BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009815
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
+ MEY+PG + + S ++ R V L+ I S GF H D P N+ +D
Sbjct: 146 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLD--K 203
Query: 472 GGRLIFYDFGMMGSISPNIREGLLEA 497
G L DFG ++ +EG++
Sbjct: 204 SGHLKLADFGTCMKMN---KEGMVRC 226
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
+ MEY+PG + + S ++ R V L+ I S GF H D P N+ +D
Sbjct: 151 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLD--K 208
Query: 472 GGRLIFYDFGMMGSISPNIREGLLEA 497
G L DFG ++ +EG++
Sbjct: 209 SGHLKLADFGTCMKMN---KEGMVRC 231
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
+ MEY+PG + + S ++ R V L+ I S GF H D P N+ +D
Sbjct: 151 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLD--K 208
Query: 472 GGRLIFYDFGMMGSISPNIREGLLEA 497
G L DFG ++ +EG++
Sbjct: 209 SGHLKLADFGTCMKMN---KEGMVRC 231
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
L M ++ G + ++ ++LG DR + Y + L I + G H D PGN+AV++
Sbjct: 107 LVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNE-- 163
Query: 472 GGRLIFYDFGM 482
L DFG+
Sbjct: 164 DCELKILDFGL 174
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 412 LTMEYVPGIKI-NRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDV 470
+ +EY PG ++ + I S D L + R+ + S + + S G+ H D P N+ D+
Sbjct: 85 MVLEYCPGGELFDYIISQDRLSEEETRVVFRQIVSAVAYVHSQGYAHRDLKPENLLFDEY 144
Query: 471 NGGRLIFYDFGMMGSISPN 489
+ +LI DFG+ N
Sbjct: 145 HKLKLI--DFGLCAKPKGN 161
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
L ME +PG ++ + + E +DR+++ + S L + GF+H D P N+ VD
Sbjct: 319 LVMEKLPGRLLSDMLAAGE-EIDREKILGSLLRS-LAALEKQGFWHDDVRPWNVMVDARQ 376
Query: 472 GGRLIFYDFG 481
RLI DFG
Sbjct: 377 HARLI--DFG 384
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
L ME +PG ++ + + E +DR+++ + S L + GF+H D P N+ VD
Sbjct: 319 LVMEKLPGRLLSDMLAAGE-EIDREKILGSLLRS-LAALEKQGFWHDDVRPWNVMVDARQ 376
Query: 472 GGRLIFYDFG 481
RLI DFG
Sbjct: 377 HARLI--DFG 384
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
L ME +PG ++ + + E +DR+++ + S L + GF+H D P N+ VD
Sbjct: 319 LVMEKLPGRLLSDMLAAGE-EIDREKILGSLLRS-LAALEKKGFWHDDVRPWNVMVDARQ 376
Query: 472 GGRLIFYDFGMM 483
RLI DFG +
Sbjct: 377 HARLI--DFGSI 386
>pdb|4FCA|A Chain A, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Bacillus Anthracis Str. Ames
Length = 525
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 461 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG 493
HPG + NGG L FY++ G + +++G
Sbjct: 86 HPGENKISSSNGGLLYFYNYHNTGEVVAKVKKG 118
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 112 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 163
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 128 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 179
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 108 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 159
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 128 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 179
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 109 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 160
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 422 INRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 481
I +I S DE R + S LE + G H D P NI +++ + DFG
Sbjct: 121 IRKIGSFDETCT---RFYTAEIVSALEYLHGKGIIHRDLKPENILLNE--DMHIQITDFG 175
Query: 482 MMGSISPNIREGLLEAFYG 500
+SP ++ AF G
Sbjct: 176 TAKVLSPESKQARANAFVG 194
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 156 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 207
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
+ MEY+PG + + S ++ + V L+ I S G H D P N+ +D
Sbjct: 152 MVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLD--K 209
Query: 472 GGRLIFYDFG 481
G L DFG
Sbjct: 210 HGHLKLADFG 219
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 156 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 207
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
+RK + +E+ + I HG H+D P N + D G L DFG+ + P+
Sbjct: 156 ERKSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPD 207
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 419 GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFY 478
G +N I L + + Y + L+ I S G H D P N+AV++ + R++
Sbjct: 116 GADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRIL-- 173
Query: 479 DFGM 482
DFG+
Sbjct: 174 DFGL 177
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 299 EPIAAASLGQVHRARLKGEEVVVKV 323
E I A S G VHRA G +V VK+
Sbjct: 43 EKIGAGSFGTVHRAEWHGSDVAVKI 67
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 299 EPIAAASLGQVHRARLKGEEVVVKV 323
E I A S G VHRA G +V VK+
Sbjct: 43 EKIGAGSFGTVHRAEWHGSDVAVKI 67
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI 486
HG H D P NI +D+ G++ DFG+ G +
Sbjct: 144 HGVIHRDVKPSNILLDER--GQIKLCDFGISGRL 175
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 419 GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFY 478
G +N I L + + Y + L+ I S G H D P N+AV++ + R++
Sbjct: 116 GADLNNIVKSQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRIL-- 173
Query: 479 DFGM 482
DFG+
Sbjct: 174 DFGL 177
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 416 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRL 475
++ G +N I +L D + Y + L+ I S H D P N+AV++ L
Sbjct: 109 HLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE--DSEL 166
Query: 476 IFYDFGM 482
DFG+
Sbjct: 167 KILDFGL 173
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 416 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRL 475
++ G +N I +L D + Y + L+ I S H D P N+AV++ L
Sbjct: 113 HLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE--DSEL 170
Query: 476 IFYDFGM 482
DFG+
Sbjct: 171 KILDFGL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,964,475
Number of Sequences: 62578
Number of extensions: 563980
Number of successful extensions: 1540
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 30
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)