-.-+...+..|. -..+|+.||..|++.+++-++..+.++.....|+...
T Consensus 105 ki~~i~~L~~NmhhllNeyR-PhQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 105 KIEDIRLLFINMHHLLNEYR-PHQARETLIMMMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444333344444455543 3468999999999988888888888887776665543
No 86
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=53.70 E-value=2.5e+02 Score=28.25 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------HHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHE--Q-----------------ESELENVRTQMQVAQAQA 279 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~--q-----------------E~~lE~vr~~~q~aq~~~ 279 (525)
++.+-.+....+..+.+++..|+++-..+..++..+++|... + |+.+..+....+++.+.+
T Consensus 106 RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~~v 185 (234)
T cd07652 106 RKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYASKV 185 (234)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666666666666666666666666555432 1 233345555677777888
Q ss_pred HHHHHHHHhhcc
Q 009811 280 EEACNMRKRLND 291 (525)
Q Consensus 280 ~ra~~lr~~Ld~ 291 (525)
+.+...|+.+.+
T Consensus 186 ~~~n~~q~e~~~ 197 (234)
T cd07652 186 NAAQALRQELLS 197 (234)
T ss_pred HHHHHHHHHHHH
Confidence 888888877754
No 87
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=53.44 E-value=77 Score=34.82 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=71.7
Q ss_pred cCCHHHHHHHHHHHHh---cccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc---C---hhhHHHHHHHHHH
Q 009811 18 NCTQQCIETLSHWCIF---HRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK---G---NEFVTEFWKVLPA 88 (525)
Q Consensus 18 n~SQeSIqtlS~W~i~---h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK---g---~eF~~aF~~vLp~ 88 (525)
++|.|.-.-+...|-. ...-++..+..++++|.....+--|-.|-|..-++-||.+. . .+|..+|..++-.
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~ 99 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIES 99 (462)
T ss_pred ccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhh
Confidence 3566665555555543 33568899999999999888888888899999999999742 2 4788887765543
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHhhhccccchh
Q 009811 89 ALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR 121 (525)
Q Consensus 89 a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~ 121 (525)
....+++++|+-|++=|-| .|-.|
T Consensus 100 -------~~h~kV~~k~~~lv~eWse--e~K~D 123 (462)
T KOG2199|consen 100 -------KAHPKVCEKMRDLVKEWSE--EFKKD 123 (462)
T ss_pred -------cccHHHHHHHHHHHHHHHH--HhccC
Confidence 3467889999999999999 78544
No 88
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=53.26 E-value=4.2e+02 Score=30.79 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=43.8
Q ss_pred chhhhHHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCC-------CCcchhHHHHHHHHHHHHHHHHHHHH
Q 009811 168 AAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNA-------KDPKRKTLSKELEEEENMLKQCIEKL 240 (525)
Q Consensus 168 ~~ekivsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~-------~d~r~~~l~keLee~e~~lke~IeqL 240 (525)
..+++...+..+..+..+..+.-.......+++.+++..++...-+. ....+..-.+.|.+.+..+++-++.+
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333334445555555554322110 01124444556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009811 241 KSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 241 e~~~~aR~~Lis~LkeAL~~q 261 (525)
++.+..-...+..-..-|...
T Consensus 202 e~ki~~lq~a~~~t~~el~~~ 222 (629)
T KOG0963|consen 202 EKKISSLQSAIEDTQNELFDL 222 (629)
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 666555544444333333333
No 89
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=53.11 E-value=1.9e+02 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQE 262 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE 262 (525)
.+++..-+...-.+++|++....+..-|..|++-|.+-.
T Consensus 83 ~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445577777777778777777777666543
No 90
>PLN03223 Polycystin cation channel protein; Provisional
Probab=53.07 E-value=2.9e+02 Score=35.11 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
+.+|.+|++...+.+...++ .-.+||++..+..+-|+.+-|+
T Consensus 1573 ~~~l~~e~~~L~~s~erL~~-------~Q~~l~egQ~k~~~~Q~~la~~ 1614 (1634)
T PLN03223 1573 GDVLEKEVDQLQQSLERLAE-------VQRELAEGQVKVIEGQKQMAER 1614 (1634)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHhhhHHHHHHH
Confidence 34566666554444444444 5556666665555555544443
No 91
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=52.62 E-value=1.8e+02 Score=27.87 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMR 286 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr 286 (525)
.+.-+.+...++-.-++++....+-..|.+.|++..+++|.+.++...+++.+++-..++.+=|
T Consensus 77 ~RQ~q~q~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ER 140 (152)
T PF15186_consen 77 ARQRQLQARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKER 140 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777778888888889999999999999999999999999998888887776533
No 92
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.57 E-value=2e+02 Score=34.90 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=33.8
Q ss_pred HHHhhhhhhhhhcCCCCcchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 200 VKKMEKDVDIACTNAKDPKRKTLSK---ELEEEENMLKQCIEKLKSVEASRVALVSQLKE 256 (525)
Q Consensus 200 ~~~~eK~vd~acs~~~d~r~~~l~k---eLee~e~~lke~IeqLe~~~~aR~~Lis~Lke 256 (525)
|..+..+||-+.... .=+.-|.+ +||+.-+.|++.|+.||..+..-+.|++.-++
T Consensus 433 iadlkEQVDAAlGAE--~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~e 490 (1243)
T KOG0971|consen 433 IADLKEQVDAALGAE--EMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRE 490 (1243)
T ss_pred HHHHHHHHHHhhcHH--HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666432211 10222222 78888888999999998887777777664433
No 93
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=52.36 E-value=2.5e+02 Score=33.05 Aligned_cols=62 Identities=27% Similarity=0.327 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
..+...++.+++....-....+.|+..++..+.+++.++.+..+...-.+..+.-++||+++
T Consensus 548 ~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 548 TTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555666777777778888888888777777776666666666544
No 94
>PRK11637 AmiB activator; Provisional
Probab=52.10 E-value=2.3e+02 Score=30.77 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=9.4
Q ss_pred HhccchhHHHHHHHHHHHH
Q 009811 331 LTASTSSQMIMHSVLSTFA 349 (525)
Q Consensus 331 laassss~~~l~svlss~a 349 (525)
|+......+-|...|..+.
T Consensus 235 l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 235 LSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555543
No 95
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.77 E-value=1.7e+02 Score=25.83 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=21.7
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSK-ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 219 ~~~l~k-eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
|..|++ +.+++...+++-++.++. .|..|++.+.+.+.+++..+..+
T Consensus 57 G~vlv~~~~~e~~~~l~~r~e~ie~-------~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 57 GNLLVKTDKEEAIQELKEKKETLEL-------RVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred chhhheecHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 555555555555554432 33344444444444444444443
No 96
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.34 E-value=1.6e+02 Score=29.71 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhc
Q 009811 336 SSQMIMHSVLSTFAAQEAKNA 356 (525)
Q Consensus 336 ss~~~l~svlss~aae~a~~~ 356 (525)
|.+--+.-||..+--|---++
T Consensus 146 ~~~ek~r~vlea~~~E~~yg~ 166 (251)
T PF11932_consen 146 SLAEKFRRVLEAYQIEMEYGR 166 (251)
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 344445667777766655543
No 97
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=51.20 E-value=2.7e+02 Score=32.71 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred CchhhhHHHHHHHhhhcccHHHHHH-hhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009811 167 GAAEKIVSAYHLVLCEQLSEEEEMA-RCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 167 ~~~ekivsa~q~l~~~~~~e~~~l~-k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe 241 (525)
+-.++++.||..|.-.+-++--+|. |.+.....++.+++...--|.. +...+..|+-.+.+-+..+++..-.|+
T Consensus 190 ~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~-kEkqvs~L~~q~~eKen~~kdl~~~l~ 264 (786)
T PF05483_consen 190 ENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVND-KEKQVSLLQTQLKEKENKIKDLLLLLQ 264 (786)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 4689999999987776655555664 6677666665555444432221 112244444444444444444444444
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.01 E-value=4.4e+02 Score=30.35 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=44.8
Q ss_pred HHHHHHHHhcccchHHHHH---HHHHHHhcCCcCcccchhhhhHHHHHHhhhcC----hhhHHHHHHHHHHHHHHHhhcC
Q 009811 25 ETLSHWCIFHRSKAELVVA---TWDKQFHSSQLVQKVPLLYLANDILQNSKRKG----NEFVTEFWKVLPAALKDVVENG 97 (525)
Q Consensus 25 qtlS~W~i~h~k~A~~IV~---~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg----~eF~~aF~~vLp~a~~~v~~~~ 97 (525)
-.+-+|+++.-++...+|. +|-..-...... |+-|=|++-+--.. .+| .++-++|...|-..|..++..
T Consensus 161 L~mlhWlvdlI~~~t~~v~~~~l~q~~~ed~~m~-k~f~dy~~~~Y~~f--l~g~d~~~~~~~Elk~~l~~~~~~i~~~- 236 (581)
T KOG0995|consen 161 LGMLHWLVDLIRINTALVEDSPLEQEEAEDKTMN-KLFFDYTIRSYTSF--LKGEDNSSELEDELKHRLEKYFTSIANE- 236 (581)
T ss_pred HHHHHHHHHHHHHhHHHhhccchhccchHHHHHH-HHHHHHHHHHHHHH--hccCcccchHHHHHHHHHHHHHHHHHHH-
Confidence 3456787765555444444 233222222222 44444555443222 233 356666666666666655431
Q ss_pred CcchhhHHHHHHHHhhhccccchhhHHHH
Q 009811 98 DDSGKNVVSRLVNIWDERRVFGSRARGVK 126 (525)
Q Consensus 98 d~~~kkkV~Rll~IWeeR~VF~~~i~~Lk 126 (525)
-+..++.-+++..--.+|.--+..++.|+
T Consensus 237 ie~l~~~n~~l~e~i~e~ek~~~~~eslr 265 (581)
T KOG0995|consen 237 IEDLKKTNRELEEMINEREKDPGKEESLR 265 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 12334444555544444444333333333
No 99
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.82 E-value=1.8e+02 Score=30.64 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 009811 269 RTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 269 r~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
....+....+.+.+.+-..||..
T Consensus 112 ~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 112 QEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555543
No 100
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=50.55 E-value=49 Score=38.88 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhc
Q 009811 279 AEEACNMRKRLN 290 (525)
Q Consensus 279 ~~ra~~lr~~Ld 290 (525)
.+|....|.++.
T Consensus 229 ~e~~lk~~~~~l 240 (830)
T KOG1923|consen 229 KERSLKAIARLL 240 (830)
T ss_pred HHHHHHHHHHhc
Confidence 344444444443
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=50.13 E-value=2.2e+02 Score=33.64 Aligned_cols=53 Identities=25% Similarity=0.128 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
.+.-++|+..++.++=.-...||..-.+-.+.|+.||.-..++|...-+++..
T Consensus 81 lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl 133 (717)
T PF09730_consen 81 LREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRL 133 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67888899999988888888899999999999999998888886655444444
No 102
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.87 E-value=75 Score=26.04 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
|..|+....--...|+.|.+.+..|..+.+.++.++
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555566666666655555554443
No 103
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=49.79 E-value=1.5e+02 Score=30.40 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 220 KTLSKELEEEENMLKQCIEKLKSVEASRVALVSQ--LKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~--LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
+.|..-+++.+..++++-+ .||.. +|+-|+|.++..-..-+.+.++|..-.+-++++||...
T Consensus 174 seL~~ll~e~E~~Ir~ySE----------eLV~qLA~RDELefEKEvKN~FIS~Ll~VQnrqre~r~~~kkk~k 237 (244)
T PF07763_consen 174 SELNELLEEMETAIREYSE----------ELVQQLALRDELEFEKEVKNTFISLLLEVQNRQREQRELAKKKRK 237 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444445555555554444 34554 47778888887778888888888777777666666543
No 104
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=49.59 E-value=1.1e+02 Score=32.64 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEA 257 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeA 257 (525)
.+.+..++++.....+.|...+++....-..|...|+++
T Consensus 20 hr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 20 HRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888887776666555555555554
No 105
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=48.75 E-value=1.2e+02 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=9.1
Q ss_pred CCCCccCCCCC---CCCCCcccCC
Q 009811 425 STQPQYHMLPN---SSSQQYLQPS 445 (525)
Q Consensus 425 ~~~~~~~~~~~---~~~~q~~q~~ 445 (525)
+.|+-++.|+. -++++|+-.+
T Consensus 285 p~q~~~p~y~~~~~~s~~h~~~~~ 308 (389)
T KOG2932|consen 285 PQQFGFPSYPTTESGSSQHFFNGA 308 (389)
T ss_pred CCCCCCCcCCccccccccccccCC
Confidence 33333455544 2235555433
No 106
>PLN02372 violaxanthin de-epoxidase
Probab=48.43 E-value=3.2e+02 Score=30.34 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009811 220 KTLSKELEEEENMLKQCIEKLKS 242 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~ 242 (525)
+.+++|....+..+..-++.+++
T Consensus 375 ~~i~~e~~~~~~e~~~~v~~~~~ 397 (455)
T PLN02372 375 KTIVKEARQIEEELEKEVEKLGK 397 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544444444444444443
No 107
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.40 E-value=4e+02 Score=31.73 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEAL 258 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL 258 (525)
.+.++++|++.+..+.+-.+.++......+++...|++.+
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~ 557 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKK 557 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444444444443333333333333
No 108
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=48.34 E-value=2.9e+02 Score=27.44 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=50.3
Q ss_pred hHHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 009811 172 IVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKL--KSVEASRVA 249 (525)
Q Consensus 172 ivsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqL--e~~~~aR~~ 249 (525)
....|.-++.... ..+.-.+.++.++++.++.++.. ...........+..+.....++.=|..+ +++.+-+..
T Consensus 99 ~L~eY~gll~~~p---di~~~~k~al~K~kE~~r~~~eg--k~~~~e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~ 173 (199)
T cd07626 99 GLHEYKGLLSTFP---DIIGVHKGAVQKVKECERLVDEG--KMSSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSM 173 (199)
T ss_pred HHHHHHhHHHhhh---HHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444322 23444556666666666666541 0000012334445555555555555544 334555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 250 LVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 250 Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
+++.|++.+++|+.-.+.++..+
T Consensus 174 m~~yLe~qI~fyqqI~~kl~~a~ 196 (199)
T cd07626 174 MRNYLQQQIEFYQKIAAKLEEAL 196 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888876665555443
No 109
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=48.32 E-value=2.4e+02 Score=31.30 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQV 274 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~ 274 (525)
-..+.+|+++...-=+..+.+|+..++.+..|-..|++.-..-+...++....|.+
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555555555556666666666666555555444444444444444433
No 110
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.30 E-value=2.2e+02 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLK 241 (525)
Q Consensus 225 eLee~e~~lke~IeqLe 241 (525)
++++.-...++.+..|+
T Consensus 122 ~l~~~~~~~~~~~~~L~ 138 (206)
T PRK10884 122 EMQQKVAQSDSVINGLK 138 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444455444
No 111
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.20 E-value=2e+02 Score=31.03 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
+++++.+|+.++ .+|+.....+..+...|.++-+.|++.-+.|...-+.-....+++.+++++|++..
T Consensus 254 lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 254 LEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444443 35555555566666677777777777777777666666677778888888888764
No 112
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=48.08 E-value=76 Score=35.46 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHhhc
Q 009811 3 SVFSEQILAEKLSKL 17 (525)
Q Consensus 3 ~~Fsed~l~~kL~~L 17 (525)
...+|+.|...++..
T Consensus 10 ~~vte~~L~~~F~~~ 24 (562)
T TIGR01628 10 PDVTEAKLYDLFKPF 24 (562)
T ss_pred CCCCHHHHHHHHHhc
Confidence 356677777776654
No 113
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.19 E-value=3.6e+02 Score=28.19 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 260 EQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 260 ~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
+.|.+|++-..++..++..-++++.||+.|
T Consensus 151 fLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 151 FLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777778888888777
No 114
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.15 E-value=1.8e+02 Score=33.00 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhc
Q 009811 236 CIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVA----QAQAEEACNMRKRLN 290 (525)
Q Consensus 236 ~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~a----q~~~~ra~~lr~~Ld 290 (525)
...+|+..+..|..+.+.|+.+.......-|+..+....| ....+++.+|.++|.
T Consensus 446 L~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~ 504 (518)
T PF10212_consen 446 LQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLA 504 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666676777766666655555544444444 455678888888884
No 115
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.86 E-value=4.4e+02 Score=32.47 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 009811 281 EACNMRKRL 289 (525)
Q Consensus 281 ra~~lr~~L 289 (525)
+-.+||.+|
T Consensus 585 ~~~elc~~L 593 (1049)
T KOG0307|consen 585 EFSELCDML 593 (1049)
T ss_pred hHHHHHHHH
Confidence 334444443
No 116
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.68 E-value=2.2e+02 Score=29.67 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEA----LHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeA----L~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
.+.+++.-+..|..-|++-+...+.-.+=+..|+.. +.+||..-++++.+.+.|-...-++.-|..+|++.
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444555555544443333333333333332 66777777777777777766666677777777654
No 117
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=46.66 E-value=2.3e+02 Score=25.90 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=30.7
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSK-ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 219 ~~~l~k-eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
|.+|++ +|+++...+..-++.+.+..+..+.-|..+.+-+..+++
T Consensus 59 GpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~ 104 (120)
T KOG3478|consen 59 GPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQRE 104 (120)
T ss_pred cchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 899999999888888887777666555555444444433
No 118
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=46.38 E-value=1.8e+02 Score=27.50 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQ 276 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq 276 (525)
++++++...++.-++.|++ .+..|+++|.+.......+...++.+.
T Consensus 90 ~~~~eAie~l~k~~~~l~~-------~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 90 KSADEAIEFLKKRIEELEK-------AIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred ecHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666653 344556666665555555555555543
No 119
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.22 E-value=2.4e+02 Score=34.51 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
..+++.-..+-..+++-++++.-...|......|++....-++..+++...+-.+....+....+++||
T Consensus 297 ~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl 365 (1200)
T KOG0964|consen 297 KISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRL 365 (1200)
T ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 344444444444555555555555566655555555555555555555555555555555444444444
No 120
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.79 E-value=4.8e+02 Score=29.32 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=52.4
Q ss_pred HHHHHHhhcc---CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHhcCCcCcc--cchhhhhHHHHHHhhhcC-hhhHHH
Q 009811 9 ILAEKLSKLN---CTQQCIETLSHWCIFHRS-KAELVVATWDKQFHSSQLVQK--VPLLYLANDILQNSKRKG-NEFVTE 81 (525)
Q Consensus 9 ~l~~kL~~Ln---~SQeSIqtlS~W~i~h~k-~A~~IV~~W~k~l~ks~~~kK--L~lLYLaNDVlQnSkrKg-~eF~~a 81 (525)
.|+-.|.+-+ +.++-|..+-.+|-.-.+ -+......|+-.=+-.+.... |-.|- ||..|-+++ ..|-++
T Consensus 8 sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~alt----vLe~cmkncGekfH~e 83 (594)
T KOG1086|consen 8 SLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALT----VLEYCMKNCGEKFHEE 83 (594)
T ss_pred cHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHH----HHHHHHHhhhHHHHHH
Confidence 4455555444 467778887777777444 233333344322121222222 33233 444444442 334333
Q ss_pred HHH--HHHHHHHHHhh--cC---CcchhhHHHHHHHHhhh
Q 009811 82 FWK--VLPAALKDVVE--NG---DDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 82 F~~--vLp~a~~~v~~--~~---d~~~kkkV~Rll~IWee 114 (525)
.++ +|-+.++.+.. .| .+++|.+|..||=+|.=
T Consensus 84 vgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv 123 (594)
T KOG1086|consen 84 VGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTV 123 (594)
T ss_pred HHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhhee
Confidence 332 45555555432 22 47889999999999973
No 121
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=45.71 E-value=2.9e+02 Score=27.49 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHhhhhhhhhhcCCCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPKR---KTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVA 275 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r~---~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~a 275 (525)
.+++..+..+.+|....+.+. ..--++++-.+..++.+...+......+...|..|++.-..++.....+=..+|+-
T Consensus 122 ~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~l 201 (236)
T cd07651 122 YLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDL 201 (236)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556643321110 00114555555666666666666666677777777666666655554444444332
Q ss_pred HHHHHHHHHHHHhh
Q 009811 276 QAQAEEACNMRKRL 289 (525)
Q Consensus 276 q~~~~ra~~lr~~L 289 (525)
.-+|+..|+.-|
T Consensus 202 --Ee~Ri~~lk~~l 213 (236)
T cd07651 202 --EEERIQFLKSNC 213 (236)
T ss_pred --HHHHHHHHHHHH
Confidence 223444444433
No 122
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.65 E-value=2e+02 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 255 KEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 255 keAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
+++|+..-.+++..+..|+ +|++.|.-+|++
T Consensus 48 r~~L~~en~qLk~E~~~Wq------erLr~LLGkm~~ 78 (79)
T PRK15422 48 REELERENNHLKEQQNGWQ------ERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHhhcc
Confidence 4455555566666666664 588888888775
No 123
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=45.61 E-value=1.1e+02 Score=26.40 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
..+..|++.|| .....|...|++.|+..++.+.+.+.+.
T Consensus 36 D~Lns~LD~LE---~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 36 DQLNSCLDHLE---QRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555544 4566777888888888877766665544
No 124
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=44.85 E-value=2.4e+02 Score=26.47 Aligned_cols=12 Identities=0% Similarity=0.285 Sum_probs=6.0
Q ss_pred HHHhhhhHHHHH
Q 009811 189 EMARCKSVVHRV 200 (525)
Q Consensus 189 ~l~k~ksav~~~ 200 (525)
.+.+|..+...+
T Consensus 93 ~l~~~~~~~~~i 104 (229)
T PF03114_consen 93 ALEKFGEAMQEI 104 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 125
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=44.84 E-value=1e+02 Score=28.61 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcC-CcCcccchhhhhHHHHHHhhhc-Chhh-HHHHHHH-HHHHHHHHhhcC
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQFHSS-QLVQKVPLLYLANDILQNSKRK-GNEF-VTEFWKV-LPAALKDVVENG 97 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks-~~~kKL~lLYLaNDVlQnSkrK-g~eF-~~aF~~v-Lp~a~~~v~~~~ 97 (525)
+.|-.+..-|-.....++..+..+.++|... +...-+.-|-|+.-+++||-.+ ..++ .++|-.- |..++..- ...
T Consensus 20 ~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~-~~~ 98 (141)
T cd03565 20 GLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK-NNP 98 (141)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc-CCC
Confidence 4455555555555557899999999999642 3333344588888899888532 2111 1222221 33332210 112
Q ss_pred CcchhhHHHHHHHHhhh
Q 009811 98 DDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 98 d~~~kkkV~Rll~IWee 114 (525)
+..+++++..+|.-|.+
T Consensus 99 ~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 99 PTIVQEKVLALIQAWAD 115 (141)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45789999999999995
No 126
>PRK00295 hypothetical protein; Provisional
Probab=44.49 E-value=1.5e+02 Score=24.35 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
|..||.-..--+..|+.|.+++..|...++..+.++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445566667777766666665555443
No 127
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=44.13 E-value=3.1e+02 Score=26.61 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHhhhhhhhhhc
Q 009811 192 RCKSVVHRVKKMEKDVDIACT 212 (525)
Q Consensus 192 k~ksav~~~~~~eK~vd~acs 212 (525)
+.+....++++++|=+|+.|.
T Consensus 55 ~i~~l~k~~~eL~~YLDP~~~ 75 (174)
T PF07426_consen 55 RIKELFKRIEELNKYLDPNFI 75 (174)
T ss_pred HHHHHHHHHHHHHHHcCchhh
Confidence 345566778888888887764
No 128
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.09 E-value=1.1e+02 Score=36.88 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=4.3
Q ss_pred CCCccccCCC
Q 009811 513 PPGMAFYGQP 522 (525)
Q Consensus 513 ~~g~~~y~~~ 522 (525)
|.+..=||.|
T Consensus 120 p~~~~~~gpp 129 (1007)
T KOG1984|consen 120 PSSGSGTGPP 129 (1007)
T ss_pred CCCCCcCCCC
Confidence 4443444444
No 129
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=43.73 E-value=2.2e+02 Score=30.72 Aligned_cols=49 Identities=10% Similarity=0.271 Sum_probs=32.4
Q ss_pred HHHHHHHHhccc----------chHHHHHHHHHHHhcC----Cc-Ccc------cchhhhhHHHHHHhhh
Q 009811 25 ETLSHWCIFHRS----------KAELVVATWDKQFHSS----QL-VQK------VPLLYLANDILQNSKR 73 (525)
Q Consensus 25 qtlS~W~i~h~k----------~A~~IV~~W~k~l~ks----~~-~kK------L~lLYLaNDVlQnSkr 73 (525)
.+|+.|+|.-.. .-..++.-++..|++- .+ ..| =..+|++|+++-.+-+
T Consensus 46 ~~L~~WL~~~~g~~f~~p~e~DDPn~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL~ 115 (359)
T PF10498_consen 46 TSLCAWLISKAGRKFEQPQEYDDPNATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEALK 115 (359)
T ss_pred HHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 578899988543 2346777777777752 11 133 3568999998888763
No 130
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=43.67 E-value=3.5e+02 Score=30.80 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHE-------Q-------ESELENVRTQMQVAQAQAEEACN 284 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~-------q-------E~~lE~vr~~~q~aq~~~~ra~~ 284 (525)
...+.++++..+..+....+.++.....+-.|.+.|++.+.. + ....+...........+-..+.+
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666555555555554444333222 1 22222222223333444556677
Q ss_pred HHHhhcccCCCC
Q 009811 285 MRKRLNDEDYVS 296 (525)
Q Consensus 285 lr~~Ld~~~~~~ 296 (525)
+++++...+..+
T Consensus 426 ikR~lek~nLPG 437 (560)
T PF06160_consen 426 IKRRLEKSNLPG 437 (560)
T ss_pred HHHHHHHcCCCC
Confidence 888887765443
No 131
>smart00150 SPEC Spectrin repeats.
Probab=43.53 E-value=1.7e+02 Score=23.50 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQ 273 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q 273 (525)
...++++++....-+...-..++.+......|+..=-..-...+..++.+...|.
T Consensus 33 ~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~ 87 (101)
T smart00150 33 VEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWE 87 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555554311112233444444554443
No 132
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=43.18 E-value=1e+02 Score=26.69 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEA 245 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~ 245 (525)
.++|++..+..+.+|-..|+.++.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~ 26 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVES 26 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567888888888888888887654
No 133
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.17 E-value=5.1e+02 Score=28.85 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr 269 (525)
+..+|++.-...++.-++|..+..-..+-|+.|++.|..-|+.++++.
T Consensus 135 ~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 135 YQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444555555555666666666666666666666666666666555555
No 134
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=43.15 E-value=3.9e+02 Score=29.33 Aligned_cols=21 Identities=10% Similarity=0.117 Sum_probs=9.3
Q ss_pred HHHhhhhHHHHHHHhhhhhhh
Q 009811 189 EMARCKSVVHRVKKMEKDVDI 209 (525)
Q Consensus 189 ~l~k~ksav~~~~~~eK~vd~ 209 (525)
+|...+++.+...+-.|.+++
T Consensus 168 Elq~k~t~~~afn~tikife~ 188 (464)
T KOG4637|consen 168 ELQMKRTAIEAFNETIKIFEE 188 (464)
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 344445555444333444443
No 135
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.12 E-value=4.7e+02 Score=32.36 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHH
Q 009811 337 SQMIMHSVLSTFA 349 (525)
Q Consensus 337 s~~~l~svlss~a 349 (525)
-...|..+|.+|.
T Consensus 514 IE~~L~n~lnaFi 526 (1074)
T KOG0250|consen 514 IERCLGNLLNAFI 526 (1074)
T ss_pred HHHHHHHhhhhhe
Confidence 3556666666664
No 136
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.10 E-value=4.8e+02 Score=29.52 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009811 272 MQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 272 ~q~aq~~~~ra~~lr~~L 289 (525)
.+.|..+..++....+.|
T Consensus 374 ~~~a~~l~~~v~~~l~~L 391 (563)
T TIGR00634 374 RKAAERLAKRVEQELKAL 391 (563)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344566666666666664
No 137
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=43.04 E-value=1.5e+02 Score=32.81 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 009811 226 LEEEENMLKQCIEKLK 241 (525)
Q Consensus 226 Lee~e~~lke~IeqLe 241 (525)
+.-.|+.|++.+++|+
T Consensus 72 ~~lnEkvLkdkrKK~r 87 (487)
T KOG4672|consen 72 LRLNEKVLKDKRKKRR 87 (487)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444566666666654
No 138
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=43.01 E-value=3.6e+02 Score=27.10 Aligned_cols=101 Identities=9% Similarity=0.265 Sum_probs=64.4
Q ss_pred hcccHHHHHHhhhhHH--HHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 009811 182 EQLSEEEEMARCKSVV--HRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLK---QCIEKLKSVEASRVALVSQLKE 256 (525)
Q Consensus 182 ~~~~e~~~l~k~ksav--~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lk---e~IeqLe~~~~aR~~Lis~Lke 256 (525)
...|...+|.|...++ ..++.++..++ .+ ..+.+++++...++. ..|..+.- -.+|+.||=-+++
T Consensus 71 ~~~d~K~ELRkLnrslllnfleL~~ILi~-------~P--~~~e~Kvedi~tifvnlHHLiNeyRP-hQaResLi~lmE~ 140 (223)
T KOG0570|consen 71 NNYDYKKELRKLNRSLLLNFLELLDILIR-------AP--DMREEKVEDIRTIFVNLHHLINEYRP-HQARESLIMLMER 140 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHh-------Cc--hhHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHH
Confidence 4456667888866543 34566555554 22 255666666666654 44444432 3589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccc
Q 009811 257 ALHEQESELENVRTQMQVAQAQA-EEACNMRKRLNDE 292 (525)
Q Consensus 257 AL~~qE~~lE~vr~~~q~aq~~~-~ra~~lr~~Ld~~ 292 (525)
.+++-++..|..+..+..++..+ +....|+-.++..
T Consensus 141 Qi~~~~~~ve~~kk~~~~~~e~l~d~~~tL~~~~~~~ 177 (223)
T KOG0570|consen 141 QIEQRSDIVEDFKKHLRQVREVLDDQFQTLRGKLPAP 177 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 99988888888888877776655 4444555555443
No 139
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.90 E-value=2.2e+02 Score=32.58 Aligned_cols=67 Identities=25% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
+.+++.....++-.++.|+.....-..-++.|..-|..-+.+++.......+.+ +++..|+++|+-.
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~---n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQ---NRVQTLLEELAFL 216 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 344444445555555555544444444555666666666666666655554443 3444555555443
No 140
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.85 E-value=2e+02 Score=32.26 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 009811 253 QLKEALHEQESELENVRTQMQVAQAQ-AEEACNMRKRLNDE 292 (525)
Q Consensus 253 ~LkeAL~~qE~~lE~vr~~~q~aq~~-~~ra~~lr~~Ld~~ 292 (525)
.+.++++..+.+++..+.+++..+.. -..+.+|.+||++.
T Consensus 102 ~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 102 QIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555544444444444333322 34556778888654
No 141
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=42.80 E-value=1.9e+02 Score=30.59 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.++++|.++.......-+........|...+..|+.|...|++....+..-.+=|..+.+.+..++++-.+
T Consensus 262 ~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~~~~~~~~ 332 (337)
T cd09234 262 NILKALTEANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLEGNVSKLLQRIKS 332 (337)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333222222445677888888888888777776666666655555555566666665544
No 142
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.41 E-value=8e+02 Score=30.88 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=35.6
Q ss_pred CHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcC-cc--cchhhhhHHHHHHhh
Q 009811 6 SEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLV-QK--VPLLYLANDILQNSK 72 (525)
Q Consensus 6 sed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~-kK--L~lLYLaNDVlQnSk 72 (525)
+.+.+++.|+..+.--.-++..-+.|-......+..+......+.+...+ ++ -.+=||.--|.+.-+
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~ 848 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEA 848 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665555555555555544432111 11 123455555555543
No 143
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.06 E-value=2e+02 Score=24.28 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMR 286 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr 286 (525)
|..||.-.+--++.|+.|..+|.++....++.+.++ +...+|..+++
T Consensus 10 i~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ql---r~L~~kl~~~~ 56 (72)
T COG2900 10 IIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQL---RLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhc
Confidence 444554445556777888888888877777666655 33344444443
No 144
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=41.84 E-value=2.4e+02 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCI 237 (525)
Q Consensus 223 ~keLee~e~~lke~I 237 (525)
+.+++..+..++...
T Consensus 50 ~~~l~~le~~r~~~~ 64 (143)
T PF05130_consen 50 LEELRELEKQRQQLL 64 (143)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 145
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=41.80 E-value=2.2e+02 Score=24.17 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe 241 (525)
...+..+|++....+..-|+.|+
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444
No 146
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.48 E-value=3.5e+02 Score=27.50 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 220 KTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
..-.+.+++.+..|++|.+..+.....|...++.|+..-+....
T Consensus 21 ~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 21 LQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888777777888777777766555433
No 147
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.40 E-value=1.9e+02 Score=32.32 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 009811 254 LKEALHEQESELENVR 269 (525)
Q Consensus 254 LkeAL~~qE~~lE~vr 269 (525)
|.+.+.++.+++.+++
T Consensus 129 ~~~~~~~~~~~~~~~~ 144 (525)
T TIGR02231 129 WFQAFDFNGSEIERLL 144 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444433333333
No 148
>PRK00846 hypothetical protein; Provisional
Probab=41.40 E-value=2.2e+02 Score=24.21 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
+.+||..-.-..+.|+.|..++..-...|+.|++.+....++++.
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666655555555555555555544444433
No 149
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.23 E-value=4.7e+02 Score=30.19 Aligned_cols=15 Identities=0% Similarity=0.184 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcc
Q 009811 21 QQCIETLSHWCIFHR 35 (525)
Q Consensus 21 QeSIqtlS~W~i~h~ 35 (525)
+.++-.+-.||++-.
T Consensus 41 Kttll~ai~~~LyG~ 55 (650)
T TIGR03185 41 KTTLLDAIQLALYGK 55 (650)
T ss_pred HHHHHHHHHHHhcCc
Confidence 667777778888654
No 150
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.23 E-value=1.5e+02 Score=24.58 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
|..||.-..--+..|+.|.+++..|....+..+.+
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556667777777776655555443
No 151
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=40.80 E-value=3.2e+02 Score=35.94 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 190 MARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQL 254 (525)
Q Consensus 190 l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~L 254 (525)
+.++.+++...++.-|.+|..|.-.+ .....+..+++.+++-++.+-..+.+.......+.+.+
T Consensus 1423 ~~~~~~~~~~le~k~k~f~k~l~e~k-~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~ 1486 (1930)
T KOG0161|consen 1423 LERSRAAVAALEKKQKRFEKLLAEWK-KKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQL 1486 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555554443322 11455666666666666666666655555555555433
No 152
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.55 E-value=3.4e+02 Score=26.01 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
...+...+++..+.+.+.+++|..-...-..+.+.+++.+......+..
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l~~~l~~ 188 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQALQSGLSQ 188 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777766655544444444444444433333333
No 153
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=40.28 E-value=4.1e+02 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 100 SGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
.+.+-+.+|.+.+++|.-...+ ...|..
T Consensus 16 ~G~~~~~el~~f~kERa~IE~~Yak~L~k 44 (258)
T cd07655 16 DGHKLCDDLMKMVQERAEIEKAYAKKLKE 44 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688889999999888777 455554
No 154
>PRK04325 hypothetical protein; Provisional
Probab=40.22 E-value=1.6e+02 Score=24.59 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
|..||.-..--+..|+.|.+++..|..+++.++.++
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455566677777777766665555443
No 155
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=40.16 E-value=1.1e+02 Score=31.06 Aligned_cols=67 Identities=27% Similarity=0.325 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 227 EEEENMLKQCIEKLKSVE-----ASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 227 ee~e~~lke~IeqLe~~~-----~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
..+...+++|.+.|+..+ ..|-.-+..|++|+++.....+....+.+.++-...+=+.|++||....
T Consensus 68 k~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 68 KRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666542 2233356677777777777777777777777777777777788876543
No 156
>PRK00736 hypothetical protein; Provisional
Probab=39.96 E-value=1.8e+02 Score=23.96 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
|..||.-..--+..|+.|.+++..|...++.++.+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455556666666665555554433
No 157
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.88 E-value=2.3e+02 Score=23.87 Aligned_cols=61 Identities=11% Similarity=0.308 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
.+.+++.-+.++.....-..+.....+.++...+.++.+......+...++.+.++-+-+.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555555555555556666777777777777777777777777777777766655443
No 158
>PRK02224 chromosome segregation protein; Provisional
Probab=39.61 E-value=6.3e+02 Score=29.90 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.2
Q ss_pred hHHHHH
Q 009811 172 IVSAYH 177 (525)
Q Consensus 172 ivsa~q 177 (525)
++..|.
T Consensus 469 ~~~~~~ 474 (880)
T PRK02224 469 TIEEDR 474 (880)
T ss_pred hHHHHH
Confidence 333333
No 159
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.58 E-value=3.5e+02 Score=29.07 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
++||+.++..++-.+++.+..+.+.+-|+.-++-|.+-
T Consensus 14 q~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L 51 (330)
T PF07851_consen 14 QELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKEL 51 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444434333
No 160
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.57 E-value=2.9e+02 Score=36.37 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=18.1
Q ss_pred chhhhhHHHHHHhhhcChhhHHHHHHHHHHH
Q 009811 59 PLLYLANDILQNSKRKGNEFVTEFWKVLPAA 89 (525)
Q Consensus 59 ~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a 89 (525)
.++-+=..|-+.+..+.|.+...|.++-|-+
T Consensus 801 ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL 831 (1930)
T KOG0161|consen 801 AIKVIQRNIRAYLKLRTWPWWRLFTKVKPLL 831 (1930)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 3333334444445556688888887776644
No 161
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.40 E-value=2.4e+02 Score=34.00 Aligned_cols=6 Identities=33% Similarity=-0.036 Sum_probs=2.4
Q ss_pred CCcccC
Q 009811 439 QQYLQP 444 (525)
Q Consensus 439 ~q~~q~ 444 (525)
+|++|.
T Consensus 59 ~q~~~~ 64 (1007)
T KOG1984|consen 59 PQSGQS 64 (1007)
T ss_pred CCCCCC
Confidence 344443
No 162
>PRK04325 hypothetical protein; Provisional
Probab=39.11 E-value=2.3e+02 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLK 255 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~Lk 255 (525)
.+||..-.-..+.|+.|..++..-...|+.|+
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333
No 163
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=38.91 E-value=1.5e+02 Score=33.78 Aligned_cols=21 Identities=10% Similarity=0.359 Sum_probs=12.7
Q ss_pred cCCcchhhHHHHHHHHhhhcc
Q 009811 96 NGDDSGKNVVSRLVNIWDERR 116 (525)
Q Consensus 96 ~~d~~~kkkV~Rll~IWeeR~ 116 (525)
.+++.......|-.++|++-+
T Consensus 188 ~~qeeevrp~grqrklWkdeG 208 (694)
T KOG4264|consen 188 RAQEEEVRPCGRQRKLWKDEG 208 (694)
T ss_pred cccchhhchhhhhhhhhhhcc
Confidence 344444555667777887554
No 164
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.82 E-value=1.9e+02 Score=23.71 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENV 268 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~v 268 (525)
+.+||..-....+.|+.|..++..-..-|+.|++.+.....+++.+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666666666666666666666666555555544443
No 165
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.71 E-value=1.9e+02 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
..++.+...|..++..|..|+++....+...
T Consensus 61 ~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~ 91 (200)
T cd07639 61 ECLEKFSDGLNHILDSHAELLEATQFSFKQQ 91 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677777777665554433
No 166
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.68 E-value=1.7e+02 Score=30.80 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 009811 269 RTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 269 r~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
..+.+--+++.+++...-++|..+
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqe 117 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQE 117 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555544
No 167
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.65 E-value=6.4e+02 Score=29.77 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=53.6
Q ss_pred hhhHHHHHHHhhhhhhhhhcC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 193 CKSVVHRVKKMEKDVDIACTN--AKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRT 270 (525)
Q Consensus 193 ~ksav~~~~~~eK~vd~acs~--~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~ 270 (525)
+|..-+++..+|+++...... ........|+..|...+..-...-+.|...-....+|.+.|.+|-.+.|.....++.
T Consensus 561 lk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~ 640 (697)
T PF09726_consen 561 LKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRK 640 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666665432211 100114566667755555555555556666666677788888877777776666666
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 009811 271 QMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 271 ~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
+.+ ++.+|+.|+.+.
T Consensus 641 ~d~-------ei~~lk~ki~~~ 655 (697)
T PF09726_consen 641 KDK-------EIEELKAKIAQL 655 (697)
T ss_pred HHH-------HHHHHHHHHHHH
Confidence 554 456677766544
No 168
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.56 E-value=3e+02 Score=24.90 Aligned_cols=23 Identities=30% Similarity=0.266 Sum_probs=12.2
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSK-ELEEEENMLKQCIEKLK 241 (525)
Q Consensus 219 ~~~l~k-eLee~e~~lke~IeqLe 241 (525)
|..|++ +.+++...++.-++.++
T Consensus 61 G~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 61 GNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hHHHhhccHHHHHHHHHHHHHHHH
Confidence 455554 55555555555555444
No 169
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=38.53 E-value=2.4e+02 Score=28.62 Aligned_cols=7 Identities=0% Similarity=-0.149 Sum_probs=2.8
Q ss_pred HHHhhhc
Q 009811 109 VNIWDER 115 (525)
Q Consensus 109 l~IWeeR 115 (525)
=++|...
T Consensus 58 ~k~~~~~ 64 (229)
T cd07616 58 EKLDRKA 64 (229)
T ss_pred HHHhccC
Confidence 3444433
No 170
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.51 E-value=5.4e+02 Score=32.23 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=11.4
Q ss_pred cChhhHHHHHHHHHHHH
Q 009811 74 KGNEFVTEFWKVLPAAL 90 (525)
Q Consensus 74 Kg~eF~~aF~~vLp~a~ 90 (525)
++..|+.+|.-+|-+.+
T Consensus 703 ~d~~~r~aFYfaLrdtL 719 (1293)
T KOG0996|consen 703 KDEKFRPAFYFALRDTL 719 (1293)
T ss_pred CCHHHHHHHHHHHhhhh
Confidence 45677888877666553
No 171
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=38.46 E-value=3.8e+02 Score=28.22 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=57.5
Q ss_pred ccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 184 LSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 184 ~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
.|..+.++|...+|+....-.+.+|+ . .....++|.++...++.-|+.|.+.-.--..|-.-+..-..+.|.
T Consensus 86 ~dypaiisklsaavenak~e~~~id~-------~-na~i~k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~lEK 157 (353)
T PF01540_consen 86 GDYPAIISKLSAAVENAKNEKKAIDD-------K-NAQIDKKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIAKLEK 157 (353)
T ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhh-------h-hHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666654444455663 2 456678888888888888998888777666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009811 264 ELENVRTQMQVAQAQAEEACN 284 (525)
Q Consensus 264 ~lE~vr~~~q~aq~~~~ra~~ 284 (525)
++.--..-...-.+|++.+..
T Consensus 158 KFqI~~~FKekLesfa~~L~~ 178 (353)
T PF01540_consen 158 KFQIDKDFKEKLESFADLLNK 178 (353)
T ss_pred hcCCcHHHHHHHHHHHHHHHH
Confidence 554433333333444443333
No 172
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.27 E-value=5.1e+02 Score=31.91 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhcccHHHHHHhhhh-------HHHHHHHhhhhhhhhhcCC--------------------CCcchhH
Q 009811 169 AEKIVSAYHLVLCEQLSEEEEMARCKS-------VVHRVKKMEKDVDIACTNA--------------------KDPKRKT 221 (525)
Q Consensus 169 ~ekivsa~q~l~~~~~~e~~~l~k~ks-------av~~~~~~eK~vd~acs~~--------------------~d~r~~~ 221 (525)
++.+...+..|.+..-++.....+|.. ..+++++++|+|+..|--. .+..-+.
T Consensus 173 ~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~ 252 (1072)
T KOG0979|consen 173 AEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNA 252 (1072)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
+....+-....++...+....+.+.++.|-+...+.-.....+-...+.....++.-.+....+.+++
T Consensus 253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v 320 (1072)
T KOG0979|consen 253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEV 320 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 173
>PRK10869 recombination and repair protein; Provisional
Probab=38.26 E-value=2.1e+02 Score=32.45 Aligned_cols=11 Identities=0% Similarity=0.150 Sum_probs=5.4
Q ss_pred hhhhHHHHHHH
Q 009811 169 AEKIVSAYHLV 179 (525)
Q Consensus 169 ~ekivsa~q~l 179 (525)
.++|..+++.+
T Consensus 220 ~e~i~~~~~~~ 230 (553)
T PRK10869 220 SGQLLTTSQNA 230 (553)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 174
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.24 E-value=5.8e+02 Score=31.03 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=11.8
Q ss_pred hhhHHHHHHHhhhcccHHHHH
Q 009811 170 EKIVSAYHLVLCEQLSEEEEM 190 (525)
Q Consensus 170 ekivsa~q~l~~~~~~e~~~l 190 (525)
|+|-.++..+.....+.++..
T Consensus 389 eqLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 389 EQLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555444443
No 175
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=37.79 E-value=2.9e+02 Score=27.73 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 232 MLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 232 ~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
.++.+...|...++.|..|+++..+.+...
T Consensus 68 ~l~~Fs~~l~el~~~~~~L~~~~~~~l~~p 97 (207)
T cd07634 68 SLKEFARLLIAVEEERRRLIQNANDVLIAP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556677776666555444
No 176
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=37.65 E-value=4.4e+02 Score=28.33 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=11.3
Q ss_pred HHHhhhhHHHHHHHhhhhhhh
Q 009811 189 EMARCKSVVHRVKKMEKDVDI 209 (525)
Q Consensus 189 ~l~k~ksav~~~~~~eK~vd~ 209 (525)
+|.|.+.+.+-|.++|-++|.
T Consensus 18 eLEkLN~sTDdIN~~E~~Le~ 38 (426)
T KOG2008|consen 18 ELEKLNQSTDDINRRETELED 38 (426)
T ss_pred HHHHhccchhhHHHHHHHHHH
Confidence 455555555555555555553
No 177
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=37.54 E-value=3.2e+02 Score=24.90 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr 269 (525)
.+..++..-..|...+++|++.+...=+-+..+..+|.......+.+|
T Consensus 73 ~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR 120 (132)
T PF10392_consen 73 VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLR 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444433
No 178
>TIGR02753 sodN superoxide dismutase, Ni. This superoxide dismutase uses nickel, rather than iron, manganese, copper, or zinc. Its gene is always accompanied by a gene for a required protease.
Probab=37.37 E-value=1.9e+02 Score=27.51 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=43.9
Q ss_pred HHHHHHHhhcc----CCHHHHHHHHHHHHhcccchHH----HHHHHHHHHhcCCcCcccchhhhhHHHHHHh
Q 009811 8 QILAEKLSKLN----CTQQCIETLSHWCIFHRSKAEL----VVATWDKQFHSSQLVQKVPLLYLANDILQNS 71 (525)
Q Consensus 8 d~l~~kL~~Ln----~SQeSIqtlS~W~i~h~k~A~~----IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnS 71 (525)
....+++..|+ .+-++-...++|++.--.+|.. |.-+|-+||+-..+++--.+.=|.|.++..+
T Consensus 42 ~~~~~ki~~l~~~~~~~~~~~n~~~R~i~~KE~~A~~vk~~i~vlWtDYFKp~h~e~yP~lh~l~h~~~~~a 113 (145)
T TIGR02753 42 LAMTKKLNALKPPSSLDADYQNTFSRFVAVKEEQAIETKKEISVLWTDYFKPPHLEQFPELHELVWKAAKAC 113 (145)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHhhchHHHHHHHHHHHHH
Confidence 34556676666 2456678899999988788776 6667899997655554445555666666663
No 179
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=37.33 E-value=3.3e+02 Score=27.02 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhcccHHHHHHhhhhH--HHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 009811 171 KIVSAYHLVLCEQLSEEEEMARCKSV--VHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKL--KSVEAS 246 (525)
Q Consensus 171 kivsa~q~l~~~~~~e~~~l~k~ksa--v~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqL--e~~~~a 246 (525)
++...|+.+.....-..+.+.|++.. .+.++.++++|+.+ ..+.....++|++....++.=+..+ +++.+-
T Consensus 120 ~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~-----e~~~~~a~~~fe~is~~~k~El~rF~~erv~df 194 (224)
T cd07623 120 KVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEW-----EAKVDRGQKEFEEISKTIKKEIERFEKNRVKDF 194 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 247 RVALVSQLKEALHEQESELENVRTQMQVAQ 276 (525)
Q Consensus 247 R~~Lis~LkeAL~~qE~~lE~vr~~~q~aq 276 (525)
|..|+..|+..++.++...+.-+..+-.++
T Consensus 195 k~~l~~~le~~i~~q~~~~~~We~~~pe~~ 224 (224)
T cd07623 195 KDIIIKYLESLLNTQQQLIKYWEAFLPEAK 224 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC
No 180
>PRK04406 hypothetical protein; Provisional
Probab=37.19 E-value=1.9e+02 Score=24.36 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 236 CIEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 236 ~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
-|..||.-..--+..|+.|.+++..|..+++.++.++
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445566677777777766665555443
No 181
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=37.08 E-value=6.1e+02 Score=30.12 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhh
Q 009811 276 QAQAEEACNMRKRL 289 (525)
Q Consensus 276 q~~~~ra~~lr~~L 289 (525)
+..+..+..||+.|
T Consensus 583 ~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 583 SMLVQQVEDLRQTL 596 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666777666
No 182
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=37.06 E-value=70 Score=34.80 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHHHHHHHHhhcCCcchhh
Q 009811 24 IETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKN 103 (525)
Q Consensus 24 IqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a~~~v~~~~d~~~kk 103 (525)
+.-+..++-....-+..+++...++-=.++..|.+.+|..+.+|+...- -..|.+++..+|..+..+-+...-+
T Consensus 239 ~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~------~~~f~~i~~~lf~~la~ci~S~h~q 312 (409)
T PF01603_consen 239 SYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP------PEEFQKIMVPLFKRLAKCISSPHFQ 312 (409)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3344556666666777777777777777888899999999999996522 2468888889998888776777788
Q ss_pred HHHHHHHHhhhcccc
Q 009811 104 VVSRLVNIWDERRVF 118 (525)
Q Consensus 104 kV~Rll~IWeeR~VF 118 (525)
...|.+.+|....+.
T Consensus 313 VAErAl~~w~n~~~~ 327 (409)
T PF01603_consen 313 VAERALYFWNNEYFL 327 (409)
T ss_dssp HHHHHHGGGGSHHHH
T ss_pred HHHHHHHHHCCHHHH
Confidence 999999999987654
No 183
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=37.02 E-value=3.8e+02 Score=25.56 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEA 245 (525)
Q Consensus 231 ~~lke~IeqLe~~~~ 245 (525)
..+.++|..|+..++
T Consensus 67 ~nyq~fI~~Le~~I~ 81 (148)
T COG2882 67 QNYQQFISQLEVAID 81 (148)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556665554444
No 184
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.92 E-value=6.4e+02 Score=28.97 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQ-------LKEALHEQESELENVRTQ-------MQVAQAQAEEACN 284 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~-------LkeAL~~qE~~lE~vr~~-------~q~aq~~~~ra~~ 284 (525)
...|.++|++.+..+.+.-+.++....++-.|.+. |...-.+|+.-.+.++.+ ...+..+..++..
T Consensus 349 vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e 428 (570)
T COG4477 349 VRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788877777777777766655554444433 333333333333333222 3334445556667
Q ss_pred HHHhhcccCCCC
Q 009811 285 MRKRLNDEDYVS 296 (525)
Q Consensus 285 lr~~Ld~~~~~~ 296 (525)
++++|.-++..+
T Consensus 429 ikR~mek~nLPG 440 (570)
T COG4477 429 IKRYMEKSNLPG 440 (570)
T ss_pred HHHHHHHcCCCC
Confidence 777777665444
No 185
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=36.58 E-value=4.3e+02 Score=27.86 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCCCcc--hhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 009811 169 AEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPK--RKTLSKELEEEENMLK-QCIEKLKSVEA 245 (525)
Q Consensus 169 ~ekivsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~d~r--~~~l~keLee~e~~lk-e~IeqLe~~~~ 245 (525)
.+.|..-|..++..+...+..+.....-...+.+-...+-.-.+..-..+ ...|+++|+-+.+.++ ++....+..+.
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~ 103 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE 103 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 246 SRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 246 aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.|..+.+.+...|......++.-...... ..+.-..|+.+|..
T Consensus 104 kR~el~~kFq~~L~dIq~~~ee~~~~~~k---~~~eN~~L~eKlK~ 146 (309)
T PF09728_consen 104 KRKELSEKFQATLKDIQAQMEEQSERNIK---LREENEELREKLKS 146 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHH---HHHHHHHHHHHHHH
No 186
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.40 E-value=2.6e+02 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 009811 269 RTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 269 r~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
....++..+.-+|++.|..||++
T Consensus 49 ~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 49 EQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 33345556667788888888875
No 187
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=36.37 E-value=3.8e+02 Score=27.00 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=30.0
Q ss_pred HHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 198 HRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHE 260 (525)
Q Consensus 198 ~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~ 260 (525)
+.|+++++.|+ ....+|++....++++-..++.+...|...-..+.+.|+.
T Consensus 32 s~Ie~LK~~i~------------~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 32 SEIEKLKKSIE------------ELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666665 2355666666666666666666666666544455555444
No 188
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.98 E-value=2.5e+02 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 226 LEEEENMLKQCIEKLKSVEASRVALVSQL 254 (525)
Q Consensus 226 Lee~e~~lke~IeqLe~~~~aR~~Lis~L 254 (525)
||..-.-..+.|+.|..++..-...|+.|
T Consensus 13 LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L 41 (72)
T PRK02793 13 LESRLAFQEITIEELNVTVTAHEMEMAKL 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333333333
No 189
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.70 E-value=3.1e+02 Score=31.00 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.4
Q ss_pred cCcccchhhhhHHHHHHhhh
Q 009811 54 LVQKVPLLYLANDILQNSKR 73 (525)
Q Consensus 54 ~~kKL~lLYLaNDVlQnSkr 73 (525)
..+++++=|++||-.|.++.
T Consensus 258 ~a~~~~~p~~~~~~~q~~~~ 277 (508)
T KOG3091|consen 258 VAGRIPAPQSLNDQVQKTLK 277 (508)
T ss_pred cccCCCcchhHHHHHHHHHH
Confidence 56778888999998888775
No 190
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.69 E-value=4.6e+02 Score=29.85 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVS 252 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis 252 (525)
...+.++|++.+..++.+.+.+......+..+.+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e 383 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQE 383 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5566666666666666665555444433333333
No 191
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=35.57 E-value=4.7e+02 Score=26.21 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
...++.+..-|..++..|..|+++..+.+...
T Consensus 66 ~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~p 97 (207)
T cd07602 66 AESLKEFGRLIETVEDERDRMLENAEEQLIEP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888889999999887776655
No 192
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=35.54 E-value=5.9e+02 Score=27.38 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Q 009811 252 SQLKEALHEQESELENVRTQMQV-AQAQAEEACNMRKRLN 290 (525)
Q Consensus 252 s~LkeAL~~qE~~lE~vr~~~q~-aq~~~~ra~~lr~~Ld 290 (525)
+.|+.|++.+|+-.|+++.-+-+ -+.-++++.+|..-+.
T Consensus 176 EelrqA~eKfEESkE~aE~sM~nlle~d~eqvsqL~~Li~ 215 (366)
T KOG1118|consen 176 EELRQALEKFEESKELAEDSMFNLLENDVEQVSQLSALIQ 215 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46778888887777776655433 3556677777666553
No 193
>PRK02119 hypothetical protein; Provisional
Probab=35.54 E-value=2.1e+02 Score=23.86 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
|..||.-..--+..|+.|.+++..+...++..+.++
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445666677777777766666555443
No 194
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=35.41 E-value=4.8e+02 Score=26.40 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 244 EASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 244 ~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
...|..++..|..|...|.+..+.+..-..=|..+.+.+..++++..+.
T Consensus 240 ~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f 288 (296)
T PF13949_consen 240 QKERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDF 288 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888777777777777777777777766543
No 195
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=35.38 E-value=3.9e+02 Score=27.92 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 239 KLKSVEASRVALVSQLKEAL--HEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 239 qLe~~~~aR~~Lis~LkeAL--~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.+.+....-.+++..|.+.- ..+++..+..+....++..-.+++..+++++..
T Consensus 191 ~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~ 245 (322)
T COG0598 191 YLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSS 245 (322)
T ss_pred HHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444555554443 345666667777777777777777777777754
No 196
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.36 E-value=6.9e+02 Score=29.78 Aligned_cols=12 Identities=25% Similarity=-0.172 Sum_probs=6.2
Q ss_pred HHHHHHHHhccc
Q 009811 25 ETLSHWCIFHRS 36 (525)
Q Consensus 25 qtlS~W~i~h~k 36 (525)
..++.++..|..
T Consensus 247 ~~L~~~i~~~~~ 258 (771)
T TIGR01069 247 RTLSEKVQEYLL 258 (771)
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 197
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=35.34 E-value=3e+02 Score=23.83 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 009811 229 EENMLKQCIEKLKSVE 244 (525)
Q Consensus 229 ~e~~lke~IeqLe~~~ 244 (525)
+...|...|+.|++..
T Consensus 9 al~rL~~aid~LE~~v 24 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAV 24 (89)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 198
>PF13166 AAA_13: AAA domain
Probab=35.19 E-value=3.4e+02 Score=31.17 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 243 VEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 243 ~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
.......-+..+++.+...+.+...++..+...+..+++.....+++
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33333444445555566666677777777777788889998888888
No 199
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=35.19 E-value=1.6e+02 Score=27.56 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
-.+|+.-|++.+++.++|.++++.+..+++.+. ++..|--.-.- +-++.+-+-+.||.++
T Consensus 79 K~KLl~mL~eVd~RY~qY~~Qmq~VvssFe~va-G~gaA~~Ytal----------AlqamSrhFR~LRdaI 138 (140)
T PF07526_consen 79 KAKLLSMLDEVDRRYRQYYDQMQAVVSSFEAVA-GLGAAAPYTAL----------ALQAMSRHFRCLRDAI 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchhhHHH----------HHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999888754 66555444322 3356666677777665
No 200
>PRK00736 hypothetical protein; Provisional
Probab=35.17 E-value=2.5e+02 Score=23.02 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLK 255 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~Lk 255 (525)
+||..-.-..+.|+.|..++..-...|+.|+
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333333
No 201
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=35.09 E-value=6.2e+02 Score=29.34 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhcccHHHHHHhhhhHHHH-------HHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009811 170 EKIVSAYHLVLCEQLSEEEEMARCKSVVHR-------VKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKS 242 (525)
Q Consensus 170 ekivsa~q~l~~~~~~e~~~l~k~ksav~~-------~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~ 242 (525)
..+..............+..+...+.+++- +++|+..++.. ..+...|..+|+..+.-|.+-++.|+.
T Consensus 359 ~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s-----~~rl~~L~~qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 359 KQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS-----EQRLVELAQQWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 243 VEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 243 ~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
....+. +..++-+++.+...+..+....+++.--+...+|.+.++
T Consensus 434 ~~~~~~---~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 434 KASNRE---SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHhhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 202
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.04 E-value=6.6e+02 Score=28.10 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 235 QCIEKLKSVEASRVALVSQLKEALHEQESELEN-----VRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 235 e~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~-----vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
..|++|+........-+++|+++..+.|..+|. |..+|+..+-.-...+-|.+|||..+
T Consensus 165 ~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpv 228 (552)
T KOG2129|consen 165 NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPV 228 (552)
T ss_pred HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344555555555555566777766666555554 44556665555556677888887654
No 203
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=35.01 E-value=4.4e+02 Score=26.86 Aligned_cols=58 Identities=16% Similarity=0.353 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 233 LKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 233 lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
+++....+.....+-+.+++.++..|+.+++....++......+...+++..|+..+-
T Consensus 20 ~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP 77 (243)
T PF07160_consen 20 LKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVP 77 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444455555666677777777777777777776666666666666665553
No 204
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=34.88 E-value=2.3e+02 Score=29.83 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 243 VEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 243 ~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
....|...+..|+.|...|++....+..-.+=|..+.+.+..++++..+
T Consensus 289 ~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~~~~~~ 337 (342)
T cd08915 289 SLDPREEALQDLEASYKKYLELKENLNEGSKFYNDLIEKVNRLLEECED 337 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777666665555555555555555555555554443
No 205
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=34.79 E-value=4.3e+02 Score=30.35 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=4.9
Q ss_pred cCccCCCCCC
Q 009811 449 MTPYGYGSIP 458 (525)
Q Consensus 449 ~~py~y~~~~ 458 (525)
+++|+..-..
T Consensus 500 l~~~~l~~~~ 509 (546)
T PF07888_consen 500 LGHYSLCEQG 509 (546)
T ss_pred CCCcCcccCC
Confidence 3467654433
No 206
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.75 E-value=90 Score=26.49 Aligned_cols=44 Identities=16% Similarity=0.410 Sum_probs=25.1
Q ss_pred HHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009811 189 EMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 189 ~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe 241 (525)
.+.+|++++..+..+++.+++ +...+++|+++-...++++..|+
T Consensus 36 Klq~ar~~i~~lpgi~~s~ee---------q~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 36 KLQKARAAIRELPGIDRSVEE---------QEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHhCCCccCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666555554444432 45556666666666666666554
No 207
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.50 E-value=7e+02 Score=31.15 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 245 ASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 245 ~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.....+...++.-+.+.++.++.++.++..+..+.+++.++..++.+
T Consensus 837 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 883 (1201)
T PF12128_consen 837 QELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAE 883 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445555666666666777777777777777777777777777743
No 208
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=34.26 E-value=71 Score=27.98 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhc
Q 009811 76 NEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDER 115 (525)
Q Consensus 76 ~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR 115 (525)
..-...|..+||++|...+....++.+..+.++++.-.++
T Consensus 34 t~~~~~lK~~ipeal~t~C~KCt~kQK~~~~kv~~~l~~~ 73 (95)
T PF03392_consen 34 TPEGKELKKVIPEALKTNCAKCTPKQKENARKVIKFLKKN 73 (95)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTS-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHc
Confidence 4678889999999999988888899999999999865543
No 209
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=34.08 E-value=4.9e+02 Score=26.02 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 259 HEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 259 ~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
..++.++..+...+..|...++.+-.-..+|
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666665544444444
No 210
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=34.05 E-value=84 Score=36.80 Aligned_cols=8 Identities=25% Similarity=0.464 Sum_probs=4.4
Q ss_pred ccHHHHHH
Q 009811 184 LSEEEEMA 191 (525)
Q Consensus 184 ~~e~~~l~ 191 (525)
.|||+.|.
T Consensus 49 TDeDARla 56 (944)
T KOG4307|consen 49 TDEDARLA 56 (944)
T ss_pred ccchhhhh
Confidence 46666543
No 211
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=33.95 E-value=5e+02 Score=26.05 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
-..++.+.++++..- ..|.....-||.+++....++..-..+++.+..+|+++.
T Consensus 129 ~~~~~~Y~eqm~~aa-------~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~ 182 (202)
T TIGR03513 129 YAQQKKYIEQMSSLA-------ANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEME 182 (202)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554332 255555556666666555555555555666666666553
No 212
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.85 E-value=3.5e+02 Score=30.64 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQA 279 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~ 279 (525)
..+..++.+++.-...|.-+++.|+.-.+..|++++.++.....-+.++
T Consensus 312 nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 312 NKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555667777777778888888888888888888887777655444443
No 213
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.79 E-value=3.6e+02 Score=30.13 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 254 LKEALHE-QESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 254 LkeAL~~-qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
|..-|+. +|-+......+.|+|+-+...|+++.+||...
T Consensus 337 LQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKK 376 (575)
T KOG4403|consen 337 LQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKK 376 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 4444332 24455556667778888888888888887654
No 214
>PRK00295 hypothetical protein; Provisional
Probab=33.74 E-value=2.7e+02 Score=22.87 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEAL 258 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL 258 (525)
+.+||..-.-..+.|+.|..++..-...|+.|++.|
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555544444444444444433
No 215
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.73 E-value=9.9e+02 Score=29.44 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=13.1
Q ss_pred chhhhHHHHHHHhhhcccHHH
Q 009811 168 AAEKIVSAYHLVLCEQLSEEE 188 (525)
Q Consensus 168 ~~ekivsa~q~l~~~~~~e~~ 188 (525)
.+|.+|..|+.-+|...+-++
T Consensus 428 ~aEs~iadlkEQVDAAlGAE~ 448 (1243)
T KOG0971|consen 428 QAESTIADLKEQVDAALGAEE 448 (1243)
T ss_pred HHHHHHHHHHHHHHHhhcHHH
Confidence 466777777766666554444
No 216
>PRK02119 hypothetical protein; Provisional
Probab=33.66 E-value=2.8e+02 Score=23.10 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 009811 253 QLKEALHEQESELEN 267 (525)
Q Consensus 253 ~LkeAL~~qE~~lE~ 267 (525)
.|+.-+.++|..++.
T Consensus 13 ~LE~rla~QE~tie~ 27 (73)
T PRK02119 13 ELEMKIAFQENLLEE 27 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 217
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=33.57 E-value=5.1e+02 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
..++.+...|..+++.|..|+++-.+.+...
T Consensus 67 ~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~ 97 (207)
T cd07636 67 RSLQEFAAVLRNLEDERTRMIENASEVLITP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888889999988877766543
No 218
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=33.57 E-value=5.2e+02 Score=26.16 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 253 QLKEALHEQESELENVRTQMQVA 275 (525)
Q Consensus 253 ~LkeAL~~qE~~lE~vr~~~q~a 275 (525)
.|+.|.+++++..|.+...++++
T Consensus 158 elr~a~ekFees~E~a~~~M~~i 180 (223)
T cd07614 158 ELRQAMEKFEESKEVAETSMHNL 180 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 219
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=33.47 E-value=3.3e+02 Score=27.67 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESEL 265 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~l 265 (525)
+|......+.+.+..|++.+.-|...|.+|+.-|..-|.-|
T Consensus 64 kla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 64 KLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555577788888999999999999998888777665544
No 220
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=33.42 E-value=3.4e+02 Score=28.67 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKE 256 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~Lke 256 (525)
.|+.......+++.+|+..+.+...++..|+.
T Consensus 120 ~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~ 151 (333)
T PF05816_consen 120 MLDQLYEKNWEYYQELEKYIAAGELKLEELEA 151 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666666666666654
No 221
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=33.40 E-value=2.6e+02 Score=31.74 Aligned_cols=7 Identities=43% Similarity=0.396 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 009811 63 LANDILQ 69 (525)
Q Consensus 63 LaNDVlQ 69 (525)
|..|-.|
T Consensus 68 lVkD~~~ 74 (569)
T KOG3671|consen 68 LVKDNAQ 74 (569)
T ss_pred Eeecccc
Confidence 3333333
No 222
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.23 E-value=1.1e+03 Score=29.90 Aligned_cols=65 Identities=9% Similarity=-0.019 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 227 EEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 227 ee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.+++..++..-++++++...-++=.++-..|-+.-|..+++.+.++.+|+...+++.+|....++
T Consensus 1657 ~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~ 1721 (1758)
T KOG0994|consen 1657 LSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLR 1721 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555554444445556666666777777888888888888888888766554
No 223
>PRK11281 hypothetical protein; Provisional
Probab=33.20 E-value=3.4e+02 Score=33.84 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 254 LKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 254 LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
++..|....+..|+.++.+-+++. |..+++++|.+
T Consensus 147 ~NsqLi~~qT~PERAQ~~lsea~~---RlqeI~~~L~~ 181 (1113)
T PRK11281 147 YNSQLVSLQTQPERAQAALYANSQ---RLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 333344444444444444444332 55566666654
No 224
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.16 E-value=3.2e+02 Score=26.96 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
...++.+.+.|+.....|..|++++.+.+.+.
T Consensus 60 ~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~p 91 (200)
T cd07603 60 QNCLNKFIQALQEMNNFHTILLDQAQRTVSTQ 91 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777776665444
No 225
>smart00574 POX domain associated with HOX domains.
Probab=33.11 E-value=2.1e+02 Score=27.09 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
..+|+.-|++.+++.++|.+++..+..+++.+ .++..|.-.-.- +-++.+.+-+.||..+
T Consensus 79 k~kLl~mL~eVd~RY~qY~~qmq~v~ssFe~v-aG~g~a~~yt~l----------Al~a~SrhFr~LrdaI 138 (140)
T smart00574 79 KAKLLSMLEEVDRRYKHYYEQMQTVVSSFDQA-AGLGAAKPYTAL----------ALKTISRHFRCLKDAI 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCchHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999888876 466555444332 2356666666676654
No 226
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.90 E-value=4.4e+02 Score=30.45 Aligned_cols=45 Identities=24% Similarity=0.148 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
.+.-++|+..++.++-.-...|+..-.+-.+.++.|+.-..+||.
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEg 198 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEG 198 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhH
Confidence 678888888888888777777888888888888888776666643
No 227
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.42 E-value=1.5e+02 Score=33.85 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 258 LHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 258 L~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
.++.+....+.+...+.++++.+.+...++++
T Consensus 218 ~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~ 249 (555)
T TIGR03545 218 KEEFDKLKKEGKADKQKIKSAKNDLQNDKKQL 249 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333333333444444444433333
No 228
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=32.39 E-value=5.4e+02 Score=27.94 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=20.6
Q ss_pred HhhhhHHHHHHHhhhhhhhhhcCCCCc-chhHHHHHHHHHHHHH
Q 009811 191 ARCKSVVHRVKKMEKDVDIACTNAKDP-KRKTLSKELEEEENML 233 (525)
Q Consensus 191 ~k~ksav~~~~~~eK~vd~acs~~~d~-r~~~l~keLee~e~~l 233 (525)
.+..+.+++.+++++.+.+.-.. .|. +...+.+|+.+.+.+.
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~v~-~d~~~~~~lske~a~l~~iv 49 (363)
T COG0216 7 EKLESLLERYEELEALLSDPEVI-SDPDEYRKLSKEYAELEPIV 49 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcccc-cCHHHHHHHHHHHHHHHHHH
Confidence 34445555666777666532111 232 2566666664444333
No 229
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=32.30 E-value=2.3e+02 Score=26.34 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhhccccchh-hHHHHHHhc
Q 009811 103 NVVSRLVNIWDERRVFGSR-ARGVKDVML 130 (525)
Q Consensus 103 kkV~Rll~IWeeR~VF~~~-i~~Lke~ll 130 (525)
.=|.=||..-.+++||+.. +...+-.++
T Consensus 13 HLvfPLLeFl~~~~iy~~~dl~~akl~LL 41 (133)
T PF09440_consen 13 HLVFPLLEFLSDKGIYDEEDLLKAKLDLL 41 (133)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3366688888899999876 666555555
No 230
>smart00030 CLb CLUSTERIN Beta chain.
Probab=32.26 E-value=4.1e+02 Score=26.66 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
+++++-.=+++.-.-.++...-|..|++.|+++-.+-|+.++.
T Consensus 23 EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~ 65 (206)
T smart00030 23 EIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKD 65 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555556666777777777766665555544
No 231
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=32.12 E-value=4.9e+02 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=10.4
Q ss_pred HHhhhhHHHHHHHhhhhhh
Q 009811 190 MARCKSVVHRVKKMEKDVD 208 (525)
Q Consensus 190 l~k~ksav~~~~~~eK~vd 208 (525)
+.-+|.....+.++.|.+|
T Consensus 41 ik~aKk~rA~LNKl~k~id 59 (215)
T PF07083_consen 41 IKDAKKDRAELNKLKKAID 59 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666665
No 232
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.06 E-value=5.7e+02 Score=26.91 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Q 009811 221 TLSKELEEEENMLKQCIEKL-----KSVEASRVALVSQLKEALHEQESELENVRTQMQV----AQAQAEEACNMRKRLND 291 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqL-----e~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~----aq~~~~ra~~lr~~Ld~ 291 (525)
.+.++|++++..+.++-++- +.....-..+++.|+.-+.+.+.++...+....+ ++..-++...++++++.
T Consensus 181 ~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 181 EAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHH
Confidence 34455555555555554421 2222233445566666666666666555543221 22333345555555544
No 233
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.01 E-value=3.9e+02 Score=31.82 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=3.5
Q ss_pred hhhHHHH
Q 009811 62 YLANDIL 68 (525)
Q Consensus 62 YLaNDVl 68 (525)
|+.|||.
T Consensus 316 ~Vpndi~ 322 (782)
T PRK00409 316 VVPKDIS 322 (782)
T ss_pred eECceeE
Confidence 4555543
No 234
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.97 E-value=2.6e+02 Score=29.89 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccc
Q 009811 240 LKSVEASRVALVSQLKEALHEQESELENVRTQMQ----VAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 240 Le~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q----~aq~~~~ra~~lr~~Ld~~ 292 (525)
+++.-+.-..||+.|+.-|..-+.+|++++++.+ .+.+.-.|...||++|..+
T Consensus 214 p~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe 270 (372)
T COG3524 214 PKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQE 270 (372)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHH
Confidence 4445556788999999999999999999999984 3456667888888888654
No 235
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.75 E-value=2.3e+02 Score=32.49 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQL---KEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~L---keAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
...+++.++++...+.++...|.. .++.| -+.|++.|+.+..++....-|..-++.+.+.++++
T Consensus 264 l~~~~~~l~ea~~~l~ea~~el~~-------~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~ 330 (557)
T COG0497 264 LSELAELLEEALYELEEASEELRA-------YLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKI 330 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444555555555555555444432 22222 23466677777777777666655555554444444
No 236
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.72 E-value=6.9e+02 Score=29.50 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009811 229 EENMLKQCIEKLKSVEASRVALVSQL-------KEALHEQESELENVRTQMQVAQAQAEEACNMRKR 288 (525)
Q Consensus 229 ~e~~lke~IeqLe~~~~aR~~Lis~L-------keAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~ 288 (525)
.++.++.++.+|+...+.-+.=+..| |..+...|.+|..++.+.+.++.+...-+.-|++
T Consensus 454 ~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ 520 (697)
T PF09726_consen 454 NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKE 520 (697)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555554444433333323333 3334444556666666666665555554444443
No 237
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.69 E-value=3e+02 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRT 270 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~ 270 (525)
.+..+|......|++-++.+. .-|..|++.+..|=...|.++..+++
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~---~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWR---EERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455555555554444433 34555555555555544444444443
No 238
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.62 E-value=5.2e+02 Score=25.75 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRK 287 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~ 287 (525)
+++|+...+.|.+=..+|+..+..-...-..|.+-+...+.++.-....++.|++.-+++..||.
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~ 74 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKT 74 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 239
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=31.46 E-value=5.7e+02 Score=25.94 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe 241 (525)
-.|++.++....+|.+...
T Consensus 156 eeElr~A~~kFees~E~a~ 174 (223)
T cd07613 156 DEELRQALEKFDESKEIAE 174 (223)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555444
No 240
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=31.17 E-value=2.7e+02 Score=27.27 Aligned_cols=60 Identities=30% Similarity=0.376 Sum_probs=38.0
Q ss_pred HHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 200 VKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 200 ~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
|+++||.+|..-..+.| ..++.++++..+.....|++..+.... .-|++++.+++.+++.
T Consensus 68 VD~~ek~y~slk~v~~~--~~ky~~~vda~~k~~~~~~ke~~~~s~----------~~iq~l~k~le~v~~~ 127 (172)
T KOG3366|consen 68 VDKYEKKYDSLKPVPVD--EDKYLKEVDAEEKAAVKEIKEYESLSK----------KRIQELEKELEKVKSA 127 (172)
T ss_pred HHHHHHHHHhccccCCC--HHHHHHHhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhc
Confidence 57788888754333333 467888888888888888886664433 3345555555555544
No 241
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=31.09 E-value=2.9e+02 Score=25.29 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQL 254 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~L 254 (525)
.+++++.-..+...-+.|++...+|.+|-.+|
T Consensus 4 ~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL 35 (120)
T KOG3478|consen 4 QKKMEEEANKYQNLQKELEKYVESRQKLETQL 35 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555666666655
No 242
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.99 E-value=8.4e+02 Score=27.75 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHhhhccccchhhHHHHHHh
Q 009811 110 NIWDERRVFGSRARGVKDVM 129 (525)
Q Consensus 110 ~IWeeR~VF~~~i~~Lke~l 129 (525)
.++..|.-||+.+..|...|
T Consensus 155 ~ll~~~~~~G~a~~~le~~l 174 (569)
T PRK04778 155 SLLANRFSFGPALDELEKQL 174 (569)
T ss_pred HHHhcCccccchHHHHHHHH
Confidence 35678888988776665544
No 243
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.99 E-value=2.9e+02 Score=22.47 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESEL 265 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~l 265 (525)
-|+...+.-..+-+.|.++-.+-..+-+.|+++-....+..
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~ 45 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELE 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444445555444444444444544444443333
No 244
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.93 E-value=5.1e+02 Score=25.26 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 252 SQLKEALHEQESELENVRTQMQVAQAQAEEAC 283 (525)
Q Consensus 252 s~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~ 283 (525)
..|+..+..++...+.++..+...+.....+.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333333
No 245
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.91 E-value=5.5e+02 Score=25.62 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHhhhccccchh-hHHHHHH
Q 009811 100 SGKNVVSRLVNIWDERRVFGSR-ARGVKDV 128 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~ 128 (525)
.+..-+..|.+.+++|.-...+ ...|+..
T Consensus 16 ~g~~~~~el~~f~keRa~iE~eYak~L~kL 45 (239)
T cd07647 16 EGKKMCKELEDFLKQRAKAEEDYGKALLKL 45 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678888899999888888 4677653
No 246
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.85 E-value=4.6e+02 Score=27.59 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 226 LEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNM 285 (525)
Q Consensus 226 Lee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~l 285 (525)
+..+...++.-.+.+.+.......-+..++.-+...+.+++..+..+..++...++..+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L 187 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKL 187 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444445555555555555555555555555444444333
No 247
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=30.79 E-value=7.4e+02 Score=27.06 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=8.6
Q ss_pred chhhhHHHHHHHhh
Q 009811 168 AAEKIVSAYHLVLC 181 (525)
Q Consensus 168 ~~ekivsa~q~l~~ 181 (525)
..+.|+.+++..+.
T Consensus 252 El~~V~~el~~~~~ 265 (412)
T PF04108_consen 252 ELPDVVKELQERLD 265 (412)
T ss_pred hHHHHHHHHHHHHH
Confidence 45666777766554
No 248
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.78 E-value=2.9e+02 Score=30.91 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 220 KTLSKELEEEENMLKQCIEKLKSVEASRVALVSQL 254 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~L 254 (525)
....+.+......++.|.++|+...+.-..|++++
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455666666666677776665555444455443
No 249
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=30.65 E-value=2.7e+02 Score=29.02 Aligned_cols=89 Identities=8% Similarity=0.110 Sum_probs=44.1
Q ss_pred hhhhhhhcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 205 KDVDIACTNA--KDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEA 282 (525)
Q Consensus 205 K~vd~acs~~--~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra 282 (525)
++-...|... +.+ ...+.-+.++..+..+--...-+...++|..+++.|++.=+..+...-..+.+...+--.-+.+
T Consensus 179 ~e~~~v~e~~~~~~p-ispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 179 DEPQTVAEIPELKEP-ISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred ccchhhccCcccCCC-CCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3444455544 222 3444455555555555555556667778888888887753333332222222222222223344
Q ss_pred HHHHHhhcccCC
Q 009811 283 CNMRKRLNDEDY 294 (525)
Q Consensus 283 ~~lr~~Ld~~~~ 294 (525)
.++++|..++.+
T Consensus 258 ~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 258 AELKQKVMEHIH 269 (279)
T ss_pred HHHHHHHHHHHh
Confidence 455666555543
No 250
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.59 E-value=6.7e+02 Score=26.54 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhc
Q 009811 252 SQLKEALHEQESELENVRTQMQVAQAQAE--------EACNMRKRLN 290 (525)
Q Consensus 252 s~LkeAL~~qE~~lE~vr~~~q~aq~~~~--------ra~~lr~~Ld 290 (525)
+.|+..++.-+.+..+++..+++|+...+ ++..|+.+++
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555555556666666666666666554 5566665553
No 251
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=30.36 E-value=5.7e+02 Score=25.59 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009811 265 LENVRTQMQVAQAQAEEA 282 (525)
Q Consensus 265 lE~vr~~~q~aq~~~~ra 282 (525)
+......+..|+...+.+
T Consensus 146 L~kae~el~~a~~~Ye~l 163 (224)
T cd07591 146 LPRAEKELDEAKEVYETL 163 (224)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333443333333
No 252
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.24 E-value=4.6e+02 Score=24.50 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
+.+++...+.+.++..+++..+.+...=+..|+.=+...+..+...+..+.........+.+|-+|+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
No 253
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=30.14 E-value=3.3e+02 Score=30.40 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
+|++.+-.=+|+.-.-+++.+..|..|++.|+++-.+.|+.+++
T Consensus 16 eEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l 59 (436)
T PF01093_consen 16 EEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKL 59 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555556666667777777777665555554443
No 254
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=29.79 E-value=2.9e+02 Score=26.10 Aligned_cols=27 Identities=11% Similarity=0.243 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 267 NVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 267 ~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
.+..-+...+.+++|+..+.++++...
T Consensus 37 ~l~~H~~eT~~qi~rLe~if~~lg~~~ 63 (147)
T cd07909 37 AFESHLEETEGQVERLEQIFESLGEKP 63 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 333345567888899999999997653
No 255
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=29.73 E-value=69 Score=33.07 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=56.3
Q ss_pred hhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 009811 210 ACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRT--QMQVAQAQAEEACNMRK 287 (525)
Q Consensus 210 acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~--~~q~aq~~~~ra~~lr~ 287 (525)
.|+.....+...+..|++-.|+.+..+|+.|++-+-.-....+.|.+++.+.+..++..-. ....++-+.+++..+.-
T Consensus 144 ~Cs~E~f~k~g~~~~Em~~~Er~lD~~IdlLk~d~LdE~~~~~~L~r~i~~~~~l~~~~~~~~~~d~~~~~~~~~~~~~~ 223 (274)
T PF12455_consen 144 RCSVEQFLKMGGLYPEMEPVERALDSWIDLLKKDQLDENTCADELERSIAYFSHLAEVHLPEELEDCADELLDRASLLQS 223 (274)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHHHHHH
Confidence 3655434457788899999999999999999987777777888888888888777766522 22333444444444444
Q ss_pred hhc
Q 009811 288 RLN 290 (525)
Q Consensus 288 ~Ld 290 (525)
.||
T Consensus 224 ~ld 226 (274)
T PF12455_consen 224 ALD 226 (274)
T ss_pred HHH
Confidence 444
No 256
>PRK10203 hypothetical protein; Provisional
Probab=29.69 E-value=4.3e+02 Score=24.41 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=8.1
Q ss_pred HHHHHhhhccccc
Q 009811 107 RLVNIWDERRVFG 119 (525)
Q Consensus 107 Rll~IWeeR~VF~ 119 (525)
.+++.|-|++|=.
T Consensus 2 ~~~~~~~E~~I~e 14 (122)
T PRK10203 2 WLLDQWAERHILE 14 (122)
T ss_pred cHHHHHHHHHHHH
Confidence 4667777776543
No 257
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.08 E-value=6.5e+02 Score=25.89 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=12.9
Q ss_pred hhhHHHHHHHhhhhhhhhhc
Q 009811 193 CKSVVHRVKKMEKDVDIACT 212 (525)
Q Consensus 193 ~ksav~~~~~~eK~vd~acs 212 (525)
+..++..+.++++++..++.
T Consensus 62 f~~a~~~v~el~~~l~~a~~ 81 (291)
T PF10475_consen 62 FFQAMSSVQELQDELEEALV 81 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777776543
No 258
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=29.07 E-value=4.5e+02 Score=29.73 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhcc
Q 009811 276 QAQAEEACNMRKRLND 291 (525)
Q Consensus 276 q~~~~ra~~lr~~Ld~ 291 (525)
...+++++.|++.++.
T Consensus 477 ~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 477 DALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455667777766654
No 259
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=29.05 E-value=1.1e+03 Score=28.39 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhcc
Q 009811 21 QQCIETLSHWCIFHR 35 (525)
Q Consensus 21 QeSIqtlS~W~i~h~ 35 (525)
+.+|-.+-.||+.+.
T Consensus 36 KS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 36 KSNIVDAIRWVLGEQ 50 (1179)
T ss_pred hhHHHHHHHHHHcCC
Confidence 556666667787543
No 260
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=29.04 E-value=3.8e+02 Score=27.70 Aligned_cols=16 Identities=31% Similarity=0.142 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 009811 226 LEEEENMLKQCIEKLK 241 (525)
Q Consensus 226 Lee~e~~lke~IeqLe 241 (525)
|.++-..++++.-.|.
T Consensus 50 lke~L~n~RQ~e~fLr 65 (281)
T PF12018_consen 50 LKEELYNRRQYEIFLR 65 (281)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333345555555443
No 261
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.85 E-value=3e+02 Score=32.06 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=8.2
Q ss_pred ccccCCCCCCCCCCCCC-CCC
Q 009811 496 TMLTQQPPGPPSFRPLQ-PPG 515 (525)
Q Consensus 496 ~~~~~~~~~~~~~~~~q-~~g 515 (525)
|-.+|+|-+..-|.+|- |||
T Consensus 236 i~~pqmPlQ~gm~~~~~lpp~ 256 (728)
T KOG4592|consen 236 IYLPQMPLQQGMPHNFPLPPG 256 (728)
T ss_pred cccccChhhcCCCCCCCCCcc
Confidence 44444443333344444 444
No 262
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.72 E-value=4.8e+02 Score=31.05 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHE 260 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~ 260 (525)
...++.+|++.+..+.+..+.+++.......+...|++.+++
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665555555555555554444444444444444433
No 263
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.71 E-value=6.5e+02 Score=25.73 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVAL 250 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~L 250 (525)
.+.-+++.....+.++-.+++.....|..|
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~l 101 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDL 101 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444
No 264
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=28.66 E-value=3.6e+02 Score=28.69 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 220 KTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
..++++|++....+.. +.........|...+..|+.|...|++.... +.....|.+.+..+..++
T Consensus 278 ~~ll~~i~~~n~~f~~-~~~~~~~~~~re~~lq~L~~ay~~y~el~~n----l~eG~kFY~dL~~~~~~~ 342 (353)
T cd09236 278 EEILQQIEVANKAFLQ-SRKGDPATKERERALQSLDLAYFKYKEIVSN----LDEGRKFYNDLAKILSQF 342 (353)
T ss_pred HHHHHHHHHHHHHHHH-HHccChhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445555444433321 2233344557777777777777655554444 444455555544444443
No 265
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.50 E-value=6.2e+02 Score=25.42 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 009811 220 KTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEAL-HEQESELENVR 269 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL-~~qE~~lE~vr 269 (525)
+.|.+.|+.....+..|.++-+.+ ..|..-|+..-+|| .+-++++++..
T Consensus 60 gdLe~~Y~~ln~~ye~s~~~A~~V-~~RI~~vE~Va~ALF~EWe~EL~~Y~ 109 (201)
T PF11172_consen 60 GDLEDKYNALNDEYESSEDAAEEV-SDRIDAVEDVADALFDEWEQELDQYS 109 (201)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444443333222 23444444443333 22344444443
No 266
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=28.47 E-value=9.6e+02 Score=27.63 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALV-------SQLKEALHEQESE---LENV-------RTQMQVAQAQAEEACNMR 286 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Li-------s~LkeAL~~qE~~---lE~v-------r~~~q~aq~~~~ra~~lr 286 (525)
.++...+..+.++-+.|++.+.+|.... ..|+.+-+..+.. .+.| .+-+.-++.|-+++.+++
T Consensus 281 eel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~ 360 (570)
T COG4477 281 EELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELE 360 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 3444444555555666666666665443 3333332222222 2222 233555677777777777
Q ss_pred Hhhccc
Q 009811 287 KRLNDE 292 (525)
Q Consensus 287 ~~Ld~~ 292 (525)
.-+++-
T Consensus 361 ~~~~~i 366 (570)
T COG4477 361 SVLDEI 366 (570)
T ss_pred HHHHHH
Confidence 777654
No 267
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=28.45 E-value=6.2e+02 Score=25.41 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
..++++++.+...++.|..|+.++.+.+...
T Consensus 67 ~sl~ef~~~~~el~d~r~~L~~~~~~~l~~p 97 (207)
T cd07635 67 ASLQEFSNFLKNLEEQREIMALNVTETLIKP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777778888888876665544
No 268
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=28.35 E-value=2.2e+02 Score=28.92 Aligned_cols=36 Identities=25% Similarity=0.102 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 245 ASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 245 ~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
+.|..|-+.|-+|..+|-.--|-+|+.|.++++.-.
T Consensus 39 aVRkeiP~ALikaNKYYTAiAEI~RTVWdDVk~~~~ 74 (231)
T PF03238_consen 39 AVRKEIPGALIKANKYYTAIAEIVRTVWDDVKAVEA 74 (231)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456777789999999999999999999988766543
No 269
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=28.33 E-value=4.2e+02 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSV 243 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~ 243 (525)
...+.+++++....+.+.++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (181)
T PF12729_consen 77 RQEIEKEIDEARAEIDEALEEYEKL 101 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666777777777776666544
No 270
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.15 E-value=4.5e+02 Score=24.14 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHH
Q 009811 24 IETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLP 87 (525)
Q Consensus 24 IqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp 87 (525)
...+..|...+.....+|++...++|.+....-|+--|=++..++++. ..+|+....+.+.
T Consensus 22 ~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G---~~~f~~~~~~~~~ 82 (122)
T cd03572 22 YEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG---NSDFKRELQRNSA 82 (122)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC---CHHHHHHHHHhHH
Confidence 456778888877778899999999999877777777777776666652 3688888888765
No 271
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.08 E-value=4.5e+02 Score=27.83 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=19.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhc
Q 009811 8 QILAEKLSKLNCTQQCIETLSHWCIFH 34 (525)
Q Consensus 8 d~l~~kL~~Ln~SQeSIqtlS~W~i~h 34 (525)
|+|..=|.+|..|.+.|..+..=+..-
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~ 27 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEK 27 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999888877655544
No 272
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.97 E-value=3.4e+02 Score=26.52 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhc
Q 009811 276 QAQAEEACNMRKRLN 290 (525)
Q Consensus 276 q~~~~ra~~lr~~Ld 290 (525)
+..-|++..|..+||
T Consensus 147 k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 147 KTLRNKANWLESELE 161 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 273
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.97 E-value=4.9e+02 Score=32.71 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 255 KEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 255 keAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
++-+...+..+|..+.....+..-.+++..+|++|+..
T Consensus 514 ~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 514 EALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33344444444444444444455556667777777643
No 274
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=27.95 E-value=1.4e+03 Score=29.25 Aligned_cols=22 Identities=27% Similarity=0.108 Sum_probs=14.2
Q ss_pred CcCcccchhhhhHHHHHHhhhc
Q 009811 53 QLVQKVPLLYLANDILQNSKRK 74 (525)
Q Consensus 53 ~~~kKL~lLYLaNDVlQnSkrK 74 (525)
.-+.|.++.+=+-.+|+|...+
T Consensus 945 ~g~~k~~lp~n~~r~I~Na~~~ 966 (1605)
T KOG0260|consen 945 YGDAKWPLPENLQRIIWNALKK 966 (1605)
T ss_pred cCCcccccchhHHHHHHHHHhh
Confidence 3356666667777777776653
No 275
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=27.90 E-value=7.3e+02 Score=27.03 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 220 KTLSKELEEEENMLKQCIEKLKSVEASRVA--LVSQLKEALHEQESELENVRTQMQVAQAQAEE 281 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~~~~aR~~--Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~r 281 (525)
..++++++...+.+.+.-+++.....+-.. .++.|++.+..-...++.+...-.+++.|+..
T Consensus 289 ~~lL~Nle~lt~~LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D 352 (370)
T PLN03094 289 SGLLKEVEKLTRVAAEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFTGD 352 (370)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466666666666666665555544333333 44566666666666666666666666666654
No 276
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=27.68 E-value=4.3e+02 Score=28.09 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=2.3
Q ss_pred hhhhHH
Q 009811 192 RCKSVV 197 (525)
Q Consensus 192 k~ksav 197 (525)
+|.-++
T Consensus 164 RctvSL 169 (302)
T PF07139_consen 164 RCTVSL 169 (302)
T ss_pred HHHHHH
Confidence 343333
No 277
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.63 E-value=1e+03 Score=29.58 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 232 MLKQCIEKLKSVEASRVALVSQL 254 (525)
Q Consensus 232 ~lke~IeqLe~~~~aR~~Lis~L 254 (525)
.++.-|+.|++....|...++.|
T Consensus 485 el~~~iknlnk~L~~r~~elsrl 507 (1195)
T KOG4643|consen 485 ELLNQIKNLNKSLNNRDLELSRL 507 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333555555555665555544
No 278
>PLN03223 Polycystin cation channel protein; Provisional
Probab=27.57 E-value=1.2e+03 Score=30.11 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCc----------chhhHHHHHHHHhhhccccc-hhhHHHHHHhcCCCC
Q 009811 79 VTEFWKVLPAALKDVVENGDD----------SGKNVVSRLVNIWDERRVFG-SRARGVKDVMLGGEV 134 (525)
Q Consensus 79 ~~aF~~vLp~a~~~v~~~~d~----------~~kkkV~Rll~IWeeR~VF~-~~i~~Lke~llg~~~ 134 (525)
++.|-.+|.++|..+.....+ -.+++.+.+|+=|-.++..+ .++..+.....|+++
T Consensus 1411 LNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~rfrslL~g~~~~~~i~~~~~~~~lr~w~ge~~ 1477 (1634)
T PLN03223 1411 FNFLLAIICDAFGEVKANAAETVSVHTELFPMLRDKWRSMFKGWFYKNHIPEARVRRQLRIWKGENP 1477 (1634)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhhhcccccCCcHHHHHHHHHhcCCCC
Confidence 455556666666666432111 12566666664444433333 336555556677754
No 279
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=27.55 E-value=2.1e+02 Score=30.16 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 233 LKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNM 285 (525)
Q Consensus 233 lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~l 285 (525)
+.++++.|+..+..-.++-+.+..-++...++++.+......+++.++++...
T Consensus 20 i~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 20 ILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555554455555556666666666666666666666666666655544
No 280
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.53 E-value=4.1e+02 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLK 241 (525)
Q Consensus 225 eLee~e~~lke~IeqLe 241 (525)
..+++...+++-++.++
T Consensus 60 ~~~ea~~~Le~~~e~le 76 (105)
T cd00632 60 EKEEARTELKERLETIE 76 (105)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 281
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.43 E-value=6.1e+02 Score=25.00 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRV 248 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~ 248 (525)
...+.+-|+.++..+.+.-..|......+.
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~ 86 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQ 86 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555565555555555555554444443
No 282
>PF14515 HOASN: Haem-oxygenase-associated N-terminal helices; PDB: 3BJD_B.
Probab=27.38 E-value=1e+02 Score=26.54 Aligned_cols=33 Identities=33% Similarity=0.272 Sum_probs=25.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhc
Q 009811 323 IAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNA 356 (525)
Q Consensus 323 ~aa~va~klaassss~~~l~svlss~aae~a~~~ 356 (525)
+|+-||+-|+.+.|+-|| ++.+|.++|=-+++-
T Consensus 18 ~a~i~AdAL~~~At~~Qi-~~A~~al~A~t~kgL 50 (93)
T PF14515_consen 18 EARIVADALAPHATLRQI-TSAASALAALTEKGL 50 (93)
T ss_dssp HHHHHHHHTSTT--HHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHH-HHHHHHHHHHHHhhc
Confidence 677899999999999997 577888888777654
No 283
>PHA02557 22 prohead core protein; Provisional
Probab=27.21 E-value=7.4e+02 Score=25.94 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQ---MQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~---~q~aq~~~~ra~~lr~~L 289 (525)
...++..|..+ .|..+++.--+.|. +.+.+.+.++ +.--..|.+++..+.+..
T Consensus 164 n~~l~e~i~~~-----~r~~i~~e~t~gLt--dsQkeKv~~L~Egvef~e~F~~kl~~i~E~v 219 (271)
T PHA02557 164 NVALEEYINEV-----KREVILSEVTKDLT--ESQKEKVASLAEGLEFSETFSKKLTAIVEMV 219 (271)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHcchh--HHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 34445555444 24444444333332 2333444444 233477888877776655
No 284
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.14 E-value=2.2e+02 Score=28.68 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 233 LKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 233 lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
+.++-.+|+.....+..|.+.|+++- ..++.+ .+...+..++..++.+..-++.|++.+
T Consensus 134 y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l-~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLLELLEKAK-TVEDLL-EIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445444445555566665553 223333 344455567888888888777887764
No 285
>PRK10869 recombination and repair protein; Provisional
Probab=26.94 E-value=9.8e+02 Score=27.23 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 009811 244 EASRVALVSQLKEALHEQESELENVRTQ-MQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 244 ~~aR~~Lis~LkeAL~~qE~~lE~vr~~-~q~aq~~~~ra~~lr~~L 289 (525)
+.....|...++++...+...-+.+... ...|..+...+..-.+.|
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444444444443333333322 233455555555554444
No 286
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.92 E-value=5e+02 Score=32.36 Aligned_cols=11 Identities=18% Similarity=0.444 Sum_probs=5.7
Q ss_pred HHHHHHHhhcc
Q 009811 281 EACNMRKRLND 291 (525)
Q Consensus 281 ra~~lr~~Ld~ 291 (525)
|+.+++.+|..
T Consensus 152 ~l~~i~~~L~~ 162 (1109)
T PRK10929 152 QLNEIERRLQT 162 (1109)
T ss_pred HHHHHHHHHhC
Confidence 44455555544
No 287
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=26.87 E-value=5.8e+02 Score=31.23 Aligned_cols=13 Identities=15% Similarity=0.067 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCC
Q 009811 383 PEKQTAVSDPNMF 395 (525)
Q Consensus 383 ~e~~~~~~~~~~~ 395 (525)
.|++...|.++..
T Consensus 160 nEsDSDSSAqq~~ 172 (982)
T PF03154_consen 160 NESDSDSSAQQQS 172 (982)
T ss_pred cccCccccccCCC
Confidence 5666554443333
No 288
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.84 E-value=9.9e+02 Score=28.80 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQ--------ESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q--------E~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
.+.+++.|.-....++.-|+.+|-..+.-.+++..+.+++... ..+.|.........++-.++...|-++|+
T Consensus 300 ~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~~~~~~~~~~aLv~~l~ 379 (1104)
T COG4913 300 QETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRTISTARAGLDALVKGLG 379 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 3455666666777788888888766666566666665554433 22222222222222334455566677776
Q ss_pred cc
Q 009811 291 DE 292 (525)
Q Consensus 291 ~~ 292 (525)
+.
T Consensus 380 ~a 381 (1104)
T COG4913 380 GA 381 (1104)
T ss_pred CC
Confidence 54
No 289
>PHA03247 large tegument protein UL36; Provisional
Probab=26.78 E-value=1.3e+03 Score=31.89 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.6
Q ss_pred HHHHHh
Q 009811 350 AQEAKN 355 (525)
Q Consensus 350 ae~a~~ 355 (525)
+||..+
T Consensus 2540 lEe~as 2545 (3151)
T PHA03247 2540 LEELAS 2545 (3151)
T ss_pred hhhhhh
Confidence 355443
No 290
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=26.77 E-value=1.9e+02 Score=29.89 Aligned_cols=117 Identities=12% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCCCCCHHHHHHHHhhccCCHHHHHHHHHHHHhccc---------------------chHHHHHHHHHHHhc-CCcCccc
Q 009811 1 MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRS---------------------KAELVVATWDKQFHS-SQLVQKV 58 (525)
Q Consensus 1 m~~~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k---------------------~A~~IV~~W~k~l~k-s~~~kKL 58 (525)
|++.=+.+.+.+.|.+---+++.|.+.-.|+-+.-. .-..|.+.|.+.-.. ...+=||
T Consensus 6 L~d~~s~~eV~~~L~~agi~~~~i~~F~~~V~~yN~~v~~~~l~~gF~~~~~~~~~Yd~~~i~~~W~~k~~~f~g~NCRi 85 (250)
T PF14133_consen 6 LVDKESQEEVKKALKSAGISKENIDNFFEWVNDYNQTVKNTLLTGGFTTIDKKKPDYDQFKIQDKWEKKNGDFIGTNCRI 85 (250)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcCcccCCceECCccCCCccHHHHHHHHHhhCCCccccchhh
Confidence 344456778888888778899999999999987532 112477788775432 3566788
Q ss_pred chhhhhHHHHHHhhhcC--hhh------------HHHHHHHHHHHHHHHhh----cCCcchhhHHHHHHHHhhhccc
Q 009811 59 PLLYLANDILQNSKRKG--NEF------------VTEFWKVLPAALKDVVE----NGDDSGKNVVSRLVNIWDERRV 117 (525)
Q Consensus 59 ~lLYLaNDVlQnSkrKg--~eF------------~~aF~~vLp~a~~~v~~----~~d~~~kkkV~Rll~IWeeR~V 117 (525)
+-+.|+.|.|.-..... .++ ...|-..=.+.|..++. ....+.+..+..|.+-|++|+|
T Consensus 86 TaF~L~kd~I~~~~~~~~d~~~Lf~D~eai~~~p~~~f~~~d~~~F~~lFs~i~t~~t~D~~~h~~~i~k~wk~rgi 162 (250)
T PF14133_consen 86 TAFTLLKDLITVKNSEDKDDEYLFFDLEAIDNNPKKLFTDEDKEKFTTLFSRIPTENTKDIKVHAEKIQKYWKERGI 162 (250)
T ss_pred hHHHHhhcceecCCCCCCCccceeccHHHHhcCchhhCCHHHHHHHHHHhCcCCccccCCHHHHHHHHHHHHHHcCc
Confidence 88888888887655321 111 12233333444555543 1234567889999999999998
No 291
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=26.60 E-value=5.2e+02 Score=23.97 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhcccCCC
Q 009811 276 QAQAEEACNMRKRLNDEDYV 295 (525)
Q Consensus 276 q~~~~ra~~lr~~Ld~~~~~ 295 (525)
+...+++.++|..|+.-...
T Consensus 108 ~~iY~~L~~ik~~LE~L~lT 127 (134)
T PF10303_consen 108 QPIYDQLIDIKNTLENLLLT 127 (134)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 44567777777777765433
No 292
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=26.47 E-value=5.7e+02 Score=24.38 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccc
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRT----QMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~----~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
-|...|+.....++.+-. ++. ......++..++..+.....++..++. ....++...|++.+||.-|+.+
T Consensus 35 LF~~Qf~~t~~~~r~~~~-~r~-~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~e 108 (146)
T PF05852_consen 35 LFRAQFQFTKKSLRSHNS-LRE-ECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEFE 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332 111 123344444444444444444444322 2445567778888888888665
No 293
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=26.25 E-value=5.8e+02 Score=24.38 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVAL-----VSQLKEALHEQESELENVRTQMQVAQAQAEEAC 283 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~L-----is~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~ 283 (525)
..++.+.+..+.+.+.+|-.....+.+| ...|.+.+...|..+...|...+++-...|+.+
T Consensus 87 ~~~~~~~~~~l~~al~~l~~~~e~yP~Lka~~~~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i 152 (186)
T PF04011_consen 87 IQEFQQAEAELSQALSRLLAVVENYPELKADENFQQLMAQLEETENRIAAARRAYNDAVRDYNTAI 152 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777 445566666666666666655555544444443
No 294
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=26.17 E-value=5.7e+02 Score=26.19 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009811 239 KLKSVEASRVALVSQL 254 (525)
Q Consensus 239 qLe~~~~aR~~Lis~L 254 (525)
.|.+....-..++..|
T Consensus 186 ~l~~~l~~~~~vl~~l 201 (318)
T TIGR00383 186 ALRRSLWPLRDVLNFL 201 (318)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3443333334444444
No 295
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=26.14 E-value=6e+02 Score=24.50 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=48.5
Q ss_pred chhhhHHHHHHHhhhcccHHHHHHhhhhHHHH-HHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 168 AAEKIVSAYHLVLCEQLSEEEEMARCKSVVHR-VKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEAS 246 (525)
Q Consensus 168 ~~ekivsa~q~l~~~~~~e~~~l~k~ksav~~-~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~a 246 (525)
+-..|..|-|.+-. +.-+.|...+++++. |-++.+.++. ....+ ..--+||+.-+....+++... +.--.
T Consensus 23 L~~ei~kA~q~~~s---nnt~~mqsa~~sL~~Ki~ei~~kL~~-Fn~dK----ea~F~eLq~tr~~I~eFi~~~-K~Npn 93 (157)
T PF04778_consen 23 LDKEIQKANQAVAS---NNTASMQSAKSSLDAKITEITKKLEK-FNKDK----EAKFNELQQTRKQIDEFINKN-KNNPN 93 (157)
T ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH----HHHHHHHHHHHHHHHHHHhhc-cCCcc
Confidence 44566666665544 445678888887763 6666666653 11111 223456666667777777766 34446
Q ss_pred HHHHHHHHHHHHH
Q 009811 247 RVALVSQLKEALH 259 (525)
Q Consensus 247 R~~Lis~LkeAL~ 259 (525)
+..||..|.....
T Consensus 94 Y~~li~~Lt~~kd 106 (157)
T PF04778_consen 94 YAELIKKLTQKKD 106 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777755533
No 296
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=26.00 E-value=2.7e+02 Score=26.07 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 232 MLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVA 275 (525)
Q Consensus 232 ~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~a 275 (525)
.|.+..++|..++..|............+.+.++++++.++..+
T Consensus 25 ~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~ 68 (135)
T PRK10947 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD 68 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555666555555555555555566665555443
No 297
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.82 E-value=3.5e+02 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRV 248 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~ 248 (525)
.|.+.|.++.+.+.-+.++|++..+.|.
T Consensus 546 slekql~~ErklR~~~qkr~kkEkk~k~ 573 (641)
T KOG3915|consen 546 SLEKQLAMERKLRAIVQKRLKKEKKAKR 573 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555444444
No 298
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=25.81 E-value=7.1e+02 Score=25.23 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=42.6
Q ss_pred hhHHHHHHHhhhcccHHHHHHhhhhHHH-HHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 171 KIVSAYHLVLCEQLSEEEEMARCKSVVH-RVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVA 249 (525)
Q Consensus 171 kivsa~q~l~~~~~~e~~~l~k~ksav~-~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~ 249 (525)
.+..+.|.+.+.+. .|+..+.... .+.+++|+-=+ |..+ |. .....|+.++..|...++.|..
T Consensus 20 ~~~~~~~~~~~a~~----~ls~a~~~~~~~l~~~~~~~f~-~~~d-De----------~i~~~L~kFs~~L~El~~~~~~ 83 (215)
T cd07631 20 QLFQAMHRIYDAQN----ELSAATHLTSKLLKEYEKQRFP-LGGD-DE----------VMSSTLQQFSKVIDELSSCHAV 83 (215)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCC-cCCC-cH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555333 3444444433 24566665322 2221 22 1345667777777777788999
Q ss_pred HHHHHHHHHHHH
Q 009811 250 LVSQLKEALHEQ 261 (525)
Q Consensus 250 Lis~LkeAL~~q 261 (525)
|+++..+.+...
T Consensus 84 L~~q~~~sl~~p 95 (215)
T cd07631 84 LSTQLADAMMFP 95 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999888776655
No 299
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=25.80 E-value=7.1e+02 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe 241 (525)
...+..++.+.++...++-..++
T Consensus 161 ~~~~~~ev~~~e~~~~~a~~~fe 183 (234)
T cd07664 161 LQQAKDEIKEWEAKVQQGERDFE 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444444443
No 300
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.75 E-value=9.1e+02 Score=29.27 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
...+.+++.+..+.+.+.-.++.+-...-..++...+.+-...+.+-+...++.++..-.-.++.++++|+...+
T Consensus 794 v~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~ 868 (970)
T KOG0946|consen 794 VIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN 868 (970)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh
Confidence 445555666666667766666666666666677777776666677767777777666666667777887776543
No 301
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.74 E-value=1.2e+03 Score=29.30 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 173 VSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVS 252 (525)
Q Consensus 173 vsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis 252 (525)
+.....+.......+.........-..++.++.++...-+ +.....+.++++..+..++.+...++.....+..+-.
T Consensus 781 ~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~---~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~ 857 (1311)
T TIGR00606 781 EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL---DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE 857 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 253 QLKEA---LHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 253 ~LkeA---L~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.|+++ +...+.+...+...++.-...-.++.++...+..
T Consensus 858 eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~ 899 (1311)
T TIGR00606 858 QIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 302
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.64 E-value=9.4e+02 Score=26.61 Aligned_cols=6 Identities=0% Similarity=0.252 Sum_probs=2.3
Q ss_pred HHHhhh
Q 009811 189 EMARCK 194 (525)
Q Consensus 189 ~l~k~k 194 (525)
.|.++.
T Consensus 256 ~L~~l~ 261 (562)
T PHA02562 256 ALNKLN 261 (562)
T ss_pred HHHHHH
Confidence 344333
No 303
>PF14361 RsbRD_N: RsbT co-antagonist protein rsbRD N-terminal domain
Probab=25.49 E-value=2.4e+02 Score=24.54 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHHHHHHHH---hhcCCcchhhHHHHHHHHh
Q 009811 36 SKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDV---VENGDDSGKNVVSRLVNIW 112 (525)
Q Consensus 36 k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a~~~v---~~~~d~~~kkkV~Rll~IW 112 (525)
++-+.|++.|.+.+..+...+. ..+..... ..|...|...|..++... .......++.-+.+|..+.
T Consensus 8 ~~~~~Il~~W~~~~~~~~~~~~-------~~~~~~el---~~~~~~v~~~l~~~l~~~~d~~~~~~~~l~~~L~~lsr~R 77 (105)
T PF14361_consen 8 EHREAILDRWLEAVLASYPSRT-------DRFSEKEL---RQFANPVLDALAAALESGLDLAAPEWEELREALEELSRIR 77 (105)
T ss_pred HhHHHHHHHHHHHHHHhccccc-------ccccHHHH---HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 4556999999998865322211 11111111 233344444444444333 2223356788899999988
Q ss_pred hhccccchhh----HHHHHHhc
Q 009811 113 DERRVFGSRA----RGVKDVML 130 (525)
Q Consensus 113 eeR~VF~~~i----~~Lke~ll 130 (525)
.-.++=+.++ -.||+.+.
T Consensus 78 A~Qgftpseta~fvf~LK~~l~ 99 (105)
T PF14361_consen 78 AVQGFTPSETASFVFALKRPLF 99 (105)
T ss_pred HhCCCCHHHHHHHHHHHHHHHH
Confidence 8888766653 55666553
No 304
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=5.4e+02 Score=23.73 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 246 SRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACN 284 (525)
Q Consensus 246 aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~ 284 (525)
++..+++.|++=++..|-..++++.+....+...+++..
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666666666653
No 305
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=25.39 E-value=4.7e+02 Score=28.56 Aligned_cols=44 Identities=32% Similarity=0.354 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENML----KQCIEKLKSVEASRVALVSQLKEALHEQE 262 (525)
Q Consensus 219 ~~~l~keLee~e~~l----ke~IeqLe~~~~aR~~Lis~LkeAL~~qE 262 (525)
+..+..-||-....| .--|++.++.+.+..+|-..|++--...|
T Consensus 137 GDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 137 GDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 44455666677777777777765444443
No 306
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=25.37 E-value=3.3e+02 Score=28.86 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 243 VEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 243 ~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
....|.+.+..|+.|...|++....+..-.+=|..+.+.+.+++++-.+
T Consensus 286 ~~~~re~~l~~L~~ay~~y~el~~~l~eG~kFY~dL~~~~~~l~~~~~~ 334 (339)
T cd09238 286 WRAATESHATQIRAAVAKYRELREGMEEGLRFYSGFQEAVRRLKQECED 334 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666555554444444444444444444455444443
No 307
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=25.30 E-value=7.2e+02 Score=25.17 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVAL-VSQLKEALHEQESELE 266 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~L-is~LkeAL~~qE~~lE 266 (525)
.-.|++.++....+|.+.....+.....- ++.++....+.+.+++
T Consensus 155 ~~eE~~~A~~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~ 200 (223)
T cd07615 155 PDEEIRQAVEKFEESKELAERSMFNFLENDVEQVSQLSVLIEAALD 200 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 35566666666666666555444443333 3344444444444333
No 308
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=25.28 E-value=7.1e+02 Score=25.08 Aligned_cols=12 Identities=0% Similarity=0.230 Sum_probs=5.0
Q ss_pred HHHhhhhHHHHH
Q 009811 189 EMARCKSVVHRV 200 (525)
Q Consensus 189 ~l~k~ksav~~~ 200 (525)
.|.+|..+..+|
T Consensus 89 aL~~~g~a~~kI 100 (223)
T cd07592 89 ALVEVGEALKQL 100 (223)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 309
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=1e+03 Score=26.89 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhcCCcCcc-----------cchhhhhHHHHHHhhhcC
Q 009811 38 AELVVATWDKQFHSSQLVQK-----------VPLLYLANDILQNSKRKG 75 (525)
Q Consensus 38 A~~IV~~W~k~l~ks~~~kK-----------L~lLYLaNDVlQnSkrKg 75 (525)
-+.||+...++|...++... -..|-|+|+|-|.|+.-|
T Consensus 30 teqvveavvrcL~~Idps~q~~~s~llp~am~~Rfrla~siAq~ckdlg 78 (521)
T KOG1937|consen 30 TEQVVEAVVRCLWKIDPSKQTISSYLLPKAMTTRFRLANSIAQYCKDLG 78 (521)
T ss_pred HHHHHHHHHHHHHhcCccccccccccCchHHHHHHHHHHHHHHHHHHcC
Confidence 35677777777665333322 124678999999999754
No 310
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=1e+03 Score=28.23 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=58.1
Q ss_pred chhhhHHHHHHHhhhc-ccHHHHHHhhhhHHHH----HHHhhhhhh---hhhc---CCCCcchhHHHHHHHHHHHHHHHH
Q 009811 168 AAEKIVSAYHLVLCEQ-LSEEEEMARCKSVVHR----VKKMEKDVD---IACT---NAKDPKRKTLSKELEEEENMLKQC 236 (525)
Q Consensus 168 ~~ekivsa~q~l~~~~-~~e~~~l~k~ksav~~----~~~~eK~vd---~acs---~~~d~r~~~l~keLee~e~~lke~ 236 (525)
.-++++..||.+-+.. .|.++.+..|.-.+.. .|+|..++- .|.. .+..+.++.+++-|+++-..+.++
T Consensus 158 ~d~~v~~e~q~~s~~Eeed~eal~~ta~~~igeaeaFaE~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~ 237 (867)
T KOG2148|consen 158 GDLKVVVEYQLVSQAEEEDMEALLGTAVLGIGEAEAFAERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDM 237 (867)
T ss_pred cchhhhhhhhhcchhhhhhHHHHHhHHhhchhhHHHHHHHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 3457889998765532 3444455556554433 455555433 2211 122344566666666665555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
-+.| +.++.++...|+-.+.-|++=-.+.-+-.+-+...+++..+-.+|+
T Consensus 238 e~~L----d~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~ 287 (867)
T KOG2148|consen 238 EEWL----DSYEDILRHVREDIESIEEKNNLIEMQNVNNKKLIEELDKVINRLD 287 (867)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHhcccchhhhhccchHHHHHHHHHHHHhcc
Confidence 4444 3555555566655555544332222222222333344444444444
No 311
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.17 E-value=4.2e+02 Score=22.36 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=22.6
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSK-ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 219 ~~~l~k-eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
|+.|+. ..++....+++-++.++. .|+.|+..+...+.+++..+..
T Consensus 52 G~~fv~~~~~~~~~~L~~~~~~~~~-------~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 52 GKMFVKQDKEEAIEELEERIEKLEK-------EIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp TTEEEEEEHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 555555555555554443 3445555555555555444433
No 312
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=25.08 E-value=3.6e+02 Score=27.36 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 246 SRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 246 aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
.-..++..+.+++....+..+.+..........++.+.+.+..|.
T Consensus 189 ~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~ 233 (291)
T TIGR00996 189 DIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALD 233 (291)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 334445555555555555555555555555555555554444443
No 313
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.98 E-value=1e+03 Score=28.63 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=41.2
Q ss_pred hhhHHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhh-hhhcCCCCc---chhHHHHHHHHHHHH---HHHHHHHHHH
Q 009811 170 EKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVD-IACTNAKDP---KRKTLSKELEEEENM---LKQCIEKLKS 242 (525)
Q Consensus 170 ekivsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd-~acs~~~d~---r~~~l~keLee~e~~---lke~IeqLe~ 242 (525)
-+|.-|+|+|..+..-.--.|.-..-.+..-++.+|.-+ ..|..+-.. ....|.+.|+|..+- |+...+.|-+
T Consensus 383 ~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk 462 (861)
T PF15254_consen 383 VEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLK 462 (861)
T ss_pred hhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 356667776666433111111111222222344444444 355543111 134455545444333 3333444544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 243 VEASRVALVSQLKEALHEQESELENV 268 (525)
Q Consensus 243 ~~~aR~~Lis~LkeAL~~qE~~lE~v 268 (525)
+++.-..--..|.+++.+.+.++.+-
T Consensus 463 ~~e~q~~Enk~~~~~~~ekd~~l~~~ 488 (861)
T PF15254_consen 463 VIENQKEENKRLRKMFQEKDQELLEN 488 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444333
No 314
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.79 E-value=4.7e+02 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe 241 (525)
.....|++....+...|+.|+
T Consensus 63 ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 63 EARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 315
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=24.78 E-value=1.7e+02 Score=27.53 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH-HhcCCcCcc------cchhhhhHHHHHHhhh--c---Chh-hHHHHHHHHHH
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQ-FHSSQLVQK------VPLLYLANDILQNSKR--K---GNE-FVTEFWKVLPA 88 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~-l~ks~~~kK------L~lLYLaNDVlQnSkr--K---g~e-F~~aF~~vLp~ 88 (525)
..|+.+..+|-.+..-.-.+-+-|.+. ..+.+..++ =.+|+++|.|+..+=. . ... ..-=|-.+|-.
T Consensus 3 p~vqefk~lIe~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~~~~~~~glvG~P~naiLdw 82 (141)
T PF12588_consen 3 PVVQEFKDLIESDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFSDANEPVGLVGFPMNAILDW 82 (141)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCcccccCCCCCccccChHHHHHh
Confidence 467788887776644333333333331 111222222 3579999999986321 1 000 00011112221
Q ss_pred HHHHH--hh-cCCcchhhHHHHHHHHhhh
Q 009811 89 ALKDV--VE-NGDDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 89 a~~~v--~~-~~d~~~kkkV~Rll~IWee 114 (525)
....- |. -.++.+..++++||+.|.+
T Consensus 83 pM~T~sG~a~F~~p~vN~~lK~ILn~W~~ 111 (141)
T PF12588_consen 83 PMGTPSGYAFFLDPDVNAQLKKILNEWGE 111 (141)
T ss_pred hccChHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 11100 00 1378899999999999973
No 316
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.70 E-value=7.6e+02 Score=25.21 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
.+..+++........+-+.+......+..-...+...+...+.++..++..+.......+.+.+++-.||
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333443333333333333333333334444444444555555555555555444444455555555554
No 317
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.70 E-value=6.8e+02 Score=28.76 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=4.8
Q ss_pred HHHHHhhhhhh
Q 009811 198 HRVKKMEKDVD 208 (525)
Q Consensus 198 ~~~~~~eK~vd 208 (525)
.++.+++.++.
T Consensus 220 ~ri~~LEedi~ 230 (546)
T PF07888_consen 220 QRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 318
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.66 E-value=4.7e+02 Score=22.77 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009811 220 KTLSKELEEEENMLKQCIEKLKS 242 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~ 242 (525)
...+++|+.....++.++.++..
T Consensus 48 ~~~~~~l~~k~~~l~~~l~~Id~ 70 (99)
T PF10046_consen 48 EKNLEDLNQKYEELQPYLQQIDQ 70 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 319
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=24.58 E-value=6.7e+02 Score=27.03 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQL----KEALHEQESELENVRTQMQVAQA 277 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~L----keAL~~qE~~lE~vr~~~q~aq~ 277 (525)
+.+..+.-++.|.++||+.+.....+-..| --.|++-+.++...+.++..++.
T Consensus 152 enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 152 ENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 333334444555566665555555554444 45577777777777666655543
No 320
>COG3935 DnaD Putative primosome component and related proteins [DNA replication, recombination, and repair]
Probab=24.51 E-value=1.9e+02 Score=29.73 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHhhhccccchh-hHHH
Q 009811 101 GKNVVSRLVNIWDERRVFGSR-ARGV 125 (525)
Q Consensus 101 ~kkkV~Rll~IWeeR~VF~~~-i~~L 125 (525)
.-+=|.+||..|++++|=.-+ +..-
T Consensus 178 n~~YI~~IL~nW~k~gvkTv~dv~~~ 203 (246)
T COG3935 178 NFKYIDAILRNWKKNGVKTVEDVRAR 203 (246)
T ss_pred cHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 345689999999999999855 5333
No 321
>PRK09039 hypothetical protein; Validated
Probab=24.49 E-value=8.8e+02 Score=25.87 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQ-AEEACNMRKRL 289 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~-~~ra~~lr~~L 289 (525)
..|+.=|+.|+.....=+..|+.+++...+.+.+++.++..++.+-+. +.++..+|..+
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444555555555555555555555666666667777666666544 55555555444
No 322
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=24.43 E-value=1e+03 Score=30.15 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 261 QESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 261 qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
......++.....++.+.++.+..+|+...+
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 3344444455555556666655555555443
No 323
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.14 E-value=8.4e+02 Score=25.53 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHhhhcChhhHHHHHHHHHHHHHHHhhcCCcch-hhHHHHHHHHhhhccccchhhHHHHHHhcCCCCCCCccccccC
Q 009811 66 DILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSG-KNVVSRLVNIWDERRVFGSRARGVKDVMLGGEVPPPLEFSGKK 144 (525)
Q Consensus 66 DVlQnSkrKg~eF~~aF~~vLp~a~~~v~~~~d~~~-kkkV~Rll~IWeeR~VF~~~i~~Lke~llg~~~p~~l~~~~kk 144 (525)
||..||+=++..|+..|-.+|-.++.......-... ..+|..++++-.+=.=-.-++.+||..|..
T Consensus 111 DIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~E------------- 177 (269)
T PF05278_consen 111 DIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEE------------- 177 (269)
T ss_pred cHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------------
Q ss_pred CCCcccccccCCccccccccCCCchhhhHHHHHHHhhhcccHHHHHHhhhhHHHHHH-HhhhhhhhhhcCCCCcchhHHH
Q 009811 145 RSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVK-KMEKDVDIACTNAKDPKRKTLS 223 (525)
Q Consensus 145 ~~~~~k~~~~ds~~~~~k~~~g~~~ekivsa~q~l~~~~~~e~~~l~k~ksav~~~~-~~eK~vd~acs~~~d~r~~~l~ 223 (525)
+.......+.+..-+.+...+..-+...+ +++...++ .....
T Consensus 178 ----------------------------i~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~Ee---------L~~~E 220 (269)
T PF05278_consen 178 ----------------------------ILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEE---------LKQKE 220 (269)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
+++.+....+.+|-++|-..+.-|.+|-..+..+-...+.
T Consensus 221 ke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 221 KEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 324
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=23.99 E-value=1.2e+03 Score=28.47 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=47.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHH--Hh--ccc-------chHHHHHHHHHHHhcCCcCcccchhhhhHH---HHHHhhhc-
Q 009811 10 LAEKLSKLNCTQQCIETLSHWC--IF--HRS-------KAELVVATWDKQFHSSQLVQKVPLLYLAND---ILQNSKRK- 74 (525)
Q Consensus 10 l~~kL~~Ln~SQeSIqtlS~W~--i~--h~k-------~A~~IV~~W~k~l~ks~~~kKL~lLYLaND---VlQnSkrK- 74 (525)
.-+.+.++.+..+.++++..|- +. -++ .|+.+.....-.+++.--.-++.+.||-|= |++-||..
T Consensus 944 aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~eava~~ckgs~ 1023 (1243)
T COG5290 944 AYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFNLCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVAMDCKGSE 1023 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHHHHHHHHccccc
Confidence 3455666777778888888883 31 122 123333323334455555677999999984 67776632
Q ss_pred C-hhhHHHHHHHHHHHHHHH
Q 009811 75 G-NEFVTEFWKVLPAALKDV 93 (525)
Q Consensus 75 g-~eF~~aF~~vLp~a~~~v 93 (525)
. ..|+.+....+.+..++.
T Consensus 1024 y~ea~~~a~~s~~~e~~k~~ 1043 (1243)
T COG5290 1024 YREAFCEAMVSRLVESEKHY 1043 (1243)
T ss_pred chHHHHHHHHhhhhhHHHHh
Confidence 2 345555455555555543
No 325
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=23.90 E-value=8.6e+02 Score=25.55 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=16.6
Q ss_pred HHHhhhhHHHHHHHhhhhhh
Q 009811 189 EMARCKSVVHRVKKMEKDVD 208 (525)
Q Consensus 189 ~l~k~ksav~~~~~~eK~vd 208 (525)
.|.||+.....++++-++..
T Consensus 215 LMAKCR~L~qENeElG~q~s 234 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQAS 234 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 58899999988888887764
No 326
>cd08802 Death_UNC5B Death domain found in Uncoordinated-5B. Death Domain (DD) found in Uncoordinated-5B (UNC5B). UNC5B is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5B signaling is involved in the netrin-1-induced proliferation and migration of renal proximal tubular cells. It is also required for vascular patterning during embryonic development, and its activation inhibits sprouting angiogenesis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activatio
Probab=23.84 E-value=70 Score=27.63 Aligned_cols=27 Identities=7% Similarity=0.299 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhccccchhhHHHHHHhc
Q 009811 104 VVSRLVNIWDERRVFGSRARGVKDVML 130 (525)
Q Consensus 104 kV~Rll~IWeeR~VF~~~i~~Lke~ll 130 (525)
-...||+.||-|+..+..+.+|.+.+.
T Consensus 45 PT~~LLd~WE~~~~~~~~v~~L~~~L~ 71 (84)
T cd08802 45 PTGVILDLWEARHQDDGDLNSLASALE 71 (84)
T ss_pred cHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 467899999999998888999988774
No 327
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.82 E-value=5.9e+02 Score=23.64 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHhhhhHHHH----HHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 189 EMARCKSVVHR----VKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSV 243 (525)
Q Consensus 189 ~l~k~ksav~~----~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~ 243 (525)
-|..|..+|.. +.+.-|+||.. ...+...+.++.+....+.++|+++
T Consensus 39 HL~~cA~~Va~~Q~~L~~riKevd~~--------~~~l~~~~~erqk~~~k~ae~L~kv 89 (131)
T PF10158_consen 39 HLNQCAEAVAFDQNALAKRIKEVDQE--------IAKLLQQMVERQKRFAKFAEQLEKV 89 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665532 34555667632 4456677777777777777766653
No 328
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.79 E-value=2.8e+02 Score=31.19 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred HhhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 179 VLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEA 257 (525)
Q Consensus 179 l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeA 257 (525)
|++..+++....++..-.-.+..++||+++ .+-.|++...+.+.+..++|++.+.....|-++++.+
T Consensus 57 vV~~~FddkVnqSALteqQ~kasELEKqLa------------aLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 57 VVDTTFDDKVRQHATTEMQVTAAQMQKQYE------------EIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 329
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=23.67 E-value=6e+02 Score=28.36 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccc
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQ--AQAEEACNMRKRLNDE 292 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq--~~~~ra~~lr~~Ld~~ 292 (525)
+.-..+|||+.=..|+++..++.+.++..+.=.+.||+--.-.|++|..+..++|+-. .+--...+|.++|+..
T Consensus 158 rrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe~e~qELeqkleag 233 (558)
T PF15358_consen 158 RRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAEWQELEQKLEAG 233 (558)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHhhh
Confidence 5677889999999999999999988888887777887776777888888888877642 2234566788888764
No 330
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.66 E-value=4.5e+02 Score=26.66 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 226 LEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 226 Lee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
|++....+++-.+.|++ .-++....|+.+-...+...++.....+++..-.+...+||.+++...
T Consensus 149 ~~~~~~~~~~~~~kL~~---el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLET---ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred hhhhHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 44444444444444443 333445678888888888888888888888888888889999987653
No 331
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.65 E-value=5.4e+02 Score=29.88 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKL 240 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqL 240 (525)
.|+.+||...---..+|.+|
T Consensus 211 ~ll~~we~~~yf~ds~~~ql 230 (757)
T KOG4368|consen 211 RLLQLWEKNGYFDDSIIQQL 230 (757)
T ss_pred HHHHHHhhcCchhHHHHHHh
Confidence 44444444333333333333
No 332
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=5e+02 Score=23.93 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=20.6
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 220 KTLSK-ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQV 274 (525)
Q Consensus 220 ~~l~k-eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~ 274 (525)
+-|++ +.++...-|++-++.|+.-++ -|++--...+++++.++..++.
T Consensus 61 ~llvk~~k~~~~~eL~er~E~Le~ri~-------tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 61 NLLVKVSKEEAVDELEERKETLELRIK-------TLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33433 344444444444444442222 3333333334455555555544
No 333
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=23.54 E-value=8.9e+02 Score=25.59 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 246 SRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 246 aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
.|+..+..|+.|...|++....+..-.+=|..+.+.+..++++-
T Consensus 289 ~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~ 332 (339)
T cd09235 289 EREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEILVKFQNKC 332 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777666555544444444433444444444444433
No 334
>PLN02939 transferase, transferring glycosyl groups
Probab=23.37 E-value=5.5e+02 Score=31.58 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
+..+++-.+.+++.+.+++.+....++..|..+++-|....+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (977)
T PLN02939 356 LQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKE 397 (977)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666677777777777777777777777777666655533
No 335
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.31 E-value=6e+02 Score=24.04 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009811 233 LKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKR 288 (525)
Q Consensus 233 lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~ 288 (525)
.+++.+.|+.....+..|++.+.+++...++..+..+.+-....++-+....|-.+
T Consensus 2 y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~e 57 (157)
T PF04136_consen 2 YRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEE 57 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 336
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=23.21 E-value=1.8e+02 Score=32.17 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=64.5
Q ss_pred ccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhh
Q 009811 35 RSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 35 ~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWee 114 (525)
.+-++.++...+++.-++...+.+.+|--+-||+.- -=-.+|.++...+|..+..+-+...-....|.+-.|--
T Consensus 294 ~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~------iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnN 367 (457)
T KOG2085|consen 294 PKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEV------IEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNN 367 (457)
T ss_pred ccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHh------cCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhh
Confidence 345788888888888889999999999999999965 23567889999999999988888888899999999975
Q ss_pred ccc
Q 009811 115 RRV 117 (525)
Q Consensus 115 R~V 117 (525)
..|
T Consensus 368 e~i 370 (457)
T KOG2085|consen 368 EYI 370 (457)
T ss_pred HHH
Confidence 443
No 337
>PF15463 ECM11: Extracellular mutant protein 11
Probab=23.14 E-value=4.1e+02 Score=24.55 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQ 253 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~ 253 (525)
-..++.+|.+.+..++..++.+++++..|...+..
T Consensus 85 f~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~ 119 (139)
T PF15463_consen 85 FSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRA 119 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666654443
No 338
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.11 E-value=1.6e+03 Score=29.01 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHhhhccccch---hh-HHHHHHhcCCC
Q 009811 100 SGKNVVSRLVNIWDERRVFGS---RA-RGVKDVMLGGE 133 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~---~i-~~Lke~llg~~ 133 (525)
+.+.++.+|+. ..||.. .| .-|++.++.++
T Consensus 192 ~dR~kF~kLf~----taiy~~i~~~i~~fl~~yll~e~ 225 (1486)
T PRK04863 192 SDRSKFYRLIE----ASLYGGISSAITRSLRDYLLPEN 225 (1486)
T ss_pred chHHHHHHHHH----HHHHhhHHHhHHHHHHHHcCCCC
Confidence 34555555554 235532 23 55677777654
No 339
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.11 E-value=8.9e+02 Score=25.91 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=7.7
Q ss_pred CCHHHHHHHHhhcc
Q 009811 5 FSEQILAEKLSKLN 18 (525)
Q Consensus 5 Fsed~l~~kL~~Ln 18 (525)
|-.+.|..||.-||
T Consensus 16 f~~edlveklklln 29 (384)
T KOG0972|consen 16 FIKEDLVEKLKLLN 29 (384)
T ss_pred HHHHHHHHHHHHhh
Confidence 33455666666555
No 340
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=23.10 E-value=4.6e+02 Score=25.71 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 235 QCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQV 274 (525)
Q Consensus 235 e~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~ 274 (525)
+..+.++.....|.+++..-++...+.+.+++.++..++.
T Consensus 132 ~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 132 EEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666655555444444444444444433
No 341
>smart00035 CLa CLUSTERIN alpha chain.
Probab=23.10 E-value=5.1e+02 Score=26.26 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 253 QLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 253 ~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.|.+||.=.|.--.+...+++..|.....+..|.++|.+
T Consensus 99 El~eAL~LaE~ftqqYd~lL~~~q~~m~nTs~Lle~ln~ 137 (216)
T smart00035 99 ELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNE 137 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444444555555555555555555555543
No 342
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=23.01 E-value=7.5e+02 Score=24.69 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 009811 198 HRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENM-LKQCIEKLKSVEASRVALVSQLKEALHEQ------ESELENVRT 270 (525)
Q Consensus 198 ~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~-lke~IeqLe~~~~aR~~Lis~LkeAL~~q------E~~lE~vr~ 270 (525)
+...++-+-+|..|-+..+ ...|.+++.+.... ...--+.-++-...|..||..|+..-..+ =+++..++.
T Consensus 2 ~~t~eY~~lld~l~~Nnr~--L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~ 79 (196)
T PF15272_consen 2 DYTSEYLELLDQLDQNNRA--LSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKK 79 (196)
T ss_pred cchHHHHHHHHHHHHhHHH--HHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 009811 271 QMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 271 ~~q~aq~~~~ra~~lr~~L 289 (525)
....+.....++.+++++|
T Consensus 80 ~~~~~~~l~~~i~~le~~l 98 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEKQL 98 (196)
T ss_pred HhHhhHHHHHHHHHHHHHH
No 343
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.90 E-value=6.7e+02 Score=28.18 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=18.6
Q ss_pred HHHHHHHHHH-------------hccchhHHHHHHHHH
Q 009811 322 AIAAEVADKL-------------TASTSSQMIMHSVLS 346 (525)
Q Consensus 322 ~~aa~va~kl-------------aassss~~~l~svls 346 (525)
..|-++|+|| |-++|+-++=+.||-
T Consensus 364 ~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIle 401 (575)
T KOG4403|consen 364 KEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILE 401 (575)
T ss_pred HHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHH
Confidence 3567788885 677888888887764
No 344
>PRK04406 hypothetical protein; Provisional
Probab=22.88 E-value=4.6e+02 Score=22.01 Aligned_cols=14 Identities=36% Similarity=0.358 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 009811 253 QLKEALHEQESELE 266 (525)
Q Consensus 253 ~LkeAL~~qE~~lE 266 (525)
.|+.-+.++|...+
T Consensus 15 ~LE~~lAfQE~tIe 28 (75)
T PRK04406 15 DLECQLAFQEQTIE 28 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 345
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=5.7e+02 Score=25.13 Aligned_cols=88 Identities=14% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 198 HRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK-----SVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 198 ~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe-----~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
..+.+++++++. .++. .-....++++..+++..-++... +....--..++.|++||...+..-+..++..
T Consensus 43 ~~i~~Le~q~~e----~~~~-~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~ 117 (193)
T COG0576 43 QEIAELEAQLEE----LKDK-YLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALL 117 (193)
T ss_pred HHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 345566666654 1111 34455566655555555444333 2233444567788888887655544334444
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 009811 273 QVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 273 q~aq~~~~ra~~lr~~Ld 290 (525)
.=++...+.+.+...++.
T Consensus 118 ~Gvem~~~~l~~~L~k~G 135 (193)
T COG0576 118 EGVEMTLDQLLDALEKLG 135 (193)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 444555566666666553
No 346
>PF01021 TYA: TYA transposon protein; InterPro: IPR015820 Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. This signature defines TYA, found at the N terminus of the gag and gag-pol polyproteins of approximately 440 amino acids and 1755 amino acids in length respectively. Yeast retrotransposon Ty1 produces its proteins as precursors that are subsequently cleaved by an aspartic protease encoded by the element. Cleavage of the gag and gag-Pol polyprotein precursors is a critical step in proliferation of retroviruses and retroelements. These cleavage events are essential for transposition as they release the active reverse transcriptase and integrase and they modify the structure of the virus-like particles in a way that is analogous to the morphological changes that occur during retrovirus core maturation [, , ].; GO: 0003723 RNA binding, 0005737 cytoplasm
Probab=22.61 E-value=61 Score=28.23 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=7.1
Q ss_pred CCccccCCCC
Q 009811 514 PGMAFYGQPP 523 (525)
Q Consensus 514 ~g~~~y~~~~ 523 (525)
-|..|||+|+
T Consensus 83 sgw~~YghPS 92 (98)
T PF01021_consen 83 SGWAHYGHPS 92 (98)
T ss_pred cCcccccCcc
Confidence 3777888775
No 347
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=22.59 E-value=7.5e+02 Score=25.16 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=5.1
Q ss_pred HHHHHHhhccc
Q 009811 282 ACNMRKRLNDE 292 (525)
Q Consensus 282 a~~lr~~Ld~~ 292 (525)
..+|.+.|.++
T Consensus 90 IQqLqk~LK~a 100 (272)
T KOG4552|consen 90 IQQLQKNLKSA 100 (272)
T ss_pred HHHHHHHHHHH
Confidence 33455555443
No 348
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=22.54 E-value=3.6e+02 Score=32.20 Aligned_cols=6 Identities=33% Similarity=0.446 Sum_probs=3.6
Q ss_pred HHHHhc
Q 009811 351 QEAKNA 356 (525)
Q Consensus 351 e~a~~~ 356 (525)
||+.|.
T Consensus 864 ~e~~n~ 869 (1106)
T KOG0162|consen 864 EERTNR 869 (1106)
T ss_pred HHhhcC
Confidence 666654
No 349
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=22.48 E-value=8.1e+02 Score=24.74 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 100 SGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
.+.+-+.++-+.-++|.-.+.+ ...|+.
T Consensus 16 ~ei~lLe~i~~F~reRa~iE~EYA~~L~~ 44 (237)
T cd07657 16 AELRLLETMKKYMAKRAKSDREYASTLGS 44 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666655 244443
No 350
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=22.46 E-value=4.5e+02 Score=25.17 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 195 SVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSV--------EASRVALVSQLKEALHEQESELE 266 (525)
Q Consensus 195 sav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~--------~~aR~~Lis~LkeAL~~qE~~lE 266 (525)
+.+..+..+...+++..-.. ...+-.-|.+....|.+..+.|.+. ...+.+|-+++..+..+-+...+
T Consensus 38 ~~~~~l~~~~~~l~eeik~~----n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k 113 (155)
T PF07464_consen 38 SVAQQLQNVSSSLQEEIKDA----NPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAK 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH------------HHHHHHHHHHHHHHHHhhccc
Q 009811 267 NVRTQ------------MQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 267 ~vr~~------------~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
.+... .+.+..+++.+.++.++|.+.
T Consensus 114 ~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~~a 151 (155)
T PF07464_consen 114 EVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLHEA 151 (155)
T ss_dssp HHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 351
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.33 E-value=1.5e+02 Score=28.80 Aligned_cols=13 Identities=54% Similarity=0.644 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 009811 226 LEEEENMLKQCIE 238 (525)
Q Consensus 226 Lee~e~~lke~Ie 238 (525)
||+.|.++++.||
T Consensus 2 LeD~EsklN~AIE 14 (166)
T PF04880_consen 2 LEDFESKLNQAIE 14 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777788888887
No 352
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=22.32 E-value=29 Score=38.94 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHhhhhhh
Q 009811 190 MARCKSVVHRVKKMEKDVD 208 (525)
Q Consensus 190 l~k~ksav~~~~~~eK~vd 208 (525)
...+...++++++||.+|-
T Consensus 361 ~~~~~~~~~~~e~YEqEI~ 379 (495)
T PF12004_consen 361 LKEYRESMKEVEKYEQEIQ 379 (495)
T ss_dssp -------------------
T ss_pred hhhcccchhhhhhHHHHHH
Confidence 5556666667777777653
No 353
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=22.30 E-value=8.4e+02 Score=24.84 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred hhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 009811 180 LCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLS-KELEEEENMLKQCIEKLKSVEASRVAL-------- 250 (525)
Q Consensus 180 ~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~-keLee~e~~lke~IeqLe~~~~aR~~L-------- 250 (525)
++.....-..|.+|..+..++....-+.|..+..-=-..+..++ .+|.+..+.++..-...-....+|.++
T Consensus 73 l~~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~ 152 (244)
T cd07595 73 LPDDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSG 152 (244)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccc
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 009811 251 -----------VSQLKEALHEQESELENVRTQMQVAQAQ-AEEACNMRK 287 (525)
Q Consensus 251 -----------is~LkeAL~~qE~~lE~vr~~~q~aq~~-~~ra~~lr~ 287 (525)
-+.+++|-..+|+..|.+-..+.+.-+- .+.+.+|..
T Consensus 153 ~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~ 201 (244)
T cd07595 153 GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLID 201 (244)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
No 354
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=22.28 E-value=4.5e+02 Score=22.86 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009811 220 KTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKR 288 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~ 288 (525)
..|++.|......+...++.|+....... .+...++.++.........+++++.+++.
T Consensus 38 ~~~l~~y~~~~~~~~~~l~~L~~l~~~~p-----------~q~~~l~~l~~~~~~~~~~~~~~i~~~~~ 95 (138)
T PF05227_consen 38 PEFLEPYQEARARLEKALAQLRQLVQDNP-----------EQQERLDQLEELIDQWRELLEPQIALRKS 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHH-GG
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666776666666666666653332111 33334444455554545555555555554
No 355
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.20 E-value=1.1e+03 Score=30.49 Aligned_cols=30 Identities=7% Similarity=0.115 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 252 SQLKEALHEQESELENVRTQMQVAQAQAEE 281 (525)
Q Consensus 252 s~LkeAL~~qE~~lE~vr~~~q~aq~~~~r 281 (525)
+.|++.++.++.++++.+..+...+...+.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~ 467 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSV 467 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555555555554444444433
No 356
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=22.15 E-value=7.7e+02 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 100 SGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
.+.+-+.++....++|.-...+ ...|+.
T Consensus 16 ~g~~~~~~l~~f~keRa~iE~eYak~L~k 44 (251)
T cd07653 16 KGIDFLERYGKFVKERAAIEQEYAKKLRK 44 (251)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888877777 355554
No 357
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=22.09 E-value=9.7e+02 Score=25.51 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 213 NAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVA---LVSQLKEALHEQESELENVRTQMQVAQAQA 279 (525)
Q Consensus 213 ~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~---Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~ 279 (525)
..+|. ...|...|..++...+..-..|....++-.. +++.+.+-|..-..+.+++....++.+..+
T Consensus 141 ~lkd~-ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv 209 (305)
T PF14915_consen 141 NLKDN-NEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKV 209 (305)
T ss_pred hHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444 4566667777777766666666544333221 233444444444444444444444443333
No 358
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.07 E-value=1.2e+03 Score=28.08 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHh
Q 009811 21 QQCIETLSHWCIF 33 (525)
Q Consensus 21 QeSIqtlS~W~i~ 33 (525)
+.+|-.+-.||+.
T Consensus 36 KS~ildAi~~~l~ 48 (1164)
T TIGR02169 36 KSNIGDAILFALG 48 (1164)
T ss_pred HHHHHHHHHHHhc
Confidence 4445555556653
No 359
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=21.91 E-value=5.1e+02 Score=22.18 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 009811 231 NMLKQCIEKLK 241 (525)
Q Consensus 231 ~~lke~IeqLe 241 (525)
..|.+.|..|+
T Consensus 17 ~eLE~IV~~LE 27 (81)
T COG1722 17 AELEEIVESLE 27 (81)
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 360
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=21.85 E-value=3.9e+02 Score=25.00 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 233 LKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQV 274 (525)
Q Consensus 233 lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~ 274 (525)
|.+..++|..++..|..-....+....+.+..++.++.++.+
T Consensus 26 Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~ 67 (134)
T PRK10328 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMKA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444444444455555555544433
No 361
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.48 E-value=8e+02 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 100 SGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
.+..-+..|...|++|.-...+ ...|..
T Consensus 16 ~g~~~~~el~~f~keRa~iE~eYak~L~k 44 (236)
T cd07651 16 DSLRTLEELRSFYKERASIEEEYAKRLEK 44 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466688899999999988888 466664
No 362
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=21.46 E-value=1.4e+02 Score=29.24 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=12.4
Q ss_pred CcccCCCCccCccCCCCCC
Q 009811 440 QYLQPSGGIMTPYGYGSIP 458 (525)
Q Consensus 440 q~~q~~~g~~~py~y~~~~ 458 (525)
+.+|.. ||...|+||+-+
T Consensus 135 ~~~~~~-~m~~~~~y~~~~ 152 (182)
T PF06495_consen 135 PAPQFN-PMQGAYPYQMPP 152 (182)
T ss_pred cccccc-ccccccccccCC
Confidence 455666 888888886644
No 363
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.44 E-value=4.8e+02 Score=21.71 Aligned_cols=42 Identities=33% Similarity=0.409 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 226 LEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 226 Lee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
|.-.+-..+..|++|......-..-+..|+..+...+..++.
T Consensus 24 LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 24 LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444443333
No 364
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.44 E-value=5.8e+02 Score=30.77 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 009811 377 TESIPKPEKQTAVSDPNMFLPAQSLSTPPN 406 (525)
Q Consensus 377 ~~kr~k~e~~~~~~~~~~~~~~~~~~~~~~ 406 (525)
+||.|-.|++..+++-...++-..+.++.+
T Consensus 747 vEki~~~e~p~~v~Pv~~l~~~~~psas~n 776 (1118)
T KOG1029|consen 747 VEKIPAVETPGGVPPVQNLPPTMTPSASVN 776 (1118)
T ss_pred HhhcccCCCCCCCCchhcCCCCCCcccccc
Confidence 689999998877765333444444444433
No 365
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.42 E-value=1.9e+02 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSV 243 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~ 243 (525)
....++.|++....++.|-++|+.+
T Consensus 29 Leesl~~ye~G~~L~k~c~~~L~~a 53 (75)
T PRK14064 29 LEDSLDMYQKGIELTKLCQDKLQSA 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 366
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=21.32 E-value=8.6e+02 Score=24.59 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHhhh
Q 009811 169 AEKIVSAYHLVLCE 182 (525)
Q Consensus 169 ~ekivsa~q~l~~~ 182 (525)
.+.+.+.+..+++.
T Consensus 132 l~~ll~~~~~ll~~ 145 (291)
T TIGR00996 132 IDDLLGSLTRLLNG 145 (291)
T ss_pred HHHHHHHHHHHHhc
Confidence 45555555555543
No 367
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=21.27 E-value=9.2e+02 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009811 255 KEALHEQESELENVRTQMQVA 275 (525)
Q Consensus 255 keAL~~qE~~lE~vr~~~q~a 275 (525)
++..++..+.++..+=+...+
T Consensus 129 ~Dl~eee~t~lskd~fk~~~~ 149 (286)
T KOG4451|consen 129 EDLTEEEKTELSKDKFKISVA 149 (286)
T ss_pred hhHhhhhcCchhHHHHHHHHH
Confidence 344444434555444443333
No 368
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=5.5e+02 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 247 RVALVSQLKEALHEQESELENVRTQMQVA 275 (525)
Q Consensus 247 R~~Lis~LkeAL~~qE~~lE~vr~~~q~a 275 (525)
...++++|++-.++++..+|........+
T Consensus 155 ~~~~le~Lqkn~~~~~k~~d~~ne~~~~v 183 (192)
T COG5374 155 AQILLEGLQKNQEELFKLLDKYNELREQV 183 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445566666666666665555444443
No 369
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=21.07 E-value=5.8e+02 Score=28.07 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSV-----EASRVA---LVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~-----~~aR~~---Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
...+++||+..++..+...+-..+. ++.-.. .++.|++..+.-++- +.-+.+.++.+.+++..-|..|.
T Consensus 310 s~gLLkEl~~ve~~vr~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~G---LdpLerqVre~Fh~IV~sR~elL 386 (389)
T PF05633_consen 310 SCGLLKELQQVEASVRELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQG---LDPLERQVREVFHRIVRSRTELL 386 (389)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhHHHH
Confidence 3588888888877666555444332 111111 222233333222222 33334455667777777776664
Q ss_pred c
Q 009811 291 D 291 (525)
Q Consensus 291 ~ 291 (525)
+
T Consensus 387 d 387 (389)
T PF05633_consen 387 D 387 (389)
T ss_pred h
Confidence 4
No 370
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=21.03 E-value=5.9e+02 Score=28.90 Aligned_cols=103 Identities=18% Similarity=0.340 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhccc--chHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-ChhhHHHHHHHHHHHHHH------
Q 009811 22 QCIETLSHWCIFHRS--KAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-GNEFVTEFWKVLPAALKD------ 92 (525)
Q Consensus 22 eSIqtlS~W~i~h~k--~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g~eF~~aF~~vLp~a~~~------ 92 (525)
-.++-+..| -+|.- ..+.||+...+.|.+. .+ -+..++|.|...+-.+ ..+.+..|+..|...+..
T Consensus 243 ~~mq~l~~W-e~~yv~p~~~LVi~~L~~~f~~~-~e---~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 243 PLMQILENW-ENFYVHPNYDLVIEPLKQQFMSD-PE---QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred HHHHHHHHH-HhhccCCchhHHHHHHHHHHhcC-hH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 356777888 43432 4677888887777652 21 2344555555542211 235555555555444332
Q ss_pred -----------------------------HhhcCCcchhhHHHHHHHHhhhccccchhhHHHHHHhc
Q 009811 93 -----------------------------VVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVML 130 (525)
Q Consensus 93 -----------------------------v~~~~d~~~kkkV~Rll~IWeeR~VF~~~i~~Lke~ll 130 (525)
+. +.|+...-+++.-+++|++-.+|+.|-++|-.-+.
T Consensus 318 ~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv-~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~ 383 (549)
T PF07079_consen 318 KQYLALLKILDPRISVSEKLLLSPKVLQDIV-CEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLV 383 (549)
T ss_pred HHHHHHHHhcCCcchhhhhhhcCHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 22 24666778899999999999999998877777664
No 371
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.95 E-value=8.4e+02 Score=24.31 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 009811 193 CKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHE------QESELE 266 (525)
Q Consensus 193 ~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~------qE~~lE 266 (525)
.+.+++.+.+...-+++.-..--+.-...+++.|.+..++.+.+.+.++....+|..++...+..-.- .+.++.
T Consensus 59 L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~ 138 (211)
T cd07598 59 LKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLRQKNPSDRQIIS 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhc
Q 009811 267 NVRTQMQVAQAQAEEAC-NMRKRLN 290 (525)
Q Consensus 267 ~vr~~~q~aq~~~~ra~-~lr~~Ld 290 (525)
.-+..++.|+.-++|.. .|++.++
T Consensus 139 eaE~~l~~a~~d~~r~s~~l~ee~~ 163 (211)
T cd07598 139 QAESELQKASVDANRSTKELEEQMD 163 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 372
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.83 E-value=1.7e+03 Score=28.38 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhc
Q 009811 321 AAIAAEVADKLTA 333 (525)
Q Consensus 321 ~~~aa~va~klaa 333 (525)
...+++|+..++.
T Consensus 1085 ~~l~~~l~~~i~~ 1097 (1353)
T TIGR02680 1085 AGLLARLEQEIAQ 1097 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 373
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.82 E-value=7.4e+02 Score=23.62 Aligned_cols=6 Identities=17% Similarity=0.096 Sum_probs=2.4
Q ss_pred HHHHhh
Q 009811 176 YHLVLC 181 (525)
Q Consensus 176 ~q~l~~ 181 (525)
|+.|++
T Consensus 7 L~~l~d 12 (148)
T COG2882 7 LQKLLD 12 (148)
T ss_pred HHHHHH
Confidence 344444
No 374
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=20.71 E-value=6.9e+02 Score=26.51 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 242 SVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 242 ~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.....|...+..|+.|...|++-...+..-.+=|..+.+.+.++++...+
T Consensus 302 ~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~ 351 (356)
T cd09237 302 SKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQA 351 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777665555544444444444444445555544443
No 375
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.70 E-value=4.2e+02 Score=22.92 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcc
Q 009811 235 QCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQ---VAQAQAEEACNMRKRLND 291 (525)
Q Consensus 235 e~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q---~aq~~~~ra~~lr~~Ld~ 291 (525)
..++.+-.....|..|+..+.++..+....-+.++.... ++....+++..+++++.+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~ 85 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKE 85 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH
No 376
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=20.56 E-value=6.5e+02 Score=22.88 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 218 KRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKE 256 (525)
Q Consensus 218 r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~Lke 256 (525)
++..|...+++....|..+++.++.....+. +..-|.+
T Consensus 87 ~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~ 124 (213)
T cd00176 87 RWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEE 124 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3667777777777777777777766655554 4444433
No 377
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.48 E-value=1.4e+03 Score=27.60 Aligned_cols=7 Identities=43% Similarity=0.496 Sum_probs=3.0
Q ss_pred CCCCccC
Q 009811 444 PSGGIMT 450 (525)
Q Consensus 444 ~~~g~~~ 450 (525)
-+||.-.
T Consensus 1075 lSgge~~ 1081 (1164)
T TIGR02169 1075 MSGGEKS 1081 (1164)
T ss_pred cCcchHH
Confidence 3445433
No 378
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.41 E-value=4.6e+02 Score=24.34 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=7.1
Q ss_pred HHHHhhhhhhhhhc
Q 009811 199 RVKKMEKDVDIACT 212 (525)
Q Consensus 199 ~~~~~eK~vd~acs 212 (525)
-+-...|++|..+.
T Consensus 77 dIi~kakqIe~LId 90 (144)
T PF11221_consen 77 DIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455556665444
No 379
>PF05802 EspB: Enterobacterial EspB protein
Probab=20.41 E-value=1e+03 Score=25.19 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009811 248 VALVSQLKEALHEQESELEN 267 (525)
Q Consensus 248 ~~Lis~LkeAL~~qE~~lE~ 267 (525)
.+|...|++.|++|..+...
T Consensus 54 ~eL~kKLRdiLq~YNQKQQ~ 73 (317)
T PF05802_consen 54 AELFKKLRDILQDYNQKQQE 73 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555778888888654433
No 380
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.38 E-value=5.9e+02 Score=24.62 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
+.+++........-|..|+.....-..-|..|++.+.+.+...+.++.-+..-+...+.+..-.++|..++
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 381
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=20.37 E-value=2e+02 Score=23.54 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 218 KRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENV 268 (525)
Q Consensus 218 r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~v 268 (525)
+...++++|++.+--|.+.++.++ -...|+...++.|+..|.+...+
T Consensus 9 ~Le~Iv~~LE~~~l~Leesl~lye----eG~~L~k~c~~~L~~ae~kv~~l 55 (67)
T TIGR01280 9 ELEQIVQKLESGDLALEEALNLFE----RGMALARRCEKKLAQAEQRVRKL 55 (67)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
No 382
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.34 E-value=8.6e+02 Score=24.23 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.4
Q ss_pred HHHHHH
Q 009811 340 IMHSVL 345 (525)
Q Consensus 340 ~l~svl 345 (525)
||+.+|
T Consensus 210 lls~yL 215 (302)
T PF10186_consen 210 LLSRYL 215 (302)
T ss_pred HHHHHh
Confidence 344443
No 383
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.31 E-value=6.8e+02 Score=25.22 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 009811 335 TSSQMIMHSVLSTFAAQEAK 354 (525)
Q Consensus 335 sss~~~l~svlss~aae~a~ 354 (525)
.-...++.+||.----|++=
T Consensus 124 ~~~~~L~~~Il~RYHEEQiW 143 (207)
T PF05546_consen 124 EAFDDLMRAILTRYHEEQIW 143 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776666554
No 384
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.29 E-value=8e+02 Score=23.85 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIE 238 (525)
Q Consensus 224 keLee~e~~lke~Ie 238 (525)
+++..--..+|.+++
T Consensus 102 key~~y~~svk~~l~ 116 (200)
T cd07624 102 REYLLYSDAVKDVLK 116 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 385
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=20.18 E-value=1.6e+03 Score=28.07 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=9.5
Q ss_pred HHHHHHhhccCCH
Q 009811 9 ILAEKLSKLNCTQ 21 (525)
Q Consensus 9 ~l~~kL~~Ln~SQ 21 (525)
.|.+||..|+..+
T Consensus 37 aF~KklK~~t~~~ 49 (1128)
T KOG2051|consen 37 AFMKKLKLLTAEQ 49 (1128)
T ss_pred HHHHHHHHHhhhh
Confidence 5788888777543
No 386
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.11 E-value=7e+02 Score=24.61 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLK 234 (525)
Q Consensus 219 ~~~l~keLee~e~~lk 234 (525)
.+....++-+.++.+.
T Consensus 146 ~~~~~~~l~~l~~~l~ 161 (292)
T PF01544_consen 146 SNELLRELFDLRRELS 161 (292)
T ss_dssp THHHCCHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHH
Confidence 3445555544333333
No 387
>PRK03918 chromosome segregation protein; Provisional
Probab=20.04 E-value=1.5e+03 Score=26.77 Aligned_cols=14 Identities=7% Similarity=0.015 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhc
Q 009811 21 QQCIETLSHWCIFH 34 (525)
Q Consensus 21 QeSIqtlS~W~i~h 34 (525)
..+|-.+-.|+++.
T Consensus 36 KStil~ai~~~l~~ 49 (880)
T PRK03918 36 KSSILEAILVGLYW 49 (880)
T ss_pred HHHHHHHHHHHhcC
Confidence 56777777888874
No 388
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.03 E-value=4.8e+02 Score=21.16 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKS 242 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~ 242 (525)
....+.+++..-.-..++|++++-
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~ 46 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMEL 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555553
No 389
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.01 E-value=7.9e+02 Score=23.99 Aligned_cols=79 Identities=15% Similarity=0.380 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 191 ARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQC------IEKLKSVEASRVALVSQLKEALHEQESE 264 (525)
Q Consensus 191 ~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~------IeqLe~~~~aR~~Lis~LkeAL~~qE~~ 264 (525)
.++......++++++.++ .+.+++++...-+.+. ++.|+........|-..|...-...-+.
T Consensus 69 ~~~~~l~~~~~~~~~~i~------------~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIE------------ELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009811 265 LENVRTQMQVAQAQAEE 281 (525)
Q Consensus 265 lE~vr~~~q~aq~~~~r 281 (525)
++..+.....+..-+||
T Consensus 137 i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Done!