Query 009812
Match_columns 524
No_of_seqs 299 out of 1528
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 17:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2224 Uncharacterized conser 100.0 1.7E-46 3.6E-51 381.9 16.5 312 73-522 402-734 (781)
2 KOG2197 Ypt/Rab-specific GTPas 100.0 7.9E-44 1.7E-48 383.3 19.5 429 31-523 3-447 (488)
3 KOG1092 Ypt/Rab-specific GTPas 100.0 1.3E-38 2.7E-43 325.5 20.0 265 96-520 178-476 (484)
4 KOG4567 GTPase-activating prot 100.0 9.4E-38 2E-42 309.0 21.6 197 299-521 121-364 (370)
5 KOG2058 Ypt/Rab GTPase activat 100.0 1.9E-32 4.1E-37 288.0 16.6 176 299-502 197-384 (436)
6 smart00164 TBC Domain in Tre-2 100.0 1.4E-31 3E-36 256.9 13.7 138 300-442 48-197 (199)
7 COG5210 GTPase-activating prot 100.0 6.5E-30 1.4E-34 278.7 18.2 159 300-485 258-428 (496)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 1.8E-27 3.8E-32 229.6 18.9 157 300-484 48-214 (214)
9 KOG2223 Uncharacterized conser 99.9 2.2E-26 4.7E-31 235.9 18.0 182 301-512 358-550 (586)
10 KOG2222 Uncharacterized conser 99.9 1.1E-23 2.3E-28 217.7 15.2 187 300-515 213-416 (848)
11 KOG1091 Ypt/Rab-specific GTPas 99.9 6.6E-22 1.4E-26 209.1 19.2 195 298-517 104-362 (625)
12 KOG4347 GTPase-activating prot 99.9 6.8E-22 1.5E-26 212.2 10.7 166 302-497 247-421 (671)
13 KOG1093 Predicted protein kina 99.8 6.6E-21 1.4E-25 201.6 14.2 191 300-519 392-592 (725)
14 KOG4436 Predicted GTPase activ 99.8 8E-20 1.7E-24 199.0 19.2 179 294-501 617-807 (948)
15 KOG2595 Predicted GTPase activ 99.7 1.1E-16 2.4E-21 161.1 19.1 160 332-520 142-303 (395)
16 KOG1102 Rab6 GTPase activator 99.6 2.6E-16 5.5E-21 167.1 8.0 170 301-501 188-368 (397)
17 KOG3636 Uncharacterized conser 99.4 3.7E-13 8E-18 139.5 8.2 158 327-513 104-267 (669)
18 KOG2221 PDZ-domain interacting 99.3 2.3E-13 4.9E-18 130.2 1.9 113 300-418 144-267 (267)
19 KOG2197 Ypt/Rab-specific GTPas 99.3 4.4E-12 9.5E-17 137.7 5.5 337 76-524 148-488 (488)
20 KOG1648 Uncharacterized conser 99.2 1.4E-12 3.1E-17 136.4 -0.7 282 71-522 526-807 (813)
21 KOG4436 Predicted GTPase activ 98.9 8.7E-09 1.9E-13 113.8 11.2 170 301-499 230-419 (948)
22 KOG2224 Uncharacterized conser 98.4 1E-07 2.2E-12 99.2 1.4 75 292-371 486-573 (781)
23 KOG2801 Probable Rab-GAPs [Int 95.1 0.13 2.8E-06 52.2 9.4 159 330-517 127-293 (559)
24 PF14961 BROMI: Broad-minded p 94.4 0.21 4.6E-06 59.3 10.1 115 384-521 1166-1281(1296)
25 PF10500 SR-25: Nuclear RNA-sp 34.0 29 0.00063 34.3 2.3 13 291-303 161-173 (225)
26 PF03556 Cullin_binding: Culli 28.7 66 0.0014 28.6 3.5 55 380-442 3-57 (117)
27 KOG2058 Ypt/Rab GTPase activat 25.3 45 0.00097 36.5 2.1 26 97-122 147-172 (436)
28 KOG4631 NADH:ubiquinone oxidor 23.4 44 0.00096 28.4 1.3 44 74-120 7-51 (100)
29 PF10815 ComZ: ComZ; InterPro 23.0 1.1E+02 0.0024 23.6 3.2 39 388-426 6-44 (56)
No 1
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-46 Score=381.88 Aligned_cols=312 Identities=24% Similarity=0.440 Sum_probs=245.6
Q ss_pred CCCCCHHHHhh-hcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009812 73 KHALLPKQWKT-FFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECR 151 (524)
Q Consensus 73 ~~plt~e~W~~-~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~ 151 (524)
.+.++-..|.. ++++.|.+.+. -+++|.||+|||+.++|++||||||.+|.+.||.|+|++++.+||+||+++.++-.
T Consensus 402 ~kki~~n~~~~t~lne~gqiedd-~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrl 480 (781)
T KOG2224|consen 402 VKKIGTNAFLGTHLNEKGQIEDD-LKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRL 480 (781)
T ss_pred hhhhhHHHHHHhhhhhcccchhH-HHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667775 89999999976 68999999999999999999999999999999999999999999999999986533
Q ss_pred -HHhhhhccccccccccCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCccc
Q 009812 152 -KIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDER 230 (524)
Q Consensus 152 -~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~ 230 (524)
.|.+++.. .|++....+++|||+||||+ +.+|.|+|+|
T Consensus 481 ysmspeeh~-----------------~fwknvq~tvdkdvvrtdrn------------------------n~ff~gddnp 519 (781)
T KOG2224|consen 481 YSMSPEEHI-----------------AFWKNVQFTVDKDVVRTDRN------------------------NPFFCGDDNP 519 (781)
T ss_pred hcCCHHHHH-----------------HHHhheEEEEecceeeccCC------------------------CCcccCCCCC
Confidence 56554442 23333335579999999998 4678888866
Q ss_pred cccccccccCCCCCCCCCCCCCccccccccccccccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhc
Q 009812 231 DKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRAN 310 (524)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~ 310 (524)
.+. .+++++.
T Consensus 520 n~e---------------------------------------------------------------~mk~ill------- 529 (781)
T KOG2224|consen 520 NTE---------------------------------------------------------------SMKNILL------- 529 (781)
T ss_pred cHH---------------------------------------------------------------HHHHHHH-------
Confidence 322 2333332
Q ss_pred CccccCCcchhhhh---HH--------------hhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhhhc
Q 009812 311 SEWTIYSPSQAAVS---EM--------------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHN 373 (524)
Q Consensus 311 p~~~~f~~~~~~~~---~~--------------~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~~~ 373 (524)
++..|++..+|-+ .. .-.-+|..|||+| +++|++.- .++|.|+||||++||.+.-..
T Consensus 530 -n~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsd--lvapilae---vldesdtfwcfvglmqna~fv 603 (781)
T KOG2224|consen 530 -NFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSD--LVAPILAE---VLDESDTFWCFVGLMQNAFFV 603 (781)
T ss_pred -hheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchh--hhhhHHHh---hhccccchhhhhhhhcceEEE
Confidence 2445544221110 00 0012466666663 46665432 258888888888888764333
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCC--CcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhcccc
Q 009812 374 FRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAE--DCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAK 451 (524)
Q Consensus 374 f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~--~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~ 451 (524)
-.+....|..+|..|++||+.+.|.+|+||+.+|-+ .++||.||++++|+||||-..++|||++.|++..
T Consensus 604 ~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y~-------- 675 (781)
T KOG2224|consen 604 CSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYL-------- 675 (781)
T ss_pred eCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhh--------
Confidence 345556788999999999999999999999999865 4799999999999999999999999999999873
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhhh
Q 009812 452 SAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHA 522 (524)
Q Consensus 452 ~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~~~~~~ 522 (524)
++.|++|+|+|||-.+.+.++.+....|+++-.|.+++..+|-+-+|++|+.|.++|+.
T Consensus 676 ------------tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~qfr~ 734 (781)
T KOG2224|consen 676 ------------TDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQFRL 734 (781)
T ss_pred ------------HHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHHHhh
Confidence 56899999999999999999998889999999999999999999999999999999874
No 2
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-44 Score=383.32 Aligned_cols=429 Identities=29% Similarity=0.456 Sum_probs=300.3
Q ss_pred CCCCccccccceeeeecCCCCcccccccCCCCCCCCCchhhcCCCCCHHHHhhhcCCCCcccchhHHHHHHHhcCCCCcc
Q 009812 31 PSSSSWIHLRSVLLVVASSSSSSSPVYSDRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPS 110 (524)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~plt~e~W~~~fd~dGrl~~~~~~l~k~V~~gGi~p~ 110 (524)
+.+.+|+|++++++...+++++..-....+...+.+|..+++..+++.+.|++.|+++|++.+ +.++++.|..|||+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~-~~~~l~~i~~~gi~ps 81 (488)
T KOG2197|consen 3 SESKQWDSLKSLLLSLDSSSFTVVDSREPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSG-FVKLLKLIILGGIDPS 81 (488)
T ss_pred ccchhhhhcccceEEEeeccCccccccccccccCCcceeeccccccchhhhhhccCCCccccc-hhhhheeeecCCCCCc
Confidence 446789999999988877766444444456667779999999999999999999999999987 4789999999999999
Q ss_pred hHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------cccccccCCCCCCCCCCCccccCC
Q 009812 111 IRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKS------SKLKETTGKSSNEDSGDLSQVFDS 184 (524)
Q Consensus 111 lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~~l~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~ 184 (524)
+|+|||+||||+|+.++|.+||.+++..++.+|..|..+|+.+.+.+.+. ....+.+.++...+.+........
T Consensus 82 ir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~ 161 (488)
T KOG2197|consen 82 IRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQMMKSTVGNGLSYVVSSVVSDNRSPSLTLEEYNSNAMREG 161 (488)
T ss_pred ccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcchhhhhhccccceeeeEEeecCCCCcchhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999998866532 011111111100000111100000
Q ss_pred CCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCccccccccccccCCCCCCCCCCCCCcccccccccccc
Q 009812 185 PGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSV 264 (524)
Q Consensus 185 ~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (524)
.+..++.. +..+.. ..-|+ -..+...+ ...+. .......++...... ..
T Consensus 162 ~~~~~~~~--~~~~~~----------------~~~~~-~l~~~~~~----------~~~~~-~~~~~~~~~~~~~~~-~~ 210 (488)
T KOG2197|consen 162 RLDESVHQ--RERIFS----------------GGLSK-SLRAEVWK----------FLLDY-SPWDSTTRERVSLRK-LT 210 (488)
T ss_pred ccccchhh--hheecc----------------ccccc-chhhhhhh----------hhhcc-cCccccccccccccc-cc
Confidence 01111100 000000 00011 00000000 00000 000000000000000 00
Q ss_pred ccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhcCccccCCcchh-hhhHHh---------hhhhhhh
Q 009812 265 EGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQA-AVSEMK---------AQRSAQI 334 (524)
Q Consensus 265 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~p~~~~f~~~~~-~~~~~~---------~~~igY~ 334 (524)
.+-.... ..............+.+..+...|.+||.||.+.+.+|..... .+.... ...+|||
T Consensus 211 ~~~~~~k-------~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~ 283 (488)
T KOG2197|consen 211 DEYFRLK-------LQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYC 283 (488)
T ss_pred ccHhhhh-------hhheeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccc
Confidence 0000000 0000000011111112446667899999999999999974211 111111 1279999
Q ss_pred cccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchh
Q 009812 335 VGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFV 414 (524)
Q Consensus 335 QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~ 414 (524)
|||+| +++|+++. +.+|.+|||||++||+++++||..++.||+.++..+..+++..||.||+||++++.+.++||
T Consensus 284 QgmSD--llspi~~v---~~de~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~ 358 (488)
T KOG2197|consen 284 QGMSD--LLSPILIV---MEDEVEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFC 358 (488)
T ss_pred cCchh--hcCcceee---ecCchHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCcccee
Confidence 99995 69997543 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 009812 415 YRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIM 494 (524)
Q Consensus 415 ~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil 494 (524)
|||+++.|+|||.++++++||+++|+... ..+|++|++.++|-...+.|+.+..++++++
T Consensus 359 fr~l~v~frrEf~~ed~l~LWEvlw~~~~--------------------~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l 418 (488)
T KOG2197|consen 359 FRMLLVPFRREFEFEDSLRLWEVLWTDLP--------------------SPHFHLYVAPAILNKDPQTLMEQGKSFNEVL 418 (488)
T ss_pred eehhhcccccccccccHHHHHHHHHhcCc--------------------cchHHHHHHHhhhhcchHHHHhcCccchhHH
Confidence 99999999999999999999999999874 2389999999999998899999888999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHhhhc
Q 009812 495 RECNSMAGHLDVWKLLDDAHDLVVTLHAK 523 (524)
Q Consensus 495 ~~ln~l~~~iDv~~lL~~A~~L~~~~~~~ 523 (524)
++++.+....|+..++..|..+..+.+..
T Consensus 419 ~~i~~~~~~~d~~~~~~~A~~~~~~~k~~ 447 (488)
T KOG2197|consen 419 KHVNLLSEKADVLWVLVRAEALERQNKQM 447 (488)
T ss_pred hhcccccccchhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998776643
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-38 Score=325.46 Aligned_cols=265 Identities=23% Similarity=0.401 Sum_probs=215.5
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCC
Q 009812 96 VKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDS 175 (524)
Q Consensus 96 ~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~~l~~~~~~~~~~~~~~~~s~~~~~ 175 (524)
.++++++.++||+...|+.||++|+||.|.++ +-|+...+.|+++|.+++.++......
T Consensus 178 ~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~--~rr~~~l~~Kr~eY~~~v~~~~~~~~~------------------- 236 (484)
T KOG1092|consen 178 LEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNS--DRREGTLQRKRKEYVDSVVQYFDSLTN------------------- 236 (484)
T ss_pred HHHHHHHccCCCCccccCccceeeecccCcch--hhhhhhHHHHHHHHHHHHHHHhccCCC-------------------
Confidence 47889999999999999999999999999985 578899999999999999886431110
Q ss_pred CCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCccccccccccccCCCCCCCCCCCCCccc
Q 009812 176 GDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSED 255 (524)
Q Consensus 176 ~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (524)
|+
T Consensus 237 --------------------------------------------------~~---------------------------- 238 (484)
T KOG1092|consen 237 --------------------------------------------------GD---------------------------- 238 (484)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred cccccccccccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhcCccccCCcchhhhh-----HHhh--
Q 009812 256 LENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVS-----EMKA-- 328 (524)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~p~~~~f~~~~~~~~-----~~~~-- 328 (524)
+++.+ .|||..|++||+|...+|....-... ..++
T Consensus 239 -------------------------------------~~~d~-~rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwair 280 (484)
T KOG1092|consen 239 -------------------------------------EDQDT-WRQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIR 280 (484)
T ss_pred -------------------------------------ccCcc-ccccccCCCCCCccccchhhHHHHHHHHHHHHHHHHh
Confidence 00111 14567777777777777753221111 1222
Q ss_pred -hhhhhhcccChhhhhhhhhHHhh-----c-c----------------cchhHHHHHHHHHHHhhhhcCCCChHHHHHHH
Q 009812 329 -QRSAQIVGLKDYDHLEPSRIYHA-----A-R----------------LEDHEAFWCFAGFMKKARHNFRLDEVGIRRQL 385 (524)
Q Consensus 329 -~~igY~QGM~~y~llaP~l~Y~~-----~-~----------------l~E~dAFwcF~~Lm~~~~~~f~~~~~gi~~~l 385 (524)
.-.||+||.|+ ++.|+++... . + .-|+|||||+..|++.+++||+..++||+++.
T Consensus 281 hpAsGyvqgind--lvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV 358 (484)
T KOG1092|consen 281 HPASGYVQGIND--LVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKV 358 (484)
T ss_pred ccccccccccee--eechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHH
Confidence 35799999996 4888765321 1 0 16999999999999999999999999999999
Q ss_pred HHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCC
Q 009812 386 SIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTD 465 (524)
Q Consensus 386 ~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~ 465 (524)
..|+.|++.+|+.|++||+++|++-..|+|||+.|||.||||+..++||||.+++++. +..
T Consensus 359 ~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~d-------------------gf~ 419 (484)
T KOG1092|consen 359 KNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPD-------------------GFN 419 (484)
T ss_pred HHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCcc-------------------chH
Confidence 9999999999999999999999999999999999999999999999999999999965 235
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCC----CCCHHHHHHHHHHHHHHh
Q 009812 466 DLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAG----HLDVWKLLDDAHDLVVTL 520 (524)
Q Consensus 466 ~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~----~iDv~~lL~~A~~L~~~~ 520 (524)
.|++|||||.|++.+++|++ +||.++|-+|++++. .-+++-||..|..+-.-|
T Consensus 420 ~FhvYvcAAFL~kW~~eL~e--~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f 476 (484)
T KOG1092|consen 420 EFHVYVCAAFLLKWSSELME--NDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVF 476 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997 899999999999994 357888998887665444
No 4
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=9.4e-38 Score=308.97 Aligned_cols=197 Identities=24% Similarity=0.428 Sum_probs=169.7
Q ss_pred HHHHHHhhhhhcCccccCCcchhhhh---------------------------HHh--------hhhhhhhcccChhhhh
Q 009812 299 QRIIRLDAVRANSEWTIYSPSQAAVS---------------------------EMK--------AQRSAQIVGLKDYDHL 343 (524)
Q Consensus 299 ~~~I~~Dv~RT~p~~~~f~~~~~~~~---------------------------~~~--------~~~igY~QGM~~y~ll 343 (524)
.-||++||.||+|+-.+|+....+.. ..+ ...|||||||| .++
T Consensus 121 l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMN--EIl 198 (370)
T KOG4567|consen 121 LLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMN--EIL 198 (370)
T ss_pred HHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhH--HHh
Confidence 45799999999999998864221110 001 13799999999 689
Q ss_pred hhhhHHhhcc--------cchhHHHHHHHHHHHhhhhcCCCC----hHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCc
Q 009812 344 EPSRIYHAAR--------LEDHEAFWCFAGFMKKARHNFRLD----EVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDC 411 (524)
Q Consensus 344 aP~l~Y~~~~--------l~E~dAFwcF~~Lm~~~~~~f~~~----~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~ 411 (524)
+|+. |+.+. ..|+|||+||+.||..++++|..+ ..||+..+..|..+|+.+|-+||+||+..++.|.
T Consensus 199 aPiY-YVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~Pq 277 (370)
T KOG4567|consen 199 APIY-YVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQ 277 (370)
T ss_pred hhhh-eeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Confidence 9974 55332 279999999999999999999643 4689999999999999999999999999999999
Q ss_pred chhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHH
Q 009812 412 FFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMD 491 (524)
Q Consensus 412 ~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~d 491 (524)
+|+|||+.+|++.|||+++|+||||.+|++.. ...+++++|+|+|+..|+.||+ .||+
T Consensus 278 fyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~--------------------rfd~Ll~iCcsmlil~Re~il~--~DF~ 335 (370)
T KOG4567|consen 278 FYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ--------------------RFDFLLYICCSMLILVRERILE--GDFT 335 (370)
T ss_pred chhHHHHHHHHhccCCchhHHHHHHHHhcChh--------------------hhHHHHHHHHHHHHHHHHHHHh--cchH
Confidence 99999999999999999999999999999973 3589999999999999999999 7999
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHhh
Q 009812 492 EIMRECNSMAGHLDVWKLLDDAHDLVVTLH 521 (524)
Q Consensus 492 eil~~ln~l~~~iDv~~lL~~A~~L~~~~~ 521 (524)
..++.|++.+ ..|+.+++..|..|-.+=|
T Consensus 336 ~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 336 VNMKLLQNYP-TTDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHHhccc
Confidence 9999999998 8999999999988875543
No 5
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=287.96 Aligned_cols=176 Identities=15% Similarity=0.261 Sum_probs=146.5
Q ss_pred HHHHHHhhhhhcCcc-ccCCcchhh-hhHH---------hhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHH
Q 009812 299 QRIIRLDAVRANSEW-TIYSPSQAA-VSEM---------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFM 367 (524)
Q Consensus 299 ~~~I~~Dv~RT~p~~-~~f~~~~~~-~~~~---------~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm 367 (524)
.++|+.|+.||||++ +.|...... ...+ +...||||||||. +++++|.++ -.|++|||||++++
T Consensus 197 ~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNf--lAallLL~~---~~EE~AFW~Lv~ii 271 (436)
T KOG2058|consen 197 VKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNF--LAALLLLLM---PSEEDAFWMLVALI 271 (436)
T ss_pred HHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHH--HHHHHHHhc---CChHHHHHHHHHHH
Confidence 357999999999999 688654332 2222 2247999999996 466665553 14999999999999
Q ss_pred Hhh-hhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhh
Q 009812 368 KKA-RHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIR 446 (524)
Q Consensus 368 ~~~-~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~ 446 (524)
+++ ..+|.+++.|.+.++.+|+.+++..+|+|+.||+.++++..+|++.||||+|+..+|.+.++||||++|++|.
T Consensus 272 e~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGs--- 348 (436)
T KOG2058|consen 272 ENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGS--- 348 (436)
T ss_pred HHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhccc---
Confidence 994 4588999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred hccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCC
Q 009812 447 AGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAG 502 (524)
Q Consensus 447 ~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~ 502 (524)
.+++-+++|++...+++|+. +.+..++++++..+..
T Consensus 349 -------------------kvlfr~Alai~k~~ee~il~-~~~~~~i~~~~~~~~~ 384 (436)
T KOG2058|consen 349 -------------------KVLFRVALAILKKHEEEILK-EDSSKEILRVLPDLTK 384 (436)
T ss_pred -------------------HHHHHHHHHHHHHhHHHHhc-CCCHHHHHHHHHHHHH
Confidence 44444777777778888887 5788899999876653
No 6
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.97 E-value=1.4e-31 Score=256.89 Aligned_cols=138 Identities=25% Similarity=0.472 Sum_probs=114.1
Q ss_pred HHHHHhhhhhcCccccCCcch--hhhhHH--------hhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh
Q 009812 300 RIIRLDAVRANSEWTIYSPSQ--AAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 369 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~--~~~~~~--------~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~ 369 (524)
++|.+||.||+|++.+|.... ...... ...++||||||++ ++++++.++ .+|++|||||+++|++
T Consensus 48 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~--i~~~ll~~~---~~e~~af~~~~~l~~~ 122 (199)
T smart00164 48 HQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNF--LAAPLLLVM---PDEEDAFWCLVKLMER 122 (199)
T ss_pred HHHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHH--HHHHHHHhc---CCHHHHHHHHHHHHHH
Confidence 357777788877777775311 111111 1237899999995 688887653 2699999999999998
Q ss_pred hhhc-CCCChHHHHHHHHHHHHHHHhhCHHHHHHHHh-cCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhch
Q 009812 370 ARHN-FRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQ-LQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQ 442 (524)
Q Consensus 370 ~~~~-f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~-~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g 442 (524)
+... |..++.|+...+..++.+|+..+|+||+||++ +|+++.+|+++||+++|+++||++.++||||.+|++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 123 YGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred hCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 6655 66777899999999999999999999999996 9999999999999999999999999999999999997
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=6.5e-30 Score=278.71 Aligned_cols=159 Identities=19% Similarity=0.389 Sum_probs=137.1
Q ss_pred HHHHHhhhhhcCccccCCcchhhhh--HHh--------hhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHH-
Q 009812 300 RIIRLDAVRANSEWTIYSPSQAAVS--EMK--------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMK- 368 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~~~~~--~~~--------~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~- 368 (524)
++|.+||.||||++..|+....... ..+ ...+||||||++ +++|++.||. .|++|||||++||+
T Consensus 258 ~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~--l~a~ll~~~~---~Ee~AF~~l~~L~~~ 332 (496)
T COG5210 258 SQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNF--LAAPLLLVLE---SEEQAFWCLVKLLKN 332 (496)
T ss_pred HHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHH--HHHHHHHHhh---hhHHHHHHHHHHHHh
Confidence 5689999999999999965332222 222 237999999995 7999998862 49999999999999
Q ss_pred -hhhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhh
Q 009812 369 -KARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 447 (524)
Q Consensus 369 -~~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~ 447 (524)
.+..+|..++.|+..++.++..+++..+|+||+||+..|+...+|+++||+++|.++||++.++||||++|++|.
T Consensus 333 ~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~---- 408 (496)
T COG5210 333 YGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS---- 408 (496)
T ss_pred ccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc----
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHh
Q 009812 448 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIE 485 (524)
Q Consensus 448 g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~ 485 (524)
.+++.+.+|++...+..++.
T Consensus 409 ------------------~~l~~~~~~~l~~~~~~l~~ 428 (496)
T COG5210 409 ------------------SMLFQLALAILKLLRDKLLK 428 (496)
T ss_pred ------------------HHHHHHHHHHHHhhhhhhhc
Confidence 56666677777778888776
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.95 E-value=1.8e-27 Score=229.58 Aligned_cols=157 Identities=25% Similarity=0.450 Sum_probs=126.1
Q ss_pred HHHHHhhhhhcCccccCCcchhhhhHHh--------hhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHH-Hhh
Q 009812 300 RIIRLDAVRANSEWTIYSPSQAAVSEMK--------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFM-KKA 370 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~~~~~~~~--------~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm-~~~ 370 (524)
++|.+||.||+++...+..........+ ..++||+|||+. +++|++.. ..+|++|||||+++| ...
T Consensus 48 ~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~--i~~~ll~~---~~~e~~af~~~~~l~~~~~ 122 (214)
T PF00566_consen 48 EQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMND--IAAPLLLV---FLDEEEAFWCFVQLLNYYL 122 (214)
T ss_dssp HHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHH--HHHHHHHT---CSHHHHHHHHHHHHHTHHG
T ss_pred HHHHHhhhhhcccchhhhhcchHHHHHHHHHHhccccccccccchhhh--hhhhhhhh---cccccchhccccchhcccc
Confidence 4688999999985544443332222221 236999999995 68887632 148999999999999 457
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccc
Q 009812 371 RHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIA 450 (524)
Q Consensus 371 ~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~ 450 (524)
..+|..+..++...+..++.+++.++|+|++||++.|+++..|+++||+++|++++|++.++|||| ++.+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~------- 194 (214)
T PF00566_consen 123 PDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGY------- 194 (214)
T ss_dssp GGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCT-------
T ss_pred cccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCC-------
Confidence 788888889999999999999999999999999999999999999999999999999999999999 666763
Q ss_pred cccccccccCCCCCCcH-HHHHHHHHHHHHHHHHH
Q 009812 451 KSAWGRMRLRAPPTDDL-LLYAIAACVLQRRKLII 484 (524)
Q Consensus 451 ~~~~~~~~~~~~~~~~~-llfv~aAiLl~~r~~IL 484 (524)
.+ ++++++|++...|++||
T Consensus 195 ---------------~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 195 ---------------KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp ---------------THHHHHHHHHHHHHTHHHHH
T ss_pred ---------------CcHHHHHHHHHHHHHHHHhC
Confidence 45 88889998888899886
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=235.89 Aligned_cols=182 Identities=14% Similarity=0.294 Sum_probs=159.3
Q ss_pred HHHHhhhhhcCccccCCcchhhhhHHhh---------hhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh--
Q 009812 301 IIRLDAVRANSEWTIYSPSQAAVSEMKA---------QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK-- 369 (524)
Q Consensus 301 ~I~~Dv~RT~p~~~~f~~~~~~~~~~~~---------~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~-- 369 (524)
+|.+|+.||||++.+|+....+...++. .++||+|||+. ++..|+. .+++.+||.||.+|+++
T Consensus 358 ~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSF---IaAvLll---nmd~~~AFiafANLLdkp~ 431 (586)
T KOG2223|consen 358 LIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSF---IAAVLLL---NMDLADAFIAFANLLDKPC 431 (586)
T ss_pred heeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHH---HHHHHHH---cCCcHHHHHHHHHHhccHH
Confidence 4899999999999999887666443332 38999999995 3444332 24999999999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhcc
Q 009812 370 ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGI 449 (524)
Q Consensus 370 ~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~ 449 (524)
...+|..|...|...+..|+..+++..|+|+.||.++++.|.+|.+.|+.+||+..+|++.++||||+++-+|.
T Consensus 432 q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdge------ 505 (586)
T KOG2223|consen 432 QQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE------ 505 (586)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecch------
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHH
Q 009812 450 AKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDD 512 (524)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~ 512 (524)
.|++..+++||..+.+.|+. +||.++.++|..++..+..+++...
T Consensus 506 ----------------eFlfr~~lgIlklyepkLl~--mDf~~~~qfLtklp~dL~~eelF~~ 550 (586)
T KOG2223|consen 506 ----------------EFLFRTALGILKLYEPKLLV--MDFIHVAQFLTKLPEDLTPEELFMH 550 (586)
T ss_pred ----------------HHHHHHHHHHHHHccchHhh--hhHHHHHHHHHhCcccCCHHHHHHH
Confidence 78888888888889999998 9999999999999998887777543
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=217.65 Aligned_cols=187 Identities=17% Similarity=0.329 Sum_probs=152.3
Q ss_pred HHHHHhhhhhcCccccCCcchh-hhhHHhh---------hhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh
Q 009812 300 RIIRLDAVRANSEWTIYSPSQA-AVSEMKA---------QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 369 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~~-~~~~~~~---------~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~ 369 (524)
.||++|++|+.|++..|....+ .+...+. +++||||||.. +++-+++|| .|+.|||++.++++.
T Consensus 213 ~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gv--iva~lllf~----~ee~afwmmaaiied 286 (848)
T KOG2222|consen 213 KQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGV--IVACLLLFC----EEENAFWMMAAIIED 286 (848)
T ss_pred HHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccH--HHHHHHHHh----cchhHHHHHHHHHHH
Confidence 3689999999999998876332 2222221 37999999996 588888897 899999999999998
Q ss_pred h-hhc-CCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhh
Q 009812 370 A-RHN-FRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 447 (524)
Q Consensus 370 ~-~~~-f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~ 447 (524)
+ ..+ |.....|++.+..+...|++.+.|.|-+.|++++++..+.+..||+|||...|.....+||||.||.+|
T Consensus 287 ilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g----- 361 (848)
T KOG2222|consen 287 ILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEG----- 361 (848)
T ss_pred hcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecC-----
Confidence 4 444 566788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccccCCCCCCcHHHH-HHHHHHHHHHHHHHh---hcCCHHHHHHHHhccCCC-CCHHHHHHHHHH
Q 009812 448 GIAKSAWGRMRLRAPPTDDLLLY-AIAACVLQRRKLIIE---KYSSMDEIMRECNSMAGH-LDVWKLLDDAHD 515 (524)
Q Consensus 448 g~~~~~~~~~~~~~~~~~~~llf-v~aAiLl~~r~~IL~---~~~~~deil~~ln~l~~~-iDv~~lL~~A~~ 515 (524)
...+| +++.+|....+.|.+ ...+..+|...+.++|+. .||+++++.|..
T Consensus 362 ------------------~i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~ 416 (848)
T KOG2222|consen 362 ------------------GINIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGE 416 (848)
T ss_pred ------------------cchhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhh
Confidence 34455 455555544444433 335778999999999875 589999988754
No 11
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.6e-22 Score=209.09 Aligned_cols=195 Identities=18% Similarity=0.229 Sum_probs=150.7
Q ss_pred HHHHHHHhhhhhcCcc-ccCCcchhh-----hhHHhh---hhhhhhcccChhhhhhhhhHHhhc---------------c
Q 009812 298 WQRIIRLDAVRANSEW-TIYSPSQAA-----VSEMKA---QRSAQIVGLKDYDHLEPSRIYHAA---------------R 353 (524)
Q Consensus 298 ~~~~I~~Dv~RT~p~~-~~f~~~~~~-----~~~~~~---~~igY~QGM~~y~llaP~l~Y~~~---------------~ 353 (524)
+...|++||.||||++ .+|+...-. +...++ .++||.|||. .++||++ |++- .
T Consensus 104 L~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMH--ElLAPl~-fVl~~D~q~l~h~se~~~~~ 180 (625)
T KOG1091|consen 104 LEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMH--ELLAPLL-FVLHVDNQALLHVSESLFDK 180 (625)
T ss_pred HHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhh--hhhhhhh-hheehhHHHHHHHHHhhhhh
Confidence 3456999999999999 788653211 111222 3899999999 6899975 4321 0
Q ss_pred c-------------chhHHH--HHHHHHHHhhhhcC------------------------CCChHHHHHHHHHHHHHHHh
Q 009812 354 L-------------EDHEAF--WCFAGFMKKARHNF------------------------RLDEVGIRRQLSIVSKIIKC 394 (524)
Q Consensus 354 l-------------~E~dAF--wcF~~Lm~~~~~~f------------------------~~~~~gi~~~l~~l~~LL~~ 394 (524)
+ .+.+++ =.|+.+|..-...| ....+-+......+..|+..
T Consensus 181 l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~ 260 (625)
T KOG1091|consen 181 LGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAK 260 (625)
T ss_pred cCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhh
Confidence 0 234444 35666664322111 11133455667778999999
Q ss_pred hCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHH-HHHhchhhhhhccccccccccccCCCCCCcHHHHHHH
Q 009812 395 KDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWE-VIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIA 473 (524)
Q Consensus 395 ~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD-~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~a 473 (524)
+|+.|+.||.++||.+.+|.+||+.+||.||||+.+++.||| ++++++ +...++.++++
T Consensus 261 ~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~--------------------pr~~Lv~~m~V 320 (625)
T KOG1091|consen 261 VDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDS--------------------PRGILVACMFV 320 (625)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccC--------------------chHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 888887 34579999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 009812 474 ACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLV 517 (524)
Q Consensus 474 AiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~ 517 (524)
++|+.+|+.|+. .+...+|+++-+.|.++|++++++.|.-+-
T Consensus 321 smLL~IRd~Lls--s~~~tcL~~Lm~yP~~~Dv~~~iekAl~l~ 362 (625)
T KOG1091|consen 321 SMLLYIRDSLLS--SEYQTCLQYLMNYPEIIDVDKFIEKALHLQ 362 (625)
T ss_pred HHHHHHHHHHHH--hcchhHHHHHhcCCCcCcHHHHHHHHHHHH
Confidence 999999999999 566779999999999999999999997665
No 12
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.86 E-value=6.8e-22 Score=212.21 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=133.2
Q ss_pred HHHhhhhhcCccccCCcchhhhhH--------HhhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhh-hh
Q 009812 302 IRLDAVRANSEWTIYSPSQAAVSE--------MKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKA-RH 372 (524)
Q Consensus 302 I~~Dv~RT~p~~~~f~~~~~~~~~--------~~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~-~~ 372 (524)
|++|++|..|+|+.|+...+--.. .+..+|||||-||- +++-+++|| .|++|||+++.+.+++ .+
T Consensus 247 IE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNI--V~s~lll~~----~EEeafwll~~lce~~ip~ 320 (671)
T KOG4347|consen 247 IEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSNPEVGYCQAMNI--VGSELLLFC----KEEEAFWLLSKLCEIYIPD 320 (671)
T ss_pred ccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccCCchhHHHHHHH--HHHhhhhhh----ccchHHHHHHHHHHHhccc
Confidence 566777777777777543221111 12247999999994 567777776 7999999999999995 45
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccc
Q 009812 373 NFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKS 452 (524)
Q Consensus 373 ~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~ 452 (524)
+|.....|...++.+++.|++...|.|++|+..+| ...+..+.||+++|...+|++..+||-|+||.+|.
T Consensus 321 yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~--------- 390 (671)
T KOG4347|consen 321 YYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGP--------- 390 (671)
T ss_pred ccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhccc---------
Confidence 67777889999999999999999999999999999 66779999999999999999999999999999994
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 009812 453 AWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMREC 497 (524)
Q Consensus 453 ~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~l 497 (524)
..++.+++|++..+.+.|+. +.+-.+++..+
T Consensus 391 -------------rvlFqiaLail~~N~~~il~-~~dDge~~~vl 421 (671)
T KOG4347|consen 391 -------------RVLFQIALAILKQNAERILS-ATDDGEAMMVL 421 (671)
T ss_pred -------------HHHHHHHHHHHHhhHHHhcc-cCCchHHHHHH
Confidence 56666888888889999997 44545555544
No 13
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.85 E-value=6.6e-21 Score=201.58 Aligned_cols=191 Identities=20% Similarity=0.277 Sum_probs=162.0
Q ss_pred HHHHHhhhhhcCccccCCcchhhhhH-----Hh---hhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhh
Q 009812 300 RIIRLDAVRANSEWTIYSPSQAAVSE-----MK---AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKAR 371 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~~~~~~-----~~---~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~ 371 (524)
+||++||+|+...-...+...+.-.. .| ....-|.||+- .+++||+ |+ .+++|..||-|+..|+-++.
T Consensus 392 rqievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgld--sLa~PFl-~l-n~Nne~laF~~~~~fi~kyc 467 (725)
T KOG1093|consen 392 RQIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLD--SLAAPFL-YL-NFNNELLAFACIATFIPKYC 467 (725)
T ss_pred hhhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcceeecCCCh--hhhhhHH-HH-hcCchHHHHHHHHHHHHHHH
Confidence 68999999998655444432222111 11 23678999998 5799996 53 24599999999999999976
Q ss_pred hc-CCCCh-HHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhcc
Q 009812 372 HN-FRLDE-VGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGI 449 (524)
Q Consensus 372 ~~-f~~~~-~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~ 449 (524)
++ |..|. .-++..|..|..++..+||+|++||..+|+.+.+||++||+|+|+.+||++..+.+||.++..+.
T Consensus 468 q~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~------ 541 (725)
T KOG1093|consen 468 QHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS------ 541 (725)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC------
Confidence 54 55544 45799999999999999999999999999999999999999999999999999999999999874
Q ss_pred ccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 009812 450 AKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVT 519 (524)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~~~ 519 (524)
.|.+++++|++.+.|+.||. .+|.|++.+|.+++ .+|++.++.....|+..
T Consensus 542 ----------------SFplmi~vAil~~lR~~LLa--~nfne~illf~d~p-dldId~~Ires~~l~e~ 592 (725)
T KOG1093|consen 542 ----------------SFPLMIGVAILIQLRDPLLA--CNFNECILLFSDLP-DLDIDVCIRESYHLMET 592 (725)
T ss_pred ----------------ccHHHHHHHHHHHhhhhhhh--CCchhheeeeccCC-cccHHHHHHHHhhhhhC
Confidence 79999999999999999998 79999999999999 99999999988887753
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.84 E-value=8e-20 Score=199.03 Aligned_cols=179 Identities=17% Similarity=0.278 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHhhhhhcCccccCCcch--hhhhHH---hh-----hhhhhhcccChhhhhhhhhHHhhcccchhHHHHHH
Q 009812 294 DFATWQRIIRLDAVRANSEWTIYSPSQ--AAVSEM---KA-----QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCF 363 (524)
Q Consensus 294 ~~~~~~~~I~~Dv~RT~p~~~~f~~~~--~~~~~~---~~-----~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF 363 (524)
++..-++.|.+|+.||||+|++|+..- +..+.. ++ .++|||||++. ++-+|+.+ .+|+.||=++
T Consensus 617 qLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~f---v~gvlllh---~~e~~afell 690 (948)
T KOG4436|consen 617 QLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSF---VAGVLLLH---MSEENAFELL 690 (948)
T ss_pred HHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchh---hhhhhHhh---cchhhHHHHH
Confidence 444446789999999999999997632 233222 22 27999999984 34433332 2999999999
Q ss_pred HHHHHh--hhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhc
Q 009812 364 AGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWAD 441 (524)
Q Consensus 364 ~~Lm~~--~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~ 441 (524)
..||-. ++..|.+|+..++.+++.|..+++.+.+.||+||+++.|.|.+|+.+||+|+|+..||+..|-||+|.+|..
T Consensus 691 k~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq 770 (948)
T KOG4436|consen 691 KFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQ 770 (948)
T ss_pred HHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhh
Confidence 999986 677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccC
Q 009812 442 QAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMA 501 (524)
Q Consensus 442 g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~ 501 (524)
|. -++|-++..|+..++.+|.++-+|++|+.+++...
T Consensus 771 ~t-----------------------evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~ 807 (948)
T KOG4436|consen 771 GT-----------------------EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTL 807 (948)
T ss_pred cc-----------------------chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhh
Confidence 83 34555555566655555555679999999987654
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-16 Score=161.14 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=135.9
Q ss_pred hhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh-hhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCC
Q 009812 332 AQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK-ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAED 410 (524)
Q Consensus 332 gY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~-~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~ 410 (524)
.|-||..| ++..+++.| .|.+|+-....|-.. ++++..+.+.+..++|..+..+|+..+|+||++|++-.++.
T Consensus 142 ~YYQGyHD--I~~tfLLv~----gE~~Al~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt 215 (395)
T KOG2595|consen 142 NYYQGYHD--IVVTFLLVV----GELEALSLMEELSTLHLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT 215 (395)
T ss_pred chhcchhH--HHHHHHHhh----hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc
Confidence 34488886 567766543 688888766666543 44455566778899999999999999999999999988876
Q ss_pred cchhHHHHHHhccccC-ChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCC
Q 009812 411 CFFVYRMVVVLFRREL-TFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSS 489 (524)
Q Consensus 411 ~~f~~rWfltlF~ref-p~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~ 489 (524)
+|+..|++|+|+..+ ++..++|++|.|++... -+.+|++|++++.+|+.|++...+
T Consensus 216 -lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~p----------------------l~piyv~A~vvL~r~~eIl~~~~d 272 (395)
T KOG2595|consen 216 -LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHP----------------------LLPIYVYAAVVLYRRSEILKCDCD 272 (395)
T ss_pred -eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc----------------------chhHHHHHHHhhhhHHHHHHHHhh
Confidence 599999999999998 78999999999999873 478999999999999999998789
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHh
Q 009812 490 MDEIMRECNSMAGHLDVWKLLDDAHDLVVTL 520 (524)
Q Consensus 490 ~deil~~ln~l~~~iDv~~lL~~A~~L~~~~ 520 (524)
+.-+..++..+|..+.++.++..+..++.++
T Consensus 273 ms~~H~lLs~iPq~lp~d~lik~s~~~i~~~ 303 (395)
T KOG2595|consen 273 MSLLHGLLSTIPQDLPYDTLIKESVLLITRK 303 (395)
T ss_pred hHHHHHHHHhCccccCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998887654
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.64 E-value=2.6e-16 Score=167.15 Aligned_cols=170 Identities=16% Similarity=0.258 Sum_probs=143.1
Q ss_pred HHHHhhhhhcCccccCCcchhh-------hhH---HhhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhh
Q 009812 301 IIRLDAVRANSEWTIYSPSQAA-------VSE---MKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKA 370 (524)
Q Consensus 301 ~I~~Dv~RT~p~~~~f~~~~~~-------~~~---~~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~ 370 (524)
+| .|+.||||.+..|....+. +.. .....+||||||.. +++|+++|+ .|++|||.++.+|...
T Consensus 188 ~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~--~a~~ll~~~----~ee~af~~lv~l~~~~ 260 (397)
T KOG1102|consen 188 II-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSS--IAAPLLLYL----PEEEAFPLLVKLMKNY 260 (397)
T ss_pred HH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhh--HhhhhhccC----chhhhhhhhhhhhhcc
Confidence 46 9999999999999762211 111 11237899999994 579998885 7999999999999974
Q ss_pred -hhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhcc
Q 009812 371 -RHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGI 449 (524)
Q Consensus 371 -~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~ 449 (524)
.+.|...+.|+...+..+..+++...|.++.|+...+++..+|+.+|++|+|...+|++.++||||+++.+|.
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~------ 334 (397)
T KOG1102|consen 261 GLDLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGV------ 334 (397)
T ss_pred chhcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhch------
Confidence 4556778889999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccC
Q 009812 450 AKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMA 501 (524)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~ 501 (524)
..+..+.+++++...+.+++ .+++.+++++....
T Consensus 335 ----------------~i~~~~~~~l~~~~~~~~~~--~~~e~~~~~l~~~~ 368 (397)
T KOG1102|consen 335 ----------------SILFRFSLALLKHKADDLLD--LDFESLLSYLRVDL 368 (397)
T ss_pred ----------------HHHHHHHHHHhhhhhHHHhh--ccHHHHHHHHhccc
Confidence 46666677777778888887 67999999997543
No 17
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.41 E-value=3.7e-13 Score=139.55 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=127.2
Q ss_pred hhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHh
Q 009812 327 KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARH-NFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQ 405 (524)
Q Consensus 327 ~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~~-~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~ 405 (524)
+.+++.|.--+..+.++.|++.. .++-++.|-||.++|+++.+ .-.+. ..-+..|+-||+.+||+|+.||..
T Consensus 104 K~Rn~~Y~~d~gWi~lL~pl~~L---~lprsd~fN~F~ai~~kYIPkdcrpk----g~~Fh~FRLLlqYHdPelc~~Ldt 176 (669)
T KOG3636|consen 104 KKRNMDYIKDIGWITLLEPLLLL---NLPRSDEFNVFFAITTKYIPKDCRPK----GQIFHLFRLLLQYHDPELCNHLDT 176 (669)
T ss_pred hccCCcccccccHHHHHHHHHHh---cCCcchhhhhhHhhhhcccCCCCCCC----CccchHHHHHHHhcCHHHhhhhhc
Confidence 44566777777788889997643 35899999999999998543 33332 134778999999999999999999
Q ss_pred cCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHH-HHHHH
Q 009812 406 LQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQR-RKLII 484 (524)
Q Consensus 406 ~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~-r~~IL 484 (524)
..+.|.+|+..||-+||+...+.+.+..|||.++-.++ +|++|+.+.+++.+ |++||
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD----------------------PF~vffLaliiLiNake~IL 234 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD----------------------PFLVFFLALIILINAKEEIL 234 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC----------------------ceehHHHHHHHhcccHHHHh
Confidence 99999999999999999999999999999999999874 67777777777764 78888
Q ss_pred hhc-CCHHHHHHHHhccCCCCC---HHHHHHHH
Q 009812 485 EKY-SSMDEIMRECNSMAGHLD---VWKLLDDA 513 (524)
Q Consensus 485 ~~~-~~~deil~~ln~l~~~iD---v~~lL~~A 513 (524)
+.. .+-++++++|.++|..+. |..+...|
T Consensus 235 q~~sdsKEe~ikfLenmp~~L~~eDvpDffsLA 267 (669)
T KOG3636|consen 235 QVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLA 267 (669)
T ss_pred hhccccHHHHHHHHHcCchhcccccchhHHHHH
Confidence 844 457899999999997765 55555555
No 18
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.3e-13 Score=130.16 Aligned_cols=113 Identities=15% Similarity=0.256 Sum_probs=87.0
Q ss_pred HHHHHhhhhhcCccccCCcchhh--hhHHhh--------hhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh
Q 009812 300 RIIRLDAVRANSEWTIYSPSQAA--VSEMKA--------QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 369 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~~~--~~~~~~--------~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~ 369 (524)
.-|.+|++|-||.|.+|...+.. ..+.+. .+.||||+-.- .+.++.- .+.+.||||||+.+.++
T Consensus 144 e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qap---iaa~llm---hmp~rdaf~~~vqicek 217 (267)
T KOG2221|consen 144 EGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAP---IAAVLLM---HMPARDAFWCFVQICEK 217 (267)
T ss_pred hhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhch---HHHHHHh---cccHHHHHHHHHHHHHH
Confidence 34899999999999999764322 111111 24566665432 2222211 13899999999999998
Q ss_pred -hhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHH
Q 009812 370 -ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMV 418 (524)
Q Consensus 370 -~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWf 418 (524)
++++|..+...|+.+-.+|..|+++.+|..|.||...++++.+|...||
T Consensus 218 ylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 218 YLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 5678888888999999999999999999999999999999999999997
No 19
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.25 E-value=4.4e-12 Score=137.71 Aligned_cols=337 Identities=23% Similarity=0.230 Sum_probs=189.5
Q ss_pred CCHHHHhhhcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009812 76 LLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIH 155 (524)
Q Consensus 76 lt~e~W~~~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~~l~~ 155 (524)
++.++|......+|++... ...+..+|.||+.+.+|+++|++++++|+|++|..||..+... ..+|..++.||.....
T Consensus 148 ~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~~ 225 (488)
T KOG2197|consen 148 LTLEEYNSNAMREGRLDES-VHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTSP 225 (488)
T ss_pred chhhhhhhhhhhccccccc-hhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheeccc
Confidence 9999999999999998876 4556699999999999999999999999999999999999999 9999999999998766
Q ss_pred hhccccccccccCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCcccccccc
Q 009812 156 RYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVL 235 (524)
Q Consensus 156 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~~~~~ 235 (524)
.+.... . ......+.|.+||.|+||.+.... |.++|....+
T Consensus 226 ~~~~~~-------------~--~~~~~~~~i~~dv~rtDr~~~~~~------------------------~~~n~~~~~l 266 (488)
T KOG2197|consen 226 EQSPES-------------E--GYLERKSRIEKDVGRTDRSLEFYE------------------------GEENPHLARL 266 (488)
T ss_pred cccccc-------------c--chhhhhhhhhhhccccchhhhhhh------------------------cccccCHHHH
Confidence 554210 0 022344668999999999874422 2111100000
Q ss_pred ccccCCCCCCCCCCCCCccccccccccccccccccCC-CCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhcCccc
Q 009812 236 TCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHE-NPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWT 314 (524)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~p~~~ 314 (524)
. +++-+|+..+.+--.- +..+--+|- .....+|.-+.|.=+=..|-.+ .
T Consensus 267 ~--------------------~iL~ty~~~~~d~GY~QgmSDllspi-----~~v~~de~~aFwcFv~fm~~~~-----~ 316 (488)
T KOG2197|consen 267 V--------------------DILLTYAVYDFDLGYCQGMSDLLSPI-----LIVMEDEVEAFWCFVGFMDRLR-----H 316 (488)
T ss_pred H--------------------HHHhhcccccCccccccCchhhcCcc-----eeeecCchHHHHHHHHHHHHHh-----h
Confidence 0 0111111000000000 000000000 0000122222232111112222 1
Q ss_pred cCCcchhhhhHHhhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHh
Q 009812 315 IYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKC 394 (524)
Q Consensus 315 ~f~~~~~~~~~~~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~~~f~~~~~gi~~~l~~l~~LL~~ 394 (524)
-|..++..+...-..-. .+. .+..|.+-++.-.++-.+.|.||.-++-.++.-|..... +. |-+++..
T Consensus 317 nF~~d~~~~~~Ql~~~~----~li--~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~-----l~-LWEvlw~ 384 (488)
T KOG2197|consen 317 NFRIDQSGMQTQLAQLS----SLI--QELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDS-----LR-LWEVLWT 384 (488)
T ss_pred cCccccccHHHHhhhhh----hhc--cccCHHHHhhccccCCCccceeeehhhcccccccccccH-----HH-HHHHHHh
Confidence 23322222221111111 111 235555433322346788899999998887765544321 11 1122222
Q ss_pred hCHHHHHHHH-hcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccc--cccCCCCCCcHHHHH
Q 009812 395 KDNHLYRHLE-QLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGR--MRLRAPPTDDLLLYA 471 (524)
Q Consensus 395 ~dP~L~~hL~-~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~--~~~~~~~~~~~llfv 471 (524)
..|--+=||. ..++-.. +.....++.....|.. +.......+...++.
T Consensus 385 ~~~~~~f~~~~~~~~l~~-----------------------------~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~ 435 (488)
T KOG2197|consen 385 DLPSPHFHLYVAPAILNK-----------------------------DPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLV 435 (488)
T ss_pred cCccchHHHHHHHhhhhc-----------------------------chHHHHhcCccchhHHhhcccccccchhhhHHH
Confidence 2111111111 1111000 1111112222222222 333344556778888
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhhhcC
Q 009812 472 IAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI 524 (524)
Q Consensus 472 ~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~~~~~~~i 524 (524)
+|..+......+++...+++++...++.+.+.+|+.+....|..|..+++.+|
T Consensus 436 ~A~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 488 (488)
T KOG2197|consen 436 RAEALERQNKQMEEPPEVMDEIESILQITAGPLDAGKLRIGADKLHRTFRMKI 488 (488)
T ss_pred HHHHHHHHHHhccccccchhhhhhcccCCCCCCCcccccccccccccccccCC
Confidence 88888888888888888999999999999999999999999998888888764
No 20
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.21 E-value=1.4e-12 Score=136.39 Aligned_cols=282 Identities=21% Similarity=0.277 Sum_probs=199.6
Q ss_pred hcCCCCCHHHHhhhcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009812 71 RRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKEC 150 (524)
Q Consensus 71 ~r~~plt~e~W~~~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw 150 (524)
.....||+..|.+|..+ .-+. + -.++...++||++..+|+.+||+++|-|...+...+-+.........|.+-.-.|
T Consensus 526 da~~glt~~~W~qy~~d-~t~~-e-~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~ 602 (813)
T KOG1648|consen 526 DASAGLTEKFWKQYRAD-PTIE-E-WRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITL 602 (813)
T ss_pred CccccccHHHHHHHhcC-CchH-H-HHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHH
Confidence 46678999999999764 2333 2 3688999999999999999999999999999999888888888888888766566
Q ss_pred HHHhhhhccccccccccCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCccc
Q 009812 151 RKIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDER 230 (524)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~ 230 (524)
..-.- -.|++||.|.+|++ .+|...+
T Consensus 603 ~~~~~----------------------------~~~~kd~e~~~~~~------------------------~~fs~~~-- 628 (813)
T KOG1648|consen 603 FRANL----------------------------HRIDKDVERCDRNL------------------------MFFSNKD-- 628 (813)
T ss_pred Hhhhe----------------------------eeecchhhhCcchh------------------------eeecCCc--
Confidence 53100 12567777766553 1111000
Q ss_pred cccccccccCCCCCCCCCCCCCccccccccccccccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhc
Q 009812 231 DKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRAN 310 (524)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~ 310 (524)
++ +. .|
T Consensus 629 ---------------------------------------------------------------~l-------es--~~-- 634 (813)
T KOG1648|consen 629 ---------------------------------------------------------------NL-------ES--RR-- 634 (813)
T ss_pred ---------------------------------------------------------------ch-------hh--he--
Confidence 00 00 00
Q ss_pred CccccCCcchhhhhHHhhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHH
Q 009812 311 SEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSK 390 (524)
Q Consensus 311 p~~~~f~~~~~~~~~~~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~~~f~~~~~gi~~~l~~l~~ 390 (524)
.+|- -..+.+.-||.|||.| +++|.+.- ..||...-=||.-+|-+-++.|.. .+|+.+.|-.++
T Consensus 635 ---~~~~------~~~~~l~~~~~~~~~d--l~~p~~~~---~ed~~~~~e~~s~~~~~q~~~~~q-~~~~~~~l~~~r- 698 (813)
T KOG1648|consen 635 ---VMYT------YVRRNLEEGYTQGMCD--LLAPLLVT---FEDEALTLECFSLLMLRQRGKFPQ-RPGMSKCLLNLR- 698 (813)
T ss_pred ---eeee------eeccccccccccchhh--ccCCcCCC---hhhcccccCCCcHHHHHhcccCCC-CCCccccccccc-
Confidence 0110 0112235699999995 79997532 236666666999999887777754 346666666565
Q ss_pred HHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHH
Q 009812 391 IIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLY 470 (524)
Q Consensus 391 LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llf 470 (524)
+++..+|-.. -+.. .....|+||+.-|++++..+....+|+++|+.... .-++.+.+|
T Consensus 699 ~~~v~~~l~s-~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~ 756 (813)
T KOG1648|consen 699 LIQVVDPLIS-DIDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRL-----------------RITDDFAIF 756 (813)
T ss_pred chhhhcchhc-chhh----hhhcceeeeccCcccccCCCCcceeeEeecccccc-----------------ccCcchhhh
Confidence 7888888322 2221 22355999999999999999999999999998632 135688899
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhhh
Q 009812 471 AIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHA 522 (524)
Q Consensus 471 v~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~~~~~~ 522 (524)
+..+. -.+.+.++....+..++++++|.+...-|.+.++..|..-++.+++
T Consensus 757 ~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~~~~~l~~ 807 (813)
T KOG1648|consen 757 FGLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVKCLQN 807 (813)
T ss_pred hhhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcchHHHHHH
Confidence 88776 6678888887788999999999999888888888877766666654
No 21
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.88 E-value=8.7e-09 Score=113.84 Aligned_cols=170 Identities=11% Similarity=0.019 Sum_probs=132.4
Q ss_pred HHHHhhhhhcCccccCCcchhh--------hh---------HHhhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHH
Q 009812 301 IIRLDAVRANSEWTIYSPSQAA--------VS---------EMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCF 363 (524)
Q Consensus 301 ~I~~Dv~RT~p~~~~f~~~~~~--------~~---------~~~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF 363 (524)
+|..|+.||.|+|.+|...... +. ....+.+|||||=+ +.+||+-...+++.||-.+
T Consensus 230 ~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~------~m~Gll~l~~~~E~assv~ 303 (948)
T KOG4436|consen 230 IIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSA------FMVGLLLLQMPVEEASSVK 303 (948)
T ss_pred HHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchH------HHHHHHHhcCcHHHHHHHH
Confidence 4788888888888888652211 11 12235899999954 4455543334899999999
Q ss_pred HHHHHh--hhhcCCCChHHHHHHHHHHHHHHHhhCH-HHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHh
Q 009812 364 AGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKCKDN-HLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWA 440 (524)
Q Consensus 364 ~~Lm~~--~~~~f~~~~~gi~~~l~~l~~LL~~~dP-~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a 440 (524)
+.+|.. ++..|.+.+..+-..+..+....+...| .|+.|+.+.+++..+|+-.||++.|...||+...-++.|+|.+
T Consensus 304 ~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~ 383 (948)
T KOG4436|consen 304 VQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSS 383 (948)
T ss_pred HHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhcccccccccc
Confidence 999986 6678988888888889999999999999 9999999999999999999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhc
Q 009812 441 DQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNS 499 (524)
Q Consensus 441 ~g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~ 499 (524)
+|. .+.+.+..|++ .+..++-....|++.+.++++.
T Consensus 384 egl----------------------lk~fr~~ia~~-~~~~d~~~~s~D~EG~~~~~qr 419 (948)
T KOG4436|consen 384 EGL----------------------LKRFRDSIAYL-HQLRDIELESLDMEGMLSYFQR 419 (948)
T ss_pred ccH----------------------HHHHhhhHHHH-HHHhhhhhhccCccccccchhh
Confidence 884 33334555555 4333333334799999888873
No 22
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.38 E-value=1e-07 Score=99.16 Aligned_cols=75 Identities=24% Similarity=0.526 Sum_probs=54.9
Q ss_pred chhHHHHHHH---HHHhhhhhcCccccCCcch-hhhhHH-h--------hhhhhhhcccChhhhhhhhhHHhhcccchhH
Q 009812 292 DEDFATWQRI---IRLDAVRANSEWTIYSPSQ-AAVSEM-K--------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHE 358 (524)
Q Consensus 292 ~e~~~~~~~~---I~~Dv~RT~p~~~~f~~~~-~~~~~~-~--------~~~igY~QGM~~y~llaP~l~Y~~~~l~E~d 358 (524)
+|+..-|+.. +++||.||..++++|.-+. .++... + ...+||.|||+| +++|.+.-+ .+|.+
T Consensus 486 eeh~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsd--llapvlcev---qnese 560 (781)
T KOG2224|consen 486 EEHIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSD--LLAPVLCEV---QNESE 560 (781)
T ss_pred HHHHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchh--hcchhhhhh---ccccc
Confidence 4566666653 7899999999999996422 222111 1 126899999995 799976443 39999
Q ss_pred HHHHHHHHHHhhh
Q 009812 359 AFWCFAGFMKKAR 371 (524)
Q Consensus 359 AFwcF~~Lm~~~~ 371 (524)
+||||++||..|.
T Consensus 561 tfwcfvglmqgms 573 (781)
T KOG2224|consen 561 TFWCFVGLMQGMS 573 (781)
T ss_pred hhhhhhhhhccch
Confidence 9999999998765
No 23
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.13 Score=52.20 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=94.9
Q ss_pred hhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh--hh-hcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhc
Q 009812 330 RSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK--AR-HNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQL 406 (524)
Q Consensus 330 ~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~--~~-~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~ 406 (524)
+|.+|-.+- +.++-++-|- .+|++.|---+.++.- -. ................|..|+.++-..-++.+...
T Consensus 127 disfcpalp--avvalllhys---ideaecfekacrilacndpgrrlidqsflafesscmtfgdlvnkycqaahklmvav 201 (559)
T KOG2801|consen 127 DISFCPALP--AVVALLLHYS---IDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAV 201 (559)
T ss_pred CcccCcchH--HHHHHHHHhc---ccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 345555555 3455555553 3888866544444321 00 00001112233445556777777776666666554
Q ss_pred CCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHH-HHHHHHHHHHHHH--
Q 009812 407 QAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLY-AIAACVLQRRKLI-- 483 (524)
Q Consensus 407 ~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llf-v~aAiLl~~r~~I-- 483 (524)
.-+.+...-.|-.-+| .|+|+-...|++|+|+.+|+ .++| +++|+|....+.-
T Consensus 202 sedvlqvyadwqrwlf-gelplcyfarvfdvflvegy-----------------------kvlyrvalailkffhkvrag 257 (559)
T KOG2801|consen 202 SEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGY-----------------------KVLYRVALAILKFFHKVRAG 257 (559)
T ss_pred hHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecch-----------------------HHHHHHHHHHHHHHHHhhcC
Confidence 3333334446665555 57999999999999999995 4555 4555554444322
Q ss_pred --HhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 009812 484 --IEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLV 517 (524)
Q Consensus 484 --L~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~ 517 (524)
++.+.--.+|-.+..++..+...+++|++|..+.
T Consensus 258 qplesdsvkqdirtfvrdiaktvspekllekafair 293 (559)
T KOG2801|consen 258 QPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIR 293 (559)
T ss_pred CCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 3332334578888889998999999999987764
No 24
>PF14961 BROMI: Broad-minded protein
Probab=94.37 E-value=0.21 Score=59.27 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCC
Q 009812 384 QLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPP 463 (524)
Q Consensus 384 ~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~ 463 (524)
..+.++.||+.-.|.+|.-|.-.|..+...|.||+--+|=.-+++..++.--=.....|.
T Consensus 1166 ~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~-------------------- 1225 (1296)
T PF14961_consen 1166 SCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP-------------------- 1225 (1296)
T ss_pred HHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc--------------------
Confidence 467899999999999999999999999999999999999999999887766655555553
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHhh
Q 009812 464 TDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMA-GHLDVWKLLDDAHDLVVTLH 521 (524)
Q Consensus 464 ~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~-~~iDv~~lL~~A~~L~~~~~ 521 (524)
++.+|+|+|++.+....||+.. .-.++.-+++..+ ....+.+-+.--+.|=.+++
T Consensus 1226 --dyqvY~~VailkHlq~~ilq~~-q~q~L~~flke~~l~gF~~~~~~~yM~~Le~~yR 1281 (1296)
T PF14961_consen 1226 --DYQVYICVAILKHLQPEILQHT-QTQDLQVFLKEEALRGFRVSDYLEYMENLEQRYR 1281 (1296)
T ss_pred --cceeehhHHHHHHhhHHHHHhh-hhchHHHHhhhccccceeHHhHHHHHHHHHHHhH
Confidence 8999999999999999999854 3334555666543 34667766666666665554
No 25
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=34.00 E-value=29 Score=34.30 Aligned_cols=13 Identities=38% Similarity=0.711 Sum_probs=7.5
Q ss_pred CchhHHHHHHHHH
Q 009812 291 TDEDFATWQRIIR 303 (524)
Q Consensus 291 ~~e~~~~~~~~I~ 303 (524)
|.|+++.-|.+|.
T Consensus 161 TkEEyearQSvIR 173 (225)
T PF10500_consen 161 TKEEYEARQSVIR 173 (225)
T ss_pred CHHHHHHHHhhhe
Confidence 4556666565555
No 26
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=28.74 E-value=66 Score=28.63 Aligned_cols=55 Identities=15% Similarity=0.469 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhch
Q 009812 380 GIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQ 442 (524)
Q Consensus 380 gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g 442 (524)
+|+..+..+.+-|. .+|..++.+-+ |||.+..--=.|.++++.++.+|+++|...
T Consensus 3 ~lk~~l~~l~~~l~-~d~~~F~~~Y~-------f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~ 57 (117)
T PF03556_consen 3 KLKQKLPELRKELR-SDPEYFKKFYR-------FTFDFAREEGQRSLPLETAIAYWRLLFSGR 57 (117)
T ss_dssp HHHHCHHHHHHHCC-HSHHHHHHHHH-------HHHHHHS-TT-SSEEHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHH-------HHHHHhCCcccCCCCHHHHHHHHHHHcCCC
Confidence 34555555544442 25666666653 788877766689999999999999999754
No 27
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.26 E-value=45 Score=36.46 Aligned_cols=26 Identities=38% Similarity=0.696 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHhCC
Q 009812 97 KFLKKVRSGGVDPSIRAEVWPFLLGV 122 (524)
Q Consensus 97 ~l~k~V~~gGi~p~lR~evW~fLLG~ 122 (524)
.-+|+..++|||++.|++||..+.|.
T Consensus 147 ~elk~liRkGiP~~~R~~VW~~~~g~ 172 (436)
T KOG2058|consen 147 DELKRLIRKGIPPELRGEVWWVLSGA 172 (436)
T ss_pred HHHHHHHHcCCChhhhhHHHHHHhcc
Confidence 45777889999999999999999993
No 28
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=23.43 E-value=44 Score=28.45 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=28.4
Q ss_pred CCCCHHHHhhhcCCCCcccchhHHHHHHHhcCCC-CcchHHHHHHHHh
Q 009812 74 HALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGV-DPSIRAEVWPFLL 120 (524)
Q Consensus 74 ~plt~e~W~~~fd~dGrl~~~~~~l~k~V~~gGi-~p~lR~evW~fLL 120 (524)
+|++......|.-.+|--. .+..+++-..|+ ||=+|.|||+|-=
T Consensus 7 ep~~~P~ys~ykf~~~pqL---~~~~k~La~~GLkDPW~RNevwrY~~ 51 (100)
T KOG4631|consen 7 EPMELPDYSQYKFIEGPQL---ETIQKKLAAKGLKDPWGRNEVWRYMG 51 (100)
T ss_pred CcccCCCcceeeeccCccH---HHHHHHHHHccccCchhcchhhhccC
Confidence 3444444444433334321 467888888888 8889999999864
No 29
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=23.01 E-value=1.1e+02 Score=23.58 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=34.0
Q ss_pred HHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccC
Q 009812 388 VSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRREL 426 (524)
Q Consensus 388 l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref 426 (524)
|.+|--++.|+--+.|++.||+..+-.+.=|+.||....
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 567777889999999999999999999999999997763
Done!