Query 009812
Match_columns 524
No_of_seqs 299 out of 1528
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 1.8E-45 6.2E-50 388.9 25.6 299 78-522 8-384 (396)
2 2qfz_A TBC1 domain family memb 100.0 2.4E-45 8.2E-50 380.8 24.7 281 77-522 25-338 (345)
3 2qq8_A TBC1 domain family memb 100.0 2.3E-44 8E-49 372.2 21.9 191 299-519 110-311 (334)
4 3qye_A TBC1 domain family memb 100.0 1.9E-43 6.4E-48 364.4 11.8 188 300-516 105-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 3.4E-41 1.2E-45 344.7 13.5 187 300-516 71-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 2.2E-39 7.5E-44 328.9 19.9 192 300-520 84-289 (292)
7 3qwl_A TBC1 domain family memb 100.0 5.2E-39 1.8E-43 326.4 18.3 157 333-521 131-287 (294)
8 3kev_A Galieria sulfuraria DCU 40.8 63 0.0022 30.2 7.2 69 365-442 64-132 (199)
9 4gba_A DCN1-like protein 3; E3 39.1 42 0.0014 32.0 5.7 56 377-441 75-132 (221)
10 3tdu_A DCN1-like protein 1; E2 36.5 36 0.0012 31.9 4.8 58 376-442 73-130 (200)
11 1r6x_A ATP:sulfate adenylyltra 24.7 47 0.0016 34.4 3.6 37 90-126 352-390 (395)
12 3bq3_A Defective in cullin ned 22.5 1.4E+02 0.0048 29.1 6.4 69 365-442 130-199 (270)
13 4g26_A Pentatricopeptide repea 22.4 2.6E+02 0.009 29.2 9.1 46 398-443 126-171 (501)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.8e-45 Score=388.85 Aligned_cols=299 Identities=17% Similarity=0.293 Sum_probs=230.8
Q ss_pred HHHHhhhcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009812 78 PKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRY 157 (524)
Q Consensus 78 ~e~W~~~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~~l~~~~ 157 (524)
.++|.+++...+. .+. .++++ +.++||++++|++||++|||++|.+. ++|+.+.++++.+|..++++|..-
T Consensus 8 ~~kw~~lL~~~~~-~d~-~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~---- 78 (396)
T 1fkm_A 8 ISKFDNILKDKTI-INQ-QDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSD---- 78 (396)
T ss_dssp HHHHHHHHSSCSB-CCH-HHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSS----
T ss_pred HHHHHHHHcCCCC-CCH-HHHHH-HHHcCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 4789999987652 333 45665 55689999999999999999999986 478889999999999999886310
Q ss_pred ccccccccccCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCcccccccccc
Q 009812 158 EKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTC 237 (524)
Q Consensus 158 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~~~~~~~ 237 (524)
. . +
T Consensus 79 ~----------------------------------~-------------------------------~------------ 81 (396)
T 1fkm_A 79 Q----------------------------------H-------------------------------S------------ 81 (396)
T ss_dssp S----------------------------------C-------------------------------S------------
T ss_pred c----------------------------------C-------------------------------c------------
Confidence 0 0 0
Q ss_pred ccCCCCCCCCCCCCCccccccccccccccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhcCccccCC
Q 009812 238 EDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYS 317 (524)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~p~~~~f~ 317 (524)
.-....++|.+||.||||++.+|.
T Consensus 82 --------------------------------------------------------~~~~~~~qI~~Dv~RT~p~~~~F~ 105 (396)
T 1fkm_A 82 --------------------------------------------------------RDIPTWHQIEIDIPRTNPHIPLYQ 105 (396)
T ss_dssp --------------------------------------------------------THHHHHHHHHHHGGGSSTTSGGGG
T ss_pred --------------------------------------------------------ccHHHHHHHHHHhhhhCCCccccc
Confidence 001234679999999999999997
Q ss_pred cchhhhhHHh--------hhhhhhhcccChhhhhhhhhHHhhc---------------c---cc-------hhHHHHHHH
Q 009812 318 PSQAAVSEMK--------AQRSAQIVGLKDYDHLEPSRIYHAA---------------R---LE-------DHEAFWCFA 364 (524)
Q Consensus 318 ~~~~~~~~~~--------~~~igY~QGM~~y~llaP~l~Y~~~---------------~---l~-------E~dAFwcF~ 364 (524)
...+.....+ ...+||||||++ +++|++..+.. . ++ |++|||||+
T Consensus 106 ~~~~~~~L~rIL~aya~~np~iGY~QGmn~--i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~ 183 (396)
T 1fkm_A 106 FKSVQNSLQRILYLWAIRHPASGYVQGIND--LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLT 183 (396)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTTCSCTTHHH--HHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCCCcccCcHH--HHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHH
Confidence 5432222222 237999999995 79998753311 0 12 999999999
Q ss_pred HHHHhhhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhh
Q 009812 365 GFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAA 444 (524)
Q Consensus 365 ~Lm~~~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~ 444 (524)
+||++++++|..++.|+...+..|..||+.+||+||+||+++|+++.+|+++||+|+|+++||+++++||||++|++|..
T Consensus 184 ~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~ 263 (396)
T 1fkm_A 184 KLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQ 263 (396)
T ss_dssp HHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999810
Q ss_pred hh-----------hccccccccccccCC------------------------------CCCCcHHHHHHHHHHHHHHHHH
Q 009812 445 IR-----------AGIAKSAWGRMRLRA------------------------------PPTDDLLLYAIAACVLQRRKLI 483 (524)
Q Consensus 445 ~~-----------~g~~~~~~~~~~~~~------------------------------~~~~~~llfv~aAiLl~~r~~I 483 (524)
.. ++-....-...+... .+...+++|+|+|+|+.+|+.|
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~L 343 (396)
T 1fkm_A 264 EVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQL 343 (396)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHHHTHHHH
T ss_pred cccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000000000 0113789999999999999999
Q ss_pred HhhcCCHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHhhh
Q 009812 484 IEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDLVVTLHA 522 (524)
Q Consensus 484 L~~~~~~deil~~ln~l~~~----iDv~~lL~~A~~L~~~~~~ 522 (524)
|+ ++|++++++|+++|.. .|++.+|..|..+...+++
T Consensus 344 l~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~ 384 (396)
T 1fkm_A 344 ME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKD 384 (396)
T ss_dssp TT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred Hh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhc
Confidence 98 8999999999999864 6899999999988877764
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=2.4e-45 Score=380.78 Aligned_cols=281 Identities=19% Similarity=0.331 Sum_probs=228.2
Q ss_pred CHHHHhhhcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009812 77 LPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHR 156 (524)
Q Consensus 77 t~e~W~~~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~~l~~~ 156 (524)
..++|.++++.. ..+. .++++.+ ++|||+++|++||++|||++|.+. ++|+...++++.+|..++++|.....
T Consensus 25 r~~kw~~~l~~~--~~d~-~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~- 97 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDL-EELRRLS-WSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN- 97 (345)
T ss_dssp HHHHHHHHHHCS--BCCH-HHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCC--CCCH-HHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC-
Confidence 357899999754 3333 5666655 689999999999999999999864 57888999999999999988743100
Q ss_pred hccccccccccCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCccccccccc
Q 009812 157 YEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLT 236 (524)
Q Consensus 157 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~~~~~~ 236 (524)
+ +
T Consensus 98 --------------------------------~--------------------------------------~-------- 99 (345)
T 2qfz_A 98 --------------------------------D--------------------------------------E-------- 99 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------c--------------------------------------c--------
Confidence 0 0
Q ss_pred cccCCCCCCCCCCCCCccccccccccccccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhcCccccC
Q 009812 237 CEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIY 316 (524)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~p~~~~f 316 (524)
.-....++|.+||+||+|+ .+|
T Consensus 100 ---------------------------------------------------------~~~~~~~~I~~Dv~RT~p~-~~F 121 (345)
T 2qfz_A 100 ---------------------------------------------------------VHQDTYRQIHIDIPRMSPE-ALI 121 (345)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHGGGCSCH-HHH
T ss_pred ---------------------------------------------------------chHHHHHHHHHhCcccCCc-ccc
Confidence 0002246799999999999 999
Q ss_pred CcchhhhhHH--------hhhhhhhhcccChhhhhhhhhHHhh-cc--------------------cchhHHHHHHHHHH
Q 009812 317 SPSQAAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHA-AR--------------------LEDHEAFWCFAGFM 367 (524)
Q Consensus 317 ~~~~~~~~~~--------~~~~igY~QGM~~y~llaP~l~Y~~-~~--------------------l~E~dAFwcF~~Lm 367 (524)
.......... ....+||||||++ +++|++..+. .. .+|++|||||++||
T Consensus 122 ~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~--i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm 199 (345)
T 2qfz_A 122 LQPKVTEIFERILFIWAIRHPASGYVQGIND--LVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLL 199 (345)
T ss_dssp TSHHHHHHHHHHHHHHHHHCTTTCCCTTHHH--HHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHCCCCCcccChHH--HHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 7543222111 1247999999995 6999875332 11 13999999999999
Q ss_pred HhhhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhh
Q 009812 368 KKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 447 (524)
Q Consensus 368 ~~~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~ 447 (524)
++++++|..+++|+...+..+..||+.++|+||+||+++|+++.+|+++||+|+|+++||+++++||||++|++|..
T Consensus 200 ~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~--- 276 (345)
T 2qfz_A 200 DGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDG--- 276 (345)
T ss_dssp HTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTT---
T ss_pred HccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999841
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHhhh
Q 009812 448 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDLVVTLHA 522 (524)
Q Consensus 448 g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~----iDv~~lL~~A~~L~~~~~~ 522 (524)
...+++|+|+|+|+.+|+.||. +.++++++++|++++.. .|++.++..|..|...++.
T Consensus 277 ----------------~~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~ 338 (345)
T 2qfz_A 277 ----------------FSHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFAD 338 (345)
T ss_dssp ----------------TTTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHHHh
Confidence 1248899999999999999996 47999999999999865 3799999999999988753
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=372.21 Aligned_cols=191 Identities=12% Similarity=0.211 Sum_probs=169.1
Q ss_pred HHHHHHhhhhhcCccccCCcchh-hhhHHh--------hhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh
Q 009812 299 QRIIRLDAVRANSEWTIYSPSQA-AVSEMK--------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 369 (524)
Q Consensus 299 ~~~I~~Dv~RT~p~~~~f~~~~~-~~~~~~--------~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~ 369 (524)
.++|++||+||||++.+|..... .....+ ..++|||||||+ +++|++.++ +|++|||||++||++
T Consensus 110 ~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~--iaa~lLl~~----~E~~aF~~~~~l~~~ 183 (334)
T 2qq8_A 110 LELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSF--IAAVLILNL----DTADAFIAFSNLLNK 183 (334)
T ss_dssp HHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHH--HHHHHHHHS----CHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHH--HHHHHHhcC----CHHHHHHHHHHHHHh
Confidence 46899999999999999975321 111111 247999999995 688887663 899999999999998
Q ss_pred h--hhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhh
Q 009812 370 A--RHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 447 (524)
Q Consensus 370 ~--~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~ 447 (524)
+ ..+|..++.++...+..|..||+..+|+||+||+++|+++.+|+++||+|+|+++||++.++||||++|++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~---- 259 (334)
T 2qq8_A 184 PCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE---- 259 (334)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH----
T ss_pred hhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC----
Confidence 5 4678889999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 009812 448 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVT 519 (524)
Q Consensus 448 g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~~~ 519 (524)
.+++++++|+|..+++.|++ .++++++++|+++|..+|++.++..|..+..+
T Consensus 260 ------------------~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~ 311 (334)
T 2qq8_A 260 ------------------EFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQMQ 311 (334)
T ss_dssp ------------------HHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCCCE
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHccCc
Confidence 78999999999999999998 69999999999999999999999999887643
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.9e-43 Score=364.44 Aligned_cols=188 Identities=16% Similarity=0.240 Sum_probs=164.3
Q ss_pred HHHHHhhhhhcCccccCCcch--hhhhHH--------hhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh
Q 009812 300 RIIRLDAVRANSEWTIYSPSQ--AAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 369 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~--~~~~~~--------~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~ 369 (524)
++|++||+||||++.+|.... +..... ...++||||||++ +++|++.|+ +|++|||||++||++
T Consensus 105 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~--i~a~ll~~~----~E~~aF~~l~~l~~~ 178 (331)
T 3qye_A 105 HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSF--VAGILLLHM----SEEEAFKMLKFLMFD 178 (331)
T ss_dssp HHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHH--HHHHHHTTS----CHHHHHHHHHHHHTT
T ss_pred hHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHH--HHHHHHHHh----hHHHHHHHHHHHHHh
Confidence 579999999999999998642 221111 2247999999995 688887663 899999999999997
Q ss_pred --hhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhh
Q 009812 370 --ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 447 (524)
Q Consensus 370 --~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~ 447 (524)
++++|.+++.|++..+..+..||+.++|+||+||+++|+++.+|+++||+|+|+++||++.++||||++|++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~---- 254 (331)
T 3qye_A 179 MGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT---- 254 (331)
T ss_dssp TCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT----
T ss_pred cCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc----
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCC---CHHHHHHHHHHH
Q 009812 448 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHL---DVWKLLDDAHDL 516 (524)
Q Consensus 448 g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~i---Dv~~lL~~A~~L 516 (524)
.+++|+++|+|..+++.|++ +.++++++++|++...++ |++.+++.|..+
T Consensus 255 ------------------~~l~~valaiL~~~~~~ll~-~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 255 ------------------EVIFKVALSLLGSHKPLILQ-HENLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp ------------------THHHHHHHHHHHHTHHHHHT-CCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 68999999999999999997 459999999999855455 788899888654
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-41 Score=344.70 Aligned_cols=187 Identities=11% Similarity=0.198 Sum_probs=163.7
Q ss_pred HHHHHhhhhhcCccccCCcch--hhhhHHh--------hhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHh
Q 009812 300 RIIRLDAVRANSEWTIYSPSQ--AAVSEMK--------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 369 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~--~~~~~~~--------~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~ 369 (524)
++|++||+||||++.+|.... +.....+ ..++||||||++ +++|++.++ +|++|||||+++|++
T Consensus 71 ~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~--iaa~lL~~~----~e~~aF~~l~~l~~~ 144 (310)
T 3hzj_A 71 SVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSF--LAAVLLLHM----PEEQAFCVLVKIMYD 144 (310)
T ss_dssp HHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHH--HHHHHHHHS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHH--HHHHHHHhC----CHHHHHHHHHHHHhc
Confidence 469999999999999997642 2211111 247999999995 688887664 899999999999987
Q ss_pred --hhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhh
Q 009812 370 --ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 447 (524)
Q Consensus 370 --~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~ 447 (524)
++++|..++.|+...+..+..||+.++|+||+||+++|+++.+|+++||+|+|+++||++.++||||++|++|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~---- 220 (310)
T 3hzj_A 145 YGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL---- 220 (310)
T ss_dssp SCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT----
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc----
Confidence 78889888999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh-ccCC----CCCHHHHHHHHHHH
Q 009812 448 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECN-SMAG----HLDVWKLLDDAHDL 516 (524)
Q Consensus 448 g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln-~l~~----~iDv~~lL~~A~~L 516 (524)
.+++++++|+|..+|+.|++ .++++++++|+ .+|. ..|++.+++.|..+
T Consensus 221 ------------------~~l~~v~lail~~~~~~Ll~--~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 221 ------------------NIIFHVALALLKTSKEDLLQ--ADFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp ------------------THHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 78899999999999999998 59999999996 4553 36899999999776
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.2e-39 Score=328.93 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=167.0
Q ss_pred HHHHHhhhhhcCccccCCcch--hh--hhH--------HhhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHH
Q 009812 300 RIIRLDAVRANSEWTIYSPSQ--AA--VSE--------MKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFM 367 (524)
Q Consensus 300 ~~I~~Dv~RT~p~~~~f~~~~--~~--~~~--------~~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm 367 (524)
+||.+||.||||+++.|.... +. ... ....++|||||||+ +++|++.++ +|++|||||++||
T Consensus 84 ~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~--iaa~lLl~~----~e~~aF~~l~~l~ 157 (292)
T 4hl4_A 84 QQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHD--IVVTFLLVV----GERLATSLVEKLS 157 (292)
T ss_dssp HHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHH--HHHHHHHHH----CHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHH--HHHHHHHHc----CHHHHHHHHHHHH
Confidence 579999999999999885421 11 111 12248999999995 699988653 8999999999999
Q ss_pred Hh-hhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCC-hhhHHHHHHHHHhchhhh
Q 009812 368 KK-ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELT-FEQTLCLWEVIWADQAAI 445 (524)
Q Consensus 368 ~~-~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp-~~~vlrlWD~~~a~g~~~ 445 (524)
+. ++++|.+++.|+..++..+..+|+.+||+||+||++++++ .+||++||+|+|++++| ++.++||||++|++|.
T Consensus 158 ~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~-- 234 (292)
T 4hl4_A 158 THHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP-- 234 (292)
T ss_dssp HTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT--
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC--
Confidence 97 5677888888999999999999999999999999999994 68999999999999996 9999999999999984
Q ss_pred hhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHh
Q 009812 446 RAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTL 520 (524)
Q Consensus 446 ~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~~~~ 520 (524)
.+++|+++|+|+.+|+.||+...++++++.+++++|..+|++.++..|..|+.++
T Consensus 235 --------------------~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~ 289 (292)
T 4hl4_A 235 --------------------LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQF 289 (292)
T ss_dssp --------------------THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHS
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence 6999999999999999999855689999999999999999999999999999875
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=326.43 Aligned_cols=157 Identities=11% Similarity=0.151 Sum_probs=139.9
Q ss_pred hhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcc
Q 009812 333 QIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCF 412 (524)
Q Consensus 333 Y~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~ 412 (524)
++|||.+ +++|++.. ..+|+||||||++||++++++|..+++|+++.+ +.||+.+||+|++||+++|+.+.+
T Consensus 131 ~~~~~~~--Iaa~ll~l---~~~E~dAFW~f~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~ 202 (294)
T 3qwl_A 131 DDEVFLA--IAKAMEEM---VEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKL 202 (294)
T ss_dssp HHHHHHH--HHHHHHHH---CCSHHHHHHHHHHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGS
T ss_pred chhhHHH--HHHHHHHH---hCCHHHHHHHHHHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchh
Confidence 4489984 67887643 248999999999999999999999999998775 799999999999999999998777
Q ss_pred hhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHH
Q 009812 413 FVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDE 492 (524)
Q Consensus 413 f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~de 492 (524)
|+.+||+|+|+++||+++++||||++|+++. .+++|+|+|+|..+|+.||+ +..+++
T Consensus 203 ~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~----------------------~~l~~valAiL~~~r~~Ll~-~~~~~~ 259 (294)
T 3qwl_A 203 PYDLWFKRCFAGCLPESSLQRVWDKVVSGSC----------------------KILVFVAVEILLTFKIKVMA-LNSAEK 259 (294)
T ss_dssp CHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS----------------------THHHHHHHHHHHHTHHHHHH-CCSHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhCCc----------------------hHHHHHHHHHHHHHHHHHhC-CCCHHH
Confidence 7779999999999999999999999999763 79999999999999999998 344599
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHhh
Q 009812 493 IMRECNSMAGHLDVWKLLDDAHDLVVTLH 521 (524)
Q Consensus 493 il~~ln~l~~~iDv~~lL~~A~~L~~~~~ 521 (524)
|+++|+++| ..|++.++..|..|+.+..
T Consensus 260 il~~Lq~lp-~~di~~ll~~A~~l~~~~~ 287 (294)
T 3qwl_A 260 ITKFLENIP-QDSSDAIVSKAIDLWHKHC 287 (294)
T ss_dssp HHHHHTTCC-STTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-cccHHHHHHHHHHHHHHcC
Confidence 999999998 6799999999999998764
No 8
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=40.78 E-value=63 Score=30.18 Aligned_cols=69 Identities=25% Similarity=0.371 Sum_probs=48.5
Q ss_pred HHHHhhhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhch
Q 009812 365 GFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQ 442 (524)
Q Consensus 365 ~Lm~~~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g 442 (524)
.+++.+...-......|+..+..++.-| .+|..++.+-+ |+|.+..--=.|.++++.++..|+.+|...
T Consensus 64 ef~~G~~~l~~dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y~-------ftF~~~re~gqk~L~~e~Ai~~W~lll~~~ 132 (199)
T 3kev_A 64 EFVEGLANLQVDSLEKLKRKLSSLRKEI--EDPSKFRAFYQ-------FVFQYSKEPSQRSLPAETAMALWDVLLRGR 132 (199)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHT--TSHHHHHHHHH-------HHHHHHSCTTCSSBCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHc--cCHHHHHHHHH-------HHHHHHcCcCcCCCCHHHHHHHHHHHhCCc
Confidence 3444443333445567777777777665 57877777664 888887655567899999999999999743
No 9
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=39.10 E-value=42 Score=31.96 Aligned_cols=56 Identities=18% Similarity=0.359 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHH--hccccCChhhHHHHHHHHHhc
Q 009812 377 DEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVV--LFRRELTFEQTLCLWEVIWAD 441 (524)
Q Consensus 377 ~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWflt--lF~refp~~~vlrlWD~~~a~ 441 (524)
....|+..+..|..-| .+|..++.+-+ |+|.+... -=.|.++++.++..|+.+|..
T Consensus 75 si~~lk~~l~~L~~~l--~d~~~Fk~~Y~-------ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~ 132 (221)
T 4gba_A 75 SIDGICARFPSLLTEA--KQEDKFKDLYR-------FTFQFGLDSEEGQRSLHREIAIALWKLVFTQ 132 (221)
T ss_dssp SHHHHHHHHHHHHHHT--TSHHHHHHHHH-------HHHHHHSCTTTTCSSEEHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHc--cCHHHHHHHHH-------HHHHHHhcCCccccCCCHHHHHHHHHHHcCC
Confidence 4456777777666666 67887777764 88887776 557889999999999999986
No 10
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=36.53 E-value=36 Score=31.89 Aligned_cols=58 Identities=12% Similarity=0.310 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhch
Q 009812 376 LDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQ 442 (524)
Q Consensus 376 ~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g 442 (524)
.....|+..+..+..-| .+|..++.+-+ |+|.+..--=.+.++++.++..|+.+|...
T Consensus 73 dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y~-------ftF~~~r~~gqk~L~~e~Ai~~W~lll~~~ 130 (200)
T 3tdu_A 73 DSIEKLKAQIPKMEQEL--KEPGRFKDFYQ-------FTFNFAKNPGQKGLDLEMAIAYWNLVLNGR 130 (200)
T ss_dssp SSHHHHHHTHHHHHHHT--TSHHHHHHHHH-------HHHHHHSCTTCSSEEHHHHHHHHHHHSTTS
T ss_pred ccHHHHHHHHHHHHHHc--cCHHHHHHHHH-------HHHHHHcCcCcCcCCHHHHHHHHHHHcCCC
Confidence 34556777777777666 37877777664 888887766667899999999999999754
No 11
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=24.70 E-value=47 Score=34.38 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=28.9
Q ss_pred cccchhHHHHHHHhcCCCCcc--hHHHHHHHHhCCCCCC
Q 009812 90 KLSEGGVKFLKKVRSGGVDPS--IRAEVWPFLLGVYDLK 126 (524)
Q Consensus 90 rl~~~~~~l~k~V~~gGi~p~--lR~evW~fLLG~y~~~ 126 (524)
++...++++|+.+..|-.+|+ .|+|||..|..+||.-
T Consensus 352 ~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~~~~~r 390 (395)
T 1r6x_A 352 TLNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPR 390 (395)
T ss_dssp CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTTC----
T ss_pred eEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHHhcCCh
Confidence 566677999999999888876 9999999999999864
No 12
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=22.46 E-value=1.4e+02 Score=29.12 Aligned_cols=69 Identities=6% Similarity=0.258 Sum_probs=47.5
Q ss_pred HHHHhhhhcCCCChHHHHHHHHHHHH-HHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhch
Q 009812 365 GFMKKARHNFRLDEVGIRRQLSIVSK-IIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQ 442 (524)
Q Consensus 365 ~Lm~~~~~~f~~~~~gi~~~l~~l~~-LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g 442 (524)
.+++.+...-.....+|+..+..|+. ++ .||..++.+-+ |+|.+..--=.+.++++.++.+|+.+|...
T Consensus 130 ef~~G~~~l~~dsi~~lk~~l~~l~~~~~--~d~~~Fk~~Y~-------f~F~~~r~~gqk~l~~d~Ai~~W~lll~~~ 199 (270)
T 3bq3_A 130 DFLSTWFMQGCSTISDMQECIKTLDVKLH--EDLQYFTQIYN-------YAFNLILDPNRKDIDTDEGIQYWKLFFQPE 199 (270)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHH--HCHHHHHHHHH-------HHHHHHCCTTCSEEEHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHc--cCHHHHHHHHH-------HHHHHhcCcCcCcCcHHHHHHHHHHHcCCc
Confidence 33443333323345567777766666 43 57888877764 888877766677899999999999999864
No 13
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.41 E-value=2.6e+02 Score=29.17 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchh
Q 009812 398 HLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQA 443 (524)
Q Consensus 398 ~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~ 443 (524)
++++.|.+.|+.|...+|.-++..|.+.=.++.++.||+.|...|.
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4677788889999999999999999988889999999999988763
Done!