Query 009814
Match_columns 524
No_of_seqs 404 out of 2683
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0504 PyrG CTP synthase (UTP 100.0 1E-203 2E-208 1578.6 45.5 501 1-523 1-504 (533)
2 PLN02327 CTP synthase 100.0 4E-201 9E-206 1601.3 48.3 522 1-523 1-524 (557)
3 KOG2387 CTP synthase (UTP-ammo 100.0 8E-201 2E-205 1529.8 42.1 523 1-523 1-525 (585)
4 TIGR00337 PyrG CTP synthase. C 100.0 4E-191 1E-195 1521.4 48.1 502 1-523 1-504 (525)
5 PRK05380 pyrG CTP synthetase; 100.0 4E-191 1E-195 1521.6 48.0 501 1-523 2-504 (533)
6 PF06418 CTP_synth_N: CTP synt 100.0 3E-142 6E-147 1051.2 17.2 276 1-284 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 2E-133 5E-138 981.5 23.1 255 2-262 1-255 (255)
8 PRK06186 hypothetical protein; 100.0 2.1E-55 4.5E-60 432.0 20.1 202 298-523 2-204 (229)
9 COG0505 CarA Carbamoylphosphat 100.0 1.3E-45 2.8E-50 376.5 15.1 254 202-523 67-340 (368)
10 cd01746 GATase1_CTP_Synthase T 100.0 1.7E-41 3.8E-46 336.3 20.7 214 298-523 1-216 (235)
11 TIGR01368 CPSaseIIsmall carbam 100.0 1.4E-37 3.1E-42 324.6 15.3 254 202-523 64-334 (358)
12 PRK12564 carbamoyl phosphate s 100.0 2.4E-37 5.2E-42 323.3 15.1 253 203-523 69-338 (360)
13 PLN02771 carbamoyl-phosphate s 100.0 9.3E-37 2E-41 321.7 14.3 253 202-523 120-400 (415)
14 PRK12838 carbamoyl phosphate s 100.0 6.6E-36 1.4E-40 311.8 16.7 251 203-523 67-328 (354)
15 CHL00197 carA carbamoyl-phosph 100.0 2.3E-34 5E-39 302.3 14.7 253 202-523 70-352 (382)
16 KOG0370 Multifunctional pyrimi 100.0 2.1E-30 4.5E-35 285.4 12.6 272 178-523 50-330 (1435)
17 COG0118 HisH Glutamine amidotr 99.8 5.1E-21 1.1E-25 183.8 11.5 160 298-506 2-177 (204)
18 cd01744 GATase1_CPSase Small c 99.8 1.3E-19 2.7E-24 172.4 16.6 158 300-523 1-159 (178)
19 PF00117 GATase: Glutamine ami 99.8 1.7E-19 3.7E-24 171.9 14.3 161 313-523 10-171 (192)
20 PRK08007 para-aminobenzoate sy 99.8 2.8E-19 6E-24 171.7 15.7 164 300-523 2-167 (187)
21 TIGR00566 trpG_papA glutamine 99.8 8.1E-19 1.8E-23 168.5 16.1 164 300-523 2-168 (188)
22 COG2071 Predicted glutamine am 99.8 4.5E-18 9.7E-23 167.4 17.7 139 358-523 56-215 (243)
23 PRK07765 para-aminobenzoate sy 99.8 6.6E-18 1.4E-22 165.6 16.3 169 299-523 2-171 (214)
24 COG0512 PabA Anthranilate/para 99.8 1E-17 2.2E-22 160.2 16.3 168 298-523 2-170 (191)
25 PRK06895 putative anthranilate 99.8 1.7E-17 3.6E-22 159.4 17.3 166 298-523 2-168 (190)
26 PRK07649 para-aminobenzoate/an 99.8 1.2E-17 2.5E-22 161.7 15.3 163 300-523 2-167 (195)
27 PLN02335 anthranilate synthase 99.8 1.5E-17 3.4E-22 163.9 16.4 173 296-523 17-192 (222)
28 PRK05670 anthranilate synthase 99.8 1.9E-17 4.1E-22 158.8 15.8 164 300-523 2-167 (189)
29 CHL00101 trpG anthranilate syn 99.7 2E-17 4.4E-22 159.0 15.1 164 300-523 2-168 (190)
30 PRK11366 puuD gamma-glutamyl-g 99.7 7.4E-17 1.6E-21 162.1 17.7 145 358-523 57-221 (254)
31 TIGR00888 guaA_Nterm GMP synth 99.7 6.6E-17 1.4E-21 154.7 16.3 161 300-523 1-163 (188)
32 PF07722 Peptidase_C26: Peptid 99.7 4E-17 8.8E-22 160.4 14.1 165 315-523 28-214 (217)
33 PRK06774 para-aminobenzoate sy 99.7 1E-16 2.2E-21 154.0 15.0 164 300-523 2-171 (191)
34 cd01743 GATase1_Anthranilate_S 99.7 2E-16 4.3E-21 150.8 16.0 164 301-523 2-166 (184)
35 PRK08857 para-aminobenzoate sy 99.7 2.6E-16 5.5E-21 151.7 15.7 165 300-523 2-172 (193)
36 cd01742 GATase1_GMP_Synthase T 99.7 4.8E-16 1E-20 147.2 16.1 163 300-523 1-163 (181)
37 TIGR01815 TrpE-clade3 anthrani 99.7 8.2E-16 1.8E-20 173.7 17.1 170 296-523 515-684 (717)
38 PRK13566 anthranilate synthase 99.7 1.5E-15 3.2E-20 171.9 16.6 170 296-523 525-694 (720)
39 TIGR01823 PabB-fungal aminodeo 99.6 1.5E-15 3.2E-20 172.7 16.2 173 296-523 4-182 (742)
40 PRK00758 GMP synthase subunit 99.6 3.8E-15 8.3E-20 142.1 15.9 158 300-523 2-160 (184)
41 PLN02347 GMP synthetase 99.6 8.6E-15 1.9E-19 161.0 17.6 163 299-523 12-181 (536)
42 PRK05637 anthranilate synthase 99.6 2.2E-14 4.8E-19 140.3 17.8 178 298-523 2-184 (208)
43 PRK14607 bifunctional glutamin 99.6 4.8E-15 1.1E-19 163.3 14.4 163 300-523 2-168 (534)
44 PRK13170 hisH imidazole glycer 99.6 1.9E-14 4.1E-19 139.3 16.5 172 298-523 1-177 (196)
45 CHL00188 hisH imidazole glycer 99.6 1.6E-14 3.4E-19 141.6 15.3 179 298-523 2-190 (210)
46 PRK14004 hisH imidazole glycer 99.6 7.8E-14 1.7E-18 136.7 16.2 178 300-523 2-190 (210)
47 cd01745 GATase1_2 Subgroup of 99.6 7E-14 1.5E-18 134.4 15.1 129 314-523 22-169 (189)
48 PRK13142 hisH imidazole glycer 99.5 3.1E-14 6.8E-19 137.7 11.5 106 300-447 2-118 (192)
49 PRK00074 guaA GMP synthase; Re 99.5 1E-13 2.2E-18 152.1 16.1 161 299-523 5-168 (511)
50 PRK13152 hisH imidazole glycer 99.5 3.8E-13 8.2E-18 130.5 17.0 169 300-523 2-182 (201)
51 PRK13146 hisH imidazole glycer 99.5 3.6E-13 7.8E-18 131.7 16.5 172 298-523 2-188 (209)
52 PRK03619 phosphoribosylformylg 99.5 2.6E-13 5.6E-18 133.7 13.9 174 298-523 1-194 (219)
53 PRK13141 hisH imidazole glycer 99.5 6.2E-13 1.3E-17 129.1 16.3 171 300-523 2-182 (205)
54 cd01747 GATase1_Glutamyl_Hydro 99.5 2.6E-13 5.7E-18 137.9 13.8 172 315-523 24-210 (273)
55 PRK09065 glutamine amidotransf 99.5 2.9E-13 6.4E-18 134.8 13.7 128 359-523 51-184 (237)
56 PLN02889 oxo-acid-lyase/anthra 99.5 9.2E-13 2E-17 151.4 17.4 99 297-416 81-187 (918)
57 cd01741 GATase1_1 Subgroup of 99.5 1.5E-12 3.2E-17 124.2 15.9 128 359-523 43-177 (188)
58 PRK13181 hisH imidazole glycer 99.5 1.2E-12 2.6E-17 126.6 15.2 81 300-408 2-89 (199)
59 PRK06490 glutamine amidotransf 99.4 5.1E-12 1.1E-16 126.2 18.2 166 297-523 7-177 (239)
60 PRK09522 bifunctional glutamin 99.4 8.1E-13 1.7E-17 145.5 13.4 165 298-523 2-169 (531)
61 cd01748 GATase1_IGP_Synthase T 99.4 2.6E-12 5.5E-17 124.0 14.7 170 300-523 1-181 (198)
62 PRK13143 hisH imidazole glycer 99.4 6.9E-12 1.5E-16 121.7 17.7 172 298-523 1-178 (200)
63 PLN02832 glutamine amidotransf 99.4 4.9E-12 1.1E-16 126.8 14.9 119 298-446 2-131 (248)
64 PRK07053 glutamine amidotransf 99.4 1.2E-11 2.6E-16 123.2 17.1 165 298-523 3-176 (234)
65 TIGR01737 FGAM_synth_I phospho 99.4 1.2E-11 2.7E-16 122.4 16.0 173 298-523 1-201 (227)
66 PRK07567 glutamine amidotransf 99.4 1.5E-11 3.3E-16 122.9 16.2 127 359-523 48-188 (242)
67 PRK01077 cobyrinic acid a,c-di 99.3 9.6E-11 2.1E-15 126.9 22.3 89 297-408 245-339 (451)
68 PLN02617 imidazole glycerol ph 99.3 1.4E-11 3.1E-16 135.6 15.7 173 297-523 6-190 (538)
69 KOG1224 Para-aminobenzoate (PA 99.3 1.2E-11 2.6E-16 132.2 13.5 177 296-523 13-196 (767)
70 TIGR01855 IMP_synth_hisH imida 99.3 3.6E-11 7.9E-16 116.3 14.0 81 300-408 1-88 (196)
71 PRK05665 amidotransferase; Pro 99.3 2E-10 4.4E-15 114.9 18.4 126 359-523 54-184 (240)
72 TIGR00379 cobB cobyrinic acid 99.3 7.1E-10 1.5E-14 120.2 22.6 89 297-408 244-338 (449)
73 PRK13527 glutamine amidotransf 99.2 2.3E-10 5E-15 110.9 16.0 76 314-411 17-97 (200)
74 PRK13525 glutamine amidotransf 99.2 2.1E-10 4.6E-15 110.6 14.8 86 298-411 2-92 (189)
75 COG0518 GuaA GMP synthase - Gl 99.2 1.7E-10 3.7E-15 112.3 14.1 163 299-523 3-173 (198)
76 KOG0026 Anthranilate synthase, 99.2 1.3E-10 2.9E-15 108.6 12.2 170 299-523 20-193 (223)
77 PRK00784 cobyric acid synthase 99.2 4.9E-10 1.1E-14 122.6 18.6 85 297-408 251-342 (488)
78 TIGR00313 cobQ cobyric acid sy 99.2 7.7E-10 1.7E-14 120.7 18.1 305 4-407 1-335 (475)
79 PRK08250 glutamine amidotransf 99.1 2.7E-09 5.8E-14 106.4 17.8 123 360-523 43-178 (235)
80 TIGR03800 PLP_synth_Pdx2 pyrid 99.1 1.3E-09 2.9E-14 104.7 14.9 81 300-408 2-87 (184)
81 PRK13896 cobyrinic acid a,c-di 99.0 3.2E-08 7E-13 106.8 21.3 288 1-405 1-322 (433)
82 KOG0623 Glutamine amidotransfe 99.0 2.4E-09 5.2E-14 109.8 11.7 150 300-499 4-165 (541)
83 PF00988 CPSase_sm_chain: Carb 99.0 4.1E-11 9E-16 108.9 -2.4 65 202-267 66-130 (131)
84 cd01740 GATase1_FGAR_AT Type 1 98.9 4.9E-08 1.1E-12 97.4 16.3 78 312-407 11-98 (238)
85 PRK13526 glutamine amidotransf 98.8 9.3E-09 2E-13 98.6 8.1 80 298-406 3-87 (179)
86 PRK01175 phosphoribosylformylg 98.7 5.2E-08 1.1E-12 98.8 10.1 90 297-406 3-104 (261)
87 cd01750 GATase1_CobQ Type 1 gl 98.7 3.4E-08 7.3E-13 95.6 7.5 83 300-408 1-89 (194)
88 cd01749 GATase1_PB Glutamine A 98.6 1.4E-07 3.1E-12 90.3 7.8 76 312-411 9-89 (183)
89 COG0047 PurL Phosphoribosylfor 98.5 4.4E-07 9.5E-12 89.4 10.2 84 297-405 2-95 (231)
90 cd03130 GATase1_CobB Type 1 gl 98.5 4.3E-07 9.2E-12 88.3 7.7 74 312-407 12-91 (198)
91 KOG1622 GMP synthase [Nucleoti 98.4 4.9E-07 1.1E-11 96.0 8.6 118 361-523 58-183 (552)
92 PRK05368 homoserine O-succinyl 98.4 1.6E-05 3.5E-10 82.3 17.8 129 361-523 98-234 (302)
93 PRK06278 cobyrinic acid a,c-di 98.4 7.5E-07 1.6E-11 97.3 7.9 76 299-407 2-81 (476)
94 KOG3179 Predicted glutamine sy 98.1 1.5E-05 3.4E-10 77.3 9.3 55 358-412 55-114 (245)
95 PF13507 GATase_5: CobB/CobQ-l 98.1 8.3E-06 1.8E-10 82.8 7.2 88 298-405 2-104 (259)
96 cd01653 GATase1 Type 1 glutami 98.0 4.6E-05 9.9E-10 62.6 8.8 76 312-404 13-92 (115)
97 PRK05297 phosphoribosylformylg 97.9 0.00035 7.6E-09 84.8 19.1 90 296-405 1034-1138(1290)
98 cd03144 GATase1_ScBLP_like Typ 97.9 1.3E-05 2.8E-10 71.8 5.1 78 306-404 8-90 (114)
99 COG0311 PDX2 Predicted glutami 97.9 2.8E-05 6.1E-10 74.6 7.6 82 298-407 1-88 (194)
100 TIGR01857 FGAM-synthase phosph 97.9 0.0003 6.5E-09 84.4 17.5 96 296-405 976-1088(1239)
101 cd03146 GAT1_Peptidase_E Type 97.8 4.9E-05 1.1E-09 74.6 7.3 92 296-405 30-128 (212)
102 PLN03206 phosphoribosylformylg 97.8 0.00098 2.1E-08 80.7 19.0 90 296-405 1036-1140(1307)
103 PF07685 GATase_3: CobB/CobQ-l 97.7 3.5E-05 7.6E-10 72.3 4.6 50 359-408 4-59 (158)
104 COG1797 CobB Cobyrinic acid a, 97.7 0.006 1.3E-07 65.9 21.0 85 298-405 246-337 (451)
105 TIGR01735 FGAM_synt phosphorib 97.6 0.0021 4.5E-08 78.3 18.7 90 296-405 1054-1158(1310)
106 PF01174 SNO: SNO glutamine am 97.6 9.5E-05 2.1E-09 71.4 5.9 73 309-405 4-82 (188)
107 cd03128 GAT_1 Type 1 glutamine 97.6 0.00024 5.3E-09 55.7 6.7 75 313-404 14-92 (92)
108 PHA03366 FGAM-synthase; Provis 96.7 0.0058 1.3E-07 74.5 9.8 91 294-405 1025-1131(1304)
109 cd03131 GATase1_HTS Type 1 glu 96.6 0.0018 3.9E-08 62.2 4.0 53 360-412 60-119 (175)
110 PRK11780 isoprenoid biosynthes 96.5 0.0049 1.1E-07 61.1 6.2 49 360-408 83-145 (217)
111 cd03133 GATase1_ES1 Type 1 glu 96.5 0.0054 1.2E-07 60.7 6.1 56 360-415 80-151 (213)
112 PRK05282 (alpha)-aspartyl dipe 96.4 0.011 2.4E-07 59.3 7.8 104 280-406 16-128 (233)
113 cd03169 GATase1_PfpI_1 Type 1 96.3 0.0056 1.2E-07 58.0 5.2 45 362-406 76-123 (180)
114 TIGR01739 tegu_FGAM_synt herpe 96.3 0.016 3.5E-07 70.3 10.1 89 296-405 928-1032(1202)
115 KOG3210 Imidazoleglycerol-phos 96.3 0.017 3.8E-07 55.0 7.9 86 298-405 12-105 (226)
116 TIGR01382 PfpI intracellular p 96.3 0.0061 1.3E-07 56.6 5.0 44 362-405 60-106 (166)
117 KOG1559 Gamma-glutamyl hydrola 96.2 0.014 3E-07 58.6 7.3 147 358-523 107-266 (340)
118 cd03134 GATase1_PfpI_like A ty 95.7 0.018 3.9E-07 53.4 5.2 45 361-405 61-108 (165)
119 cd02037 MRP-like MRP (Multiple 95.5 0.077 1.7E-06 49.6 9.1 129 7-220 4-132 (169)
120 PRK00090 bioD dithiobiotin syn 95.5 0.029 6.2E-07 54.8 6.4 167 4-221 2-174 (222)
121 PRK12374 putative dithiobiotin 95.5 0.06 1.3E-06 53.4 8.6 169 1-221 2-176 (231)
122 COG1492 CobQ Cobyric acid synt 95.4 0.023 5E-07 62.3 5.7 54 1-67 1-54 (486)
123 cd03132 GATase1_catalase Type 95.2 0.087 1.9E-06 47.8 8.2 99 299-405 3-109 (142)
124 PRK13768 GTPase; Provisional 94.9 0.17 3.7E-06 51.1 10.0 39 2-42 3-41 (253)
125 cd03147 GATase1_Ydr533c_like T 94.8 0.045 9.8E-07 54.8 5.4 48 360-407 92-143 (231)
126 COG0693 ThiJ Putative intracel 94.7 0.045 9.8E-07 52.1 5.1 45 361-405 65-113 (188)
127 cd01983 Fer4_NifH The Fer4_Nif 94.5 0.1 2.2E-06 42.6 5.9 33 4-38 2-34 (99)
128 PF01965 DJ-1_PfpI: DJ-1/PfpI 94.3 0.033 7.3E-07 51.1 2.9 46 360-405 35-85 (147)
129 cd03140 GATase1_PfpI_3 Type 1 94.3 0.082 1.8E-06 49.7 5.6 46 361-406 59-106 (170)
130 PRK04155 chaperone protein Hch 94.2 0.07 1.5E-06 55.2 5.4 46 360-405 145-194 (287)
131 PRK09435 membrane ATPase/prote 94.0 0.32 7E-06 51.4 9.9 63 3-67 58-128 (332)
132 cd03137 GATase1_AraC_1 AraC tr 94.0 0.12 2.5E-06 49.0 6.1 48 359-406 61-111 (187)
133 cd03141 GATase1_Hsp31_like Typ 93.6 0.097 2.1E-06 51.8 4.9 47 360-406 88-138 (221)
134 cd03148 GATase1_EcHsp31_like T 93.6 0.12 2.6E-06 51.7 5.5 45 361-405 95-143 (232)
135 cd03135 GATase1_DJ-1 Type 1 gl 93.4 0.12 2.6E-06 47.4 4.9 46 361-406 59-108 (163)
136 PRK05632 phosphate acetyltrans 93.2 0.62 1.3E-05 53.7 11.3 37 1-38 2-38 (684)
137 cd03129 GAT1_Peptidase_E_like 93.2 0.62 1.4E-05 45.4 9.8 105 283-405 17-128 (210)
138 PF04204 HTS: Homoserine O-suc 93.1 1.6 3.6E-05 45.4 13.1 130 357-522 91-232 (298)
139 PRK14974 cell division protein 93.1 1.5 3.2E-05 46.5 13.0 39 2-42 141-179 (336)
140 TIGR01968 minD_bact septum sit 92.9 2.1 4.5E-05 42.2 13.2 40 2-42 2-41 (261)
141 PRK11574 oxidative-stress-resi 92.9 0.2 4.3E-06 48.1 5.7 45 361-405 65-113 (196)
142 cd03138 GATase1_AraC_2 AraC tr 92.9 0.19 4.1E-06 47.9 5.6 46 360-405 67-118 (195)
143 COG3442 Predicted glutamine am 92.9 0.089 1.9E-06 52.3 3.2 46 361-406 51-102 (250)
144 cd00550 ArsA_ATPase Oxyanion-t 92.5 0.5 1.1E-05 47.7 8.2 39 2-42 1-39 (254)
145 PRK10867 signal recognition pa 92.4 2 4.3E-05 47.1 13.2 39 2-42 101-140 (433)
146 TIGR00750 lao LAO/AO transport 92.2 0.87 1.9E-05 47.1 9.8 43 1-45 34-76 (300)
147 TIGR01383 not_thiJ DJ-1 family 92.1 0.23 5E-06 46.5 5.0 47 360-406 61-111 (179)
148 TIGR00064 ftsY signal recognit 91.9 3.2 7E-05 42.5 13.5 39 2-42 73-111 (272)
149 cd03136 GATase1_AraC_ArgR_like 91.9 0.33 7.1E-06 46.0 5.8 46 360-405 62-109 (185)
150 cd03139 GATase1_PfpI_2 Type 1 91.7 0.22 4.9E-06 46.7 4.4 46 360-405 60-108 (183)
151 TIGR03371 cellulose_yhjQ cellu 91.2 1.1 2.5E-05 43.8 9.0 41 1-42 1-41 (246)
152 PHA02518 ParA-like protein; Pr 91.1 0.84 1.8E-05 43.5 7.7 33 11-43 9-41 (211)
153 TIGR01969 minD_arch cell divis 91.0 1.3 2.7E-05 43.5 9.1 34 9-42 7-40 (251)
154 PF13278 DUF4066: Putative ami 90.9 0.34 7.5E-06 45.0 4.7 46 360-405 59-107 (166)
155 cd03114 ArgK-like The function 90.6 1.6 3.4E-05 40.5 8.8 38 4-43 2-39 (148)
156 TIGR01001 metA homoserine O-su 90.4 11 0.00024 39.4 15.4 45 361-405 98-149 (300)
157 PF09825 BPL_N: Biotin-protein 90.4 0.87 1.9E-05 48.8 7.7 45 361-405 48-96 (367)
158 PRK11249 katE hydroperoxidase 90.3 0.91 2E-05 52.8 8.3 101 297-405 597-705 (752)
159 cd03115 SRP The signal recogni 89.3 6.5 0.00014 36.6 12.0 37 4-42 3-39 (173)
160 PRK10818 cell division inhibit 88.9 4 8.7E-05 40.9 10.9 40 2-42 3-42 (270)
161 TIGR00347 bioD dethiobiotin sy 88.8 2.6 5.7E-05 39.0 8.9 154 10-216 5-165 (166)
162 PRK11889 flhF flagellar biosyn 88.0 6.4 0.00014 43.1 12.1 144 2-217 242-385 (436)
163 PRK09393 ftrA transcriptional 87.9 0.93 2E-05 46.9 5.7 47 359-405 72-120 (322)
164 TIGR00959 ffh signal recogniti 87.8 4.2 9E-05 44.6 10.8 141 3-217 101-247 (428)
165 PRK13849 putative crown gall t 87.0 7.7 0.00017 38.7 11.5 43 1-44 1-43 (231)
166 PRK14494 putative molybdopteri 86.7 1.2 2.7E-05 44.6 5.6 37 1-39 1-37 (229)
167 COG0132 BioD Dethiobiotin synt 86.3 4.6 9.9E-05 40.5 9.3 183 1-230 2-186 (223)
168 TIGR03499 FlhF flagellar biosy 86.2 1.2 2.5E-05 45.8 5.3 40 2-43 195-236 (282)
169 cd02042 ParA ParA and ParB of 86.2 2.9 6.2E-05 35.5 6.9 36 7-42 4-39 (104)
170 TIGR02069 cyanophycinase cyano 85.8 4.3 9.2E-05 41.2 9.0 107 283-405 16-130 (250)
171 PF13500 AAA_26: AAA domain; P 85.8 1.9 4.1E-05 41.3 6.2 165 2-219 1-168 (199)
172 PRK14493 putative bifunctional 84.6 2.2 4.7E-05 44.0 6.3 39 1-42 1-39 (274)
173 CHL00072 chlL photochlorophyll 84.4 1.6 3.5E-05 44.9 5.4 43 1-46 1-43 (290)
174 cd03116 MobB Molybdenum is an 83.4 3 6.6E-05 39.3 6.3 40 1-42 1-40 (159)
175 cd02035 ArsA ArsA ATPase funct 83.2 7.3 0.00016 38.1 9.2 39 4-44 2-40 (217)
176 COG2894 MinD Septum formation 82.9 1.8 3.9E-05 43.6 4.7 39 1-40 2-40 (272)
177 PRK13232 nifH nitrogenase redu 82.6 2.1 4.5E-05 43.3 5.2 43 1-45 1-43 (273)
178 cd02029 PRK_like Phosphoribulo 82.1 2.2 4.7E-05 44.1 5.1 43 4-48 2-44 (277)
179 cd02040 NifH NifH gene encodes 81.5 2.7 5.9E-05 41.8 5.5 44 1-46 1-44 (270)
180 COG0003 ArsA Predicted ATPase 81.5 2.6 5.6E-05 44.5 5.5 49 1-51 2-50 (322)
181 PRK13230 nitrogenase reductase 81.3 2.9 6.2E-05 42.4 5.7 45 1-47 1-45 (279)
182 cd03109 DTBS Dethiobiotin synt 79.3 4.8 0.0001 36.5 5.9 36 4-42 3-38 (134)
183 PF02374 ArsA_ATPase: Anion-tr 79.3 2.8 6E-05 43.7 4.9 42 1-44 1-42 (305)
184 KOG2764 Putative transcription 79.2 3 6.4E-05 42.0 4.8 45 361-405 66-114 (247)
185 cd03145 GAT1_cyanophycinase Ty 78.7 10 0.00022 37.4 8.5 108 283-405 17-131 (217)
186 TIGR00176 mobB molybdopterin-g 78.5 3.7 8E-05 38.5 5.0 35 4-40 2-36 (155)
187 PF01656 CbiA: CobQ/CobB/MinD/ 77.9 3.4 7.4E-05 38.6 4.6 36 10-45 6-41 (195)
188 TIGR01425 SRP54_euk signal rec 77.7 3.5 7.6E-05 45.2 5.2 40 2-43 101-140 (429)
189 PRK12724 flagellar biosynthesi 76.5 3.9 8.5E-05 44.8 5.2 41 2-44 224-265 (432)
190 cd02028 UMPK_like Uridine mono 75.7 5.4 0.00012 38.0 5.4 41 4-46 2-42 (179)
191 cd02033 BchX Chlorophyllide re 75.7 4.9 0.00011 42.5 5.5 42 1-44 31-72 (329)
192 TIGR01007 eps_fam capsular exo 75.5 5.6 0.00012 38.1 5.5 42 1-43 17-58 (204)
193 CHL00175 minD septum-site dete 74.7 6 0.00013 40.0 5.7 45 2-47 16-61 (281)
194 cd02034 CooC The accessory pro 74.6 6 0.00013 35.3 5.0 36 4-41 2-37 (116)
195 PRK07667 uridine kinase; Provi 74.6 6.2 0.00013 37.9 5.5 40 3-44 19-58 (193)
196 PLN02929 NADH kinase 74.5 5.6 0.00012 41.6 5.5 65 309-400 32-96 (301)
197 PRK01911 ppnK inorganic polyph 74.5 10 0.00023 39.4 7.5 36 361-401 63-98 (292)
198 PRK13233 nifH nitrogenase redu 74.4 5.5 0.00012 40.1 5.4 43 1-45 2-45 (275)
199 PRK10416 signal recognition pa 73.5 6.1 0.00013 41.5 5.6 39 2-42 115-153 (318)
200 PRK03372 ppnK inorganic polyph 72.9 11 0.00025 39.4 7.4 95 298-401 6-106 (306)
201 PF06564 YhjQ: YhjQ protein; 71.2 7.2 0.00016 39.6 5.3 46 1-47 1-52 (243)
202 PRK13185 chlL protochlorophyll 71.1 8.2 0.00018 38.7 5.7 42 2-45 3-44 (270)
203 TIGR03018 pepcterm_TyrKin exop 71.1 9.1 0.0002 37.1 5.8 42 1-43 35-77 (207)
204 PRK13235 nifH nitrogenase redu 71.0 7.5 0.00016 39.2 5.4 43 1-45 1-43 (274)
205 PRK10037 cell division protein 70.8 6.7 0.00014 39.1 5.0 41 1-42 1-41 (250)
206 PRK12726 flagellar biosynthesi 70.5 7.5 0.00016 42.3 5.5 39 2-42 207-245 (407)
207 cd01672 TMPK Thymidine monopho 70.4 7.6 0.00016 36.2 5.0 36 2-39 1-36 (200)
208 cd02036 MinD Bacterial cell di 69.7 6.8 0.00015 36.0 4.4 34 9-42 6-39 (179)
209 PRK13236 nitrogenase reductase 69.6 8.2 0.00018 39.8 5.4 42 2-45 7-48 (296)
210 PRK13234 nifH nitrogenase redu 68.9 9.4 0.0002 39.3 5.7 43 1-45 4-46 (295)
211 KOG2825 Putative arsenite-tran 68.4 5.6 0.00012 40.9 3.7 43 2-46 20-62 (323)
212 PF03575 Peptidase_S51: Peptid 68.3 5.4 0.00012 37.0 3.5 73 315-403 4-81 (154)
213 PRK05703 flhF flagellar biosyn 67.7 8 0.00017 42.3 5.1 39 2-42 222-262 (424)
214 PRK10751 molybdopterin-guanine 66.9 12 0.00026 36.0 5.6 38 2-41 7-44 (173)
215 COG4285 Uncharacterized conser 66.8 11 0.00024 37.8 5.4 80 306-401 6-92 (253)
216 cd02117 NifH_like This family 66.5 11 0.00023 36.6 5.3 42 3-46 2-43 (212)
217 PRK02649 ppnK inorganic polyph 66.5 17 0.00038 38.0 7.1 35 361-400 67-101 (305)
218 cd02032 Bchl_like This family 66.4 13 0.00028 37.3 6.0 40 4-45 3-42 (267)
219 cd01830 XynE_like SGNH_hydrola 66.2 19 0.00041 34.4 6.8 86 92-185 21-130 (204)
220 PRK13231 nitrogenase reductase 65.3 6.9 0.00015 39.1 3.8 42 1-45 2-43 (264)
221 PRK04539 ppnK inorganic polyph 65.2 24 0.00052 36.8 7.8 94 298-401 6-102 (296)
222 PRK13869 plasmid-partitioning 64.8 9.6 0.00021 41.3 5.0 43 2-45 122-164 (405)
223 PRK02155 ppnK NAD(+)/NADH kina 64.7 22 0.00049 36.9 7.5 90 298-401 6-97 (291)
224 PRK14077 pnk inorganic polypho 64.0 15 0.00034 38.0 6.1 85 298-401 11-98 (287)
225 PF02572 CobA_CobO_BtuR: ATP:c 64.0 6 0.00013 38.1 2.9 29 11-39 9-39 (172)
226 PRK14076 pnk inorganic polypho 63.1 26 0.00056 39.8 8.2 92 296-401 289-382 (569)
227 PRK00771 signal recognition pa 62.7 12 0.00027 41.1 5.4 39 2-42 96-134 (437)
228 COG4126 Hydantoin racemase [Am 61.7 11 0.00024 37.8 4.4 45 361-412 68-112 (230)
229 TIGR01287 nifH nitrogenase iro 61.5 14 0.00031 37.1 5.3 41 3-45 2-42 (275)
230 PRK11670 antiporter inner memb 61.3 14 0.00031 39.5 5.5 44 2-46 108-151 (369)
231 KOG1907 Phosphoribosylformylgl 61.2 18 0.00038 43.0 6.3 89 297-406 1058-1162(1320)
232 PRK06731 flhF flagellar biosyn 61.2 1.8E+02 0.004 29.9 13.3 141 3-217 77-219 (270)
233 TIGR02016 BchX chlorophyllide 60.6 15 0.00032 38.1 5.3 41 2-44 1-41 (296)
234 PRK06696 uridine kinase; Valid 60.2 19 0.00041 35.3 5.8 41 3-45 24-64 (223)
235 TIGR01281 DPOR_bchL light-inde 59.9 18 0.00038 36.3 5.6 35 11-45 8-42 (268)
236 PF00142 Fer4_NifH: 4Fe-4S iro 59.7 11 0.00024 38.9 4.1 32 12-43 9-40 (273)
237 PRK03378 ppnK inorganic polyph 59.6 31 0.00068 35.9 7.5 90 298-401 6-97 (292)
238 PRK07414 cob(I)yrinic acid a,c 58.6 8.8 0.00019 37.2 3.0 28 12-39 28-57 (178)
239 COG0521 MoaB Molybdopterin bio 57.4 50 0.0011 31.8 7.9 73 89-173 27-115 (169)
240 COG1192 Soj ATPases involved i 56.8 17 0.00037 36.1 4.9 36 9-44 9-45 (259)
241 PRK14489 putative bifunctional 55.9 20 0.00044 38.2 5.5 39 1-41 205-243 (366)
242 PRK01184 hypothetical protein; 55.2 15 0.00032 34.6 3.9 28 1-34 1-28 (184)
243 PLN02727 NAD kinase 55.2 32 0.00069 41.3 7.2 96 297-401 678-777 (986)
244 PF00485 PRK: Phosphoribulokin 55.2 16 0.00034 35.0 4.1 38 4-43 2-43 (194)
245 cd03110 Fer4_NifH_child This p 55.0 92 0.002 28.9 9.3 29 11-43 8-36 (179)
246 TIGR01012 Sa_S2_E_A ribosomal 54.1 81 0.0018 31.1 8.9 76 299-398 63-138 (196)
247 PRK14495 putative molybdopteri 53.0 21 0.00046 39.4 5.1 39 1-41 1-39 (452)
248 cd06300 PBP1_ABC_sugar_binding 52.9 83 0.0018 30.6 9.0 33 361-397 59-91 (272)
249 PF13614 AAA_31: AAA domain; P 52.9 30 0.00065 31.2 5.4 40 2-42 1-40 (157)
250 PF00448 SRP54: SRP54-type pro 52.5 28 0.00062 33.8 5.5 40 2-43 2-41 (196)
251 PRK13886 conjugal transfer pro 51.8 26 0.00056 35.6 5.2 39 4-42 4-42 (241)
252 PRK14075 pnk inorganic polypho 51.3 41 0.0009 34.2 6.7 71 299-401 2-72 (256)
253 PF01583 APS_kinase: Adenylyls 51.3 24 0.00052 33.4 4.6 36 3-40 4-39 (156)
254 PF06283 ThuA: Trehalose utili 50.7 38 0.00081 33.0 6.1 43 358-400 48-90 (217)
255 PRK15453 phosphoribulokinase; 50.7 21 0.00045 37.3 4.4 48 2-51 6-53 (290)
256 COG1214 Inactive homolog of me 50.6 20 0.00043 35.7 4.1 39 361-399 57-97 (220)
257 COG1703 ArgK Putative periplas 50.2 20 0.00042 37.8 4.1 96 4-152 54-153 (323)
258 PRK06179 short chain dehydroge 49.7 19 0.00041 35.5 3.8 34 2-41 5-38 (270)
259 PF03205 MobB: Molybdopterin g 49.5 30 0.00065 31.8 4.9 37 2-40 1-37 (140)
260 cd01425 RPS2 Ribosomal protein 49.2 1.6E+02 0.0035 28.5 10.2 32 361-398 126-157 (193)
261 PRK04761 ppnK inorganic polyph 49.0 16 0.00036 37.1 3.3 37 360-401 23-59 (246)
262 PRK06953 short chain dehydroge 49.0 23 0.0005 33.9 4.2 34 1-40 1-34 (222)
263 COG0052 RpsB Ribosomal protein 48.8 1.4E+02 0.003 30.7 9.7 30 363-398 157-186 (252)
264 PRK03708 ppnK inorganic polyph 48.7 41 0.00088 34.7 6.2 87 298-401 1-90 (277)
265 cd02038 FleN-like FleN is a me 48.5 37 0.00081 30.7 5.3 38 4-42 2-39 (139)
266 PRK05693 short chain dehydroge 47.8 21 0.00044 35.5 3.8 32 1-38 1-32 (274)
267 COG2109 BtuR ATP:corrinoid ade 47.7 17 0.00038 35.7 3.1 30 10-39 33-64 (198)
268 TIGR01133 murG undecaprenyldip 47.7 27 0.00059 35.5 4.7 34 1-38 1-35 (348)
269 PHA02519 plasmid partition pro 47.4 19 0.00042 38.8 3.7 34 13-46 117-151 (387)
270 PRK12723 flagellar biosynthesi 47.4 31 0.00066 37.4 5.2 39 2-42 175-217 (388)
271 TIGR00041 DTMP_kinase thymidyl 47.2 36 0.00077 32.1 5.2 34 2-37 4-37 (195)
272 PRK07102 short chain dehydroge 47.1 21 0.00045 34.7 3.6 35 1-41 1-35 (243)
273 PRK02006 murD UDP-N-acetylmura 47.0 30 0.00064 38.2 5.2 31 2-36 122-152 (498)
274 COG3340 PepE Peptidase E [Amin 47.0 42 0.0009 33.7 5.6 92 297-405 32-132 (224)
275 PRK00561 ppnK inorganic polyph 45.8 20 0.00043 36.8 3.3 36 361-401 32-67 (259)
276 TIGR03029 EpsG chain length de 45.3 35 0.00076 34.3 5.0 40 2-42 104-143 (274)
277 PF01513 NAD_kinase: ATP-NAD k 44.9 27 0.00059 35.8 4.3 37 360-401 74-110 (285)
278 PTZ00254 40S ribosomal protein 44.8 1.3E+02 0.0028 30.9 8.9 86 286-398 63-148 (249)
279 PF14403 CP_ATPgrasp_2: Circul 44.7 1.3E+02 0.0029 33.3 9.7 158 207-399 100-276 (445)
280 COG0529 CysC Adenylylsulfate k 44.4 36 0.00077 33.5 4.6 33 3-37 25-57 (197)
281 PRK06940 short chain dehydroge 44.3 31 0.00067 34.6 4.5 31 2-40 3-33 (275)
282 COG1348 NifH Nitrogenase subun 44.0 21 0.00045 36.5 3.1 30 13-42 11-40 (278)
283 PF02424 ApbE: ApbE family; I 43.9 18 0.0004 36.5 2.8 90 11-112 110-213 (254)
284 PF09140 MipZ: ATPase MipZ; I 43.8 34 0.00073 35.2 4.6 40 3-42 1-40 (261)
285 PRK07890 short chain dehydroge 43.7 28 0.00061 33.8 4.0 32 2-39 6-37 (258)
286 PRK05854 short chain dehydroge 43.2 24 0.00053 36.2 3.6 30 2-37 15-44 (313)
287 COG1763 MobB Molybdopterin-gua 43.1 65 0.0014 30.7 6.1 55 1-57 2-57 (161)
288 PRK06101 short chain dehydroge 42.9 27 0.00059 33.9 3.7 33 1-39 1-33 (240)
289 TIGR03815 CpaE_hom_Actino heli 42.8 47 0.001 34.4 5.7 42 2-44 94-135 (322)
290 PRK01231 ppnK inorganic polyph 42.4 77 0.0017 33.0 7.1 89 299-401 6-96 (295)
291 PRK04020 rps2P 30S ribosomal p 42.4 94 0.002 30.8 7.3 76 299-398 69-144 (204)
292 PRK09221 beta alanine--pyruvat 42.3 93 0.002 34.1 8.1 37 139-178 218-256 (445)
293 PRK06947 glucose-1-dehydrogena 42.0 30 0.00066 33.4 3.9 30 1-36 2-31 (248)
294 PRK06851 hypothetical protein; 41.9 44 0.00095 36.0 5.3 38 2-41 31-70 (367)
295 PRK06924 short chain dehydroge 41.7 40 0.00086 32.7 4.7 31 1-37 1-31 (251)
296 PRK05439 pantothenate kinase; 41.6 43 0.00092 35.3 5.1 41 3-45 88-130 (311)
297 PRK08177 short chain dehydroge 41.4 40 0.00087 32.3 4.6 34 1-40 1-34 (225)
298 COG0061 nadF NAD kinase [Coenz 41.1 57 0.0012 33.6 5.9 35 361-400 54-88 (281)
299 PRK06398 aldose dehydrogenase; 41.0 29 0.00063 34.2 3.7 30 2-37 7-36 (258)
300 PRK12742 oxidoreductase; Provi 41.0 32 0.00068 33.0 3.8 29 2-36 7-35 (237)
301 PRK03846 adenylylsulfate kinas 41.0 43 0.00094 32.1 4.8 40 2-43 25-64 (198)
302 PRK07933 thymidylate kinase; V 40.9 50 0.0011 32.4 5.2 37 2-40 1-37 (213)
303 PF08245 Mur_ligase_M: Mur lig 40.2 75 0.0016 29.7 6.1 26 13-38 4-29 (188)
304 cd01836 FeeA_FeeB_like SGNH_hy 40.1 60 0.0013 30.2 5.5 60 118-184 53-116 (191)
305 PRK04148 hypothetical protein; 40.0 32 0.00069 31.9 3.4 108 13-178 24-131 (134)
306 PRK08303 short chain dehydroge 39.8 30 0.00064 35.6 3.6 30 2-37 9-38 (305)
307 PRK08727 hypothetical protein; 39.8 21 0.00045 35.4 2.4 59 3-63 43-101 (233)
308 PF13472 Lipase_GDSL_2: GDSL-l 39.7 41 0.00088 29.8 4.1 91 87-188 12-115 (179)
309 cd05013 SIS_RpiR RpiR-like pro 39.4 2.5E+02 0.0054 24.1 11.1 38 360-399 58-95 (139)
310 PRK12481 2-deoxy-D-gluconate 3 39.2 31 0.00068 33.9 3.5 30 2-37 9-38 (251)
311 KOG2708 Predicted metalloprote 38.8 77 0.0017 32.4 6.1 50 361-414 69-122 (336)
312 PRK14528 adenylate kinase; Pro 38.8 41 0.00089 32.1 4.2 25 1-27 1-25 (186)
313 PRK12748 3-ketoacyl-(acyl-carr 38.7 36 0.00079 33.3 3.9 32 2-38 6-38 (256)
314 PRK07035 short chain dehydroge 38.7 34 0.00073 33.3 3.7 30 2-37 9-38 (252)
315 COG4090 Uncharacterized protei 38.6 36 0.00078 31.7 3.5 41 359-399 82-124 (154)
316 PRK04296 thymidine kinase; Pro 38.6 71 0.0015 30.6 5.8 38 2-45 3-42 (190)
317 cd02023 UMPK Uridine monophosp 38.3 51 0.0011 31.3 4.7 37 4-44 2-38 (198)
318 cd01391 Periplasmic_Binding_Pr 37.8 1.8E+02 0.0039 26.9 8.4 32 361-397 57-88 (269)
319 PLN02422 dephospho-CoA kinase 37.7 41 0.00089 33.9 4.1 28 1-34 1-28 (232)
320 PRK09072 short chain dehydroge 37.7 37 0.00079 33.4 3.8 33 2-40 6-38 (263)
321 PRK12829 short chain dehydroge 37.6 39 0.00085 32.8 3.9 33 2-40 12-44 (264)
322 cd03794 GT1_wbuB_like This fam 37.5 4.1E+02 0.0088 26.1 17.5 42 2-43 1-43 (394)
323 PRK12828 short chain dehydroge 37.3 43 0.00093 31.8 4.1 34 2-41 8-41 (239)
324 COG3155 ElbB Uncharacterized p 37.0 50 0.0011 31.9 4.2 51 361-411 84-148 (217)
325 PRK03333 coaE dephospho-CoA ki 36.9 36 0.00077 36.8 3.8 28 1-34 1-28 (395)
326 PRK12311 rpsB 30S ribosomal pr 36.8 2E+02 0.0044 30.6 9.2 31 362-398 152-182 (326)
327 cd03111 CpaE_like This protein 36.8 48 0.001 28.6 3.9 33 11-43 8-41 (106)
328 TIGR03453 partition_RepA plasm 36.7 49 0.0011 35.4 4.8 36 9-44 111-146 (387)
329 KOG1252 Cystathionine beta-syn 36.5 21 0.00046 38.0 1.9 43 10-52 216-260 (362)
330 PRK03501 ppnK inorganic polyph 36.4 96 0.0021 31.9 6.6 34 362-400 39-74 (264)
331 COG4977 Transcriptional regula 36.4 48 0.001 35.2 4.5 46 360-405 74-122 (328)
332 TIGR00455 apsK adenylylsulfate 36.3 63 0.0014 30.3 5.0 35 2-38 19-53 (184)
333 PRK11519 tyrosine kinase; Prov 36.0 59 0.0013 37.9 5.6 40 2-42 527-566 (719)
334 TIGR01500 sepiapter_red sepiap 36.0 45 0.00098 32.7 4.1 34 3-38 2-35 (256)
335 PF09419 PGP_phosphatase: Mito 35.9 77 0.0017 30.5 5.5 70 320-395 36-110 (168)
336 PRK05480 uridine/cytidine kina 35.9 67 0.0014 30.9 5.2 38 2-43 7-44 (209)
337 TIGR01499 folC folylpolyglutam 35.7 48 0.001 35.4 4.5 33 2-38 19-51 (397)
338 PRK08416 7-alpha-hydroxysteroi 35.5 39 0.00084 33.3 3.5 29 2-36 9-37 (260)
339 PRK08703 short chain dehydroge 35.3 44 0.00096 32.2 3.9 30 2-37 7-36 (239)
340 PRK13973 thymidylate kinase; P 35.3 75 0.0016 30.9 5.5 35 2-38 4-38 (213)
341 PRK05786 fabG 3-ketoacyl-(acyl 35.3 43 0.00093 32.1 3.8 29 2-36 6-34 (238)
342 PF12846 AAA_10: AAA-like doma 35.3 60 0.0013 32.1 4.9 35 3-41 3-37 (304)
343 PRK02231 ppnK inorganic polyph 35.3 40 0.00086 34.8 3.6 35 361-400 41-75 (272)
344 COG0771 MurD UDP-N-acetylmuram 35.2 1.8E+02 0.0039 32.3 8.9 83 297-396 7-98 (448)
345 TIGR03325 BphB_TodD cis-2,3-di 35.1 43 0.00092 33.0 3.8 30 2-37 6-35 (262)
346 cd06305 PBP1_methylthioribose_ 35.1 3E+02 0.0066 26.5 9.8 33 361-397 54-86 (273)
347 PF10087 DUF2325: Uncharacteri 35.0 2.4E+02 0.0051 24.0 7.9 79 299-396 1-80 (97)
348 PRK06197 short chain dehydroge 35.0 39 0.00085 34.2 3.6 30 2-37 17-46 (306)
349 COG0489 Mrp ATPases involved i 34.9 62 0.0013 33.0 4.9 162 2-217 58-227 (265)
350 PRK08339 short chain dehydroge 34.8 43 0.00093 33.2 3.8 30 2-37 9-38 (263)
351 PRK12727 flagellar biosynthesi 34.6 58 0.0012 37.0 5.0 39 2-42 351-391 (559)
352 PRK05876 short chain dehydroge 34.5 44 0.00095 33.5 3.8 30 2-37 7-36 (275)
353 PRK05993 short chain dehydroge 34.5 43 0.00093 33.4 3.7 33 2-40 5-37 (277)
354 PRK13705 plasmid-partitioning 34.4 41 0.00089 36.3 3.8 34 12-45 116-150 (388)
355 PLN02989 cinnamyl-alcohol dehy 34.3 60 0.0013 33.0 4.8 34 2-41 6-39 (325)
356 PRK06505 enoyl-(acyl carrier p 34.1 47 0.001 33.3 4.0 31 2-37 8-39 (271)
357 PRK08690 enoyl-(acyl carrier p 34.1 45 0.00098 33.1 3.8 30 2-36 7-37 (261)
358 PLN02913 dihydrofolate synthet 34.1 28 0.00061 38.9 2.5 32 2-37 76-107 (510)
359 PRK07024 short chain dehydroge 33.9 44 0.00095 32.8 3.6 33 1-39 2-34 (257)
360 PRK04885 ppnK inorganic polyph 33.8 40 0.00086 34.6 3.4 35 362-401 35-71 (265)
361 PRK00698 tmk thymidylate kinas 33.6 76 0.0016 29.9 5.1 34 2-37 4-37 (205)
362 cd02019 NK Nucleoside/nucleoti 33.5 81 0.0018 25.0 4.5 31 4-38 2-32 (69)
363 PRK05866 short chain dehydroge 33.5 42 0.00091 34.1 3.5 30 2-37 41-70 (293)
364 KOG4180 Predicted kinase [Gene 33.5 48 0.001 35.3 3.8 61 311-397 75-135 (395)
365 PRK05579 bifunctional phosphop 33.4 52 0.0011 35.8 4.3 37 2-38 189-235 (399)
366 PRK05717 oxidoreductase; Valid 33.3 46 0.00099 32.5 3.6 30 2-37 11-40 (255)
367 COG3640 CooC CO dehydrogenase 33.3 51 0.0011 33.7 3.9 36 4-41 3-39 (255)
368 PF14359 DUF4406: Domain of un 32.9 2.4E+02 0.0052 24.3 7.5 82 302-395 3-90 (92)
369 TIGR00073 hypB hydrogenase acc 32.9 2.2E+02 0.0047 27.4 8.3 52 14-67 31-84 (207)
370 PRK01390 murD UDP-N-acetylmura 32.8 82 0.0018 34.3 5.8 62 2-73 115-178 (460)
371 PRK00889 adenylylsulfate kinas 32.6 86 0.0019 29.1 5.2 38 2-41 5-42 (175)
372 PRK09620 hypothetical protein; 32.5 61 0.0013 32.4 4.4 36 2-37 4-49 (229)
373 PRK07831 short chain dehydroge 32.4 55 0.0012 32.1 4.0 31 2-37 18-48 (262)
374 PRK05642 DNA replication initi 32.3 33 0.00071 34.1 2.4 60 3-64 47-106 (234)
375 PRK06463 fabG 3-ketoacyl-(acyl 32.1 52 0.0011 32.1 3.8 29 2-36 8-36 (255)
376 PF13450 NAD_binding_8: NAD(P) 32.0 63 0.0014 25.8 3.6 38 14-54 2-39 (68)
377 PRK08340 glucose-1-dehydrogena 31.9 46 0.001 32.6 3.4 29 3-37 2-30 (259)
378 cd06267 PBP1_LacI_sugar_bindin 31.5 2E+02 0.0043 27.2 7.6 31 361-397 54-84 (264)
379 PF13670 PepSY_2: Peptidase pr 31.3 55 0.0012 27.1 3.3 45 16-71 27-72 (83)
380 PF08497 Radical_SAM_N: Radica 31.2 40 0.00086 35.3 2.8 15 23-37 38-52 (302)
381 PRK08017 oxidoreductase; Provi 31.1 58 0.0012 31.6 3.9 32 2-39 3-34 (256)
382 PF03308 ArgK: ArgK protein; 31.1 58 0.0013 33.7 3.9 54 4-79 32-85 (266)
383 PRK06523 short chain dehydroge 31.1 63 0.0014 31.5 4.2 33 2-40 10-42 (260)
384 PRK12859 3-ketoacyl-(acyl-carr 30.8 59 0.0013 31.9 4.0 31 2-37 7-38 (256)
385 cd05014 SIS_Kpsf KpsF-like pro 30.7 2.5E+02 0.0054 24.3 7.6 37 361-399 46-82 (128)
386 TIGR01360 aden_kin_iso1 adenyl 30.2 65 0.0014 29.8 3.9 25 1-27 3-27 (188)
387 PRK07806 short chain dehydroge 30.2 61 0.0013 31.3 3.9 29 2-36 7-35 (248)
388 PRK07814 short chain dehydroge 30.1 58 0.0013 32.1 3.8 34 2-41 11-44 (263)
389 PRK08309 short chain dehydroge 30.0 84 0.0018 30.0 4.7 27 4-37 3-29 (177)
390 PRK05986 cob(I)alamin adenolsy 30.0 54 0.0012 32.2 3.4 28 13-40 30-59 (191)
391 cd01538 PBP1_ABC_xylose_bindin 29.9 3.8E+02 0.0082 26.5 9.7 33 361-397 54-86 (288)
392 PRK06720 hypothetical protein; 29.8 60 0.0013 30.7 3.7 30 2-37 17-46 (169)
393 COG0521 MoaB Molybdopterin bio 29.7 37 0.0008 32.8 2.2 70 314-395 30-100 (169)
394 PRK10846 bifunctional folylpol 29.7 63 0.0014 34.9 4.2 32 2-37 50-81 (416)
395 PRK12937 short chain dehydroge 29.7 58 0.0013 31.2 3.6 29 2-36 6-34 (245)
396 cd06309 PBP1_YtfQ_like Peripla 29.6 2.6E+02 0.0056 27.2 8.3 33 361-397 54-86 (273)
397 PRK06182 short chain dehydroge 29.6 62 0.0013 32.0 3.9 31 2-38 4-34 (273)
398 PRK01710 murD UDP-N-acetylmura 29.5 1.5E+02 0.0033 32.3 7.2 89 282-396 3-106 (458)
399 PF09152 DUF1937: Domain of un 29.5 46 0.001 30.2 2.6 36 360-395 77-112 (116)
400 PRK07063 short chain dehydroge 29.5 62 0.0013 31.6 3.8 30 2-37 8-37 (260)
401 PRK09271 flavodoxin; Provision 29.3 2.1E+02 0.0045 26.6 7.1 42 359-400 48-94 (160)
402 COG0300 DltE Short-chain dehyd 29.3 61 0.0013 33.4 3.8 31 1-37 6-36 (265)
403 COG0451 WcaG Nucleoside-diphos 29.3 67 0.0014 32.0 4.1 32 4-41 3-34 (314)
404 PRK05599 hypothetical protein; 29.2 49 0.0011 32.4 3.1 29 2-37 1-29 (246)
405 PRK07985 oxidoreductase; Provi 29.2 62 0.0013 32.8 3.9 30 2-37 50-79 (294)
406 PHA02754 hypothetical protein; 29.2 48 0.001 26.6 2.3 28 158-186 15-42 (67)
407 cd06320 PBP1_allose_binding Pe 29.1 2.7E+02 0.0058 27.1 8.3 33 361-397 56-88 (275)
408 TIGR01305 GMP_reduct_1 guanosi 29.1 2.8E+02 0.006 29.8 8.7 148 246-412 52-237 (343)
409 PRK06761 hypothetical protein; 29.1 64 0.0014 33.5 3.9 33 2-36 4-36 (282)
410 PTZ00451 dephospho-CoA kinase; 28.9 68 0.0015 32.5 4.0 28 1-34 1-29 (244)
411 PRK09242 tropinone reductase; 28.8 61 0.0013 31.6 3.6 30 2-37 10-39 (257)
412 PRK02645 ppnK inorganic polyph 28.8 1.5E+02 0.0033 30.9 6.8 34 361-399 56-89 (305)
413 PRK06603 enoyl-(acyl carrier p 28.8 63 0.0014 32.0 3.8 30 2-36 9-39 (260)
414 PF01695 IstB_IS21: IstB-like 28.8 74 0.0016 30.4 4.1 39 3-43 49-87 (178)
415 PLN02780 ketoreductase/ oxidor 28.7 53 0.0011 34.1 3.3 32 2-39 54-85 (320)
416 PRK00421 murC UDP-N-acetylmura 28.7 2.4E+02 0.0052 30.7 8.6 81 298-396 8-95 (461)
417 cd01451 vWA_Magnesium_chelatas 28.6 96 0.0021 29.0 4.8 58 365-422 102-171 (178)
418 PRK09186 flagellin modificatio 28.5 67 0.0015 31.1 3.9 31 2-38 5-35 (256)
419 PLN00198 anthocyanidin reducta 28.3 90 0.0019 32.0 5.0 35 1-41 9-43 (338)
420 PRK00081 coaE dephospho-CoA ki 28.3 78 0.0017 30.4 4.2 28 1-34 2-29 (194)
421 KOG0635 Adenosine 5'-phosphosu 28.1 61 0.0013 31.2 3.3 30 3-34 33-62 (207)
422 cd01826 acyloxyacyl_hydrolase_ 28.1 1.4E+02 0.0029 31.6 6.1 73 89-173 75-169 (305)
423 PRK08267 short chain dehydroge 28.0 84 0.0018 30.7 4.5 31 1-37 1-31 (260)
424 PRK08278 short chain dehydroge 27.9 62 0.0013 32.2 3.6 30 2-37 7-36 (273)
425 PF03437 BtpA: BtpA family; I 27.9 3.2E+02 0.0069 28.1 8.7 74 314-395 128-204 (254)
426 PRK07677 short chain dehydroge 27.8 70 0.0015 31.1 3.9 31 2-38 2-32 (252)
427 PRK01368 murD UDP-N-acetylmura 27.7 1.9E+02 0.0042 31.7 7.7 81 293-396 2-92 (454)
428 PRK08993 2-deoxy-D-gluconate 3 27.7 65 0.0014 31.5 3.6 30 2-37 11-40 (253)
429 PRK06125 short chain dehydroge 27.7 69 0.0015 31.4 3.8 32 2-39 8-39 (259)
430 KOG2666 UDP-glucose/GDP-mannos 27.7 3.1E+02 0.0067 29.5 8.6 104 277-395 99-202 (481)
431 PRK10310 PTS system galactitol 27.6 1.2E+02 0.0026 26.0 4.8 38 2-42 4-42 (94)
432 smart00864 Tubulin Tubulin/Fts 27.3 1.1E+02 0.0024 29.3 5.1 104 102-222 53-156 (192)
433 PRK06200 2,3-dihydroxy-2,3-dih 27.3 68 0.0015 31.5 3.7 31 2-38 7-37 (263)
434 PRK12743 oxidoreductase; Provi 27.3 72 0.0016 31.2 3.8 30 1-36 2-31 (256)
435 PRK03369 murD UDP-N-acetylmura 27.0 2.4E+02 0.0051 31.3 8.2 76 299-396 14-99 (488)
436 cd06282 PBP1_GntR_like_2 Ligan 27.0 3.6E+02 0.0078 25.8 8.7 33 361-398 54-86 (266)
437 TIGR00259 thylakoid_BtpA membr 26.8 5E+02 0.011 26.7 9.8 91 298-395 106-204 (257)
438 PRK06732 phosphopantothenate-- 26.8 87 0.0019 31.2 4.3 35 4-38 3-47 (229)
439 cd06301 PBP1_rhizopine_binding 26.6 4.6E+02 0.0099 25.3 9.4 33 361-397 55-87 (272)
440 PRK06057 short chain dehydroge 26.6 73 0.0016 31.1 3.8 30 2-37 8-37 (255)
441 PRK07413 hypothetical protein; 26.6 56 0.0012 35.5 3.1 30 10-39 24-61 (382)
442 COG1660 Predicted P-loop-conta 26.6 54 0.0012 34.0 2.8 21 1-23 1-21 (286)
443 PRK08643 acetoin reductase; Va 26.6 83 0.0018 30.6 4.1 30 2-37 3-32 (256)
444 PF03668 ATP_bind_2: P-loop AT 26.5 73 0.0016 33.2 3.8 28 1-34 1-28 (284)
445 KOG3974 Predicted sugar kinase 26.4 1.5E+02 0.0034 30.8 6.0 47 359-405 98-150 (306)
446 PRK07453 protochlorophyllide o 26.3 69 0.0015 32.8 3.7 30 2-37 7-36 (322)
447 PRK09730 putative NAD(P)-bindi 26.3 90 0.002 29.9 4.3 30 1-36 1-30 (247)
448 PLN02778 3,5-epimerase/4-reduc 26.2 85 0.0018 32.1 4.3 28 3-36 11-38 (298)
449 PF13407 Peripla_BP_4: Peripla 26.2 2.4E+02 0.0051 27.2 7.3 36 361-400 54-89 (257)
450 PRK07478 short chain dehydroge 26.1 75 0.0016 30.9 3.7 30 2-37 7-36 (254)
451 TIGR03575 selen_PSTK_euk L-ser 26.1 95 0.0021 33.1 4.7 39 4-44 2-41 (340)
452 PRK07023 short chain dehydroge 26.0 91 0.002 30.1 4.3 32 1-38 1-32 (243)
453 PRK06938 diaminobutyrate--2-ox 26.0 3E+02 0.0064 30.4 8.7 63 140-216 232-298 (464)
454 PRK12825 fabG 3-ketoacyl-(acyl 25.8 95 0.0021 29.5 4.3 30 1-36 6-35 (249)
455 COG0540 PyrB Aspartate carbamo 25.8 2.9E+02 0.0062 29.4 8.0 113 192-338 86-198 (316)
456 PRK04690 murD UDP-N-acetylmura 25.7 1.3E+02 0.0029 33.0 6.0 82 299-396 10-98 (468)
457 TIGR00521 coaBC_dfp phosphopan 25.7 85 0.0018 34.1 4.3 37 2-38 186-232 (390)
458 cd01537 PBP1_Repressors_Sugar_ 25.4 3.4E+02 0.0075 25.4 8.1 32 361-397 54-85 (264)
459 PRK06128 oxidoreductase; Provi 25.4 88 0.0019 31.7 4.2 30 2-37 56-85 (300)
460 PRK06997 enoyl-(acyl carrier p 25.3 83 0.0018 31.2 3.9 30 2-36 7-37 (260)
461 PRK12823 benD 1,6-dihydroxycyc 25.3 84 0.0018 30.6 3.9 30 2-37 9-38 (260)
462 PRK09417 mogA molybdenum cofac 25.3 1.5E+02 0.0033 29.0 5.6 52 90-151 24-77 (193)
463 PRK14491 putative bifunctional 25.1 1.1E+02 0.0023 35.2 5.2 39 1-41 10-48 (597)
464 COG1834 N-Dimethylarginine dim 25.0 1.1E+02 0.0024 31.7 4.7 92 64-171 51-152 (267)
465 TIGR01289 LPOR light-dependent 24.9 76 0.0016 32.6 3.7 29 2-36 4-33 (314)
466 PF13460 NAD_binding_10: NADH( 24.9 3E+02 0.0066 25.1 7.4 40 358-397 56-95 (183)
467 PLN02686 cinnamoyl-CoA reducta 24.8 1E+02 0.0022 32.5 4.7 31 1-37 53-83 (367)
468 cd01832 SGNH_hydrolase_like_1 24.8 1.5E+02 0.0032 27.3 5.3 45 138-184 66-115 (185)
469 PRK02496 adk adenylate kinase; 24.8 85 0.0018 29.4 3.7 25 1-27 1-25 (184)
470 PRK07062 short chain dehydroge 24.7 84 0.0018 30.8 3.8 33 2-40 9-41 (265)
471 PF02012 BNR: BNR/Asp-box repe 24.6 45 0.00097 18.6 1.0 9 59-67 1-9 (12)
472 PRK08594 enoyl-(acyl carrier p 24.6 89 0.0019 30.9 4.0 31 2-37 8-39 (257)
473 PRK06217 hypothetical protein; 24.5 76 0.0017 29.9 3.3 25 1-27 1-25 (183)
474 PRK12747 short chain dehydroge 24.5 87 0.0019 30.4 3.8 29 2-36 5-33 (252)
475 cd01120 RecA-like_NTPases RecA 24.5 1.4E+02 0.0031 26.1 4.9 38 4-43 2-39 (165)
476 CHL00067 rps2 ribosomal protei 24.3 78 0.0017 31.8 3.5 31 362-398 161-191 (230)
477 PRK06196 oxidoreductase; Provi 24.3 81 0.0018 32.2 3.7 31 2-38 27-57 (315)
478 TIGR00235 udk uridine kinase. 24.3 1E+02 0.0022 29.7 4.2 39 2-44 7-45 (207)
479 PRK06300 enoyl-(acyl carrier p 24.3 80 0.0017 32.7 3.7 31 2-37 9-40 (299)
480 PRK06935 2-deoxy-D-gluconate 3 24.2 80 0.0017 30.8 3.6 30 2-37 16-45 (258)
481 PLN02166 dTDP-glucose 4,6-dehy 24.2 98 0.0021 33.8 4.5 29 4-38 123-151 (436)
482 PRK06550 fabG 3-ketoacyl-(acyl 24.1 96 0.0021 29.6 4.0 32 2-39 6-37 (235)
483 TIGR01472 gmd GDP-mannose 4,6- 24.0 95 0.0021 32.0 4.2 32 2-39 1-32 (343)
484 PRK08862 short chain dehydroge 23.7 89 0.0019 30.5 3.7 30 2-37 6-35 (227)
485 TIGR01963 PHB_DH 3-hydroxybuty 23.7 1E+02 0.0023 29.6 4.2 32 1-38 1-32 (255)
486 COG2403 Predicted GTPase [Gene 23.6 78 0.0017 34.5 3.4 31 9-39 133-163 (449)
487 PRK08415 enoyl-(acyl carrier p 23.6 96 0.0021 31.2 4.0 31 2-37 6-37 (274)
488 TIGR03574 selen_PSTK L-seryl-t 23.6 1.1E+02 0.0024 30.3 4.4 35 4-40 2-36 (249)
489 cd01575 PBP1_GntR Ligand-bindi 23.5 4.1E+02 0.0088 25.4 8.4 31 361-397 54-84 (268)
490 PRK08589 short chain dehydroge 23.5 87 0.0019 31.1 3.7 30 2-37 7-36 (272)
491 PRK07775 short chain dehydroge 23.4 90 0.0019 31.0 3.8 30 2-37 11-40 (274)
492 cd04728 ThiG Thiazole synthase 23.4 3.4E+02 0.0073 27.9 7.8 72 303-389 16-87 (248)
493 PRK07454 short chain dehydroge 23.4 1.1E+02 0.0025 29.3 4.4 33 1-39 6-38 (241)
494 PRK10675 UDP-galactose-4-epime 23.3 1.1E+02 0.0023 31.2 4.4 30 1-37 1-30 (338)
495 TIGR01419 nitro_reg_IIA PTS II 23.2 31 0.00067 31.2 0.4 31 90-121 39-70 (145)
496 PF08756 YfkB: YfkB-like domai 23.2 45 0.00097 31.3 1.4 31 55-87 82-121 (153)
497 COG0426 FpaA Uncharacterized f 23.1 5.7E+02 0.012 28.0 9.9 142 158-340 232-374 (388)
498 PRK08642 fabG 3-ketoacyl-(acyl 23.1 96 0.0021 29.9 3.8 29 2-36 6-34 (253)
499 PRK08277 D-mannonate oxidoredu 23.0 89 0.0019 30.9 3.6 30 2-37 11-40 (278)
500 PLN02623 pyruvate kinase 22.9 8.2E+02 0.018 28.2 11.5 97 282-398 279-383 (581)
No 1
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-203 Score=1578.57 Aligned_cols=501 Identities=55% Similarity=0.901 Sum_probs=483.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ .. +||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999995 22 999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||.++|++|++|||+|||||+.++||+||||||||||+|||+|||||++||||+.+++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|++|+.|++||+++.++++|+|+ .+.+++++|+++++++.++.++++||+||||+++.|||+|+.+||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999999999999999997 467799999999999999877899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc-CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhH
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~-~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICL 399 (524)
+|+|++..+++++.||+|++++.++. +.+. .+|||++|||||.||++|+|.|++|||||++|||||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~-----------~~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENA-----------AELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccch-----------hhhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 99999999999999999999986542 1222 29999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-cCCCCCcccccceeeEeccCCcccccccCCcceeeeeec
Q 009814 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478 (524)
Q Consensus 400 GmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhr 478 (524)
|||++++|||||++|+++|||+||+|.+++||+++|+|+. ...+|||||||+|+|.+++| |+++++|+ +++|.||||
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v~ERHR 458 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEIYERHR 458 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCeeeeecc
Confidence 9999999999999999999999999999999999999974 67799999999999999999 99999996 689999999
Q ss_pred cccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEE-Eec
Q 009814 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVL-LNY 523 (524)
Q Consensus 479 HrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~-vqy 523 (524)
|||||||+|++.++++||+|+|+++||.+||++|+++||||. +||
T Consensus 459 HRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~Qf 504 (533)
T COG0504 459 HRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQF 504 (533)
T ss_pred chhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcc
Confidence 999999999999999999999999999999999999999985 565
No 2
>PLN02327 CTP synthase
Probab=100.00 E-value=4.1e-201 Score=1601.26 Aligned_cols=522 Identities=83% Similarity=1.318 Sum_probs=507.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+||++||+||||||++||+|||+|+|||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|||||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|+||++|++||+++.|+++|+|+...+.+++++|+++++++.++++.++||+||||+++.|||.||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 99999999999999999999999999999999721245679999999999999888899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
+|||+++++++++.||+++++++.+...+|++|+.+|+.|.++|||++|||||+|+.+|++.++++||++++|+||||||
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999987776678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec-cCCcccccccCCcceeeeeecc
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~-~g~s~~~~iYg~~~~I~erhrH 479 (524)
||+|++|||||++||++|+|+||++++++||+++||+++...+|||||||.|+|.+. ++ |+++++|+....|+|||||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~VnerHrH 479 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVDERHRH 479 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCccceeeeecc
Confidence 999999999999999999999999999999999999988889999999999999998 78 9999999744458999999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
||+||+++++.+++.||+++|+++||.+||++|+++|||| .|||
T Consensus 480 RYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQf 524 (557)
T PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQF 524 (557)
T ss_pred ccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEc
Confidence 9999999999998899999999999989999999999999 9998
No 3
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.2e-201 Score=1529.77 Aligned_cols=523 Identities=70% Similarity=1.144 Sum_probs=512.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||+|||||+||+||||+|||+|.|||++|++||.||||||||+|||||||||||||||+|||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+||++|||||||||+.||+|||+||||||||||||||||+|++||+++|++|||+++.+|||||||+||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+|||++++|++|||+|||||||.+++.|||||||||||||+||++|+.||+|+|||.+|+..++|+|||+||+|++++
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCC-hhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 319 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~-~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~a 319 (524)
|++++||+++|.+|++|++||+.+++.++|+|+.... .+.|.+|+.++++.++....++||+||||+.+.|+|.|+.+|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 9999999999999999999999999999999975212 368999999999999988899999999999999999999999
Q ss_pred HHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhH
Q 009814 320 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 320 L~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICL 399 (524)
|.|+++++..+++|.||++.+||+.....+|.+||+||+.++.+|||++|||||+||++|+|.|++|||||++|||||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeecc
Q 009814 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 400 GmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrH 479 (524)
|||+++||||||++|++||+|+||+|++++||+.+|||.+..|||||||||.+++.|.+++|..+++||+...+.|||||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRH 480 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRH 480 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999888999999988999999999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEE-Eec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVL-LNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~-vqy 523 (524)
||||||+.++.|+.+|+.|+|.+.+|.++|++|+++||||. +||
T Consensus 481 RyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~Qf 525 (585)
T KOG2387|consen 481 RYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQF 525 (585)
T ss_pred ceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeecc
Confidence 99999999999999999999999999999999999999997 676
No 4
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=4.5e-191 Score=1521.41 Aligned_cols=502 Identities=56% Similarity=0.908 Sum_probs=484.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|++||||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999995 469999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|++++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|+||++|++||+++.|+++|+|+ .+.+++++|+++++++.++++.++||+||||+++.|+|.||.+||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999997 356679999999999999888899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
.++|+++.+++.+.|+++++++..+ .+.|.++|||++|||||+|+.++++.++++|+++++|+||||||
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 9999999999999999998765322 13478899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-cCCCCCcccccceeeEeccCCcccccccCCcceeeeeecc
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrH 479 (524)
||+|++|||||++||++|||+||+++++|||+++|+++. ..++|||||||+|+|.+.++ |+++++|| +..+.|||||
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~erhrH 459 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVYERHRH 459 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCceeecccc
Confidence 999999999999999999999999999999999999865 68999999999999999999 99999996 6678899999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
||+||+.+.+++++.||+++|+++||++||+||+++|||| +|||
T Consensus 460 ry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQw 504 (525)
T TIGR00337 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQF 504 (525)
T ss_pred eEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEec
Confidence 9999999999988899999999999888999999999998 9998
No 5
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=4.4e-191 Score=1521.65 Aligned_cols=501 Identities=54% Similarity=0.897 Sum_probs=484.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999997 37899999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|||||+.+++++.|+||||||+|++++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|+||++|++||+++.++++|+|+ .+.+++++|+++++++.++.++++||+||||+++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 999999999999999999999999999999997 366789999999999999888999999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
+|+|+++++++++.||++++++.++ +++.+.++|||++|||||+++.++++.++++|+++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999886533 246789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-cCCCCCcccccceeeEeccCCcccccccCCcceeeeeecc
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrH 479 (524)
||+|++||||+++|+++|+|+||++++++||+++|+++. ..++|||||||+|+|.+.++ |+++++|| +..|.|||||
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i~ErhrH 459 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEIYERHRH 459 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCceeeeccc
Confidence 999999999999999999999999999999999998864 56899999999999999999 99999996 7789999999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
||+||+.+.+++++.||+++|+++||++||++|+++|||| .|||
T Consensus 460 ryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQw 504 (533)
T PRK05380 460 RYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQF 504 (533)
T ss_pred ceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeC
Confidence 9999999999998889999999999888999999999988 8998
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=3e-142 Score=1051.17 Aligned_cols=276 Identities=65% Similarity=1.078 Sum_probs=237.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999995 458999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|||||+.+++++.|+||||||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 284 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W 284 (524)
||+++|++++|+||++|++||+++.++++|+|+ .+.+++++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999999999999999998 467799999
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=2.4e-133 Score=981.46 Aligned_cols=255 Identities=62% Similarity=1.031 Sum_probs=252.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 009814 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (524)
Q Consensus 82 ~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~e 161 (524)
|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..++||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCe
Q 009814 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (524)
Q Consensus 162 a~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~V 241 (524)
|+||||+++|++|+||||||||||++++||+|||||||||++||+.||+||+||||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccchhhHHHHHhhh
Q 009814 242 ITLYDVPNIWHIPLLLRDQKA 262 (524)
Q Consensus 242 i~i~dvdtiy~vpl~LreqG~ 262 (524)
+..+|++++|+||+.|++||+
T Consensus 235 I~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 235 ISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred eecCCCcchhhccHHHHhCcC
Confidence 999999999999999999985
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=2.1e-55 Score=432.01 Aligned_cols=202 Identities=33% Similarity=0.467 Sum_probs=186.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
++||+||||+++.|+|.||.+||+|+|+..++++++.||++++++++ +.|+++|||+||||||.||+
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg~ 68 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRND 68 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCcccH
Confidence 68999999999999999999999999999999999999999988642 25889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
+|+|.+|+|||++++|+||||||||+|+||||||++|++||+|+||++++++||+.+|+. .... ..|+|.+.
T Consensus 69 ~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~-~~~~-------~~h~v~l~ 140 (229)
T PRK06186 69 DGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSC-SLVE-------KTGDIRLR 140 (229)
T ss_pred hHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcc-cccc-------CceEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999972 2222 23889999
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcE-EEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIA-VLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~-f~vqy 523 (524)
++ |+++++|| +..|.|||||||+||+.+.+.+++.||+++|+++||. ||+||+++||| +.|||
T Consensus 141 ~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQw 204 (229)
T PRK06186 141 PG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLF 204 (229)
T ss_pred CC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeC
Confidence 99 99999996 7789999999999999999999999999999999995 99999999995 57887
No 9
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=376.52 Aligned_cols=254 Identities=17% Similarity=0.222 Sum_probs=209.6
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcC-CCCCCChhh
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN-LQGTTKEPL 280 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~-l~~~~~~~~ 280 (524)
.+.||.++++.++|+|+.+..+||||++.||..||+.++|++|.+|||| +|+++||++|+|++++..-. +++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 99999999999999876542 221000111
Q ss_pred HHHH-----HHHHHhhcCC------------CCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccc
Q 009814 281 LKEW-----TSRAEICDGL------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 343 (524)
Q Consensus 281 l~~W-----~~lv~~~~~~------------~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~ 343 (524)
...| .+++++++.. ....+|+++ ||+ .+.||++.|..+||.+.+. |++.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~G----vK~nIlr~L~~rg~~vtVV------P~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DFG----VKRNILRELVKRGCRVTVV------PADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-EcC----ccHHHHHHHHHCCCeEEEE------cCCCC--
Confidence 2223 2445444321 124689999 698 9999999999999999987 55421
Q ss_pred cccCCChhhhhHHHHhc-cCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCc
Q 009814 344 ATEKENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (524)
Q Consensus 344 ~~~~~~p~~y~~~~~~l-~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~ 421 (524)
+.+.+ .++|||||||||||| .++..+.+++...+.++|+|||||||||+++|+|++++||+++|+.
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG 280 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRG 280 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccCCCC
Confidence 22433 689999999999999 6788999999999999999999999999999999999999999984
Q ss_pred ccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEE
Q 009814 422 EFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGK 501 (524)
Q Consensus 422 Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~ 501 (524)
.||||+++. .+ +..|++ |||+|+|+++.+. +.. +++++
T Consensus 281 -----~NhPV~dl~----------------------tg----------rv~ITS-QNHGyaVd~~s~~---~~~-~vth~ 318 (368)
T COG0505 281 -----ANHPVKDLD----------------------TG----------RVYITS-QNHGYAVDEDSLV---ETL-KVTHV 318 (368)
T ss_pred -----CCcCccccc----------------------CC----------eEEEEe-cCCceecChhhcC---CCc-eeEEE
Confidence 889998864 12 445775 9999999998443 223 89999
Q ss_pred eCCCCeEEEEEECCCcEEEEec
Q 009814 502 DETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 502 ~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+|.++|++++++.|+|+|||
T Consensus 319 nlnDgTvEGi~h~~~P~fSVQ~ 340 (368)
T COG0505 319 NLNDGTVEGIRHKDLPAFSVQY 340 (368)
T ss_pred eCCCCCccceecCCCceEEEcc
Confidence 9999999999999999999998
No 10
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=1.7e-41 Score=336.34 Aligned_cols=214 Identities=57% Similarity=0.903 Sum_probs=195.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
++||+||||++..|+|.|+.++|.+++.+....+.+.|+++++++..+ .++.+.++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----------~~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AEEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----------hhhhhccCCEEEECCCCCCcch
Confidence 489999999999999999999999999999889999999987764321 1246788999999999999988
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCC-CcCCCCCcccccceeeEe
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~-~~~~~GgtmrLg~~~v~l 456 (524)
++.+.++++++++++|+||||+|||+|+++||++++++++++++|+++.+++|++.++.+. ...++|+|||||.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999998774 577889999999999999
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
.++ |+++++|| ++++.++|+|+|+||++++..+.+.|++++++++|+.+||++|.++|||| +|||
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~ 216 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQF 216 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEEC
Confidence 999 99999996 67778899999999999998766789999999997777999999999999 9998
No 11
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=1.4e-37 Score=324.62 Aligned_cols=254 Identities=17% Similarity=0.248 Sum_probs=195.9
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhH
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l 281 (524)
.++||.+|++.++|||+.+..+||||++.||..||++++|++|.+|||| +|+++||++|+|+++|..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999 999999999999998864222210001112
Q ss_pred HHH-----HHHHHhhcCC------C----CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCcccccc
Q 009814 282 KEW-----TSRAEICDGL------H----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346 (524)
Q Consensus 282 ~~W-----~~lv~~~~~~------~----~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~ 346 (524)
..| .+++++++.. . ...+|+++ ||+ .+.|++++|+.+|+.+.+. +.+.
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~G----~k~ni~~~L~~~G~~v~vv------p~~~------ 205 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DFG----VKQNILRRLVKRGCEVTVV------PYDT------ 205 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eCC----cHHHHHHHHHHCCCEEEEE------cCCC------
Confidence 222 2355555431 1 12589999 587 7789999999999987665 3221
Q ss_pred CCChhhhhHHHHhc-cCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccC
Q 009814 347 KENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (524)
Q Consensus 347 ~~~p~~y~~~~~~l-~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~ 424 (524)
++ .+.. ..+|||||+||||+| .....++.++++.+ ++|+||||||||+|++++|++++++++.|+.
T Consensus 206 --~~------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~~gh~G--- 273 (358)
T TIGR01368 206 --DA------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMKFGHRG--- 273 (358)
T ss_pred --CH------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccCcCcCC---
Confidence 00 1222 357999999999998 45677899999998 9999999999999999999999998876653
Q ss_pred CCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC
Q 009814 425 PNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET 504 (524)
Q Consensus 425 ~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d 504 (524)
.+|||..+. .+ +..++ +|+|+|+|+++.+. +.++++++++.+
T Consensus 274 --~nhpV~~~~----------------------~~----------~v~it-sqnH~~aV~~~~l~---~~~l~vta~~~n 315 (358)
T TIGR01368 274 --GNHPVKDLI----------------------TG----------RVEIT-SQNHGYAVDPDSLP---AGDLEVTHVNLN 315 (358)
T ss_pred --CceeeEECC----------------------CC----------cEEEe-ecCCCcEEcccccC---CCceEEEEEECC
Confidence 456654431 11 22244 48899999886642 458999999987
Q ss_pred CCeEEEEEECCCcEEEEec
Q 009814 505 SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 505 g~~VE~iE~~~hp~f~vqy 523 (524)
+++||++|++++|+|+|||
T Consensus 316 Dg~Vegi~h~~~pi~gVQf 334 (358)
T TIGR01368 316 DGTVEGIRHKDLPVFSVQY 334 (358)
T ss_pred CCcEEEEEECCCCEEEEEE
Confidence 7789999999999999998
No 12
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=2.4e-37 Score=323.33 Aligned_cols=253 Identities=16% Similarity=0.235 Sum_probs=196.7
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHH
Q 009814 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (524)
Q Consensus 203 ~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~ 282 (524)
++||.+|++.++|||+.+..+++||++.||..||++++|++|.+|||| +|+++||++|+|+++|..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999999988642211100011233
Q ss_pred HH-----HHHHHhhcCCC----------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccC
Q 009814 283 EW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 347 (524)
Q Consensus 283 ~W-----~~lv~~~~~~~----------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~ 347 (524)
.| .+++.+++..+ ...+|+++ |++ .+.|++++|+.+|+.+.+. +.+.-
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G----~k~nivr~L~~~G~~v~vv------p~~~~------ 210 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG----VKRNILRELAERGCRVTVV------PATTT------ 210 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC----cHHHHHHHHHHCCCEEEEE------eCCCC------
Confidence 33 35566655421 13589999 587 7789999999999887765 32210
Q ss_pred CChhhhhHHHHhc-cCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC
Q 009814 348 ENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (524)
Q Consensus 348 ~~p~~y~~~~~~l-~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~ 425 (524)
+ .+.. .++||||||||||+| .....++.++++.++++|+||||||||+|++++|+++.+++.+++.
T Consensus 211 --~------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh~G---- 278 (360)
T PRK12564 211 --A------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRG---- 278 (360)
T ss_pred --H------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCCCccC----
Confidence 0 1221 379999999999998 4577889999999989999999999999999999999988776542
Q ss_pred CCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCC
Q 009814 426 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS 505 (524)
Q Consensus 426 ~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg 505 (524)
.+|||.... . ++..++ +|+|+|+|+++.++ .++++++++.++
T Consensus 279 -~~~pv~~~~-----------------------~---------~~~~it-s~~H~~~V~~~~lp----~~l~v~a~~~~D 320 (360)
T PRK12564 279 -ANHPVKDLE-----------------------T---------GKVEIT-SQNHGFAVDEDSLP----ANLEVTHVNLND 320 (360)
T ss_pred -CceeeEECC-----------------------C---------CcEEEE-ecCcccEEcccccC----CceEEEEEeCCC
Confidence 345544321 1 022244 48899999876553 479999999877
Q ss_pred CeEEEEEECCCcEEEEec
Q 009814 506 QRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 506 ~~VE~iE~~~hp~f~vqy 523 (524)
+++|++|++++|+|+|||
T Consensus 321 g~iegi~~~~~pi~gVQf 338 (360)
T PRK12564 321 GTVEGLRHKDLPAFSVQY 338 (360)
T ss_pred CcEEEEEECCCCEEEEEe
Confidence 789999999999999998
No 13
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=9.3e-37 Score=321.69 Aligned_cols=253 Identities=18% Similarity=0.208 Sum_probs=194.4
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCC-CCCCChhh
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL-QGTTKEPL 280 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l-~~~~~~~~ 280 (524)
.+.||.++++.++|||+.+..++|||++.+|..||++++|++|.+|||| +|+++||++|+|+++|..-+. +.......
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999 999999999999999864221 10000111
Q ss_pred HHHH----HHHHHhhcCCC---------------------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEE
Q 009814 281 LKEW----TSRAEICDGLH---------------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 335 (524)
Q Consensus 281 l~~W----~~lv~~~~~~~---------------------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~ 335 (524)
+..| .++++.++... ...+|+++ +++ ++.+|++.|+..|+.+.+.
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~v~Vv----- 268 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCKITVV----- 268 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCeEEEE-----
Confidence 2223 24455554311 11579998 587 8999999999999988876
Q ss_pred eeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccc
Q 009814 336 IPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413 (524)
Q Consensus 336 i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~ 413 (524)
+.+.- +.+. ..++|||||+||||+| .....++.++.+. .++|+||||||||+|+.++|++|.
T Consensus 269 -P~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 269 -PSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred -CCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 33210 1122 2479999999999999 4455667777765 479999999999999999999999
Q ss_pred cccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhc
Q 009814 414 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLEN 493 (524)
Q Consensus 414 gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~ 493 (524)
++++.|+. .++||.++. .+ +..|+ .|+|+|+|+++.++
T Consensus 333 K~~~Gh~G-----~n~pV~~~~----------------------~~----------~v~it-sqnHg~aVd~~sLp---- 370 (415)
T PLN02771 333 KMKFGHHG-----GNHPVRNNR----------------------TG----------RVEIS-AQNHNYAVDPASLP---- 370 (415)
T ss_pred ECCCCccc-----ceEEEEECC----------------------CC----------CEEEE-ecCHHHhhccccCC----
Confidence 98886653 345544321 11 22355 38999999876653
Q ss_pred CCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 494 AGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 494 ~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++++++++.+++++|++++++.|+|+|||
T Consensus 371 ~~~~vt~~nlnDgtvegi~~~~~pi~gVQF 400 (415)
T PLN02771 371 EGVEVTHVNLNDGSCAGLAFPALNVMSLQY 400 (415)
T ss_pred CceEEEEEeCCCCcEEEEEECCCCEEEEEc
Confidence 479999999888889999999999999998
No 14
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=6.6e-36 Score=311.77 Aligned_cols=251 Identities=16% Similarity=0.181 Sum_probs=192.9
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHH
Q 009814 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (524)
Q Consensus 203 ~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~ 282 (524)
++||.+|++.++|||+.+..+||||++.+|..||++++|++|.+|||| +|+++||++|+|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999 99999999999999886422 11 1111222
Q ss_pred HH---HHHHHhhcCCC------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhh
Q 009814 283 EW---TSRAEICDGLH------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 353 (524)
Q Consensus 283 ~W---~~lv~~~~~~~------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y 353 (524)
.| .++++.++..+ ...+|+++ ||+ .+.++.++|+.+|+.+.+. +.+. ++
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G----~k~ni~~~L~~~G~~v~vv------p~~~--------~~--- 201 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG----YKKSILRSLSKRGCKVTVL------PYDT--------SL--- 201 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC----HHHHHHHHHHHCCCeEEEE------ECCC--------CH---
Confidence 22 35566665422 23589999 576 8899999999999887765 3221 00
Q ss_pred hHHHHh-ccCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCe
Q 009814 354 KAAWKL-LKGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPC 431 (524)
Q Consensus 354 ~~~~~~-l~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pV 431 (524)
.+. -.++||||||||||+| .....++.++.+.++ +|+||||||||+|++++|+++.+++.+|+. .+|||
T Consensus 202 ---~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G-----~~hpV 272 (354)
T PRK12838 202 ---EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPFGHRG-----ANHPV 272 (354)
T ss_pred ---HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCCCccC-----CceEE
Confidence 111 1379999999999998 445667888888876 999999999999999999999988776542 34444
Q ss_pred eeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEE
Q 009814 432 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVW 511 (524)
Q Consensus 432 i~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~i 511 (524)
.. ... + ++ .++ +++|+|+|+++.++ ..++.+++++.++++||++
T Consensus 273 ~~-----------------------~~~-~---~~-----~~t-s~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~Veai 316 (354)
T PRK12838 273 ID-----------------------LTT-G---RV-----WMT-SQNHGYVVDEDSLD---GTPLSVRFFNVNDGSIEGL 316 (354)
T ss_pred EE-----------------------CCC-C---eE-----EEe-ccchheEecccccC---CCCcEEEEEECCCCeEEEE
Confidence 32 222 1 12 233 48899999875543 3468999998877789999
Q ss_pred EECCCcEEEEec
Q 009814 512 TFNYKIAVLLNY 523 (524)
Q Consensus 512 E~~~hp~f~vqy 523 (524)
+++++|+|+|||
T Consensus 317 ~~~~~pi~gVQf 328 (354)
T PRK12838 317 RHKKKPVLSVQF 328 (354)
T ss_pred EECCCCEEEEEe
Confidence 999999999998
No 15
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=2.3e-34 Score=302.34 Aligned_cols=253 Identities=16% Similarity=0.208 Sum_probs=190.9
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhH
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l 281 (524)
.++||.+|++.++|||+.+..+||||++.+|..||++++|++|.+|||| +|+++||++|.|+++|..-..+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 999999999999999865322210000111
Q ss_pred HHH-----HHHHHhhcCC-------C----------------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeee
Q 009814 282 KEW-----TSRAEICDGL-------H----------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 333 (524)
Q Consensus 282 ~~W-----~~lv~~~~~~-------~----------------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i 333 (524)
..| .+++++++.. . ...+|+++ |++ ...||.+.|+.+|+.+.+.
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~g----~k~ni~~~L~~~G~~v~vv--- 220 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DFG----VKYNILRRLKSFGCSITVV--- 220 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-ECC----cHHHHHHHHHHCCCeEEEE---
Confidence 112 3455554431 0 13689999 575 6789999999999887665
Q ss_pred EEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc-hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 334 DWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 334 ~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg-~eg~i~air~are~~iP~LGICLGmQll~ie~gr~ 411 (524)
+.+. ++ .+. ..++||||++||||+|. ....++.++.+.+.++|+||||||||+|+.++|++
T Consensus 221 ---p~~~--------~~------~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~ 283 (382)
T CHL00197 221 ---PATS--------PY------QDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAK 283 (382)
T ss_pred ---cCCC--------CH------HHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCE
Confidence 2221 00 111 23799999999999984 45567788888777999999999999999999999
Q ss_pred cccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhh
Q 009814 412 VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARL 491 (524)
Q Consensus 412 v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l 491 (524)
+.+++..+.. .+||+ .+ .+ +..++ .++|+|+|+++.+.
T Consensus 284 v~k~~~Gh~g-----~n~pv-----------------------~~-~~----------~v~it-sq~H~~~v~~~sv~-- 321 (382)
T CHL00197 284 TFKLKFGHRG-----LNHPS-----------------------GL-NQ----------QVEIT-SQNHGFAVNLESLA-- 321 (382)
T ss_pred EeccCCCCCC-----CCEec-----------------------CC-CC----------ceEEe-ecchheEeeccccC--
Confidence 9887765432 22332 10 11 22344 37899999987664
Q ss_pred hcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 492 ENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 492 ~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
..++.+++.+.++.++|+++++++|+|+|||
T Consensus 322 -~~~~~vt~~~~nDgtvegi~h~~~pi~gVQF 352 (382)
T CHL00197 322 -KNKFYITHFNLNDGTVAGISHSPKPYFSVQY 352 (382)
T ss_pred -CCCcEEEEEECCCCCEEEEEECCCCcEEEee
Confidence 2378999998767779999999999999998
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.97 E-value=2.1e-30 Score=285.41 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=211.6
Q ss_pred EEeeeeeeecCCCccccCC-chhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHH
Q 009814 178 IHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 256 (524)
Q Consensus 178 ih~~~vp~~~~~~e~ktkp-tq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~ 256 (524)
|-+---|.++.-|=- +++ -+-..+.++|.+|++.+||+++.+.-.++|++.-||-.|+++++|+++.||||| +|+++
T Consensus 50 iLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk~ 127 (1435)
T KOG0370|consen 50 ILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTKK 127 (1435)
T ss_pred EEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHHH
Confidence 444445777666655 444 445667789999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcC-------CCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeE
Q 009814 257 LRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (524)
Q Consensus 257 LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~-------~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v 329 (524)
|||||.|-+.+...+-++.-..|+ -++++..++. ..+..+|+.+ +.+ .+.++++.|..+|+.+.+
T Consensus 128 lReqGSmLgkl~~e~~~~~~vdpn---~~nLvs~VS~Kep~~y~~Gk~~~I~ai-DcG----~K~N~IRcL~~RGa~vtV 199 (1435)
T KOG0370|consen 128 LREQGSMLGKLSIEKSPVLFVDPN---KRNLVSQVSTKEPKVYGDGKSLRILAI-DCG----LKYNQIRCLVKRGAEVTV 199 (1435)
T ss_pred HHhcCcceeEEEecCCCCcccCCC---cccchhhheeccceEEcCCcccEEEEc-ccC----chHHHHHHHHHhCceEEE
Confidence 999999977664322211000000 0345555543 1335688888 465 889999999999999998
Q ss_pred EeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 330 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 330 ~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
. +.+.. .+ -.++||||++||||+| -....+..++..++.++|+||||+|||+++.|.
T Consensus 200 v------Pw~~~---------------i~-~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~Aa 257 (1435)
T KOG0370|consen 200 V------PWDYP---------------IA-KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAA 257 (1435)
T ss_pred e------cCCcc---------------cc-ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhh
Confidence 6 33221 01 1289999999999999 457888999999998999999999999999999
Q ss_pred ccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhH
Q 009814 409 ARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI 488 (524)
Q Consensus 409 gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v 488 (524)
|++++||+++|+. -|+|+.+. .. ++-.|++ |||+|+|+++.+
T Consensus 258 GakT~KmKyGNRG-----hNiP~~~~-----------------------~t---------Grc~ITS-QNHGYAVD~~tL 299 (1435)
T KOG0370|consen 258 GAKTYKMKYGNRG-----HNIPCTCR-----------------------AT---------GRCFITS-QNHGYAVDPATL 299 (1435)
T ss_pred CCceEEeeccccC-----CCccceec-----------------------cC---------ceEEEEe-cCCceeeccccc
Confidence 9999999998774 34443322 11 1334774 999999999777
Q ss_pred HhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 489 ARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 489 ~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+ .|++....|.++..-|+|.|...|+|+|||
T Consensus 300 p----~gWk~lFvN~NDgSNEGI~Hss~P~fSvQF 330 (1435)
T KOG0370|consen 300 P----AGWKPLFVNANDGSNEGIMHSSKPFFSVQF 330 (1435)
T ss_pred c----CCCchheeecccCCCceEecCCCCceeeec
Confidence 5 488989999988899999999999999998
No 17
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.85 E-value=5.1e-21 Score=183.77 Aligned_cols=160 Identities=28% Similarity=0.382 Sum_probs=113.4
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECC-C-CCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpG-G-fG~r 375 (524)
++|+|+ ||+ +. +..|+.+||+++|+++.+. .+| +.+..+|+||+|| | |++-
T Consensus 2 ~~i~II-Dyg-~G-NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYG-SG-NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcC-cc-hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 579999 698 44 8999999999999877764 233 6788999999999 3 3331
Q ss_pred --ch--hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCC-----CCCCeeeeCCC-CCcCCCCC
Q 009814 376 --GV--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 445 (524)
Q Consensus 376 --g~--eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~-----~~~pVi~l~~e-~~~~~~Gg 445 (524)
++ .|.+++++.+.+.++|+||||||||+|. ..|+|.+.. .+..|+.+.++ .++|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf------------e~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF------------ERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh------------hcccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 22 3789999998889999999999999999 678887542 47888888877 78999999
Q ss_pred cc-cccceeeEeccCCcccccccCCcceeeeeeccccccCh---hhHHhhhcCCeEEEEEeCCCC
Q 009814 446 TM-RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNP---DMIARLENAGLSFTGKDETSQ 506 (524)
Q Consensus 446 tm-rLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~---~~v~~l~~~Gl~~sg~~~dg~ 506 (524)
|- ..- ....|..+-..-..+ +|.|+|.+.+ +.+-.-.++|..|++.-.+|+
T Consensus 123 N~l~~~-~~~~l~~gi~~~~~~---------YFVHSY~~~~~~~~~v~~~~~YG~~f~AaV~k~N 177 (204)
T COG0118 123 NQVEFV-RGHPLFKGIPDGAYF---------YFVHSYYVPPGNPETVVATTDYGEPFPAAVAKDN 177 (204)
T ss_pred ceeecc-CCChhhcCCCCCCEE---------EEEEEEeecCCCCceEEEeccCCCeeEEEEEeCC
Confidence 92 221 111122220000122 5999999875 333333467777877665554
No 18
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.83 E-value=1.3e-19 Score=172.40 Aligned_cols=158 Identities=21% Similarity=0.358 Sum_probs=112.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-chh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g~e 378 (524)
|+++ +|+ +-+++.++|+.+|+.+.+. +.+.- + ......++|||+++||++++ ...
T Consensus 1 i~i~-d~g----~~~~~~~~l~~~G~~~~~~------~~~~~--------~-----~~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFG----VKHNILRELLKRGCEVTVV------PYNTD--------A-----EEILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecC----cHHHHHHHHHHCCCeEEEE------ECCCC--------H-----HHHhhcCCCEEEECCCCCChhHhH
Confidence 4667 577 4468899999999877654 22110 0 00123579999999999986 446
Q ss_pred HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEecc
Q 009814 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (524)
Q Consensus 379 g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~ 458 (524)
..++.++++.++++|+||||+|||+|+.++|+++...+..++. ..++ +....
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~~~g-----~~~~-----------------------v~~~~ 108 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFGHRG-----SNHP-----------------------VKDLI 108 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCCCCCC-----Ccee-----------------------eEEcC
Confidence 7788999999999999999999999999999999764432221 1122 22211
Q ss_pred CCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 459 g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
. + +..+ .++.|+|+|+++.++ .|+++++++.+++.+|++|++++|+++|||
T Consensus 109 ~-~--------~~~~-v~~~H~~~v~~~~lp----~~~~v~a~s~~~~~i~a~~~~~~~i~GvQf 159 (178)
T cd01744 109 T-G--------RVYI-TSQNHGYAVDPDSLP----GGLEVTHVNLNDGTVEGIRHKDLPVFSVQF 159 (178)
T ss_pred C-C--------CcEE-EEcCceEEEcccccC----CceEEEEEECCCCcEEEEEECCCCeEEEee
Confidence 1 1 1111 247799999876553 489999998755569999999999999998
No 19
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.82 E-value=1.7e-19 Score=171.93 Aligned_cols=161 Identities=24% Similarity=0.370 Sum_probs=118.5
Q ss_pred HHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-hhHHHHHHHHHHHcC
Q 009814 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHR 391 (524)
Q Consensus 313 y~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-~eg~i~air~are~~ 391 (524)
-.++.++|+..|+++.+. |++.+.. ..++.+.++|||+++||++++. .+..+.+++++++++
T Consensus 10 ~~~l~~~l~~~~~~~~v~----~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVV----RVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERK 72 (192)
T ss_dssp HHHHHHHHHHTTEEEEEE----ETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEEEE----ECCCchh-------------hhhhhhcCCCEEEECCcCCccccccccccccccccccc
Confidence 367889999998666654 5433111 0112478999999999999996 799999999999999
Q ss_pred CCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcc
Q 009814 392 IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT 471 (524)
Q Consensus 392 iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~ 471 (524)
+|+||||+|||+|+.++|+++...+. .++.||++.+...+. ...+++...
T Consensus 73 ~PilGIC~G~Q~la~~~G~~v~~~~~----------------------~~~~g~~~~~~~~~~--------~~~~~~~~~ 122 (192)
T PF00117_consen 73 IPILGICLGHQILAHALGGKVVPSPE----------------------KPHHGGNIPISETPE--------DPLFYGLPE 122 (192)
T ss_dssp SEEEEETHHHHHHHHHTTHEEEEEES----------------------EEEEEEEEEEEEEEE--------HGGGTTSTS
T ss_pred eEEEEEeehhhhhHHhcCCccccccc----------------------ccccccccccccccc--------ccccccccc
Confidence 99999999999999999999853221 134455544322221 112332234
Q ss_pred eeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 472 FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 472 ~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
....++.|+|+|++. .+...|+++.+.+.++..++++...++|++++||
T Consensus 123 ~~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~Qf 171 (192)
T PF00117_consen 123 SFKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQF 171 (192)
T ss_dssp EEEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTSEEEESS
T ss_pred ccccccccceeeecc---cccccccccccccccccccccccccccEEEEEec
Confidence 566789999999985 2224689999999888569999999999999998
No 20
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.81 E-value=2.8e-19 Score=171.72 Aligned_cols=164 Identities=17% Similarity=0.184 Sum_probs=109.3
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCchh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg~e 378 (524)
|.+++.|.++. .++.+.|+..|+++.+. +.+++.. .+. ..++||||++||||+|...
T Consensus 2 il~idn~Dsft---~nl~~~l~~~g~~v~v~------~~~~~~~-------------~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 2 ILLIDNYDSFT---WNLYQYFCELGADVLVK------RNDALTL-------------ADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEEECCCccH---HHHHHHHHHCCCcEEEE------eCCCCCH-------------HHHHhcCCCEEEEcCCCCChHHC
Confidence 77888776432 57899999999877764 3332211 111 2479999999999998432
Q ss_pred -HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 379 -g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
-....++. .+.++|+||||||||+|+.++|+++.+....+.. ...++ ...
T Consensus 60 ~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~g-----~~~~v-----------------------~~~ 110 (187)
T PRK08007 60 GISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG-----KTSPI-----------------------THN 110 (187)
T ss_pred CccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCCcccC-----CceEE-----------------------EEC
Confidence 23455554 4678999999999999999999999764432211 11121 111
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.. ++...+- ....+ .+.|+|.|++..+ ..|++++|.+.++. +|++++++.|+++|||
T Consensus 111 ~~-~l~~~~~-~~~~v--~~~H~~~v~~~~l----p~~~~v~a~~~~~~-i~a~~~~~~~i~GvQf 167 (187)
T PRK08007 111 GE-GVFRGLA-NPLTV--TRYHSLVVEPDSL----PACFEVTAWSETRE-IMGIRHRQWDLEGVQF 167 (187)
T ss_pred CC-CcccCCC-CCcEE--EEcchhEEccCCC----CCCeEEEEEeCCCc-EEEEEeCCCCEEEEEe
Confidence 11 2222211 11223 3779998865433 35899999998876 9999999999999998
No 21
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.80 E-value=8.1e-19 Score=168.55 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=111.4
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg~ 377 (524)
|.+++.|. +| .++.+.|+..|+.+.+. +.+... . .+. -.++|||+|+||||++..
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~v~v~------~~~~~~-------~------~~~~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 2 VLMIDNYD----SFTYNLVQYFCELGAEVVVK------RNDSLT-------L------QEIEALLPLLIVISPGPCTPNE 58 (188)
T ss_pred EEEEECCc----CHHHHHHHHHHHcCCceEEE------ECCCCC-------H------HHHHhcCCCEEEEcCCCCChhh
Confidence 67887665 55 57889999998887665 222110 0 011 136899999999999843
Q ss_pred -hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 -eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.-..+.++++ ..++|+||||+|||+++.++|+++.+.+.. + | |+ ..++.+
T Consensus 59 ~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~~---~-------------------~-g~-----~~~v~~ 109 (188)
T TIGR00566 59 AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANTV---M-------------------H-GK-----TSEIEH 109 (188)
T ss_pred cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCCc---c-------------------c-cc-----eEEEEE
Confidence 2336777777 678999999999999999999999653211 0 1 11 122333
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+. +++..+.+ + ....+.|+|.|+++.+ ..++++++.+.+++.+|+++++++|+++|||
T Consensus 110 ~~~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQf 168 (188)
T TIGR00566 110 NGA-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLPLEGVQF 168 (188)
T ss_pred CCC-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCCEEEEEe
Confidence 222 33334442 2 2224779999976444 3579999999876579999999999999998
No 22
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.78 E-value=4.5e-18 Score=167.41 Aligned_cols=139 Identities=21% Similarity=0.361 Sum_probs=104.8
Q ss_pred HhccCCCEEEECCCCC-------C----------C-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCC
Q 009814 358 KLLKGADGILVPGGFG-------N----------R-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG-------~----------r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~ 419 (524)
+.+...||+++|||-. . | .....+..||.|++.++|+||||+|||+|+++||++++ ++..
T Consensus 56 ~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~--q~i~ 133 (243)
T COG2071 56 QYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLY--QDIS 133 (243)
T ss_pred HHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeee--hhhh
Confidence 4577899999999921 1 0 12467899999999999999999999999999999984 3322
Q ss_pred CcccCCCCCCCeeeeCCCCCcCCC-CCcccccceeeEeccCCcccccccCCc-ceeeeeeccccccChhhHHhhhcCCeE
Q 009814 420 STEFDPNTKNPCVIFMPEGSKTHM-GGTMRLGSRRTYFQIKDCKSAKLYGNR-TFIDERHRHRYEVNPDMIARLENAGLS 497 (524)
Q Consensus 420 S~Ef~~~~~~pVi~l~~e~~~~~~-GgtmrLg~~~v~l~~g~s~~~~iYg~~-~~I~erhrHrYeVn~~~v~~l~~~Gl~ 497 (524)
.... .+ .|. +.......|++.++++ |.+++++|.. ..+++.| | |.+++| +.||+
T Consensus 134 ~~~~----------~~-----~H~~~~~~~~~~H~V~i~~~-s~La~i~g~~~~~VNS~H-h------QaIk~L-a~~L~ 189 (243)
T COG2071 134 EQPG----------HI-----DHRQPNPVHIESHEVHIEPG-SKLAKILGESEFMVNSFH-H------QAIKKL-APGLV 189 (243)
T ss_pred cccc----------cc-----cccCCCCcccceeEEEecCC-ccHHHhcCccceeecchH-H------HHHHHh-CCCcE
Confidence 2110 01 121 1123344799999999 9999999744 4677755 4 889998 78999
Q ss_pred EEEEeCCCCeEEEEEECC-CcEEEEec
Q 009814 498 FTGKDETSQRMEVWTFNY-KIAVLLNY 523 (524)
Q Consensus 498 ~sg~~~dg~~VE~iE~~~-hp~f~vqy 523 (524)
++++++||. |||||.++ ..++.||.
T Consensus 190 V~A~a~DG~-VEAie~~~~~fvlGVQW 215 (243)
T COG2071 190 VEARAPDGT-VEAVEVKNDAFVLGVQW 215 (243)
T ss_pred EEEECCCCc-EEEEEecCCceEEEEec
Confidence 999999875 99999996 66778885
No 23
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.77 E-value=6.6e-18 Score=165.64 Aligned_cols=169 Identities=18% Similarity=0.205 Sum_probs=111.8
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-h
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-V 377 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-~ 377 (524)
+|.+++.|.++ + .++.+.|+..|+.+.+. +.+.-.. .+..+.+.++|||||+|||+++. .
T Consensus 2 ~ilv~d~~~~~--~-~~~~~~l~~~G~~~~~~------~~~~~~~----------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYDSF--V-FNLVQYLGQLGVEAEVW------RNDDPRL----------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCCcH--H-HHHHHHHHHcCCcEEEE------ECCCcCH----------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 67788655422 1 25678899899887764 2221000 00112356899999999999973 3
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
.-.+..++++.++++|+||||+|||+|+.++|+++.+.+. . +. |++ +.+.+.
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~--~-~~--------------------g~~-----~~v~~~ 114 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE--L-LH--------------------GKT-----SSVHHT 114 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC--C-cc--------------------Cce-----eEEEEC
Confidence 4466899999999999999999999999999999965221 1 10 111 112222
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.. +.+..+. + ...-.+.|+|.|.+..+ ..|+.+++.+.++. +|+++++++|+++|||
T Consensus 115 ~~-~~~~~~~--~-~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~i~gvQf 171 (214)
T PRK07765 115 GV-GVLAGLP--D-PFTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELPIHGVQF 171 (214)
T ss_pred CC-ccccCCC--C-ccEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCCEEEEee
Confidence 21 2221221 1 12234789998875443 34899999998776 9999999999999998
No 24
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.77 E-value=1e-17 Score=160.23 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=116.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
.+|.+++.|.++. +++.+.|+..|+++.+..+ ++++. .+-...++|+|++|.|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~rn------d~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVVRN------DDISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEEEC------CccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 4799999887543 5888999999977776521 11211 0012357999999999999965
Q ss_pred hH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.| ..++|+.+ ..++|+||||||||.++.+||++|-..+.--+... . + +.|.|.
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~----s-~---------i~h~g~----------- 114 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKT----S-I---------ITHDGS----------- 114 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCee----e-e---------eecCCc-----------
Confidence 55 66777777 66899999999999999999999965443222110 0 0 111111
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.....+. +.-.+. |+ |+-.++++.++ ..+++++++.||+.+.+++++++|.+.|||
T Consensus 115 ----~iF~glp-~~f~v~-RY-HSLvv~~~~lP----~~l~vtA~~~d~~~IMai~h~~~pi~gvQF 170 (191)
T COG0512 115 ----GLFAGLP-NPFTVT-RY-HSLVVDPETLP----EELEVTAESEDGGVIMAVRHKKLPIYGVQF 170 (191)
T ss_pred ----ccccCCC-CCCEEE-ee-EEEEecCCCCC----CceEEEEEeCCCCEEEEEeeCCCCEEEEec
Confidence 1111122 122333 55 88888887665 479999999998889999999999999998
No 25
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.76 E-value=1.7e-17 Score=159.44 Aligned_cols=166 Identities=12% Similarity=0.136 Sum_probs=109.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
++|.+++.|.+. . .++.++|+.+|+++.+. ..++.+ + +.+.++||||++||||.+..
T Consensus 2 ~~iliid~~dsf--~-~~i~~~l~~~g~~~~v~------~~~~~~-------~-------~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSF--T-FNLVDLIRKLGVPMQVV------NVEDLD-------L-------DEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCch--H-HHHHHHHHHcCCcEEEE------ECCccC-------h-------hHhccCCEEEECCCCCChHH
Confidence 478999766533 2 35899999999887765 222111 1 35678999999999997632
Q ss_pred -hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 -eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
....+.++. .+.++|+||||||||+|+.++|++|.+++.. .|.+++ ++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~----------------------~~g~~~------~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNNV----------------------RHGQQR------PLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCCC----------------------ccCceE------EEEE
Confidence 233455554 4678999999999999999999998543210 111111 1222
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++ +.+.+-.. ....-.|.|+|.+.+..++ .++..++.+.++. ++++++.++|++++||
T Consensus 110 ~~~-~~l~~~~~--~~~~v~~~Hs~~v~~~~lp----~~l~~~a~~~~~~-i~a~~~~~~pi~GvQF 168 (190)
T PRK06895 110 RSN-SPLFDGLP--EEFNIGLYHSWAVSEENFP----TPLEITAVCDENV-VMAMQHKTLPIYGVQF 168 (190)
T ss_pred CCC-ChhhhcCC--CceEEEcchhheecccccC----CCeEEEEECCCCc-EEEEEECCCCEEEEEe
Confidence 222 21211111 1222347899998754332 4788888877664 9999999999999998
No 26
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.76 E-value=1.2e-17 Score=161.74 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=105.7
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg~ 377 (524)
|.+|+.|. +| .++.+.|+..|+++.+. ..+... + .+ ...++||||++||||++..
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~v~v~------~~~~~~-------~------~~~~~~~~d~iIlsgGP~~p~~ 58 (195)
T PRK07649 2 ILMIDNYD----SFTFNLVQFLGELGQELVVK------RNDEVT-------I------SDIENMKPDFLMISPGPCSPNE 58 (195)
T ss_pred EEEEeCCC----ccHHHHHHHHHHCCCcEEEE------eCCCCC-------H------HHHhhCCCCEEEECCCCCChHh
Confidence 67887665 54 46899999999887765 222211 1 01 1247999999999999833
Q ss_pred hH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.+ ....++. .+.++|+||||||||+|+.++|++|.+.+.. +. |++ ..+..
T Consensus 59 ~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~~---~~--------------------G~~-----~~i~~ 109 (195)
T PRK07649 59 AGISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAERL---MH--------------------GKT-----SLMHH 109 (195)
T ss_pred CCCchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCCc---cc--------------------CCe-----EEEEE
Confidence 22 3344443 3578999999999999999999999654321 11 111 01111
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.++...+. ....+ .+.|+|.|.+..+ ..|+++++.+.++. +++++++++|+++|||
T Consensus 110 -~~~~lf~~~~-~~~~v--~~~H~~~v~~~~l----p~~~~~~a~s~~~~-v~a~~~~~~~i~gvQF 167 (195)
T PRK07649 110 -DGKTIFSDIP-NPFTA--TRYHSLIVKKETL----PDCLEVTSWTEEGE-IMAIRHKTLPIEGVQF 167 (195)
T ss_pred -CCChhhcCCC-CCCEE--EEechheEecccC----CCCeEEEEEcCCCc-EEEEEECCCCEEEEEE
Confidence 1112222222 11122 4778988754333 35899999987775 9999999999999998
No 27
>PLN02335 anthranilate synthase
Probab=99.76 E-value=1.5e-17 Score=163.93 Aligned_cols=173 Identities=13% Similarity=0.131 Sum_probs=108.8
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGN 374 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~ 374 (524)
...+|.+++.|.+ -..++.+.|+.+|+++.+. +.+.++. .+ ...++|||||+||||.
T Consensus 17 ~~~~ilviD~~ds---ft~~i~~~L~~~g~~~~v~------~~~~~~~-------------~~~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 17 QNGPIIVIDNYDS---FTYNLCQYMGELGCHFEVY------RNDELTV-------------EELKRKNPRGVLISPGPGT 74 (222)
T ss_pred ccCcEEEEECCCC---HHHHHHHHHHHCCCcEEEE------ECCCCCH-------------HHHHhcCCCEEEEcCCCCC
Confidence 4468999965542 2367899999999888775 3322211 11 1346899999999999
Q ss_pred CchhHH-HHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccccee
Q 009814 375 RGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (524)
Q Consensus 375 rg~eg~-i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~ 453 (524)
+...+. .+.++ +.+.++|+||||||||+|+.++|+++...+.. .+. +...|+... ..
T Consensus 75 p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~--~~~--G~~~~v~~~-~~---------------- 132 (222)
T PLN02335 75 PQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFG--VMH--GKSSPVHYD-EK---------------- 132 (222)
T ss_pred hhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCc--ccc--CceeeeEEC-CC----------------
Confidence 843332 23333 34567999999999999999999998654321 000 011111110 00
Q ss_pred eEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCc-EEEEec
Q 009814 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKI-AVLLNY 523 (524)
Q Consensus 454 v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp-~f~vqy 523 (524)
..+ +++..+. . ...-.|.|+|.|+++.++ ..++++++.+.++. ++++|++++| +|+|||
T Consensus 133 ---~~~-~Lf~~l~--~-~~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQf 192 (222)
T PLN02335 133 ---GEE-GLFSGLP--N-PFTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQF 192 (222)
T ss_pred ---CCC-hhhhCCC--C-CCEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEe
Confidence 001 1222221 1 122247899999865443 33599999987775 9999999999 899998
No 28
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.75 E-value=1.9e-17 Score=158.84 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=104.6
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch-
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV- 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~- 377 (524)
|.+++.| |+| .++.+.|+.+|+.+.+. +.+..+.. ..+. .++||||++||||++..
T Consensus 2 iliid~~----d~f~~~i~~~l~~~g~~~~v~------~~~~~~~~-----------~~~~-~~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNY----DSFTYNLVQYLGELGAEVVVY------RNDEITLE-----------EIEA-LNPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECC----CchHHHHHHHHHHCCCcEEEE------ECCCCCHH-----------HHHh-CCCCEEEEcCCCCChHHc
Confidence 6778544 455 57899999999888765 32211100 0112 35899999999999833
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
......++. ...++|+||||+|||+|+.++|+++.+.+..+. |++ +++. .
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~~~~-----------------------g~~-----~~v~-~ 109 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMH-----------------------GKT-----SPIE-H 109 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCCccc-----------------------Cce-----eEEE-e
Confidence 223445554 456899999999999999999999965432111 111 1111 0
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++++...+. ....-.|.|+|.|++..+ ..++++.+.+.++ .+|+++++++|+++|||
T Consensus 110 ~~~~l~~~~~---~~~~v~~~H~~~v~~~~l----p~~~~~la~s~~~-~i~a~~~~~~~~~gvQf 167 (189)
T PRK05670 110 DGSGIFAGLP---NPFTVTRYHSLVVDRESL----PDCLEVTAWTDDG-EIMGVRHKELPIYGVQF 167 (189)
T ss_pred CCCchhccCC---CCcEEEcchhheeccccC----CCceEEEEEeCCC-cEEEEEECCCCEEEEee
Confidence 1101111111 112225889999864222 3589999999655 59999999999999998
No 29
>CHL00101 trpG anthranilate synthase component 2
Probab=99.75 E-value=2e-17 Score=159.02 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=106.1
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg~ 377 (524)
|.+++.|. +| .++.+.|+..|+.+.+. +.+.... .+ ...++||||++||||++..
T Consensus 2 iliid~~d----sft~~l~~~l~~~g~~~~v~------~~~~~~~-------------~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILIIDNYD----SFTYNLVQSLGELNSDVLVC------RNDEIDL-------------SKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEEECCC----chHHHHHHHHHhcCCCEEEE------ECCCCCH-------------HHHhhCCCCEEEECCCCCChHH
Confidence 67776444 44 46889999999877664 3322110 11 2257999999999999843
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
.+....+..+.+.++|+||||+|||+|+.++|++|.+.+.... |++ ..+. .
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~-----------------------g~~-----~~~~-~ 109 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPMH-----------------------GKT-----SKIY-H 109 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCCccc-----------------------Cce-----eeEe-e
Confidence 3333344445678999999999999999999999966432111 111 0000 0
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCc-EEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKI-AVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp-~f~vqy 523 (524)
....+...+ .....-.+.|+|.|++..+ ..|+.+.+.+.++. +|+++++++| ++.|||
T Consensus 110 ~~~~l~~~~---~~~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQf 168 (190)
T CHL00101 110 NHDDLFQGL---PNPFTATRYHSLIIDPLNL----PSPLEITAWTEDGL-IMACRHKKYKMLRGIQF 168 (190)
T ss_pred CCcHhhccC---CCceEEEcchhheeecccC----CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEe
Confidence 110111111 1112234789999875333 34799999987765 9999999999 999998
No 30
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.73 E-value=7.4e-17 Score=162.12 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=97.2
Q ss_pred HhccCCCEEEECCCCCC--C---------c------hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCC
Q 009814 358 KLLKGADGILVPGGFGN--R---------G------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~--r---------g------~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S 420 (524)
+.+..+||||++||+.+ | . ....++.+++|.++++|+||||+|||+|+++||+++.. +..
T Consensus 57 ~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~--~~~- 133 (254)
T PRK11366 57 QLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR--KLC- 133 (254)
T ss_pred HHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee--ccc-
Confidence 34677999999999643 1 1 13567899999999999999999999999999999963 210
Q ss_pred cccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcc--eeeeeeccccccChhhHHhhhcCCeEE
Q 009814 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLENAGLSF 498 (524)
Q Consensus 421 ~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~--~I~erhrHrYeVn~~~v~~l~~~Gl~~ 498 (524)
+......|. .. ......+ ...+.+.+.+.++ +++..+|++.. .+++.| | +.+..+ ..|+++
T Consensus 134 -~~~~~~~h~----~~-~~~~~~~--~~~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H-~------q~V~~l-~~gl~v 196 (254)
T PRK11366 134 -EQPELLEHR----ED-PELPVEQ--QYAPSHEVQVEEG-GLLSALLPECSNFWVNSLH-G------QGAKVV-SPRLRV 196 (254)
T ss_pred -ccccccccc----cC-Ccccccc--ccCCceEEEECCC-CcHHHhcCCCceEEeehHH-H------HHHhhc-ccceEE
Confidence 000000000 00 0000000 0113477888888 88888874222 344433 3 566666 679999
Q ss_pred EEEeCCCCeEEEEEECCCcE-EEEec
Q 009814 499 TGKDETSQRMEVWTFNYKIA-VLLNY 523 (524)
Q Consensus 499 sg~~~dg~~VE~iE~~~hp~-f~vqy 523 (524)
+|+++||. +|++|++++|| +.|||
T Consensus 197 ~A~s~dg~-ieAie~~~~~~~~GVQw 221 (254)
T PRK11366 197 EARSPDGL-VEAVSVINHPFALGVQW 221 (254)
T ss_pred EEEcCCCc-EEEEEeCCCCCEEEEEe
Confidence 99998885 99999999997 99997
No 31
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.73 E-value=6.6e-17 Score=154.71 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=108.3
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc--CCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~--~~DGIllpGGfG~rg~ 377 (524)
|+++ ||+.. .-.++.++|+..|+++.+. +.+++ + +.+. ++||||+|||++++..
T Consensus 1 i~ii-D~g~~--~~~~l~~~l~~~g~~~~~~----~~~~~----------~-------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQ--YTQLIARRLRELGVYSELV----PNTTP----------L-------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCch--HHHHHHHHHHHcCCEEEEE----eCCCC----------H-------HHHhhcCCCEEEECCCCCCcCc
Confidence 4677 57632 4567889999999877654 21110 1 2222 3569999999998754
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
......++.+.+.++|+||||+|||+|+.++|+++...+. +++|+ .++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-----------------------~~~g~------~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-----------------------REYGK------AELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-----------------------cccee------EEEEEe
Confidence 4567788999999999999999999999999998854321 11222 233333
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+. +.+.+-. ...+.-.+.|+|.+.. + ..++++.+.+.+. .+++++.++.|++++||
T Consensus 108 ~~-~~l~~~~--~~~~~~~~~H~~~v~~-----l-~~~~~vla~~~~~-~v~a~~~~~~~~~g~Qf 163 (188)
T TIGR00888 108 DE-DDLFRGL--PDESTVWMSHGDKVKE-----L-PEGFKVLATSDNC-PVAAMAHEEKPIYGVQF 163 (188)
T ss_pred cC-CHhhcCC--CCCcEEEeEccceeec-----C-CCCCEEEEECCCC-CeEEEEECCCCEEEEee
Confidence 32 2111111 1123335779988732 2 4578999988865 59999999999999998
No 32
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.73 E-value=4e-17 Score=160.35 Aligned_cols=165 Identities=22% Similarity=0.242 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC-CC-C---------c-------
Q 009814 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF-GN-R---------G------- 376 (524)
Q Consensus 315 SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf-G~-r---------g------- 376 (524)
+-+++++.+|+..... +... ++ ....+.+..+||||+|||. .- | .
T Consensus 28 ~Yv~~i~~aG~~pv~i------p~~~--------~~---~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~ 90 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPI------PYDA--------DD---EELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPE 90 (217)
T ss_dssp HHHHHHHHTT-EEEEE-------SS----------H---HHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHH
T ss_pred HHHHHHHHcCCEEEEE------ccCC--------CH---HHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHH
Confidence 3478899999865543 2211 01 1123567899999999998 32 1 1
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 -~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..-.+..+++|+++++|+||||+|||+|++++|++++. +.... . + ..... .+. -....|.+.
T Consensus 91 rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q--~~~~~-~--~----~~~~~-----~~~---~~~~~h~v~ 153 (217)
T PF07722_consen 91 RDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQ--DIPDQ-P--G----FPDHR-----QHP---QDFPSHPVR 153 (217)
T ss_dssp HHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEES--CCCCS-S-------EEECE-----E-S----TS--EEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCcee--ecccC-c--C----ccccc-----ccc---cccccccce
Confidence 12467788899999999999999999999999999854 22211 0 0 00000 000 034568888
Q ss_pred eccCCcccccccC-CcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCC--cEEEEec
Q 009814 456 FQIKDCKSAKLYG-NRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYK--IAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg-~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~h--p~f~vqy 523 (524)
+.++ |.++++++ .+..+++ .|.++|.+ + +.|++++|+++||. +|+||.+++ |++.||+
T Consensus 154 i~~~-s~l~~~~~~~~~~vns--~Hhq~v~~-----l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQw 214 (217)
T PF07722_consen 154 IVPG-SLLAKILGSEEIEVNS--FHHQAVKP-----L-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQW 214 (217)
T ss_dssp EETT-STCCCTSHHCTEEEEE--EECEEECC-----H-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS
T ss_pred eccC-chHHHHhCcCcceeec--chhhhhhc-----c-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEe
Confidence 9998 99999996 3344554 45577765 3 56999999999776 999999996 5999997
No 33
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.72 E-value=1e-16 Score=154.03 Aligned_cols=164 Identities=12% Similarity=0.196 Sum_probs=102.4
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg~ 377 (524)
|.+|+.|. +| .++.+.|+..|+++.+. ..+.... .+. ..++||||++||||++..
T Consensus 2 il~id~~d----sf~~nl~~~l~~~~~~~~v~------~~~~~~~-------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYD----SFTYNLYQYFCELGTEVMVK------RNDELQL-------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEEE------eCCCCCH-------------HHHHhcCCCeEEEcCCCCChHh
Confidence 67887665 55 47889999999887765 3322211 111 237899999999999833
Q ss_pred hH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.+ ....++. .+.++|+||||+|||+|+.++|+++...+. .|.+. ..++.
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~---~~~G~---~~~~~----------------------- 108 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ---VMHGK---TSAIC----------------------- 108 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc---ceecc---eEEEE-----------------------
Confidence 22 3344443 467899999999999999999999965321 11110 01110
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCe---EEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR---MEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~---VE~iE~~~hp~f~vqy 523 (524)
....++...+- ....+ .+.|+|.|++..+ ..++.+++.+.++.. ++++++++.|++.|||
T Consensus 109 ~~~~~lf~~l~-~~~~v--~~~Hs~~v~~~~l----p~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQf 171 (191)
T PRK06774 109 HSGQGVFRGLN-QPLTV--TRYHSLVIAADSL----PGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQF 171 (191)
T ss_pred ecCchhhcCCC-CCcEE--EEeCcceeeccCC----CCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEE
Confidence 00001111110 11123 4778988864333 358999999886543 5567788889999998
No 34
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.71 E-value=2e-16 Score=150.78 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=104.4
Q ss_pred EEEeccCCCcchHH-HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhH
Q 009814 301 AMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (524)
Q Consensus 301 aiVGkY~~~~day~-SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg 379 (524)
.+++.|. .|. ++.+.|+.+|+++.+. +.+.-.+ ....+.++||||++||+|.+....
T Consensus 2 l~~~~~~----~~~~~~~~~l~~~G~~~~~~------~~~~~~~------------~~~~~~~~dgvil~gG~~~~~~~~ 59 (184)
T cd01743 2 LLIDNYD----SFTYNLVQYLRELGAEVVVV------RNDEITL------------EELELLNPDAIVISPGPGHPEDAG 59 (184)
T ss_pred EEEeCCC----ccHHHHHHHHHHcCCceEEE------eCCCCCH------------HHHhhcCCCEEEECCCCCCcccch
Confidence 3554443 443 4678899899877764 2221100 001357899999999999874444
Q ss_pred HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccC
Q 009814 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459 (524)
Q Consensus 380 ~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g 459 (524)
....++.+.++++|+||||+|||+|+.++|+++...+... .|++ +++.+.+.
T Consensus 60 ~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~~-----------------------~g~~-----~~v~~~~~ 111 (184)
T cd01743 60 ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEPM-----------------------HGKT-----SEIHHDGS 111 (184)
T ss_pred hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCCC-----------------------cCce-----eEEEECCC
Confidence 4555666667889999999999999999999986432110 1111 12222221
Q ss_pred CcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 460 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 460 ~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+..+- ....-.+.|+|.|+..-. ..++++.+.++++ .+++++++++|++.|||
T Consensus 112 -~~~~~~~---~~~~~~~~H~~~v~~~~~----~~~~~~la~~~~~-~v~a~~~~~~~i~gvQf 166 (184)
T cd01743 112 -GLFKGLP---QPFTVGRYHSLVVDPDPL----PDLLEVTASTEDG-VIMALRHRDLPIYGVQF 166 (184)
T ss_pred -ccccCCC---CCcEEEeCcEEEEecCCC----CceEEEEEeCCCC-eEEEEEeCCCCEEEEee
Confidence 2221111 112235889999865211 1247888888777 59999999999999998
No 35
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.70 E-value=2.6e-16 Score=151.69 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=104.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCchh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg~e 378 (524)
|.+++.|.++. .++.+.|+.+|+.+.+. +.+..+. .. ...++|+|+++|||+++...
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~~~~~------~~~~~~~-------------~~~~~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYDSFT---YNLYQYFCELGAQVKVV------RNDEIDI-------------DGIEALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCCCcH---HHHHHHHHHCCCcEEEE------ECCCCCH-------------HHHhhCCCCEEEEeCCCCChHHC
Confidence 77887666332 46889999999887765 3221110 01 12368999999999998322
Q ss_pred -HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 379 -g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
-....++. .+.++|+||||||||+|+.++|+++.+.+.. |. |++ +++...
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~~---~~--------------------G~~-----~~~~~~ 110 (193)
T PRK08857 60 GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQV---MH--------------------GKT-----SPIRHT 110 (193)
T ss_pred cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCCc---ee--------------------Cce-----EEEEEC
Confidence 23455554 4678999999999999999999999653321 11 111 011111
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeC--CCC--eEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQ--RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~--dg~--~VE~iE~~~hp~f~vqy 523 (524)
.. +++..+- .+..+ .+.|++.|++..+ ..+++++|.+. ++. .+|+++++++|+|+|||
T Consensus 111 ~~-~l~~~~~-~~~~v--~~~H~~~v~~~~l----p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQf 172 (193)
T PRK08857 111 GR-SVFKGLN-NPLTV--TRYHSLVVKNDTL----PECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQF 172 (193)
T ss_pred CC-cccccCC-CccEE--EEccEEEEEcCCC----CCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEee
Confidence 11 1111111 11223 4678898864333 35899999886 332 48899999999999998
No 36
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.69 E-value=4.8e-16 Score=147.20 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=104.1
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhH
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg 379 (524)
|+++ ||+.. .-.++.++|+.+|+.+.+. +.+.-. ....+.++||||+|||++.+..+.
T Consensus 1 i~~i-D~g~~--~~~~~~~~l~~~G~~~~~~------~~~~~~-------------~~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGSQ--YTHLIARRVRELGVYSEIL------PNTTPL-------------EEIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCCc--hHHHHHHHHHhcCceEEEe------cCCCCh-------------hhhcccCCCEEEECCCcccccccc
Confidence 4567 46621 2356789999999766554 211100 012467899999999998763222
Q ss_pred HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccC
Q 009814 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459 (524)
Q Consensus 380 ~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g 459 (524)
.....+++++.++|+||||+|||+|+.++|+++.+.+. ++.|++ ++.+.++
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~-----------------------~~~G~~------~v~~~~~ 109 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDK-----------------------REYGKA------EIEIDDS 109 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCC-----------------------CcceEE------EEEecCC
Confidence 33456777788999999999999999999998854221 112222 2222222
Q ss_pred CcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 460 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 460 ~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.+-. .......+.|+|+|. .+ ..++++.+.+.++. +|+++.++.|++.+||
T Consensus 110 -~~l~~~~--~~~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-i~a~~~~~~~~~g~Qf 163 (181)
T cd01742 110 -SPLFEGL--PDEQTVWMSHGDEVV-----KL-PEGFKVIASSDNCP-VAAIANEEKKIYGVQF 163 (181)
T ss_pred -ChhhcCC--CCceEEEcchhhhhh-----hc-CCCcEEEEeCCCCC-EEEEEeCCCcEEEEEc
Confidence 2111111 112333477888763 23 35789999988665 9999999999999998
No 37
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.67 E-value=8.2e-16 Score=173.72 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=115.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
...+|++| +|+. ..-.++.++|+..|+.+.+. +....+. .-...++|||||+||||.+
T Consensus 515 ~~~~IlVI-D~gd--s~~~~l~~~L~~~G~~v~vv------~~~~~~~-------------~~~~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLV-DHED--SFVHTLANYLRQTGASVTTL------RHSHAEA-------------AFDERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEE-ECCC--hhHHHHHHHHHHCCCeEEEE------ECCCChh-------------hhhhcCCCEEEEcCCCCCc
Confidence 34689999 4762 13468999999999887654 1111000 0123579999999999998
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
...+....++.+.+.++|+||||||||+|+.++|+++..++. +++|+. .++.
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~-----------------------p~~G~~-----~~V~ 624 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPE-----------------------PVHGKA-----SRIR 624 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCC-----------------------CeeCcc-----eEEE
Confidence 655667889999999999999999999999999999865432 222321 1111
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+...+++...+ . ....-.|.|+|.+....+ ..++.+++.+.++. +++++++++|++.|||
T Consensus 625 ~~~~~~Lf~~l-p--~~~~v~~~HS~~~~~~~L----P~~~~vlA~s~d~~-v~Ai~~~~~~i~GVQF 684 (717)
T TIGR01815 625 VLGPDALFAGL-P--ERLTVGRYHSLFARRDRL----PAELTVTAESADGL-IMAIEHRRLPLAAVQF 684 (717)
T ss_pred ECCCChhhhcC-C--CCCEEEEECCCCcccccC----CCCeEEEEEeCCCc-EEEEEECCCCEEEEEe
Confidence 11110111111 1 112224789998755433 35899999997765 9999999999999998
No 38
>PRK13566 anthranilate synthase; Provisional
Probab=99.65 E-value=1.5e-15 Score=171.89 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=115.8
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
...+|.+| +|... .-.++.+.|+..|+.+.+. ..+.-+. .-...++|||||+||||.+
T Consensus 525 ~g~~IlvI-D~~ds--f~~~l~~~Lr~~G~~v~vv------~~~~~~~-------------~~~~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLV-DHEDS--FVHTLANYFRQTGAEVTTV------RYGFAEE-------------MLDRVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEE-ECCCc--hHHHHHHHHHHCCCEEEEE------ECCCChh-------------HhhhcCCCEEEECCCCCCh
Confidence 34689999 46621 3457889999999887664 2211000 0123579999999999998
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
...+....++.+.++++|+||||||||+|+.++|+++..++..++ |+ .+++.
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~~-----------------------G~-----~~~V~ 634 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMH-----------------------GK-----PSRIR 634 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCCcc-----------------------CC-----ceEEE
Confidence 655678899999999999999999999999999999966433211 11 12233
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+. +.+.+-. ...+.-.+.|+|.+....+ ..++++++.+.++. |+++++++.|++.|||
T Consensus 635 v~~~-~~Lf~~l--p~~~~v~~~Hs~~v~~~~L----p~~~~vlA~s~dg~-V~ai~~~~~pi~GVQF 694 (720)
T PRK13566 635 VRGP-GRLFSGL--PEEFTVGRYHSLFADPETL----PDELLVTAETEDGV-IMAIEHKTLPVAAVQF 694 (720)
T ss_pred ECCC-CchhhcC--CCCCEEEEecceeEeeccC----CCceEEEEEeCCCc-EEEEEECCCCEEEEec
Confidence 3222 2111111 1122234778887654333 35899999998775 9999999999999998
No 39
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.65 E-value=1.5e-15 Score=172.66 Aligned_cols=173 Identities=18% Similarity=0.223 Sum_probs=111.2
Q ss_pred CCeEEEEEeccCCCcchH-HHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day-~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
.+++|.+++.|. +| .++.+.|+.. +..+.+ .++..+..+. +.+..+..+|||||+||||
T Consensus 4 ~~~~iL~ID~~D----Sft~nl~~~l~~~~g~~~~v----~vv~~d~~~~-----------~~~~~l~~~D~VVIspGPG 64 (742)
T TIGR01823 4 QRLHVLFIDSYD----SFTYNVVRLLEQQTDISVHV----TTVHSDTFQD-----------QLLELLPLFDAIVVGPGPG 64 (742)
T ss_pred CCceEEEEeCCc----chHHHHHHHHHHhcCCCcEE----EEEeCCCCch-----------hhhhhhcCCCEEEECCCCC
Confidence 457999997664 55 4788888776 333222 2234333211 0123467899999999999
Q ss_pred CCchhHHHHHHHHHHHc----CCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccc
Q 009814 374 NRGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (524)
Q Consensus 374 ~rg~eg~i~air~are~----~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrL 449 (524)
.|..+..+..++.+++. ++|+||||||||+|+.++|+++...+..++ |+.
T Consensus 65 ~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~h-----------------------G~~--- 118 (742)
T TIGR01823 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKH-----------------------GQV--- 118 (742)
T ss_pred CccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCc-----------------------CeE---
Confidence 99766666677777765 499999999999999999999865432211 110
Q ss_pred cceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 450 g~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+..... .+...+. ...+ .+.|+|.++++..+.+ .+.+++.+.++..+|+++++++|+|+|||
T Consensus 119 --~~v~~~~~-~lf~gl~--~~~v--~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi~GVQF 182 (742)
T TIGR01823 119 --YEMHTNDA-AIFCGLF--SVKS--TRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPWFGVQY 182 (742)
T ss_pred --EEEEECCc-cccCCCC--CCce--eEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCceEEEEe
Confidence 11111111 1122222 1122 3668999876544322 25667777777789999999999999998
No 40
>PRK00758 GMP synthase subunit A; Validated
Probab=99.64 E-value=3.8e-15 Score=142.07 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=99.6
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCC-CEEEECCCCCCCchh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~-DGIllpGGfG~rg~e 378 (524)
|++++ |.. +.-.++.++|+.+|+.+.+. +.+. .+ +.+.+. ||||+|||+......
T Consensus 2 i~iid-~~~--~~~~~i~~~l~~~g~~~~~~------~~~~--------~~-------~~l~~~~dgivi~Gg~~~~~~~ 57 (184)
T PRK00758 2 IVVVD-NGG--QYNHLIHRTLRYLGVDAKII------PNTT--------PV-------EEIKAFEDGLILSGGPDIERAG 57 (184)
T ss_pred EEEEE-CCC--chHHHHHHHHHHcCCcEEEE------ECCC--------CH-------HHHhhcCCEEEECCCCChhhcc
Confidence 77885 541 13457889999999865443 2211 11 345566 999999998432211
Q ss_pred HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEecc
Q 009814 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (524)
Q Consensus 379 g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~ 458 (524)
...+++++.++|+||||+|||+|+.++|+++...+. .|+ | ..++.+.+
T Consensus 58 ---~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~---~~~--------------------g------~~~i~~~~ 105 (184)
T PRK00758 58 ---NCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEY---GEY--------------------A------LVEVEILD 105 (184)
T ss_pred ---ccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCC---cee--------------------e------eEEEEEcC
Confidence 223344467899999999999999999998854321 111 1 12222222
Q ss_pred CCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 459 g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.++.. . .....-.+.|+|.|. .+ ..++++.+.++++. +|+++.+++|++.+||
T Consensus 106 ~~~l~~~-~--~~~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-v~a~~~~~~~~~g~Qf 160 (184)
T PRK00758 106 EDDILKG-L--PPEIRVWASHADEVK-----EL-PDGFEILARSDICE-VEAMKHKEKPIYGVQF 160 (184)
T ss_pred CChhhhC-C--CCCcEEEeehhhhhh-----hC-CCCCEEEEECCCCC-EEEEEECCCCEEEEEc
Confidence 2121211 1 112223477888763 23 45799999998886 9999999999999998
No 41
>PLN02347 GMP synthetase
Probab=99.62 E-value=8.6e-15 Score=160.96 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=106.2
Q ss_pred EEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCCC
Q 009814 299 RIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (524)
Q Consensus 299 ~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~r 375 (524)
+|+++ ||+. .| .+|.++|+..|+.+.+. +.+. ++ +.+ .++|||||||||+.+
T Consensus 12 ~IlII-D~G~---~~t~~I~r~lrelgv~~~v~------p~~~--------~~-------~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 12 VVLIL-DYGS---QYTHLITRRVRELGVYSLLL------SGTA--------SL-------DRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred EEEEE-ECCC---cHHHHHHHHHHHCCCeEEEE------ECCC--------CH-------HHHhcCCCCEEEECCCCCcc
Confidence 69999 5872 44 58899999999877654 2221 11 223 379999999999875
Q ss_pred chh---H-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccc
Q 009814 376 GVQ---G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (524)
Q Consensus 376 g~e---g-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~ 451 (524)
... . ....++.+.+.++|+||||+|||+|+.++|++|.... ..|+ |+
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~---~~e~--------------------G~------ 117 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE---KQEY--------------------GR------ 117 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC---Cccc--------------------ce------
Confidence 211 1 1234566667899999999999999999999985432 1121 21
Q ss_pred eeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++.+..+ +.+.+-........-.+.|+|.|.. + ..|+++.|.+.++. ++++++++.|+|+|||
T Consensus 118 ~~v~i~~~-~~Lf~~l~~~~~~~v~~~Hsd~V~~-----l-P~g~~vlA~s~~~~-iaai~~~~~~i~GvQF 181 (536)
T PLN02347 118 MEIRVVCG-SQLFGDLPSGETQTVWMSHGDEAVK-----L-PEGFEVVAKSVQGA-VVAIENRERRIYGLQY 181 (536)
T ss_pred EEEEEcCC-ChhhhcCCCCceEEEEEEEEEEeee-----C-CCCCEEEEEeCCCc-EEEEEECCCCEEEEEc
Confidence 22222222 1111111001012224789987742 2 35899999998886 9999999999999998
No 42
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.61 E-value=2.2e-14 Score=140.29 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=104.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg 376 (524)
.+|++++.|.+ ...|+.+.|+..|+.+.+. +.+. . ..+. ..++|||||+||||++.
T Consensus 2 ~~il~iD~~ds---f~~nl~~~l~~~g~~~~v~------~~~~-~-------------~~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 2 THVVLIDNHDS---FVYNLVDAFAVAGYKCTVF------RNTV-P-------------VEEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred CEEEEEECCcC---HHHHHHHHHHHCCCcEEEE------eCCC-C-------------HHHHHhcCCCEEEEeCCCCCHH
Confidence 36999964432 4578999999999888775 3221 0 0112 24789999999999984
Q ss_pred hhH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcc-cccceee
Q 009814 377 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM-RLGSRRT 454 (524)
Q Consensus 377 ~eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggtm-rLg~~~v 454 (524)
..+ ..+.++.+. .++|+||||+|||+|+.++|+++.... .+.. .-.++ .+. +.|.+- -++..++
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~----~~~G--~~~~i-~~~------~~~~~~~l~~~~~~ 124 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG----PVHG--TTDNM-ILT------DAGVQSPVFAGLAT 124 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC----cccc--eEEEe-EEC------CCCCCCcccCCCCc
Confidence 333 244555444 479999999999999999999996421 1110 00011 110 001000 0011111
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC--CCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET--SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d--g~~VE~iE~~~hp~f~vqy 523 (524)
.+.++ ...+.+.+..+. .-|+++| ..+ ..|+++.|.+.+ +..+++++.++.|+++|||
T Consensus 125 ~~~~~---~~~~~g~~~~V~--~~H~~~v-----~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQf 184 (208)
T PRK05637 125 DVEPD---HPEIPGRKVPIA--RYHSLGC-----VVA-PDGMESLGTCSSEIGPVIMAAETTDGKAIGLQF 184 (208)
T ss_pred ccccc---cccccCCceEEE--Eechhhh-----hcC-CCCeEEEEEecCCCCCEEEEEEECCCCEEEEEe
Confidence 11111 112222222343 3366555 333 468999998765 3468999999999999998
No 43
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.61 E-value=4.8e-15 Score=163.27 Aligned_cols=163 Identities=14% Similarity=0.197 Sum_probs=104.8
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCc-eeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVD-LRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG 376 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~-~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg 376 (524)
|.+|+.|. +| .++.+.|+..|+. +.+. .+.+.+ . .+. ..++||||++||||+|.
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~~v~~~------~~~~~~-------~------~~~~~~~~d~vIlsgGP~~p~ 58 (534)
T PRK14607 2 IILIDNYD----SFTYNIYQYIGELGPEEIEVV------RNDEIT-------I------EEIEALNPSHIVISPGPGRPE 58 (534)
T ss_pred EEEEECch----hHHHHHHHHHHHcCCCeEEEE------CCCCCC-------H------HHHHhcCCCEEEECCCCCChh
Confidence 67887665 54 5789999999875 3322 222221 1 111 24789999999999972
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 -~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
....++.++. .+.++|+||||+|||+|+.++|+++.+.+..+.. ..+++.
T Consensus 59 ~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~G-----~~~~v~----------------------- 109 (534)
T PRK14607 59 EAGISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRILHG-----KTSPID----------------------- 109 (534)
T ss_pred hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCccccC-----CceeEE-----------------------
Confidence 2233455665 3678999999999999999999999664432111 111111
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.... +....+- ....+ .+.|+|.|+...+ ..++++.+.+.++. +|+++++++|+++|||
T Consensus 110 ~~~~-~lf~~~~-~~~~v--~~~Hs~~v~~~~l----p~~~~vlA~s~d~~-i~a~~~~~~pi~GvQF 168 (534)
T PRK14607 110 HNGK-GLFRGIP-NPTVA--TRYHSLVVEEASL----PECLEVTAKSDDGE-IMGIRHKEHPIFGVQF 168 (534)
T ss_pred ECCC-cchhcCC-CCcEE--eeccchheecccC----CCCeEEEEEcCCCC-EEEEEECCCCEEEEEe
Confidence 1111 1111110 01122 4779988864323 35899999998776 9999999999999998
No 44
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.61 E-value=1.9e-14 Score=139.29 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=99.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg- 376 (524)
++|+++ ||+ .. ++.|+.++|+..|+++.+. . ++ +.+.++|+||+|| +|.+.
T Consensus 1 m~i~ii-d~g-~g-n~~s~~~~l~~~g~~~~~v------~-----------~~-------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTG-CA-NLSSVKFAIERLGYEPVVS------R-----------DP-------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCC-Cc-hHHHHHHHHHHCCCeEEEE------C-----------CH-------HHhCCCCEEEECC-CCchHH
Confidence 479999 687 33 8999999999998766654 1 11 4567899999977 55542
Q ss_pred -hhHH--HHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCC-CCCcCCCCCcccccce
Q 009814 377 -VQGK--ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMP-EGSKTHMGGTMRLGSR 452 (524)
Q Consensus 377 -~eg~--i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~-e~~~~~~GgtmrLg~~ 452 (524)
.... ...++.+++.++|+||||+|||+|+.+++... +.+. .+ -.+..|..+.. ..+.+|+||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~-~~~~-----lg-~~~g~v~~~~~~~~~~p~~G~~------ 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESG-GVDC-----LG-IIDGPVKKMTDFGLPLPHMGWN------ 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCC-CCCC-----cc-cccEEEEECCCCCCCCCccccc------
Confidence 1111 12344555668999999999999998874321 0000 00 01122322221 2356788886
Q ss_pred eeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 453 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 453 ~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
++.+.++ +.+.+-. ..+..-.|.|+|++.++ ....+.+.++. .-+..+.+.+++.+||
T Consensus 120 ~v~~~~~-~~l~~~l--~~~~~v~~~Hs~~lp~~---------~~~la~s~~~~-~~~~~~~~~~i~G~QF 177 (196)
T PRK13170 120 QVTPQAG-HPLFQGI--EDGSYFYFVHSYAMPVN---------EYTIAQCNYGE-PFSAAIQKDNFFGVQF 177 (196)
T ss_pred eeEeCCC-ChhhhCC--CcCCEEEEECeeecCCC---------CcEEEEecCCC-eEEEEEEcCCEEEEEC
Confidence 2233233 2111111 11222358899987432 23456666655 3334456678999998
No 45
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.60 E-value=1.6e-14 Score=141.63 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg- 376 (524)
++|+++ +|+ .. +..|+.++|+.+|+++.+. +. + +.+.++|+|++|| +|++.
T Consensus 2 ~~v~ii-d~~-~G-N~~sl~~al~~~g~~v~vv------~~-----------~-------~~l~~~d~iIlPG-~g~~~~ 53 (210)
T CHL00188 2 MKIGII-DYS-MG-NLHSVSRAIQQAGQQPCII------NS-----------E-------SELAQVHALVLPG-VGSFDL 53 (210)
T ss_pred cEEEEE-EcC-Cc-cHHHHHHHHHHcCCcEEEE------cC-----------H-------HHhhhCCEEEECC-CCchHH
Confidence 479999 697 33 7899999999999877654 11 0 3456799999887 55532
Q ss_pred ----h--hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeC--CCCCcCCCCCcc-
Q 009814 377 ----V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGGTM- 447 (524)
Q Consensus 377 ----~--eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~--~e~~~~~~Ggtm- 447 (524)
+ .+....++.+.++++|+||||+|||+|+-.+..... .. -.-.+..|..+. +..+++|+||+.
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~-----~g---lg~~~G~v~~~~~~~~~~~p~~Gw~~v 125 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKE-----EG---LGIYKGQVKRLKHSPVKVIPHMGWNRL 125 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCc-----CC---ccceeEEEEECCCCCCCccCccCCccc
Confidence 1 256678888888999999999999999855433210 00 001233343332 224689999983
Q ss_pred cccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 448 rLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
++-.....-.+. ++...+ .....-.+.|+|.+.|.. ..-+..+....++..+.+++. .++|.|||
T Consensus 126 ~~~~~~~~~~~~-~lf~~l---~~~~~v~~~HS~~v~p~~-----~~~l~~t~~~~~~~~v~a~~~--~~i~GvQF 190 (210)
T CHL00188 126 ECQNSECQNSEW-VNWKAW---PLNPWAYFVHSYGVMPKS-----QACATTTTFYGKQQMVAAIEY--DNIFAMQF 190 (210)
T ss_pred eecCCcccccCC-hhhcCC---CCCCEEEEeCccEecCCC-----CceEEEEEecCCcceEEEEec--CCEEEEec
Confidence 221110000000 111111 112222467999886531 112444444433345889986 39999998
No 46
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.56 E-value=7.8e-14 Score=136.70 Aligned_cols=178 Identities=17% Similarity=0.189 Sum_probs=103.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc--h
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--V 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg--~ 377 (524)
|+|+ ||+ .. +-.|+.+||+..+.+.... . +| +.+.++|+|++||+ |.+. +
T Consensus 2 i~ii-dyg-~g-Nl~s~~~al~~~~~~~~~~------~-----------~~-------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYG-MG-NIHSCLKAVSLYTKDFVFT------S-----------DP-------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECC-Cc-hHHHHHHHHHHcCCeEEEE------C-----------CH-------HHhccCCEEEECCC-CchHHHH
Confidence 7889 698 44 8899999999998755432 1 11 45679999999995 5431 1
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCC-CCCcCCCCCcccccc
Q 009814 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMP-EGSKTHMGGTMRLGS 451 (524)
Q Consensus 378 -----eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~-e~~~~~~GgtmrLg~ 451 (524)
.|....++.+.+.++|+||||+|||+|+-+++-..-+. ++.+.+.=.-.+..|..+.. ..+++|+||+.-
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~-~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v--- 129 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGT-KKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRL--- 129 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCC-cCcccCCcceeEEEEEEcCCCCCcCCccCcccc---
Confidence 36778888888889999999999999996553210000 00000000001233333311 246799999821
Q ss_pred eeeEec--cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC-CCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQ--IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~--~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d-g~~VE~iE~~~hp~f~vqy 523 (524)
.+. .+.++...+ .....-.|.|+|.+++. .-+..++.+.+ +..+-++. .+.++|.+||
T Consensus 130 ---~~~~~~~~~lf~~l---~~~~~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~i~GvQF 190 (210)
T PRK14004 130 ---QIRRKDKSKLLKGI---GDQSFFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKENIFGTQF 190 (210)
T ss_pred ---eeccCCCCccccCC---CCCCEEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCCEEEEeC
Confidence 111 110111111 11122258899865331 12456676666 54344444 6789999998
No 47
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.56 E-value=7e-14 Score=134.44 Aligned_cols=129 Identities=20% Similarity=0.215 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-c----------------
Q 009814 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G---------------- 376 (524)
Q Consensus 314 ~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g---------------- 376 (524)
.++.++|+.+|+.+.+. +...- ..+....+.++||||+|||++.. .
T Consensus 22 ~~~~~~l~~~G~~~~iv------~~~~~-----------~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVLL------PPVDD-----------EEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEEe------CCCCC-----------hHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 46789999999876554 21110 00011346789999999998541 1
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 -~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
....+..++++.+.++|+||||+|||+|+.++|+++.+.+
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~--------------------------------------- 125 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI--------------------------------------- 125 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC---------------------------------------
Confidence 1234788899999999999999999999999999873211
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECC-CcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNY-KIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~-hp~f~vqy 523 (524)
.++ +.|+++| ..+ ..++++++.+.|+. +|++++++ .++++|||
T Consensus 126 ----------------~v~--~~H~~~v-----~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQf 169 (189)
T cd01745 126 ----------------RVN--SLHHQAI-----KRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQW 169 (189)
T ss_pred ----------------cee--chHHHHH-----hhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEec
Confidence 011 3476655 333 46899999987764 99999998 69999998
No 48
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.54 E-value=3.1e-14 Score=137.67 Aligned_cols=106 Identities=23% Similarity=0.292 Sum_probs=72.6
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--ch
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--GV 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r--g~ 377 (524)
|+++ +|+ .. +..|+.+||++.|+++.+. .. | +.+.++|+|++||+ |.. ..
T Consensus 2 i~ii-dyg-~g-N~~s~~~al~~~g~~~~~v------~~-----------~-------~~l~~~D~lIlPG~-g~~~~~~ 53 (192)
T PRK13142 2 IVIV-DYG-LG-NISNVKRAIEHLGYEVVVS------NT-----------S-------KIIDQAETIILPGV-GHFKDAM 53 (192)
T ss_pred EEEE-EcC-Cc-cHHHHHHHHHHcCCCEEEE------eC-----------H-------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 698 33 8899999999988766543 21 1 45778999999985 332 11
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccC----CCCCCCeeeeCCCCCcCCCCCcc
Q 009814 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD----PNTKNPCVIFMPEGSKTHMGGTM 447 (524)
Q Consensus 378 -----eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~----~~~~~pVi~l~~e~~~~~~Ggtm 447 (524)
.|..++++. ..++|+||||+|||+|+-.. +|.. .-.+..|..+.++.+++|+||+.
T Consensus 54 ~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~------------~eg~~~GLgll~~~V~rf~~~~~vph~GWn~ 118 (192)
T PRK13142 54 SEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS------------DEGDASGLGFIPGNISRIQTEYPVPHLGWNN 118 (192)
T ss_pred HHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc------------ccCCcCccCceeEEEEECCCCCCCCcccccc
Confidence 245666666 46899999999999999442 1210 01244555654446789999983
No 49
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.53 E-value=1e-13 Score=152.09 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=105.3
Q ss_pred EEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc--CCCEEEECCCCCCC
Q 009814 299 RIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 375 (524)
Q Consensus 299 ~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~--~~DGIllpGGfG~r 375 (524)
+|+++ ||+. .| .+|.++|+.+|+.+.+. +.+. .+ +.+. ++||||+||||.+.
T Consensus 5 ~i~vl-D~Gs---q~~~li~r~lrelg~~~~v~------p~~~--------~~-------~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 5 KILIL-DFGS---QYTQLIARRVRELGVYSEIV------PYDI--------SA-------EEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred EEEEE-ECCC---CcHHHHHHHHHHCCCeEEEE------ECCC--------CH-------HHHhccCCCEEEECCCCccc
Confidence 68999 5873 34 46889999999876664 2211 01 2232 56999999999865
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
-.++.....+.+.+.++|+||||+|||+|+.++|+++...+ ..|+ |.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~---~~e~--------------------------G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAG---KREY--------------------------GRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecC---Cccc--------------------------ceEEEE
Confidence 22222333456677899999999999999999999884321 1121 122333
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.++ +.+.+-...+ ..-.+.|+++|. .+ ..|+++.+.+.++. ++++++.+.|+++|||
T Consensus 111 i~~~-~~Lf~~l~~~--~~v~~~H~d~V~-----~l-p~g~~vlA~s~~~~-v~ai~~~~~~i~GvQF 168 (511)
T PRK00074 111 VDND-SPLFKGLPEE--QDVWMSHGDKVT-----EL-PEGFKVIASTENCP-IAAIANEERKFYGVQF 168 (511)
T ss_pred EcCC-ChhhhcCCCc--eEEEEECCeEEE-----ec-CCCcEEEEEeCCCC-EEEEEeCCCCEEEEeC
Confidence 3333 2222212111 222467888763 22 45899999998765 9999999999999998
No 50
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.52 E-value=3.8e-13 Score=130.48 Aligned_cols=169 Identities=22% Similarity=0.203 Sum_probs=99.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~-- 377 (524)
|+++ ||+ .+ +-.|+.++|+..|+++.+. .. + +.+.++|+||+|| +|.+..
T Consensus 2 i~ii-d~g-~~-n~~~v~~~l~~~g~~~~~~------~~-----------~-------~~l~~~d~lilPG-~g~~~~~~ 53 (201)
T PRK13152 2 IALI-DYK-AG-NLNSVAKAFEKIGAINFIA------KN-----------P-------KDLQKADKLLLPG-VGSFKEAM 53 (201)
T ss_pred EEEE-ECC-CC-cHHHHHHHHHHCCCeEEEE------CC-----------H-------HHHcCCCEEEECC-CCchHHHH
Confidence 7888 698 33 6699999999998764432 21 1 3567899999987 444311
Q ss_pred -----hHHHHHHHH-HHHcCCCEEEEhHhHHHHHHH-hccccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCCccc
Q 009814 378 -----QGKILAAKY-AREHRIPYLGICLGMQVAVIE-FARSVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTMR 448 (524)
Q Consensus 378 -----eg~i~air~-are~~iP~LGICLGmQll~ie-~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~Ggtmr 448 (524)
.+....++. +.+.++|+||||+|||+|+.+ .++.. .++-. . .+..|..+.. ....+|+||+
T Consensus 54 ~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~--~~~lg--~----~~g~v~~~~~~~~~~~~~~g~~-- 123 (201)
T PRK13152 54 KNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGV--CEGLG--F----IEGEVVKFEEDLNLKIPHMGWN-- 123 (201)
T ss_pred HHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCC--cCCcc--c----ccEEEEECCCCCCCcCCccCeE--
Confidence 123445544 568899999999999999976 11111 01100 0 1223333211 1234566654
Q ss_pred ccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCC-eEEEEEECCCcEEEEec
Q 009814 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 449 Lg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~-~VE~iE~~~hp~f~vqy 523 (524)
++.+.++ +.+.+..+ ......+.|+|.+.. . ...+++.+.++. .+++++ +.+++.|||
T Consensus 124 ----~v~~~~~-~~l~~~l~--~~~~~~~vHS~~v~~--~------~~~v~a~~~~g~~~~~a~~--~~~i~GvQF 182 (201)
T PRK13152 124 ----ELEILKQ-SPLYQGIP--EKSDFYFVHSFYVKC--K------DEFVSAKAQYGHKFVASLQ--KDNIFATQF 182 (201)
T ss_pred ----EEEECCC-ChhhhCCC--CCCeEEEEcccEeec--C------CCcEEEEECCCCEEEEEEe--cCCEEEEeC
Confidence 4555555 43433332 123335789998853 1 135778777664 455666 568999998
No 51
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.52 E-value=3.6e-13 Score=131.70 Aligned_cols=172 Identities=20% Similarity=0.177 Sum_probs=101.2
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++ +|+ .. +..|+.++|+..|+++ ++.|+.. | +.+.++|||||||+....
T Consensus 2 ~~~~ii-d~g-~g-n~~s~~~al~~~g~~~----~v~~~~~-----------~-------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYG-SG-NLRSAAKALERAGAGA----DVVVTAD-----------P-------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECC-CC-hHHHHHHHHHHcCCCc----cEEEECC-----------H-------HHhcCCCEEEECCCCcHHHH
Confidence 589999 598 43 6789999999999864 2334331 1 457899999999963321
Q ss_pred --ch--hHHHHHH-HHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC-----CCCCCeeeeCC---CCCcCC
Q 009814 376 --GV--QGKILAA-KYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP-----NTKNPCVIFMP---EGSKTH 442 (524)
Q Consensus 376 --g~--eg~i~ai-r~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~-----~~~~pVi~l~~---e~~~~~ 442 (524)
.+ .+..+++ +.+.++++|+||||+|||+|+-+ +.|+.. -.+..|..+.+ ..+.+|
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~------------~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~ 124 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFER------------GLEHGDTPGLGLIPGEVVRFQPDGPALKVPH 124 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhc------------ccccCCCCCcceEeEEEEEcCCCCCCCccCc
Confidence 11 1334444 44556899999999999999954 111100 01112222111 124577
Q ss_pred CCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEe
Q 009814 443 MGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLN 522 (524)
Q Consensus 443 ~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vq 522 (524)
+||+. +.+.++ +.+.+-.. ......|.|+|.|.+. . +..+.+.+..+..+.++.. +.+++.||
T Consensus 125 ~G~~~------v~~~~~-~~lf~~~~--~~~~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~-~~~i~GvQ 187 (209)
T PRK13146 125 MGWNT------VDQTRD-HPLFAGIP--DGARFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVA-RDNLFATQ 187 (209)
T ss_pred cChHH------eeeCCC-ChhccCCC--CCCEEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEe-cCCEEEEE
Confidence 88762 233233 21221111 1223357899988532 1 2356677766655677654 57999999
Q ss_pred c
Q 009814 523 Y 523 (524)
Q Consensus 523 y 523 (524)
|
T Consensus 188 F 188 (209)
T PRK13146 188 F 188 (209)
T ss_pred c
Confidence 8
No 52
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.50 E-value=2.6e-13 Score=133.71 Aligned_cols=174 Identities=19% Similarity=0.279 Sum_probs=109.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHH-HcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~-~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
++|+++ .|.... .-.++.+||+ .+|+++... |... ..+.++|+|++|||++..
T Consensus 1 ~~v~Vl-~~~G~n-~~~d~~~a~~~~~G~~~~~v----~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGSN-CDRDMARALRDLLGAEPEYV----WHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCcC-hHHHHHHHHHhcCCCeEEEE----ecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 368888 465432 4567789998 888765432 3211 236688999999998531
Q ss_pred --------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH--hccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCC
Q 009814 376 --------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 445 (524)
Q Consensus 376 --------g~eg~i~air~are~~iP~LGICLGmQll~ie--~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Gg 445 (524)
.....+.+++.+.++++|++|||.|+|+|+-+ +.+.+.. ..+.+|.
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~---n~~~~~~--------------------- 111 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTR---NASLKFI--------------------- 111 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEE---cCCCcEE---------------------
Confidence 12456777888888999999999999999964 3332210 1111110
Q ss_pred cccccceeeEeccCCcccccccC-Ccc-ee-eeeeccccccChhhHHhhhcCCeE---EEEEeCCCCeEEEEEECC-C-c
Q 009814 446 TMRLGSRRTYFQIKDCKSAKLYG-NRT-FI-DERHRHRYEVNPDMIARLENAGLS---FTGKDETSQRMEVWTFNY-K-I 517 (524)
Q Consensus 446 tmrLg~~~v~l~~g~s~~~~iYg-~~~-~I-~erhrHrYeVn~~~v~~l~~~Gl~---~sg~~~dg~~VE~iE~~~-h-p 517 (524)
-....+.+.+..+.+.+.|+ +.. .+ ..-|+|||++|+++++.+++.|+. +++.++||...++.++.+ | .
T Consensus 112 ---~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 112 ---CRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred ---EEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 00011122221133333341 111 12 235899999999999999999977 666779998888888876 3 6
Q ss_pred EEEEec
Q 009814 518 AVLLNY 523 (524)
Q Consensus 518 ~f~vqy 523 (524)
++.+|+
T Consensus 189 ~~g~~~ 194 (219)
T PRK03619 189 VLGMMP 194 (219)
T ss_pred EEEEeC
Confidence 777776
No 53
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.50 E-value=6.2e-13 Score=129.11 Aligned_cols=171 Identities=20% Similarity=0.221 Sum_probs=102.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC-Cc--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG-- 376 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~-rg-- 376 (524)
|+++ +|+ .. +-.++.++|+..|+++.+. . .+ +.+.++|||++|||... ..
T Consensus 2 i~~~-d~~-~~-~~~~i~~~l~~~G~~v~~~------~-----------~~-------~~l~~~d~iiipG~~~~~~~~~ 54 (205)
T PRK13141 2 IAII-DYG-MG-NLRSVEKALERLGAEAVIT------S-----------DP-------EEILAADGVILPGVGAFPDAMA 54 (205)
T ss_pred EEEE-EcC-Cc-hHHHHHHHHHHCCCeEEEE------C-----------CH-------HHhccCCEEEECCCCchHHHHH
Confidence 6777 587 22 4478999999999877764 1 11 35678999999985321 11
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcc--ccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCCcccc
Q 009814 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR--SVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTMRL 449 (524)
Q Consensus 377 ---~eg~i~air~are~~iP~LGICLGmQll~ie~gr--~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~GgtmrL 449 (524)
..+..+.++.+.++++|+||||+|||+|+.++.. .+-++.. .+..|..... +...+| .
T Consensus 55 ~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~---------l~g~v~~~~~~~~~~~~~------~ 119 (205)
T PRK13141 55 NLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGL---------LPGRVRRFPPEEGLKVPH------M 119 (205)
T ss_pred HHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccce---------EEEEEEEcCCCCCCcccE------e
Confidence 1356788888888999999999999999976411 1100000 0111111100 011122 3
Q ss_pred cceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 450 g~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
|.+.+.+.++ +.+.+.+.....+ .+.|+|.+.+ ..++.+.+.+.++..++++.. +.++|.|||
T Consensus 120 g~~~i~~~~~-~~l~~~l~~~~~v--~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~i~GvQf 182 (205)
T PRK13141 120 GWNQLELKKE-SPLLKGIPDGAYV--YFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDNVFGAQF 182 (205)
T ss_pred cCccceeCCC-ChhhhCCCCCCEE--EEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCCEEEEeC
Confidence 3445555444 4344433212223 3568888843 245778888877756888865 669999998
No 54
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.49 E-value=2.6e-13 Score=137.91 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC----chhHHHHHHHHHHHc
Q 009814 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR----GVQGKILAAKYAREH 390 (524)
Q Consensus 315 SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r----g~eg~i~air~are~ 390 (524)
|-+++++.+|+.+.. .+++++. +. ..+.+..+||||+|||+-+. -..-....++.|++.
T Consensus 24 ~Yv~~l~~aG~~vvp----i~~~~~~---~~----------l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~ 86 (273)
T cd01747 24 SYVKFLESAGARVVP----IWINESE---EY----------YDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALER 86 (273)
T ss_pred HHHHHHHHCCCeEEE----EEeCCcH---HH----------HHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHh
Confidence 457899999986543 2444321 01 12457889999999998543 122233455666665
Q ss_pred C-----CCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCccccc
Q 009814 391 R-----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAK 465 (524)
Q Consensus 391 ~-----iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~ 465 (524)
+ +|+||||||||+|+.++|+++..+....+ + +...|+. +.++.. ...| +..-.+.+.+
T Consensus 87 ~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~-~---~~~~~l~-~t~~~~----~s~l--------F~~~p~~l~~ 149 (273)
T cd01747 87 NDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEA-T---NSALPLN-FTEDAL----QSRL--------FKRFPPDLLK 149 (273)
T ss_pred hhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCcc-c---cceEEEE-Eccccc----cChh--------hhcCCHHHHH
Confidence 4 89999999999999999986522111111 0 1111211 111000 0000 0000000000
Q ss_pred ccCCcceeeeeeccccccChhhHHh---hhcCCeEEEEEeCC--CC-eEEEEEECCCcEEEEec
Q 009814 466 LYGNRTFIDERHRHRYEVNPDMIAR---LENAGLSFTGKDET--SQ-RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 466 iYg~~~~I~erhrHrYeVn~~~v~~---l~~~Gl~~sg~~~d--g~-~VE~iE~~~hp~f~vqy 523 (524)
... ...+ -.|+|+|.|.++..+. | ...+++.+.+.| |. .|.++|+.++|+|+|||
T Consensus 150 ~l~-~~~~-~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQF 210 (273)
T cd01747 150 SLA-TEPL-TMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQW 210 (273)
T ss_pred HHh-cccH-HHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCceEEEec
Confidence 010 1112 2589999998865432 2 234688888766 32 36899999999999998
No 55
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.49 E-value=2.9e-13 Score=134.76 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=85.0
Q ss_pred hccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeee
Q 009814 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~ 433 (524)
.+.++|||||+||+.+. -+....+.++.+.+.++|+||||+|||+|+.++|++|...+. ..|
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~--g~e----------- 117 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPA--GRE----------- 117 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCC--CCc-----------
Confidence 35678999999999763 235567888999999999999999999999999999853211 011
Q ss_pred eCCCCCcCCCCCcccccceeeEeccCCcccccccCC-cceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEE
Q 009814 434 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWT 512 (524)
Q Consensus 434 l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~-~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE 512 (524)
.|.+++.+.+. .....++.+ ...+.-.+.|+++|. .+ ..|+++.+.+.++. +++++
T Consensus 118 ---------------~G~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~d~v~-----~l-p~~~~~la~s~~~~-iqa~~ 174 (237)
T PRK09065 118 ---------------SGTVTVELHPA-AADDPLFAGLPAQFPAHLTHLQSVL-----RL-PPGAVVLARSAQDP-HQAFR 174 (237)
T ss_pred ---------------cceEEEEEccc-cccChhhhcCCccCcEeeehhhhhh-----hC-CCCCEEEEcCCCCC-eeEEE
Confidence 12233333321 111112211 111222355776653 23 46899999988876 99999
Q ss_pred ECCCcEEEEec
Q 009814 513 FNYKIAVLLNY 523 (524)
Q Consensus 513 ~~~hp~f~vqy 523 (524)
+++ ++|+|||
T Consensus 175 ~~~-~i~gvQf 184 (237)
T PRK09065 175 YGP-HAWGVQF 184 (237)
T ss_pred eCC-CEEEEEe
Confidence 987 5999998
No 56
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.47 E-value=9.2e-13 Score=151.41 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=67.5
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHH---hccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK---LLKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~---~l~~~DGIllpGGf 372 (524)
.++|.+|+.|.++. +++.+.|+.. |..+.+. ..+++.. .+... .+..+|||||+|||
T Consensus 81 ~~~iLlIDnyDSfT---yNL~~~L~~~~g~~~~Vv------~nd~~~~----------~~~~~~~~~~~~~d~IVlSPGP 141 (918)
T PLN02889 81 FVRTLLIDNYDSYT---YNIYQELSIVNGVPPVVV------RNDEWTW----------EEVYHYLYEEKAFDNIVISPGP 141 (918)
T ss_pred cceEEEEeCCCchH---HHHHHHHHHhcCCCEEEE------eCCCCCH----------HHHHhhhhcccCCCEEEECCCC
Confidence 37899999887332 5788999888 8776554 2222110 00101 14579999999999
Q ss_pred CCCchh---HH-HHHHHHHHHcCCCEEEEhHhHHHHHHHhcccccccc
Q 009814 373 GNRGVQ---GK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (524)
Q Consensus 373 G~rg~e---g~-i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~ 416 (524)
|.|... |. ++.++.+ .++|+||||||||+|+.+||++|.+.+
T Consensus 142 G~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~ 187 (918)
T PLN02889 142 GSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAP 187 (918)
T ss_pred CCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCC
Confidence 998432 22 2333322 479999999999999999999997644
No 57
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.46 E-value=1.5e-12 Score=124.22 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=88.8
Q ss_pred hccCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCee
Q 009814 359 LLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 432 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi 432 (524)
.+.++|||++|||+.+. ......+.++++.++++|+||||+|||+++.++|+++...+.. .
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~--~----------- 109 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG--W----------- 109 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc--c-----------
Confidence 46789999999998764 2356788899999999999999999999999999988543221 0
Q ss_pred eeCCCCCcCCCCCcccccceeeEeccCCcccccccCC-cceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEE
Q 009814 433 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVW 511 (524)
Q Consensus 433 ~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~-~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~i 511 (524)
..|.+++.+.+. .....++.+ ...+...+.|+++|.. + ..|+++.+.+.++. ++++
T Consensus 110 ---------------~~g~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~~~v~~-----l-p~~~~~la~~~~~~-v~~~ 166 (188)
T cd01741 110 ---------------EIGWFPVTLTEA-GKADPLFAGLPDEFPVFHWHGDTVVE-----L-PPGAVLLASSEACP-NQAF 166 (188)
T ss_pred ---------------eeEEEEEEeccc-cccCchhhcCCCcceEEEEeccChhh-----C-CCCCEEeecCCCCC-cceE
Confidence 112233343332 111122211 1223335778888753 3 45889999988776 9999
Q ss_pred EECCCcEEEEec
Q 009814 512 TFNYKIAVLLNY 523 (524)
Q Consensus 512 E~~~hp~f~vqy 523 (524)
+.+ .+++.+||
T Consensus 167 ~~~-~~~~g~Qf 177 (188)
T cd01741 167 RYG-DRALGLQF 177 (188)
T ss_pred Eec-CCEEEEcc
Confidence 998 79999998
No 58
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.46 E-value=1.2e-12 Score=126.62 Aligned_cols=81 Identities=35% Similarity=0.507 Sum_probs=61.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc---
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg--- 376 (524)
|+++ ||+. . +..++.++|+..|+++.+. .. + +.+.++|+||+||| |+++
T Consensus 2 i~vi-d~g~-g-n~~~~~~~l~~~g~~v~~~------~~-----------~-------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGA-G-NLRSVANALKRLGVEAVVS------SD-----------P-------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCC-C-hHHHHHHHHHHCCCcEEEE------cC-----------h-------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 6873 2 7889999999999876553 11 1 35678999999885 4431
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 377 ----~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
..+..+.++.+++.++|+||||+|||+|+.++
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~ 89 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESS 89 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhc
Confidence 12556788888899999999999999999874
No 59
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.44 E-value=5.1e-12 Score=126.17 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=105.8
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
+.+|.++-.|. .. .-.++.+.|+..|..+.+. ....++. .| +.+.++||+||+||+++..
T Consensus 7 ~~~vlvi~h~~-~~-~~g~l~~~l~~~g~~~~v~----~~~~~~~-------~p-------~~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 7 KRPVLIVLHQE-RS-TPGRVGQLLQERGYPLDIR----RPRLGDP-------LP-------DTLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CceEEEEecCC-CC-CChHHHHHHHHCCCceEEE----eccCCCC-------CC-------CcccccCEEEEECCCCCCC
Confidence 45777775554 22 4456788888888877764 1111110 11 3467899999999998751
Q ss_pred -----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccc
Q 009814 377 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (524)
Q Consensus 377 -----~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~ 451 (524)
+...++.|+.+.+.++|+||||+|||+|+.++|++|.+.+... .++| .
T Consensus 67 d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~---------------------~e~G------~ 119 (239)
T PRK06490 67 DPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGR---------------------VEIG------Y 119 (239)
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCC---------------------Cccc------e
Confidence 3456788888899999999999999999999999995532110 0112 2
Q ss_pred eeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+++.+.+....... . ...+ .|-|++.+ .+ ..|+.+.+.+.+.. ++++++.+ +++.+||
T Consensus 120 ~~i~~~~~~~~~~~-~--~~~~--~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~-~v~g~Qf 177 (239)
T PRK06490 120 YPLRPTEAGRALMH-W--PEMV--YHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGD-NAWGLQF 177 (239)
T ss_pred EEeEECCCcccccC-C--CCEE--EEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCC-CEEEEee
Confidence 23333222011100 0 1112 35576652 22 35788889887776 99999976 6999998
No 60
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.43 E-value=8.1e-13 Score=145.48 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=100.1
Q ss_pred eEEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~ 374 (524)
.+|.+++.|. +| +++.+.|+..|+.+.+.-+..+ .+. ..+.+ .++|+||++||||.
T Consensus 2 ~~iLiIDn~d----sft~nl~~~lr~~g~~v~V~~~~~~--~~~---------------~~~~l~~~~~~~IIlSpGPg~ 60 (531)
T PRK09522 2 ADILLLDNID----SFTYNLADQLRSNGHNVVIYRNHIP--AQT---------------LIERLATMSNPVLMLSPGPGV 60 (531)
T ss_pred CeEEEEeCCC----hHHHHHHHHHHHCCCCEEEEECCCC--Ccc---------------CHHHHHhcCcCEEEEcCCCCC
Confidence 4789997665 55 4788999999987776521110 000 01222 46889999999999
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceee
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v 454 (524)
|...+....+......++|+||||||||+|+.+||++|...+...+ ..+... .|.+
T Consensus 61 p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~~~~~~--------G~~~~i------~~~~---------- 116 (531)
T PRK09522 61 PSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILH--------GKASSI------EHDG---------- 116 (531)
T ss_pred hhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeCCceee--------eeEEEE------eecC----------
Confidence 8433333233222345899999999999999999999954211000 000000 0100
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
. ++...+- .+..+. +-|++.|. .+ ..++++.+. .|+ .++++++++.|++.|||
T Consensus 117 ----~-~lf~~~~-~~~~v~--~~Hs~~v~-----~l-P~~l~vlA~-sd~-~v~ai~~~~~~i~GVQF 169 (531)
T PRK09522 117 ----Q-AMFAGLT-NPLPVA--RYHSLVGS-----NI-PAGLTINAH-FNG-MVMAVRHDADRVCGFQF 169 (531)
T ss_pred ----C-ccccCCC-CCcEEE--Eehheecc-----cC-CCCcEEEEe-cCC-CEEEEEECCCCEEEEEe
Confidence 0 1111111 122333 44777763 23 458999986 455 49999999999999998
No 61
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.43 E-value=2.6e-12 Score=124.04 Aligned_cols=170 Identities=21% Similarity=0.216 Sum_probs=98.7
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~-- 377 (524)
|+++ +|+ .. +-.++.++|+.+|+++.+. +.. +.+.++|+|++||| |.+..
T Consensus 1 i~i~-d~g-~~-~~~~~~~~l~~~g~~v~v~------~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYG-MG-NLRSVANALERLGAEVIIT------SDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCC-CC-hHHHHHHHHHHCCCeEEEE------cCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 4667 587 22 6678899999999877765 210 34678999999875 44421
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh--ccccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCCccc
Q 009814 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTMR 448 (524)
Q Consensus 378 -----eg~i~air~are~~iP~LGICLGmQll~ie~--gr~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~Ggtmr 448 (524)
.+..+.++.+.++++|+||||+|||+|+.++ ++.+-++. -.+..|..... ..+.+++|++
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg---------~~~g~v~~~~~~~~~~~~~~G~~-- 121 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLG---------LIPGKVVRFPASEGLKVPHMGWN-- 121 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCC---------CcceEEEECCCCCCceEEEeccc--
Confidence 3567889999999999999999999999763 11100000 00111211110 0112344543
Q ss_pred ccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 449 Lg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.+.+++.++..+- ....-.|.|+|.|.+. ..+.+.+.+.++..+.+ ...+.+++.|||
T Consensus 122 ----~v~~~~~~~lf~~l~---~~~~v~~~Hs~~v~~~-------~~~~~la~s~~~~~~~~-~~~~~~i~GvQF 181 (198)
T cd01748 122 ----QLEITKESPLFKGIP---DGSYFYFVHSYYAPPD-------DPDYILATTDYGGKFPA-AVEKDNIFGTQF 181 (198)
T ss_pred ----eEEECCCChhhhCCC---CCCeEEEEeEEEEecC-------CcceEEEEecCCCeEEE-EEEcCCEEEEEC
Confidence 344433312222221 1222347899988531 12556777766653444 356789999998
No 62
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.42 E-value=6.9e-12 Score=121.70 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=100.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|.++ +|+ .. +-.++.++|+.+|+.+.+. +. + +.+.++|||++|||....
T Consensus 1 ~~~~v~-~~~-~~-~~~~~~~~l~~~G~~~~~~------~~-----------~-------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYG-VG-NLRSVSKALERAGAEVVIT------SD-----------P-------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECC-Cc-cHHHHHHHHHHCCCeEEEE------CC-----------H-------HHHccCCEEEECCCCCHHHH
Confidence 368888 586 33 4478899999999876653 11 1 346789999999853322
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC--CCCCCeeeeCCCCCcCCCCCcccccc
Q 009814 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP--NTKNPCVIFMPEGSKTHMGGTMRLGS 451 (524)
Q Consensus 376 --g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~--~~~~pVi~l~~e~~~~~~GgtmrLg~ 451 (524)
..+...+.++.+.++++|+||||+|||+|+.++.. .+.... -....+.........++ .|.
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~---------g~~~~~lg~~~g~v~~~~~~~~~~~------~g~ 118 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEE---------GGGVRGLGLFPGRVVRFPAGVKVPH------MGW 118 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhcc---------CCCCCCcceeeEEEEEcCCCCCCCe------ecc
Confidence 23456788899999999999999999999976421 000000 00111111110011122 244
Q ss_pred eeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.+..+ +.+.+-.. ...+ .+.|+|.+.+ ..++.+.+.+.++..+++.... .|++.+||
T Consensus 119 ~~v~~~~~-~~l~~~l~-~~~~--~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~-~~~~gvQf 178 (200)
T PRK13143 119 NTVKVVKD-CPLFEGID-GEYV--YFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCN-DNVFGTQF 178 (200)
T ss_pred eEEEEcCC-ChhhccCC-CcEE--EEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEc-CCEEEEeC
Confidence 44554444 32221111 2222 3568887753 2346788888776545555554 59999998
No 63
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.40 E-value=4.9e-12 Score=126.80 Aligned_cols=119 Identities=17% Similarity=0.241 Sum_probs=79.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++.-. .++.++.++|+++|+++... . .| +.+.++|||+|||||++.
T Consensus 2 m~igVLa~q----G~~~e~~~aL~~lG~ev~~v------~-----------~~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLALQ----GSFNEHIAALRRLGVEAVEV------R-----------KP-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEeCC----CchHHHHHHHHHCCCcEEEe------C-----------CH-------HHhccCCEEEeCCCHHHHHH
Confidence 579999633 48889999999999876543 1 11 467899999999998763
Q ss_pred c---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhc------cccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCc
Q 009814 376 G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA------RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (524)
Q Consensus 376 g---~eg~i~air~are~~iP~LGICLGmQll~ie~g------r~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggt 446 (524)
. ..+..+.++.+.++++|+||||+|||+|+-..- +..+|.-+..-.. ......+..+....+++|+||+
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 1 136788888888889999999999999985531 1112222211000 0122344445445678999997
No 64
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.39 E-value=1.2e-11 Score=123.19 Aligned_cols=165 Identities=17% Similarity=0.159 Sum_probs=104.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
.+|.++ ...... ...++.++|+..|..+.+. .....+.. . ..+.++|||||+||+...
T Consensus 3 ~~ilvi-qh~~~e-~~g~i~~~L~~~g~~~~v~----~~~~~~~~------~--------~~~~~~d~lii~Ggp~~~~d 62 (234)
T PRK07053 3 KTAVAI-RHVAFE-DLGSFEQVLGARGYRVRYV----DVGVDDLE------T--------LDALEPDLLVVLGGPIGVYD 62 (234)
T ss_pred ceEEEE-ECCCCC-CChHHHHHHHHCCCeEEEE----ecCCCccC------C--------CCccCCCEEEECCCCCCCCC
Confidence 356666 454433 5667899999999776654 11111110 0 135679999999998642
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccc
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg 450 (524)
-+...++.++.+.+.++|+||||+|||+++.++|++|.. ....|+ |
T Consensus 63 ~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~---~~~~e~--------------------------G 113 (234)
T PRK07053 63 DELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYP---GGQKEI--------------------------G 113 (234)
T ss_pred CCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEec---CCCCeE--------------------------e
Confidence 345778899999999999999999999999999999843 111121 2
Q ss_pred ceeeEeccCC--cccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 451 SRRTYFQIKD--CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 451 ~~~v~l~~g~--s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
..++.+.+.. ..+..+- ......|-|++.+. + ..|....+.++... ++++... ..++.+||
T Consensus 114 ~~~i~~t~~g~~~pl~~~~---~~~~~~~~H~d~~~------l-P~ga~~La~s~~~~-~qaf~~g-~~~~g~Qf 176 (234)
T PRK07053 114 WAPLTLTDAGRASPLRHLG---AGTPVLHWHGDTFD------L-PEGATLLASTPACR-HQAFAWG-NHVLALQF 176 (234)
T ss_pred EEEEEEeccccCChhhcCC---CcceEEEEeCCEEe------c-CCCCEEEEcCCCCC-eeEEEeC-CCEEEEee
Confidence 2222222210 0011110 11222466776652 2 35788888887665 8999985 57999998
No 65
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.37 E-value=1.2e-11 Score=122.36 Aligned_cols=173 Identities=23% Similarity=0.305 Sum_probs=104.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC--C
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~--r 375 (524)
++|+++ +|.... ...++.++|+.+|+.+... |... ..+.++|+|++|||+.. .
T Consensus 1 ~~v~Vl-~~~G~n-~~~~~~~al~~~G~~~~~i----~~~~-------------------~~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGTN-CDRDTVYALRLLGVDAEIV----WYED-------------------GSLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCcC-cHHHHHHHHHHCCCeEEEE----ecCC-------------------CCCCCCCEEEECCCCccccc
Confidence 368888 464322 3456789999999876543 3221 12567899999999843 1
Q ss_pred ---c----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH--hccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCc
Q 009814 376 ---G----VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (524)
Q Consensus 376 ---g----~eg~i~air~are~~iP~LGICLGmQll~ie--~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggt 446 (524)
+ .....+.++.+.++++|+||||.|+|+|+.+ +.+.+.. ..+.+|... |.
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~---n~~~~~~~~------------------~~ 114 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLP---NDSLRFICR------------------WV 114 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceee---cCCCceEEE------------------eE
Confidence 1 2346678888888999999999999999964 4433211 112222110 00
Q ss_pred ccccceeeEeccCCcccccccCC-c---ceeeeeeccccccChhhHHhhhcCCe-EEEEEe----------CCC--CeEE
Q 009814 447 MRLGSRRTYFQIKDCKSAKLYGN-R---TFIDERHRHRYEVNPDMIARLENAGL-SFTGKD----------ETS--QRME 509 (524)
Q Consensus 447 mrLg~~~v~l~~g~s~~~~iYg~-~---~~I~erhrHrYeVn~~~v~~l~~~Gl-~~sg~~----------~dg--~~VE 509 (524)
.+++.+..+.+.+-+.. . ..|. -..|||.++++.+++|++.+. .+...+ +|| ..|.
T Consensus 115 ------~~~v~~~~~~~~~~~~~g~~~~~pi~-H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~ 187 (227)
T TIGR01737 115 ------YLRVENADTIFTKNYKKGEVIRIPIA-HGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIA 187 (227)
T ss_pred ------EEEECCCCChhhccCCCCCEEEEEeE-cCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHc
Confidence 00111100111111110 1 1122 133699999998888887775 444434 676 4688
Q ss_pred EEEECCCcEEEEec
Q 009814 510 VWTFNYKIAVLLNY 523 (524)
Q Consensus 510 ~iE~~~hp~f~vqy 523 (524)
+|+.++.++|.+|+
T Consensus 188 ~i~~~~~~~~g~~~ 201 (227)
T TIGR01737 188 GIVNERGNVLGMMP 201 (227)
T ss_pred ccCCCCCCEEEEec
Confidence 99999999999997
No 66
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.36 E-value=1.5e-11 Score=122.92 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=81.8
Q ss_pred hccCCCEEEECCCCCCCch------------h-HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC
Q 009814 359 LLKGADGILVPGGFGNRGV------------Q-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~rg~------------e-g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~ 425 (524)
.+.++|||||+||+++... . ....+++.+.++++|+||||+|||+|+.++|++|.+ . ...|
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~--~g~e--- 121 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-T--YGEP--- 121 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-C--CCCc---
Confidence 3567899999999976411 1 123466777789999999999999999999999853 1 1111
Q ss_pred CCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCC-cceeeeeeccccccChhhHHhhhcCCeEEEEEeCC
Q 009814 426 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET 504 (524)
Q Consensus 426 ~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~-~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d 504 (524)
.|.+++.+.+. .....++.+ .......|-|++.|. .+ ..|+++.+.+.+
T Consensus 122 -----------------------~G~~~v~l~~~-g~~~~l~~~~~~~~~~~~~H~d~V~-----~l-p~~~~vlA~s~~ 171 (242)
T PRK07567 122 -----------------------VGAVTVSLTDA-GRADPLLAGLPDTFTAFVGHKEAVS-----AL-PPGAVLLATSPT 171 (242)
T ss_pred -----------------------CccEEEEECCc-cCCChhhcCCCCceEEEeehhhhhh-----hC-CCCCEEEEeCCC
Confidence 12233333321 111112110 112333466876653 23 468999999877
Q ss_pred CCeEEEEEECCCcEEEEec
Q 009814 505 SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 505 g~~VE~iE~~~hp~f~vqy 523 (524)
.. ++++++.+ ++++|||
T Consensus 172 ~~-vqa~~~~~-~~~gvQf 188 (242)
T PRK07567 172 CP-VQMFRVGE-NVYATQF 188 (242)
T ss_pred CC-EEEEEeCC-CEEEEEe
Confidence 65 99999976 5999997
No 67
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.35 E-value=9.6e-11 Score=126.90 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=63.0
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
+++||++ ..-.+.-.|..-.++|+..|+++. |+++-. + +.+.++|+|++|||+...
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~~~~------~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGAELV------FFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCCEEE------EeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 3799998 343343345666789988776543 444311 0 235588999999997431
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
...+..+.++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 224678999999999999999999999998554
No 68
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.34 E-value=1.4e-11 Score=135.58 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=105.9
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
..+|+++ ||+ .. +-.|+.++|+.+|+++.+. .. | +.+.++|+||+|||. +.+
T Consensus 6 ~~~i~ii-DyG-~G-N~~sl~~al~~~G~~v~~v------~~-----------~-------~~l~~~D~lIlpG~g-s~~ 57 (538)
T PLN02617 6 DSEVTLL-DYG-AG-NVRSVRNAIRHLGFTIKDV------QT-----------P-------EDILNADRLIFPGVG-AFG 57 (538)
T ss_pred CCeEEEE-ECC-CC-CHHHHHHHHHHCCCeEEEE------CC-----------h-------hhhccCCEEEECCCC-CHH
Confidence 4689999 698 43 7789999999999876432 21 1 356789999998843 432
Q ss_pred h-------hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhc--cccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCC
Q 009814 377 V-------QGKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGG 445 (524)
Q Consensus 377 ~-------eg~i~air~are~~iP~LGICLGmQll~ie~g--r~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~Gg 445 (524)
. .+..+.++.+.+.++|+||||+|||+|+.++. +.+.|+.- .+..|..+.. ..+.+|+||
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~---------l~G~v~~~~~~~~~~vp~iGw 128 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGV---------IPGVVGRFDSSNGLRVPHIGW 128 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCccc---------ccceEEECCccCCCCCCeecc
Confidence 1 35678889888999999999999999997641 11211110 1122333211 135688898
Q ss_pred cccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeC-CCCeEEEEEECCCcEEEEec
Q 009814 446 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 446 tmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~-dg~~VE~iE~~~hp~f~vqy 523 (524)
+. +.+..+ +.+.+-+. ...+ .|.|+|.+.+. + ..+..+.+.+. ++..+++++.. +++.|||
T Consensus 129 ~~------V~~~~~-spL~~~l~-~~~v--y~vHSy~v~~~--p---~~~~~v~a~~~~g~~~IaAI~~g--nI~GVQF 190 (538)
T PLN02617 129 NA------LQITKD-SELLDGVG-GRHV--YFVHSYRATPS--D---ENKDWVLATCNYGGEFIASVRKG--NVHAVQF 190 (538)
T ss_pred eE------EEecCC-ChhHhcCC-CcEE--EEEeEEEEEec--C---CCCcEEEEEEccCCCcEEEEEeC--CEEEEEc
Confidence 72 223333 22222222 2222 47899986331 1 22333444444 23469999974 8999998
No 69
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.2e-11 Score=132.18 Aligned_cols=177 Identities=23% Similarity=0.249 Sum_probs=104.5
Q ss_pred CCeEEEEEeccCCCcchH-HHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc---CCCEEEECC
Q 009814 296 EPVRIAMVGKYTGLSDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK---GADGILVPG 370 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day-~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~---~~DGIllpG 370 (524)
.++++.+++.|. +| .+|.++|..+ +....+.+...|.-+ ++|+.+. .+|+|+|..
T Consensus 13 ~rl~~LlID~YD----SyTfNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgP 72 (767)
T KOG1224|consen 13 PRLRTLLIDNYD----SYTFNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGP 72 (767)
T ss_pred hheeEEEEeccc----chhhhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecC
Confidence 458999999886 55 5888888766 455556556666432 2344443 489999999
Q ss_pred CCCCCchhHHHHHHHHHHH--cCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccc
Q 009814 371 GFGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 448 (524)
Q Consensus 371 GfG~rg~eg~i~air~are--~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggtmr 448 (524)
|||.|....-+..+-...+ +.||+||||||||.|+++.|+.|.- ++- ..|--+.-+ .| .++.+
T Consensus 73 GPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~---~n~------p~HGrvs~i-----~~-~~~~~ 137 (767)
T KOG1224|consen 73 GPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH---ANE------PVHGRVSGI-----EH-DGNIL 137 (767)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec---CCC------cccceeeeE-----Ee-cCcEE
Confidence 9999932222222222222 3599999999999999999998831 111 001000000 11 11211
Q ss_pred ccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 449 Lg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+. | +..=|....... |+ |+-.+|+.-++.+. .-.+-.+.+|.++..+.+++.|+|.+||
T Consensus 138 -------f~-g---i~sg~~~~fK~~-RY-HSL~in~~pid~l~---il~t~~ddng~ilMsi~~~~fPhfG~qy 196 (767)
T KOG1224|consen 138 -------FS-G---IPSGRNSDFKVV-RY-HSLIINSLPIDLLP---ILWTIYDDNGHILMSIMHSSFPHFGLQY 196 (767)
T ss_pred -------Ec-c---CCCCCcccceeE-Ee-EEEEecCCchhhhc---ceeEeecCCceEEEEeeccCCCccceee
Confidence 11 1 111121112222 45 88889986555431 1223344556699999999999999999
No 70
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.30 E-value=3.6e-11 Score=116.29 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=57.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~-- 377 (524)
|+++ +|+ . .+-.++.++|+..|+++.+. .. + +.+.++|+|++|| +|++..
T Consensus 1 ~~~~-~~~-~-gn~~~l~~~l~~~g~~v~v~------~~-----------~-------~~l~~~d~lii~G-~~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYG-V-GNLGSVKRALKRVGAEPVVV------KD-----------S-------KEAELADKLILPG-VGAFGAAM 52 (196)
T ss_pred CEEE-ecC-C-cHHHHHHHHHHHCCCcEEEE------cC-----------H-------HHhccCCEEEECC-CCCHHHHH
Confidence 4677 576 2 27788999999999887765 11 0 3467899999988 444421
Q ss_pred ---hHH-HHHH-HHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 378 ---QGK-ILAA-KYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 378 ---eg~-i~ai-r~are~~iP~LGICLGmQll~ie~ 408 (524)
... ++.+ +.+.+.++|+||||+|||+|+-++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~ 88 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERS 88 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhcc
Confidence 110 3444 777888999999999999999763
No 71
>PRK05665 amidotransferase; Provisional
Probab=99.28 E-value=2e-10 Score=114.86 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=81.3
Q ss_pred hccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeee
Q 009814 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~ 433 (524)
.+.++||||++||+.+. -+....+.++.+.++++|+||||+|||+|+.++|++|...+.+ -|
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G--~e----------- 120 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQG--WG----------- 120 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCC--cc-----------
Confidence 35679999999998764 3456678888888999999999999999999999999542211 01
Q ss_pred eCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEE
Q 009814 434 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTF 513 (524)
Q Consensus 434 l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~ 513 (524)
.|.+++.+.+...+. .-. ...+.--|-|+-+| ..+ ..|.+..+.++... +++++.
T Consensus 121 ---------------~G~~~~~~~~~~~~~-~~~--~~~~~~~~~H~D~V-----~~L-P~ga~~La~s~~~~-~q~~~~ 175 (240)
T PRK05665 121 ---------------VGIHRYQLAAHAPWM-SPA--VTELTLLISHQDQV-----TAL-PEGATVIASSDFCP-FAAYHI 175 (240)
T ss_pred ---------------cceEEEEecCCCccc-cCC--CCceEEEEEcCCee-----eeC-CCCcEEEEeCCCCc-EEEEEe
Confidence 111122221110000 000 11122235566444 333 45888889887766 999987
Q ss_pred CCCcEEEEec
Q 009814 514 NYKIAVLLNY 523 (524)
Q Consensus 514 ~~hp~f~vqy 523 (524)
.+ +++++||
T Consensus 176 ~~-~~~g~Qf 184 (240)
T PRK05665 176 GD-QVLCFQG 184 (240)
T ss_pred CC-CEEEEec
Confidence 65 6999997
No 72
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.25 E-value=7.1e-10 Score=120.20 Aligned_cols=89 Identities=25% Similarity=0.286 Sum_probs=61.6
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
+++||++- .-.+.--|..=+++|+..|+++ .|+++-. . +.+.++|+|++|||+..-
T Consensus 244 ~~~Iava~-d~afnFy~~~~~~~L~~~g~~~------~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVAQ-DQAFNFYYQDNLDALTHNAAEL------VPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEEe-chhhceeHHHHHHHHHHCCCEE------EEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 47999983 3323223445568888776543 3444310 0 235588999999998542
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.-.++.++++.+.+++.|+||||-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124678899999999999999999999999543
No 73
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.24 E-value=2.3e-10 Score=110.92 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHHHHHHH
Q 009814 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAR 388 (524)
Q Consensus 314 ~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-----g~eg~i~air~ar 388 (524)
.++.++|+.+|.++.+. ++.. + +.+.++|+|++|||++.. ...+..+.++.+.
T Consensus 17 ~~~~~~l~~~g~~~~~~----~~~~-----------~-------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~ 74 (200)
T PRK13527 17 DALKRALDELGIDGEVV----EVRR-----------P-------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKI 74 (200)
T ss_pred HHHHHHHHhcCCCeEEE----EeCC-----------h-------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHH
Confidence 46778888888766543 2211 1 356789999999998864 2235688899888
Q ss_pred HcCCCEEEEhHhHHHHHHHhccc
Q 009814 389 EHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 389 e~~iP~LGICLGmQll~ie~gr~ 411 (524)
++++|+||||+|||+|+-++++.
T Consensus 75 ~~~~pilGIC~G~Qll~~~~gg~ 97 (200)
T PRK13527 75 EEGLPILGTCAGLILLAKEVGDD 97 (200)
T ss_pred HCCCeEEEECHHHHHHHhhhcCC
Confidence 89999999999999999998874
No 74
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.22 E-value=2.1e-10 Score=110.58 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=64.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++.-. .+|.+..++|+.+|..+... +. | +.+.++|||++|||++..
T Consensus 2 m~~~i~~~~----g~~~~~~~~l~~~g~~~~~~------~~-----------~-------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLALQ----GAVREHLAALEALGAEAVEV------RR-----------P-------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEcc----cCHHHHHHHHHHCCCEEEEe------CC-----------h-------hHhccCCEEEECCCChHHHH
Confidence 467777423 37888889999988776543 21 1 356789999999998653
Q ss_pred c---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 376 G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 376 g---~eg~i~air~are~~iP~LGICLGmQll~ie~gr~ 411 (524)
. .....+.++.+.++++|+||||+|+|+|+-++++.
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~ 92 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGY 92 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccC
Confidence 1 12345788888999999999999999999888774
No 75
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.7e-10 Score=112.27 Aligned_cols=163 Identities=21% Similarity=0.217 Sum_probs=98.4
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcC-CceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag-~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
+|.|+ +++. ....-|.+.++..| ....+. .| +.+ .+ . -...++|||+|+|||-+.
T Consensus 3 ~ilIl-d~g~--q~~~li~r~~re~g~v~~e~~---~~-~~~-~~--~------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILIL-DFGG--QYLGLIARRLRELGYVYSEIV---PY-TGD-AE--E------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEE-eCCC--cHhHHHHHHHHHcCCceEEEE---eC-CCC-cc--c------------ccccCCCEEEEcCCCCCCcc
Confidence 57787 5653 24456788999888 444332 11 110 00 0 123567999999999653
Q ss_pred -c--hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccce
Q 009814 376 -G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (524)
Q Consensus 376 -g--~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~ 452 (524)
+ ..-....|+.+...++|+||||+|||+|+-++|++|.. ++..|++. .
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~---~~~~E~G~--------------------------~ 111 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVER---GPKREIGW--------------------------T 111 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEec---cCCCccce--------------------------E
Confidence 3 44556666666666667999999999999999999943 22244422 2
Q ss_pred eeEeccCCc-ccccccCCcc-eeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 453 RTYFQIKDC-KSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 453 ~v~l~~g~s-~~~~iYg~~~-~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
++.+.++.+ +..-+- ... .+. |-|+ +.+.++ ..|+++.|.+++-. ++++++. .+++.|||
T Consensus 112 ~v~~~~~~~~l~~gl~-~~~~~v~--~sH~-----D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~~~gvQF 173 (198)
T COG0518 112 PVELTEGDDPLFAGLP-DLFTTVF--MSHG-----DTVVEL-PEGAVVLASSETCP-NQAFRYG-KRAYGVQF 173 (198)
T ss_pred EEEEecCccccccCCc-cccCccc--cchh-----CccccC-CCCCEEEecCCCCh-hhheecC-CcEEEEee
Confidence 222221000 000000 011 132 4453 444444 46899999877665 9999999 99999998
No 76
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.21 E-value=1.3e-10 Score=108.61 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=106.0
Q ss_pred EEEEEeccCCCcchHHHHHHHH-HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCc
Q 009814 299 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL-~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg 376 (524)
.|.+++.|.++. +++.+.| -..|+.+.+. ..++++.+ + ..+++++++++.|||.|.
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~Vy------RNDeiTV~-------------El~~~NP~~LliSPGPG~P~ 77 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEVY------RNDELTVE-------------ELKRKNPRGLLISPGPGTPQ 77 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEEE------ecCcccHH-------------HHhhcCCCeEEecCCCCCCc
Confidence 477888897543 6777777 4556666654 33334321 2 246899999999999996
Q ss_pred hhHH-HHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 VQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 ~eg~-i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..|. .++|++.- -++|+||||+|.|+|.-+||+++. .+. | -+++-.. ..+.|-+ . -.+-
T Consensus 78 DsGIs~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~-----~a~-~------~i~HGK~-S~i~~D~-~-----~~~G 137 (223)
T KOG0026|consen 78 DSGISLQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIV-----RSP-F------GVMHGKS-SMVHYDE-K-----GEEG 137 (223)
T ss_pred cccchHHHHHHhC-CCCceeeeehhhhhhhhhhCcEEe-----ccC-c------ceeeccc-cccccCC-c-----cccc
Confidence 4443 34566554 589999999999999999999983 221 1 0111000 0111111 0 0011
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCc-EEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKI-AVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp-~f~vqy 523 (524)
+-.+ + .+..+..|+ |+.+...++++ ...|+++++.+||- +.+.+++.+. +-.|||
T Consensus 138 ~f~g------~--~q~~~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQf 193 (223)
T KOG0026|consen 138 LFSG------L--SNPFIVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQF 193 (223)
T ss_pred cccC------C--CCCeEEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceee
Confidence 1111 1 122233355 77766555554 45799999999986 9999999988 889998
No 77
>PRK00784 cobyric acid synthase; Provisional
Probab=99.21 E-value=4.9e-10 Score=122.61 Aligned_cols=85 Identities=26% Similarity=0.357 Sum_probs=61.2
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHH-cCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~-ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
+++||++ +|.... ++ .=+++|+. +|+++... ++. +.+.++|||+||||+-..
T Consensus 251 ~~~i~v~-~~~~a~-~f-~nl~~l~~~~g~~v~~~------s~~------------------~~l~~~d~lilpGg~~~~ 303 (488)
T PRK00784 251 ALRIAVI-RLPRIS-NF-TDFDPLRAEPGVDVRYV------RPG------------------EPLPDADLVILPGSKNTI 303 (488)
T ss_pred ceEEEEE-eCCCcC-Cc-cChHHHhhcCCCeEEEE------CCc------------------cccccCCEEEECCccchH
Confidence 4799999 565433 44 33678887 88765443 321 245688999999998542
Q ss_pred -ch-----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -GV-----QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -g~-----eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.. .++.+.++.+.+++.|+||||.|||+|+-.+
T Consensus 304 ~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 304 ADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 21 2467888888899999999999999999654
No 78
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.17 E-value=7.7e-10 Score=120.71 Aligned_cols=305 Identities=20% Similarity=0.252 Sum_probs=156.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCC---------Ccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldl---------g~y 74 (524)
||||| .-|+.||=++++.|.+.|+.+|++|...|== .|+= ..+|+.||+|.|-.. --+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 57776 5599999999999999999999999988832 1221 245667776653110 012
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCc
Q 009814 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (524)
Q Consensus 75 erf~~~~~~~~~n-----~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eigg 149 (524)
++---+-+....+ +..|+.+.....++ |.... .+..-+.|++.+.+++ .++|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111211111 11122111111111 11100 1233566777777775 368999999988
Q ss_pred ccccc----CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcC-CCcccEEEEecCCCCCc
Q 009814 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (524)
Q Consensus 150 tvgdi----es~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~-Gi~pd~lv~R~~~~l~~ 224 (524)
..-|+ +.....+-++.+.. .++.| + -+...+-. --+-+.++.++.. ++...++|+-...+-..
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV----~-d~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV----A-DIDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE----E-eCCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 77664 12233444444433 24444 1 11111111 1222344444443 36677888755443211
Q ss_pred chhccc---cccCCCCCCCeeecC-CCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhc-CCCCCeE
Q 009814 225 NVKGKL---SQFCHVPEQNIITLY-DVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVR 299 (524)
Q Consensus 225 ~~r~Ki---sLf~~v~~~~Vi~i~-dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~-~~~~~v~ 299 (524)
..+..+ .-++.+ .|++.. -.++. +|. .++.++...+. .....++
T Consensus 201 ~~~~~~~~l~e~~gi---pvLG~ip~~~~l--l~~--------------------------~e~~~~~~~~~~~~~~~~~ 249 (475)
T TIGR00313 201 VLKSGIEKLEELTGI---PVLGVLPYDENL--FPE--------------------------EDSLVIQERRSRGNAKSIR 249 (475)
T ss_pred HHHHHHHHHHHhhCC---CEEEEecCCCcC--CCh--------------------------HHhhhHHhhhccCCCCCcE
Confidence 112111 111111 122221 00111 111 11111111111 1122389
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-c--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G-- 376 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g-- 376 (524)
||++ +|.... ++. =.++|+.. + .+.|++.. +.+.++|+|++|||+... .
T Consensus 250 Iav~-~~~~~~-nf~-~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~ 301 (475)
T TIGR00313 250 IGVV-RLPRIS-NFT-DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLY 301 (475)
T ss_pred EEEE-cCCccc-Ccc-ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHH
Confidence 9999 555443 333 35777766 2 22354432 235689999999998443 1
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 377 ---~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
-.++.++++.+.+++.|+||||.|||+|+-.
T Consensus 302 ~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 302 ALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 1356788998888999999999999999954
No 79
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.12 E-value=2.7e-09 Score=106.37 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=78.5
Q ss_pred ccCCCEEEECCCCCCCc--------h--hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCC
Q 009814 360 LKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKN 429 (524)
Q Consensus 360 l~~~DGIllpGGfG~rg--------~--eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~ 429 (524)
+.++|||||+||+.... + ....+.++.+.++++|+||||+|+|+++.++|++|..-+. .|+
T Consensus 43 ~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~---~e~------ 113 (235)
T PRK08250 43 ADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE---KEI------ 113 (235)
T ss_pred ccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC---Cce------
Confidence 56789999999987531 1 3456788888899999999999999999999999943111 121
Q ss_pred CeeeeCCCCCcCCCCCcccccceeeEeccCC---cccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCC
Q 009814 430 PCVIFMPEGSKTHMGGTMRLGSRRTYFQIKD---CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ 506 (524)
Q Consensus 430 pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~---s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~ 506 (524)
|..++.+.+.. .++ .-...+..+. |-|+..+ .+ ..|....+.+....
T Consensus 114 --------------------G~~~v~lt~~g~~d~l~-~~~~~~~~v~--~~H~d~~------~l-P~~a~~LA~s~~~~ 163 (235)
T PRK08250 114 --------------------GYFPITLTEAGLKDPLL-SHFGSTLTVG--HWHNDMP------GL-TDQAKVLATSEGCP 163 (235)
T ss_pred --------------------eEEEEEEccccccCchh-hcCCCCcEEE--EEeccee------cC-CCCCEEEECCCCCC
Confidence 12222222210 011 1111122233 4565432 22 45888888876554
Q ss_pred eEEEEEECCCcEEEEec
Q 009814 507 RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 507 ~VE~iE~~~hp~f~vqy 523 (524)
++++.+.+ +++++||
T Consensus 164 -~qa~~~~~-~~~g~Qf 178 (235)
T PRK08250 164 -RQIVQYSN-LVYGFQC 178 (235)
T ss_pred -ceEEEeCC-CEEEEee
Confidence 89999865 5999997
No 80
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.12 E-value=1.3e-09 Score=104.74 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=62.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC----
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---- 375 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---- 375 (524)
|++.. ++.+|.+..++|+++|+++.+. .+ | +.+.++|+|++|||++..
T Consensus 2 igvl~----~qg~~~e~~~~l~~~g~~~~~v------~~-----------~-------~~l~~~d~liipGG~~~~~~~l 53 (184)
T TIGR03800 2 IGVLA----LQGAVREHARALEALGVEGVEV------KR-----------P-------EQLDEIDGLIIPGGESTTLSRL 53 (184)
T ss_pred EEEEE----ccCCHHHHHHHHHHCCCEEEEE------CC-----------h-------HHhccCCEEEECCCCHHHHHHH
Confidence 56654 3348889999999999876553 21 1 357789999999998763
Q ss_pred -chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
...+....++.+.++++|+||||+|||+|+-++
T Consensus 54 ~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~ 87 (184)
T TIGR03800 54 LDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEI 87 (184)
T ss_pred HHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhh
Confidence 123567788888899999999999999999776
No 81
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.01 E-value=3.2e-08 Score=106.81 Aligned_cols=288 Identities=18% Similarity=0.281 Sum_probs=153.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp-yln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~ 79 (524)
|+=|||||- =|+.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|.. -..
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~~-------------------~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHEA-------------------VAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHHH-------------------HhC
Confidence 566788875 5999999999999999999999999999877 53 43 34432 222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc
Q 009814 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM 157 (524)
Q Consensus 80 ~~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit--~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~ 157 (524)
... .| +=||.. +.|++...+ ...|++|||==|=+-|=+..
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~dg~~~ 95 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLYDGDVS 95 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccccCCCC
Confidence 111 01 112222 223333221 13799999953333453323
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecC-CCccccCCchhhHHHhhc---CCCcccEEEEecCCCC--C----cchh
Q 009814 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--D----DNVK 227 (524)
Q Consensus 158 pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~-~~e~ktkptq~sv~~lrs---~Gi~pd~lv~R~~~~l--~----~~~r 227 (524)
-..+-++++..- ++.| ..+ .|-.---+|=.+++++.. .++.+.++|+-...+. . +...
T Consensus 96 s~adla~~l~~P-----viLV-------v~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~ 163 (433)
T PRK13896 96 STAMVAEALDLP-----VVLV-------VDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDALP 163 (433)
T ss_pred CHHHHHHHHCCC-----EEEE-------EcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhhh
Confidence 344555555432 2222 211 121111123333344444 4899999999876542 1 1111
Q ss_pred ccccccCCCCCCCeeecCCCCccchhhHHHH-Hh----hhHHHHHhhcCCCCCCChhhHHHHHHHHHhhc----------
Q 009814 228 GKLSQFCHVPEQNIITLYDVPNIWHIPLLLR-DQ----KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD---------- 292 (524)
Q Consensus 228 ~KisLf~~v~~~~Vi~i~dvdtiy~vpl~Lr-eq----G~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~---------- 292 (524)
+.+..+..++...-+.+ ++| +|-|..- |. ...+.+-+.++++ .+.+-..
T Consensus 164 ~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~------------~l~~~a~~~~~~~~~~~ 227 (433)
T PRK13896 164 DELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAE------------RLAAVAREPPRPEPPEE 227 (433)
T ss_pred hcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHH------------HHHHHhhCCCCcccccc
Confidence 12344445544333332 344 3322111 10 0111122222221 1111100
Q ss_pred -CCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCC
Q 009814 293 -GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (524)
Q Consensus 293 -~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGG 371 (524)
.....++||+.-|- .+.=-|..=+++|+.+ +++.-. ++ +.. +.+.++|+|++|||
T Consensus 228 ~~~~~~~~iavA~D~-AF~FyY~enl~~L~~~-aelv~f------SP--l~~--------------~~lp~~D~l~lpGG 283 (433)
T PRK13896 228 APATGDPTVAVARDA-AFCFRYPATIERLRER-ADVVTF------SP--VAG--------------DPLPDCDGVYLPGG 283 (433)
T ss_pred ccCCCCCeEEEEEcC-ccceeCHHHHHHHHhc-CcEEEE------cC--CCC--------------CCCCCCCEEEeCCC
Confidence 11123689997432 2332466667888887 544322 22 111 23557899999999
Q ss_pred CCCCc---h--hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 372 FGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 372 fG~rg---~--eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
+-.-. + .+..+.++.+.+++.|++|||-|||+|+
T Consensus 284 ~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~ 322 (433)
T PRK13896 284 YPELHADALADSPALDELADRAADGLPVLGECGGLMALA 322 (433)
T ss_pred chhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhh
Confidence 95531 1 2345888888899999999999999999
No 82
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.00 E-value=2.4e-09 Score=109.82 Aligned_cols=150 Identities=23% Similarity=0.359 Sum_probs=94.3
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECC--CCCCC--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG--GFGNR-- 375 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpG--GfG~r-- 375 (524)
+-++ +|+. .+-.|+..||+|.|+.+... ..| .++.++|.+++|| -||.-
T Consensus 4 v~~l-d~~a--gn~~si~nal~hlg~~i~~v-----------------~~P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLL-DYGA--GNVRSIRNALRHLGFSIKDV-----------------QTP-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEE-ecCC--ccHHHHHHHHHhcCceeeec-----------------cCc-------hhhccCceEeecCcccchHHHH
Confidence 4556 5862 38899999999999886543 122 4577899999999 24432
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCC-----CCCeeeeCCC-CCcCCCCCcc
Q 009814 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNT-----KNPCVIFMPE-GSKTHMGGTM 447 (524)
Q Consensus 376 --g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~-----~~pVi~l~~e-~~~~~~Ggtm 447 (524)
.-.|+.+.++.-.++++||+|||+|+|+|. +.|.|..+.. +.-|-.+..+ ..++|.|||-
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF------------~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNs 124 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQALF------------DGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNS 124 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh------------cccccCCCcCcccccccceecccCCCCcCCcccccc
Confidence 236888999999999999999999999987 5555543322 2333333222 3489999983
Q ss_pred cccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEE
Q 009814 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFT 499 (524)
Q Consensus 448 rLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~s 499 (524)
|.+-.+ + .++|....-.-++.|+| .|++--..++..+++++
T Consensus 125 ------c~v~sd-~---effg~~p~~~~YFVHSy-l~~ek~~~len~~wkia 165 (541)
T KOG0623|consen 125 ------CQVGSD-S---EFFGDVPNRHVYFVHSY-LNREKPKSLENKDWKIA 165 (541)
T ss_pred ------cccCCc-c---cccccCCCceEEEEeee-cccccccCCCCCCceEe
Confidence 222222 2 12211111111488888 55543334556677764
No 83
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=98.97 E-value=4.1e-11 Score=108.89 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHH
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIF 267 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~ 267 (524)
.++||.++++.++|||+.++.++||+++.+|..||++++|+++.+|||| +|+++||++|.|+++|
T Consensus 66 ~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~lR~~G~m~g~I 130 (131)
T PF00988_consen 66 EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKLREKGSMKGVI 130 (131)
T ss_dssp GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHHHHH--EEEEE
T ss_pred ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHHHhcCCceEEE
Confidence 4599999999999999999999999999999999999999999999999 9999999999998765
No 84
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.89 E-value=4.9e-08 Score=97.45 Aligned_cols=78 Identities=27% Similarity=0.323 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC---c------hhH-HH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G------VQG-KI 381 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---g------~eg-~i 381 (524)
.-.++..+|+.+|+++.+. |+.. .... ...+.++|||++||||... . ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~v----~~~~-~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAEDV----WHND-LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEEE----eccC-Cccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 4567889999999877643 3321 1110 0236789999999998531 1 112 66
Q ss_pred HHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 382 LAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 382 ~air~are~~iP~LGICLGmQll~ie 407 (524)
+.++.+.++++|+||||.|+|+|+-+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~ 98 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVEL 98 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHc
Confidence 88899999999999999999999964
No 85
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.83 E-value=9.3e-09 Score=98.59 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=60.1
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++.=++ +...-.++|++.|+++.+. .+| +.+.++|+|++|||++..
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~v-----------------~~~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKLV-----------------KFN-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEEE-----------------CCH-------HHHhCCCEEEECCChHHHHH
Confidence 6789987455 5566789999999875443 122 457899999999997764
Q ss_pred ---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 376 ---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 376 ---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
...+..+.++...+ ++|++|||.|||+|+-
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 12467888888765 6799999999999993
No 86
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.72 E-value=5.2e-08 Score=98.76 Aligned_cols=90 Identities=27% Similarity=0.403 Sum_probs=60.5
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC--C
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 374 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG--~ 374 (524)
+++|+++- +-... .-.+..++|+++|+.+.+. |+. ++.. .+ ..+.++|||++||||+ +
T Consensus 3 ~~kvaVl~-~pG~n-~d~e~~~Al~~aG~~v~~v----~~~--~~~~-----~~-------~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVLR-MEGTN-CEDETVKAFRRLGVEPEYV----HIN--DLAA-----ER-------KSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEEe-CCCCC-CHHHHHHHHHHCCCcEEEE----eec--cccc-----cc-------cchhhCCEEEECCCCCccc
Confidence 35788884 53332 2246689999999886543 322 1110 00 2467899999999984 3
Q ss_pred C---c------h-hHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 375 R---G------V-QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 375 r---g------~-eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
. + + ..+.++++.+.++++|+||||+|+|+|+-
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~ 104 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE 104 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH
Confidence 2 1 1 11237788999999999999999999984
No 87
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.69 E-value=3.4e-08 Score=95.57 Aligned_cols=83 Identities=28% Similarity=0.304 Sum_probs=61.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC----
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---- 375 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---- 375 (524)
|+++ .|.... ++.++.++++..|+++.+. +.. +.+.++|+|+||||+...
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~~~------~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVRYV------EVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEEEE------eCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4556 687555 8999999999999876553 221 125678999999998432
Q ss_pred c--hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 g--~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
. ..+..+.++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 1 23567888888889999999999999998443
No 88
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.57 E-value=1.4e-07 Score=90.34 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHHHHH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKY 386 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-----g~eg~i~air~ 386 (524)
++..-.++|+..|+++... ... +.+.++|||++|||+... ...+..+.++.
T Consensus 9 ~~~e~~~~l~~~g~~v~~v------~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~ 64 (183)
T cd01749 9 DFREHIRALERLGVEVIEV------RTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLRE 64 (183)
T ss_pred CcHHHHHHHHHCCCeEEEE------CCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHH
Confidence 4445558899888776543 210 347789999999997532 12345677888
Q ss_pred HHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 387 AREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 387 are~~iP~LGICLGmQll~ie~gr~ 411 (524)
+.++++|+||||+|||+|+-+++..
T Consensus 65 ~~~~g~PvlGiC~G~qlL~~~~~~~ 89 (183)
T cd01749 65 FIRAGKPVFGTCAGLILLAKEVEDQ 89 (183)
T ss_pred HHHcCCeEEEECHHHHHHHHHhccc
Confidence 8899999999999999999888764
No 89
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.53 E-value=4.4e-07 Score=89.44 Aligned_cols=84 Identities=27% Similarity=0.542 Sum_probs=61.4
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc-CCCEEEECCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGN- 374 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~-~~DGIllpGGfG~- 374 (524)
++|||++ .+-... ...-...|++.+|.++... |... ..+. ++|+|++||||..
T Consensus 2 ~~kvaVi-~fpGtN-~d~d~~~A~~~aG~~~~~V----~~~d-------------------~~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGTN-CDYDMAAAFERAGFEAEDV----WHSD-------------------LLLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCcC-chHHHHHHHHHcCCCceEE----Eeee-------------------cccCCCccEEEEcCCCCcc
Confidence 4689998 564333 5566778999999887654 6431 1234 6899999999854
Q ss_pred ---C-c----hhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 375 ---R-G----VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 ---r-g----~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
| | .+-..+.++.+.+.++|+||||-|+|+|.
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~ 95 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS 95 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH
Confidence 2 2 24456667777778999999999999999
No 90
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.45 E-value=4.3e-07 Score=88.26 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC---c---hhHHHHHHH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G---VQGKILAAK 385 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---g---~eg~i~air 385 (524)
-|..-.++|+.+|+++... ++.. . +.+.++|+|+||||+..- . ..++.++++
T Consensus 12 ~y~e~~~~l~~~G~~v~~~------s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELVPF------SPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEEEE------CCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 4666789999999765442 3210 0 234468999999986541 1 246788999
Q ss_pred HHHHcCCCEEEEhHhHHHHHHH
Q 009814 386 YAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 386 ~are~~iP~LGICLGmQll~ie 407 (524)
.+.++++|++|||.|||+|+-.
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHH
Confidence 9889999999999999999944
No 91
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.45 E-value=4.9e-07 Score=96.00 Aligned_cols=118 Identities=20% Similarity=0.215 Sum_probs=72.9
Q ss_pred cCCCEEEECCCCCC------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeee
Q 009814 361 KGADGILVPGGFGN------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (524)
Q Consensus 361 ~~~DGIllpGGfG~------rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l 434 (524)
.++-||++||||-+ |...-.+ .+-++|+||||.|||+|+-.+|+.|.+ ....|.++. -..
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~i------f~~~vpvLGICYGmQ~i~~~~Gg~V~~---~~~RE~G~~-----eI~ 123 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPAI------FELGVPVLGICYGMQLINKLNGGTVVK---GMVREDGED-----EIE 123 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChhH------hccCCcceeehhHHHHHHHHhCCcccc---ccccCCCCc-----eEE
Confidence 57899999999976 2222211 234799999999999999999999964 333333221 111
Q ss_pred CCCCCcCCCCCcccccceeeEeccCCcccccccCCcc--eeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEE
Q 009814 435 MPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWT 512 (524)
Q Consensus 435 ~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~--~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE 512 (524)
++ +...+..+..+ .. .+--. |+ +.+.++ ..|+++.+++.+.- +-++.
T Consensus 124 v~---------------------~~~~lF~~~~~-~~~~~Vllt--Hg-----dsl~~v-~~g~kv~a~s~n~~-va~i~ 172 (552)
T KOG1622|consen 124 VD---------------------DSVDLFSGLHK-TEFMTVLLT--HG-----DSLSKV-PEGFKVVAFSGNKP-VAGIL 172 (552)
T ss_pred cC---------------------chhhhhhhhcc-cceeeeeec--cc-----cchhhc-cccceeEEeecCcc-eeeeh
Confidence 11 10000111110 11 12112 43 455555 45799999987664 88899
Q ss_pred ECCCcEEEEec
Q 009814 513 FNYKIAVLLNY 523 (524)
Q Consensus 513 ~~~hp~f~vqy 523 (524)
....+.+.+||
T Consensus 173 ~e~kkiyglqf 183 (552)
T KOG1622|consen 173 NELKKIYGLQF 183 (552)
T ss_pred hhhhhhhcCCC
Confidence 99999999998
No 92
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=98.39 E-value=1.6e-05 Score=82.31 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=78.1
Q ss_pred cCCCEEEECCCCCC--C-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeee
Q 009814 361 KGADGILVPGGFGN--R-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (524)
Q Consensus 361 ~~~DGIllpGGfG~--r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~ 433 (524)
.++||+||.|.|-. . -++-..+.+++++++.+|+||||.|+|+++-++++-. +..- ...++
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~~~-~~K~~---------- 165 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KYTL-PEKLS---------- 165 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cCCC-CCcee----------
Confidence 47999999998855 2 2345678888999999999999999999999988841 1000 00011
Q ss_pred eCCCCCcCCCCCcccccceeeEecc-CCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEE
Q 009814 434 FMPEGSKTHMGGTMRLGSRRTYFQI-KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWT 512 (524)
Q Consensus 434 l~~e~~~~~~GgtmrLg~~~v~l~~-g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE 512 (524)
|.+...+.. ...++..+ .+...--|-|--+|+.+-+.. ..|+++-+.|..-. +.++.
T Consensus 166 ----------------Gv~~~~~~~~~~pL~~g~---~d~F~~phSr~~~V~~~~i~~--~~~l~vLA~S~~~g-v~~~~ 223 (302)
T PRK05368 166 ----------------GVFEHRVLDPHHPLLRGF---DDSFLVPHSRYTEVREEDIRA--ATGLEILAESEEAG-VYLFA 223 (302)
T ss_pred ----------------EEEEEEEcCCCChhhcCC---CCccccceeehhhccHHHhcc--CCCCEEEecCCCCC-eEEEE
Confidence 111111100 00111100 011111243434454443332 46899998887766 89999
Q ss_pred ECCCcEEEEec
Q 009814 513 FNYKIAVLLNY 523 (524)
Q Consensus 513 ~~~hp~f~vqy 523 (524)
.+++.++.||+
T Consensus 224 ~~~~r~~~vQg 234 (302)
T PRK05368 224 SKDKREVFVTG 234 (302)
T ss_pred eCCCCEEEEEC
Confidence 98889999996
No 93
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.37 E-value=7.5e-07 Score=97.33 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=52.0
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCC-ceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC-Cc
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~-~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~-rg 376 (524)
+|+++ +..|+.+++++.+. .+. +.|++. | +.+.++|+||+|||.-. .+
T Consensus 2 ~iGvl--------al~sv~~al~~lg~~~~~----vv~~~~-----------~-------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 2 EIGLL--------DIKGSLPCFENFGNLPTK----IIDENN-----------I-------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred EEEEE--------ehhhHHHHHHHhcCCCcE----EEEeCC-----------h-------HHhccCCEEEECCCchhhcc
Confidence 67877 55688889988886 333 334322 1 46789999999998532 12
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 377 --VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 377 --~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
.++..++++.+ ++|+||||.|||||+-.
T Consensus 52 ~l~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 13444444433 89999999999999944
No 94
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=98.09 E-value=1.5e-05 Score=77.34 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=44.7
Q ss_pred HhccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcccc
Q 009814 358 KLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v 412 (524)
++|.++||++++|..-|. -+--.+..++.....++|++|||.|||+++.+.|+.|
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~V 114 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKV 114 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcc
Confidence 468889999999965443 2345566777888889999999999999999998887
No 95
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.06 E-value=8.3e-06 Score=82.76 Aligned_cols=88 Identities=26% Similarity=0.291 Sum_probs=54.4
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++++++--.+ .. .-.....||+.+|+++... |+ +++-.. ...+.++|+|++||||+.-
T Consensus 2 pkV~Vl~~pG-tN-ce~e~~~A~~~aG~~~~~v----~~--~dl~~~------------~~~l~~~~~lvipGGFS~gD~ 61 (259)
T PF13507_consen 2 PKVAVLRFPG-TN-CERETAAAFENAGFEPEIV----HI--NDLLSG------------ESDLDDFDGLVIPGGFSYGDY 61 (259)
T ss_dssp -EEEEEE-TT-EE-EHHHHHHHHHCTT-EEEEE----EC--CHHHTT------------S--GCC-SEEEE-EE-GGGGT
T ss_pred CEEEEEECCC-CC-CHHHHHHHHHHcCCCceEE----EE--Eecccc------------cCchhhCcEEEECCccCcccc
Confidence 5777774334 22 4567789999999887763 22 121100 0357899999999998652
Q ss_pred ---c--h-------hHHHHHHHHHHHc-CCCEEEEhHhHHHHH
Q 009814 376 ---G--V-------QGKILAAKYAREH-RIPYLGICLGMQVAV 405 (524)
Q Consensus 376 ---g--~-------eg~i~air~are~-~iP~LGICLGmQll~ 405 (524)
| . ....++++...++ +.|+||||-|+|+|+
T Consensus 62 l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~ 104 (259)
T PF13507_consen 62 LRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV 104 (259)
T ss_dssp TSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH
Confidence 1 1 1235677777787 999999999999998
No 96
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.96 E-value=4.6e-05 Score=62.65 Aligned_cols=76 Identities=28% Similarity=0.337 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc----hhHHHHHHHHH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYA 387 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg----~eg~i~air~a 387 (524)
.+.+..++|+.+++.+.+. +........ .+...++|++++|||+..+. ...+++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDVV------SPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEEE------cCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 4567889999998555443 333221000 02356899999999988762 26788899999
Q ss_pred HHcCCCEEEEhHhHHHH
Q 009814 388 REHRIPYLGICLGMQVA 404 (524)
Q Consensus 388 re~~iP~LGICLGmQll 404 (524)
.+++.|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 99999999999999999
No 97
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.94 E-value=0.00035 Score=84.77 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=59.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++++++--.+ .. .-.....||+.+|+++... |+. ++.... ..|.+++|+++||||..-
T Consensus 1034 ~~pkv~il~~pG-~N-~~~e~~~Af~~aG~~~~~v----~~~--dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAILREQG-VN-SHVEMAAAFDRAGFDAIDV----HMS--DLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCCeEEE----Eee--cCcCCC------------CChhhCcEEEECCccCCc
Confidence 357888884333 32 5567789999999987432 322 222111 247889999999998552
Q ss_pred ---ch-----------hHHHHHHHHHH-HcCCCEEEEhHhHHHHH
Q 009814 376 ---GV-----------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 ---g~-----------eg~i~air~ar-e~~iP~LGICLGmQll~ 405 (524)
+. ....++++... +.+.+.||||.|+|+|+
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~ 1138 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMS 1138 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHH
Confidence 11 12344455533 56899999999999998
No 98
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.93 E-value=1.3e-05 Score=71.85 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=51.5
Q ss_pred cCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-----hhHH
Q 009814 306 YTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----VQGK 380 (524)
Q Consensus 306 Y~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-----~eg~ 380 (524)
.+......+++.++|+... ++..+.++++... .|+ .++|.+++|||..... -.+
T Consensus 8 ~g~~~~~~~~~~~~L~~~~-------~v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~L~~~g- 66 (114)
T cd03144 8 PGASPGSLKHLAELLRLYL-------AVSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRALNGKG- 66 (114)
T ss_pred CCCCHHHHHHHHHHHhhcc-------ceeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHHHHhhC-
Confidence 3334446677788887654 2223355444221 122 5899999999754431 134
Q ss_pred HHHHHHHHHcCCCEEEEhHhHHHH
Q 009814 381 ILAAKYAREHRIPYLGICLGMQVA 404 (524)
Q Consensus 381 i~air~are~~iP~LGICLGmQll 404 (524)
.++++...+++.|+||||+|-=++
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCccce
Confidence 788888778899999999998776
No 99
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.92 E-value=2.8e-05 Score=74.63 Aligned_cols=82 Identities=26% Similarity=0.456 Sum_probs=60.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcC-CceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag-~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
++|++++ ++.+...-.++|+.++ .++. |+. .| ++|..+||+++|||-...
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e~~------~Vk-----------~~-------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAEVV------EVK-----------RP-------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCceE------EEc-----------CH-------HHhccCcEEEecCccHHHH
Confidence 3677776 3346666678888886 3332 221 12 578899999999997763
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 376 ----g~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
...|+.+.++...++++|+||.|-||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 23588899999999999999999999999833
No 100
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.90 E-value=0.0003 Score=84.41 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=62.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEee---CCCccccccCCChhhhhHHHHhccCCCEEEECCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIP---ACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~---s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf 372 (524)
.+++++|+--.+ .. .-.....||+.+|+++... |+. +.+++.. . .+....|.++|+|++||||
T Consensus 976 ~kpkvaIl~~pG-tN-ce~d~a~Af~~aG~~~~~v----~~~dl~~~~i~~s-~-------~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 976 EKPRVVIPVFPG-TN-SEYDSAKAFEKEGAEVNLV----IFRNLNEEALVES-V-------ETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEEE----EEecCcccccccc-h-------hhhhcccccCcEEEEcCcc
Confidence 357899884333 22 4566788999999885442 332 1122110 0 0001247899999999999
Q ss_pred CC---C-ch----------hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GN---R-GV----------QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~---r-g~----------eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.. + +- ....++++...+.+.|+||||-|+|+|+
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~ 1088 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV 1088 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH
Confidence 65 2 21 2345666666778999999999999998
No 101
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.80 E-value=4.9e-05 Score=74.59 Aligned_cols=92 Identities=22% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCeEEEEEeccCCCcch-HHHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 296 EPVRIAMVGKYTGLSDA-YLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~da-y~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
...+|+++.--....+. ..++.++++.. |+.+..... .+.++ ..+.+.++|+|++|||-=
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~---~~~~~---------------~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHL---FDTED---------------PLDALLEADVIYVGGGNT 91 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEec---cCccc---------------HHHHHhcCCEEEECCchH
Confidence 45789999522222234 35678899999 887664311 01000 125688999999999621
Q ss_pred CCc---h--hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 374 NRG---V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 374 ~rg---~--eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.+. + .+..++++.+.+++.|++|||.|||+|.
T Consensus 92 ~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 92 FNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred HHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 111 1 3567778888888999999999999998
No 102
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.77 E-value=0.00098 Score=80.69 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC--C
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF--G 373 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf--G 373 (524)
.+++++++--.+ .. .-.....||+.+|+++.. .|+. ++.... ..|.+++||++|||| |
T Consensus 1036 ~~pkVaVl~~pG-tN-~~~e~~~Af~~aGf~~~~----V~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAIIREEG-SN-GDREMAAAFYAAGFEPWD----VTMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEE----EEee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 467899984333 32 456778999999988743 2332 222111 247889999999999 5
Q ss_pred CC-c-h----------hHHHHHHHHHH-HcCCCEEEEhHhHHHHH
Q 009814 374 NR-G-V----------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (524)
Q Consensus 374 ~r-g-~----------eg~i~air~ar-e~~iP~LGICLGmQll~ 405 (524)
|- + - ....++++... +.+.++||||.|+|+|+
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~ 1140 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA 1140 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHH
Confidence 53 1 1 22344555555 45899999999999998
No 103
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.72 E-value=3.5e-05 Score=72.26 Aligned_cols=50 Identities=32% Similarity=0.375 Sum_probs=42.4
Q ss_pred hccCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 359 LLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.+.++|+|+||||+-.- ...++.++|+.+.+++.|++|||-|||+|.-.+
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 46789999999998753 124788999999999999999999999999553
No 104
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.67 E-value=0.006 Score=65.85 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=62.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc-CCCEEEECCCCCCC-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~-~~DGIllpGGfG~r- 375 (524)
.+||+.-|- .+.=-|..-++.|+.+|+++.-. ++ +++ +.+. ++|+|.||||+..-
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv~F------SP--L~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENLELLREAGAELVFF------SP--LAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEecc-hhccccHHHHHHHHHCCCEEEEe------CC--cCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 689997322 23335677789999999887644 22 211 2344 69999999998763
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.-+.+.++|+.+.+.++|++|=|-|+-.|.
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~ 337 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLG 337 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeeh
Confidence 235688999999999999999999998877
No 105
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.62 E-value=0.0021 Score=78.25 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++++++--.+ .. .-.....||+.+|+++... |+. ++.... ..|.+++|+++||||..-
T Consensus 1054 ~~p~vail~~pG-~N-~~~e~~~Af~~aGf~~~~v----~~~--dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAILREQG-VN-GDREMAAAFDRAGFEAWDV----HMS--DLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEEECCC-CC-CHHHHHHHHHHhCCCcEEE----EEe--ccccCC------------cchhheeEEEEcCCCCCc
Confidence 357899984333 32 4567788999999885443 332 221111 136788999999998542
Q ss_pred ---c----h-------hHHHHHHHHHH-HcCCCEEEEhHhHHHHH
Q 009814 376 ---G----V-------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 ---g----~-------eg~i~air~ar-e~~iP~LGICLGmQll~ 405 (524)
+ + ....++++... +.+.+.||||.|+|+|+
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLS 1158 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHH
Confidence 1 1 12344555555 67899999999999999
No 106
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.61 E-value=9.5e-05 Score=71.40 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=51.4
Q ss_pred CcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHH
Q 009814 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILA 383 (524)
Q Consensus 309 ~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-----g~eg~i~a 383 (524)
++.++..-.+.|+.+|.+.... ..| +.|.++||+++|||-..- ...|..+.
T Consensus 4 LQG~~~EH~~~l~~lg~~~~~V-----------------r~~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~~ 59 (188)
T PF01174_consen 4 LQGAFREHIRMLERLGAEVVEV-----------------RTP-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFEP 59 (188)
T ss_dssp SSSSHHHHHHHHHHTTSEEEEE------------------SG-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHH
T ss_pred cccChHHHHHHHHHcCCCeEEe-----------------CCH-------HHHccCCEEEECCCcHHHHHHHHHHcCCHHH
Confidence 3446666678888888776322 111 567889999999996552 23578889
Q ss_pred HHHHHHcC-CCEEEEhHhHHHHH
Q 009814 384 AKYAREHR-IPYLGICLGMQVAV 405 (524)
Q Consensus 384 ir~are~~-iP~LGICLGmQll~ 405 (524)
++....++ +|+||.|-||-+|+
T Consensus 60 l~~~~~~g~~Pv~GTCAGlIlLa 82 (188)
T PF01174_consen 60 LREFIRSGSKPVWGTCAGLILLA 82 (188)
T ss_dssp HHHHHHTT--EEEEETHHHHHHE
T ss_pred HHHHHHcCCCceeehhHHHHHhh
Confidence 99888887 99999999999988
No 107
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.56 E-value=0.00024 Score=55.67 Aligned_cols=75 Identities=28% Similarity=0.360 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-h---hHHHHHHHHHH
Q 009814 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-V---QGKILAAKYAR 388 (524)
Q Consensus 313 y~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-~---eg~i~air~ar 388 (524)
+.+..++++..++.+.+. ......... .....++|++++|||+..+. . ...++.++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDVV------SPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEEE------eCCCCcccc-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 356678888888655543 222111000 02356899999999988762 2 56788888888
Q ss_pred HcCCCEEEEhHhHHHH
Q 009814 389 EHRIPYLGICLGMQVA 404 (524)
Q Consensus 389 e~~iP~LGICLGmQll 404 (524)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
No 108
>PHA03366 FGAM-synthase; Provisional
Probab=96.70 E-value=0.0058 Score=74.47 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=61.2
Q ss_pred CCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 294 ~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
+..+++|+|+--.+ .. .-.....||..+|+++... ++ .++... ..|.+++||++||||+
T Consensus 1025 ~~~~prVaIl~~pG-~N-~~~e~~~Af~~aGf~~~~v----~~--~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVLLLPG-CP-GPHALLAAFTNAGFDPYPV----SI--EELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEEE----Ee--ecCCCC-------------CccccceEEEEcCCCC
Confidence 34568999984333 32 5567789999999985543 22 232211 1278889999999997
Q ss_pred CC----c---h-------hHHHHHHHHHH-HcCCCEEEEhH-hHHHHH
Q 009814 374 NR----G---V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (524)
Q Consensus 374 ~r----g---~-------eg~i~air~ar-e~~iP~LGICL-GmQll~ 405 (524)
.- + + +...++++... +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 62 1 1 23345555555 45899999997 999998
No 109
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=96.64 E-value=0.0018 Score=62.24 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=43.7
Q ss_pred ccCCCEEEECCCCCCC-------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcccc
Q 009814 360 LKGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (524)
Q Consensus 360 l~~~DGIllpGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v 412 (524)
..++||+||.|.|=.- -++...+.+.+++++..|.||||-|+|.+.-.+++-.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~ 119 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIK 119 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcc
Confidence 4679999999987642 2346778889999999999999999999998877753
No 110
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.50 E-value=0.0049 Score=61.12 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.3
Q ss_pred ccCCCEEEECCCCCC--------------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 360 LKGADGILVPGGFGN--------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 360 l~~~DGIllpGGfG~--------------rg~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
..++|+|++|||+|. |..+...+.++.+.++++|+..||-|-|+|+-++
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 457999999999874 1245688899999999999999999999998665
No 111
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.46 E-value=0.0054 Score=60.73 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=43.9
Q ss_pred ccCCCEEEECCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh--ccccccc
Q 009814 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNL 415 (524)
Q Consensus 360 l~~~DGIllpGGfG~r--------------g~eg~i~air~are~~iP~LGICLGmQll~ie~--gr~v~gl 415 (524)
+.++|+|++|||++.. .-+..++.++.+.++++|+.+||-|-++|+-+. ||++...
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~kGr~vT~~ 151 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTIG 151 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhccCCeEEcc
Confidence 4579999999998741 134678889999999999999999999988655 4555443
No 112
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.36 E-value=0.011 Score=59.31 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEEeccCCCc---chHH-HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhH
Q 009814 280 LLKEWTSRAEICDGLHEPVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA 355 (524)
Q Consensus 280 ~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~---day~-SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~ 355 (524)
.|..|..+...+-. +..+|+++ .+-... +.|. +..++++..|+.+... .. +++
T Consensus 16 ~l~~~~~~~~~~~~--~~~~v~fI-PtAs~~~~~~~y~~~~~~af~~lG~~v~~l----~~-~~d--------------- 72 (233)
T PRK05282 16 YLEHALPLIAELLA--GRRKAVFI-PYAGVTQSWDDYTAKVAEALAPLGIEVTGI----HR-VAD--------------- 72 (233)
T ss_pred hHHHHHHHHHHHHc--CCCeEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEEe----cc-chh---------------
Confidence 46677777776643 34689999 465322 3343 4678888888874432 11 111
Q ss_pred HHHhccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 356 AWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 356 ~~~~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..+.+.++|+|+++||--.+ ...+..++++.+.++++|+.|.|-|.-+++-
T Consensus 73 ~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~ 128 (233)
T PRK05282 73 PVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGP 128 (233)
T ss_pred hHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhc
Confidence 12468899999999985432 1246778899889999999999999988773
No 113
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.32 E-value=0.0056 Score=58.03 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 362 ~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.+|+|+||||++.. ........++.+.++++|+.|||.|.|+|+-
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 57999999998642 2345778899999999999999999999884
No 114
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=96.30 E-value=0.016 Score=70.31 Aligned_cols=89 Identities=22% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++|+|+--.+ .. .-.....||..+|+++... ++ .++... +.+.+++|++++|||+.-
T Consensus 928 ~~p~VaIl~~pG-~N-~~~e~~~Af~~aGf~~~~v----~~--~dl~~~-------------~~l~~f~glv~~Ggfsy~ 986 (1202)
T TIGR01739 928 PRHQVAVLLLPG-QS-VPHGLLAALTNAGFDPRIV----SI--TELKKT-------------DFLDTFSGLIIGGASGTL 986 (1202)
T ss_pred CCCeEEEEeCCC-CC-CHHHHHHHHHHcCCceEEE----Ee--ccCCCC-------------CchhheEEEEEcCcCCCC
Confidence 457888884333 32 5567789999999885543 22 222110 235678999999998752
Q ss_pred ----ch----------hHHHHHHHHHH-HcCCCEEEEhH-hHHHHH
Q 009814 376 ----GV----------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (524)
Q Consensus 376 ----g~----------eg~i~air~ar-e~~iP~LGICL-GmQll~ 405 (524)
+- ....++++... +.+.+.||||- |+|+|+
T Consensus 987 D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 987 DSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred ccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 11 12334455544 45899999996 999998
No 115
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.26 E-value=0.017 Score=55.01 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=57.5
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCce--eEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~--~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
..|++.. ++.++..-..-++...++. .+++++..+.. | +++.++||+++|||-...
T Consensus 12 ~VIGVLA----LQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT-----------~-------~D~aq~DaLIIPGGEST~ 69 (226)
T KOG3210|consen 12 VVIGVLA----LQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT-----------K-------NDLAQCDALIIPGGESTA 69 (226)
T ss_pred eEEeeee----hhhHHHHHHHHHHHhhccCcceEEEEEEeecC-----------H-------HHHhhCCEEEecCCchhH
Confidence 4566663 5567776666666555554 55555544321 1 578899999999997653
Q ss_pred -c----hhHHHHHHHHHHHcC-CCEEEEhHhHHHHH
Q 009814 376 -G----VQGKILAAKYAREHR-IPYLGICLGMQVAV 405 (524)
Q Consensus 376 -g----~eg~i~air~are~~-iP~LGICLGmQll~ 405 (524)
+ ..|....+.....+. +|+.|.|-||-++.
T Consensus 70 mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS 105 (226)
T KOG3210|consen 70 MSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLS 105 (226)
T ss_pred HHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhh
Confidence 2 235555555555565 89999999999988
No 116
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.26 E-value=0.0061 Score=56.64 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=37.7
Q ss_pred CCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 362 ~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
++|+|+||||++.. ......+.++.+.++++|+.|||-|.++|+
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La 106 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLI 106 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 58999999997742 235678899999999999999999999988
No 117
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=96.21 E-value=0.014 Score=58.65 Aligned_cols=147 Identities=15% Similarity=0.226 Sum_probs=75.0
Q ss_pred HhccCCCEEEECCCCCCCchhHHHHH--HHHHHHc-----CCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCC
Q 009814 358 KLLKGADGILVPGGFGNRGVQGKILA--AKYAREH-----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNP 430 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~rg~eg~i~a--ir~are~-----~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~p 430 (524)
+.++...||+++||--.++.-.++.- -..++++ --|+.|||||+.+|.+-...+-+=++--++.. ...+
T Consensus 107 qklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd----~Ass 182 (340)
T KOG1559|consen 107 QKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVD----VASS 182 (340)
T ss_pred HHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhcccc----cccc
Confidence 45678999999999665664332221 1233443 37999999999999876553321121111110 0000
Q ss_pred eeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhH---HhhhcCCeEEEEEeCCCC-
Q 009814 431 CVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI---ARLENAGLSFTGKDETSQ- 506 (524)
Q Consensus 431 Vi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v---~~l~~~Gl~~sg~~~dg~- 506 (524)
..- ....+.-|||-. .-|.. ++.++- .+-.+ .++|+|.+.|+.. ++|.+ =+.+.-++.|++
T Consensus 183 LqF----~~nvn~~~t~FQ-rFPpE------LLkkL~--~dcLv-mq~Hk~gisp~nF~~N~~Ls~-FFnilTT~~D~~~ 247 (340)
T KOG1559|consen 183 LQF----VGNVNIHGTMFQ-RFPPE------LLKKLS--TDCLV-MQNHKFGISPKNFQGNPALSS-FFNILTTCTDGNS 247 (340)
T ss_pred eee----ecccceeehhHh-hCCHH------HHHHhc--cchhe-eeccccccchhhccCCHHHHH-HHhheeeecCCCc
Confidence 000 011222344321 11111 222221 22222 4889999887422 22211 144555555553
Q ss_pred --eEEEEEECCCcEEEEec
Q 009814 507 --RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 507 --~VE~iE~~~hp~f~vqy 523 (524)
.|..+|-+.+|...+|.
T Consensus 248 k~fvSTv~~~kYPvtgfQW 266 (340)
T KOG1559|consen 248 KTFVSTVESKKYPVTGFQW 266 (340)
T ss_pred eEEEEeecceeccceeeee
Confidence 46667788899999985
No 118
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=95.65 E-value=0.018 Score=53.40 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=37.8
Q ss_pred cCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..+|+++||||++.. .....+..++.+.++++|+.|||-|-++|+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La 108 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLI 108 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHH
Confidence 368999999998543 235678889999999999999999999887
No 119
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.54 E-value=0.077 Score=49.60 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=79.4
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCC
Q 009814 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (524)
Q Consensus 7 tggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~~~~ 86 (524)
..+--.|.||=.+|+.|+..|...|+||-.+-.||--.. .. +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~~------------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----IP------------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----ch------------------------HHH--------
Confidence 334457899999999999999999999999999885421 10 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHh
Q 009814 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (524)
Q Consensus 87 n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ea~rq~ 166 (524)
+ -|...+-+++++.... ...+|+||+-.++.++|. .+.+++
T Consensus 48 ----------------~----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~----~~~~~~-- 88 (169)
T cd02037 48 ----------------R----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE----HLTLAQ-- 88 (169)
T ss_pred ----------------h----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH----HHHHHh--
Confidence 0 0122344555555543 357999999999988761 122221
Q ss_pred hhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCC
Q 009814 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 220 (524)
Q Consensus 167 ~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~ 220 (524)
. ...+..++|. ..+..--+-+...++.+++.++...++|+--..
T Consensus 89 ---~-----~~ad~viiV~--~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~ 132 (169)
T cd02037 89 ---S-----LPIDGAVIVT--TPQEVALDDVRKAIDMFKKVNIPILGVVENMSY 132 (169)
T ss_pred ---c-----cCCCeEEEEE--CCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 0 0112233332 123444445566677888899988888775443
No 120
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=95.54 E-value=0.029 Score=54.79 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=92.4
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~ 83 (524)
||||| .=++.||=.+++.|.+.|+.+|++|...| |.++|--... .|=|.-...++.+....
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56765 46999999999999999999999998865 6666631110 12233334454443322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--Ccc
Q 009814 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (524)
Q Consensus 84 ~~~n~t~g~iy~~v----i~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdi--es~ 157 (524)
. ...++-.|... +..++.| . +--.+.|++.+.+++ .++|+||||-.|.+.+- .++
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11122222111 1111222 1 123467888887764 36899999988766432 111
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCC
Q 009814 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (524)
Q Consensus 158 pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~ 221 (524)
-..+-+++ .+ --++.|.- +. .+. ..-+.-+++.++..|+...++|+....+
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~~---~~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---VK---LGC--INHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---CC---CcH--HHHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 22223333 32 12333331 11 122 2246677888888899998888765433
No 121
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=95.49 E-value=0.06 Score=53.37 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=99.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||-|||||- =.+.||=.+++.|.+.|+.+|++|..+| |.++|-.. ++ ++..|-|.-.+.+..+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~~-~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-TP-EGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-CC-CCCchHHHHHHHHhcCC
Confidence 467899874 3889999999999999999999998877 88888532 22 23345444445555554
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--c
Q 009814 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (524)
Q Consensus 81 ~~~~~~-n---~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgd--i 154 (524)
..+-.. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 432111 1 1111 1111222 111 2367888887764 3789999998772221 0
Q ss_pred CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCC
Q 009814 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (524)
Q Consensus 155 es~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~ 221 (524)
+...+.+.++++ +-. ++.|- -...|. .--|.-+++.+++.|+..-++|+-...+
T Consensus 123 ~~~~~~d~~~~~----~~p-vilV~------~~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 123 DLRPLSEWVVQE----QLP-VLMVV------GIQEGC--INHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred CcccHHHHHHHh----CCC-EEEEE------CCCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 112344444443 211 22221 011233 2345567788889999999999976543
No 122
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.39 E-value=0.023 Score=62.27 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=41.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (524)
||.|.| -|..|..||=..+|-+=++|..+|++|..-|- =.||= -=|||.||+|.
T Consensus 1 ~~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI 54 (486)
T COG1492 1 MKAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI 54 (486)
T ss_pred CCccEE-EeccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE
Confidence 344444 36889999999999999999999999997773 23333 34889999885
No 123
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.24 E-value=0.087 Score=47.81 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=59.1
Q ss_pred EEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEee-eEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCC
Q 009814 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLV-IDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (524)
Q Consensus 299 ~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~-i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~ 374 (524)
+|+++- |..... .+....+.|+.+++++.+.-. -..+.++. ...-.+. ...+.. .++|.|+||||.+.
T Consensus 3 ~v~ill-~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~----g~~i~~~---~~l~~~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 3 KVGILV-ADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSD----GKTLEVD---QTYAGAPSVLFDAVVVPGGAEA 74 (142)
T ss_pred EEEEEE-cCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCC----CcEEecc---eeecCCChhhcCEEEECCCccC
Confidence 456653 443332 456778999999876654310 01111111 0000000 000111 25899999999775
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 375 R----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
. .....++.++.+.++++|+.+||-|-.+|+
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La 109 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLE 109 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHH
Confidence 2 335678889998999999999999999888
No 124
>PRK13768 GTPase; Provisional
Probab=94.93 E-value=0.17 Score=51.08 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|+|+|- +|.||-..+..+...|+..|.+|.++.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 55666665 9999999999999999999999999999984
No 125
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=94.82 E-value=0.045 Score=54.76 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=40.1
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 360 l~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
..++|+|++|||.|. +.-+...+.++.+.++++|+..||-|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 457899999999874 244567889999999999999999999988743
No 126
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=94.75 E-value=0.045 Score=52.06 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=39.5
Q ss_pred cCCCEEEECCC-CCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGG-FGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGG-fG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|++++||| .|.. ..+..+..++++.++++|+..||-|-|+|.
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 48999999999 7764 226788999999999999999999999988
No 127
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.49 E-value=0.1 Score=42.55 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=30.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|+++|.- |.||-.+++.+...|++.|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6677766 99999999999999999999999888
No 128
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=94.30 E-value=0.033 Score=51.12 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=36.4
Q ss_pred ccCCCEEEECCCCCC----Cch-hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~----rg~-eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|+|++|||.+. +.. +-....++++.++++|+.+||-|-.+|+
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~ 85 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLA 85 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHH
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhh
Confidence 346899999999984 223 6678899999999999999999997776
No 129
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.28 E-value=0.082 Score=49.66 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=38.7
Q ss_pred cCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.++|.++||||++.. ..+...+.++.+.+++.|+.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 468999999997532 3456788999999999999999999999883
No 130
>PRK04155 chaperone protein HchA; Provisional
Probab=94.24 E-value=0.07 Score=55.19 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=38.9
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|+|++|||.|. |.-+...+.++++.++++|+..||-|-+++.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 357899999999875 3446678899999999999999999998655
No 131
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.01 E-value=0.32 Score=51.37 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=48.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEccCCccc
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGEV 67 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~-------d~gtmsp-~~hgevfv~~dg~e~ 67 (524)
.|-|||- +|-||=.....+...|+.+|++|.++.+||.-.+ |.-.|.. .+|..||+-..++..
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~ 128 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSG 128 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcc
Confidence 5677775 8999999999999999999999999999998665 4444543 355556666555433
No 132
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.01 E-value=0.12 Score=48.99 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=40.1
Q ss_pred hccCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 359 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
...++|.+++|||.+.. ..+..++.++.+..++.|+.+||-|-++|+-
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 34578999999997753 3467889999998999999999999998873
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=93.63 E-value=0.097 Score=51.75 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.5
Q ss_pred ccCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 360 l~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
+.++|+|+||||++.. ..+...+.++.+.++++|+.+||-|-++|+-
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 3468999999998642 3467889999999999999999999998873
No 134
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=93.55 E-value=0.12 Score=51.73 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.5
Q ss_pred cCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|++|||.|. +.-+...+.++++.++++|+-.||-|-+.+.
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 57899999999775 3446778899999999999999999998665
No 135
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=93.43 E-value=0.12 Score=47.44 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=38.4
Q ss_pred cCCCEEEECCCCC-CC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG-~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.++|.++||||++ .. ..+..++.++.+.++++++.+||-|-.+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 5789999999984 22 2356788899999999999999999999884
No 136
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=93.24 E-value=0.62 Score=53.74 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
||-|||+| .=++.||=.++..|.+.|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57889884 56899999999999999999999999999
No 137
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=93.20 E-value=0.62 Score=45.40 Aligned_cols=105 Identities=18% Similarity=0.071 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccCCC-cc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc
Q 009814 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-SD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (524)
Q Consensus 283 ~W~~lv~~~~~~~~~v~IaiVGkY~~~-~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l 360 (524)
.++.+..... ....+|+++. .... .+ ......++++..|+..... ..++. . .++ +..+.+
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~~---~~~~~--~------~~~----~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVHL---LLIDT--A------NDP----DVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEEE---eccCC--C------CCH----HHHHHH
Confidence 4455555443 2356899985 4322 11 2345678888888876543 11111 0 011 123568
Q ss_pred cCCCEEEECCCCCCC---ch--hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GV--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~--eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|+++||--.+ .+ .+..++++....++.|+.|+|-|..+|.
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~ 128 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMG 128 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhh
Confidence 999999999964322 11 2355666666568999999999999998
No 138
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=93.13 E-value=1.6 Score=45.43 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=68.3
Q ss_pred HHhc--cCCCEEEECCCCCCC-------chhHHHHHHHHHHHcCCCEEEEhHhHHHHH-HHhccccccccCCCCcccCCC
Q 009814 357 WKLL--KGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAV-IEFARSVLNLRDANSTEFDPN 426 (524)
Q Consensus 357 ~~~l--~~~DGIllpGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQll~-ie~gr~v~gl~~a~S~Ef~~~ 426 (524)
++.+ ..+||+||.|.|=.. -++...+.+.+++++..+.|.||.|.|.+. ..+|-+-..++.
T Consensus 91 ~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~--------- 161 (298)
T PF04204_consen 91 FDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE--------- 161 (298)
T ss_dssp HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE---------
T ss_pred HHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC---------
Confidence 4554 469999999987653 235677888999999999999999999955 333322111110
Q ss_pred CCCCeeeeCCCCCcCCCCCcccccceeeEe-ccCCcccccccCCcce-eeeeeccccccChhhHHhhhcCCeEEEEEeCC
Q 009814 427 TKNPCVIFMPEGSKTHMGGTMRLGSRRTYF-QIKDCKSAKLYGNRTF-IDERHRHRYEVNPDMIARLENAGLSFTGKDET 504 (524)
Q Consensus 427 ~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l-~~g~s~~~~iYg~~~~-I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d 504 (524)
-..|.++..+ .+.+.++..+ ...-. -.+||. +++.+-+. +..+|++.+.+++
T Consensus 162 --------------------KlfGVf~~~~~~~~~pLl~Gf-dd~f~~PhSR~t---~i~~~~i~--~~~~L~vLa~s~~ 215 (298)
T PF04204_consen 162 --------------------KLFGVFEHRVLDPDHPLLRGF-DDTFFAPHSRYT---EIDRDDIK--KAPGLEVLAESEE 215 (298)
T ss_dssp --------------------EEEEEEEEEES-SS-GGGTT---SEEEEEEEEEE---E--HHHHC--T-TTEEEEEEETT
T ss_pred --------------------cceeceeeeccCCCChhhcCC-CccccCCccccc---CCCHHHHh--cCCCcEEEeccCC
Confidence 0123333331 1111222211 00111 234442 35554442 3578999999988
Q ss_pred CCeEEEEEECCCcEEEEe
Q 009814 505 SQRMEVWTFNYKIAVLLN 522 (524)
Q Consensus 505 g~~VE~iE~~~hp~f~vq 522 (524)
.. +-.+.-+++..+-+|
T Consensus 216 ~G-~~l~~~~d~r~vfi~ 232 (298)
T PF04204_consen 216 AG-VFLVASKDGRQVFIT 232 (298)
T ss_dssp TE-EEEEEECCCTEEEE-
T ss_pred cc-eEEEEcCCCCEEEEe
Confidence 76 777877776665554
No 139
>PRK14974 cell division protein FtsY; Provisional
Probab=93.12 E-value=1.5 Score=46.51 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|.++| ..|.||=.+++.++..|+.+|++|.++-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4688888 88999999999999999999999999888877
No 140
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=92.93 E-value=2.1 Score=42.16 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|-|.|+++ =-|.||=.+|+.++..|..+|++|-++-+||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 55666554 46889999999999999999999999999994
No 141
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=92.91 E-value=0.2 Score=48.07 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred cCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|.|++|||++.. ..+..+..++.+.++++|+.+||-|-.++.
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 468999999997532 234578899999999999999999999754
No 142
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.91 E-value=0.19 Score=47.95 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=38.0
Q ss_pred ccCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|..+|+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 118 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLA 118 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHH
Confidence 4578999999986642 235678888988899999999999999887
No 143
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=92.86 E-value=0.089 Score=52.30 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=36.4
Q ss_pred cCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..+|-+++.||-... ...-+-.+++.+.++++|+|-||-|.|+|.-
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 578988887776542 2234567899999999999999999999984
No 144
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=92.45 E-value=0.5 Score=47.66 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|+||++|. .|.||=.+|+.++..+...|.||-.+-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 9999999999999999999999999999994
No 145
>PRK10867 signal recognition particle protein; Provisional
Probab=92.35 E-value=2 Score=47.07 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~-g~~v~~~k~dpy 42 (524)
+.|+++| ..|.||=.+++.++..|+.+ |.+|.++-.|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4677887 89999999999999999998 999999999997
No 146
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.20 E-value=0.87 Score=47.06 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=38.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
++.|.|+|. .|-||=..+..++..|..+|++|.++.+||+-+.
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 367888975 8999999999999999999999999999997544
No 147
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.09 E-value=0.23 Score=46.52 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=38.2
Q ss_pred ccCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 360 l~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..++|.|+||||.+.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 4578999999986421 2345788889999999999999999999883
No 148
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.94 E-value=3.2 Score=42.49 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|.++| ..|.||=.+++.|+..|+..|.+|.++-.|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 6788885 89999999999999999999999999999995
No 149
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=91.92 E-value=0.33 Score=45.98 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=39.0
Q ss_pred ccCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|.++||||++.+ ..+..++.++.+.+++..+.+||-|..+++
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 3568999999997654 345688999999999999999999999887
No 150
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=91.75 E-value=0.22 Score=46.70 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.5
Q ss_pred ccCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...+|.|+||||.+.. ..+..+..++.+.++++|+.+||-|.-+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4478999999997653 335678888888889999999999987766
No 151
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.19 E-value=1.1 Score=43.80 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||.|.|+++ =.|.||=.+|+-++..|..+|+||-++-+||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 576666543 46889999999999999999999999999995
No 152
>PHA02518 ParA-like protein; Provisional
Probab=91.08 E-value=0.84 Score=43.50 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.1
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 11 ~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
=-|.||=.+|+.|+..|..+|++|.++-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
No 153
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=91.01 E-value=1.3 Score=43.48 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 9 gv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+-=.|.||=.+|+.|+..|..+|++|-++.+||.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3346789999999999999999999999999994
No 154
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=90.88 E-value=0.34 Score=45.00 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=37.3
Q ss_pred ccCCCEEEECCCCCC---CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGN---RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~---rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...+|.|+||||++. ...+..++.++.+..++.++.+||-|..+++
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 107 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLA 107 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHH
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHh
Confidence 567899999999992 2335677888888888999999999999998
No 155
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.60 E-value=1.6 Score=40.52 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
|.++|. +|-||=..++.++..|+.+|.+|.++..||.-
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 455664 78899999999999999999999999999843
No 156
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=90.40 E-value=11 Score=39.39 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=37.9
Q ss_pred cCCCEEEECCCCCCC-------chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..+||+||.|.|=.. -++...+.+.+++++-...|.||.|.|.+.
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaL 149 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGL 149 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 579999999987552 235677888999999999999999999865
No 157
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=90.39 E-value=0.87 Score=48.82 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=36.9
Q ss_pred cCCCEEEECCCCCCC---chhHH-HHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGK-ILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~-i~air~are~~iP~LGICLGmQll~ 405 (524)
.+++-+|+|||.+.+ .+.+. ...||...+++-=+||||.|--++.
T Consensus 48 ~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 48 SKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred cCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 578999999998765 33344 7889988889999999999988776
No 158
>PRK11249 katE hydroperoxidase II; Provisional
Probab=90.27 E-value=0.91 Score=52.78 Aligned_cols=101 Identities=21% Similarity=0.127 Sum_probs=61.7
Q ss_pred CeEEEEEeccCCCc-chHHHHHHHHHHcCCceeEEee-eEEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLV-IDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~~~-day~SI~~aL~~ag~~~~v~v~-i~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpGGf 372 (524)
..+|+|+- +.... ..+..+.++|+.+|+.+.+.-. .-.+.+..= ..+. + .. ..+. ...+|+|+||||.
T Consensus 597 gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G--~~I~--a-D~--t~~~~~Sv~FDAVvVPGG~ 668 (752)
T PRK11249 597 GRKVAILL-NDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDG--TVLP--I-AA--TFAGAPSLTFDAVIVPGGK 668 (752)
T ss_pred ccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC--CEEe--c-ce--eeccCCccCCCEEEECCCc
Confidence 35788874 44333 3567788999999976654310 011111110 0000 0 00 0011 1258999999986
Q ss_pred CCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
... .....+..++.+.++.+|+..||-|.++|+
T Consensus 669 ~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLa 705 (752)
T PRK11249 669 ANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKA 705 (752)
T ss_pred hhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence 542 234578889999999999999999999998
No 159
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.31 E-value=6.5 Score=36.59 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.++| ..|-||=.+++.+...|...|.+|.++-.|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45555 46889999999999999999999999999984
No 160
>PRK10818 cell division inhibitor MinD; Provisional
Probab=88.90 E-value=4 Score=40.86 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|-|-|++ -=.|.||=.+|+.|+..|..+|.+|-++-+||.
T Consensus 3 kviav~s-~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVTS-GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEEe-CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5555553 457899999999999999999999999999995
No 161
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=88.80 E-value=2.6 Score=38.96 Aligned_cols=154 Identities=20% Similarity=0.264 Sum_probs=80.8
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCccc
Q 009814 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNIT 89 (524)
Q Consensus 10 v~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~~~~n~t 89 (524)
.-.+.||=.+++.|++.|+.+|+||-.+| |.+||- + . .|-|.-.-.+++.... +.+..
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k-------------P~~~~~----~-~--~d~d~~~i~~~~~~~~--~~~~~ 62 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK-------------PVQTGI----E-K--TNSDALLLQNISGTAL--DWDEV 62 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE-------------eeeeCC----C-C--CchHHHHHHHHcCCCC--chhcc
Confidence 46789999999999999999999998853 666752 0 0 1222111112221111 11111
Q ss_pred chHhhH-----HHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH--H
Q 009814 90 TGKIYQ-----SVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE--A 162 (524)
Q Consensus 90 ~g~iy~-----~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~e--a 162 (524)
.+-.|. .+....+ + + |....+|++.+.+++ .++|++|||-.|.... |+.+ .
T Consensus 63 ~~~~~~~~~~p~~~~~~~-~----~-----~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~----~~~~~~~ 120 (166)
T TIGR00347 63 NPYAFALPLSPHIAADQE-G----R-----PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCV----PITEEYT 120 (166)
T ss_pred CCeeeCCCCChHHHHHHh-C----C-----CCCHHHHHHHHHHHH--------hcCCEEEEEcCCcccc----CCCCCCc
Confidence 111110 1111110 0 0 223346777787764 3689999999885443 2211 1
Q ss_pred HHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEE
Q 009814 163 LGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (524)
Q Consensus 163 ~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~ 216 (524)
..++-..++-. ++.|= . ...++ -.=++-+.+.|++.|+..-++|+
T Consensus 121 ~~dl~~~~~~~-vilV~----~--~~~~~--~~~~~~~~~~l~~~~~~i~gvv~ 165 (166)
T TIGR00347 121 TADLIKLLQLP-VILVV----R--VKLGT--INHTLLTVEHARQTGLTLAGVIL 165 (166)
T ss_pred HHHHHHHhCCC-EEEEE----C--CCCcH--HHHHHHHHHHHHHCCCCeEEEEe
Confidence 23344444422 43331 0 01122 23456677788899999888876
No 162
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.98 E-value=6.4 Score=43.06 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=87.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
+.|.+.|- .|.||=.+++.|+..|..+|++|.++-.|||- +|..+-.
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQL---------------------------- 288 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQL---------------------------- 288 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHH----------------------------
Confidence 45667776 99999999999999999999999999999875 1111110
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 009814 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (524)
Q Consensus 82 ~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~e 161 (524)
+.|.+ -+|-.|-++. -.+++.+.|..++. ..+.|+|||...|.-- -....++
T Consensus 289 ----------k~yae---------~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 289 ----------QDYVK---------TIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred ----------HHHhh---------hcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 01111 1343333222 24567777777752 2368999999888833 2334556
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEe
Q 009814 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (524)
Q Consensus 162 a~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R 217 (524)
.++++.....+..++++ +++ -.|.+-....++.++. +.+|.+|.-
T Consensus 341 EL~~~lk~~~PdevlLV-------LsA--Ttk~~d~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 341 EMIETMGQVEPDYICLT-------LSA--SMKSKDMIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred HHHHHHhhcCCCeEEEE-------ECC--ccChHHHHHHHHHhcC--CCCCEEEEE
Confidence 66666555444433222 433 2233334456666665 556777764
No 163
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=87.88 E-value=0.93 Score=46.91 Aligned_cols=47 Identities=30% Similarity=0.359 Sum_probs=38.3
Q ss_pred hccCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 359 LLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...++|.|+||||.+.. .....++.++.+.+++.++.|||-|--+|+
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La 120 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLA 120 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHH
Confidence 45678999999987643 235678889888889999999999998766
No 164
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.75 E-value=4.2 Score=44.56 Aligned_cols=141 Identities=22% Similarity=0.334 Sum_probs=83.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~-~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
.|+++| ..|.||=.+++.++..|+ .+|.+|.++-+|+|-- +.
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~---~a-------------------------------- 143 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP---AA-------------------------------- 143 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch---HH--------------------------------
Confidence 355555 579999999999999987 5899999999999521 00
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcch
Q 009814 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (524)
Q Consensus 82 ~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit--~ei-~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~p 158 (524)
+-+-++.+...|-.+...+.-. .+| ++.++.+. ..++|+|||...|-.. +.. .
T Consensus 144 ---------------~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 144 ---------------IEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred ---------------HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 0011122233343344333211 233 34444442 3578999999999765 222 3
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhc--CCCcccEEEEe
Q 009814 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRG--QGLTPNILACR 217 (524)
Q Consensus 159 f~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs--~Gi~pd~lv~R 217 (524)
-++.++++..-+.++.+++| +.+. | .|.+++..+. ..+..+++|+-
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEEe
Confidence 45777888777766665443 2221 2 2555554433 23566787754
No 165
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=86.99 E-value=7.7 Score=38.70 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=34.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||.|-|+ +-==|.||=.+|..|+..|..+|++|.++-.||--|
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5544443 233467999999999999999999999999999755
No 166
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=86.74 E-value=1.2 Score=44.65 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
||.|.|+|- |+-||=..+..|-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 789999998 8999999999999999999999999993
No 167
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=86.28 E-value=4.6 Score=40.50 Aligned_cols=183 Identities=20% Similarity=0.283 Sum_probs=115.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||-+|||| .=-++||=+++|-|...|+.+|++|...| |.|=|. +....+=|.=.+.|+.++
T Consensus 2 ~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l~~~~~~ 62 (223)
T COG0132 2 MKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS-----EETAENSDALVLQRLSGL 62 (223)
T ss_pred CceEEEEe-CCCCccHHHHHHHHHHHHHhCCCeeEEEC-------------ceeeCC-----CCCCCCchHHHHHHhcCC
Confidence 68899997 45689999999999999999999998887 777664 111114566677888777
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--cCcch
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--IESMP 158 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgd--ies~p 158 (524)
.++. -.++--.|+.-..--..-+.-|+++. .++|..+..+. ..+.|.+|||=-|=+.= -|...
T Consensus 63 ~~~~--~~~~py~f~~P~sPhlAa~~eg~~I~-----~~~l~~~l~~l--------~~~~d~vlVEGAGGl~vPl~~~~~ 127 (223)
T COG0132 63 DLSY--ELINPYRFKEPLSPHLAAELEGRTID-----LEKLSQGLRQL--------LKKYDLVLVEGAGGLLVPLTEEYT 127 (223)
T ss_pred Cccc--ccccceecCCCCCcHHHHhhcCCccc-----HHHHHHHHHhh--------hcccCEEEEeCCCceeeecCCccc
Confidence 7651 12222223322222222222255522 24444444444 33889999996554311 12367
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccc
Q 009814 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKL 230 (524)
Q Consensus 159 f~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~Ki 230 (524)
|..=++|++..+ ++.+++ .| |-.- -|=-|+..+++.||..-++|.-+..+.+.......
T Consensus 128 ~~D~~~~~~lpv----ILV~~~----~L---GtIN--HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~ 186 (223)
T COG0132 128 FADLAVQLQLPV----ILVVGI----KL---GTIN--HTLLTVEALRARGLPLAGWVANGINPELDHYAEIN 186 (223)
T ss_pred HHHHHHHcCCCE----EEEecC----Cc---cHHH--HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHH
Confidence 888888888653 222221 23 2222 45568899999999999999998887776654443
No 168
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.23 E-value=1.2 Score=45.84 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~-g-~~v~~~k~dpyl 43 (524)
+.|.+.|. +|.||=.+++.|+..+..+ | ++|.++.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999864
No 169
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=86.16 E-value=2.9 Score=35.51 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.2
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 7 tggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
-.|-=.|.||=.+|+.++..|..+|.+|-++-.||.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 344456899999999999999999999999999998
No 170
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=85.78 E-value=4.3 Score=41.20 Aligned_cols=107 Identities=19% Similarity=0.120 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccCC-CcchH-HHHHHHHHHcCCceeEEeeeEEeeC-CCccccccCCChhhhhHHHHh
Q 009814 283 EWTSRAEICDGLHEPVRIAMVGKYTG-LSDAY-LSILKALLHASVDLRKKLVIDWIPA-CDLEDATEKENPDAYKAAWKL 359 (524)
Q Consensus 283 ~W~~lv~~~~~~~~~v~IaiVGkY~~-~~day-~SI~~aL~~ag~~~~v~v~i~~i~s-~~le~~~~~~~p~~y~~~~~~ 359 (524)
-|+.+++..... ..+|+++. ..+ ..+.| ....++|+..|+.....+.+ ++ ++. .+| +..+.
T Consensus 16 i~~~~~~lag~~--~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v~~l~i---~~r~~a------~~~----~~~~~ 79 (250)
T TIGR02069 16 ILREFVSRAGGE--DAIIVIIT-SASEEPREVGERYITIFSRLGVKEVKILDV---REREDA------SDE----NAIAL 79 (250)
T ss_pred HHHHHHHHhCCC--CceEEEEe-CCCCChHHHHHHHHHHHHHcCCceeEEEec---CChHHc------cCH----HHHHH
Confidence 466666666442 46899995 322 22233 23467888889853322222 11 111 111 12246
Q ss_pred ccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
+.++|+|++.||-=.+ .-.+...+++.+.+++.|+.|.--|.-+|+
T Consensus 80 l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 80 LSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred HhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 8899999999985333 123566788888889999999999998775
No 171
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=85.77 E-value=1.9 Score=41.28 Aligned_cols=165 Identities=19% Similarity=0.277 Sum_probs=90.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
|=||||| .=.+.||=.+++.|.+.|+.+|.+|...| |+++|.. + |=|.-...++.+..
T Consensus 1 r~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~ 58 (199)
T PF13500_consen 1 RTIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLS 58 (199)
T ss_dssp -EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTC
T ss_pred CEEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCC
Confidence 3467765 45789999999999999999999998777 8888876 1 22444456666655
Q ss_pred CCCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchH
Q 009814 82 LTRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPF 159 (524)
Q Consensus 82 ~~~~--~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf 159 (524)
.+.. +-++-..-....+..++.| ..++ .++|+ .++++ .+.|++|||=-|.+.. ....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~~--~~~~ 117 (199)
T PF13500_consen 59 EPPDDPSPYTFDEPASPHLAAELEG----VDID-----LERII--YKELA--------EEYDVVLVEGAGGLMV--PIFS 117 (199)
T ss_dssp CCHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTTS--ECCT
T ss_pred cccccccccccCcccCHHHHhhccC----Cccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccCc--cccc
Confidence 4322 2222222233344444443 2222 22332 24443 3779999996555542 2222
Q ss_pred HHHHHHhhhhcCCCCEEEEEeeeeeeecCCCcccc-CCchhhHHHhhcCCCcccEEEEecC
Q 009814 160 IEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRST 219 (524)
Q Consensus 160 ~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~kt-kptq~sv~~lrs~Gi~pd~lv~R~~ 219 (524)
-.-..++...++-. +++| . .+...| -=+..+++.++..|+..-++|+-..
T Consensus 118 ~~~n~dia~~L~a~-vIlV-------~--~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~ 168 (199)
T PF13500_consen 118 GDLNADIAKALGAP-VILV-------A--SGRLGTINHTLLTIEALKQRGIRVLGVILNRV 168 (199)
T ss_dssp TEEHHHHHHHHT-E-EEEE-------E--ESSTTHHHHHHHHHHHHHCTTS-EEEEEEEEC
T ss_pred ChHHHHHHHHcCCC-EEEE-------e--CCCCCCHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 12233444444421 3332 2 122222 0123466777888999999888773
No 172
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=84.56 E-value=2.2 Score=43.97 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||.|-|+|- ||-||=..+..|-..|+.+| +|..+|.||-
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h 39 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDT 39 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCC
Confidence 788889988 89999999999999999999 9999999993
No 173
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=84.44 E-value=1.6 Score=44.93 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
|| |.|+| =-|+||=.++++|+..|..+|+||-++-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 67 77887 788999999999999999999999999999987753
No 174
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.42 E-value=3 Score=39.33 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|+-|-|+|- ||-||-..+.-|-..|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 677888887 8999999999999999999999999999876
No 175
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=83.15 E-value=7.3 Score=38.10 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
++++| -.|.||=.+++.++..+...|++|-++-.||--+
T Consensus 2 ~~~~g--~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeC--CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 34444 6899999999999999999999999999998764
No 176
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=82.88 E-value=1.8 Score=43.63 Aligned_cols=39 Identities=36% Similarity=0.604 Sum_probs=34.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
.|.|+||-|= -|+||=.++|+||.-|..+|.||..+-+|
T Consensus 2 ~~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 3789999774 57899999999999999999999998765
No 177
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=82.59 E-value=2.1 Score=43.28 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=39.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
||-|-|+ | =-|+||=.++..|+..|..+|+||-++=+||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6777778 5 78999999999999999999999999999999885
No 178
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.06 E-value=2.2 Score=44.08 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=38.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG 48 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~g 48 (524)
|-|||| ||-||=.++.++..+|+..|.+|..+..|.|--.|--
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~ 44 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERM 44 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCch
Confidence 678996 8999999999999999999999999999999775543
No 179
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=81.49 E-value=2.7 Score=41.82 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=39.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
||-|.|. | =-|.||=.+++-|+..|..+|+||-++-+||-.|.-
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 6778887 5 889999999999999999999999999999998753
No 180
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.48 E-value=2.6 Score=44.49 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=43.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtms 51 (524)
+++||+|| =.|+||=.+||+++..|-+.|.||-.+-.||=-|...-...
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 58999998 47899999999999999999999999999998887655444
No 181
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=81.34 E-value=2.9 Score=42.38 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=40.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~ 47 (524)
||-|.++ | =.|.||=.+|..|+..|..+|+||-++=+||--|.=.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~ 45 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTR 45 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccc
Confidence 6778888 4 8899999999999999999999999999999877633
No 182
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=79.29 E-value=4.8 Score=36.52 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=33.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+|+|| .+.||=.+++-+-+.|+.+|++|...|-.+.
T Consensus 3 ~~~~~---~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 3 GFGTG---TDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEeCC---CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 78998 6699999999999999999999999998876
No 183
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=79.28 E-value=2.8 Score=43.72 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=35.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||+||++|= =|+||=.+||+++..+..+|.+|-++-+||-=|
T Consensus 1 ~r~~~~~GK--GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGK--GGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEES--TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 799999983 377999999999999999999999999999543
No 184
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=79.19 E-value=3 Score=42.04 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=35.1
Q ss_pred cCCCEEEECCC-CCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGG-FGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGG-fG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..+|.|+|||| +|.. ..+-.-+.++..-+.+.++.-||-|--++.
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al 114 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTAL 114 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHH
Confidence 67999999999 7764 335556778888888999999999853433
No 185
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=78.73 E-value=10 Score=37.38 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccCC-CcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc
Q 009814 283 EWTSRAEICDGLHEPVRIAMVGKYTG-LSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (524)
Q Consensus 283 ~W~~lv~~~~~~~~~v~IaiVGkY~~-~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l 360 (524)
-|+.+++... +...+|+++. +.. ..+.| ....++++..|+.....+.+ +. .+.. .+| +..+.+
T Consensus 17 i~~~~~~~ag--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~v~~~~~---~~--~~~a---~~~----~~~~~l 81 (217)
T cd03145 17 ILQRFVARAG--GAGARIVVIP-AASEEPAEVGEEYRDVFERLGAREVEVLVI---DS--REAA---NDP----EVVARL 81 (217)
T ss_pred HHHHHHHHcC--CCCCcEEEEe-CCCcChhHHHHHHHHHHHHcCCceeEEecc---CC--hHHc---CCH----HHHHHH
Confidence 3455555554 2346888884 532 11222 33566777778753322111 11 1100 111 123468
Q ss_pred cCCCEEEECCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg-----~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|+++||-=.+- -.+...+++.+.+++.|+.|.--|.-++.
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 8999999999843321 13677889988889999999999988876
No 186
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=78.52 E-value=3.7 Score=38.46 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|.|+|- +|-||-..+..+...|+.+|++|..+|-|
T Consensus 2 i~i~G~--~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGP--KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 455664 79999999999999999999999999987
No 187
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=77.87 E-value=3.4 Score=38.56 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=31.2
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 10 v~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
.-.|.||=.+|+.|+..|..+|++|-++..||.-+-
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence 357899999999999999999999999999996543
No 188
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=77.71 E-value=3.5 Score=45.17 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=36.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+.|.++| ..|.||=.+++.|+..|+.+|++|.++-.|||=
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4677788 799999999999999999999999999999985
No 189
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.50 E-value=3.9 Score=44.77 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHH-HHHCCCeeEEeeeccccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVL-LKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~l-l~~~g~~v~~~k~dpyln 44 (524)
+.|+++| .+|.||..+++.|+.. +..+|.+|.++-+|+|=.
T Consensus 224 ~vi~lvG--ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVG--PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4577887 6999999999999974 478899999999999753
No 190
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=75.75 E-value=5.4 Score=38.05 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
|.|+| .||-||-..|.+|...|+..|.+|..+.+|=|..-.
T Consensus 2 i~i~G--~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAG--PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 77888 588899999999999999999999999999998754
No 191
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=75.67 E-value=4.9 Score=42.48 Aligned_cols=42 Identities=26% Similarity=0.463 Sum_probs=38.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
+|-|.||| -.|.||=.+++.++..|..+|++|-++-.||+-+
T Consensus 31 ~~ii~v~g--kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 31 TQIIAIYG--KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 36788885 7999999999999999999999999999999964
No 192
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=75.49 E-value=5.6 Score=38.14 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+|-|.||++ -.|.||=.+++.|+..|..+|++|-++-.||+-
T Consensus 17 ~kvI~v~s~-kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSV-KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 477888754 467899999999999999999999999999974
No 193
>CHL00175 minD septum-site determining protein; Validated
Probab=74.68 E-value=6 Score=39.99 Aligned_cols=45 Identities=31% Similarity=0.512 Sum_probs=38.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDA 47 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d~ 47 (524)
|.|.|++| --|.||=.+|+.++..|..+|++|-++-+||- -|++.
T Consensus 16 ~vi~v~s~-KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 16 RIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred eEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhh
Confidence 66777765 46899999999999999999999999999996 45553
No 194
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=74.63 E-value=6 Score=35.31 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=33.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
|.++|. +|.||=..++.++..|..+|.+|-++-.||
T Consensus 2 i~~~Gk--gG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGK--GGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 677885 899999999999999999999999999999
No 195
>PRK07667 uridine kinase; Provisional
Probab=74.58 E-value=6.2 Score=37.95 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
.|.++|+ ||-||-..|..|...|+..|.+|..+.+|.|+.
T Consensus 19 iIgI~G~--~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 5778886 677999999999999999999999999999874
No 196
>PLN02929 NADH kinase
Probab=74.49 E-value=5.6 Score=41.64 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=45.4
Q ss_pred CcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHH
Q 009814 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAR 388 (524)
Q Consensus 309 ~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~ar 388 (524)
+.++...+.+.|+.+|+++... ...++ . +.+.++|-|++-||=| .++.+++.+
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v------~r~~~-~--------------~~~~~~Dlvi~lGGDG-----T~L~aa~~~- 84 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECV------LRNEL-S--------------QPIRDVDLVVAVGGDG-----TLLQASHFL- 84 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEe------ecccc-c--------------cccCCCCEEEEECCcH-----HHHHHHHHc-
Confidence 3345667788899999876432 11111 0 2356789999999854 466788888
Q ss_pred HcCCCEEEEhHh
Q 009814 389 EHRIPYLGICLG 400 (524)
Q Consensus 389 e~~iP~LGICLG 400 (524)
..++|+|||=.|
T Consensus 85 ~~~iPvlGIN~G 96 (301)
T PLN02929 85 DDSIPVLGVNSD 96 (301)
T ss_pred CCCCcEEEEECC
Confidence 788999999988
No 197
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.49 E-value=10 Score=39.39 Aligned_cols=36 Identities=36% Similarity=0.510 Sum_probs=29.6
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLGm 401 (524)
..+|-|++-||=| -.+.+++.+...++|+|||=+|.
T Consensus 63 ~~~dlvi~lGGDG-----T~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 63 GSADMVISIGGDG-----TFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcCCCCCEEEEecCC
Confidence 4689999999854 36778888877899999999986
No 198
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=74.39 E-value=5.5 Score=40.14 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=38.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~-~g~~v~~~k~dpyln~ 45 (524)
+|.|-|+ | =.|+||=.+|..||..|.. +|+||-++-+||-.|-
T Consensus 2 ~~vIav~-~-KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 2 TRKIAIY-G-KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred ceEEEEE-c-CCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 3778888 6 8899999999999999997 6999999999999774
No 199
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=73.52 E-value=6.1 Score=41.52 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|.++| .+|.||=.+++.|+..|+.+|.+|.++-.|+|
T Consensus 115 ~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4677787 99999999999999999999999999999984
No 200
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.91 E-value=11 Score=39.40 Aligned_cols=95 Identities=27% Similarity=0.307 Sum_probs=52.5
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCC----ChhhhhHHHHhccCCCEEEECCC
Q 009814 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----NPDAYKAAWKLLKGADGILVPGG 371 (524)
Q Consensus 298 v~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~----~p~~y~~~~~~l~~~DGIllpGG 371 (524)
.+|+++.+..... .....+.+.|+..|+.+.+.-. .+..+....... +-+.|........++|-|++-||
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDA----EAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeec----hhhhhcccccccccccccccccchhhcccCCCEEEEEcC
Confidence 3699997654321 1234566778888877665310 111110000000 00000000122346899999998
Q ss_pred CCCCchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 372 FGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 372 fG~rg~eg~i~air~are~~iP~LGICLGm 401 (524)
=| .++.+++.+...++|+|||=+|.
T Consensus 82 DG-----T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 82 DG-----TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred CH-----HHHHHHHHhccCCCcEEEEecCC
Confidence 55 46778888888899999999874
No 201
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=71.16 E-value=7.2 Score=39.60 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc------cccCCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP------YLNTDA 47 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp------yln~d~ 47 (524)
||-|.|+| +=-|.||=.++|.++..|+..|.+|.+|-+|| .+|+|.
T Consensus 1 M~~iai~s-~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 1 MKVIAIVS-PKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred CcEEEEec-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 77788774 56688999999999999999999999999999 566653
No 202
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=71.13 E-value=8.2 Score=38.68 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
|-|-|. | =-|.||=.+++.|+..|..+|+||-++-+||=.|.
T Consensus 3 ~iIav~-~-KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 3 LVLAVY-G-KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS 44 (270)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Confidence 677777 6 89999999999999999999999999999995443
No 203
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=71.12 E-value=9.1 Score=37.07 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYL 43 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~-~g~~v~~~k~dpyl 43 (524)
+|-|.||| .-+|.||=.+|+.|+..|-. +|.+|-++-.||.-
T Consensus 35 ~~vi~v~s-~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVTS-SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35566664 45899999999999999975 79999999999975
No 204
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=70.99 E-value=7.5 Score=39.24 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
||-|-|. | =-|.||=.+|..||..|..+|+||-++-+||=.|-
T Consensus 1 m~~iav~-~-KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAIY-G-KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEEe-C-CCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 5667777 5 88999999999999999999999999999998874
No 205
>PRK10037 cell division protein; Provisional
Probab=70.81 E-value=6.7 Score=39.10 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=33.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||- +-...-=-|.||=.+|+.|+..|..+|+||-+|-+||=
T Consensus 1 ~~~-iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 1 MAI-LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CcE-EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 563 33333445789999999999999999999999999994
No 206
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.50 E-value=7.5 Score=42.26 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|.++|- +|.||=.+++.|+..+..+|.+|..+-.|||
T Consensus 207 ~ii~lvGp--tGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQ--TGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 56788884 6999999999999999999999999999998
No 207
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=70.44 E-value=7.6 Score=36.20 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
++|++.| ..|-||+..+..|...|..+|++|.....
T Consensus 1 ~~I~ieG--~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFEG--IDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5788998 67899999999999999999999976654
No 208
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=69.68 E-value=6.8 Score=36.05 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 9 gv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+-=+|.||=.+|+.|+..|..+|++|-.+-+||-
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3457899999999999999999999999999885
No 209
>PRK13236 nitrogenase reductase; Reviewed
Probab=69.63 E-value=8.2 Score=39.79 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=36.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
+-|-| .| =-|+||=.+|+.|+..|..+|+||-++=+||..|-
T Consensus 7 ~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 33444 44 67899999999999999999999999999999864
No 210
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=68.94 E-value=9.4 Score=39.34 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
||-|-|. | =.|+||=.+++.|+..|...|+||-+|-.||-.|-
T Consensus 4 ~~~iai~-~-KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFY-G-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4555554 3 67899999999999999999999999999998665
No 211
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=68.37 E-value=5.6 Score=40.90 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=39.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
|||||-|= -|+||=..++||+.-|..-+-+|-+|--||--|+-
T Consensus 20 KwifVGGK--GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 20 KWIFVGGK--GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eEEEEcCc--CCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 99999763 57899999999999999999999999999998874
No 212
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=68.31 E-value=5.4 Score=36.96 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHHHHHHHH
Q 009814 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYARE 389 (524)
Q Consensus 315 SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-----g~eg~i~air~are 389 (524)
...++|+..|+.+... +-.+.+ ..+..+.+.++|+|++.||-=.+ .-.+..++++.+..
T Consensus 4 ~~~~~f~~~g~~v~~l------~~~~~~----------~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~ 67 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQL------DLSDRN----------DADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYR 67 (154)
T ss_dssp HHHHHHHHCT-EEEEC------CCTSCG----------HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEE------eccCCC----------hHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 3467888888764332 222111 11233567899999999984332 12467889999999
Q ss_pred cCCCEEEEhHhHHH
Q 009814 390 HRIPYLGICLGMQV 403 (524)
Q Consensus 390 ~~iP~LGICLGmQl 403 (524)
++.|+.|.--|.-+
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 99999999999844
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.73 E-value=8 Score=42.26 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~--~~g~~v~~~k~dpy 42 (524)
+.|++.|- +|.||=.+++.|+..+. ..|.+|.++..|||
T Consensus 222 ~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35666665 89999999999998886 67899999999998
No 214
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=66.88 E-value=12 Score=36.01 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=33.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
+.|-|+|. ||-||=..+..|-.+|+.+|++|..+|.|.
T Consensus 7 ~ii~ivG~--sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 7 PLLAIAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred eEEEEECC--CCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 45667774 999999999999999999999999999753
No 215
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=66.78 E-value=11 Score=37.79 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=48.2
Q ss_pred cCCCcchHHHH---HHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC---chhH
Q 009814 306 YTGLSDAYLSI---LKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---GVQG 379 (524)
Q Consensus 306 Y~~~~day~SI---~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---g~eg 379 (524)
|.+..-+..++ +++|+.-.... .++.++++..+..+ | |+ ..-..+++|||.+-| .+.|
T Consensus 6 Yn~~GvSp~~lkhtv~sLr~~~~p~---y~v~~V~~~~Li~E-----p------W~--~~T~lLV~pGGaDlpY~~~l~g 69 (253)
T COG4285 6 YNGLGVSPYSLKHTVRSLRLFAPPY---YAVDRVDAQFLIKE-----P------WE--ETTLLLVFPGGADLPYVQVLQG 69 (253)
T ss_pred eCCCCCChHHHHHHHHHHHhhccch---heEEEeeeheeecC-----c------ch--hceEEEEecCCCCchHHHHhcc
Confidence 44444455555 45565554433 35567788776532 2 43 244578999998776 3344
Q ss_pred HHH-HHHHHHHcCCCEEEEhHhH
Q 009814 380 KIL-AAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 380 ~i~-air~are~~iP~LGICLGm 401 (524)
++. -|+...+++=-+||||-|-
T Consensus 70 ~g~a~i~~yvk~GG~fLGiCAG~ 92 (253)
T COG4285 70 LGTARIKNYVKEGGNFLGICAGG 92 (253)
T ss_pred hhhhhHHHHHhcCCeEEEEeccc
Confidence 443 3444556677999999884
No 216
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=66.55 E-value=11 Score=36.56 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=37.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
-|.|+| =-|.||=.+++.|+..|..+|+||-++-.||-.|.=
T Consensus 2 ~iav~g--KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~ 43 (212)
T cd02117 2 QIAIYG--KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADST 43 (212)
T ss_pred EEEEEC--CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 377884 889999999999999999999999999999998753
No 217
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.47 E-value=17 Score=38.01 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=28.9
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
.++|-+++-||=| ..+.+++.+...++|+|||=+|
T Consensus 67 ~~~Dlvi~iGGDG-----TlL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 67 SSMKFAIVLGGDG-----TVLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred cCcCEEEEEeCcH-----HHHHHHHHhcCCCCcEEEEeCC
Confidence 4689999999855 4677888877789999999887
No 218
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=66.37 E-value=13 Score=37.29 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=35.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
|.|+ | =.|.||=.+|+.|+..|..+|+||-++-.||=.|.
T Consensus 3 i~v~-g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~ 42 (267)
T cd02032 3 LAVY-G-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDS 42 (267)
T ss_pred EEEe-c-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5556 4 88999999999999999999999999999995543
No 219
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.16 E-value=19 Score=34.44 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=51.9
Q ss_pred HhhHHHHhhhhcCCCCCCeeEEccc------ch-----HHHHHHHH-HHhcccCCCCCCCCcEEEEeeCccccccCcch-
Q 009814 92 KIYQSVIDKERKGDYLGKTVQVVPH------IT-----DEIQDWIE-RVAMIPVDGKEGPVDVCVIELGGTIGDIESMP- 158 (524)
Q Consensus 92 ~iy~~vi~ker~g~ylg~tvqviph------it-----~ei~~~i~-~~~~~~~d~~~~~~d~~i~eiggtvgdies~p- 158 (524)
..|...++....-.+.+..++|+.. ++ ....+|+. .+.. ..+||.|+|.+|.- |+-...
T Consensus 21 ~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~------~~~p~~vii~~G~N--D~~~~~~ 92 (204)
T cd01830 21 NRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS------QPGVRTVIILEGVN--DIGASGT 92 (204)
T ss_pred CcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc------CCCCCEEEEecccc--ccccccc
Confidence 5677777655544555666666653 11 24445553 4431 34799999998864 764322
Q ss_pred -----------HHHHHHHhhhhcCCCCEEEEEeeeeee
Q 009814 159 -----------FIEALGQFSYRVGPGNFCLIHVSLVPV 185 (524)
Q Consensus 159 -----------f~ea~rq~~~~~~~~n~~~ih~~~vp~ 185 (524)
|.+.+++|-....+.+.-.|..|+-|+
T Consensus 93 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~ 130 (204)
T cd01830 93 DFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITPF 130 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 677777777766555555566666664
No 220
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=65.33 E-value=6.9 Score=39.15 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=37.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
||-|-|. | =.|.||=.+|+.|+..|..+| ||-++-+||=-|.
T Consensus 2 ~~~iav~-~-KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~ 43 (264)
T PRK13231 2 MKKIAIY-G-KGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADT 43 (264)
T ss_pred ceEEEEE-C-CCCCcHHHHHHHHhcccCCCC-EEEEEeEccCccc
Confidence 5777777 6 899999999999999999999 9999999998654
No 221
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.18 E-value=24 Score=36.79 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=51.4
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEee-CCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIP-ACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~-s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~ 374 (524)
.+|+++.+..... .....+.+.|+..|+.+.+.-...... ...++..... .....+....+|-+++-||=|
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~vi~lGGDG- 79 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCH-----IVNKTELGQYCDLVAVLGGDG- 79 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhcccccccc-----ccchhhcCcCCCEEEEECCcH-
Confidence 3699997665321 123445667888887765531000000 0000000000 000012224689999999854
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGm 401 (524)
.++.+++.+...++|+|||=+|.
T Consensus 80 ----T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 ----TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ----HHHHHHHHhcccCCCEEEEecCC
Confidence 46677887777899999999986
No 222
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=64.79 E-value=9.6 Score=41.28 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
|-|.|+ .-=-|.||=.+|.-|+..|..+|+||-+|-+||--|.
T Consensus 122 ~vIav~-n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~l 164 (405)
T PRK13869 122 QVIAVT-NFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASL 164 (405)
T ss_pred eEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCH
Confidence 444444 2234679999999999999999999999999997554
No 223
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=64.67 E-value=22 Score=36.85 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=51.6
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+|+++.+..... .....+.+.|+..++.+.+... .+..+..... + .+ ...+....+|-|++-||=|
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~----~~~~~~~~~~---~-~~-~~~~~~~~~d~vi~~GGDG-- 74 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEAD----TARNIGLTGY---P-AL-TPEEIGARADLAVVLGGDG-- 74 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecc----hhhhcCcccc---c-cc-ChhHhccCCCEEEEECCcH--
Confidence 3599997765321 1235667778888876554310 1111100000 0 00 0012234689999999854
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGm 401 (524)
....+++.....++|+|||=+|.
T Consensus 75 ---t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 75 ---TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ---HHHHHHHHhcCCCCCEEEEcCCC
Confidence 46677777767799999999886
No 224
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.02 E-value=15 Score=38.03 Aligned_cols=85 Identities=26% Similarity=0.179 Sum_probs=50.9
Q ss_pred eEEEEEeccCCCcchH---HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSDAY---LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~day---~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~ 374 (524)
.+|+++.+... ++. ..+.+.|+..++.+.+.-. .+..+.... +. ..+...++|-+++=||=|
T Consensus 11 ~~i~ii~~~~~--~~~~~~~~i~~~l~~~g~~~~~~~~----~~~~~~~~~-------~~-~~~~~~~~Dlvi~iGGDG- 75 (287)
T PRK14077 11 KKIGLVTRPNV--SLDKEILKLQKILSIYKVEILLEKE----SAEILDLPG-------YG-LDELFKISDFLISLGGDG- 75 (287)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHHCCCEEEEecc----hhhhhcccc-------cc-hhhcccCCCEEEEECCCH-
Confidence 46999976542 232 3456667777776655310 111111000 00 012234689999999854
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGm 401 (524)
.++.+++.+...++|+|||=+|.
T Consensus 76 ----T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 76 ----TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred ----HHHHHHHHhcCCCCcEEEEeCCC
Confidence 35778888877899999999886
No 225
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=63.98 E-value=6 Score=38.10 Aligned_cols=29 Identities=38% Similarity=0.728 Sum_probs=21.4
Q ss_pred cCCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 009814 11 VSGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (524)
Q Consensus 11 ~s~lgkgi~~~s~g~ll~~~--g~~v~~~k~ 39 (524)
.-|=|||-|+|++|..|++. |+||.++.|
T Consensus 9 ytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 9 YTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 34679999999999999985 568888765
No 226
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.15 E-value=26 Score=39.78 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=52.0
Q ss_pred CCeEEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 296 EPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
+..+|+++.+...-. +....+.+.|+..++.+.+.-. .+..+.... +.... ....+.++|-||+-||=|
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~----~~~~~~~~~----~~~~~-~~~~~~~~dlvi~lGGDG 359 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESF----LYNKLKNRL----NEECN-LIDDIEEISHIISIGGDG 359 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEech----hhhhhcccc----ccccc-ccccccCCCEEEEECCcH
Confidence 446899997654211 1233556677777776554310 011111000 00000 001234689999999854
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 374 NRGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 374 ~rg~eg~i~air~are~~iP~LGICLGm 401 (524)
..+.+++.+...++|+|||=+|.
T Consensus 360 -----T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 360 -----TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred -----HHHHHHHHhcCCCCCEEEEcCCC
Confidence 46778887777899999998885
No 227
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=62.69 E-value=12 Score=41.06 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
..|+++| .-|.||=.+++-+++.|+..|++|.++-+|+|
T Consensus 96 ~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3677887 68999999999999999999999999999976
No 228
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=61.67 E-value=11 Score=37.76 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=36.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcccc
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v 412 (524)
.++||++++= |+||++. ++|.. ..+|+.|||----+++...||++
T Consensus 68 ~GvdaiiIaC-f~DPgl~----~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIAC-FSDPGLA----AARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEe-cCChHHH----HHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 4699999998 9998753 44443 36899999999999999999875
No 229
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=61.53 E-value=14 Score=37.13 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=37.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
-|.|.| =-|.||=.+|..|+..|..+|+||-++-+||=.|.
T Consensus 2 ~ia~~g--KGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYG--KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeC--CCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 467774 78999999999999999999999999999998875
No 230
>PRK11670 antiporter inner membrane protein; Provisional
Probab=61.25 E-value=14 Score=39.49 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=36.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
|.|-|+.| =-|.||=.+|+.|+..|...|+||-++-+|||-+-=
T Consensus 108 ~vIaV~S~-KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~ 151 (369)
T PRK11670 108 NIIAVSSG-KGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSI 151 (369)
T ss_pred EEEEEeCC-CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 44555544 367899999999999999999999999999998743
No 231
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=61.22 E-value=18 Score=43.02 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=54.2
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCcee-EEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLR-KKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~-v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++|++-.-+. ..+....-++..+|+... |. -++-|+- . -.|.++-||..+|||..-
T Consensus 1058 ~PkVAilREeGv--Ng~rEMa~af~~AgF~~~DVt------mtDlL~G-~------------~~ld~frGlaf~GGFSYa 1116 (1320)
T KOG1907|consen 1058 APKVAILREEGV--NGDREMAAAFYAAGFETVDVT------MTDLLAG-R------------HHLDDFRGLAFCGGFSYA 1116 (1320)
T ss_pred CCceEEeecccc--ccHHHHHHHHHHcCCceeeee------eehhhcC-c------------eeHhHhcceeeecCcchH
Confidence 569999954442 257778889999998743 22 1222211 0 136678999999999663
Q ss_pred -------ch-------hHHHHHHHH-HHHcCCCEEEEhHhHHHHHH
Q 009814 376 -------GV-------QGKILAAKY-AREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 376 -------g~-------eg~i~air~-are~~iP~LGICLGmQll~i 406 (524)
|+ ++...--.. ....+.=-||||-|.|+|+.
T Consensus 1117 DvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1117 DVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred hhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 22 122111111 12234557999999999993
No 232
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.20 E-value=1.8e+02 Score=29.89 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=84.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~ 82 (524)
.|.+.|- +|.||=.++..|+..|..+|.+|..+-.|||- .| .+++
T Consensus 77 ~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-----------i~----------------~~~q------ 121 (270)
T PRK06731 77 TIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-----------IG----------------TVQQ------ 121 (270)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-----------HH----------------HHHH------
Confidence 5677776 89999999999999999999999999888662 11 1111
Q ss_pred CCCCcccchHhhHHHHhhhhcCCCCCCeeEEcc-cchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccc-ccCcchHH
Q 009814 83 TRDNNITTGKIYQSVIDKERKGDYLGKTVQVVP-HITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG-DIESMPFI 160 (524)
Q Consensus 83 ~~~~n~t~g~iy~~vi~ker~g~ylg~tvqvip-hit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvg-dies~pf~ 160 (524)
.. + .++-+| +.+++ .=.+++.+.+..+++ ..+.|++||.-.|..- | ..-+
T Consensus 122 --------------l~--~-~~~~~~--~~~~~~~~~~~l~~~l~~l~~------~~~~D~ViIDt~Gr~~~~---~~~l 173 (270)
T PRK06731 122 --------------LQ--D-YVKTIG--FEVIAVRDEAAMTRALTYFKE------EARVDYILIDTAGKNYRA---SETV 173 (270)
T ss_pred --------------HH--H-HhhhcC--ceEEecCCHHHHHHHHHHHHh------cCCCCEEEEECCCCCcCC---HHHH
Confidence 00 0 111223 33333 224567777777752 3478999999999863 2 3456
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEe
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R 217 (524)
+.++++.....++. +|+. ++++ .|..=.+.-++.+++ +.+|++|.-
T Consensus 174 ~el~~~~~~~~~~~---~~LV----l~a~--~~~~d~~~~~~~f~~--~~~~~~I~T 219 (270)
T PRK06731 174 EEMIETMGQVEPDY---ICLT----LSAS--MKSKDMIEIITNFKD--IHIDGIVFT 219 (270)
T ss_pred HHHHHHHhhhCCCe---EEEE----EcCc--cCHHHHHHHHHHhCC--CCCCEEEEE
Confidence 67777655544432 3332 3321 111123345555654 667887764
No 233
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=60.64 E-value=15 Score=38.07 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
|.|.|. | =-|.||=.+|+.|+..|..+|+||-++-+||=.|
T Consensus 1 ~vIav~-g-KGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 1 RIIAIY-G-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred CEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCC
Confidence 346666 4 6899999999999999999999999999999554
No 234
>PRK06696 uridine kinase; Validated
Probab=60.21 E-value=19 Score=35.28 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
.|.|+| .||-||-..|..|...|...|.+|..+-+|=|..-
T Consensus 24 iI~I~G--~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 24 RVAIDG--ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 566777 58889999999999999999999999999999863
No 235
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=59.91 E-value=18 Score=36.27 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=31.9
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 11 ~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
=-|.||=.+|+.|+..|..+|+||-++-+||=.|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~ 42 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS 42 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence 67899999999999999999999999999996554
No 236
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=59.73 E-value=11 Score=38.86 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 12 SGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 12 s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
-|+||=.++|.|...|..+|+||-.+=+||--
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCCC
Confidence 37999999999999999999999999999963
No 237
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.63 E-value=31 Score=35.85 Aligned_cols=90 Identities=21% Similarity=0.135 Sum_probs=50.6
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+|+++.+..... .....+.+.|+..|+.+.+.-+ .+..+....... . ...+...++|-+++-||=|
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~----~~~~~~~~~~~~----~-~~~~~~~~~d~vi~lGGDG-- 74 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQ----IAHELQLKNVKT----G-TLAEIGQQADLAIVVGGDG-- 74 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecc----hhhhcCcccccc----c-chhhcCCCCCEEEEECCcH--
Confidence 3699997654321 1123456678778876654310 011110000000 0 0012234689999999854
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGm 401 (524)
..+.+++.+...++|+|||=+|.
T Consensus 75 ---T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 75 ---NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ---HHHHHHHHhcCCCCeEEEEECCC
Confidence 35677777777789999999987
No 238
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=58.59 E-value=8.8 Score=37.23 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 009814 12 SGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (524)
Q Consensus 12 s~lgkgi~~~s~g~ll~~~--g~~v~~~k~ 39 (524)
-|=|||-|+|++|..|++. |+||.++.|
T Consensus 28 tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 28 TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 3569999999999999984 678988776
No 239
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=57.42 E-value=50 Score=31.85 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=56.9
Q ss_pred cchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcc--------------cccc
Q 009814 89 TTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--------------IGDI 154 (524)
Q Consensus 89 t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggt--------------vgdi 154 (524)
+||++-.+.++. .|... ...++||-=-+.|+..+..++. .. .|++|+ .||| |=|=
T Consensus 27 ~sG~~l~~~L~~--ag~~~-~~~~iV~D~~~~I~~~l~~~~~------~~-~Dvvlt-tGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 27 KSGPLLVELLEE--AGHNV-AAYTIVPDDKEQIRATLIALID------ED-VDVVLT-TGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred cchhHHHHHHHH--cCCcc-ceEEEeCCCHHHHHHHHHHHhc------CC-CCEEEE-cCCccCCCCcCCHHHHHHHHhc
Confidence 499998888865 67777 8889999999999999999873 33 787765 8998 2232
Q ss_pred Ccch-HHHHHHHhhhhc-CCC
Q 009814 155 ESMP-FIEALGQFSYRV-GPG 173 (524)
Q Consensus 155 es~p-f~ea~rq~~~~~-~~~ 173 (524)
| +| |=|+||++.++. |..
T Consensus 96 e-ipGFgE~fR~~S~~~~g~~ 115 (169)
T COG0521 96 E-IPGFGELFRRLSLEEIGPT 115 (169)
T ss_pred c-CCcHHHHHHHhhhhcCCCc
Confidence 2 45 899999999998 544
No 240
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.75 E-value=17 Score=36.09 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=30.1
Q ss_pred CccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 009814 9 GVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (524)
Q Consensus 9 gv~s~lgkgi~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (524)
..==|.||..+|.-+|..|. .+|+||-.+-+||=-|
T Consensus 9 n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 9 NQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred ecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 33346799999999999999 7779999999999543
No 241
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=55.93 E-value=20 Score=38.18 Aligned_cols=39 Identities=31% Similarity=0.227 Sum_probs=35.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
||.|-|+|. ||-||=.....+-..|+.+||+|..+|-|.
T Consensus 205 ~~~~~~~g~--~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 205 PPLLGVVGY--SGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred ccEEEEecC--CCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 467888884 999999999999999999999999999775
No 242
>PRK01184 hypothetical protein; Provisional
Probab=55.20 E-value=15 Score=34.59 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=21.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v 34 (524)
|+.|++||+.-|| |+..| ++++..|+.+
T Consensus 1 ~~~i~l~G~~GsG--KsT~a----~~~~~~g~~~ 28 (184)
T PRK01184 1 MKIIGVVGMPGSG--KGEFS----KIAREMGIPV 28 (184)
T ss_pred CcEEEEECCCCCC--HHHHH----HHHHHcCCcE
Confidence 7889999997664 88753 3688888755
No 243
>PLN02727 NAD kinase
Probab=55.17 E-value=32 Score=41.26 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=53.0
Q ss_pred CeEEEEEeccCCC-cchHHHHHHHHHHc-CCceeEEeeeEEeeCCCccc-cccCCChhhhhHHHHh-ccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTGL-SDAYLSILKALLHA-SVDLRKKLVIDWIPACDLED-ATEKENPDAYKAAWKL-LKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~~-~day~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~-~~~~~~p~~y~~~~~~-l~~~DGIllpGGf 372 (524)
.-+|+||+|.... .+....+.+.|.+. |+.+-+.-+. ++.+.. .........|...++. ...+|-||+=||=
T Consensus 678 ~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~----a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGD 753 (986)
T PLN02727 678 PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDV----HDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGD 753 (986)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecch----HHHhhccccccccceecccchhhcccCCCEEEEECCc
Confidence 3489999988641 11224467777776 7655443111 111100 0000000000001122 2468999999985
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 373 GNRGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 373 G~rg~eg~i~air~are~~iP~LGICLGm 401 (524)
| -++.+++.....++|+|||=+|.
T Consensus 754 G-----TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 754 G-----VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred H-----HHHHHHHHhcCCCCCEEEEeCCC
Confidence 4 46778888888899999999884
No 244
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=55.15 E-value=16 Score=34.96 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCe----eEEeeecccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLR----VTCIKIDPYL 43 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~----v~~~k~dpyl 43 (524)
|.|+|+ ||-||-..|..|..+|...|.. +..+-+|-|.
T Consensus 2 IgI~G~--sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 2 IGIAGP--SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEES--TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred EEEECC--CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 778886 6779999999999999999998 7777777765
No 245
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=55.04 E-value=92 Score=28.92 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 11 ~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
--|.||=.+|+.|+..| .+|-++-.||..
T Consensus 8 kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 8 KGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred CCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 46889999999999999 899999999873
No 246
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=54.10 E-value=81 Score=31.10 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=47.6
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchh
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~e 378 (524)
+|.+||- -..+...|.++-+..|+.... -+|++-. |+... .+....||.|++.+ | .
T Consensus 63 ~ILfVgt---k~~~~~~V~~~A~~~g~~~v~---~RWlgGt-LTN~~-----------~~~~~~Pdlliv~d----p--~ 118 (196)
T TIGR01012 63 DILVVSA---RIYGQKPVLKFAKVTGARAIA---GRFTPGT-FTNPM-----------QKAFREPEVVVVTD----P--R 118 (196)
T ss_pred eEEEEec---CHHHHHHHHHHHHHhCCceEC---CeeCCCC-CCCcc-----------ccccCCCCEEEEEC----C--c
Confidence 6888872 122445555555556655433 3787653 32211 02246799999875 2 2
Q ss_pred HHHHHHHHHHHcCCCEEEEh
Q 009814 379 GKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 379 g~i~air~are~~iP~LGIC 398 (524)
....|+++|..-+||+.|||
T Consensus 119 ~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 119 ADHQALKEASEVGIPIVALC 138 (196)
T ss_pred cccHHHHHHHHcCCCEEEEe
Confidence 33579999999999999998
No 247
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=53.05 E-value=21 Score=39.40 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=34.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
||.|=|+|= |+-||-....-|-..|+.+||+|..||=|.
T Consensus 1 MkVi~IvG~--sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGW--KDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEec--CCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 677778884 999999999999999999999999999654
No 248
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=52.93 E-value=83 Score=30.61 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.+.- .... ...++.+.+.++|+..+
T Consensus 59 ~~vdgiIi~~~~-~~~~---~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 59 QGVDAIIINPAS-PTAL---NPVIEEACEAGIPVVSF 91 (272)
T ss_pred cCCCEEEEeCCC-hhhh---HHHHHHHHHCCCeEEEE
Confidence 489999996631 1111 23556777788998875
No 249
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=52.89 E-value=30 Score=31.16 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|.|-|+| ..+|.||-..|..++..|..+|.+|-.+-+|++
T Consensus 1 k~i~v~s-~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 4555554 567999999999999999999999999988874
No 250
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=52.49 E-value=28 Score=33.81 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
|.|++-| .+|.||=.|+|=|+..++.+|.+|.++-+|.|-
T Consensus 2 ~vi~lvG--ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVG--PTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEEC--CCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5667777 489999999999999999999999999999885
No 251
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=51.77 E-value=26 Score=35.58 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|.+..+-=.|.||=.+|+.++..|..+|.+|.++-.||=
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 444444568999999999999999999999999999985
No 252
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.34 E-value=41 Score=34.18 Aligned_cols=71 Identities=20% Similarity=0.147 Sum_probs=42.7
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchh
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~e 378 (524)
+++++++ .+....+..+.+.|...|..+... .... ....++|.|++-||=|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~------~~~~-----------------~~~~~~d~vi~iGGDG----- 52 (256)
T PRK14075 2 KLGIFYR-EEKEKEAKFLKEKISKEHEVVEFC------EASA-----------------SGKVTADLIIVVGGDG----- 52 (256)
T ss_pred EEEEEeC-ccHHHHHHHHHHHHHHcCCeeEee------cccc-----------------cccCCCCEEEEECCcH-----
Confidence 5666632 223335566677777777543321 1110 1234789999999854
Q ss_pred HHHHHHHHHHHcCCCEEEEhHhH
Q 009814 379 GKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 379 g~i~air~are~~iP~LGICLGm 401 (524)
..+.+++.+ ++|+|||=.|.
T Consensus 53 T~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 53 TVLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred HHHHHHHHc---CCCEEEEeCCC
Confidence 345555555 89999999885
No 253
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=51.28 E-value=24 Score=33.43 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=31.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
-|++|| .||-||=..|..|-.-|+++|.+|..+--|
T Consensus 4 vIwltG--lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTG--LSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEES--STTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 578888 799999999999999999999998887655
No 254
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=50.73 E-value=38 Score=33.00 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=30.5
Q ss_pred HhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
+.|+++|.||+...+++.-.....++++...+++.+++||.-+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4589999999998876543345567888888899999999843
No 255
>PRK15453 phosphoribulokinase; Provisional
Probab=50.67 E-value=21 Score=37.27 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=39.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtms 51 (524)
..|-|||| ||-||=.+|.++..+|+..|.++.++..|-|=-.|-..|.
T Consensus 6 piI~ItG~--SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~ 53 (290)
T PRK15453 6 PIIAVTGS--SGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMK 53 (290)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHh
Confidence 35889997 8999999999999999988988888888877665655443
No 256
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=50.57 E-value=20 Score=35.66 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=29.8
Q ss_pred cCCCEEEECCCCCCC-chh-HHHHHHHHHHHcCCCEEEEhH
Q 009814 361 KGADGILVPGGFGNR-GVQ-GKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 361 ~~~DGIllpGGfG~r-g~e-g~i~air~are~~iP~LGICL 399 (524)
.+.|.|.++-|||.= |++ |..-|=-.|...++|++|||-
T Consensus 57 ~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 57 QDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 367999999999984 664 443444467788999999985
No 257
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=50.18 E-value=20 Score=37.81 Aligned_cols=96 Identities=29% Similarity=0.532 Sum_probs=69.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~ 83 (524)
|=+|| +-|.||-....-+|+.|..+|++|.++-+||= |||-=|-+ ||+==|+-+....
T Consensus 54 iGITG--~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGGsi------------LGDRiRM~~~~~~ 111 (323)
T COG1703 54 IGITG--VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGGSI------------LGDRIRMQRLAVD 111 (323)
T ss_pred EEecC--CCCCchHHHHHHHHHHHHHCCcEEEEEEECCC--------CCCCCccc------------cccHhhHHhhccC
Confidence 33565 46889999999999999999999999999994 78877765 8887777666533
Q ss_pred CC----CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccc
Q 009814 84 RD----NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG 152 (524)
Q Consensus 84 ~~----~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvg 152 (524)
.+ +..|. .+|| -++.+..+.|.-+- ..++|++||| |||
T Consensus 112 ~~vFiRs~~sr--------------G~lG-------GlS~at~~~i~~ld-------AaG~DvIIVE---TVG 153 (323)
T COG1703 112 PGVFIRSSPSR--------------GTLG-------GLSRATREAIKLLD-------AAGYDVIIVE---TVG 153 (323)
T ss_pred CCeEEeecCCC--------------ccch-------hhhHHHHHHHHHHH-------hcCCCEEEEE---ecC
Confidence 22 22222 2344 35666667666653 5689999999 555
No 258
>PRK06179 short chain dehydrogenase; Provisional
Probab=49.72 E-value=19 Score=35.53 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=26.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
|.|+||||- |+||+ ++.+.|.++|++|...--||
T Consensus 5 ~~vlVtGas-g~iG~-----~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGAS-SGIGR-----ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEecCC-CHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 679999985 77775 45566778999999877665
No 259
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=49.52 E-value=30 Score=31.81 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=29.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
+-|.|+|. |+-||=..+..|-..|+++|++|..+|=+
T Consensus 1 pvv~VvG~--~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGP--KNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 34778885 89999999999999999999999988754
No 260
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=49.22 E-value=1.6e+02 Score=28.51 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.6
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEh
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGIC 398 (524)
..||.||+.+- .....++++|...+||+.|||
T Consensus 126 ~~Pdlviv~~~------~~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDP------RKEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCC------ccchHHHHHHHHcCCCEEEEe
Confidence 46899998872 123578999999999999996
No 261
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=49.04 E-value=16 Score=37.09 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=30.2
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 360 l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLGm 401 (524)
+.++|.|++=||=| .++.+++.+...++|+|||=+|.
T Consensus 23 ~~~~Dlvi~iGGDG-----TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDG-----FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCH-----HHHHHHHHhcCCCCeEEEEeCCC
Confidence 45689999999854 46778888888899999999885
No 262
>PRK06953 short chain dehydrogenase; Provisional
Probab=48.97 E-value=23 Score=33.94 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=25.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
||.++||||. ++||.-++ +.|.++|++|.++-.+
T Consensus 1 ~~~vlvtG~s-g~iG~~la-----~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGAS-RGIGREFV-----RQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCC-CchhHHHH-----HHHHhCCCEEEEEECC
Confidence 7889999996 88887654 4455689999887443
No 263
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=48.81 E-value=1.4e+02 Score=30.72 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEh
Q 009814 363 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 363 ~DGIllpGGfG~rg~eg~i~air~are~~iP~LGIC 398 (524)
||.+||-. | ...-.|+++|+.-+||+.+||
T Consensus 157 Pd~l~ViD----p--~~e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 157 PDVLFVID----P--RKEKIAVKEANKLGIPVVALV 186 (252)
T ss_pred CCEEEEeC----C--cHhHHHHHHHHHcCCCEEEEe
Confidence 67776654 2 234578999999999999998
No 264
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.70 E-value=41 Score=34.70 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=49.3
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~ 374 (524)
++|+++.+.+... .....+.+.|+..++++.+... .++...... .+ . ..+. ..++|.|++-||=|
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~----~~~~~~~~~---~~---~-~~~~~~~~~d~vi~iGGDG- 68 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSE----TYEHLPEFS---EE---D-VLPLEEMDVDFIIAIGGDG- 68 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecc----hhhhcCccc---cc---c-cccccccCCCEEEEEeCcH-
Confidence 4788887655321 1234566778888877665310 011110000 00 0 0011 13689999999854
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGm 401 (524)
-...+++ +...++|++||=.|.
T Consensus 69 ----TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 69 ----TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred ----HHHHHHH-hcCCCCeEEEEeCCC
Confidence 3456777 666789999999886
No 265
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=48.55 E-value=37 Score=30.68 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=33.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|-++++ =+|-||=.+++.++..|..+|.+|.++-.||+
T Consensus 2 i~~~~~-kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVTSG-KGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 345555 78999999999999999999999999999984
No 266
>PRK05693 short chain dehydrogenase; Provisional
Probab=47.76 E-value=21 Score=35.48 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=24.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
||-++|||| -||||+.++ +.|..+|++|...-
T Consensus 1 mk~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRALA-----DAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 788999998 478887655 45567899887653
No 267
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=47.75 E-value=17 Score=35.72 Aligned_cols=30 Identities=43% Similarity=0.771 Sum_probs=22.4
Q ss_pred ccCCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 009814 10 VVSGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (524)
Q Consensus 10 v~s~lgkgi~~~s~g~ll~~~--g~~v~~~k~ 39 (524)
|..|=|||-|+|.+|..|++. |++|-++.|
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred EEecCCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 345679999999999999985 566665543
No 268
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=47.75 E-value=27 Score=35.54 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=27.7
Q ss_pred CEEEEEeCCccCCcchHHHHH-HHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTAS-SIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~-s~g~ll~~~g~~v~~~k 38 (524)
||.+|++||+ |-.+..+ .+..-|+.+|+.|+++-
T Consensus 1 ~~i~~~~g~~----~g~~~~~~~La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGT----GGHIFPALAVAEELIKRGVEVLWLG 35 (348)
T ss_pred CeEEEEeCcc----HHHHhHHHHHHHHHHhCCCEEEEEe
Confidence 7888999988 4455544 89999999999998874
No 269
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=47.43 E-value=19 Score=38.79 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=30.3
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeee-cccccCC
Q 009814 13 GLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNTD 46 (524)
Q Consensus 13 ~lgkgi~~~s~g~ll~~~g~~v~~~k~-dpyln~d 46 (524)
|.||=.+++.|+..|..+|+||-+|-+ ||=-|.-
T Consensus 117 GVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt 151 (387)
T PHA02519 117 GVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTAS 151 (387)
T ss_pred CCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcc
Confidence 569999999999999999999999996 9966643
No 270
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.38 E-value=31 Score=37.44 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=33.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHH----CCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA----CGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~----~g~~v~~~k~dpy 42 (524)
+.|++.|-. |.||=.|++.++..|+. .|.+|.++-+|+|
T Consensus 175 ~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 356666765 99999999999998874 5899999999988
No 271
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=47.16 E-value=36 Score=32.07 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
++|+|+|. .|-||...+..|..-|...|++|...
T Consensus 4 ~~IvieG~--~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGI--DGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 78999995 78899999999999999999998643
No 272
>PRK07102 short chain dehydrogenase; Provisional
Probab=47.10 E-value=21 Score=34.65 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
||-|+||||- +|||+.++- .|-++|++|.+.=.++
T Consensus 1 ~~~vlItGas-~giG~~~a~-----~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGAT-SDIARACAR-----RYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCC-cHHHHHHHH-----HHHhcCCEEEEEeCCH
Confidence 6889999986 788866554 4446799888775443
No 273
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.03 E-value=30 Score=38.22 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|.|-||| +=||..|++=|..+|+..|+++.+
T Consensus 122 ~~I~VTG----TnGKTTTt~ml~~iL~~~g~~~~~ 152 (498)
T PRK02006 122 KVLAITG----TNGKTTTTALTGLLCERAGKKVAV 152 (498)
T ss_pred CEEEEEC----CCcHHHHHHHHHHHHHHcCCCEEE
Confidence 5688888 479999999999999999999887
No 274
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=46.98 E-value=42 Score=33.73 Aligned_cols=92 Identities=22% Similarity=0.230 Sum_probs=57.7
Q ss_pred CeEEEEEeccCCCcch---H-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTGLSDA---Y-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~~~da---y-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf 372 (524)
..+|+++ .+-.-... | ....++|+..|+.+.-. +.. +.| -.+.+..|.+.|+|.|.||-
T Consensus 32 ~~~i~FI-PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L------~l~--------~~~--~~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFI-PTASVDSEDDFYVEKVRNALAKLGLEVSEL------HLS--------KPP--LAAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEE-ecCccccchHHHHHHHHHHHHHcCCeeeee------ecc--------CCC--HHHHHHhhhhccEEEECCch
Confidence 4689999 45422112 3 24568899888876432 111 111 01122357789999999984
Q ss_pred CCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~r-----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
=-- --.|.+..|+.+..+++|+.|+--|.-+.+
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAG 132 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeec
Confidence 211 114788899999999999999987765443
No 275
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.77 E-value=20 Score=36.80 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=29.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLGm 401 (524)
.++|.+++=||=| -++.+++.+...++|+|||=+|.
T Consensus 32 ~~~D~vi~iGGDG-----T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG-----FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH-----HHHHHHHHhcCCCCcEEEEecCC
Confidence 4579999999854 46678888877899999999884
No 276
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=45.27 E-value=35 Score=34.28 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|-|.||++ -.|.||-.+|..++..|...|.||-+|-.|+-
T Consensus 104 ~vi~vts~-~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 104 KALAVVSA-KSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 55666654 58999999999999999999999999999864
No 277
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=44.93 E-value=27 Score=35.77 Aligned_cols=37 Identities=41% Similarity=0.520 Sum_probs=27.2
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 360 l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLGm 401 (524)
..++|-|++-||=| ....+++.+...++|+|||=.|.
T Consensus 74 ~~~~D~ii~lGGDG-----T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDG-----TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHH-----HHHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCH-----HHHHHHHHhccCCCcEEeecCCC
Confidence 57899999999833 35566666666689999998763
No 278
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=44.78 E-value=1.3e+02 Score=30.89 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=50.9
Q ss_pred HHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCE
Q 009814 286 SRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADG 365 (524)
Q Consensus 286 ~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DG 365 (524)
+++..+.++. .|.+||-- ......|.+.-++.|+.... =+|++-. ++..- ......||.
T Consensus 63 ~~i~~i~~~~---~Il~Vstr---~~~~~~V~k~A~~tg~~~i~---~Rw~pGt-lTN~~-----------~~~f~~P~l 121 (249)
T PTZ00254 63 RVIAAIENPA---DVVVVSSR---PYGQRAVLKFAQYTGASAIA---GRFTPGT-FTNQI-----------QKKFMEPRL 121 (249)
T ss_pred HHHHHHhCCC---cEEEEEcC---HHHHHHHHHHHHHhCCeEEC---CcccCCC-CCCcc-----------ccccCCCCE
Confidence 3444454432 46666511 12345566666666665433 2687643 32210 023568999
Q ss_pred EEECCCCCCCchhHHHHHHHHHHHcCCCEEEEh
Q 009814 366 ILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 366 IllpGGfG~rg~eg~i~air~are~~iP~LGIC 398 (524)
|||.+ | .....+|++|..-+||+.|||
T Consensus 122 lIV~D-p-----~~d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 122 LIVTD-P-----RTDHQAIREASYVNIPVIALC 148 (249)
T ss_pred EEEeC-C-----CcchHHHHHHHHhCCCEEEEe
Confidence 99986 2 123578999999999999999
No 279
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=44.74 E-value=1.3e+02 Score=33.27 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=94.8
Q ss_pred CCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHH-
Q 009814 207 QGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWT- 285 (524)
Q Consensus 207 ~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~- 285 (524)
-|.....-++|-+.=+..... --||-+..++=.|+ .+++ .|...+.+--.++...++..+.+ .+....|-
T Consensus 100 pgy~~~lp~aR~Dvf~~~~~~---~kF~E~N~Dgssgm--~~~~-~l~~~~~~~~~~~~f~~~~~v~~---~~~~~~~vd 170 (445)
T PF14403_consen 100 PGYDSPLPIARLDVFLTEDGS---FKFCEFNADGSSGM--NEDD-ELARIFLELPAMQEFAERYRVEP---LPLFQSWVD 170 (445)
T ss_pred CCCCCcCcceeeeEEEcCCCc---eEEEEecCCCcccc--chhH-HHHHHHHhhHHHHHHHhhcCccC---cchHHHHHH
Confidence 344444556665554443221 45677777777777 6777 88888888888888888877753 22334453
Q ss_pred ---HHHHhhcCCCCCeEEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc
Q 009814 286 ---SRAEICDGLHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (524)
Q Consensus 286 ---~lv~~~~~~~~~v~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l 360 (524)
+.........++++|||| ++.+.. +-..-..+.|+..|+++.+- +. +.|
T Consensus 171 ~~l~~y~~~~~~~~~P~IAIv-Df~~~~~~~Ef~~f~~~f~~~G~~~vI~------d~-------------------~~L 224 (445)
T PF14403_consen 171 ALLDIYRTFGGRVEKPNIAIV-DFLEYPTLSEFEVFQRLFEEHGYDCVIC------DP-------------------RDL 224 (445)
T ss_pred HHHHHHHHhcCcCCCCcEEEE-ecccCCccchHHHHHHHHHHcCCceEec------Ch-------------------HHc
Confidence 222333334456899999 576543 22344578888999998875 33 334
Q ss_pred cCCCEEEECCCCCC----C-c--------hhHHHHHHHHHHHcCCCEEEEhH
Q 009814 361 KGADGILVPGGFGN----R-G--------VQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 361 ~~~DGIllpGGfG~----r-g--------~eg~i~air~are~~iP~LGICL 399 (524)
.--||.+..||+-. | - ..+.-..++..++..++++|==.
T Consensus 225 ~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~av~~vgsfr 276 (445)
T PF14403_consen 225 EYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDGAVCMVGSFR 276 (445)
T ss_pred eecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcCCeEEecchh
Confidence 44578888777543 1 1 11233344455566677776433
No 280
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=44.41 E-value=36 Score=33.46 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=28.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
-|..|| +||-||-.+|..+-..|.++|++|-.+
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred EEEeec--CCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467788 899999999999999999999976443
No 281
>PRK06940 short chain dehydrogenase; Provisional
Probab=44.33 E-value=31 Score=34.57 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|.++|||+ ||||+.++- .|. +|.+|.+.=.|
T Consensus 3 k~~lItGa--~gIG~~la~-----~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIAR-----RVG-AGKKVLLADYN 33 (275)
T ss_pred CEEEEECC--ChHHHHHHH-----HHh-CCCEEEEEeCC
Confidence 78899997 899987754 343 69999886443
No 282
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=43.96 E-value=21 Score=36.48 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=28.2
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 13 ~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|+||-.|++-+.+-|...|.||-.+=+||=
T Consensus 11 GIGKSTts~N~aAAla~~GkkVl~vGCDPK 40 (278)
T COG1348 11 GIGKSTTSQNLAAALAELGKKVLIVGCDPK 40 (278)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEcCCCC
Confidence 799999999999999999999999999994
No 283
>PF02424 ApbE: ApbE family; InterPro: IPR003374 This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis []. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine.; PDB: 2O34_B 2O18_C 1VRM_A 3PND_D.
Probab=43.91 E-value=18 Score=36.50 Aligned_cols=90 Identities=26% Similarity=0.421 Sum_probs=49.3
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeec--ccccCCC--------CCCCc---cccceEEEccCCccccCCCCccccc
Q 009814 11 VSGLGKGVTASSIGVLLKACGLRVTCIKID--PYLNTDA--------GTMSP---FEHGEVFVLDDGGEVDLDLGNYERF 77 (524)
Q Consensus 11 ~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d--pyln~d~--------gtmsp---~~hgevfv~~dg~e~dldlg~yerf 77 (524)
+.|++||-++--+..+|++.|.+=.++-+= =+..=.+ |--+| -+.-.+.-+.|++=+= =|+||||
T Consensus 110 lggiaKGyavD~~~~~L~~~gi~~~lVn~GGdi~~~G~~~~g~~W~IgI~~P~~~~~~~~~~~l~~~avaT--Sg~y~r~ 187 (254)
T PF02424_consen 110 LGGIAKGYAVDRAAELLREAGITNALVNAGGDIRAIGSKPDGQPWRIGIEDPRDPGRILGVLELSNGAVAT--SGDYERY 187 (254)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTTSCEEEEETTEEEEESBCTTSSBEEEEEEETCTTCCEEEEEECCTSEEEE--EETTCCC
T ss_pred cchhHHHHHHHHHHHHHHHcCCCeEEEeCCCcEEEeccCCCCCeEEEEecccCCCCceeEEEEeCCcEEEe--ccCceee
Confidence 468999999999999999998754443321 0000000 11122 2222244444442110 2899999
Q ss_pred cCCCCCCCCcccchHhhHHHHhhhhcCCCC-CCeeE
Q 009814 78 MDIKLTRDNNITTGKIYQSVIDKERKGDYL-GKTVQ 112 (524)
Q Consensus 78 ~~~~~~~~~n~t~g~iy~~vi~ker~g~yl-g~tvq 112 (524)
...+ |+.|..+|+- |.|.-. ....|
T Consensus 188 ~~~~---------g~~~~HIidP-~tG~p~~~~~~s 213 (254)
T PF02424_consen 188 FEID---------GKRYHHIIDP-RTGYPAESGIAS 213 (254)
T ss_dssp CCCT---------SCECES-BET-TTSSB-SSSEEE
T ss_pred EEEC---------CEEeeeeECC-CCCcCccCCcEE
Confidence 9654 7778888776 455444 33333
No 284
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=43.85 E-value=34 Score=35.22 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=29.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+|+|.|.==-|.||=.+|.-|+.-|...|+||-++-+|.|
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3555555556889999999999999999999999999986
No 285
>PRK07890 short chain dehydrogenase; Provisional
Probab=43.74 E-value=28 Score=33.83 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=24.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
|.|||||| -|+||+- +.+.|-++|++|.+.-.
T Consensus 6 k~vlItGa-~~~IG~~-----la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 6 KVVVVSGV-GPGLGRT-----LAVRAARAGADVVLAAR 37 (258)
T ss_pred CEEEEECC-CCcHHHH-----HHHHHHHcCCEEEEEeC
Confidence 78999998 5677754 45666788998887744
No 286
>PRK05854 short chain dehydrogenase; Provisional
Probab=43.21 E-value=24 Score=36.19 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- ||||+.++ +.|..+|++|.+.
T Consensus 15 k~~lITGas-~GIG~~~a-----~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGAS-DGLGLGLA-----RRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 89998665 4466789888765
No 287
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=43.12 E-value=65 Score=30.73 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=43.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCCCCCCccccce
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDAGTMSPFEHGE 57 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d~gtmsp~~hge 57 (524)
||.+=||| .|+-||=...-.|-+.|+++||+|..+|-++= ..+|.--=..|.|.+
T Consensus 2 ~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~ 57 (161)
T COG1763 2 MKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRK 57 (161)
T ss_pred CcEEEEEe--cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhc
Confidence 35555666 57788999999999999999999999998765 366666666666654
No 288
>PRK06101 short chain dehydrogenase; Provisional
Probab=42.90 E-value=27 Score=33.91 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=25.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
||-++||||. +|||+.++ +.|.++|++|.+.=-
T Consensus 1 ~~~vlItGas-~giG~~la-----~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITGAT-SGIGKQLA-----LDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEcCC-cHHHHHHH-----HHHHhCCCEEEEEEC
Confidence 5789999995 88886654 566678999987633
No 289
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=42.78 E-value=47 Score=34.39 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
|-|-|+| .=-|.||=.+|+.|+..|..+|.+|-++-+||.-+
T Consensus 94 ~vIav~~-~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 94 VVVAVIG-GRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred eEEEEEc-CCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4566665 45789999999999999999999999999999865
No 290
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.39 E-value=77 Score=33.01 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=49.0
Q ss_pred EEEEEeccCCCc--chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~--day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
+|+++.+..... +....+.+.|+..++++.+. ...++.+...... +.......+.+|-|++-||=|
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~----~~~~~~~~~~~~~-----~~~~~~~~~~~d~vi~~GGDG--- 73 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILD----EETAEVLPGHGLQ-----TVSRKLLGEVCDLVIVVGGDG--- 73 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCccccc-----ccchhhcccCCCEEEEEeCcH---
Confidence 689986544211 23445667777777765543 1011111100000 000001224689999999844
Q ss_pred hhHHHHHHHHHHHcCCCEEEEhHhH
Q 009814 377 VQGKILAAKYAREHRIPYLGICLGM 401 (524)
Q Consensus 377 ~eg~i~air~are~~iP~LGICLGm 401 (524)
....+++.+...++|+|||=.|.
T Consensus 74 --t~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 74 --SLLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred --HHHHHHHHhcCCCCCEEEEeCCc
Confidence 25567777767899999999885
No 291
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=42.37 E-value=94 Score=30.85 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=47.6
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchh
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~e 378 (524)
+|.+||- -..+...|.++-+..|+.... -+|++-. ++... .+.-..||.|++.+= .
T Consensus 69 ~ILfVgT---k~~~~~~v~k~A~~~g~~~v~---~RWlgG~-LTN~~-----------~~~~~~Pdliiv~dp------~ 124 (204)
T PRK04020 69 KILVVSS---RQYGQKPVQKFAEVVGAKAIT---GRFIPGT-LTNPS-----------LKGYIEPDVVVVTDP------R 124 (204)
T ss_pred eEEEEeC---CHHHHHHHHHHHHHhCCeeec---CccCCCc-CcCcc-----------hhccCCCCEEEEECC------c
Confidence 6888871 222445566655556655433 3687643 32211 012347899999882 2
Q ss_pred HHHHHHHHHHHcCCCEEEEh
Q 009814 379 GKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 379 g~i~air~are~~iP~LGIC 398 (524)
....|+++|..-+||+.|||
T Consensus 125 ~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 125 GDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred ccHHHHHHHHHhCCCEEEEE
Confidence 23679999999999999998
No 292
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=42.28 E-value=93 Score=34.07 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=26.5
Q ss_pred CCcEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEE
Q 009814 139 PVDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLI 178 (524)
Q Consensus 139 ~~d~~i~e-iggtvgdie-s~pf~ea~rq~~~~~~~~n~~~i 178 (524)
+.-.+|+| |-|.-|++. +--|++++|++..+.| +++|
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g---~llI 256 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHG---ILLI 256 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC---CEEE
Confidence 44568888 556667764 4459999999999865 5554
No 293
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=42.04 E-value=30 Score=33.42 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=21.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
||-|+||||. +|||+.+ .+.|-++|++|.+
T Consensus 2 ~k~ilItGas-~giG~~l-----a~~l~~~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGAS-RGIGRAT-----AVLAAARGWSVGI 31 (248)
T ss_pred CcEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEE
Confidence 5789999985 7888764 4556677877643
No 294
>PRK06851 hypothetical protein; Provisional
Probab=41.89 E-value=44 Score=36.04 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=33.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe--eecc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI--KIDP 41 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~--k~dp 41 (524)
|.+++||| +|.||-.+...|+..|..+|+.|..+ -.||
T Consensus 31 ~~~il~G~--pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 31 RIFILKGG--PGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 67899998 79999999999999999999999987 4455
No 295
>PRK06924 short chain dehydrogenase; Provisional
Probab=41.75 E-value=40 Score=32.67 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=23.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
||.|+||||- +|||+.+ .+-|-++|++|.++
T Consensus 1 ~k~vlItGas-ggiG~~i-----a~~l~~~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-QGLGEAI-----ANQLLEKGTHVISI 31 (251)
T ss_pred CcEEEEecCC-chHHHHH-----HHHHHhcCCEEEEE
Confidence 7899999975 6777655 45566789988775
No 296
>PRK05439 pantothenate kinase; Provisional
Probab=41.64 E-value=43 Score=35.28 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=35.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeecccccC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPYLNT 45 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~--g~~v~~~k~dpyln~ 45 (524)
.|.|||++ |-||=.+|..|-.+|+.. |.+|.++-+|-|+.-
T Consensus 88 iIgIaG~~--gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 88 IIGIAGSV--AVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred EEEEECCC--CCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 58899984 678999999999999874 789999999999864
No 297
>PRK08177 short chain dehydrogenase; Provisional
Probab=41.44 E-value=40 Score=32.30 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
||-++||||. ++||+. +.+.|.++|++|..+-.+
T Consensus 1 ~k~vlItG~s-g~iG~~-----la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGAS-RGLGLG-----LVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCCC-chHHHH-----HHHHHHhCCCEEEEEeCC
Confidence 6889999994 566654 556777889998876544
No 298
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=41.12 E-value=57 Score=33.58 Aligned_cols=35 Identities=46% Similarity=0.574 Sum_probs=28.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
..+|-|++-||=| -++.+++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDG-----tlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDG-----TLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcH-----HHHHHHHHhccCCCCEEEEeCC
Confidence 5688888888744 4677888888888999999999
No 299
>PRK06398 aldose dehydrogenase; Validated
Probab=41.02 E-value=29 Score=34.24 Aligned_cols=30 Identities=43% Similarity=0.553 Sum_probs=23.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++|||| -+|||+-+ .+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~i-----a~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGG-SQGIGKAV-----VNRLKEEGSNVINF 36 (258)
T ss_pred CEEEEECC-CchHHHHH-----HHHHHHCCCeEEEE
Confidence 78999998 47888765 46777899998865
No 300
>PRK12742 oxidoreductase; Provisional
Probab=41.02 E-value=32 Score=33.00 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|.|+|||| -||||+-++ +.|.++|++|.+
T Consensus 7 k~vlItGa-sggIG~~~a-----~~l~~~G~~v~~ 35 (237)
T PRK12742 7 KKVLVLGG-SRGIGAAIV-----RRFVTDGANVRF 35 (237)
T ss_pred CEEEEECC-CChHHHHHH-----HHHHHCCCEEEE
Confidence 78999998 678887654 667788888764
No 301
>PRK03846 adenylylsulfate kinase; Provisional
Probab=41.01 E-value=43 Score=32.07 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=31.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+.|.+||. ||-||=..+..|..+|..+|..+-.+.-|++-
T Consensus 25 ~~i~i~G~--~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 25 VVLWFTGL--SGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 56888886 79999999999999998888877666556543
No 302
>PRK07933 thymidylate kinase; Validated
Probab=40.88 E-value=50 Score=32.38 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
+||.+-| +.|-||-..+..|...|+++|++|...+.-
T Consensus 1 ~~IviEG--~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEG--VDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4788887 578899999999999999999999999874
No 303
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=40.15 E-value=75 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 13 GLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 13 ~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
+=||..|++=|..+|+..|..|...-
T Consensus 4 T~GKTTTt~ml~~iL~~~g~~~~~~~ 29 (188)
T PF08245_consen 4 TNGKTTTTRMLAHILSAAGKVVGTIG 29 (188)
T ss_dssp SSSHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCHHHHHHHHHHHHHhcCCcccccc
Confidence 56999999999999999999888876
No 304
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.07 E-value=60 Score=30.23 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcc--ccccCcchHHHHHHHhhhhcCC--CCEEEEEeeeee
Q 009814 118 TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--IGDIESMPFIEALGQFSYRVGP--GNFCLIHVSLVP 184 (524)
Q Consensus 118 t~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggt--vgdies~pf~ea~rq~~~~~~~--~n~~~ih~~~vp 184 (524)
|.++.+++..+. ..+||+|+|.+|+- .......-|.+.+++|-..+.. .++-.+=+++.|
T Consensus 53 ~~~~~~~l~~~~-------~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 53 SADLLRQLAPLP-------ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHHhcc-------cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 345556666632 56899999999984 1111223466777777666554 344444344433
No 305
>PRK04148 hypothetical protein; Provisional
Probab=39.97 E-value=32 Score=31.91 Aligned_cols=108 Identities=23% Similarity=0.291 Sum_probs=70.4
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCcccchH
Q 009814 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNITTGK 92 (524)
Q Consensus 13 ~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~~~~n~t~g~ 92 (524)
|+|-| .++...|+..|+.|+.+-+||..--++ -+.|--+|.+|--+.|+++ |+-+ + -
T Consensus 24 G~GfG---~~vA~~L~~~G~~ViaIDi~~~aV~~a-----~~~~~~~v~dDlf~p~~~~--y~~a---~----------l 80 (134)
T PRK04148 24 GIGFY---FKVAKKLKESGFDVIVIDINEKAVEKA-----KKLGLNAFVDDLFNPNLEI--YKNA---K----------L 80 (134)
T ss_pred EecCC---HHHHHHHHHCCCEEEEEECCHHHHHHH-----HHhCCeEEECcCCCCCHHH--HhcC---C----------E
Confidence 45544 456678889999999999999843222 2346678888887776532 2211 1 1
Q ss_pred hhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHhhhhcCC
Q 009814 93 IYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGP 172 (524)
Q Consensus 93 iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ea~rq~~~~~~~ 172 (524)
|| -+=| +-|++.-|.++|+ .-++|++|.=+||-. .++.||..--+
T Consensus 81 iy-----------------sirp--p~el~~~~~~la~------~~~~~~~i~~l~~e~----------~~~~~kl~ny~ 125 (134)
T PRK04148 81 IY-----------------SIRP--PRDLQPFILELAK------KINVPLIIKPLSGEE----------PIKELKLINYK 125 (134)
T ss_pred EE-----------------EeCC--CHHHHHHHHHHHH------HcCCCEEEEcCCCCC----------CCcceEEEecC
Confidence 11 1223 5799999999995 789999999999853 33455555444
Q ss_pred CCEEEE
Q 009814 173 GNFCLI 178 (524)
Q Consensus 173 ~n~~~i 178 (524)
...+|+
T Consensus 126 ~~~~y~ 131 (134)
T PRK04148 126 GKPIYV 131 (134)
T ss_pred CeEEEE
Confidence 445544
No 306
>PRK08303 short chain dehydrogenase; Provisional
Probab=39.85 E-value=30 Score=35.64 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- ||||+.++ +.|-+.|++|.+.
T Consensus 9 k~~lITGgs-~GIG~aia-----~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGAT-RGAGRGIA-----VELGAAGATVYVT 38 (305)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEE
Confidence 789999986 78887655 5566689988765
No 307
>PRK08727 hypothetical protein; Validated
Probab=39.82 E-value=21 Score=35.44 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=43.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~d 63 (524)
.++++|+ ||.||==.+.+++.-+...|++|..+-.+-+.+.=+..++-++.=.+.|.||
T Consensus 43 ~l~l~G~--~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGP--AGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeC
Confidence 5899998 8999998899999999999999988766543332123333444446888885
No 308
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=39.67 E-value=41 Score=29.83 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=49.1
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEccc-----chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc----
Q 009814 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPH-----ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 157 (524)
Q Consensus 87 n~t~g~iy~~vi~ker~g~ylg~tvqviph-----it~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~---- 157 (524)
+.+++.-|...+.++ .+..+.|... -+.....++.+.... + ...+||++++++|+ .|+-.-
T Consensus 12 ~~~~~~~~~~~l~~~-----~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~-~--~~~~~d~vvi~~G~--ND~~~~~~~~ 81 (179)
T PF13472_consen 12 GAPNNGSYPDRLAER-----PGRGIEVYNLGVSGATSSDFLARLQRDVLR-F--KDPKPDLVVISFGT--NDVLNGDEND 81 (179)
T ss_dssp TTSSCTSHHHHHHHH-----HTCCEEEEEEE-TT-BHHHHHHHHHHHCHH-H--CGTTCSEEEEE--H--HHHCTCTTCH
T ss_pred CCCCCCCHHHHHHHh-----hCCCcEEEEEeecCccHhHHHHHHHHHHhh-h--ccCCCCEEEEEccc--cccccccccc
Confidence 334557788888885 4444544422 122223233322100 0 25689999999995 555442
Q ss_pred ----hHHHHHHHhhhhcCCCCEEEEEeeeeeeecC
Q 009814 158 ----PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV 188 (524)
Q Consensus 158 ----pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~ 188 (524)
-|.++++++...+.+.. -.+.+++.|+...
T Consensus 82 ~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~ 115 (179)
T PF13472_consen 82 TSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPD 115 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSS
T ss_pred ccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccc
Confidence 27788888888776666 4444455565544
No 309
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.41 E-value=2.5e+02 Score=24.13 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=25.1
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhH
Q 009814 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 360 l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICL 399 (524)
+..-|.+|+-.-.|.. ...+++++.|+++++|+.+|+-
T Consensus 58 ~~~~~~~i~iS~~g~~--~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 58 LTPGDVVIAISFSGET--KETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred CCCCCEEEEEeCCCCC--HHHHHHHHHHHHcCCeEEEEcC
Confidence 3344555443334443 4567899999999999999853
No 310
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.16 E-value=31 Score=33.85 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++|||| -||||+.++ +.|-++|++|.+.
T Consensus 9 k~~lItGa-s~gIG~aia-----~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMA-----IGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCC-CchHHHHHH-----HHHHHCCCEEEEe
Confidence 78999998 477777654 5566789988753
No 311
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=38.85 E-value=77 Score=32.40 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=31.2
Q ss_pred cCCCEEEECCCCCC--CchhHHHHHHHHHHHcCCCEEEE--hHhHHHHHHHhcccccc
Q 009814 361 KGADGILVPGGFGN--RGVQGKILAAKYAREHRIPYLGI--CLGMQVAVIEFARSVLN 414 (524)
Q Consensus 361 ~~~DGIllpGGfG~--rg~eg~i~air~are~~iP~LGI--CLGmQll~ie~gr~v~g 414 (524)
++.|-|...-|||- |-....+-+=.-..--++|+.|+ |.|| ||.||.+-|
T Consensus 69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigH----IEMGR~iTg 122 (336)
T KOG2708|consen 69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGH----IEMGREITG 122 (336)
T ss_pred hhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhh----hhhcceecc
Confidence 35688888888876 32233333222233358999998 7776 567787644
No 312
>PRK14528 adenylate kinase; Provisional
Probab=38.81 E-value=41 Score=32.09 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll 27 (524)
||-|+|+|+ +|-||+..|.-|+.-+
T Consensus 1 ~~~i~i~G~--pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGP--PGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 688999998 9999999988776543
No 313
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.70 E-value=36 Score=33.25 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=25.1
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv-~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|-|+||||. .||||+. +.+.|..+|++|.+.=
T Consensus 6 k~vlItGas~~~giG~~-----la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLNGIGAA-----VCRRLAAKGIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCCCHHHH-----HHHHHHHcCCcEEEEc
Confidence 679999998 5889876 4566777899887763
No 314
>PRK07035 short chain dehydrogenase; Provisional
Probab=38.69 E-value=34 Score=33.26 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- |||| +++.+.|.++|++|.++
T Consensus 9 k~vlItGas-~gIG-----~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGAS-RGIG-----EAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCC-cHHH-----HHHHHHHHHCCCEEEEE
Confidence 679999986 6666 46667777889988766
No 315
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.61 E-value=36 Score=31.66 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=28.3
Q ss_pred hccCCCEEEECCCCCCCchhHHHHHHHHHHH--cCCCEEEEhH
Q 009814 359 LLKGADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICL 399 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~rg~eg~i~air~are--~~iP~LGICL 399 (524)
.+.++|.|++-||-.-|...-.++-+|...| .+.|+.|+|.
T Consensus 82 ~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 82 ELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred ccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 3566999999999887744323344444443 4579999996
No 316
>PRK04296 thymidine kinase; Provisional
Probab=38.61 E-value=71 Score=30.60 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=27.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeecccccC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~--~~g~~v~~~k~dpyln~ 45 (524)
+.+++||.+ |+|-|++.++.+.. .+|.+|-++| |.+..
T Consensus 3 ~i~litG~~----GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~ 42 (190)
T PRK04296 3 KLEFIYGAM----NSGKSTELLQRAYNYEERGMKVLVFK--PAIDD 42 (190)
T ss_pred EEEEEECCC----CCHHHHHHHHHHHHHHHcCCeEEEEe--ccccc
Confidence 467778763 88889888888855 4799998885 54443
No 317
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=38.30 E-value=51 Score=31.33 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=31.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
|.++|+ ||-||=..|..|..+| .+.+|.++-.|.|..
T Consensus 2 igi~G~--~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 2 IGIAGG--SGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 788998 8999999999999988 567888899998764
No 318
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=37.84 E-value=1.8e+02 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=22.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++++.... ...+.+.+.+.++|++.+
T Consensus 57 ~~~d~ii~~~~~~~-----~~~~~~~~~~~~ip~v~~ 88 (269)
T cd01391 57 QGVDGIIGPPSSSS-----ALAVVELAAAAGIPVVSL 88 (269)
T ss_pred cCCCEEEecCCCHH-----HHHHHHHHHHcCCcEEEe
Confidence 36999998875321 112667788889999876
No 319
>PLN02422 dephospho-CoA kinase
Probab=37.70 E-value=41 Score=33.87 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=22.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v 34 (524)
||.|.||||.-| ||. +++.+|+..|+.|
T Consensus 1 M~~igltG~igs--GKs----tv~~~l~~~g~~~ 28 (232)
T PLN02422 1 MRVVGLTGGIAS--GKS----TVSNLFKSSGIPV 28 (232)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHCCCeE
Confidence 789999999766 564 6667788889876
No 320
>PRK09072 short chain dehydrogenase; Provisional
Probab=37.70 E-value=37 Score=33.39 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=24.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|.++||||. |+||+.+ .+.|.++|++|.+.-.+
T Consensus 6 ~~vlItG~s-~~iG~~i-----a~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGAS-GGIGQAL-----AEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEEECC
Confidence 679999987 7888654 56667889998876544
No 321
>PRK12829 short chain dehydrogenase; Provisional
Probab=37.59 E-value=39 Score=32.84 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=25.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|.++||||- ++|| +++...|.++|++|.++-.|
T Consensus 12 ~~vlItGa~-g~iG-----~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTGGA-SGIG-----RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeCCC-CcHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 679999995 5554 67788888999998876533
No 322
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=37.54 E-value=4.1e+02 Score=26.10 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=29.9
Q ss_pred EEEEEeCCccCC-cchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSG-LGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~-lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
|.+|||...... -|=+..+..+..-|+.+|++|+++=.++..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 456777655431 355667788999999999999998665543
No 323
>PRK12828 short chain dehydrogenase; Provisional
Probab=37.26 E-value=43 Score=31.80 Aligned_cols=34 Identities=41% Similarity=0.572 Sum_probs=26.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
|.|+||||- +++| .++.+.|.++|++|.++--||
T Consensus 8 k~vlItGat-g~iG-----~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 8 KVVAITGGF-GGLG-----RATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CEEEEECCC-CcHh-----HHHHHHHHHCCCeEEEEeCCh
Confidence 679999986 6666 566677888899988776654
No 324
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.04 E-value=50 Score=31.92 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=38.1
Q ss_pred cCCCEEEECCCCCCC---------ch-----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 361 KGADGILVPGGFGNR---------GV-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---------g~-----eg~i~air~are~~iP~LGICLGmQll~ie~gr~ 411 (524)
...|++++|||||.. |. .....+++...+.++|+==||.---|+.--||.-
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~ 148 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFP 148 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCc
Confidence 457999999999973 11 2455666777788999999999888887666543
No 325
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=36.95 E-value=36 Score=36.83 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=23.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v 34 (524)
|+.|.||||.-| || |+++++|+..|+.|
T Consensus 1 m~~IgltG~igs--GK----Stv~~~L~~~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGA--GK----STVAARLAELGAVV 28 (395)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 788999999866 45 67888999888875
No 326
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=36.81 E-value=2e+02 Score=30.60 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=25.2
Q ss_pred CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEh
Q 009814 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 362 ~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGIC 398 (524)
.||.|||.+- .....||++|+..+||+.|||
T Consensus 152 ~Pd~viv~d~------~~e~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 152 LPDLLFVIDT------NKEDIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred CCCEEEEeCC------ccchHHHHHHHHcCCCEEEEe
Confidence 5888888872 133679999999999999997
No 327
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=36.81 E-value=48 Score=28.63 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred cCCcchHHHHHHHHHHHHHC-CCeeEEeeecccc
Q 009814 11 VSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYL 43 (524)
Q Consensus 11 ~s~lgkgi~~~s~g~ll~~~-g~~v~~~k~dpyl 43 (524)
=.|.||=.++..++..|.+. |++|-++-+||.-
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~ 41 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF 41 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 36899999999999999998 9999999999974
No 328
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=36.74 E-value=49 Score=35.38 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=31.5
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 9 gv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
.-=-|.||=.+|+.++..|..+|+||-+|-+||--|
T Consensus 111 n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 111 NFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred ccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 344578999999999999999999999999999533
No 329
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=36.51 E-value=21 Score=38.02 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=36.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc--CCCCCCCc
Q 009814 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN--TDAGTMSP 52 (524)
Q Consensus 10 v~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln--~d~gtmsp 52 (524)
+|.|.|-|=|.+++||-||.++..+-++=.||+-. .|++.-+|
T Consensus 216 ~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 216 FVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred EEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 45678888888999999999999999999999854 46666666
No 330
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.45 E-value=96 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCEEEECCCCCCCchhHHHHHHHHHHHc-CCCEEEEhH-h
Q 009814 362 GADGILVPGGFGNRGVQGKILAAKYAREH-RIPYLGICL-G 400 (524)
Q Consensus 362 ~~DGIllpGGfG~rg~eg~i~air~are~-~iP~LGICL-G 400 (524)
++|-+++=||=| ..+.+++.+... ++|+|||=+ |
T Consensus 39 ~~D~vi~lGGDG-----T~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 39 NANIIVSIGGDG-----TFLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CccEEEEECCcH-----HHHHHHHHhcccCCCeEEeEecCC
Confidence 568899989854 355666665443 789999999 7
No 331
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=36.37 E-value=48 Score=35.23 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=37.1
Q ss_pred ccCCCEEEECCCCCCCc---hhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~rg---~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...+|-|++.+|.+... ..-...+++.+...++++-|||-|-=+|+
T Consensus 74 ~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA 122 (328)
T COG4977 74 APPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122 (328)
T ss_pred cCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHH
Confidence 34578888877777642 24588999999999999999999998887
No 332
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=36.32 E-value=63 Score=30.35 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=28.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
+.|.++|. ||-||...+..|...|+..|..+..+-
T Consensus 19 ~~i~i~G~--~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 19 VVIWLTGL--SGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 56788884 689999999999999998887665443
No 333
>PRK11519 tyrosine kinase; Provisional
Probab=36.04 E-value=59 Score=37.94 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|.|.||+. .+|-||-.+|+.++..|...|.||-+|-.|+.
T Consensus 527 kvi~vts~-~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 527 NVLMMTGV-SPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 66788864 67999999999999999999999999999986
No 334
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=35.98 E-value=45 Score=32.70 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=24.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
+++||||- ||||+.++- .+.+.+++.|++|.+.-
T Consensus 2 ~vlItGas-~GIG~~~a~-~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQ-ELAKCLKSPGSVLVLSA 35 (256)
T ss_pred EEEEecCC-CchHHHHHH-HHHHhhccCCcEEEEEE
Confidence 68999996 999987654 33333446899887653
No 335
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=35.94 E-value=77 Score=30.46 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHcCCceeEEeeeEEeeCCC-ccccccCCChhhhhHHHHhccCC--C--EEEECCCCCCCchhHHHHHHHHHHHcCCCE
Q 009814 320 LLHASVDLRKKLVIDWIPACD-LEDATEKENPDAYKAAWKLLKGA--D--GILVPGGFGNRGVQGKILAAKYAREHRIPY 394 (524)
Q Consensus 320 L~~ag~~~~v~v~i~~i~s~~-le~~~~~~~p~~y~~~~~~l~~~--D--GIllpGGfG~rg~eg~i~air~are~~iP~ 394 (524)
|+..|+...+. |-+. +.+.....-+..|.+.|+.++.. . -+|+||..|.....+..++-.....-++|+
T Consensus 36 Lk~~Gik~li~------DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 36 LKKKGIKALIF------DKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV 109 (168)
T ss_pred hhhcCceEEEE------cCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence 88888887765 4443 43333234445677777776532 2 469999887653222223333333344554
Q ss_pred E
Q 009814 395 L 395 (524)
Q Consensus 395 L 395 (524)
|
T Consensus 110 l 110 (168)
T PF09419_consen 110 L 110 (168)
T ss_pred E
Confidence 4
No 336
>PRK05480 uridine/cytidine kinase; Provisional
Probab=35.88 E-value=67 Score=30.85 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=30.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
..|.++| .||-||=..+..|..+| .+.+|..+-.|.|.
T Consensus 7 ~iI~I~G--~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 7 IIIGIAG--GSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 3678888 68999999999999988 35577788888775
No 337
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=35.71 E-value=48 Score=35.37 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=28.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|.|=|||- =|||-|++=|..+|++.|+||-..-
T Consensus 19 ~vI~VtGT----NGKgSt~~~l~~iL~~~g~~vg~~t 51 (397)
T TIGR01499 19 PVIHVAGT----NGKGSTCAFLESILRAAGYKVGLFT 51 (397)
T ss_pred CEEEEeCC----CChHHHHHHHHHHHHHcCCCeeEEe
Confidence 56777774 5999999999999999999997653
No 338
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=35.49 E-value=39 Score=33.27 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|-++||||- ||||+.++- .|-++|++|.+
T Consensus 9 k~vlItGas-~gIG~~ia~-----~l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVISGGT-RGIGKAIVY-----EFAQSGVNIAF 37 (260)
T ss_pred CEEEEeCCC-chHHHHHHH-----HHHHCCCEEEE
Confidence 789999886 889887664 35567887754
No 339
>PRK08703 short chain dehydrogenase; Provisional
Probab=35.34 E-value=44 Score=32.21 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++|||| -++||+.+ .+.|.++|++|.+.
T Consensus 7 k~vlItG~-sggiG~~l-----a~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTGA-SQGLGEQV-----AKAYAAAGATVILV 36 (239)
T ss_pred CEEEEECC-CCcHHHHH-----HHHHHHcCCEEEEE
Confidence 78999987 68888765 45566789988763
No 340
>PRK13973 thymidylate kinase; Provisional
Probab=35.33 E-value=75 Score=30.93 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
+||++-| +.|-||...+..|..-|+++|++|....
T Consensus 4 ~~IviEG--~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEG--GEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7999988 4799999999999999999999886554
No 341
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.31 E-value=43 Score=32.07 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|.|+||||- +++| +.+.+.|.++|++|..
T Consensus 6 ~~vlItGa~-g~iG-----~~~a~~l~~~G~~V~~ 34 (238)
T PRK05786 6 KKVAIIGVS-EGLG-----YAVAYFALKEGAQVCI 34 (238)
T ss_pred cEEEEECCC-chHH-----HHHHHHHHHCCCEEEE
Confidence 689999995 6666 4555777788988766
No 342
>PF12846 AAA_10: AAA-like domain
Probab=35.30 E-value=60 Score=32.09 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
-++|+|. +|-||=.++.++-.-+-.+|..|-++ ||
T Consensus 3 h~~i~G~--tGsGKT~~~~~l~~~~~~~g~~~~i~--D~ 37 (304)
T PF12846_consen 3 HTLILGK--TGSGKTTLLKNLLEQLIRRGPRVVIF--DP 37 (304)
T ss_pred eEEEECC--CCCcHHHHHHHHHHHHHHcCCCEEEE--cC
Confidence 4678885 79999999999998899999888777 76
No 343
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.26 E-value=40 Score=34.81 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=28.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
.++|-+++=||=| ..+.+++.+...++|+|||=+|
T Consensus 41 ~~~d~vi~iGGDG-----T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 41 QRAQLAIVIGGDG-----NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhccCCCcEEEEeCC
Confidence 4689999999854 4567777777778999999988
No 344
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=35.16 E-value=1.8e+02 Score=32.29 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=46.7
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCcc---------ccccCCChhhhhHHHHhccCCCEEE
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLE---------DATEKENPDAYKAAWKLLKGADGIL 367 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le---------~~~~~~~p~~y~~~~~~l~~~DGIl 367 (524)
..+|+++| .+. +=.+..+.|...|+.+.+. |..... .+++. .....|.. +.+.++|-|+
T Consensus 7 ~~kv~V~G-LG~---sG~a~a~~L~~~G~~v~v~------D~~~~~~~~~~~~~~~~~i~-~~~g~~~~-~~~~~~d~vV 74 (448)
T COG0771 7 GKKVLVLG-LGK---SGLAAARFLLKLGAEVTVS------DDRPAPEGLAAQPLLLEGIE-VELGSHDD-EDLAEFDLVV 74 (448)
T ss_pred CCEEEEEe-ccc---ccHHHHHHHHHCCCeEEEE------cCCCCccchhhhhhhccCce-eecCccch-hccccCCEEE
Confidence 35799998 554 4488899999999887765 322211 01100 00011111 2356789999
Q ss_pred ECCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 009814 368 VPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 368 lpGGfG~rg~eg~i~air~are~~iP~LG 396 (524)
+++|.-.. ...++.|+..++|++|
T Consensus 75 ~SPGi~~~-----~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 75 KSPGIPPT-----HPLVEAAKAAGIEIIG 98 (448)
T ss_pred ECCCCCCC-----CHHHHHHHHcCCcEEe
Confidence 98875332 2255556666666665
No 345
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=35.15 E-value=43 Score=32.96 Aligned_cols=30 Identities=47% Similarity=0.674 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 6 k~vlItGas-~gIG~~i-----a~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGGA-SGLGRAI-----VDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 7888654 45667789988764
No 346
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.06 E-value=3e+02 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=21.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.++ ++ ......++.+.+.++|+..+
T Consensus 54 ~~vdgii~~~~--~~--~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHG--RA--EVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecC--Ch--hhhHHHHHHHHHcCCCEEEe
Confidence 47999999653 21 11234567777888997655
No 347
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.97 E-value=2.4e+02 Score=23.97 Aligned_cols=79 Identities=18% Similarity=0.085 Sum_probs=44.8
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCC-ccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACD-LEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~-le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
+|++||- ..+....+.+.++..|+..... ..+. .+... ......+.++|.||++=++=+-..
T Consensus 1 ~vliVGG---~~~~~~~~~~~~~~~G~~~~~h------g~~~~~~~~~--------~~l~~~i~~aD~VIv~t~~vsH~~ 63 (97)
T PF10087_consen 1 SVLIVGG---REDRERRYKRILEKYGGKLIHH------GRDGGDEKKA--------SRLPSKIKKADLVIVFTDYVSHNA 63 (97)
T ss_pred CEEEEcC---CcccHHHHHHHHHHcCCEEEEE------ecCCCCccch--------hHHHHhcCCCCEEEEEeCCcChHH
Confidence 3788883 2334455566677788765432 1111 11100 001256889999998886644332
Q ss_pred hHHHHHHHHHHHcCCCEEE
Q 009814 378 QGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 378 eg~i~air~are~~iP~LG 396 (524)
+..+-+.|.+.++|+.=
T Consensus 64 --~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 64 --MWKVKKAAKKYGIPIIY 80 (97)
T ss_pred --HHHHHHHHHHcCCcEEE
Confidence 33455678888999863
No 348
>PRK06197 short chain dehydrogenase; Provisional
Probab=34.97 E-value=39 Score=34.22 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.|+||||. +|||+.++ +.|..+|++|.+.
T Consensus 17 k~vlItGas-~gIG~~~a-----~~l~~~G~~vi~~ 46 (306)
T PRK06197 17 RVAVVTGAN-TGLGYETA-----AALAAKGAHVVLA 46 (306)
T ss_pred CEEEEcCCC-CcHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 88887654 4466678877654
No 349
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.92 E-value=62 Score=33.05 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=96.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC-ccccCCCCccccccCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG-GEVDLDLGNYERFMDI 80 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg-~e~dldlg~yerf~~~ 80 (524)
+.|.||.| ..|.||-.+|+.|+..|...|+||-++-.|=| .|..|-..=+ ++. +-+++--|.+
T Consensus 58 ~~I~V~S~-kgGvGKStva~nLA~alA~~G~rVlliDaD~~--------gps~~~~l~~-~~~~g~~~~~~g~~------ 121 (265)
T COG0489 58 NVIAVTSG-KGGVGKSTVAVNLAAALAQLGKRVLLLDADLR--------GPSIPRMLGL-ENLPGLTELLAGEA------ 121 (265)
T ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCC--------CCchHHHhCC-CCCCCcccccCCCc------
Confidence 45666665 47999999999999999999999999877755 3334422111 111 2233333332
Q ss_pred CCCCCCcccchHhhHHHHhhh-hcCCCCCCeeEEcccc------hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc
Q 009814 81 KLTRDNNITTGKIYQSVIDKE-RKGDYLGKTVQVVPHI------TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD 153 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ke-r~g~ylg~tvqviphi------t~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgd 153 (524)
++.++..- .++=..+-.+. .|++ +..+++.|..+. ...+|++||+..==.||
T Consensus 122 -------------~~~~~~~~~~~~lsi~~~~~-~p~~~r~~l~s~~~~qll~~~~-------~~~~D~vIID~PP~~g~ 180 (265)
T COG0489 122 -------------LEPVIQHDGIKVLSILPLGP-VPVIPRGLLGSKAMLQLLEDVL-------WGEYDYVIIDTPPGTGD 180 (265)
T ss_pred -------------cccceecCccceEEEEecCC-CCCCChHhhhhHHHHHHHHHHh-------ccCCCEEEEeCCCCchH
Confidence 22333322 12211122222 4444 467788888875 44699999999877788
Q ss_pred cCcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEe
Q 009814 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (524)
Q Consensus 154 ies~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R 217 (524)
.. ++=++.-. +.+++ ..+.++....=.+.++..++..++..-++|.-
T Consensus 181 ~d-------~~i~~~~~--~g~vi--------Vt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~N 227 (265)
T COG0489 181 AD-------ATVLQRIP--DGVVI--------VTTPGKTALEDVKKAIDMLEKAGIPVLGVVEN 227 (265)
T ss_pred HH-------HHHHhccC--CeEEE--------EeCCccchHHHHHHHHHHHHhcCCceEEEEec
Confidence 32 22222211 11221 22346666666777888999999998888865
No 350
>PRK08339 short chain dehydrogenase; Provisional
Probab=34.78 E-value=43 Score=33.24 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- ||||+-+ .+.|-++|++|.+.
T Consensus 9 k~~lItGas-~gIG~ai-----a~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASS-KGIGFGV-----ARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEEE
Confidence 789999986 7887754 45577789988764
No 351
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.60 E-value=58 Score=37.05 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~--g~~v~~~k~dpy 42 (524)
+.|.++|. +|.||=.+++.|+..+..+ |.+|.++-.|+|
T Consensus 351 ~vIaLVGP--tGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 351 GVIALVGP--TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 35667775 7999999999999887765 579999999988
No 352
>PRK05876 short chain dehydrogenase; Provisional
Probab=34.54 E-value=44 Score=33.52 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- ||||+.+ .+.|.++|++|.+.
T Consensus 7 k~vlVTGas-~gIG~al-----a~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGA-SGIGLAT-----GTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 679999995 8998764 55677789988764
No 353
>PRK05993 short chain dehydrogenase; Provisional
Probab=34.48 E-value=43 Score=33.43 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=24.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|-++|||| -+|||+.+ .+.|.++|++|...--+
T Consensus 5 k~vlItGa-sggiG~~l-----a~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGC-SSGIGAYC-----ARALQSDGWRVFATCRK 37 (277)
T ss_pred CEEEEeCC-CcHHHHHH-----HHHHHHCCCEEEEEECC
Confidence 68999998 47888654 56677889998876433
No 354
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=34.43 E-value=41 Score=36.26 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeee-cccccC
Q 009814 12 SGLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNT 45 (524)
Q Consensus 12 s~lgkgi~~~s~g~ll~~~g~~v~~~k~-dpyln~ 45 (524)
-|.||=.+|+.++..|..+|+||-+|-+ ||--|.
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 3569999999999999999999999995 997664
No 355
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=34.34 E-value=60 Score=33.02 Aligned_cols=34 Identities=41% Similarity=0.400 Sum_probs=27.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
|.|+||||- |-+.+.+.+.|.++|++|...-.|+
T Consensus 6 k~vlVtG~~------G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 6 KVVCVTGAS------GYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CEEEEECCc------hHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 789999984 6667788888888999998765555
No 356
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.14 E-value=47 Score=33.28 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~-s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||-= ||||+.++ +.|-+.|++|.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA-----~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIA-----KQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHH-----HHHHhCCCEEEEe
Confidence 7899999986 69998765 4566789988653
No 357
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.08 E-value=45 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=22.9
Q ss_pred EEEEEeCC-ccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGG-VVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtgg-v~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|.++|||| --+|||+.++ +.|-++|++|.+
T Consensus 7 k~~lITGa~~~~GIG~a~a-----~~l~~~G~~v~~ 37 (261)
T PRK08690 7 KKILITGMISERSIAYGIA-----KACREQGAELAF 37 (261)
T ss_pred cEEEEECCCCCCcHHHHHH-----HHHHHCCCEEEE
Confidence 68999998 4689998765 446678988854
No 358
>PLN02913 dihydrofolate synthetase
Probab=34.06 E-value=28 Score=38.94 Aligned_cols=32 Identities=44% Similarity=0.610 Sum_probs=26.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.|=|||= =|||-|++-|..+|++.||+|-..
T Consensus 76 ~vIhVaGT----NGKGSt~a~l~~iL~~aG~~vG~f 107 (510)
T PLN02913 76 KAVHVAGT----KGKGSTAAFLSNILRAQGYSVGCY 107 (510)
T ss_pred cEEEEeCC----CchHHHHHHHHHHHHhcCCCeEEE
Confidence 45666663 599999999999999999999764
No 359
>PRK07024 short chain dehydrogenase; Provisional
Probab=33.93 E-value=44 Score=32.77 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=24.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
+|-++|||| -||||+.++ ..|..+|++|.+.=.
T Consensus 2 ~~~vlItGa-s~gIG~~la-----~~l~~~G~~v~~~~r 34 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALA-----REYARQGATLGLVAR 34 (257)
T ss_pred CCEEEEEcC-CcHHHHHHH-----HHHHHCCCEEEEEeC
Confidence 367999998 578887655 446677998877543
No 360
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.75 E-value=40 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=27.6
Q ss_pred CCCEEEECCCCCCCchhHHHHHHHHHHH--cCCCEEEEhHhH
Q 009814 362 GADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICLGM 401 (524)
Q Consensus 362 ~~DGIllpGGfG~rg~eg~i~air~are--~~iP~LGICLGm 401 (524)
++|-+++=||=| ..+.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDG-----T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDG-----TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcH-----HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 568999999854 46677777766 689999999885
No 361
>PRK00698 tmk thymidylate kinase; Validated
Probab=33.61 E-value=76 Score=29.90 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
++|+|.| .+|-||-..+..|...|...|+.|...
T Consensus 4 ~~I~ieG--~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 4 MFITIEG--IDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 7999998 478899999999999999888766544
No 362
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=33.55 E-value=81 Score=25.03 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=23.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|+++|. +|-||...+..+...| .|.++..+.
T Consensus 2 i~i~G~--~gsGKst~~~~l~~~l--~~~~~~~i~ 32 (69)
T cd02019 2 IAITGG--SGSGKSTVAKKLAEQL--GGRSVVVLD 32 (69)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence 678886 5667988888877777 577777664
No 363
>PRK05866 short chain dehydrogenase; Provisional
Probab=33.55 E-value=42 Score=34.12 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.|+|||| -||||+.++ +.|.++|++|.+.
T Consensus 41 k~vlItGa-sggIG~~la-----~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGA-SSGIGEAAA-----EQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCEEEEE
Confidence 67999998 478877654 4566779887664
No 364
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=33.48 E-value=48 Score=35.30 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHc
Q 009814 311 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREH 390 (524)
Q Consensus 311 day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~ 390 (524)
++..-+.+.|..+|++..+. ..+.+. +.+..+|.||=.||-|. .+.|.-..+..
T Consensus 75 n~~~~~~~~l~k~giesklv------~R~~ls---------------q~i~waD~VisvGGDGT-----fL~Aasrv~~~ 128 (395)
T KOG4180|consen 75 NAIKFCQEELSKAGIESKLV------SRNDLS---------------QPIRWADMVISVGGDGT-----FLLAASRVIDD 128 (395)
T ss_pred HHHHHHHHHHhhCCcceeee------ehhhcc---------------CcCchhhEEEEecCccc-----eeehhhhhhcc
Confidence 45566789999999986554 333331 23678899999998764 33444457788
Q ss_pred CCCEEEE
Q 009814 391 RIPYLGI 397 (524)
Q Consensus 391 ~iP~LGI 397 (524)
.+|++||
T Consensus 129 ~~PViGv 135 (395)
T KOG4180|consen 129 SKPVIGV 135 (395)
T ss_pred CCceeee
Confidence 9999998
No 365
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.40 E-value=52 Score=35.79 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtgg----------v~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|-++|||| .+|--.-|....++...|..+|.+|+.+-
T Consensus 189 k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 189 KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 57899999 67777777788889999999999998864
No 366
>PRK05717 oxidoreductase; Validated
Probab=33.29 E-value=46 Score=32.53 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- ++||+.++ +.|-++|.+|.++
T Consensus 11 k~vlItG~s-g~IG~~~a-----~~l~~~g~~v~~~ 40 (255)
T PRK05717 11 RVALVTGAA-RGIGLGIA-----AWLIAEGWQVVLA 40 (255)
T ss_pred CEEEEeCCc-chHHHHHH-----HHHHHcCCEEEEE
Confidence 779999995 66666544 6666778888776
No 367
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=33.28 E-value=51 Score=33.73 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=26.9
Q ss_pred EEEeCCccCCcchHHHHHH-HHHHHHHCCCeeEEeeecc
Q 009814 4 VLVTGGVVSGLGKGVTASS-IGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s-~g~ll~~~g~~v~~~k~dp 41 (524)
|-|||= -|.||=..||. +-++++..|++|.++--||
T Consensus 3 IaI~GK--GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 3 IAITGK--GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred EEEecC--CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 445542 36799999999 5555555559999999999
No 368
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=32.94 E-value=2.4e+02 Score=24.27 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=43.1
Q ss_pred EEeccCCCcc----hHHHHHHHHHHcCCceeEEeeeEEe-eCCCccccccCCChhhhh-HHHHhccCCCEEEECCCCCCC
Q 009814 302 MVGKYTGLSD----AYLSILKALLHASVDLRKKLVIDWI-PACDLEDATEKENPDAYK-AAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 302 iVGkY~~~~d----ay~SI~~aL~~ag~~~~v~v~i~~i-~s~~le~~~~~~~p~~y~-~~~~~l~~~DGIllpGGfG~r 375 (524)
|-|+++.+.| +.....+.|+..|..+ ++..+. ..+.+ +.+.|= .....|..||+|++-+| -.
T Consensus 3 IaGPmtG~~~~N~~~f~~~a~~L~~~G~~v---vnPa~~~~~~~~-------~~~~ym~~~l~~L~~cD~i~~l~g--We 70 (92)
T PF14359_consen 3 IAGPMTGLPDYNRPAFNAAAKRLRAKGYEV---VNPAELGIPEGL-------SWEEYMRICLAMLSDCDAIYMLPG--WE 70 (92)
T ss_pred EeCCcCCCcchHHHHHHHHHHHHHHCCCEE---eCchhhCCCCCC-------CHHHHHHHHHHHHHhCCEEEEcCC--cc
Confidence 3345554443 4456778899988433 233332 01111 111221 12235679999976553 33
Q ss_pred chhHHHHHHHHHHHcCCCEE
Q 009814 376 GVQGKILAAKYAREHRIPYL 395 (524)
Q Consensus 376 g~eg~i~air~are~~iP~L 395 (524)
.-.|.......|+..++|++
T Consensus 71 ~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 71 NSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred cCcchHHHHHHHHHCCCeEe
Confidence 33445556667778788764
No 369
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=32.93 E-value=2.2e+02 Score=27.39 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=31.0
Q ss_pred cchHHHH--HHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 009814 14 LGKGVTA--SSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (524)
Q Consensus 14 lgkgi~~--~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (524)
+|-|-|+ ..+-..+. .+.+|.+++-|++-++|+-.+.... -+|....+|.-+
T Consensus 31 ~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~-~~~~~l~~gcic 84 (207)
T TIGR00073 31 PGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYG-APAIQINTGKEC 84 (207)
T ss_pred CCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcC-CcEEEEcCCCcc
Confidence 4445444 44443332 4589999999998888876665321 145555555443
No 370
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.82 E-value=82 Score=34.26 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=42.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC-C-CCccccceEEEccCCccccCCCCc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG-T-MSPFEHGEVFVLDDGGEVDLDLGN 73 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~g-t-msp~~hgevfv~~dg~e~dldlg~ 73 (524)
|.|-||| +-||-.|++=|+.+|+..|+++..-. |+-.. + +.+..-.+++|.+=+ |-+||+-+
T Consensus 115 ~vI~VTG----T~GKTTTt~ll~~iL~~~g~~~~~~g-----nig~~~~~~~~~~~~~~~V~E~~-~~~ld~t~ 178 (460)
T PRK01390 115 PFIAITG----TNGKSTTTALIAHILREAGRDVQMGG-----NIGTAVLTLEPPPAGRVYVLELS-SYQIDLAP 178 (460)
T ss_pred CEEEEeC----CCcHHHHHHHHHHHHHhcCCCeEEcC-----ccchhhhhcccCCCCCEEEEEcC-cccccccc
Confidence 5678888 67999999999999999999875432 32211 1 112223489999877 44566544
No 371
>PRK00889 adenylylsulfate kinase; Provisional
Probab=32.55 E-value=86 Score=29.11 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=30.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
+.|.++| .+|-||=..|..|...|+..|.+|..+--|.
T Consensus 5 ~~i~~~G--~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTG--LSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4566776 6899999999999999999998887775553
No 372
>PRK09620 hypothetical protein; Provisional
Probab=32.47 E-value=61 Score=32.45 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.5
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtgg----------v~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-|+||+| .+|--=-|-+.+.|...|..+|++|+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 56889988 6777777999999999999999999886
No 373
>PRK07831 short chain dehydrogenase; Provisional
Probab=32.45 E-value=55 Score=32.11 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||-=||||+.++ +.|.++|++|.+.
T Consensus 18 k~vlItG~sg~gIG~~ia-----~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA-----RRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHH-----HHHHHcCCEEEEE
Confidence 679999997568886554 6677889987663
No 374
>PRK05642 DNA replication initiation factor; Validated
Probab=32.25 E-value=33 Score=34.13 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=45.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg 64 (524)
.+|+.|. ||.||==.+.+++.-+..+|.+|..+..+=+.+-.+..+..|+...+.+.||=
T Consensus 47 ~l~l~G~--~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGK--DGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDL 106 (234)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEech
Confidence 4678886 79999988999999888899999888776655543444555666677777763
No 375
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.11 E-value=52 Score=32.11 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|.++||||- ||||+. +.+.|-++|++|.+
T Consensus 8 k~~lItGas-~gIG~~-----~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGT-RGIGRA-----IAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCEEEE
Confidence 789999994 888865 45667778998865
No 376
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.99 E-value=63 Score=25.83 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccc
Q 009814 14 LGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFE 54 (524)
Q Consensus 14 lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~ 54 (524)
+|=|++.-+.+..|+.+|++|+++--.+++- |.+..+.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G---G~~~~~~ 39 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDRLG---GRARSFR 39 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSSSS---GGGCEEE
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcccC---cceeEEE
Confidence 4778999999999999999999999888863 4444443
No 377
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=31.90 E-value=46 Score=32.65 Aligned_cols=29 Identities=38% Similarity=0.383 Sum_probs=21.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
-++||||- +|||+.++ +.|..+|++|.+.
T Consensus 2 ~vlItGas-~gIG~aia-----~~l~~~G~~V~~~ 30 (259)
T PRK08340 2 NVLVTASS-RGIGFNVA-----RELLKKGARVVIS 30 (259)
T ss_pred eEEEEcCC-cHHHHHHH-----HHHHHcCCEEEEE
Confidence 38899985 78887654 5677789988765
No 378
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.51 E-value=2e+02 Score=27.21 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=21.5
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.+.... ... ++.+.+.++|+..+
T Consensus 54 ~~~d~iii~~~~~~-----~~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 54 RRVDGIILAPSRLD-----DEL-LEELAALGIPVVLV 84 (264)
T ss_pred cCcCEEEEecCCcc-----hHH-HHHHHHcCCCEEEe
Confidence 47999998775422 112 77788889998766
No 379
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=31.34 E-value=55 Score=27.13 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEE-EccCCccccCCC
Q 009814 16 KGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF-VLDDGGEVDLDL 71 (524)
Q Consensus 16 kgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevf-v~~dg~e~dldl 71 (524)
..++.+.+=..|+..||+|.-+|+|- |.+ =||. ...||...++.+
T Consensus 27 ~~~~~~~~~~~l~~~G~~v~~ve~~~----~g~-------yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 27 DWLSIEQAVAKLEAQGYQVREVEFDD----DGC-------YEVEARDKDGKKVEVYV 72 (83)
T ss_pred ccCCHHHHHHHHHhcCCceEEEEEcC----CCE-------EEEEEEECCCCEEEEEE
Confidence 34456777788999999999999941 111 2888 778898887754
No 380
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=31.21 E-value=40 Score=35.29 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=5.9
Q ss_pred HHHHHHHCCCeeEEe
Q 009814 23 IGVLLKACGLRVTCI 37 (524)
Q Consensus 23 ~g~ll~~~g~~v~~~ 37 (524)
||++|+++||||-+|
T Consensus 38 IgR~Le~~GyrVgIi 52 (302)
T PF08497_consen 38 IGRVLEAHGYRVGII 52 (302)
T ss_pred HHHHHHHcCCeEEEE
Confidence 334444444444333
No 381
>PRK08017 oxidoreductase; Provisional
Probab=31.11 E-value=58 Score=31.58 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
|-|+|||| -+++|+ ++.+.|.++|++|.++-.
T Consensus 3 k~vlVtGa-sg~IG~-----~la~~l~~~g~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGC-SSGIGL-----EAALELKRRGYRVLAACR 34 (256)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeC
Confidence 67999998 466665 455667788999877543
No 382
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=31.09 E-value=58 Score=33.65 Aligned_cols=54 Identities=33% Similarity=0.567 Sum_probs=36.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~ 79 (524)
|=+|| .-|.||=.....+++.|.++|.+|.++-+||= |||-.|-. ||.=-|.-+
T Consensus 32 iGiTG--~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--------Sp~tGGAl------------LGDRiRM~~ 85 (266)
T PF03308_consen 32 IGITG--PPGAGKSTLIDALIRELRERGKRVAVLAVDPS--------SPFTGGAL------------LGDRIRMQE 85 (266)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--------GGCC---S------------S--GGGCHH
T ss_pred EEeeC--CCCCcHHHHHHHHHHHHhhcCCceEEEEECCC--------CCCCCCcc------------cccHHHhcC
Confidence 34566 35889999999999999999999999999995 78888875 776666543
No 383
>PRK06523 short chain dehydrogenase; Provisional
Probab=31.08 E-value=63 Score=31.49 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=25.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|.|+||||- +|||+ ++.+.|.++|++|.+.--+
T Consensus 10 k~vlItGas-~gIG~-----~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 10 KRALVTGGT-KGIGA-----ATVARLLEAGARVVTTARS 42 (260)
T ss_pred CEEEEECCC-CchhH-----HHHHHHHHCCCEEEEEeCC
Confidence 679999984 56764 5666777889999887554
No 384
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.80 E-value=59 Score=31.94 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.0
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv-~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- .+|||+. +.+.|.++|.+|.+.
T Consensus 7 k~vlVtGas~~~giG~~-----~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAA-----ICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHH-----HHHHHHHCCCeEEEE
Confidence 789999998 4899965 456677789887654
No 385
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.74 E-value=2.5e+02 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=26.6
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhH
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICL 399 (524)
..-|-+|+-.-.|. ....+++++.|+++++|+++||-
T Consensus 46 ~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 46 TPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 34466665544443 34568899999999999999975
No 386
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=30.22 E-value=65 Score=29.84 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll 27 (524)
+++|+|+|+ +|-||...+..|..-+
T Consensus 3 ~~ii~i~G~--~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG--PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 468999998 9999999998887643
No 387
>PRK07806 short chain dehydrogenase; Provisional
Probab=30.17 E-value=61 Score=31.27 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|-++||||- |+||+.++- .|.++|++|.+
T Consensus 7 k~vlItGas-ggiG~~l~~-----~l~~~G~~V~~ 35 (248)
T PRK07806 7 KTALVTGSS-RGIGADTAK-----ILAGAGAHVVV 35 (248)
T ss_pred cEEEEECCC-CcHHHHHHH-----HHHHCCCEEEE
Confidence 779999984 788887754 34567887765
No 388
>PRK07814 short chain dehydrogenase; Provisional
Probab=30.07 E-value=58 Score=32.07 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
|.++|||| -++||+ ++.+.|.++|++|.+.-.+|
T Consensus 11 ~~vlItGa-sggIG~-----~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 11 QVAVVTGA-GRGLGA-----AIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 67899998 456665 45577778999987765544
No 389
>PRK08309 short chain dehydrogenase; Provisional
Probab=29.97 E-value=84 Score=30.04 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
++|||| ||+| .+ +.+.|.++|++|.+.
T Consensus 3 vlVtGG--tG~g----g~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 3 ALVIGG--TGML----KR-VSLWLCEKGFHVSVI 29 (177)
T ss_pred EEEECc--CHHH----HH-HHHHHHHCcCEEEEE
Confidence 789999 4554 23 677777899998864
No 390
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=29.95 E-value=54 Score=32.17 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHHHHH--CCCeeEEeeec
Q 009814 13 GLGKGVTASSIGVLLKA--CGLRVTCIKID 40 (524)
Q Consensus 13 ~lgkgi~~~s~g~ll~~--~g~~v~~~k~d 40 (524)
|=|||-|+|++|..|++ +|++|.++.|=
T Consensus 30 g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 30 GNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45899999999998886 57888887763
No 391
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.86 E-value=3.8e+02 Score=26.55 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=22.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.+...+ .....++.+++.++|+..+
T Consensus 54 ~~vdgiii~~~~~~----~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 54 KGVDVLVIAPVDGE----ALASAVEKAADAGIPVIAY 86 (288)
T ss_pred cCCCEEEEecCChh----hHHHHHHHHHHCCCCEEEE
Confidence 47999998763222 1234567777889998765
No 392
>PRK06720 hypothetical protein; Provisional
Probab=29.79 E-value=60 Score=30.65 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++|||| -+|+|..++. .|..+|++|.+.
T Consensus 17 k~~lVTGa-~~GIG~aia~-----~l~~~G~~V~l~ 46 (169)
T PRK06720 17 KVAIVTGG-GIGIGRNTAL-----LLAKQGAKVIVT 46 (169)
T ss_pred CEEEEecC-CChHHHHHHH-----HHHHCCCEEEEE
Confidence 68999999 4678877653 455678776644
No 393
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.75 E-value=37 Score=32.75 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccC-CCEEEECCCCCCCchhHHHHHHHHHHHcCC
Q 009814 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG-ADGILVPGGFGNRGVQGKILAAKYAREHRI 392 (524)
Q Consensus 314 ~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~-~DGIllpGGfG~rg~eg~i~air~are~~i 392 (524)
.-+.+.|+.+|..+. ...+. + ++.+. -..+..+.+.+ +|.|+..||-|--.-+-..+|++...++.+
T Consensus 30 ~~l~~~L~~ag~~~~-~~~iV--~-D~~~~--------I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKei 97 (169)
T COG0521 30 PLLVELLEEAGHNVA-AYTIV--P-DDKEQ--------IRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEI 97 (169)
T ss_pred hHHHHHHHHcCCccc-eEEEe--C-CCHHH--------HHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhccC
Confidence 456788999998872 22222 2 22110 00001122233 899999998776333334688888899889
Q ss_pred CEE
Q 009814 393 PYL 395 (524)
Q Consensus 393 P~L 395 (524)
|=|
T Consensus 98 pGF 100 (169)
T COG0521 98 PGF 100 (169)
T ss_pred CcH
Confidence 943
No 394
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=29.70 E-value=63 Score=34.87 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=27.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.|=|||= =|||-|++=|..+|++.|++|-..
T Consensus 50 ~~I~VtGT----NGKgSt~~~l~~iL~~~G~~vG~~ 81 (416)
T PRK10846 50 FVFTVAGT----NGKGTTCRTLESILMAAGYRVGVY 81 (416)
T ss_pred CEEEEECC----CChHHHHHHHHHHHHHcCCCceEE
Confidence 45667775 499999999999999999999765
No 395
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.69 E-value=58 Score=31.24 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|.++||||- ++||+.+ .+.|.++|++|.+
T Consensus 6 ~~vlItG~~-~~iG~~l-----a~~l~~~g~~v~~ 34 (245)
T PRK12937 6 KVAIVTGAS-RGIGAAI-----ARRLAADGFAVAV 34 (245)
T ss_pred CEEEEeCCC-chHHHHH-----HHHHHHCCCEEEE
Confidence 789999994 7777654 5777788887754
No 396
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=29.64 E-value=2.6e+02 Score=27.18 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.+...+ . ....++.+.+.++|+..+
T Consensus 54 ~~vdgiIi~~~~~~-~---~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 54 QGVDVIILAPVVET-G---WDPVLKEAKAAGIPVILV 86 (273)
T ss_pred cCCCEEEEcCCccc-c---chHHHHHHHHCCCCEEEE
Confidence 47999999763211 1 123567777888887665
No 397
>PRK06182 short chain dehydrogenase; Validated
Probab=29.57 E-value=62 Score=31.99 Aligned_cols=31 Identities=42% Similarity=0.483 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|.|+|||| -||||+.++ +.|.++|++|...-
T Consensus 4 k~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGA-SSGIGKATA-----RRLAAQGYTVYGAA 34 (273)
T ss_pred CEEEEECC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 78999997 478887654 56667899988653
No 398
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.54 E-value=1.5e+02 Score=32.32 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCC----------ccccccCC---
Q 009814 282 KEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACD----------LEDATEKE--- 348 (524)
Q Consensus 282 ~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~----------le~~~~~~--- 348 (524)
+++.++...+... +|+++| ++..+ .++.+.|...|+.+.+. |... ++......
T Consensus 3 ~~~~~~~~~~~~~----~i~v~G-~G~sG---~a~a~~L~~~G~~V~~~------D~~~~~~~~~~~~~l~~~gi~~~~~ 68 (458)
T PRK01710 3 RDFNEFKKFIKNK----KVAVVG-IGVSN---IPLIKFLVKLGAKVTAF------DKKSEEELGEVSNELKELGVKLVLG 68 (458)
T ss_pred chHHHHhhhhcCC----eEEEEc-ccHHH---HHHHHHHHHCCCEEEEE------CCCCCccchHHHHHHHhCCCEEEeC
Q ss_pred --ChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 009814 349 --NPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 349 --~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LG 396 (524)
.+ +.+.++|-|++|.| +.-....++.|++.++|+.+
T Consensus 69 ~~~~-------~~~~~~dlVV~Spg-----i~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 69 ENYL-------DKLDGFDVIFKTPS-----MRIDSPELVKAKEEGAYITS 106 (458)
T ss_pred CCCh-------HHhccCCEEEECCC-----CCCCchHHHHHHHcCCcEEe
No 399
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=29.52 E-value=46 Score=30.20 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=26.3
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEE
Q 009814 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (524)
Q Consensus 360 l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~L 395 (524)
|+.||+++++.=+|...-.|.-..++.|.+.++|++
T Consensus 77 L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~ 112 (116)
T PF09152_consen 77 LDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVF 112 (116)
T ss_dssp HHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEE
T ss_pred HHhcceeEEecCCCccccccHHHHHHHHHHcCCeEE
Confidence 578999999998887766788889999999999986
No 400
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.49 E-value=62 Score=31.63 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- +|||+. +.+.|-++|++|.+.
T Consensus 8 k~vlVtGas-~gIG~~-----~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAA-QGIGAA-----IARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 788765 446677889988754
No 401
>PRK09271 flavodoxin; Provisional
Probab=29.32 E-value=2.1e+02 Score=26.59 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=23.5
Q ss_pred hccCCCEEEECC---CCCC-C-chhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 359 LLKGADGILVPG---GFGN-R-GVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 359 ~l~~~DGIllpG---GfG~-r-g~eg~i~air~are~~iP~LGICLG 400 (524)
.+.++|+|+|.- |.|. | .+...++.+...+.+++++.-+++|
T Consensus 48 ~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 48 DPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 345789987766 3454 3 3455555555544345555555553
No 402
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=29.28 E-value=61 Score=33.43 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=22.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
+|+++|||. -||||+- +.+.|..+|++|..+
T Consensus 6 ~~~~lITGA-SsGIG~~-----~A~~lA~~g~~liLv 36 (265)
T COG0300 6 GKTALITGA-SSGIGAE-----LAKQLARRGYNLILV 36 (265)
T ss_pred CcEEEEECC-CchHHHH-----HHHHHHHCCCEEEEE
Confidence 367888875 4777764 457788888887766
No 403
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.27 E-value=67 Score=31.98 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=26.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
|+|||| .|-+-+.|..-|.++|+.|..+.-.+
T Consensus 3 ILVtG~------tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGG------AGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEEcC------cccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999998 56677899999999999888776433
No 404
>PRK05599 hypothetical protein; Provisional
Probab=29.20 E-value=49 Score=32.41 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=20.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++|||| -+|||+.++.+ |. .|.+|.+.
T Consensus 1 ~~vlItGa-s~GIG~aia~~-----l~-~g~~Vil~ 29 (246)
T PRK05599 1 MSILILGG-TSDIAGEIATL-----LC-HGEDVVLA 29 (246)
T ss_pred CeEEEEeC-ccHHHHHHHHH-----Hh-CCCEEEEE
Confidence 46899999 59999988764 33 38777553
No 405
>PRK07985 oxidoreductase; Provisional
Probab=29.18 E-value=62 Score=32.83 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- +|||+. +.+.|.++|++|.+.
T Consensus 50 k~vlITGas-~gIG~a-----ia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 50 RKALVTGGD-SGIGRA-----AAIAYAREGADVAIS 79 (294)
T ss_pred CEEEEECCC-CcHHHH-----HHHHHHHCCCEEEEe
Confidence 679999984 788864 456677789987653
No 406
>PHA02754 hypothetical protein; Provisional
Probab=29.16 E-value=48 Score=26.58 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=22.2
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeee
Q 009814 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (524)
Q Consensus 158 pf~ea~rq~~~~~~~~n~~~ih~~~vp~~ 186 (524)
-|-||+||++..+. +.-+|||---+-+.
T Consensus 15 ~Fke~MRelkD~LS-e~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILS-EAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHh-hCceEEEEEEEEEe
Confidence 58999999999886 66789997655554
No 407
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=29.10 E-value=2.7e+02 Score=27.06 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=21.5
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 47999988653211 1223567778889998765
No 408
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.09 E-value=2.8e+02 Score=29.82 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCCcc--chhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCC-CCeEEEEEeccCCCcchHHHHHHHHHH
Q 009814 246 DVPNI--WHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLH-EPVRIAMVGKYTGLSDAYLSILKALLH 322 (524)
Q Consensus 246 dvdti--y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~-~~v~IaiVGkY~~~~day~SI~~aL~~ 322 (524)
++||. +++-..|.++|.+-.+-+.+ ..++|.+++.++.... ..+.| -+| ..+..+.-+++|..
T Consensus 52 nMdtv~~~~mA~~la~~g~~~~iHk~~---------~~e~~~~~v~~~~~~~~~~~~v-svG----~~~~d~er~~~L~~ 117 (343)
T TIGR01305 52 NMDTVGTFEMAAALSQHSIFTAIHKHY---------SVDEWKAFATNSSPDCLQNVAV-SSG----SSDNDLEKMTSILE 117 (343)
T ss_pred CCCcccCHHHHHHHHHCCCeEEEeeCC---------CHHHHHHHHHhhcccccceEEE-Eec----cCHHHHHHHHHHHh
Confidence 56655 34444454444443332222 3567888888765432 22333 223 34455566677777
Q ss_pred cC--CceeEEee------------eEEeeCCC----ccccccCCChhhhhHHHHhc-cCCCEEEECCCCCC----C---c
Q 009814 323 AS--VDLRKKLV------------IDWIPACD----LEDATEKENPDAYKAAWKLL-KGADGILVPGGFGN----R---G 376 (524)
Q Consensus 323 ag--~~~~v~v~------------i~~i~s~~----le~~~~~~~p~~y~~~~~~l-~~~DGIllpGGfG~----r---g 376 (524)
++ .++-+. + +.|+.... +-..|+. .| ..+.+.+ ..+|+|.|+=|||. | |
T Consensus 118 a~~~~d~ivi-D~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~-T~---e~a~~Li~aGAD~ikVgiGpGSicttR~~~G 192 (343)
T TIGR01305 118 AVPQLKFICL-DVANGYSEHFVEFVKLVREAFPEHTIMAGNVV-TG---EMVEELILSGADIVKVGIGPGSVCTTRTKTG 192 (343)
T ss_pred cCCCCCEEEE-ECCCCcHHHHHHHHHHHHhhCCCCeEEEeccc-CH---HHHHHHHHcCCCEEEEcccCCCcccCceeCC
Confidence 75 443322 1 12221100 0011221 12 2223332 57999999877876 2 2
Q ss_pred -----hhHHHHHHHHHHHcCCCEE---EE-hHhHHHHHHHhcccc
Q 009814 377 -----VQGKILAAKYAREHRIPYL---GI-CLGMQVAVIEFARSV 412 (524)
Q Consensus 377 -----~eg~i~air~are~~iP~L---GI-CLGmQll~ie~gr~v 412 (524)
+.-..++.+.++..++|++ || +-|.-.-++++|++.
T Consensus 193 vg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~ 237 (343)
T TIGR01305 193 VGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADF 237 (343)
T ss_pred CCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCE
Confidence 2233344444555578887 34 456777788888764
No 409
>PRK06761 hypothetical protein; Provisional
Probab=29.06 E-value=64 Score=33.53 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=29.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
+.|+|+|- +|-||-..+..+...|..+|++|..
T Consensus 4 ~lIvI~G~--~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGL--PGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhcCcCceEEEE
Confidence 68999995 8999999999999999999998876
No 410
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=28.85 E-value=68 Score=32.53 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=23.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRV 34 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~-~g~~v 34 (524)
|+.|-+|||.-|| | |++.++|++ .|+.|
T Consensus 1 M~iIGlTGgIgSG--K----StVs~~L~~~~G~~v 29 (244)
T PTZ00451 1 MILIGLTGGIACG--K----STVSRILREEHHIEV 29 (244)
T ss_pred CeEEEEECCCCCC--H----HHHHHHHHHHcCCeE
Confidence 7889999998775 5 688899998 59877
No 411
>PRK09242 tropinone reductase; Provisional
Probab=28.78 E-value=61 Score=31.62 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++|||| -+|||+.+ .+.|.++|++|.++
T Consensus 10 k~~lItGa-~~gIG~~~-----a~~l~~~G~~v~~~ 39 (257)
T PRK09242 10 QTALITGA-SKGIGLAI-----AREFLGLGADVLIV 39 (257)
T ss_pred CEEEEeCC-CchHHHHH-----HHHHHHcCCEEEEE
Confidence 78999988 57777654 45566788877665
No 412
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.78 E-value=1.5e+02 Score=30.87 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=26.9
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhH
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICL 399 (524)
..+|-+++-||=| ....+++.....++|++||=.
T Consensus 56 ~~~d~vi~~GGDG-----T~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDG-----TVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcH-----HHHHHHHHhccCCCCEEEEec
Confidence 4689999999854 356677777677999999987
No 413
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.78 E-value=63 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=22.1
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~-s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|-++||||-= +|||+.+ .+.|..+|++|.+
T Consensus 9 k~~lITGas~~~GIG~a~-----a~~la~~G~~v~~ 39 (260)
T PRK06603 9 KKGLITGIANNMSISWAI-----AQLAKKHGAELWF 39 (260)
T ss_pred cEEEEECCCCCcchHHHH-----HHHHHHcCCEEEE
Confidence 7899999964 4777754 4667778988754
No 414
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.76 E-value=74 Score=30.35 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
-++++|. +|.||=-.|++||.-+-.+|++|..++.+-.+
T Consensus 49 ~l~l~G~--~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 49 NLILYGP--PGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEEEhh--HhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 4788886 79999999999999888899999998876443
No 415
>PLN02780 ketoreductase/ oxidoreductase
Probab=28.69 E-value=53 Score=34.09 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=24.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
|.++|||| -||||+.++ +.|..+|++|.+.=.
T Consensus 54 ~~~lITGA-s~GIG~alA-----~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGP-TDGIGKGFA-----FQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCCEEEEEC
Confidence 68999998 588887654 567778999887643
No 416
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=28.66 E-value=2.4e+02 Score=30.72 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=45.4
Q ss_pred eEEEEEeccCCCcchHHH-HHHHHHHcCCceeEEeeeEEeeCCC------ccccccCCChhhhhHHHHhccCCCEEEECC
Q 009814 298 VRIAMVGKYTGLSDAYLS-ILKALLHASVDLRKKLVIDWIPACD------LEDATEKENPDAYKAAWKLLKGADGILVPG 370 (524)
Q Consensus 298 v~IaiVGkY~~~~day~S-I~~aL~~ag~~~~v~v~i~~i~s~~------le~~~~~~~p~~y~~~~~~l~~~DGIllpG 370 (524)
.+|.++| .+. +=.| +.+.|...|+.+.+. |... ++...+.... .+ ..+.+.++|-|++|.
T Consensus 8 ~~v~viG-~G~---sG~s~~a~~L~~~G~~V~~~------D~~~~~~~~~l~~~gi~~~~-~~--~~~~~~~~d~vv~sp 74 (461)
T PRK00421 8 KRIHFVG-IGG---IGMSGLAEVLLNLGYKVSGS------DLKESAVTQRLLELGAIIFI-GH--DAENIKDADVVVYSS 74 (461)
T ss_pred CEEEEEE-Ech---hhHHHHHHHHHhCCCeEEEE------CCCCChHHHHHHHCCCEEeC-CC--CHHHCCCCCEEEECC
Confidence 4688887 543 4467 689999999987764 3211 1110100000 00 013356789999988
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCEEE
Q 009814 371 GFGNRGVQGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 371 GfG~rg~eg~i~air~are~~iP~LG 396 (524)
|.... ...++.|++.++|+++
T Consensus 75 gi~~~-----~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 75 AIPDD-----NPELVAARELGIPVVR 95 (461)
T ss_pred CCCCC-----CHHHHHHHHCCCcEEe
Confidence 76432 1245666666777765
No 417
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=28.56 E-value=96 Score=29.04 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=38.9
Q ss_pred EEEECCCCCCCch---hHH-HHHHHHHHHcCCCEEEEhHh--------HHHHHHHhccccccccCCCCcc
Q 009814 365 GILVPGGFGNRGV---QGK-ILAAKYAREHRIPYLGICLG--------MQVAVIEFARSVLNLRDANSTE 422 (524)
Q Consensus 365 GIllpGGfG~rg~---eg~-i~air~are~~iP~LGICLG--------mQll~ie~gr~v~gl~~a~S~E 422 (524)
-|+++-|....+. ... .++++.+++.+++++.|+.| |+-++-+-|++.+...++++.+
T Consensus 102 ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~ 171 (178)
T cd01451 102 IVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADA 171 (178)
T ss_pred EEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHH
Confidence 4577767654322 122 56678888999999999987 5666666677776666665543
No 418
>PRK09186 flagellin modification protein A; Provisional
Probab=28.48 E-value=67 Score=31.09 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|.++||||- +|||+.+ .+.|.++|++|.+.-
T Consensus 5 k~vlItGas-~giG~~~-----a~~l~~~g~~v~~~~ 35 (256)
T PRK09186 5 KTILITGAG-GLIGSAL-----VKAILEAGGIVIAAD 35 (256)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEEe
Confidence 789999994 6777654 566678899987763
No 419
>PLN00198 anthocyanidin reductase; Provisional
Probab=28.33 E-value=90 Score=32.04 Aligned_cols=35 Identities=37% Similarity=0.372 Sum_probs=26.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
+|.|+||||- |-+.+.|...|..+|++|..+-.|+
T Consensus 9 ~~~vlItG~~------GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 9 KKTACVIGGT------GFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCeEEEECCc------hHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3679999985 5666777788888999998765554
No 420
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=28.28 E-value=78 Score=30.40 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v 34 (524)
|+-|.||||.-| ||. +++.+|++.|+.|
T Consensus 2 ~~~i~ltG~~gs--GKs----t~~~~l~~~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGS--GKS----TVANLFAELGAPV 29 (194)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHcCCEE
Confidence 577999999755 564 5666777777643
No 421
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=28.09 E-value=61 Score=31.21 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=26.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v 34 (524)
-|.+|| +||-||-..|.+|-+.|-.||.--
T Consensus 33 viWiTG--LSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 33 VIWITG--LSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred EEEEec--cCCCCchhHHHHHHHHHHhcCceE
Confidence 378888 899999999999999999988643
No 422
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=28.09 E-value=1.4e+02 Score=31.61 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred cchHhhHHHHhhhhcCC-------CCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc----
Q 009814 89 TTGKIYQSVIDKERKGD-------YLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 157 (524)
Q Consensus 89 t~g~iy~~vi~ker~g~-------ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~---- 157 (524)
....+|....++-|--. +.|.|.+-.|+ ++..+..-| ....|++++|++|| .|.=+-
T Consensus 75 ~~~S~y~rl~~~n~c~hrd~qN~G~sGatSrdl~~-------~l~~Ll~n~---~~~~P~lVtI~lGg--ND~C~g~~d~ 142 (305)
T cd01826 75 FTDSLYLRLRERNRCNHRDYQNLGVNGASSRNLLS-------IIKSIARNR---TTDKPALVIYSMIG--NDVCNGPNDT 142 (305)
T ss_pred ccccHHHHHhhccccchhhHHHhccchhhhHHHHH-------HHHHhcccc---ccCCCeEEEEEecc--chhhcCCCcc
Confidence 34568988888766444 47777666654 444433111 23469999999999 887431
Q ss_pred -----h------HHHHHHHhhhhcCCC
Q 009814 158 -----P------FIEALGQFSYRVGPG 173 (524)
Q Consensus 158 -----p------f~ea~rq~~~~~~~~ 173 (524)
| +.+++++||....+.
T Consensus 143 ~~~tp~eefr~NL~~~L~~Lr~~lP~~ 169 (305)
T cd01826 143 INHTTPEEFYENVMEALKYLDTKLPNG 169 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 788899998887663
No 423
>PRK08267 short chain dehydrogenase; Provisional
Probab=27.99 E-value=84 Score=30.67 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=23.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
||-++||||. ++||+-+ .+.|-++|++|.++
T Consensus 1 mk~vlItGas-g~iG~~l-----a~~l~~~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRAT-----ALLFAAEGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHHH-----HHHHHHCCCeEEEE
Confidence 7889999987 6777654 45566789998876
No 424
>PRK08278 short chain dehydrogenase; Provisional
Probab=27.92 E-value=62 Score=32.23 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++|||| -+|||+.+ .+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~i-----a~~l~~~G~~V~~~ 36 (273)
T PRK08278 7 KTLFITGA-SRGIGLAI-----ALRAARDGANIVIA 36 (273)
T ss_pred CEEEEECC-CchHHHHH-----HHHHHHCCCEEEEE
Confidence 67999999 46777654 55667789887764
No 425
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=27.87 E-value=3.2e+02 Score=28.06 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECC-CCCCCchhHHHHHHHHHHHc
Q 009814 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPG-GFGNRGVQGKILAAKYAREH 390 (524)
Q Consensus 314 ~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpG-GfG~rg~eg~i~air~are~ 390 (524)
..+.+.-+..+.++.+.-++.--.+..+...+ .+. .+++. ...+|||+++| ..|.+-...++..+|.+..
T Consensus 128 ~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~----~~~--~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~- 200 (254)
T PF03437_consen 128 GELLRYRKRLGADVKILADVHVKHSSPLATRD----LEE--AAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP- 200 (254)
T ss_pred HHHHHHHHHcCCCeEEEeeechhhcccCCCCC----HHH--HHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-
Confidence 34555555566666665555433333332211 111 12222 34699999999 4566654455666666654
Q ss_pred CCCEE
Q 009814 391 RIPYL 395 (524)
Q Consensus 391 ~iP~L 395 (524)
+|+|
T Consensus 201 -~PVl 204 (254)
T PF03437_consen 201 -VPVL 204 (254)
T ss_pred -CCEE
Confidence 8987
No 426
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.84 E-value=70 Score=31.14 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|.++|||| -+|||+.+ .+.|.++|.+|.+.=
T Consensus 2 k~~lItG~-s~giG~~i-----a~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGG-SSGMGKAM-----AKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCC-CChHHHHH-----HHHHHHCCCEEEEEe
Confidence 77999999 67777654 556667899887653
No 427
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.74 E-value=1.9e+02 Score=31.70 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCC----------ChhhhhHHHHhccC
Q 009814 293 GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----------NPDAYKAAWKLLKG 362 (524)
Q Consensus 293 ~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~----------~p~~y~~~~~~l~~ 362 (524)
+.....+|+++| ++..+ .+..+.|.. |+.+.+. |........... .+ +.+.+
T Consensus 2 ~~~~~~~v~v~G-~G~sG---~a~~~~L~~-g~~v~v~------D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 63 (454)
T PRK01368 2 NSHTKQKIGVFG-LGKTG---ISVYEELQN-KYDVIVY------DDLKANRDIFEELYSKNAIAALSD-------SRWQN 63 (454)
T ss_pred cCCCCCEEEEEe-ecHHH---HHHHHHHhC-CCEEEEE------CCCCCchHHHHhhhcCceeccCCh-------hHhhC
Q ss_pred CCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 009814 363 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 363 ~DGIllpGGfG~rg~eg~i~air~are~~iP~LG 396 (524)
+|-||++.|..... ..+++|+++++|+++
T Consensus 64 ~d~vV~SPgI~~~~-----p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 64 LDKIVLSPGIPLTH-----EIVKIAKNFNIPITS 92 (454)
T ss_pred CCEEEECCCCCCCC-----HHHHHHHHCCCceec
No 428
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=27.73 E-value=65 Score=31.54 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++|||| -+|||+ ++.+.|.+.|++|...
T Consensus 11 k~~lItG~-~~gIG~-----a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 11 KVAVVTGC-DTGLGQ-----GMALGLAEAGCDIVGI 40 (253)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEEe
Confidence 78999998 466765 5566777889988653
No 429
>PRK06125 short chain dehydrogenase; Provisional
Probab=27.72 E-value=69 Score=31.35 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
|.++|||| -+|||+.++. .|.++|++|.+.=.
T Consensus 8 k~vlItG~-~~giG~~ia~-----~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGA-SKGIGAAAAE-----AFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCC-CchHHHHHHH-----HHHHcCCEEEEEeC
Confidence 78999998 5888887654 45567888877533
No 430
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=27.70 E-value=3.1e+02 Score=29.52 Aligned_cols=104 Identities=30% Similarity=0.186 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHH
Q 009814 277 KEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 356 (524)
Q Consensus 277 ~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~ 356 (524)
+.++++-|+...+.+.......+|.+- |-+---.+-.||.+-|.|..- +++.++.. ++|.|.+.. |
T Consensus 99 ~aadlky~es~ar~ia~~s~~~kivve-kstvpv~aaesi~~il~~n~~--~i~fqils-npeflaegt----------a 164 (481)
T KOG2666|consen 99 KAADLKYWESAARMIADVSVSDKIVVE-KSTVPVKAAESIEKILNHNSK--GIKFQILS-NPEFLAEGT----------A 164 (481)
T ss_pred cccchhHHHHHHHHHHHhccCCeEEEe-eccccchHHHHHHHHHhcCCC--CceeEecc-ChHHhcccc----------h
Confidence 345788898766665443344567665 443222256677777865532 23333322 333343322 3
Q ss_pred HHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEE
Q 009814 357 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (524)
Q Consensus 357 ~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~L 395 (524)
..+|.++|.+++.| -..|.-...+++++..-++=+|-=
T Consensus 165 ikdl~npdrvligg-~etpeg~~av~~l~~vyehwvp~~ 202 (481)
T KOG2666|consen 165 IKDLFNPDRVLIGG-RETPEGFQAVQALKDVYEHWVPRE 202 (481)
T ss_pred hhhhcCCceEEECC-CCChhHHHHHHHHHHHHHhhCccc
Confidence 46789999999876 333422234566666666666653
No 431
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.61 E-value=1.2e+02 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=29.9
Q ss_pred EEEEEeCCccCCcchHHH-HHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVT-ASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~-~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|.++||| ||+|-... +..+=.+|+++|+.+.+...+.+
T Consensus 4 kILvvCg---sG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACG---GAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred eEEEECC---CchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 4678888 57777776 67788999999999988886654
No 432
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=27.34 E-value=1.1e+02 Score=29.34 Aligned_cols=104 Identities=19% Similarity=0.107 Sum_probs=61.7
Q ss_pred hcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHhhhhcCCCCEEEEEee
Q 009814 102 RKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181 (524)
Q Consensus 102 r~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ea~rq~~~~~~~~n~~~ih~~ 181 (524)
=+|.|-|...++=..+.+++.++|++..+ ..+.=+++-.+||-=|===+...+|.+|+ ++.. + +-..
T Consensus 53 ~~G~~~~~~~~~g~~~~~~~~~~ir~~le------~~d~~~i~~slgGGTGsG~~~~i~~~~~~----~~~~-~--~~~~ 119 (192)
T smart00864 53 TRGLGAGADPEVGREAAEESLDEIREELE------GADGVFITAGMGGGTGTGAAPVIAEIAKE----YGIL-T--VAVV 119 (192)
T ss_pred cccCCCCCChHHHHHHHHHHHHHHHHHhc------CCCEEEEeccCCCCccccHHHHHHHHHHH----cCCc-E--EEEE
Confidence 36889999988888999999999998873 22222455678875454344455676664 3422 2 4445
Q ss_pred eeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCC
Q 009814 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVAL 222 (524)
Q Consensus 182 ~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l 222 (524)
..|.. .|-.++| +.++..|+.+.=..|.+++=+-..+
T Consensus 120 v~P~~---~e~~~~~-~Na~~~l~~l~~~~d~~i~~dN~~l 156 (192)
T smart00864 120 TKPFV---FEGVVRP-YNAELGLEELREHVDSLIVIDNDAL 156 (192)
T ss_pred EEeEe---ecchhHH-HHHHHHHHHHHHhCCEEEEEEhHHH
Confidence 56733 3333322 3444444444345787777655444
No 433
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=27.28 E-value=68 Score=31.48 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|-++|||| -||||+. +.+.|.++|++|.+.-
T Consensus 7 k~vlVtGa-s~gIG~~-----ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGG-GSGIGRA-----LVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEEe
Confidence 67999998 4677754 4566677899987754
No 434
>PRK12743 oxidoreductase; Provisional
Probab=27.27 E-value=72 Score=31.22 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=21.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
+|-++|||| -|+||.. +.+.|-++|++|.+
T Consensus 2 ~k~vlItGa-s~giG~~-----~a~~l~~~G~~V~~ 31 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKA-----CALLLAQQGFDIGI 31 (256)
T ss_pred CCEEEEECC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 467999998 4888854 55666667887654
No 435
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.98 E-value=2.4e+02 Score=31.28 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCC----------CccccccCCChhhhhHHHHhccCCCEEEE
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC----------DLEDATEKENPDAYKAAWKLLKGADGILV 368 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~----------~le~~~~~~~p~~y~~~~~~l~~~DGIll 368 (524)
+|+++| ++..+ .+..+.|...|+.+.+. +.. .+.-......+ +.+.++|-||.
T Consensus 14 ~v~V~G-~G~sG---~aa~~~L~~~G~~v~~~------D~~~~~~~~l~~~g~~~~~~~~~~-------~~l~~~D~VV~ 76 (488)
T PRK03369 14 PVLVAG-AGVTG---RAVLAALTRFGARPTVC------DDDPDALRPHAERGVATVSTSDAV-------QQIADYALVVT 76 (488)
T ss_pred eEEEEc-CCHHH---HHHHHHHHHCCCEEEEE------cCCHHHHHHHHhCCCEEEcCcchH-------hHhhcCCEEEE
Q ss_pred CCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 009814 369 PGGFGNRGVQGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 369 pGGfG~rg~eg~i~air~are~~iP~LG 396 (524)
+.|..... ..++.|+++++|++|
T Consensus 77 SpGi~~~~-----p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 77 SPGFRPTA-----PVLAAAAAAGVPIWG 99 (488)
T ss_pred CCCCCCCC-----HHHHHHHHCCCcEee
No 436
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=26.95 E-value=3.6e+02 Score=25.76 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=21.7
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEh
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGIC 398 (524)
..+|||++.++... . ...++.++++++|++-+.
T Consensus 54 ~~vdgiii~~~~~~-~----~~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 54 QRVDGLILTVADAA-T----SPALDLLDAERVPYVLAY 86 (266)
T ss_pred cCCCEEEEecCCCC-c----hHHHHHHhhCCCCEEEEe
Confidence 47999998654321 1 135677788899986663
No 437
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=26.82 E-value=5e+02 Score=26.72 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=44.6
Q ss_pred eEE-EEEeccCCCc----chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECC
Q 009814 298 VRI-AMVGKYTGLS----DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPG 370 (524)
Q Consensus 298 v~I-aiVGkY~~~~----day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpG 370 (524)
+++ .++|-|.... ..-..+.+.-+..+.++.+.-++.--.+..+...++ -..+++. ...+|||+++|
T Consensus 106 IRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~------~e~a~~~~~~~~aDavivtG 179 (257)
T TIGR00259 106 IRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDL------ESIALDTVERGLADAVILSG 179 (257)
T ss_pred EEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCH------HHHHHHHHHhcCCCEEEECc
Confidence 555 5666554322 223344444444455565554554433322211111 1112222 23489999999
Q ss_pred -CCCCCchhHHHHHHHHHHHcCCCEE
Q 009814 371 -GFGNRGVQGKILAAKYAREHRIPYL 395 (524)
Q Consensus 371 -GfG~rg~eg~i~air~are~~iP~L 395 (524)
|.|.+-.-..+..+|.+. ..+|+|
T Consensus 180 ~~TG~~~d~~~l~~vr~~~-~~~Pvl 204 (257)
T TIGR00259 180 KTTGTEVDLELLKLAKETV-KDTPVL 204 (257)
T ss_pred CCCCCCCCHHHHHHHHhcc-CCCeEE
Confidence 778774444455555432 257875
No 438
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=26.80 E-value=87 Score=31.17 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.5
Q ss_pred EEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 4 VLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 4 i~vtgg----------v~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|+||+| .+|.-.-|-+.++|...|.++|++|+.+-
T Consensus 3 vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 3 ILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred EEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 678888 67888889999999999999999999873
No 439
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=26.64 E-value=4.6e+02 Score=25.28 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=21.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.+.. .+ .....++.+.+.++|+.-+
T Consensus 55 ~~vdgiii~~~~-~~---~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 55 QGVDAIIVVPVD-TA---ATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred cCCCEEEEecCc-hh---hhHHHHHHHHHCCCeEEEe
Confidence 479999986532 11 1124566777888998654
No 440
>PRK06057 short chain dehydrogenase; Provisional
Probab=26.63 E-value=73 Score=31.09 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-|+||||- ++||+-+ .+.|.++|++|.++
T Consensus 8 ~~vlItGas-ggIG~~~-----a~~l~~~G~~v~~~ 37 (255)
T PRK06057 8 RVAVITGGG-SGIGLAT-----ARRLAAEGATVVVG 37 (255)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHcCCEEEEE
Confidence 678999994 6666544 46677789998875
No 441
>PRK07413 hypothetical protein; Validated
Probab=26.61 E-value=56 Score=35.46 Aligned_cols=30 Identities=40% Similarity=0.756 Sum_probs=0.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCC--------eeEEeee
Q 009814 10 VVSGLGKGVTASSIGVLLKACGL--------RVTCIKI 39 (524)
Q Consensus 10 v~s~lgkgi~~~s~g~ll~~~g~--------~v~~~k~ 39 (524)
|.-|=|||-|+|++|..|++.|. ||.++.|
T Consensus 24 VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQF 61 (382)
T PRK07413 24 VYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRF 61 (382)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEE
No 442
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=26.59 E-value=54 Score=33.99 Aligned_cols=21 Identities=48% Similarity=0.789 Sum_probs=18.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHH
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSI 23 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~ 23 (524)
|+.|+||| +||-||.++.-|+
T Consensus 1 m~lvIVTG--lSGAGKsvAl~~l 21 (286)
T COG1660 1 MRLVIVTG--LSGAGKSVALRVL 21 (286)
T ss_pred CcEEEEec--CCCCcHHHHHHHH
Confidence 67899999 8999999987664
No 443
>PRK08643 acetoin reductase; Validated
Probab=26.55 E-value=83 Score=30.58 Aligned_cols=30 Identities=37% Similarity=0.522 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- |+||. ++.+.|-++|++|.++
T Consensus 3 k~~lItGas-~giG~-----~la~~l~~~G~~v~~~ 32 (256)
T PRK08643 3 KVALVTGAG-QGIGF-----AIAKRLVEDGFKVAIV 32 (256)
T ss_pred CEEEEECCC-ChHHH-----HHHHHHHHCCCEEEEE
Confidence 678999876 77775 5566677789988765
No 444
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=26.47 E-value=73 Score=33.23 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=22.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v 34 (524)
|+.|+||| +||=||-.+. +.|+..||-+
T Consensus 1 m~~vIiTG--lSGaGKs~Al----~~lED~Gy~c 28 (284)
T PF03668_consen 1 MELVIITG--LSGAGKSTAL----RALEDLGYYC 28 (284)
T ss_pred CeEEEEeC--CCcCCHHHHH----HHHHhcCeeE
Confidence 78999999 8999996554 5678888765
No 445
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=26.40 E-value=1.5e+02 Score=30.77 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=36.4
Q ss_pred hccCCCEEEECCCCCC-Cc-hhHHHHHHHHHHHcCCCEE----EEhHhHHHHH
Q 009814 359 LLKGADGILVPGGFGN-RG-VQGKILAAKYAREHRIPYL----GICLGMQVAV 405 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~-rg-~eg~i~air~are~~iP~L----GICLGmQll~ 405 (524)
.|...++|++..|-|- |+ ++-+-+.++|++++++|+- |+-|=-|...
T Consensus 98 ~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e 150 (306)
T KOG3974|consen 98 LLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPE 150 (306)
T ss_pred HHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchh
Confidence 4778899999888885 33 3556678899999999997 7777667666
No 446
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=26.34 E-value=69 Score=32.76 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- +|||.-+ .+.|..+|++|.+.
T Consensus 7 k~vlVTGas-~gIG~~~-----a~~L~~~G~~V~~~ 36 (322)
T PRK07453 7 GTVIITGAS-SGVGLYA-----AKALAKRGWHVIMA 36 (322)
T ss_pred CEEEEEcCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 679999995 7887654 45566678887654
No 447
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=26.27 E-value=90 Score=29.88 Aligned_cols=30 Identities=40% Similarity=0.677 Sum_probs=22.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
||.++|||| -++||.. +.+.|-++|++|.+
T Consensus 1 ~~~~lItGa-~g~iG~~-----l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRA-----TALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 788999999 4667665 45566678988865
No 448
>PLN02778 3,5-epimerase/4-reductase
Probab=26.25 E-value=85 Score=32.11 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
=|+|||| -|-+-+.|-+.|.++|++|+.
T Consensus 11 kiLVtG~------tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 11 KFLIYGK------TGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred eEEEECC------CCHHHHHHHHHHHhCCCEEEE
Confidence 3899996 589999999999999999874
No 449
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.22 E-value=2.4e+02 Score=27.20 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=25.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
.++|||++.....+ .....++.+.+.++|+.-+=..
T Consensus 54 ~~~d~Iiv~~~~~~----~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPD----SLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTT----TTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHH----HHHHHHHHHhhcCceEEEEecc
Confidence 57999988764322 2236778888999999886333
No 450
>PRK07478 short chain dehydrogenase; Provisional
Probab=26.11 E-value=75 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- +|||+.++ +.|-++|++|.+.
T Consensus 7 k~~lItGas-~giG~~ia-----~~l~~~G~~v~~~ 36 (254)
T PRK07478 7 KVAIITGAS-SGIGRAAA-----KLFAREGAKVVVG 36 (254)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 689999986 78887654 4566789887654
No 451
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=26.05 E-value=95 Score=33.12 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=33.6
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (524)
+++|| ++|-||=..+..+...|. .+|++|..+-+|=++.
T Consensus 2 ~~l~G--l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCG--LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEEC--CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 45666 689999999999998886 7999999999998874
No 452
>PRK07023 short chain dehydrogenase; Provisional
Probab=25.99 E-value=91 Score=30.10 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=22.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|+-|+|||| -+|||+- +.+.|.++|++|.++=
T Consensus 1 ~~~vlItGa-sggiG~~-----ia~~l~~~G~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGH-SRGLGAA-----LAEQLLQPGIAVLGVA 32 (243)
T ss_pred CceEEEecC-CcchHHH-----HHHHHHhCCCEEEEEe
Confidence 456899998 5677654 4456667899987763
No 453
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=25.96 E-value=3e+02 Score=30.42 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=39.8
Q ss_pred CcEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCC--chhhHHHhhcCCCcccEEE
Q 009814 140 VDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKP--TQHSVRGLRGQGLTPNILA 215 (524)
Q Consensus 140 ~d~~i~e-iggtvgdie-s~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkp--tq~sv~~lrs~Gi~pd~lv 215 (524)
.=-+|+| |-|.-|.+. +--|++++|++..+.| +++|. .|..|== |= ..-..+..|+.||+++
T Consensus 232 iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g---iLlI~----------DEV~tGfGRtG-~~~a~e~~gv~PDiv~ 297 (464)
T PRK06938 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG---IPLIV----------DEIQSGFGRTG-KMFAFEHAGIIPDVVV 297 (464)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC---CEEEE----------eccccCCCcCc-HHHHHHhcCCCCCEEE
Confidence 4457888 444445543 5789999999999976 66662 3443310 11 1122345799999988
Q ss_pred E
Q 009814 216 C 216 (524)
Q Consensus 216 ~ 216 (524)
+
T Consensus 298 ~ 298 (464)
T PRK06938 298 L 298 (464)
T ss_pred e
Confidence 7
No 454
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.82 E-value=95 Score=29.49 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
+|.|+|||| -+++ .+++...|.++|++|.+
T Consensus 6 ~~~vlItGa-sg~i-----G~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 6 GRVALVTGA-ARGL-----GRAIALRLARAGADVVV 35 (249)
T ss_pred CCEEEEeCC-CchH-----HHHHHHHHHHCCCeEEE
Confidence 478999998 3444 45666777889998755
No 455
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=25.77 E-value=2.9e+02 Score=29.36 Aligned_cols=113 Identities=21% Similarity=0.233 Sum_probs=65.5
Q ss_pred cccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcC
Q 009814 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN 271 (524)
Q Consensus 192 ~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~ 271 (524)
.|=---.-+++.|.+.| +|++|+|-...-... .+|-+..+. .||+.-|=..- +=+ |
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~egaa~---~~a~~~~~~--pvINaGDG~~q-HPT-----Q----------- 141 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEGAAR---LLAEFSGVN--PVINAGDGSHQ-HPT-----Q----------- 141 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCccccHHH---HHHHhcCCC--ceEECCCCCCC-Ccc-----H-----------
Confidence 44445677889998888 999999977644333 334444443 37776554332 111 1
Q ss_pred CCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeC
Q 009814 272 LQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPA 338 (524)
Q Consensus 272 l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s 338 (524)
..|+-| .+.+.... -+..+||++||-. ....-.|..++|...|+++.+.-.-.|.++
T Consensus 142 -------~LLDl~-TI~~~~G~-~~gl~iaivGDlk-hsRva~S~~~~L~~~ga~v~lvsP~~L~~p 198 (316)
T COG0540 142 -------ALLDLY-TIREEFGR-LDGLKIAIVGDLK-HSRVAHSNIQALKRFGAEVYLVSPETLLPP 198 (316)
T ss_pred -------HHHHHH-HHHHHhCC-cCCcEEEEEcccc-chHHHHHHHHHHHHcCCEEEEECchHhCCc
Confidence 111111 11111111 2347999999764 334667889999999977776644445443
No 456
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.75 E-value=1.3e+02 Score=32.99 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=46.2
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccc-c---ccCCC---hhhhhHHHHhccCCCEEEECCC
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED-A---TEKEN---PDAYKAAWKLLKGADGILVPGG 371 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~-~---~~~~~---p~~y~~~~~~l~~~DGIllpGG 371 (524)
+|+++| ++. +=.+..+.|...|+.+.+. +...... . .+... ....|. .+.+.++|-||+|.|
T Consensus 10 ~v~v~G-~G~---sG~~~~~~l~~~g~~v~~~------d~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~d~vV~Spg 78 (468)
T PRK04690 10 RVALWG-WGR---EGRAAYRALRAHLPAQALT------LFCNAVEAREVGALADAALLVETEAS-AQRLAAFDVVVKSPG 78 (468)
T ss_pred EEEEEc-cch---hhHHHHHHHHHcCCEEEEE------cCCCcccchHHHHHhhcCEEEeCCCC-hHHccCCCEEEECCC
Confidence 689998 653 4478889999999887664 3221100 0 00000 000011 123557888888877
Q ss_pred CCCCchhHHHHHHHHHHHcCCCEEE
Q 009814 372 FGNRGVQGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 372 fG~rg~eg~i~air~are~~iP~LG 396 (524)
.... ...++.|++.++|+.+
T Consensus 79 I~~~-----~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 79 ISPY-----RPEALAAAARGTPFIG 98 (468)
T ss_pred CCCC-----CHHHHHHHHcCCcEEE
Confidence 5432 2346667777777776
No 457
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=25.71 E-value=85 Score=34.06 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=29.8
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtgg----------v~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|-++|||| .+|--.-|-....|.+-|..+|.+|+.+-
T Consensus 186 ~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 186 KRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred ceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 67899999 45555667777889999999999998763
No 458
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.40 E-value=3.4e+02 Score=25.44 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=20.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++++.... .. ..++.+.++++|++.+
T Consensus 54 ~~~d~ii~~~~~~~-~~----~~~~~l~~~~ip~v~~ 85 (264)
T cd01537 54 RGVDGIIIAPSDLT-AP----TIVKLARKAGIPVVLV 85 (264)
T ss_pred cCCCEEEEecCCCc-ch----hHHHHhhhcCCCEEEe
Confidence 47899988763321 11 1466667778888765
No 459
>PRK06128 oxidoreductase; Provisional
Probab=25.38 E-value=88 Score=31.66 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++|||| -+|||+. +.+.|-++|++|.+.
T Consensus 56 k~vlITGa-s~gIG~~-----~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 56 RKALITGA-DSGIGRA-----TAIAFAREGADIALN 85 (300)
T ss_pred CEEEEecC-CCcHHHH-----HHHHHHHcCCEEEEE
Confidence 77999998 5788865 445677789988654
No 460
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.32 E-value=83 Score=31.19 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv-~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|-++||||- -+|||+.++ +.|-+.|++|.+
T Consensus 7 k~vlItGas~~~GIG~a~a-----~~l~~~G~~v~~ 37 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIA-----KACKREGAELAF 37 (260)
T ss_pred cEEEEeCCCCCCcHHHHHH-----HHHHHCCCeEEE
Confidence 679999984 689998554 556678988854
No 461
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=25.28 E-value=84 Score=30.61 Aligned_cols=30 Identities=40% Similarity=0.689 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- +|||+- +.+.|.++|++|.+.
T Consensus 9 k~vlVtGas-~gIG~~-----la~~l~~~G~~v~~~ 38 (260)
T PRK12823 9 KVVVVTGAA-QGIGRG-----VALRAAAEGARVVLV 38 (260)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 677754 556677889988764
No 462
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=25.27 E-value=1.5e+02 Score=29.02 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=35.0
Q ss_pred chHhhHHHHhhhhcCCCCCC--eeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc
Q 009814 90 TGKIYQSVIDKERKGDYLGK--TVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI 151 (524)
Q Consensus 90 ~g~iy~~vi~ker~g~ylg~--tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtv 151 (524)
+|..-.+.+++ .| +.|- ...+||.=-++|++.|+++.. ..++|++|+= |||-
T Consensus 24 ng~~L~~~L~~--~G-~~g~~v~~~iVpDd~~~I~~aL~~a~~------~~~~DlIITT-GGtg 77 (193)
T PRK09417 24 GIPALEEWLAS--AL-TSPFEIETRLIPDEQDLIEQTLIELVD------EMGCDLVLTT-GGTG 77 (193)
T ss_pred hHHHHHHHHHH--cC-CCCceEEEEECCCCHHHHHHHHHHHhh------cCCCCEEEEC-CCCC
Confidence 45555555543 23 2232 227899999999999998862 3578998886 9884
No 463
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=25.06 E-value=1.1e+02 Score=35.15 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=33.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
||.|=|+|- |+-||=....-|=..|+.+||+|..||=|.
T Consensus 10 ~~vi~ivG~--s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAY--SGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcC--CCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 355667774 999999999999999999999999999755
No 464
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=25.03 E-value=1.1e+02 Score=31.72 Aligned_cols=92 Identities=28% Similarity=0.357 Sum_probs=62.3
Q ss_pred CccccCCCCccccccCCCCCCCCcccchHh--hHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhccc-C----CCC
Q 009814 64 GGEVDLDLGNYERFMDIKLTRDNNITTGKI--YQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIP-V----DGK 136 (524)
Q Consensus 64 g~e~dldlg~yerf~~~~~~~~~n~t~g~i--y~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~-~----d~~ 136 (524)
|.+++| |.--|.|=|.-+++|..+++|+. -.+.=..+|+|+ +.++|+|.++.+- | + ++.
T Consensus 51 gv~V~l-l~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE------------~~~~~~~~~~lgi-~i~~~~~~~~ 116 (267)
T COG1834 51 GVEVHL-LPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGE------------EEAIKETLESLGI-PIYPRVEAGV 116 (267)
T ss_pred CCEEEE-cCcccCCCcceEeccceeEecccEEEeccCChhhccC------------HHHHHHHHHHcCC-cccccccCCC
Confidence 444444 44567788888888988888864 345557899998 6789999999873 4 2 233
Q ss_pred CCC-CcEEEEeeCccc--cccCcchHHHHHHHhhhhcC
Q 009814 137 EGP-VDVCVIELGGTI--GDIESMPFIEALGQFSYRVG 171 (524)
Q Consensus 137 ~~~-~d~~i~eiggtv--gdies~pf~ea~rq~~~~~~ 171 (524)
.++ =|+++.+ |.|| |.= .--=+|+++||+.-++
T Consensus 117 ~eG~GD~l~~~-~~~v~iG~s-~RTn~egi~~l~~~L~ 152 (267)
T COG1834 117 FEGAGDVLMDG-GDTVYIGYS-FRTNLEGIEQLQAWLE 152 (267)
T ss_pred ccccccEEEeC-CcEEEEEec-cccchHHHHHHHHHhc
Confidence 333 5888887 7776 221 1223588889988776
No 465
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=24.91 E-value=76 Score=32.59 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCC-CeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACG-LRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g-~~v~~ 36 (524)
|-++||||- ||||+.++ +.|-++| ++|.+
T Consensus 4 k~vlITGas-~GIG~aia-----~~L~~~G~~~V~l 33 (314)
T TIGR01289 4 PTVIITGAS-SGLGLYAA-----KALAATGEWHVIM 33 (314)
T ss_pred CEEEEECCC-ChHHHHHH-----HHHHHcCCCEEEE
Confidence 678999987 78887654 4455678 87754
No 466
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.85 E-value=3e+02 Score=25.09 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=27.2
Q ss_pred HhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
+.+.++|.|+..-|+...........++.+.+.+++-+=+
T Consensus 56 ~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 56 AALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp HHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEE
T ss_pred hhhhhcchhhhhhhhhccccccccccccccccccccccee
Confidence 4577999999998776654445555566666667766554
No 467
>PLN02686 cinnamoyl-CoA reductase
Probab=24.81 E-value=1e+02 Score=32.51 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=24.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
+|-|+||||- |-+.+.+-+.|..+|++|.+.
T Consensus 53 ~k~VLVTGat------GfIG~~lv~~L~~~G~~V~~~ 83 (367)
T PLN02686 53 ARLVCVTGGV------SFLGLAIVDRLLRHGYSVRIA 83 (367)
T ss_pred CCEEEEECCc------hHHHHHHHHHHHHCCCEEEEE
Confidence 4779999986 566777778888889988754
No 468
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=24.76 E-value=1.5e+02 Score=27.28 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=28.5
Q ss_pred CCCcEEEEeeCccccccCc-----chHHHHHHHhhhhcCCCCEEEEEeeeee
Q 009814 138 GPVDVCVIELGGTIGDIES-----MPFIEALGQFSYRVGPGNFCLIHVSLVP 184 (524)
Q Consensus 138 ~~~d~~i~eiggtvgdies-----~pf~ea~rq~~~~~~~~n~~~ih~~~vp 184 (524)
.+||+|||++|+ .|+.. .-|.+.+++|-.++...++-.|-++.-|
T Consensus 66 ~~~d~vii~~G~--ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~ 115 (185)
T cd01832 66 LRPDLVTLLAGG--NDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPD 115 (185)
T ss_pred cCCCEEEEeccc--cccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 489999999995 45532 1256777777776654444444455444
No 469
>PRK02496 adk adenylate kinase; Provisional
Probab=24.76 E-value=85 Score=29.40 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll 27 (524)
|+-|+|+|+ +|-||+..|.-|...+
T Consensus 1 ~~~i~i~G~--pGsGKst~a~~la~~~ 25 (184)
T PRK02496 1 MTRLIFLGP--PGAGKGTQAVVLAEHL 25 (184)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHh
Confidence 566899998 8999988888877644
No 470
>PRK07062 short chain dehydrogenase; Provisional
Probab=24.71 E-value=84 Score=30.77 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=24.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|.++||||- ||||+- +.+.|.++|++|.+.-.+
T Consensus 9 k~~lItGas-~giG~~-----ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGS-SGIGLA-----TVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCeEEEEeCC
Confidence 679999985 677764 556667889998776444
No 471
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=24.64 E-value=45 Score=18.58 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=6.7
Q ss_pred EEccCCccc
Q 009814 59 FVLDDGGEV 67 (524)
Q Consensus 59 fv~~dg~e~ 67 (524)
|.+.|||+|
T Consensus 1 ~~S~D~G~T 9 (12)
T PF02012_consen 1 YYSTDGGKT 9 (12)
T ss_dssp EEESSTTSS
T ss_pred CEeCCCccc
Confidence 567788876
No 472
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.58 E-value=89 Score=30.91 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~-s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||-- +|||+.++ +.|-.+|.+|.+.
T Consensus 8 k~~lItGa~~s~GIG~aia-----~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIA-----RSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHH-----HHHHHCCCEEEEe
Confidence 6799999985 89997664 4556689887543
No 473
>PRK06217 hypothetical protein; Validated
Probab=24.52 E-value=76 Score=29.91 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll 27 (524)
|+-|+|+| .||=||...|..|+..|
T Consensus 1 ~~~I~i~G--~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITG--ASGSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHc
Confidence 56699999 68999999998888765
No 474
>PRK12747 short chain dehydrogenase; Provisional
Probab=24.48 E-value=87 Score=30.42 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=21.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|-++||||- ||||.. +.+.|.+.|++|.+
T Consensus 5 k~~lItGas-~gIG~~-----ia~~l~~~G~~v~~ 33 (252)
T PRK12747 5 KVALVTGAS-RGIGRA-----IAKRLANDGALVAI 33 (252)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCeEEE
Confidence 789999975 677754 45567788988755
No 475
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=24.47 E-value=1.4e+02 Score=26.15 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
++|+|. +|.||-..+..+...+...|.+|..+-.+...
T Consensus 2 ~~i~G~--~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGP--TGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 567887 89999999999999998888888666555443
No 476
>CHL00067 rps2 ribosomal protein S2
Probab=24.33 E-value=78 Score=31.80 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEh
Q 009814 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 362 ~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGIC 398 (524)
.||.||+.+-- ....|+++|+..+||+.|||
T Consensus 161 ~P~~iiv~d~~------~~~~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 161 LPDIVIIIDQQ------EEYTALRECRKLGIPTISIL 191 (230)
T ss_pred CCCEEEEeCCc------ccHHHHHHHHHcCCCEEEEE
Confidence 58888888732 23479999999999999997
No 477
>PRK06196 oxidoreductase; Provisional
Probab=24.28 E-value=81 Score=32.18 Aligned_cols=31 Identities=42% Similarity=0.514 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|-|+||||- +|||+-++ +.|.++|++|.+.=
T Consensus 27 k~vlITGas-ggIG~~~a-----~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 27 KTAIVTGGY-SGLGLETT-----RALAQAGAHVIVPA 57 (315)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEEe
Confidence 679999986 78887554 45667899887753
No 478
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=24.27 E-value=1e+02 Score=29.68 Aligned_cols=39 Identities=31% Similarity=0.334 Sum_probs=30.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
..|.++| .||-||-..+..|..+|+. .++..+-.|.|+.
T Consensus 7 ~vi~I~G--~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~ 45 (207)
T TIGR00235 7 IIIGIGG--GSGSGKTTVARKIYEQLGK--LEIVIISQDNYYK 45 (207)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHhcc--cCCeEeccccccc
Confidence 4677888 6999999999999998875 4566777777753
No 479
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.26 E-value=80 Score=32.69 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=25.9
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv-~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++|||+- =||||+++ .+.|.++|++|-+-
T Consensus 9 k~alITGa~~~~GIG~a~-----A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 9 KIAFIAGIGDDQGYGWGI-----AKALAEAGATILVG 40 (299)
T ss_pred CEEEEeCCCCCCCHHHHH-----HHHHHHCCCEEEEE
Confidence 679999997 59999876 47889999999763
No 480
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=24.22 E-value=80 Score=30.85 Aligned_cols=30 Identities=40% Similarity=0.666 Sum_probs=21.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++|||| -+|||+.+ .+.|-..|++|.+.
T Consensus 16 k~vlItGa-s~gIG~~i-----a~~l~~~G~~v~~~ 45 (258)
T PRK06935 16 KVAIVTGG-NTGLGQGY-----AVALAKAGADIIIT 45 (258)
T ss_pred CEEEEeCC-CchHHHHH-----HHHHHHCCCEEEEE
Confidence 67899998 46777654 45566789887664
No 481
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=24.17 E-value=98 Score=33.81 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=25.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|+|||| -|-+.+.|-..|.++|++|..+-
T Consensus 123 ILVTGa------tGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 123 IVVTGG------AGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred EEEECC------ccHHHHHHHHHHHHCCCEEEEEe
Confidence 899996 48999999999999999998864
No 482
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.07 E-value=96 Score=29.64 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
|-++|||| -++||+-++ +.|.++|++|...-.
T Consensus 6 k~~lVtGa-s~~iG~~ia-----~~l~~~G~~v~~~~r 37 (235)
T PRK06550 6 KTVLITGA-ASGIGLAQA-----RAFLAQGAQVYGVDK 37 (235)
T ss_pred CEEEEcCC-CchHHHHHH-----HHHHHCCCEEEEEeC
Confidence 67899988 467776554 566778999887643
No 483
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=23.97 E-value=95 Score=32.00 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
|-|+||||- |-+.+.|...|.++|++|..+-.
T Consensus 1 ~~vlVTGat------GfIG~~l~~~L~~~G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGIT------GQDGSYLAEFLLEKGYEVHGLIR 32 (343)
T ss_pred CeEEEEcCC------CcHHHHHHHHHHHCCCEEEEEec
Confidence 568999985 56667777888888999887643
No 484
>PRK08862 short chain dehydrogenase; Provisional
Probab=23.73 E-value=89 Score=30.51 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 6 k~~lVtGas-~GIG~ai-----a~~la~~G~~V~~~ 35 (227)
T PRK08862 6 SIILITSAG-SVLGRTI-----SCHFARLGATLILC 35 (227)
T ss_pred eEEEEECCc-cHHHHHH-----HHHHHHCCCEEEEE
Confidence 789999986 5888764 45677889988654
No 485
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=23.67 E-value=1e+02 Score=29.58 Aligned_cols=32 Identities=41% Similarity=0.528 Sum_probs=23.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
+|-++||||- ++|| +++.+.|-++|++|.+.=
T Consensus 1 ~~~vlItGa~-g~lG-----~~l~~~l~~~g~~v~~~~ 32 (255)
T TIGR01963 1 GKTALVTGAA-SGIG-----LAIALALAAAGANVVVND 32 (255)
T ss_pred CCEEEEcCCc-chHH-----HHHHHHHHHCCCEEEEEe
Confidence 4679999975 5555 566677777898877653
No 486
>COG2403 Predicted GTPase [General function prediction only]
Probab=23.62 E-value=78 Score=34.49 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.5
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 9 gv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
|+=-|.||--+++-++++|++|||+|.++..
T Consensus 133 atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 133 ATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred EeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 3556889999999999999999999999976
No 487
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.61 E-value=96 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.5
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~-s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||-- +|||+.+ .+.|-+.|++|.+.
T Consensus 6 k~~lItGas~~~GIG~ai-----A~~la~~G~~Vil~ 37 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGI-----AKACFEQGAELAFT 37 (274)
T ss_pred cEEEEECCCCCCCHHHHH-----HHHHHHCCCEEEEE
Confidence 7899999975 7888654 45666789887653
No 488
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=23.55 E-value=1.1e+02 Score=30.32 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=28.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|+++| ++|-||-..|..|+..|...|++|..+-.|
T Consensus 2 Ivl~G--~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTG--LPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEc--CCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 67788 578899999999999999988888666333
No 489
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=23.55 E-value=4.1e+02 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 009814 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (524)
Q Consensus 361 ~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGI 397 (524)
.++|||++.+.... -..++.+.+.++|+..+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 54 RRPAGLILTGLEHT------ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhcCCCEEEE
Confidence 47999988763321 13455566678898865
No 490
>PRK08589 short chain dehydrogenase; Validated
Probab=23.53 E-value=87 Score=31.10 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- +|||+. +.+-|.++|++|.+.
T Consensus 7 k~vlItGas-~gIG~a-----ia~~l~~~G~~vi~~ 36 (272)
T PRK08589 7 KVAVITGAS-TGIGQA-----SAIALAQEGAYVLAV 36 (272)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 677764 445566789988764
No 491
>PRK07775 short chain dehydrogenase; Provisional
Probab=23.41 E-value=90 Score=31.05 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|.++||||- ++||+ .+.+-|.++|++|...
T Consensus 11 ~~vlVtGa~-g~iG~-----~la~~L~~~G~~V~~~ 40 (274)
T PRK07775 11 RPALVAGAS-SGIGA-----ATAIELAAAGFPVALG 40 (274)
T ss_pred CEEEEECCC-chHHH-----HHHHHHHHCCCEEEEE
Confidence 689999984 77764 4555666789887544
No 492
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=23.39 E-value=3.4e+02 Score=27.90 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=45.6
Q ss_pred EeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHH
Q 009814 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 382 (524)
Q Consensus 303 VGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~ 382 (524)
.|||. +..-+.++++.+|+++. .+.+..++...-. ....|+.+..-+-.++||-.|-+..+..+.
T Consensus 16 tgky~----s~~~~~~ai~aSg~~iv-Tva~rR~~~~~~~----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~ 80 (248)
T cd04728 16 TGKYP----SPAIMKEAIEASGAEIV-TVALRRVNIGDPG----------GESFLDLLDKSGYTLLPNTAGCRTAEEAVR 80 (248)
T ss_pred cCCCC----CHHHHHHHHHHhCCCEE-EEEEEecccCCCC----------cchHHhhccccCCEECCCCCCCCCHHHHHH
Confidence 35776 55667899999998874 3466666532111 112355554444569999888776666666
Q ss_pred HHHHHHH
Q 009814 383 AAKYARE 389 (524)
Q Consensus 383 air~are 389 (524)
.++-|||
T Consensus 81 ~a~lare 87 (248)
T cd04728 81 TARLARE 87 (248)
T ss_pred HHHHHHH
Confidence 6666666
No 493
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.37 E-value=1.1e+02 Score=29.31 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=23.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
||-++|||| -++||+. +.+.|-++|++|.+.=.
T Consensus 6 ~k~vlItG~-sg~iG~~-----la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 6 MPRALITGA-SSGIGKA-----TALAFAKAGWDLALVAR 38 (241)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEEeC
Confidence 578999998 4666655 44566678988877644
No 494
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=23.34 E-value=1.1e+02 Score=31.24 Aligned_cols=30 Identities=43% Similarity=0.540 Sum_probs=22.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|| |+||||. |-+.+.+.+.|.++|++|.++
T Consensus 1 m~-vlVtGat------G~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 1 MR-VLVTGGS------GYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred Ce-EEEECCC------ChHHHHHHHHHHHCCCeEEEE
Confidence 44 7899976 555566667777889998865
No 495
>TIGR01419 nitro_reg_IIA PTS IIA-like nitrogen-regulatory protein PtsN. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum.
Probab=23.24 E-value=31 Score=31.18 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=25.5
Q ss_pred chHhhHHHHhhhhcCCC-CCCeeEEcccchHHH
Q 009814 90 TGKIYQSVIDKERKGDY-LGKTVQVVPHITDEI 121 (524)
Q Consensus 90 ~g~iy~~vi~ker~g~y-lg~tvqviphit~ei 121 (524)
.-.+++.+++||+.|-+ +|..| .+||...+-
T Consensus 39 ~~~~~~~i~~RE~~~~t~i~~~i-AiPH~~~~~ 70 (145)
T TIGR01419 39 EQDVFECLLAREKLGSTGVGNGI-AIPHGRLSG 70 (145)
T ss_pred HHHHHHHHHHHhcccCCCCCCce-eccccCccc
Confidence 44689999999999985 58878 999987663
No 496
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=23.20 E-value=45 Score=31.33 Aligned_cols=31 Identities=42% Similarity=0.723 Sum_probs=24.6
Q ss_pred cceEEEccCCccccCCCCc---------cccccCCCCCCCCc
Q 009814 55 HGEVFVLDDGGEVDLDLGN---------YERFMDIKLTRDNN 87 (524)
Q Consensus 55 hgevfv~~dg~e~dldlg~---------yerf~~~~~~~~~n 87 (524)
-|.|+|||=|.| =-||| ||||++..|.+.-|
T Consensus 82 tGdviVTDFgD~--~~lgNI~~d~L~~~f~~W~~~~l~~sln 121 (153)
T PF08756_consen 82 TGDVIVTDFGDE--PPLGNIQTDSLTDAFDRWLDSPLAKSLN 121 (153)
T ss_pred cCCEEEecCCCC--CCccccccCcHHHHHHHHhcCccccccc
Confidence 489999999988 45787 88888888776543
No 497
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.14 E-value=5.7e+02 Score=27.96 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=86.4
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCC
Q 009814 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVP 237 (524)
Q Consensus 158 pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~ 237 (524)
-++++.|+.....-++++..+-.|. -+.+ -+..|.-...|++.|+.+.++-|.+. -.+++++.+--..
T Consensus 232 ~i~~~Y~~W~~~~~~~~V~l~Y~sm---yg~T----~~ma~aiaegl~~~gv~v~~~~~~~~--~~~eI~~~i~~a~--- 299 (388)
T COG0426 232 EIVEAYRDWAEGQPKGKVDLIYDSM---YGNT----EKMAQAIAEGLMKEGVDVEVINLEDA--DPSEIVEEILDAK--- 299 (388)
T ss_pred HHHHHHHHHHccCCcceEEEEEecc---cCCH----HHHHHHHHHHhhhcCCceEEEEcccC--CHHHHHHHHhhcc---
Confidence 3678888887776655555554432 2221 23678888899999999988877765 3344443332211
Q ss_pred CCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHH
Q 009814 238 EQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSIL 317 (524)
Q Consensus 238 ~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~ 317 (524)
.=|+|.|-+.+- ..|. +...-..+.....+ ...+++.|.|++...+-.-+.
T Consensus 300 -~~vvGsPT~~~~-~~p~-------------------------i~~~l~~v~~~~~~--~k~~~vfgS~GW~g~av~~i~ 350 (388)
T COG0426 300 -GLVVGSPTINGG-AHPP-------------------------IQTALGYVLALAPK--NKLAGVFGSYGWSGEAVDLIE 350 (388)
T ss_pred -eEEEecCcccCC-CCch-------------------------HHHHHHHHHhccCc--CceEEEEeccCCCCcchHHHH
Confidence 124454444333 2221 11111111112221 235999999999888999999
Q ss_pred HHHHHcCCceeEE-eeeEEeeCCC
Q 009814 318 KALLHASVDLRKK-LVIDWIPACD 340 (524)
Q Consensus 318 ~aL~~ag~~~~v~-v~i~~i~s~~ 340 (524)
+.|+.+|.+.... +++++.|+++
T Consensus 351 ~~l~~~g~~~~~~~i~vk~~P~~~ 374 (388)
T COG0426 351 EKLKDLGFEFGFDGIEVKFRPTEE 374 (388)
T ss_pred HHHHhcCcEEeccceEEEecCCHH
Confidence 9999999998776 7888877653
No 498
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.07 E-value=96 Score=29.88 Aligned_cols=29 Identities=41% Similarity=0.623 Sum_probs=21.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~ 36 (524)
|-|+|||| -||||+-++ +.|.+.|++|.+
T Consensus 6 k~ilItGa-s~gIG~~la-----~~l~~~G~~vv~ 34 (253)
T PRK08642 6 QTVLVTGG-SRGLGAAIA-----RAFAREGARVVV 34 (253)
T ss_pred CEEEEeCC-CCcHHHHHH-----HHHHHCCCeEEE
Confidence 67999998 588887644 456677887643
No 499
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=22.98 E-value=89 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=21.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~ 37 (524)
|-++||||- +|||+- +.+.|.++|++|.+.
T Consensus 11 k~vlVtGas-~giG~~-----ia~~l~~~G~~V~~~ 40 (278)
T PRK08277 11 KVAVITGGG-GVLGGA-----MAKELARAGAKVAIL 40 (278)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 677654 445566789988654
No 500
>PLN02623 pyruvate kinase
Probab=22.94 E-value=8.2e+02 Score=28.24 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc
Q 009814 282 KEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK 361 (524)
Q Consensus 282 ~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~ 361 (524)
++|+++--.+.+.- --|++ .|+...+--..+.+.++.++.+..+...|. . ++......+++.
T Consensus 279 kD~~di~f~~~~~v--D~ial--SFVr~a~DV~~~r~~l~~~~~~~~iiakIE---t-----------~eaVeNldeIl~ 340 (581)
T PLN02623 279 KDWEDIKFGVENKV--DFYAV--SFVKDAQVVHELKDYLKSCNADIHVIVKIE---S-----------ADSIPNLHSIIT 340 (581)
T ss_pred HHHHHHHHHHHcCC--CEEEE--CCCCCHHHHHHHHHHHHHcCCcceEEEEEC---C-----------HHHHHhHHHHHH
Confidence 35566544444321 13555 477655455566677777776655443332 1 112222346677
Q ss_pred CCCEEEECCCCCCC----chh----HHHHHHHHHHHcCCCEEEEh
Q 009814 362 GADGILVPGGFGNR----GVQ----GKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 362 ~~DGIllpGGfG~r----g~e----g~i~air~are~~iP~LGIC 398 (524)
..|||++. +||- +.+ -.-+.++.|++.++|+...+
T Consensus 341 g~DgImIg--rgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaT 383 (581)
T PLN02623 341 ASDGAMVA--RGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVAT 383 (581)
T ss_pred hCCEEEEC--cchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 99999985 4452 222 22345667889999997443
Done!