Query 009811
Match_columns 525
No_of_seqs 238 out of 469
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 100.0 1.3E-35 4.5E-40 271.7 12.7 129 4-132 2-134 (142)
2 4fu3_A Regulation of nuclear P 100.0 1.3E-35 4.4E-40 267.7 11.0 133 2-134 1-134 (135)
3 4flb_A Regulation of nuclear P 100.0 7.5E-32 2.5E-36 242.7 9.8 125 3-130 3-129 (132)
4 3d9j_A RNA-binding protein 16; 99.9 2.6E-26 8.9E-31 211.0 13.0 125 7-132 4-138 (145)
5 1sz9_A PCF11 protein; RNA poly 99.9 5.8E-25 2E-29 202.0 11.8 121 8-131 10-137 (144)
6 3clj_A Protein NRD1; CTD-inter 99.6 8.9E-15 3E-19 136.0 10.9 124 7-130 3-146 (157)
7 4fla_A Regulation of nuclear P 98.7 2.9E-07 9.9E-12 85.2 14.5 118 168-292 23-143 (152)
8 4fla_A Regulation of nuclear P 93.6 0.63 2.1E-05 42.8 11.3 76 199-279 69-144 (152)
9 1x5b_A Signal transducing adap 88.4 1.3 4.6E-05 40.7 8.0 103 5-114 11-125 (163)
10 3ldz_A STAM-1, signal transduc 86.0 2.7 9.3E-05 37.6 8.4 84 23-114 25-114 (140)
11 1dvp_A HRS, hepatocyte growth 84.8 2 6.9E-05 41.0 7.4 99 10-115 6-116 (220)
12 3mq9_A Bone marrow stromal ant 84.5 11 0.00038 39.2 13.6 112 171-283 356-470 (471)
13 2xs1_A Programmed cell death 6 79.4 16 0.00055 40.7 13.2 50 231-280 653-702 (704)
14 3iot_A Maltose-binding protein 78.3 0.46 1.6E-05 49.1 0.2 11 439-450 431-441 (449)
15 1m1j_B Fibrinogen beta chain; 76.5 23 0.0008 37.9 12.7 19 190-208 91-110 (464)
16 1juq_A ADP-ribosylation factor 76.4 4.6 0.00016 37.4 6.5 116 10-131 14-145 (171)
17 3g2s_A C-terminal fragment of 74.5 17 0.00057 32.9 9.5 102 23-130 31-142 (149)
18 3zyq_A Hepatocyte growth facto 74.1 14 0.00046 35.5 9.4 100 9-115 8-119 (226)
19 1mhq_A ADP-ribosylation factor 72.7 16 0.00056 32.8 9.0 103 22-130 20-132 (148)
20 4aj5_A SKA1, spindle and kinet 71.1 15 0.00052 30.9 7.6 72 199-272 16-88 (91)
21 2efl_A Formin-binding protein 70.1 79 0.0027 30.3 17.4 48 76-128 6-54 (305)
22 3cve_A Homer protein homolog 1 70.0 41 0.0014 27.2 9.7 57 224-290 10-66 (72)
23 2fxo_A Myosin heavy chain, car 69.8 57 0.0019 28.5 12.5 75 219-293 50-124 (129)
24 3cvf_A Homer-3, homer protein 69.7 39 0.0013 27.7 9.7 58 223-290 15-72 (79)
25 1elk_A Target of MYB1; superhe 67.5 14 0.00048 33.5 7.4 100 10-115 17-131 (157)
26 3ghg_B Fibrinogen beta chain; 66.1 22 0.00076 38.0 9.5 20 189-208 85-105 (461)
27 2dfs_A Myosin-5A; myosin-V, in 65.8 48 0.0016 39.0 13.2 10 109-118 874-883 (1080)
28 3uul_A Utrophin; spectrin repe 65.3 55 0.0019 26.7 10.6 70 219-291 38-110 (118)
29 3haj_A Human pacsin2 F-BAR; pa 64.7 41 0.0014 35.5 11.5 49 76-127 12-61 (486)
30 3uun_A Dystrophin; triple heli 63.6 59 0.002 26.4 11.4 89 200-291 18-110 (119)
31 3ghg_A Fibrinogen alpha chain; 63.5 25 0.00085 38.2 9.3 86 184-269 60-151 (562)
32 2spc_A Spectrin; cytoskeleton; 62.7 61 0.0021 26.4 11.4 70 219-291 38-107 (107)
33 2z73_A Rhodopsin; visual pigme 61.1 2 7E-05 43.5 0.5 7 105-111 131-137 (448)
34 3oja_B Anopheles plasmodium-re 59.9 83 0.0029 33.3 12.9 59 224-282 512-570 (597)
35 1deq_A Fibrinogen (alpha chain 59.1 57 0.002 34.0 10.8 45 218-269 110-154 (390)
36 3t98_B Nucleoporin NUP58/NUP45 57.2 86 0.0029 26.3 10.4 28 219-246 10-37 (93)
37 3vkg_A Dynein heavy chain, cyt 56.9 3.1E+02 0.01 36.3 19.0 31 261-291 1971-2001(3245)
38 2x3v_A Syndapin I, protein kin 55.0 1.5E+02 0.005 29.2 13.0 28 100-127 31-59 (337)
39 3ghg_A Fibrinogen alpha chain; 54.7 95 0.0033 33.7 11.9 8 284-291 180-187 (562)
40 2dfs_A Myosin-5A; myosin-V, in 53.4 2.2E+02 0.0074 33.5 15.8 11 103-113 888-898 (1080)
41 2efk_A CDC42-interacting prote 53.0 1.6E+02 0.0055 28.1 16.9 28 100-127 18-46 (301)
42 4e2i_2 DNA polymerase alpha su 52.8 21 0.00072 29.3 5.1 47 5-51 3-51 (78)
43 2zqm_A Prefoldin beta subunit 52.2 81 0.0028 26.3 9.2 47 219-272 60-107 (117)
44 1i6z_A BAG-family molecular ch 52.0 1.3E+02 0.0046 26.9 10.8 30 263-292 93-122 (135)
45 2w83_C C-JUN-amino-terminal ki 51.9 96 0.0033 25.3 9.9 58 229-289 17-74 (77)
46 3vkg_A Dynein heavy chain, cyt 50.7 1.4E+02 0.0049 39.3 14.6 72 221-292 2011-2085(3245)
47 3bas_A Myosin heavy chain, str 50.5 1E+02 0.0036 25.2 10.2 32 230-261 20-51 (89)
48 3ol1_A Vimentin; structural ge 49.8 1.1E+02 0.0039 26.4 9.8 50 199-253 21-70 (119)
49 1x79_B RAB GTPase binding effe 48.5 1.4E+02 0.0047 26.0 11.2 44 234-277 16-59 (112)
50 2bnx_A Diaphanous protein homo 47.6 7.7 0.00026 40.2 2.2 196 52-270 167-379 (386)
51 1fxk_A Prefoldin; archaeal pro 46.9 1.1E+02 0.0036 25.2 8.9 17 225-241 62-78 (107)
52 3aco_A Pacsin2, protein kinase 46.6 79 0.0027 31.5 9.5 176 77-284 20-213 (350)
53 2jak_A Serine/threonine-protei 45.1 26 0.00088 36.7 5.7 84 29-118 285-368 (392)
54 3hiu_A Uncharacterized protein 45.1 93 0.0032 28.6 8.9 59 236-294 7-68 (166)
55 1m1j_A Fibrinogen alpha subuni 44.6 1.4E+02 0.0049 31.9 11.2 18 189-206 66-83 (491)
56 1m1j_C Fibrinogen gamma chain; 44.3 1.9E+02 0.0064 30.4 12.1 38 232-269 88-125 (409)
57 2yfa_A MCPS, methyl-accepting 43.6 2E+02 0.0069 26.6 12.2 50 221-270 79-128 (258)
58 2xus_A Breast cancer metastasi 43.2 49 0.0017 24.8 5.4 26 229-254 4-29 (49)
59 1zxa_A CGMP-dependent protein 43.0 33 0.0011 27.4 4.7 40 237-276 13-52 (67)
60 1m1j_C Fibrinogen gamma chain; 42.0 3.3E+02 0.011 28.5 14.2 10 199-208 56-65 (409)
61 3b5n_A Synaptobrevin homolog 1 40.9 1.2E+02 0.004 23.1 9.3 57 219-289 4-60 (61)
62 3nmd_A CGMP dependent protein 40.6 88 0.003 25.2 6.9 27 246-272 37-63 (72)
63 3ghg_C Fibrinogen gamma chain; 40.5 1.6E+02 0.0054 31.0 10.8 89 198-291 27-133 (411)
64 3tnu_B Keratin, type II cytosk 39.6 1.9E+02 0.0064 25.1 11.7 8 201-208 46-53 (129)
65 3s84_A Apolipoprotein A-IV; fo 39.2 2.8E+02 0.0097 27.2 12.0 72 220-291 62-143 (273)
66 3tnu_A Keratin, type I cytoske 39.1 1.9E+02 0.0066 25.1 11.7 8 201-208 48-55 (131)
67 1x8y_A Lamin A/C; structural p 38.8 1.2E+02 0.004 24.8 7.7 12 222-233 15-26 (86)
68 3u0c_A Invasin IPAB, 62 kDa an 38.5 2.5E+02 0.0085 26.2 11.4 75 219-293 70-144 (201)
69 2kw6_A Cyclin-dependent kinase 38.4 30 0.001 27.3 3.7 49 192-241 12-60 (65)
70 3na7_A HP0958; flagellar bioge 38.3 2.7E+02 0.0094 26.6 15.8 43 199-245 75-118 (256)
71 3o0z_A RHO-associated protein 38.2 2.5E+02 0.0084 26.1 11.8 47 192-250 21-67 (168)
72 3gm3_A Protein tyrosine kinase 37.7 1.8E+02 0.0062 26.6 9.3 78 199-290 60-139 (153)
73 3he5_A Synzip1; heterodimeric 37.7 1.1E+02 0.0039 22.0 6.9 35 222-256 4-38 (49)
74 1wt6_A Myotonin-protein kinase 35.7 1.8E+02 0.0063 23.9 9.4 44 221-264 14-57 (81)
75 4ioe_A Secreted protein ESXB; 35.5 1.6E+02 0.0054 23.0 8.8 43 199-241 31-73 (93)
76 3a7p_A Autophagy protein 16; c 35.3 2.6E+02 0.0089 25.5 10.8 42 222-263 69-110 (152)
77 3ogh_B Protein YCIE; iron-bind 35.0 2E+02 0.0069 26.5 9.5 60 234-293 8-70 (171)
78 1nlw_A MAD protein, MAX dimeri 34.6 53 0.0018 26.6 4.9 7 235-241 47-53 (80)
79 1g73_A SMAC/diablo, second mit 33.9 2.3E+02 0.008 26.0 9.4 70 219-289 78-149 (162)
80 1n7s_A Vesicle-associated memb 33.1 1.6E+02 0.0054 22.4 9.3 57 219-289 6-62 (63)
81 3he4_B Synzip5; heterodimeric 32.8 1.1E+02 0.0037 21.9 5.5 30 233-266 8-37 (46)
82 2keb_A DNA polymerase subunit 32.5 84 0.0029 26.9 5.9 46 4-49 25-72 (101)
83 2pv4_A Uncharacterized protein 30.2 48 0.0016 29.8 4.1 54 56-109 71-143 (145)
84 1deq_A Fibrinogen (alpha chain 29.9 3.6E+02 0.012 28.1 11.2 57 185-242 64-120 (390)
85 3efg_A Protein SLYX homolog; x 29.4 1.2E+02 0.004 24.5 6.1 24 248-271 27-50 (78)
86 3efg_A Protein SLYX homolog; x 29.3 1.6E+02 0.0054 23.8 6.8 43 223-265 16-58 (78)
87 2m1l_A Cyclin-dependent kinase 29.2 65 0.0022 25.7 4.3 49 192-241 16-64 (69)
88 2qyw_A Vesicle transport throu 28.9 2.3E+02 0.008 23.6 8.2 20 221-240 49-68 (102)
89 2nps_A VAMP-4, vesicle-associa 28.6 2.1E+02 0.0073 22.4 8.4 57 219-289 10-66 (74)
90 3rru_A TOM1L1 protein; structu 28.4 78 0.0027 28.6 5.4 90 22-114 35-130 (152)
91 3rkg_A Magnesium transporter M 28.2 3E+02 0.01 27.0 10.1 71 221-291 120-192 (261)
92 2l2l_A Transcriptional repress 28.2 1.1E+02 0.0039 22.0 5.0 29 245-273 4-32 (43)
93 3i00_A HIP-I, huntingtin-inter 28.1 3E+02 0.01 24.0 10.9 65 222-289 16-80 (120)
94 3opc_A Uncharacterized protein 27.7 2.6E+02 0.0089 24.4 8.8 29 224-252 41-69 (154)
95 2xs1_A Programmed cell death 6 27.7 4.5E+02 0.016 29.0 12.5 47 244-290 652-698 (704)
96 1gp8_A Protein (scaffolding pr 27.6 35 0.0012 24.5 2.2 29 197-226 7-36 (40)
97 3nmd_A CGMP dependent protein 27.3 1.4E+02 0.0046 24.1 5.9 31 231-261 36-66 (72)
98 1gs9_A Apolipoprotein E, APOE4 27.2 2.2E+02 0.0074 26.0 8.2 23 219-241 90-112 (165)
99 3tul_A Cell invasion protein S 27.2 3E+02 0.01 25.1 8.9 42 251-292 54-95 (158)
100 3ol1_A Vimentin; structural ge 26.9 3E+02 0.01 23.6 12.5 13 169-181 18-30 (119)
101 3oja_B Anopheles plasmodium-re 26.8 5.7E+02 0.019 26.8 15.0 49 224-272 505-553 (597)
102 2z0v_A SH3-containing GRB2-lik 26.2 3E+02 0.01 26.0 9.5 15 224-238 165-179 (240)
103 3oja_A Leucine-rich immune mol 26.1 4.7E+02 0.016 26.8 11.8 62 221-282 414-475 (487)
104 2fzt_A Hypothetical protein TM 26.1 2.6E+02 0.0089 22.7 7.3 11 201-211 5-15 (79)
105 4dyl_A Tyrosine-protein kinase 26.0 5.4E+02 0.018 26.2 13.9 29 99-127 22-51 (406)
106 2fup_A Hypothetical protein PA 25.8 1.9E+02 0.0064 25.1 7.4 30 225-254 40-69 (157)
107 3q8t_A Beclin-1; autophagy, AT 25.5 2.9E+02 0.01 22.9 11.5 25 258-282 69-93 (96)
108 2oqq_A Transcription factor HY 25.5 1.9E+02 0.0066 20.9 6.4 23 220-242 2-24 (42)
109 1few_A Second mitochondria-der 25.4 4.2E+02 0.015 24.8 12.1 29 262-290 122-150 (184)
110 2qyw_A Vesicle transport throu 25.4 1.7E+02 0.0057 24.6 6.6 47 221-267 19-67 (102)
111 3fga_B Serine/threonine-protei 25.2 49 0.0017 34.8 3.9 86 28-119 239-324 (403)
112 1zww_A SH3-containing GRB2-lik 25.2 4.4E+02 0.015 25.0 11.6 14 225-238 182-195 (256)
113 1zxa_A CGMP-dependent protein 25.2 1.2E+02 0.0042 24.0 5.3 46 221-266 11-56 (67)
114 2j69_A Bacterial dynamin-like 25.1 2.4E+02 0.0081 31.2 9.6 52 200-258 594-646 (695)
115 3mq7_A Bone marrow stromal ant 25.0 3.5E+02 0.012 23.7 10.7 27 258-284 73-99 (121)
116 3jsv_C NF-kappa-B essential mo 24.9 3.1E+02 0.011 23.1 9.8 18 246-263 20-37 (94)
117 3nr7_A DNA-binding protein H-N 24.8 2.6E+02 0.0087 23.1 7.4 40 233-272 29-68 (86)
118 3k29_A Putative uncharacterize 24.6 4.2E+02 0.014 24.5 13.7 28 168-198 20-47 (169)
119 4aj5_K Spindle and kinetochore 24.6 3.3E+02 0.011 24.0 8.5 72 188-273 12-85 (123)
120 3oja_A Leucine-rich immune mol 24.5 3.1E+02 0.011 28.2 10.0 23 262-284 427-449 (487)
121 4abx_A DNA repair protein RECN 24.4 1.8E+02 0.0062 26.3 7.2 24 184-207 31-54 (175)
122 3s84_A Apolipoprotein A-IV; fo 24.4 5.1E+02 0.017 25.3 13.7 19 223-241 87-105 (273)
123 2ocy_A RAB guanine nucleotide 24.3 4.1E+02 0.014 24.2 12.5 62 219-280 60-132 (154)
124 1sfc_A VAMP 2, protein (synapt 24.2 3.1E+02 0.01 22.8 10.0 57 219-289 32-88 (96)
125 2npp_B PP2A, B subunit, serine 24.2 57 0.002 34.7 4.2 84 29-118 273-356 (449)
126 4aj5_K Spindle and kinetochore 24.2 3.7E+02 0.013 23.7 12.0 14 276-289 81-94 (123)
127 3d5a_X RF1, peptide chain rele 23.6 3.5E+02 0.012 27.9 9.8 86 197-289 9-96 (354)
128 3fb2_A Spectrin alpha chain, b 23.5 4.1E+02 0.014 24.0 12.8 34 219-252 48-81 (218)
129 4ehp_B Catenin alpha-1; adhere 22.8 72 0.0025 27.8 3.8 40 250-289 69-111 (111)
130 4akv_A Sorting nexin-33; trans 21.8 6.4E+02 0.022 25.6 12.5 17 274-290 368-384 (386)
131 2bnl_A Modulator protein RSBR; 21.5 44 0.0015 30.1 2.3 38 26-70 6-43 (136)
132 1gl2_C VTI1B, vesicle transpor 21.2 2.8E+02 0.0096 21.2 8.3 58 228-289 6-63 (65)
133 2of3_A ZYG-9; multifunctional 21.1 1.7E+02 0.0058 28.8 6.7 67 58-129 105-176 (266)
134 2xz3_A Maltose ABC transporter 20.7 4.3E+02 0.015 27.0 10.1 23 248-270 378-400 (463)
135 3swy_A Cyclic nucleotide-gated 20.6 1.5E+02 0.0051 21.8 4.6 40 198-242 5-44 (46)
136 2gyq_A YCFI, putative structur 20.4 4.4E+02 0.015 24.1 9.0 26 267-292 50-75 (173)
137 1gqe_A Release factor 2, RF2; 20.2 5.7E+02 0.02 26.3 10.6 40 197-241 31-71 (365)
138 3swf_A CGMP-gated cation chann 20.2 2.2E+02 0.0077 23.0 5.9 41 198-243 7-47 (74)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=100.00 E-value=1.3e-35 Score=271.71 Aligned_cols=129 Identities=26% Similarity=0.399 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcC--CcCcccchhhhhHHHHHHhhhc-ChhhHH
Q 009811 4 VFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSS--QLVQKVPLLYLANDILQNSKRK-GNEFVT 80 (525)
Q Consensus 4 ~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks--~~~kKL~lLYLaNDVlQnSkrK-g~eF~~ 80 (525)
+|+++.|+++|++||+||+||++++.|||+|+++++.||++|.++|.++ +.++||++|||+|||||||++| +.+|++
T Consensus 2 ~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~ 81 (142)
T 2km4_A 2 AFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQD 81 (142)
T ss_dssp CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHH
T ss_pred CCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHH
Confidence 7999999999999999999999999999999999999999999999986 6799999999999999999986 589999
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcCC
Q 009811 81 EFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLGG 132 (525)
Q Consensus 81 aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg~ 132 (525)
+|+++|+++|.+++...|++.+++|.|||+||++|+||+.+ +..|++.+.|.
T Consensus 82 ~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~~ 134 (142)
T 2km4_A 82 SFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAA 134 (142)
T ss_dssp HHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHhH
Confidence 99999999999999888999999999999999999999999 79999988763
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=100.00 E-value=1.3e-35 Score=267.72 Aligned_cols=133 Identities=42% Similarity=0.688 Sum_probs=123.3
Q ss_pred CCCCCHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHH
Q 009811 2 NSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTE 81 (525)
Q Consensus 2 ~~~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~a 81 (525)
+|+|+++.|+++|++||+||+||++++.||++|+++|+.||++|.++|++++.++||++|||+|||||||++++++|+.+
T Consensus 1 ~ssf~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~ 80 (135)
T 4fu3_A 1 GSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTRE 80 (135)
T ss_dssp --CCCHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred CCCCCHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcCCCC
Q 009811 82 FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLGGEV 134 (525)
Q Consensus 82 F~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg~~~ 134 (525)
|+++|+.+|.+++...+++.+++|.|||+||++|+||+++ +..|++.+.+..+
T Consensus 81 f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~~~~ 134 (135)
T 4fu3_A 81 FESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKS 134 (135)
T ss_dssp HHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCCC
Confidence 9999999999999888889999999999999999999999 7999998876544
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.5e-32 Score=242.69 Aligned_cols=125 Identities=32% Similarity=0.528 Sum_probs=118.2
Q ss_pred CCCCHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcC-hhhHHH
Q 009811 3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKG-NEFVTE 81 (525)
Q Consensus 3 ~~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg-~eF~~a 81 (525)
++|.++.|+++|++||+||+||++++.|||+|+++|+.||++|.++|++++.++||++|||+|||+|||++++ ..|+.+
T Consensus 3 ~~~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~ 82 (132)
T 4flb_A 3 AGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRES 82 (132)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHH
T ss_pred chHHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999886 799999
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhc
Q 009811 82 FWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVML 130 (525)
Q Consensus 82 F~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~ll 130 (525)
|+++|+++|.++ .|++.+++|.|||+||++|+||+++ +..|++.|.
T Consensus 83 f~~~l~~~~~~~---~~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~ 129 (132)
T 4flb_A 83 FADVLPEAAALV---KDPSVSKSVERIFKIWEDRNVYPEEMIVALREALS 129 (132)
T ss_dssp HHTTHHHHHHTT---CSTTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHh
Confidence 999999999987 4788999999999999999999999 799998764
No 4
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.93 E-value=2.6e-26 Score=211.03 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=116.2
Q ss_pred HHHHHHHHhhc-----cCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcCh----h
Q 009811 7 EQILAEKLSKL-----NCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGN----E 77 (525)
Q Consensus 7 ed~l~~kL~~L-----n~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~----e 77 (525)
.+.|+++|+.| ++|+.+|++++.||++|+++++.||++|.+++++++.++||.+|||+|||+||+++++. +
T Consensus 4 v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~ 83 (145)
T 3d9j_A 4 VKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDV 83 (145)
T ss_dssp HHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCS
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCcccc
Confidence 47899999999 56889999999999999999999999999999999999999999999999999998753 8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcCC
Q 009811 78 FVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLGG 132 (525)
Q Consensus 78 F~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg~ 132 (525)
|...|+++|+.+|.++|. .+++.|++|.|||+||++|+||+.+ ++.|++.+.+.
T Consensus 84 f~~~F~~~L~~~f~~~~~-~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~~~ 138 (145)
T 3d9j_A 84 FAPRFSNNIISTFQNLYR-CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAAL 138 (145)
T ss_dssp HHHHHHHHHHHHHHHHTS-SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCc
Confidence 999999999999999985 4689999999999999999999999 79999888643
No 5
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.92 E-value=5.8e-25 Score=201.97 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=114.6
Q ss_pred HHHHHHHhhcc-CCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHH
Q 009811 8 QILAEKLSKLN-CTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVL 86 (525)
Q Consensus 8 d~l~~kL~~Ln-~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vL 86 (525)
+.|.++|..|+ +|+.+|++++.||++|+++|+.||++|.++|++++.++||.+|||+|||++|++ .+|...|+++|
T Consensus 10 ~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g---~~y~~~F~~~l 86 (144)
T 1sz9_A 10 KDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG---SPYTIYFSRNL 86 (144)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC---TTHHHHHHTTH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc---chHHHHHHHHH
Confidence 67899999999 999999999999999999999999999999999999999999999999999964 68999999999
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHhhhc-----cccchh-hHHHHHHhcC
Q 009811 87 PAALKDVVENGDDSGKNVVSRLVNIWDER-----RVFGSR-ARGVKDVMLG 131 (525)
Q Consensus 87 p~a~~~v~~~~d~~~kkkV~Rll~IWeeR-----~VF~~~-i~~Lke~llg 131 (525)
+++|.++|...|+.+|.+|.||++||++| .||+.+ ++.|++.|..
T Consensus 87 ~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 87 FNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 99999999989999999999999999999 999999 6888887653
No 6
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.9e-15 Score=136.00 Aligned_cols=124 Identities=15% Similarity=0.247 Sum_probs=109.6
Q ss_pred HHHHHHHHhhcc-----CCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhh---c-C--
Q 009811 7 EQILAEKLSKLN-----CTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKR---K-G-- 75 (525)
Q Consensus 7 ed~l~~kL~~Ln-----~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkr---K-g-- 75 (525)
.+.|+.-|+.|. .|..-|.+++.||+.|.++++.||+++.+++++++.++||..||+++.|+.+++. + |
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~ 82 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNS 82 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCc
Confidence 788999999884 6889999999999999999999999999999999999999999999999999884 2 1
Q ss_pred -----hhh---HHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhc
Q 009811 76 -----NEF---VTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVML 130 (525)
Q Consensus 76 -----~eF---~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~ll 130 (525)
..| +..|..+++..|.+++.+.+++.|.||.|||+||+.+++|+.+ ++.|++.+.
T Consensus 83 ~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~ 146 (157)
T 3clj_A 83 SSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCF 146 (157)
T ss_dssp ---STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHhh
Confidence 125 5668899999999988888999999999999999999999998 577766543
No 7
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=98.69 E-value=2.9e-07 Score=85.20 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=99.3
Q ss_pred chhhhHHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhhh--hhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 168 AAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDI--ACTNAKDPK-RKTLSKELEEEENMLKQCIEKLKSVE 244 (525)
Q Consensus 168 ~~ekivsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~--acs~~~d~r-~~~l~keLee~e~~lke~IeqLe~~~ 244 (525)
.+++++.+++.+.+..+.+.+...+ |..|=.+|.+ .|...+|+. +..|.++++++...|.+|+.+|+...
T Consensus 23 ~~~elik~L~~le~sassDa~vrq~-------Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~ 95 (152)
T 4fla_A 23 LTEELIKALQDLENAASGDATVRQK-------IASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAEL 95 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-------HHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccccchHHHHHH-------HHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999888876666554433 3333334443 233446775 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 245 ASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 245 ~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
+.|..|+..|+++..+|++.+.+++..+.+++.+.+|+.++|++|++.
T Consensus 96 ~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~h 143 (152)
T 4fla_A 96 EDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSH 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875
No 8
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=93.57 E-value=0.63 Score=42.79 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=54.1
Q ss_pred HHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQ 278 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~ 278 (525)
..+++.++|+.+|....++ .+.|..|+ .-++..++-|+.........+...+.-|++|+.+++++..+....+..
T Consensus 69 ~~e~l~~~veeA~~~L~eY-n~rL~~E~----~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~h 143 (152)
T 4fla_A 69 AAERLSKTVDEACLLLAEY-NGRLAAEL----EDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSH 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999765343 44455555 555555666666666777888888888999999988888887665554
Q ss_pred H
Q 009811 279 A 279 (525)
Q Consensus 279 ~ 279 (525)
+
T Consensus 144 i 144 (152)
T 4fla_A 144 I 144 (152)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=88.41 E-value=1.3 Score=40.70 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCHHHHHHHHhhccCC------HHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-C--
Q 009811 5 FSEQILAEKLSKLNCT------QQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-G-- 75 (525)
Q Consensus 5 Fsed~l~~kL~~Ln~S------QeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g-- 75 (525)
|....|...+.+.++. =..|-.+..-|-.....+++.+..+.++|...+....|.-|-|++-+++||-.. .
T Consensus 11 ~~~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 11 FTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCCCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455666655542 234445555555555678899999999998777777788899999999998532 1
Q ss_pred ---hhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhh
Q 009811 76 ---NEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 76 ---~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWee 114 (525)
.+|.+++.+++. ...+..+++++..+|.-|.+
T Consensus 91 vas~~Fl~el~~l~~-------~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 91 VCSRDFATEVRAVIK-------NKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HTSHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHH
Confidence 356666544332 23577899999999999997
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.00 E-value=2.7 Score=37.57 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-----C-hhhHHHHHHHHHHHHHHHhhc
Q 009811 23 CIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-----G-NEFVTEFWKVLPAALKDVVEN 96 (525)
Q Consensus 23 SIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-----g-~eF~~aF~~vLp~a~~~v~~~ 96 (525)
.|-.+..-|-.....+++.+..+.++|........+.-|-|+.-+++||-.+ + .+|.+++.+++. .
T Consensus 25 ~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~--------~ 96 (140)
T 3ldz_A 25 LILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN--------K 96 (140)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc--------c
Confidence 4444444444444568899999999998766666677788999999998432 1 367777655442 3
Q ss_pred CCcchhhHHHHHHHHhhh
Q 009811 97 GDDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 97 ~d~~~kkkV~Rll~IWee 114 (525)
.+..++++|..++.-|.+
T Consensus 97 ~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 97 GHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 578899999999999997
No 11
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=84.76 E-value=2 Score=41.01 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=69.6
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-----C-hh
Q 009811 10 LAEKLSKLNC------TQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-----G-NE 77 (525)
Q Consensus 10 l~~kL~~Ln~------SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-----g-~e 77 (525)
|.+.+.+.++ .=..|-.+..-|-.....+++.+..+.++|...+....|..|.|++-++.||-.+ + .+
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 4555554443 2234555555555555678999999999998767777788899999999998432 1 36
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhc
Q 009811 78 FVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDER 115 (525)
Q Consensus 78 F~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR 115 (525)
|.+++.+++. ...+..+++++..++.-|.+-
T Consensus 86 fl~~l~~l~~-------~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 86 NCEMFSSFLE-------STPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHH-------HCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------CCCcHHHHHHHHHHHHHHHHH
Confidence 7777655432 135678999999999999964
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.49 E-value=11 Score=39.25 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=57.4
Q ss_pred hhHHHHHHHhhhcccHHHHHHhhhhHHHH-HHHhhhhhh--hhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 171 KIVSAYHLVLCEQLSEEEEMARCKSVVHR-VKKMEKDVD--IACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASR 247 (525)
Q Consensus 171 kivsa~q~l~~~~~~e~~~l~k~ksav~~-~~~~eK~vd--~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR 247 (525)
.+-.+++.++....+-+..|......++. ++++.++.+ +..... -+....+.+.|.+.++....|..-.-+..++-
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLL-QQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHH-HHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 34455566666665666666665554433 233322222 000000 01133445555555666555555444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 248 VALVSQLKEALHEQESELENVRTQMQVAQAQAEEAC 283 (525)
Q Consensus 248 ~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~ 283 (525)
++-+++-..-.+++|.+..+...++++++++++|.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444334466677777777777777777777654
No 13
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=79.37 E-value=16 Score=40.72 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
..+..++..|+.++..+.+|+++|++++.||.+..+.+....+.++.|+.
T Consensus 653 ~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L~~~~~~~~~~~~df~~ 702 (704)
T 2xs1_A 653 NLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVF 702 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678888999999999999999999999999999999999999998875
No 14
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=78.27 E-value=0.46 Score=49.06 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCcccCCCCccC
Q 009811 439 QQYLQPSGGIMT 450 (525)
Q Consensus 439 ~q~~q~~~g~~~ 450 (525)
++|.-++ |.++
T Consensus 431 ~~~~~~~-~~~~ 441 (449)
T 3iot_A 431 QSYQITA-GKLG 441 (449)
T ss_dssp ------------
T ss_pred CCcccCC-Cccc
Confidence 4444444 4443
No 15
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.52 E-value=23 Score=37.85 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=8.4
Q ss_pred HHhhhhHHH-HHHHhhhhhh
Q 009811 190 MARCKSVVH-RVKKMEKDVD 208 (525)
Q Consensus 190 l~k~ksav~-~~~~~eK~vd 208 (525)
|.++...|+ .++.|+..|+
T Consensus 91 L~k~q~~V~~~LqeLe~~l~ 110 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVA 110 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHH
Confidence 444444332 3455555444
No 16
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=76.43 E-value=4.6 Score=37.40 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=75.1
Q ss_pred HHHHHhhccCC------HHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-C-----hh
Q 009811 10 LAEKLSKLNCT------QQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-G-----NE 77 (525)
Q Consensus 10 l~~kL~~Ln~S------QeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g-----~e 77 (525)
|.+.+.+.++. =..|-.+..-|-.....+++.+..+.++|...+....|.-|-|++-+++||-.. . .+
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 55555555542 234445555555555568899999999998767777788899999999997532 1 35
Q ss_pred hHHHHHHHHHHHHHHHh--hcCCcchhhHHHHHHHHhhhccccchh--hHHHHHHhcC
Q 009811 78 FVTEFWKVLPAALKDVV--ENGDDSGKNVVSRLVNIWDERRVFGSR--ARGVKDVMLG 131 (525)
Q Consensus 78 F~~aF~~vLp~a~~~v~--~~~d~~~kkkV~Rll~IWeeR~VF~~~--i~~Lke~llg 131 (525)
|.+++.+++. .-+ ...+..+++++..+|.-|.+. |..+ |..+.+.|..
T Consensus 94 Fl~eL~kl~~----~k~~~~~~~~~Vk~kil~li~~W~~~--f~~~~~i~~~y~~Lk~ 145 (171)
T 1juq_A 94 FLNELIKVVS----PKYLGDRVSEKVKTKVIELLYSWTMA--LPEEAKIKDAYHMLKR 145 (171)
T ss_dssp HHHHHHHHHC----CCCCCTTSCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----cccCCCCCCHHHHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHH
Confidence 5555443321 111 123578899999999999975 5433 6666665543
No 17
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.51 E-value=17 Score=32.92 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-----C-hhhHHHHHHHHHHHHHHHh--
Q 009811 23 CIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-----G-NEFVTEFWKVLPAALKDVV-- 94 (525)
Q Consensus 23 SIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-----g-~eF~~aF~~vLp~a~~~v~-- 94 (525)
.|-.+..-|-.....+++.+..+.++|...+...-|.-|-|+.-+++||-.. + .+|.+++.+++ ..-|
T Consensus 31 ~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~----~~k~~~ 106 (149)
T 3g2s_A 31 SINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVV----SPKYLG 106 (149)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHH----CTTTTG
T ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHH----cccccC
Confidence 4444444444444458899999999998666666677788899999987532 1 24555533222 1111
Q ss_pred hcCCcchhhHHHHHHHHhhhccccchh--hHHHHHHhc
Q 009811 95 ENGDDSGKNVVSRLVNIWDERRVFGSR--ARGVKDVML 130 (525)
Q Consensus 95 ~~~d~~~kkkV~Rll~IWeeR~VF~~~--i~~Lke~ll 130 (525)
...+..++++|..+|.-|.+. |..+ +..+.+.|.
T Consensus 107 ~~~~~~Vk~kil~li~~W~~~--f~~~p~i~~~Y~~Lk 142 (149)
T 3g2s_A 107 SRTSEKVKNKILELLYSWTVG--LPEEVKIAEAYQMLK 142 (149)
T ss_dssp GGSCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 124678999999999999984 6433 555555443
No 18
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.13 E-value=14 Score=35.53 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=71.8
Q ss_pred HHHHHHhhccC------CHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-----C-h
Q 009811 9 ILAEKLSKLNC------TQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-----G-N 76 (525)
Q Consensus 9 ~l~~kL~~Ln~------SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-----g-~ 76 (525)
.|++.+.+.++ -=+.|-.+..-|-.....+++.+..+.++|...+.+..|.-|-|+.-+++||-.. . .
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~ 87 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK 87 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH
Confidence 45555555553 2355666666666665678999999999999767777777788999999998642 1 3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhc
Q 009811 77 EFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDER 115 (525)
Q Consensus 77 eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR 115 (525)
+|.+++.+++ . ...+..++++|..+|.-|.+.
T Consensus 88 ~fl~~l~~l~----~---~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 88 QTMEELKDLL----K---RQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHH----H---HCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c---cCCCHHHHHHHHHHHHHHHHH
Confidence 6666655443 2 245778999999999999973
No 19
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=72.66 E-value=16 Score=32.83 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhc-C-----hhhHHHHHHHHHHHHHHHhh
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRK-G-----NEFVTEFWKVLPAALKDVVE 95 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrK-g-----~eF~~aF~~vLp~a~~~v~~ 95 (525)
+.|-.+..-|-.....+++.+..+.++|...+....|.-|-|++-+++||-.. . .+|.+++.+++. .-+.
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~----~k~~ 95 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLS----PKYL 95 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTC----CSTT
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHc----cccC
Confidence 34445555555555568899999999998766767788888999999987532 1 244444332211 1010
Q ss_pred --cCCcchhhHHHHHHHHhhhccccchh--hHHHHHHhc
Q 009811 96 --NGDDSGKNVVSRLVNIWDERRVFGSR--ARGVKDVML 130 (525)
Q Consensus 96 --~~d~~~kkkV~Rll~IWeeR~VF~~~--i~~Lke~ll 130 (525)
..+..+++++..+|.-|.+. |..+ |..+.+.|.
T Consensus 96 ~~~~~~~Vk~kil~li~~W~~~--f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 96 GSWATGKVKGRVIEILFSWTVW--FPEDIKIRDAYQMLK 132 (148)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH--cCCCchHHHHHHHHH
Confidence 13678999999999999985 6433 666666554
No 20
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=71.05 E-value=15 Score=30.86 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=52.0
Q ss_pred HHHHhhhhhhh-hhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDI-ACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 199 ~~~~~eK~vd~-acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
+|..+.|.++- +|. +|+..+.+++++-+.--.+.+..++||+.+..-+.+.+.||+.-...|+.++.+.-..
T Consensus 16 KIs~ikk~L~Lr~~g--qdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKEL~~s~e~d~kdv~HLk 88 (91)
T 4aj5_A 16 KIGNIKKTLSLRNCG--QEPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNSLKELCESLEEDYKDIEHLK 88 (91)
T ss_dssp HHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454441 333 5777888999999999999999999999999999999999999888888777665543
No 21
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=70.14 E-value=79 Score=30.33 Aligned_cols=48 Identities=17% Similarity=0.361 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHH
Q 009811 76 NEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDV 128 (525)
Q Consensus 76 ~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~ 128 (525)
..|.+.||.-+..++..+ ..+.+-+..|.+++++|.-...+ ...|...
T Consensus 6 ~~f~~~fw~g~~~l~~r~-----~~g~~~~~el~~f~~eRa~iE~eYak~L~kL 54 (305)
T 2efl_A 6 MSWGTELWDQFDNLEKHT-----QWGIDILEKYIKFVKERTEIELSYAKQLRNL 54 (305)
T ss_dssp CCHHHHTTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHhHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888887555555554 24566788999999999998888 4666543
No 22
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=70.03 E-value=41 Score=27.15 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
++++....-|++.|..|+ ..|.+..++++....+++..+..-..-+..+.++|+.|-
T Consensus 10 q~~E~~N~~Le~~v~~le----------~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEME----------QRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444455555555444 466777777777777777777777888888888888774
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.81 E-value=57 Score=28.54 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
.+.|...|+.....+.+.-+.+++....+..|-..|+++....+..-+....+...-+-.=+.+..|++.+++..
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888888888888888888888777777666655555555555667788888887753
No 24
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.69 E-value=39 Score=27.71 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
+++++....-|++.|..|+ ..|.+..++++....+++..++.-..-+..+.++|+.|-
T Consensus 15 lq~~E~rN~~Le~~v~~le----------~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAME----------RSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555666666666666555 466777777777777777777777888888888888773
No 25
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=67.51 E-value=14 Score=33.48 Aligned_cols=100 Identities=9% Similarity=0.153 Sum_probs=63.1
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHHhcccchHHHHHHHHHHHhc-CCcCcccchhhhhHHHHHHhhhc-C-----h
Q 009811 10 LAEKLSKLNC------TQQCIETLSHWCIFHRSKAELVVATWDKQFHS-SQLVQKVPLLYLANDILQNSKRK-G-----N 76 (525)
Q Consensus 10 l~~kL~~Ln~------SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~k-s~~~kKL~lLYLaNDVlQnSkrK-g-----~ 76 (525)
+...+.+.++ -=+.|-.+..-|-.....+++.+..+.++|+. .+....|.-|-|++-+++||-.. . .
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 4455555543 22344555554444456789999999999974 45555677888999999997322 1 2
Q ss_pred hhHHHHHHHHHHHHHHHhhcC--CcchhhHHHHHHHHhhhc
Q 009811 77 EFVTEFWKVLPAALKDVVENG--DDSGKNVVSRLVNIWDER 115 (525)
Q Consensus 77 eF~~aF~~vLp~a~~~v~~~~--d~~~kkkV~Rll~IWeeR 115 (525)
+|.+++ +++.+.... +..+++++..+|.-|.+.
T Consensus 97 ~fl~e~------Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 97 DFVESV------LVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHH------THHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 444442 222222222 357899999999999984
No 26
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=66.15 E-value=22 Score=37.97 Aligned_cols=20 Identities=10% Similarity=0.365 Sum_probs=9.7
Q ss_pred HHHhhhhHHHH-HHHhhhhhh
Q 009811 189 EMARCKSVVHR-VKKMEKDVD 208 (525)
Q Consensus 189 ~l~k~ksav~~-~~~~eK~vd 208 (525)
.|.|+.+.|+. ++.||..|+
T Consensus 85 ~L~kye~~V~~dl~~Le~~l~ 105 (461)
T 3ghg_B 85 ALLQQERPIRNSVDELNNNVE 105 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchhhHHHHHHHHHH
Confidence 45555555542 444444444
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.84 E-value=48 Score=38.99 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=4.4
Q ss_pred HHHhhhcccc
Q 009811 109 VNIWDERRVF 118 (525)
Q Consensus 109 l~IWeeR~VF 118 (525)
++-|..|+-|
T Consensus 874 ~Rg~l~R~~y 883 (1080)
T 2dfs_A 874 VRGWLARVHY 883 (1080)
T ss_dssp HTTTHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 28
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=65.27 E-value=55 Score=26.69 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQL---KEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~L---keAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
....+++++..+.-+...-..++.+......|+..- .+.-...+.+++.++..|... .+.+.+.+++|++
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L---~~~~~~R~~~L~~ 110 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEAL---RVESMERQSRLHD 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344445554444444444444444445555555321 111122344555555555433 4444555555544
No 29
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=64.71 E-value=41 Score=35.53 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 76 NEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 76 ~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
..|.+.||.. .-|..++. .-..+.+-+..|++++++|.-...+ ...|..
T Consensus 12 ~~f~~~FW~~--~G~~~L~~-r~~~g~~~~~el~~f~keRa~iE~eYAk~L~k 61 (486)
T 3haj_A 12 EVSSDSFWEV--GNYKRTVK-RIDDGHRLCSDLMNCLHERARIEKAYAQQLTE 61 (486)
T ss_dssp ----CCTTST--TTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCC--cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778775 22222221 1124567788899999999988887 355654
No 30
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=63.55 E-value=59 Score=26.42 Aligned_cols=89 Identities=9% Similarity=0.051 Sum_probs=42.1
Q ss_pred HHHhhhhhhhhhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 009811 200 VKKMEKDVDIACTNAKDPK-RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQL---KEALHEQESELENVRTQMQVA 275 (525)
Q Consensus 200 ~~~~eK~vd~acs~~~d~r-~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~L---keAL~~qE~~lE~vr~~~q~a 275 (525)
+.+.|+.+...-..+.|.. ...++++++..+.-+...-..++.+......|+..- .+.-...+.+++.++..|...
T Consensus 18 L~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L 97 (119)
T 3uun_A 18 LLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECL 97 (119)
T ss_dssp HHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443222333332 455555555555555555555555555666665421 112223445555555555443
Q ss_pred HHHHHHHHHHHHhhcc
Q 009811 276 QAQAEEACNMRKRLND 291 (525)
Q Consensus 276 q~~~~ra~~lr~~Ld~ 291 (525)
...+...+++|++
T Consensus 98 ---~~~~~~R~~~Le~ 110 (119)
T 3uun_A 98 ---RVASMEKQSNLHR 110 (119)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 3444455555543
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.50 E-value=25 Score=38.15 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=40.5
Q ss_pred ccHHHHHHhhhhHHHHHHHhhhhhhhhhc----CCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 184 LSEEEEMARCKSVVHRVKKMEKDVDIACT----NAKDP--KRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEA 257 (525)
Q Consensus 184 ~~e~~~l~k~ksav~~~~~~eK~vd~acs----~~~d~--r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeA 257 (525)
.|....|++.|..++.+.+..|+++.... ..+.. ....+-..+.+....|+.-|..|+..+..-...|..|+..
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655555555443211 11100 0112222222233344444455555555555666677777
Q ss_pred HHHHHHHHHHHH
Q 009811 258 LHEQESELENVR 269 (525)
Q Consensus 258 L~~qE~~lE~vr 269 (525)
|+++..+..++.
T Consensus 140 Ledq~~kIQRLE 151 (562)
T 3ghg_A 140 VRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766655444443
No 32
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=62.74 E-value=61 Score=26.35 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
+..+++++++.+..+....+++..+......|++.=--+-.........+...| +.+.+.+...|++|++
T Consensus 38 v~~Llkkh~~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w---~~L~~~~~~Rr~~L~~ 107 (107)
T 2spc_A 38 VEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERW---RHLKEGLIEKRSRLGD 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcC
Confidence 789999999999999999888888888888777653222333333344444333 5566667777777753
No 33
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=61.06 E-value=2 Score=43.49 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 009811 105 VSRLVNI 111 (525)
Q Consensus 105 V~Rll~I 111 (525)
+.|.+.|
T Consensus 131 idRy~aI 137 (448)
T 2z73_A 131 IDRYNVI 137 (448)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 3333333
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.86 E-value=83 Score=33.34 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEA 282 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra 282 (525)
+++++....+..-..+++.......+....|++-.++.|..++..+.+..+.+...+++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444455555555555554444444444
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.12 E-value=57 Score=34.02 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 218 KRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269 (525)
Q Consensus 218 r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr 269 (525)
..+.+.++|+.+...|+.-|+ .-...|..|+.-|+.+..+..++.
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~-------~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVI-------EQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677666666665554 222244455555555544443333
No 36
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=57.20 E-value=86 Score=26.29 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEAS 246 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~a 246 (525)
...++++++++-...+..|+.||....+
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777788888877776544
No 37
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.87 E-value=3.1e+02 Score=36.32 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 261 QESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 261 qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.+.+.+.+......+....+++..+++.-+.
T Consensus 1971 ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~ 2001 (3245)
T 3vkg_A 1971 AEIKQKDARELQVQLDVRNKEIAVQKVKAYA 2001 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555544433
No 38
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=55.04 E-value=1.5e+02 Score=29.24 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 100 SGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
.+.+-+..|.+++++|.-...+ ...|..
T Consensus 31 ~g~~~~~el~~f~keRa~iE~eYak~L~k 59 (337)
T 2x3v_A 31 DGHRLCNDLMSCVQERAKIEKAYAQQLTD 59 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888877776 355544
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.74 E-value=95 Score=33.73 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=3.1
Q ss_pred HHHHhhcc
Q 009811 284 NMRKRLND 291 (525)
Q Consensus 284 ~lr~~Ld~ 291 (525)
+++|+|+.
T Consensus 180 ~~QKQLeQ 187 (562)
T 3ghg_A 180 DQQKQLEQ 187 (562)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=53.37 E-value=2.2e+02 Score=33.53 Aligned_cols=11 Identities=9% Similarity=0.141 Sum_probs=4.3
Q ss_pred hHHHHHHHHhh
Q 009811 103 NVVSRLVNIWD 113 (525)
Q Consensus 103 kkV~Rll~IWe 113 (525)
+.+.+|-..|+
T Consensus 888 ~aai~iQs~~R 898 (1080)
T 2dfs_A 888 KAIVYLQCCYR 898 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33434433443
No 41
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=52.96 E-value=1.6e+02 Score=28.15 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHhhhccccchh-hHHHHH
Q 009811 100 SGKNVVSRLVNIWDERRVFGSR-ARGVKD 127 (525)
Q Consensus 100 ~~kkkV~Rll~IWeeR~VF~~~-i~~Lke 127 (525)
.+.+-+..|.+.+++|.-...+ ...|..
T Consensus 18 ~g~~~~~el~~f~keRa~iE~eYak~L~k 46 (301)
T 2efk_A 18 WGLDLLDRYVKFVKERTEVEQAYAKQLRS 46 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999988877 455554
No 42
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=52.84 E-value=21 Score=29.27 Aligned_cols=47 Identities=32% Similarity=0.363 Sum_probs=41.0
Q ss_pred CCHHHHHHHHh--hccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhc
Q 009811 5 FSEQILAEKLS--KLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHS 51 (525)
Q Consensus 5 Fsed~l~~kL~--~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~k 51 (525)
-|.+.|.+-|. .|+...+-|..+..-|+.|+..+.++|+-|+-+...
T Consensus 3 vs~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s 51 (78)
T 4e2i_2 3 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTS 51 (78)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 67888888888 566888999999999999999999999999877543
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.16 E-value=81 Score=26.30 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSK-ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 219 ~~~l~k-eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
|..|++ +.+++...|..-++.++.. |+.|++-+...+.+++..+..+
T Consensus 60 G~vfv~~~~~ea~~~L~~~~e~ie~~-------i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 60 GTLIVKTTKDKAVAELKEKIETLEVR-------LNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 5555555555555555433 3344444444444444444443
No 44
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=51.96 E-value=1.3e+02 Score=26.93 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 263 SELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 263 ~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
.....-+....-+|++.+++..++.++.++
T Consensus 93 ~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~ 122 (135)
T 1i6z_A 93 DSRLKRKNLVKKVQVFLAECDTVEQYICQE 122 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556677778877777777644
No 45
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.93 E-value=96 Score=25.28 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 229 EENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 229 ~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
....|.+.-..|. ..+.+||..+.+.-.+++...+++.+..+....+-.|+.++-+.|
T Consensus 17 EN~eLl~TKNaLn---vvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 17 ENTQLLETKNALN---IVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 678899999999999999888888888777666656666554443
No 46
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.67 E-value=1.4e+02 Score=39.27 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQ---ESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q---E~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
.+-+++++++..++...++|+...+.-..|-+.|.+.-.++ ..+.+.++.....++...+||..|-.-|.++
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34445555555555555555544443333333333333333 3344445555556667777777777777554
No 47
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.50 E-value=1e+02 Score=25.25 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 230 ENMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 230 e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
+.-++.+-+.|++.+..|..|-......+++.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=49.80 E-value=1.1e+02 Score=26.35 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=35.5
Q ss_pred HHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQ 253 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~ 253 (525)
.++.+.+++|.+.. ....+.-++.+....+.++-.+++.....|..+-+.
T Consensus 21 ~I~~LR~qid~~~~-----e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 21 EMRELRRQVDQLTN-----DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46777777775321 145777788888888888888888887777766553
No 49
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=48.53 E-value=1.4e+02 Score=26.03 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 234 KQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQA 277 (525)
Q Consensus 234 ke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~ 277 (525)
++.-++|++....|..|.+.+++.-++.+.+...+..+.+.++.
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~ 59 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEI 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666655555555555444444433
No 50
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=47.61 E-value=7.7 Score=40.18 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=73.7
Q ss_pred CCcCcccchhhhhHHHHHHhhhc--ChhhHHHHHHH-HHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchhhHHHHHH
Q 009811 52 SQLVQKVPLLYLANDILQNSKRK--GNEFVTEFWKV-LPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDV 128 (525)
Q Consensus 52 s~~~kKL~lLYLaNDVlQnSkrK--g~eF~~aF~~v-Lp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~i~~Lke~ 128 (525)
...+-++..|.|+|-||..+-.- .-.++.+|... |..++..+....+ ..+..-+++|++..--+ ...+.+.
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~----~~L~~Qi~~fe~~~~eD--~~el~~r 240 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIEN----EDMKVQLCVFDEQGDED--FFDLKGR 240 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCC----HHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCC----hhHHHHHHHHHHHHHHH--HHHHHhh
Confidence 34456788999999999886421 24677888764 7777776643333 35677788888764333 2222221
Q ss_pred ---hcCC-CCCCCccccccCCCCcccccccCCccccccccCCCchhhhHHHHHHHhhhcccHHHH---HHhhhhHHHHHH
Q 009811 129 ---MLGG-EVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEE---MARCKSVVHRVK 201 (525)
Q Consensus 129 ---llg~-~~p~~l~~~~kk~~~~~k~~~~ds~~~~~k~~~g~~~ekivsa~q~l~~~~~~e~~~---l~k~ksav~~~~ 201 (525)
+.++ ++| .++. + ....++...+.-.-+.|.+|.++--..|.... +.-.-+.|.++-
T Consensus 241 ~~~i~~d~~d~--~~~~--------~-------~l~~~~~~t~~~~~flSiLQhLLli~~d~~~~~~~~~Lid~~v~qiv 303 (386)
T 2bnx_A 241 LDDIRMEMDDF--GEVF--------Q-------IILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIV 303 (386)
T ss_dssp HHHHHHHCCCH--HHHH--------H-------HHHHHHTTSTHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCH--HHHH--------H-------HHHHHHcCCCchhHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHH
Confidence 1111 110 0000 0 00111111223345677777755443332211 111233344444
Q ss_pred HhhhhhhhhhcC-CCCcchhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 202 KMEKDVDIACTN-AKDPKRKTLSK------ELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRT 270 (525)
Q Consensus 202 ~~eK~vd~acs~-~~d~r~~~l~k------eLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~ 270 (525)
.-.+.+|+.-.. .-.-....+++ ++++.+...+++.++|+.+..+|..+...|.++-.+++.+++..+.
T Consensus 304 l~~~~~Dpd~~~~~l~~~v~~l~d~l~~~~~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~~~~~~~~~~ 379 (386)
T 2bnx_A 304 LHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQG 379 (386)
T ss_dssp TCGGGCCCCTTCSCCCCCCTTTC-----CTHHHHHHTTTCC-----------------------------------
T ss_pred hccCCCCCCcccccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334421110 00001223333 3455566677778888888889988887776665555555555444
No 51
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.91 E-value=1.1e+02 Score=25.17 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLK 241 (525)
Q Consensus 225 eLee~e~~lke~IeqLe 241 (525)
+.+++...+..-++.++
T Consensus 62 ~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQ 78 (107)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 52
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=46.58 E-value=79 Score=31.55 Aligned_cols=176 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhHHHHH--HHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcCCCCCCCccccccCCCCcccccc
Q 009811 77 EFVTEFW--KVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVK 153 (525)
Q Consensus 77 eF~~aF~--~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg~~~p~~l~~~~kk~~~~~k~~~ 153 (525)
.|.+.|| .-+..++..+ ..+.+-+..|.+++++|.-...+ .+.|......-..
T Consensus 20 ~f~~~FW~~~g~~~L~~r~-----~~g~~~~~el~~f~keRa~IE~eYak~L~kLakk~~~------------------- 75 (350)
T 3aco_A 20 VSSDSFWEVGNYKRTVKRI-----DDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQ------------------- 75 (350)
T ss_dssp ---CCTTSTTTTHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred cccccCCCCCCcHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q ss_pred cCCccccccccCCCchhhhHHHHHHHhhhcccHHHHHHhhhhHHHH-----HHHhhhhhhhhhcCCCCcchhHHHHHHHH
Q 009811 154 RDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHR-----VKKMEKDVDIACTNAKDPKRKTLSKELEE 228 (525)
Q Consensus 154 ~ds~~~~~k~~~g~~~ekivsa~q~l~~~~~~e~~~l~k~ksav~~-----~~~~eK~vd~acs~~~d~r~~~l~keLee 228 (525)
+...+.....+..+|..++.+.-............+.. +..+.++.-.--..+.-+..+.+..+++.
T Consensus 76 --------~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k 147 (350)
T 3aco_A 76 --------LVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRK 147 (350)
T ss_dssp --------HHHTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHH
T ss_pred --------hccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 229 EENMLKQCIEKLKSVEASRVALVSQLKEALHEQ----------ESELENVRTQMQVAQAQAEEACN 284 (525)
Q Consensus 229 ~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q----------E~~lE~vr~~~q~aq~~~~ra~~ 284 (525)
..+.+......|++.-..+..++..++.|.... ..+++..+..+..++..++++.+
T Consensus 148 ~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~ 213 (350)
T 3aco_A 148 AQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKE 213 (350)
T ss_dssp HTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHH
No 53
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=45.14 E-value=26 Score=36.72 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=62.1
Q ss_pred HHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 009811 29 HWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRL 108 (525)
Q Consensus 29 ~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rl 108 (525)
++|-...+-+..+++...++-=++...|-+.+|..+.+|+.... -.+|.+++..+|..+..+-+...-+...|.
T Consensus 285 qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~------~~~f~~i~~~lF~~la~ci~S~hfqVAErA 358 (392)
T 2jak_A 285 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIE------PSEFVKIMEPLFRQLAKCVSSPHFQVAERA 358 (392)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCC------HHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44444455566666666555556788888999999999996521 356788888888888776666777899999
Q ss_pred HHHhhhcccc
Q 009811 109 VNIWDERRVF 118 (525)
Q Consensus 109 l~IWeeR~VF 118 (525)
+.+|....+.
T Consensus 359 L~~wnNe~i~ 368 (392)
T 2jak_A 359 LYYWNNEYIM 368 (392)
T ss_dssp HGGGGCHHHH
T ss_pred HHHhCcHHHH
Confidence 9999987655
No 54
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=45.06 E-value=93 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 009811 236 CIEKLKSVEASRVALVSQLKEALHE---QESELENVRTQMQVAQAQAEEACNMRKRLNDEDY 294 (525)
Q Consensus 236 ~IeqLe~~~~aR~~Lis~LkeAL~~---qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~~ 294 (525)
+++.|+.++.+=..+++.|.+.... +.+....+..-+.+.+.+++|+..+.++++....
T Consensus 7 f~~~L~Diy~aE~Q~~~aL~~ma~~~a~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~~~ 68 (166)
T 3hiu_A 7 LVKWLQDAYAMEKEAETMMAAMASRIEHYPELKRRIEQHVEETQQQSAGVQRCLELLNGSIP 68 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5666666666666666677666543 5666677777788889999999999999987643
No 55
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.63 E-value=1.4e+02 Score=31.85 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=7.9
Q ss_pred HHHhhhhHHHHHHHhhhh
Q 009811 189 EMARCKSVVHRVKKMEKD 206 (525)
Q Consensus 189 ~l~k~ksav~~~~~~eK~ 206 (525)
.+++.+..|..+.+.-++
T Consensus 66 rI~kLkn~L~~~s~s~~~ 83 (491)
T 1m1j_A 66 RIDNIRQQLADSQNKYKT 83 (491)
T ss_dssp HHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHhhcch
Confidence 444555544444333333
No 56
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.27 E-value=1.9e+02 Score=30.39 Aligned_cols=38 Identities=8% Similarity=0.136 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 232 MLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVR 269 (525)
Q Consensus 232 ~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr 269 (525)
.+.+-+.+|++.+.....-|..|+..|...+.+++.++
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~ 125 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLK 125 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444555566666666666666666665555444443
No 57
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=43.60 E-value=2e+02 Score=26.58 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRT 270 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~ 270 (525)
..+.++.+.-..++...+.+......|..+...|..+....+..++.+..
T Consensus 79 ~~l~~i~~~~~~Y~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 128 (258)
T 2yfa_A 79 KLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQ 128 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444454444444444444443
No 58
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=43.22 E-value=49 Score=24.83 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 229 EENMLKQCIEKLKSVEASRVALVSQL 254 (525)
Q Consensus 229 ~e~~lke~IeqLe~~~~aR~~Lis~L 254 (525)
-+++..+|++.|...+..+..|-+.|
T Consensus 4 ~errr~e~ld~l~~LEkqF~~LkEql 29 (49)
T 2xus_A 4 YERRRSECVSEMLDLEKQFSELKEKL 29 (49)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777776666666555554
No 59
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.01 E-value=33 Score=27.36 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 237 IEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQ 276 (525)
Q Consensus 237 IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq 276 (525)
++.|.+....+..+|+.|+..|.+.+....+++.++.-++
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455666666666666666655555555544433
No 60
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.01 E-value=3.3e+02 Score=28.54 Aligned_cols=10 Identities=0% Similarity=0.255 Sum_probs=4.2
Q ss_pred HHHHhhhhhh
Q 009811 199 RVKKMEKDVD 208 (525)
Q Consensus 199 ~~~~~eK~vd 208 (525)
.+..|.|.+.
T Consensus 56 ~v~~Lvk~iq 65 (409)
T 1m1j_C 56 SIEYLIQHIK 65 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 61
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.93 E-value=1.2e+02 Score=23.07 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
...+..++++...++.+-|+.+- .|-.=+ +...+....+...++.|...++.|+++|
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl----~RgekL----------d~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVA----ERGERL----------TSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677777777766666442 222222 2233333445566788999999999876
No 62
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.62 E-value=88 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 246 SRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 246 aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
.+..+|..|+..|.+.+.....+++.+
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666555554444
No 63
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=40.48 E-value=1.6e+02 Score=31.01 Aligned_cols=89 Identities=9% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
Q 009811 198 HRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASR------------------VALVSQLKEALH 259 (525)
Q Consensus 198 ~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR------------------~~Lis~LkeAL~ 259 (525)
+.+-++++.||..... .+..++++++...-..++|..|+.....| .+-+..++..+.
T Consensus 27 d~L~kye~~V~~~l~~-----L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 27 DFLSTYQTKVDKDLQS-----LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHH-----HHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 260 EQESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 260 ~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.++..+..++.++......++++.+.-.+|..
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.55 E-value=1.9e+02 Score=25.07 Aligned_cols=8 Identities=13% Similarity=0.729 Sum_probs=3.3
Q ss_pred HHhhhhhh
Q 009811 201 KKMEKDVD 208 (525)
Q Consensus 201 ~~~eK~vd 208 (525)
..++.+++
T Consensus 46 q~L~~el~ 53 (129)
T 3tnu_B 46 QRLRAEID 53 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 65
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=39.22 E-value=2.8e+02 Score=27.19 Aligned_cols=72 Identities=10% Similarity=0.210 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Q 009811 220 KTLSKELEEEENMLKQCIEKLKS-----VEASRVALVSQLKEALHEQESELENVRTQMQVA-----QAQAEEACNMRKRL 289 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~-----~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~a-----q~~~~ra~~lr~~L 289 (525)
..+-+++++....|.-+.+.|++ ++..|..|.-..+++-.....-++.++..+.-+ .....++.+||++|
T Consensus 62 ~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 62 TQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777777777776643 333444444444444444444555555554333 22345777888888
Q ss_pred cc
Q 009811 290 ND 291 (525)
Q Consensus 290 d~ 291 (525)
.-
T Consensus 142 ~P 143 (273)
T 3s84_A 142 AP 143 (273)
T ss_dssp GG
T ss_pred hh
Confidence 53
No 66
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.14 E-value=1.9e+02 Score=25.09 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=3.3
Q ss_pred HHhhhhhh
Q 009811 201 KKMEKDVD 208 (525)
Q Consensus 201 ~~~eK~vd 208 (525)
..++.+++
T Consensus 48 q~L~~el~ 55 (131)
T 3tnu_A 48 QNLEIELQ 55 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.80 E-value=1.2e+02 Score=24.78 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 009811 222 LSKELEEEENML 233 (525)
Q Consensus 222 l~keLee~e~~l 233 (525)
+-..+.+.+...
T Consensus 15 Le~~l~e~E~~~ 26 (86)
T 1x8y_A 15 KEAKLRDLEDSL 26 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333343333333
No 68
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=38.53 E-value=2.5e+02 Score=26.20 Aligned_cols=75 Identities=11% Similarity=0.147 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
...|...|+.-..+-.+-........+.+..+.+.-.+|..-|+.......+....+++-.+++..+..||++-.
T Consensus 70 lTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~ 144 (201)
T 3u0c_A 70 LTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELD 144 (201)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444445444444333333333333334555566666677777777777777788888888888889999998763
No 69
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=38.38 E-value=30 Score=27.33 Aligned_cols=49 Identities=8% Similarity=0.363 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009811 192 RCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 192 k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe 241 (525)
||...+..+++|.|++-+.-+-.+.+ ...|.+.+.-+...+++|+-.++
T Consensus 12 kY~~LL~VIeEmgkdIrpTYaGsk~~-~ERLkR~I~hAr~LVrECl~E~e 60 (65)
T 2kw6_A 12 KYAELLAIIEELGKEIRPTYAGSKSA-MERLKRGIIHARGLVRECLAETE 60 (65)
T ss_dssp HHHHHHHHHHHHTTTHHHHHTTCHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccchhhccCcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666778999999998754332222 67888889889999999987655
No 70
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.30 E-value=2.7e+02 Score=26.62 Aligned_cols=43 Identities=9% Similarity=0.209 Sum_probs=23.0
Q ss_pred HHHHhhhhhhhhhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPK-RKTLSKELEEEENMLKQCIEKLKSVEA 245 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r-~~~l~keLee~e~~lke~IeqLe~~~~ 245 (525)
+++++++.++.+- +++ ...+.++++........+-+.+.....
T Consensus 75 ri~~~~~~l~~v~----~~kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 75 KIASIQKKMSEIK----SERELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHCS----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666665422 222 566777776666555555444443333
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.22 E-value=2.5e+02 Score=26.06 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 192 RCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVAL 250 (525)
Q Consensus 192 k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~L 250 (525)
+|++-.+...++.|... .+.+.+...+..+++..+.+......|..|
T Consensus 21 kLk~EsE~~~rlkK~~t------------El~k~~~~~E~~~rELq~~~~~L~~~k~~L 67 (168)
T 3o0z_A 21 LLRTESDTAVRLRKSHT------------EMSKSISQLESLNRELQERNRILENSKSQT 67 (168)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554445555555543 334444555555555555554444444433
No 72
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=37.73 E-value=1.8e+02 Score=26.60 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=48.4
Q ss_pred HHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENV--RTQMQVAQ 276 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~v--r~~~q~aq 276 (525)
.++.|-..||..|.... ..-.+|+|-+++.|..-+. +||+.+|-|.++..+.+++. |..+..|+
T Consensus 60 ~LR~Ll~sVd~~~~~lp----~s~~~EIema~k~L~kDM~----------eLIs~MkLAqq~~~TtL~eEyrr~MLsaaH 125 (153)
T 3gm3_A 60 TLRKLIGSVDDLLPSLP----SSSRTEIEGTQKLLNKDLA----------ELINKMRLAQQNAVTSLSEECKRQMLTASH 125 (153)
T ss_dssp HHHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 45666677887776552 3455888888888775554 56788888876664433333 44455556
Q ss_pred HHHHHHHHHHHhhc
Q 009811 277 AQAEEACNMRKRLN 290 (525)
Q Consensus 277 ~~~~ra~~lr~~Ld 290 (525)
..+-.++||..=.|
T Consensus 126 ~LA~DaKNLlD~VD 139 (153)
T 3gm3_A 126 TLAVDAKNLLDAVD 139 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555554443
No 73
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.70 E-value=1.1e+02 Score=22.03 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKE 256 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~Lke 256 (525)
++..|++.-..+..-.+-|++..--..+||.+|++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylek 38 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEK 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHH
Confidence 34444444444444444444444444555555543
No 74
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.67 E-value=1.8e+02 Score=23.86 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESE 264 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~ 264 (525)
.|..-|+...+......+.|.++..+-..+-+.|+++-...++.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444445555444444333
No 75
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=35.52 E-value=1.6e+02 Score=23.04 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=25.6
Q ss_pred HHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009811 199 RVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 199 ~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe 241 (525)
.+..|+..++..+..=.......|...+++....++.+++.|+
T Consensus 31 ~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 73 (93)
T 4ioe_A 31 QINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILE 73 (93)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777655432222356777777766666666666554
No 76
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.33 E-value=2.6e+02 Score=25.51 Aligned_cols=42 Identities=26% Similarity=0.161 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQES 263 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~ 263 (525)
.+..|+...+.++..|..|+.....+.+++..|++.+....-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLql 110 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTI 110 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666777777666665544433
No 77
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=35.04 E-value=2e+02 Score=26.47 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811 234 KQCIEKLKSVEASRVALVSQLKEALHE---QESELENVRTQMQVAQAQAEEACNMRKRLNDED 293 (525)
Q Consensus 234 ke~IeqLe~~~~aR~~Lis~LkeAL~~---qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~ 293 (525)
.-+++.|+.++.+=..+++.|.+.... +.+....+..-+.+.+.+++|+..+.++++...
T Consensus 8 dlfi~~L~Diy~aE~Q~~~aL~~ma~~~a~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~~ 70 (171)
T 3ogh_B 8 EHYHDWLRDAHAMEKQAESMLESMASRIDNYPELRARIEQHLSETKNQIVQLETILDRNDISR 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666666666666666666666543 566666777777888899999999999987653
No 78
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.58 E-value=53 Score=26.61 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 009811 235 QCIEKLK 241 (525)
Q Consensus 235 e~IeqLe 241 (525)
+||..|+
T Consensus 47 ~yI~~L~ 53 (80)
T 1nlw_A 47 LHIKKLE 53 (80)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444333
No 79
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=33.90 E-value=2.3e+02 Score=26.04 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEA--LHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeA--L~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
|..++.-=.+...+.++|.+ |+.....=.+|+..--+| +.--+..--..++-++.|+++++.++++-+.-
T Consensus 78 WqvIi~~R~E~~d~k~e~~r-les~w~~a~~l~e~aAEaAy~sGAd~asvta~~~iq~AqsqV~~~r~~s~~a 149 (162)
T 1g73_A 78 WQVIIGARAEMTSKHQEYLK-LETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKA 149 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433 444333333333332222 11115566677888889999999988886654
No 80
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=33.11 E-value=1.6e+02 Score=22.35 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
...+..++++...++.+-|+.+- .|-.=+ +...+....+...++.|...++.+++++
T Consensus 6 l~~v~~~l~ev~~iM~~NI~~vl----~RGekL----------d~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 6 LQQTQAQVDEVVDIMRVNVDKVL----ERDQKL----------SELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666666442 222111 2223333444556788999999998875
No 81
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.82 E-value=1.1e+02 Score=21.87 Aligned_cols=30 Identities=43% Similarity=0.539 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 233 LKQCIEKLKSVEASRVALVSQLKEALHEQESELE 266 (525)
Q Consensus 233 lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE 266 (525)
++.+|..|+ .|..-+..|++-|.+-+.++|
T Consensus 8 lknyiqele----ernaelknlkehlkfakaele 37 (46)
T 3he4_B 8 LKNYIQELE----ERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHhHHHHhHHHHHHHHHHHHH
Confidence 344555554 445555566666666655554
No 82
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.52 E-value=84 Score=26.88 Aligned_cols=46 Identities=30% Similarity=0.343 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHhh--ccCCHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 009811 4 VFSEQILAEKLSK--LNCTQQCIETLSHWCIFHRSKAELVVATWDKQF 49 (525)
Q Consensus 4 ~Fsed~l~~kL~~--Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l 49 (525)
+-|.+.+.+-|+. |+.+-+-|..|..-|+.|+-.+.++|+.|+-+-
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFs 72 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFC 72 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4577888888884 557889999999999999999999999999763
No 83
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=30.18 E-value=48 Score=29.84 Aligned_cols=54 Identities=30% Similarity=0.303 Sum_probs=34.2
Q ss_pred cccchhhhhHHHHHHhhh-c---------C----hhhHHHHHHHHHHHHHHHhh-----cCCcchhhHHHHHH
Q 009811 56 QKVPLLYLANDILQNSKR-K---------G----NEFVTEFWKVLPAALKDVVE-----NGDDSGKNVVSRLV 109 (525)
Q Consensus 56 kKL~lLYLaNDVlQnSkr-K---------g----~eF~~aF~~vLp~a~~~v~~-----~~d~~~kkkV~Rll 109 (525)
-..|-||+||-.+|-|+- . + .+|...|.+++-..++...+ ..|...++.++.|+
T Consensus 71 eqFHgfyianawvqlsrVaQ~iaE~~d~d~e~~~~EY~~l~~rv~~~~lKe~vKkLKKARtdr~m~nsfk~V~ 143 (145)
T 2pv4_A 71 CVFHGFYLANAWIQLSIVARDISELQDTDEAIAEQEYSGLYVRVAEAALKESVKKLKKARTDRSMYNSMREVM 143 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHTTTTSCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHh
Confidence 457889999999997763 1 1 36777787776666655442 12444444444444
No 84
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.87 E-value=3.6e+02 Score=28.10 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=26.9
Q ss_pred cHHHHHHhhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009811 185 SEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKS 242 (525)
Q Consensus 185 ~e~~~l~k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~ 242 (525)
+....+++.+..|..+.+.-++++......++. ++.-++...+.+.++.++.+.|+.
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~-lk~~~~q~~dndn~~~e~s~eLe~ 120 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVEL-MRGDFAKANNNDNTFKQINEDLRS 120 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHH
Confidence 444455555555555544444444322222222 344444555555556666665553
No 85
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.45 E-value=1.2e+02 Score=24.54 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 248 VALVSQLKEALHEQESELENVRTQ 271 (525)
Q Consensus 248 ~~Lis~LkeAL~~qE~~lE~vr~~ 271 (525)
...|+.|.+++..|..+.+..+.+
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556655555555444433
No 86
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.25 E-value=1.6e+02 Score=23.80 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESEL 265 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~l 265 (525)
+.+||..-+-..+.|+.|..++..-...|+.|++.+....+++
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666555555555555555554444433
No 87
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=29.19 E-value=65 Score=25.72 Aligned_cols=49 Identities=10% Similarity=0.356 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009811 192 RCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 192 k~ksav~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe 241 (525)
||...+..++++.|++.+.-.-.+. ....|.+.+.-+...+++|+-.++
T Consensus 16 KY~~LL~vIeEmgkdirPTyagsks-~~ERLkRgI~hAr~LVRECl~e~e 64 (69)
T 2m1l_A 16 TYTDLLSVIEEMGKEIRPTYAGSKS-AMERLKRGIIHARALVRECLAETE 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccccchhhcCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567789999999874332221 156788888888888888887554
No 88
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.92 E-value=2.3e+02 Score=23.63 Aligned_cols=20 Identities=10% Similarity=0.435 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKL 240 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqL 240 (525)
..+.+++..-.-..++|+++
T Consensus 49 ~~i~~ie~~ldEA~eLl~qM 68 (102)
T 2qyw_A 49 KLVRDFDEKQQEANETLAEM 68 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 89
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=28.62 E-value=2.1e+02 Score=22.42 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
...+..++++...++.+-|+.+- .|-+=++ ...+....+...+..|-..++.+++++
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL----~RgekLd----------~L~~ks~~L~~~s~~F~~~a~~l~r~~ 66 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVI----ERGERLD----------ELQDKSESLSDNATAFSNRSKQLRRQM 66 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHH----HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888777553 2322222 223333445566788888999998886
No 90
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=28.36 E-value=78 Score=28.57 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcC-CcCcccchhhhhHHHHHHhhhcChhhHHHHH--HHHHHH-HHHHhh--
Q 009811 22 QCIETLSHWCIFHRSKAELVVATWDKQFHSS-QLVQKVPLLYLANDILQNSKRKGNEFVTEFW--KVLPAA-LKDVVE-- 95 (525)
Q Consensus 22 eSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks-~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~--~vLp~a-~~~v~~-- 95 (525)
+.|-.+..-|-.....+++.+..+.++|... +...-+.-|-|+.-+++||-. .|..++. .+|-++ ++.+-.
T Consensus 35 ~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~---~fh~eiask~Fl~e~L~kl~~~~~ 111 (152)
T 3rru_A 35 GQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP---SFQSLIVKKEFVKENLVKLLNPRY 111 (152)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH---HHHHHHSSHHHHTTTTGGGGSGGG
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH---HHHHHHHhhHhHHHHHHHHhcCCC
Confidence 3455555555555567899999999999742 222224456788888888643 3333322 122221 111111
Q ss_pred cCCcchhhHHHHHHHHhhh
Q 009811 96 NGDDSGKNVVSRLVNIWDE 114 (525)
Q Consensus 96 ~~d~~~kkkV~Rll~IWee 114 (525)
..+..++++|..+|.-|.+
T Consensus 112 ~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 112 NLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 1244789999999999997
No 91
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=28.21 E-value=3e+02 Score=26.96 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQ--ESELENVRTQMQVAQAQAEEACNMRKRLND 291 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q--E~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~ 291 (525)
.+--||.--|.++..++..|++....-+..+..+-+.|+.. ..+++.++...+.-..|..++..+|+-|++
T Consensus 120 ~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~lee 192 (261)
T 3rkg_A 120 SQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDE 192 (261)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999988877766665555444444322 356666665555567777776666666543
No 92
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=28.19 E-value=1.1e+02 Score=22.01 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 245 ASRVALVSQLKEALHEQESELENVRTQMQ 273 (525)
Q Consensus 245 ~aR~~Lis~LkeAL~~qE~~lE~vr~~~q 273 (525)
..|+.+|..|++-|...|.++-+++.+.|
T Consensus 4 ~ere~~i~~LreeLR~EEaKLvLLKKlrq 32 (43)
T 2l2l_A 4 EERERMIKQLKEELRLEEAKLVLLKKLRQ 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999888888877776653
No 93
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.05 E-value=3e+02 Score=23.96 Aligned_cols=65 Identities=26% Similarity=0.222 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 222 LSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 222 l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
++..|.-.-..++.-++.| ..-....|..|+..+...+..++.-+...+.|....++++.-...|
T Consensus 16 ~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333444444433 3455667788888888888888888888888877777666544444
No 94
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=27.74 E-value=2.6e+02 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVS 252 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis 252 (525)
..|+........++++|+..+..|..++.
T Consensus 41 ~~L~~i~~~K~~ll~~L~~~~~~R~~~l~ 69 (154)
T 3opc_A 41 ESLQAAVQRKETLADDLAQLGAERDALLS 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666667666666666654
No 95
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=27.65 E-value=4.5e+02 Score=29.02 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 244 EASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 244 ~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
...|+..+..|..|...|++....+..-.+=|..+.+.+..++++-.
T Consensus 652 ~~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L~~~~~~~~~~~~ 698 (704)
T 2xs1_A 652 ANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCS 698 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777777777777666666555555444444445555554443
No 96
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=27.59 E-value=35 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHhhhhhhhhhcCCCCc-chhHHHHHH
Q 009811 197 VHRVKKMEKDVDIACTNAKDP-KRKTLSKEL 226 (525)
Q Consensus 197 v~~~~~~eK~vd~acs~~~d~-r~~~l~keL 226 (525)
.++++.+|+++..||+.+ |. ..+.|-..|
T Consensus 7 ~d~I~aiEQqiyvA~seG-d~etv~~Le~QL 36 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKG-DVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHHHHHHTTS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 367899999999999998 43 234443333
No 97
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.29 E-value=1.4e+02 Score=24.13 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 231 NMLKQCIEKLKSVEASRVALVSQLKEALHEQ 261 (525)
Q Consensus 231 ~~lke~IeqLe~~~~aR~~Lis~LkeAL~~q 261 (525)
+...+.|+.|++....+..+|..|+.-|..+
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666667777777776655544
No 98
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=27.18 E-value=2.2e+02 Score=26.00 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe 241 (525)
...+.++.+.....|..+++.|+
T Consensus 90 ~~~l~~~~e~Lr~~L~~d~EelR 112 (165)
T 1gs9_A 90 RARLSKELQAAQARLGADMEDVR 112 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888887777664
No 99
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.17 E-value=3e+02 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 251 VSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 251 is~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
++.=.+|..-||.....+++....++.--+++.....||++.
T Consensus 54 l~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 54 LGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 333345555666666666666666666677777777777665
No 100
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.92 E-value=3e+02 Score=23.59 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHhh
Q 009811 169 AEKIVSAYHLVLC 181 (525)
Q Consensus 169 ~ekivsa~q~l~~ 181 (525)
-+..+..++..++
T Consensus 18 ye~~I~~LR~qid 30 (119)
T 3ol1_A 18 YEEEMRELRRQVD 30 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554443
No 101
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.84 E-value=5.7e+02 Score=26.77 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 224 keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
+.+++....+++-.+.++.......+-++.+++.++..+.+.+.++...
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHH
Confidence 3444444444444444443333333333333444443334444444333
No 102
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=26.19 E-value=3e+02 Score=25.99 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 009811 224 KELEEEENMLKQCIE 238 (525)
Q Consensus 224 keLee~e~~lke~Ie 238 (525)
+|+++++..+.++.+
T Consensus 165 eEl~~A~~~fe~~~e 179 (240)
T 2z0v_A 165 EEVRQAVEKFEESKE 179 (240)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.09 E-value=4.7e+02 Score=26.83 Aligned_cols=62 Identities=15% Similarity=-0.029 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEA 282 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra 282 (525)
.+.+.+++....+..-.++++...+.....++.|++--+.++..++++..+...|..-...+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 44444444444444444455555555566666666655555555555555555544443333
No 104
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=26.05 E-value=2.6e+02 Score=22.71 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=6.2
Q ss_pred HHhhhhhhhhh
Q 009811 201 KKMEKDVDIAC 211 (525)
Q Consensus 201 ~~~eK~vd~ac 211 (525)
.++||++|.+.
T Consensus 5 ~EIEk~ID~aI 15 (79)
T 2fzt_A 5 DEIERKIDEAI 15 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45566666544
No 105
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=26.02 E-value=5.4e+02 Score=26.23 Aligned_cols=29 Identities=3% Similarity=-0.021 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHhhhccccchhh-HHHHH
Q 009811 99 DSGKNVVSRLVNIWDERRVFGSRA-RGVKD 127 (525)
Q Consensus 99 ~~~kkkV~Rll~IWeeR~VF~~~i-~~Lke 127 (525)
..+.+-+.+|.+.+++|.-...+. ..|..
T Consensus 22 ~~g~~lledl~~F~reRA~IE~eYAk~L~k 51 (406)
T 4dyl_A 22 EAELRLLEGMRKWMAQRVKSDREYAGLLHH 51 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777899999999999988884 56654
No 106
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=25.83 E-value=1.9e+02 Score=25.10 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIEKLKSVEASRVALVSQL 254 (525)
Q Consensus 225 eLee~e~~lke~IeqLe~~~~aR~~Lis~L 254 (525)
.|+........++++|+..+..|..++..+
T Consensus 40 ~L~~i~~~k~~ll~~L~~~~~~R~~~l~~l 69 (157)
T 2fup_A 40 VLQQLLGAKQPLMQQLERNGRARAEILREA 69 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555556666667777777777777766544
No 107
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=25.50 E-value=2.9e+02 Score=22.94 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 258 LHEQESELENVRTQMQVAQAQAEEA 282 (525)
Q Consensus 258 L~~qE~~lE~vr~~~q~aq~~~~ra 282 (525)
+.+....+.-+.+++..++.+.+++
T Consensus 69 l~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 69 QLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444555554444444443
No 108
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.49 E-value=1.9e+02 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009811 220 KTLSKELEEEENMLKQCIEKLKS 242 (525)
Q Consensus 220 ~~l~keLee~e~~lke~IeqLe~ 242 (525)
+.++.+||+..+-+..-+..|+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 45777787777777777777763
No 109
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=25.40 E-value=4.2e+02 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009811 262 ESELENVRTQMQVAQAQAEEACNMRKRLN 290 (525)
Q Consensus 262 E~~lE~vr~~~q~aq~~~~ra~~lr~~Ld 290 (525)
+..--..++-++.|+++++.++++-...+
T Consensus 122 d~asvta~~~iq~aqsqV~~~r~~s~~ae 150 (184)
T 1few_A 122 DQASITARNHIQLVKLQVEEVHQLSRKAE 150 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888888888888888877665
No 110
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.36 E-value=1.7e+02 Score=24.57 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSV-E-ASRVALVSQLKEALHEQESELEN 267 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~-~-~aR~~Lis~LkeAL~~qE~~lE~ 267 (525)
.|..+|.....-++.-+.++... . ..|..+|..+++.|++-++.++.
T Consensus 19 ~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~q 67 (102)
T 2qyw_A 19 KLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAE 67 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444221 1 45555566555555555554444
No 111
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=25.25 E-value=49 Score=34.75 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=61.1
Q ss_pred HHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 009811 28 SHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSR 107 (525)
Q Consensus 28 S~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~R 107 (525)
.+++-...+-+..++....++-=.+...|-+.+|+.+.+|+... . -.+|.+++..+|..+..+-....-+...|
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~---~---~~~f~~i~~~lf~~la~ci~S~hfqVAEr 312 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI---E---PSEFVKIMEPLFRQLAKCVSSPHFQVAER 312 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC---C---HHHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhC---C---HHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 34444445555666665555555677788899999999999531 1 34678888889988887666667788999
Q ss_pred HHHHhhhccccc
Q 009811 108 LVNIWDERRVFG 119 (525)
Q Consensus 108 ll~IWeeR~VF~ 119 (525)
-+.+|....+..
T Consensus 313 AL~~wnNe~i~~ 324 (403)
T 3fga_B 313 ALYYWNNEYIMS 324 (403)
T ss_dssp HHGGGGCHHHHH
T ss_pred HHHHhccHHHHH
Confidence 999998765543
No 112
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=25.24 E-value=4.4e+02 Score=24.98 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 009811 225 ELEEEENMLKQCIE 238 (525)
Q Consensus 225 eLee~e~~lke~Ie 238 (525)
|++.++.....+.+
T Consensus 182 Ele~A~~~fe~~~e 195 (256)
T 1zww_A 182 ELRQALEKFDESKE 195 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444433333333
No 113
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.22 E-value=1.2e+02 Score=24.04 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 221 TLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELE 266 (525)
Q Consensus 221 ~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE 266 (525)
...+++.+.-....+.|..|+.....+...|..|+.-|..+...+.
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555566666667777777777777888888888877776655543
No 114
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=25.11 E-value=2.4e+02 Score=31.20 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=27.7
Q ss_pred HHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 009811 200 VKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRV-ALVSQLKEAL 258 (525)
Q Consensus 200 ~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~-~Lis~LkeAL 258 (525)
+..++++|+..|. ..-.+-++..+..+++|++.+++....|. ..|+.++.+|
T Consensus 594 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 646 (695)
T 2j69_A 594 VKTAKKELVKHLP-------QVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSEL 646 (695)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777876662 12233445556777777777775544332 3344443333
No 115
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.01 E-value=3.5e+02 Score=23.70 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 258 LHEQESELENVRTQMQVAQAQAEEACN 284 (525)
Q Consensus 258 L~~qE~~lE~vr~~~q~aq~~~~ra~~ 284 (525)
+++.+.+.+.+...++++.+.++|++.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666666666666665553
No 116
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=24.86 E-value=3.1e+02 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009811 246 SRVALVSQLKEALHEQES 263 (525)
Q Consensus 246 aR~~Lis~LkeAL~~qE~ 263 (525)
++...|+.|++-....+.
T Consensus 20 ~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 20 AKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 455555555555555553
No 117
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=24.76 E-value=2.6e+02 Score=23.05 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 233 LKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQM 272 (525)
Q Consensus 233 lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~ 272 (525)
|.+.+++|..++.-|+.-....+.+..+.+.+++.++.++
T Consensus 29 Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l 68 (86)
T 3nr7_A 29 LEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444544444555444444444444444444444433
No 118
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=24.63 E-value=4.2e+02 Score=24.52 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=15.7
Q ss_pred chhhhHHHHHHHhhhcccHHHHHHhhhhHHH
Q 009811 168 AAEKIVSAYHLVLCEQLSEEEEMARCKSVVH 198 (525)
Q Consensus 168 ~~ekivsa~q~l~~~~~~e~~~l~k~ksav~ 198 (525)
-+|++|++=...+. -|...|.+|....+
T Consensus 20 ~aek~~~~k~~~le---~ek~~l~~~e~~r~ 47 (169)
T 3k29_A 20 RAEKVVKEKRRLLE---LEQEKLRERESERD 47 (169)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 46788877665444 23344555555443
No 119
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.63 E-value=3.3e+02 Score=23.97 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=37.9
Q ss_pred HHHHhhhhHHHHHH-Hhhhhhhhhhc-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 188 EEMARCKSVVHRVK-KMEKDVDIACT-NAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESEL 265 (525)
Q Consensus 188 ~~l~k~ksav~~~~-~~eK~vd~acs-~~~d~r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~l 265 (525)
..+.|..+-++.|+ +||.++-.+.. ++....=-.|+++| +++-..+..|..+.+....+|++..
T Consensus 12 ~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~L--------------saIk~ry~~L~~q~~~iaaeQke~~ 77 (123)
T 4aj5_K 12 LMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKEL--------------SVIKSRYQTLYARFKPVAVEQKESK 77 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776 78877765322 11000113555555 2233344455566666666666655
Q ss_pred HHHHHHHH
Q 009811 266 ENVRTQMQ 273 (525)
Q Consensus 266 E~vr~~~q 273 (525)
+.+++.++
T Consensus 78 d~ir~tL~ 85 (123)
T 4aj5_K 78 SRICATVK 85 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.53 E-value=3.1e+02 Score=28.22 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 262 ESELENVRTQMQVAQAQAEEACN 284 (525)
Q Consensus 262 E~~lE~vr~~~q~aq~~~~ra~~ 284 (525)
+.+.+..+..+...+...++..+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHH
Confidence 33333333444444444443333
No 121
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=24.44 E-value=1.8e+02 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=11.1
Q ss_pred ccHHHHHHhhhhHHHHHHHhhhhh
Q 009811 184 LSEEEEMARCKSVVHRVKKMEKDV 207 (525)
Q Consensus 184 ~~e~~~l~k~ksav~~~~~~eK~v 207 (525)
.+|+.+|..-..-+.+.+++...+
T Consensus 31 ~gE~eeLe~e~~rL~nae~l~~~~ 54 (175)
T 4abx_A 31 PGEEEGLNTELSRLSNLHTIAQAA 54 (175)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCHHHHHHHH
Confidence 455555554444444444433333
No 122
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.40 E-value=5.1e+02 Score=25.34 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009811 223 SKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 223 ~keLee~e~~lke~IeqLe 241 (525)
..+.++....|.-+.+.|+
T Consensus 87 ~~~~eeLr~~L~p~~eelr 105 (273)
T 3s84_A 87 RENADSLQASLRPHADELK 105 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3344444555544444443
No 123
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.35 E-value=4.1e+02 Score=24.22 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQL-----------KEALHEQESELENVRTQMQVAQAQAE 280 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~L-----------keAL~~qE~~lE~vr~~~q~aq~~~~ 280 (525)
...|..+|.+....+.+.-..++++..--+.|-..| +..-+..|.+.+.++.++.+.++..+
T Consensus 60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 60 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444444333333333 22222334444444555555544444
No 124
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.25 E-value=3.1e+02 Score=22.77 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
...+..++++...++.+-|+.+- .|-+=+ +...+....+...++.|...++.|++++
T Consensus 32 l~~vq~eldeVk~IM~~NI~kvL----eRGEkL----------d~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 32 LQQTQAQVDEVVDIMRVNVDKVL----ERDQKL----------SELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777776666442 222222 2233334445566788888999888876
No 125
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=24.17 E-value=57 Score=34.70 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=59.9
Q ss_pred HHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 009811 29 HWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRL 108 (525)
Q Consensus 29 ~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~~vLp~a~~~v~~~~d~~~kkkV~Rl 108 (525)
++|-...+-+..++....++-=.+...|-+.+|..+.+|+... . -.+|.+++..+|..+..+-+...-+...|.
T Consensus 273 qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~---~---~~ef~~i~~~lF~~la~ci~S~hfqVAErA 346 (449)
T 2npp_B 273 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI---E---PSEFVKIMEPLFRQLAKCVSSPHFQVAERA 346 (449)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC---C---HHHHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC---C---HHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4444444555555555555544567777799999999998531 1 245788888899888876666777889999
Q ss_pred HHHhhhcccc
Q 009811 109 VNIWDERRVF 118 (525)
Q Consensus 109 l~IWeeR~VF 118 (525)
+.+|....+.
T Consensus 347 L~~w~N~~i~ 356 (449)
T 2npp_B 347 LYYWNNEYIM 356 (449)
T ss_dssp HGGGGCHHHH
T ss_pred HHHHCCHHHH
Confidence 9999988765
No 126
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.16 E-value=3.7e+02 Score=23.68 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q 009811 276 QAQAEEACNMRKRL 289 (525)
Q Consensus 276 q~~~~ra~~lr~~L 289 (525)
++-.+..++|-+||
T Consensus 81 r~tL~~tm~miQ~L 94 (123)
T 4aj5_K 81 CATVKKTMNMIQKL 94 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445555555
No 127
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=23.59 E-value=3.5e+02 Score=27.87 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHHHHHhhhhhhhhhcCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 197 VHRVKKMEKDVDIACTNAKDP-KRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVA 275 (525)
Q Consensus 197 v~~~~~~eK~vd~acs~~~d~-r~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~a 275 (525)
..+.+++++.+.+- ..-.|+ +...+.+++ +.|+..++.++........| ..|++++. .++..+..+.-+...
T Consensus 9 ~~r~~el~~~~~~p-~~~~d~~~~~~~~ke~----~~l~~~v~~~~~~~~~~~~~-~~~~el~~-D~e~~~~a~~e~~~l 81 (354)
T 3d5a_X 9 EEEYRELEALLSDP-EVLKDKGRYQSLSRRY----AEMGEVIGLIREYRKVLEDL-EQAESLLD-DPELKEMAKAEREAL 81 (354)
T ss_dssp THHHHHHHHHTTST-TTTSCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-chhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CHHHHHHHHHHHHHH
Confidence 34555666555321 011233 245666666 55555555554333222222 22233332 445555666656566
Q ss_pred HHHHHHHHH-HHHhh
Q 009811 276 QAQAEEACN-MRKRL 289 (525)
Q Consensus 276 q~~~~ra~~-lr~~L 289 (525)
+...+.+.. |+.-|
T Consensus 82 ~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 82 LARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666653 55555
No 128
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=23.47 E-value=4.1e+02 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 219 RKTLSKELEEEENMLKQCIEKLKSVEASRVALVS 252 (525)
Q Consensus 219 ~~~l~keLee~e~~lke~IeqLe~~~~aR~~Lis 252 (525)
...++++.++.+..+...-+.++.+......|+.
T Consensus 48 ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~ 81 (218)
T 3fb2_A 48 AEALLERHQEHRTEIDARAGTFQAFEQFGQQLLA 81 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4455555555555555444445555555555543
No 129
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=22.77 E-value=72 Score=27.77 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 250 LVSQLKEALHEQESE---LENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 250 Lis~LkeAL~~qE~~---lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
+...|.+.|.+|... .+....+-.++.....++++||++|
T Consensus 69 vRqaLQdLlseym~~~g~ke~se~L~~aI~km~~kt~dLrRqL 111 (111)
T 4ehp_B 69 VRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQL 111 (111)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 334667777776442 1111222234456677888888875
No 130
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=21.83 E-value=6.4e+02 Score=25.62 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 009811 274 VAQAQAEEACNMRKRLN 290 (525)
Q Consensus 274 ~aq~~~~ra~~lr~~Ld 290 (525)
-++..++...+.+.++|
T Consensus 368 ~~~~~~~~le~~l~~f~ 384 (386)
T 4akv_A 368 FYQRVGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33334444444444443
No 131
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=21.46 E-value=44 Score=30.08 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHH
Q 009811 26 TLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQN 70 (525)
Q Consensus 26 tlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQn 70 (525)
.+..+|..|+ ++|++-|.+.+++-..+. +|.++|-+..
T Consensus 6 ~i~~fI~enk---~el~~~W~~~~k~~~~e~----~~~isd~vye 43 (136)
T 2bnl_A 6 TVYQFIAENQ---NELLQLWTDTLKELSEQE----SYQLTDQVYE 43 (136)
T ss_dssp HHHHHHHHTH---HHHHHHHHHHHHHHHTTS----SCCCCHHHHH
T ss_pred HHHHHHHHhH---HHHHHHHHHHHHHhhhhh----hhhccHHHHH
Confidence 4566777665 599999999998633322 5556665554
No 132
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.25 E-value=2.8e+02 Score=21.25 Aligned_cols=58 Identities=9% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009811 228 EEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRL 289 (525)
Q Consensus 228 e~e~~lke~IeqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~L 289 (525)
.....+++|..-+...+......+. -|..|.++++..+..+.++..-+++...+.+.|
T Consensus 6 ~t~~~l~~s~ri~~ETE~iG~~~l~----~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m 63 (65)
T 1gl2_C 6 RATQSIERSHRIATETDQIGTEIIE----ELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence 3344455555544444444443333 466788888888888888888888888776655
No 133
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=21.11 E-value=1.7e+02 Score=28.76 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=42.2
Q ss_pred cchhhhhHHHHHHhhhcChhhHH-HHHHHHHHHHHHHhhcCCc--chhhHHHHHHHHhhhccccchh-h-HHHHHHh
Q 009811 58 VPLLYLANDILQNSKRKGNEFVT-EFWKVLPAALKDVVENGDD--SGKNVVSRLVNIWDERRVFGSR-A-RGVKDVM 129 (525)
Q Consensus 58 L~lLYLaNDVlQnSkrKg~eF~~-aF~~vLp~a~~~v~~~~d~--~~kkkV~Rll~IWeeR~VF~~~-i-~~Lke~l 129 (525)
+..|=+++.++..-.+.+..|.+ +-..+||.++..+ ||. .+|+.++.|+..-. .||+.. + ..+.+.+
T Consensus 105 ~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKl---Gd~k~~vR~~~r~il~~l~--~v~~~~~v~~~l~~g~ 176 (266)
T 2of3_A 105 IKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKT---GEAKDNMRTSVRDIVNVLS--DVVGPLKMTPMLLDAL 176 (266)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGG---GCSSHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHH
Confidence 45577778887776666544432 2344666665543 554 47899999887664 478776 3 5555544
No 134
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=20.66 E-value=4.3e+02 Score=26.95 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009811 248 VALVSQLKEALHEQESELENVRT 270 (525)
Q Consensus 248 ~~Lis~LkeAL~~qE~~lE~vr~ 270 (525)
..++..+++.|++-++....++.
T Consensus 378 ~~~~~~~~~~~~~~~~~i~~~~~ 400 (463)
T 2xz3_A 378 TSLIHVLEQDQQRLITAINQTHY 400 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555444444444333
No 135
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.58 E-value=1.5e+02 Score=21.85 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=28.5
Q ss_pred HHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009811 198 HRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKS 242 (525)
Q Consensus 198 ~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~ 242 (525)
+.++++|-.+|.-- -+...|+.||+..+..+++-|.+||.
T Consensus 5 ekv~~Le~~ld~Lq-----Tr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 5 EKVEQLGSSLDTLQ-----TRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666421 23678889999999999999888874
No 136
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=20.38 E-value=4.4e+02 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 009811 267 NVRTQMQVAQAQAEEACNMRKRLNDE 292 (525)
Q Consensus 267 ~vr~~~q~aq~~~~ra~~lr~~Ld~~ 292 (525)
.+..-+.+.+.+++|+..+.++++..
T Consensus 50 ~l~~H~~eT~~qi~rLe~i~~~lg~~ 75 (173)
T 2gyq_A 50 GLTSHLEETQKQIERLDQVFKKLGQK 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444567788899999999999864
No 137
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=20.19 E-value=5.7e+02 Score=26.35 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=18.9
Q ss_pred HHHHHHhhhhhhhhhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHH
Q 009811 197 VHRVKKMEKDVDIACTNAKDPK-RKTLSKELEEEENMLKQCIEKLK 241 (525)
Q Consensus 197 v~~~~~~eK~vd~acs~~~d~r-~~~l~keLee~e~~lke~IeqLe 241 (525)
..+.+++++.+.+- ..-.|+. ...+.+|+ +.|+..++.++
T Consensus 31 ~~r~~el~~~~~~p-~~w~d~~~~~~~~ke~----~~l~~~v~~~~ 71 (365)
T 1gqe_A 31 KERLEEVNAELEQP-DVWNEPERAQALGKER----SSLEAVVDTLD 71 (365)
T ss_dssp HHHHHHHHHHHHSG-GGGGSHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-ccccCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34556666655421 1112332 45666666 44555555444
No 138
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.19 E-value=2.2e+02 Score=22.97 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=28.9
Q ss_pred HHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009811 198 HRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSV 243 (525)
Q Consensus 198 ~~~~~~eK~vd~acs~~~d~r~~~l~keLee~e~~lke~IeqLe~~ 243 (525)
+.+++|+-.+|..- -+...|+.||+..+..+++-|.+||..
T Consensus 7 EKv~~LE~sld~LQ-----TrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 7 EKVTRMESSVDLLQ-----TRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666421 236788889999999999888888753
Done!