BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009815
(524 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/338 (54%), Positives = 247/338 (73%), Gaps = 5/338 (1%)
Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
RW+R YS +R ++IWGFVLT +++ WLN +K+SY GG TEEK RR+ AKW++E+
Sbjct: 33 RWNR-GNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIREN 91
Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
+L LGPTFIK+GQ FSTR D+ EYV+ELS+LQD+VP F E A I+EEELG P+ +
Sbjct: 92 LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151
Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
+ FD P+AAASLGQVH+A+L GE+VVVKVQRPGLK LF IDL L+ IA+Y Q P
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HP 210
Query: 352 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
K G RDW IY+EC +L+QE DY +E +A+ F NF+ D+VKVP ++W YT+ QI
Sbjct: 211 KW-GRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQI 269
Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
LT+EY+PGIKI+ +L+ G++RK L + +YL Q+L+HGFFHADPHPGN+AV
Sbjct: 270 LTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSP-E 328
Query: 472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
G LIFYDFGMMG I+P+ + L++ +G+ EK+A+++
Sbjct: 329 AGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERI 366
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 275 bits (703), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 208/329 (63%), Gaps = 13/329 (3%)
Query: 184 QRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKI 243
+R L + L FVF F +T + RR A+WL + +L LGPTFIKI
Sbjct: 24 RRQLAVTRVFLLFVF--------FLSWDRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIKI 75
Query: 244 GQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA 303
GQ STR DI+ EY++ ++LQD+VPPF S A++++E+EL +D++F++F+V P+A+
Sbjct: 76 GQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLAS 135
Query: 304 ASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDW 360
ASLGQVHRA L GE VVVKVQRPGL L ++D + L ++ P + K +
Sbjct: 136 ASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEI 195
Query: 361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI 420
AIY E S+L+ EIDY E NAE F NF D V+VP I+W+YTT +LT+EY+PGI
Sbjct: 196 EAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGI 255
Query: 421 KINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF 480
K++ Q+L+ G++ + + + +YL+Q+L GFF +DPHPGN+AVD + G LIFYDF
Sbjct: 256 KVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDF 313
Query: 481 GMMGSISPNIREGLLEAFYGIYEKDADKV 509
G M + ++ +++ F+ + KD ++V
Sbjct: 314 GTMAEVKIIAKDQMVQTFFAVLRKDTNQV 342
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 218/370 (58%), Gaps = 19/370 (5%)
Query: 143 KKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWL 202
K +E++G F +S + ++ + + R + + R + I +L F+ W
Sbjct: 34 KSHLEDLGPVSDMFPESWEYHPDLIM----EFYRKRPLQVLGRLINILFPLLRFILGIWW 89
Query: 203 NNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDEL 262
RG ++ V R KA+ L+E + LGPT+IK+GQ STR D++ ++DEL
Sbjct: 90 EK----LRG---KDPTVSRAKAIQ--LRELLTNLGPTYIKVGQALSTRPDLVPPVFLDEL 140
Query: 263 SELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVV 321
+ LQDQ+P FP+E A +EEELGAP ++++ EPIAAASLGQV++ +LK GE V V
Sbjct: 141 TTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAV 200
Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA 381
KVQRP L +D+ +R ++ + ++ + D VAI DE AS +++E++Y QEA
Sbjct: 201 KVQRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEEMNYYQEA 257
Query: 382 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 441
N E FA + + + VP+I+W+YT ++LTME+V GIK+ I+++ G+D L
Sbjct: 258 INGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEV 317
Query: 442 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 501
V+ L Q+L HGFFHADPHPGN+ + GRL + DFGMM +I P R GL+EA +
Sbjct: 318 GVQCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGLIEAVVHL 375
Query: 502 YEKDADKVDK 511
+D D + K
Sbjct: 376 VNRDFDSLAK 385
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 232 bits (592), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 192/338 (56%), Gaps = 20/338 (5%)
Query: 172 GRWSRFKTYSTIQRTLEI---WGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKW 228
+ R + + + R LE+ +GF LT + Q Y+ E+
Sbjct: 25 ANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAED------------ 72
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E + +LGPTFIK+GQ STR D++ +++++EL +LQDQ+PPF ++ A ++EE+LG
Sbjct: 73 LRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMK 132
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+D+ + P+AAASLGQV+RA L GEEV VKVQRP L+ +DL +R+ A+
Sbjct: 133 VDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ P + G D I DE L++EIDY E NAE FA NF VKVP I+W+Y+
Sbjct: 193 RFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYS 250
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
++LT+E++ G K+ + G+D + R V S L Q+L HGFFHADPHPGN+
Sbjct: 251 NQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFA 310
Query: 468 DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD 505
GR+ + DFGMM + P +E + + + KD
Sbjct: 311 --TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKD 346
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 19/346 (5%)
Query: 178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLG 237
+ + ++R+LEI G + F + ++ ++ + M + LRR RLG
Sbjct: 108 QPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR---------IFTRLG 158
Query: 238 PTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFD 297
PTF+K+GQ STR D+ +Y++EL+ELQD +P FP A + +E EL L+ +F
Sbjct: 159 PTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVS 218
Query: 298 VEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG 355
EPIAAASLGQV++A+L+ G+ V VKVQRPG+++ +D +R + + + K D
Sbjct: 219 PEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDF 275
Query: 356 AKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTME 415
D + + DE A +YQE++Y QEA NA F + D V VP IFW+YT+ ++LTME
Sbjct: 276 ITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTME 335
Query: 416 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN-IAVDDVNGGR 474
+V G K+N +++ G+ L ++ L Q+L +GFFHADPHPGN +A D G+
Sbjct: 336 WVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GK 392
Query: 475 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVDK-YPRFKIIS 519
L F DFGMM R ++ + +D + + + Y K +S
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLS 438
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 219 bits (559), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 173/280 (61%), Gaps = 10/280 (3%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP F+K GQ STR D+L EY DEL+ LQD+VPPF + A +VE LG ++++F
Sbjct: 59 LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118
Query: 296 FDVEPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
FD++P+A+AS+ QVH+A L+ G EV VKV RPG+ + + DL +R +A +++K+
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178
Query: 350 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP 409
+DG + + E L+ E+D EAANA NFK D + VP +F++Y++
Sbjct: 179 --FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSR 236
Query: 410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 469
++LT+E++ GI + +I+ L E GVD ++L R+ VE + Q+ HGFFHAD HPGNI V
Sbjct: 237 EVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFV-- 294
Query: 470 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
GR I DFG++GS++ + L F + +D +V
Sbjct: 295 AADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRV 334
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ +EL++LQDQVPPF S A++IVE+ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A+LK G+ V VKV RP + + D DL +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW+Y+TP +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 179/291 (61%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + DEL++LQDQVPPF S A+ +VE LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAP 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A +K G+ V VKV RP + + D DL LR IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
++WE+ TP +L ME + G+ I+++++L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 179/291 (61%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + EL++LQDQVPPF S A++I+E+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAP 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A LK G++V VKV RP + + D DL LR IA
Sbjct: 112 VDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
++WEY T +L ME + G+ I+++ +L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMYWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 201/369 (54%), Gaps = 24/369 (6%)
Query: 156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
F+K E V V SR S + R +EI W L + + + + G
Sbjct: 110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGL------YWSTLTYDFLVGRD 159
Query: 215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
EE R A+ L+ + LGP+FIK GQ + R DI+ ++Y++EL LQD VPPFP+
Sbjct: 160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215
Query: 275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
E A +I+EEELG PL+++F + + IAAASLGQV+RA L+ GE+V +KVQRP ++ +
Sbjct: 216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275
Query: 333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFK 392
DL R +A +L + G + I DE L +E+DYT EA N E F NFK
Sbjct: 276 YRDLFLFRTLASFLNGFSLQKLGCNAEL--IVDEFGEKLLEELDYTLEARNIEDFLENFK 333
Query: 393 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 452
D VK+P ++ P++L ME++ GI+ Q++ + G+D V + L Q+L
Sbjct: 334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393
Query: 453 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVD 510
G FH DPHPGNI A+ D GR+ + DFG + +S ++ L++A + + E + +
Sbjct: 394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450
Query: 511 KYPRFKIIS 519
+ R ++
Sbjct: 451 DFTRLGFLA 459
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 215 bits (547), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 180/291 (61%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + +EL++LQDQVPPF S A+ +VE+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAP 111
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+D +F+ F+ P+A+AS+ QVH A +K G+ V VKV RP + + D DL LR IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+ +++ +DG + R+ VA +D+ L+ E+D +EAAN NF +D + VP
Sbjct: 172 VWAERL--WADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
++WE+ TP +L ME + G+ I+++++L GVD +L R VE + Q+ GFFHAD
Sbjct: 227 EMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286
Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V D + GR I DFG++G++S + L + F +++D +V
Sbjct: 287 HPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRV 337
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 214 bits (546), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 172/284 (60%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ +V ++EE+LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQLGKK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ +VF RFDVEP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 ISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
K+ +D V + + +Y E+D +EAANA NF+ + VP ++W++
Sbjct: 179 KV--SADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWC 236
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + GI++ + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
VN + I D G++GS++P ++ L + +++D +V
Sbjct: 297 STVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRV 340
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 175/291 (60%), Gaps = 15/291 (5%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ +LGP F+K GQ STR D+L + DEL++LQD+VPPF + A +IVE LG P
Sbjct: 53 LRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
L +F RFD P+A+AS+ QVH A L+ G EV VKV RPG+ + D DL +R +A
Sbjct: 113 LSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMRDVA 172
Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
+++K+ +DG + R+ VA +D+ L+ E+D +EAANA NF + + VP
Sbjct: 173 TWMEKL--WADGKRLKPREVVAEFDK---YLHDELDLMREAANASQLRRNFAKSELLLVP 227
Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
+FW++ T ++ ME + G++++ L GVD +L R VE + Q+ GFFHAD
Sbjct: 228 EVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADM 287
Query: 461 HPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
HPGNI V + GR I DFG++G++S + L + F +++D +V
Sbjct: 288 HPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRV 338
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 212 bits (540), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 180/312 (57%), Gaps = 21/312 (6%)
Query: 207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
FSY G+ + L R K A L++ ++ LGP ++KI Q S+R D++ Y+DE
Sbjct: 96 FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155
Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
LS LQDQ+ PF +E A +++E+ELG P+D++F EP+AAASLGQV++ARL+ G+ V
Sbjct: 156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215
Query: 320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 379
VKVQRPG++ +D LR IA ++ K+ D A+ DE A+ L++E+DY
Sbjct: 216 AVKVQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLN 271
Query: 380 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 439
EA N F + + V VP ++ EY+T ++L ME+V G K+N + L L
Sbjct: 272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLV 323
Query: 440 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 499
V Q+L +GF+HADPHPGN G+L + DFGMMG P +R+G +EA
Sbjct: 324 EVGVYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381
Query: 500 GIYEKDADKVDK 511
+ +D + K
Sbjct: 382 HLVNRDFKALAK 393
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 171/284 (60%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ +V+++E +LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQLGKK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ DVF RFD+EP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 ISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
K+ +D V + + +Y E+D +EAANA NF+ + VP ++W++
Sbjct: 179 KL--SADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWC 236
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + GI++ + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
V + I D G++GS++P ++ L + +++D +V
Sbjct: 297 STVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRV 340
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 172/284 (60%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ RLGP F+K GQ STR D++ + +EL++LQD+VPPFPS+ + + V + LG P
Sbjct: 53 LRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+++VF FD +P+A+AS+ QVH L G EV VKV RP + ++ + DL LRV A +L+
Sbjct: 113 IEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLE 172
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
++ P DG + + E + L+ E+D +EAANA N +D + +P + W+ +
Sbjct: 173 RLSP--DGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDLS 230
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
+ ++L ME + G+ I++I++L G+D +L R V + Q+ GFFHAD HPGNI V
Sbjct: 231 SAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMV 290
Query: 468 DDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
GR I DFG++G++ +E L + F + +D +V
Sbjct: 291 STAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRV 334
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 166/277 (59%), Gaps = 5/277 (1%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A+ ++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKLIEEQLGARICDVFSR 125
Query: 296 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
FD +P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +D
Sbjct: 126 FDEKPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERV--SAD 183
Query: 355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 414
V + + +Y E+D +EAANA NF+ D + VP ++W++ P++L M
Sbjct: 184 ARLLHPVQVVMDYEKTIYDELDLLREAANASQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 415 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 472
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWA 303
Query: 473 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++P ++ L + +++D +V
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRV 340
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 171/284 (60%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ +D + V I + +Y E+D +EAANA NF+D + + VP ++W+
Sbjct: 180 RA--SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELMYVPQVYWDLC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
V + I D G++GS++ ++ L + +++D +V
Sbjct: 298 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRV 341
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/277 (40%), Positives = 165/277 (59%), Gaps = 5/277 (1%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A+ ++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKLIEEQLGARICDVFSR 125
Query: 296 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
FD P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +D
Sbjct: 126 FDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERV--SAD 183
Query: 355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 414
V + + +Y E+D +EAAN+ NF+ D + VP ++W++ P++L M
Sbjct: 184 ARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 415 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 472
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKMLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWA 303
Query: 473 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++P ++ L + +++D +V
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRV 340
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/277 (40%), Positives = 166/277 (59%), Gaps = 5/277 (1%)
Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
LGP FIK GQ STR D+L ++ DEL LQD+VPPF + A++++EE+LGA + DVF R
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINLIEEQLGARICDVFSR 125
Query: 296 FDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
FD P+A+AS+ QVH A LK GEEVVVKV RPGLK + DL L ++A +++ +D
Sbjct: 126 FDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWLFILARMAERV--SAD 183
Query: 355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 414
V + + +Y E+D +EAAN+ NF+ D + VP ++W++ P++L M
Sbjct: 184 ARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVM 243
Query: 415 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--G 472
E + G+++ + L + D K L VE + QI FFHAD HPGNI V VN
Sbjct: 244 ERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWS 303
Query: 473 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++P ++ L + +++D +V
Sbjct: 304 PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRV 340
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 171/284 (60%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL LQD+VPPF S+ ++ ++EE+LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQLGKK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ +VF RFDV+P+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 ISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFILARAAE 178
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ +D V + + +Y E+D +EAANA NF+ + VP ++W++
Sbjct: 179 RF--SADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWC 236
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + G+++ + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
VN + I D G++GS++P ++ L + +++D +V
Sbjct: 297 STVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRV 340
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 170/288 (59%), Gaps = 9/288 (3%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ RLGP F+K GQ STR D+L + DEL+ LQD+VPPFPS A++ +E P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ DVF +FD PIA+AS+ QVH A ++ + EV VKV RP ++ + + DL + ++A
Sbjct: 113 VGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMA 172
Query: 344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 403
+++K+ P DG + + E L+ E+D +EAANA N ++ V +P +F
Sbjct: 173 GWVEKLSP--DGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMF 230
Query: 404 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 463
W++ P+++ ME + G+ I ++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 464 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
NI V GR I DFG++G+++ + +E L + F + +D +V
Sbjct: 291 NIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRV 338
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++E +LGA
Sbjct: 59 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVALIESQLGAK 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 119 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKGAE 178
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ +D + V I + +Y E+D +EAANA NF+ + + VP ++W+
Sbjct: 179 RAS--ADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLC 236
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + G+ + + +L + D K L VE + Q+ H FFHAD HPGNI V
Sbjct: 237 RPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRHSFFHADMHPGNIFV 296
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
V + I D G++GS++ ++ L +++D +V
Sbjct: 297 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRV 340
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ +D + V I + +Y E+D +EAANA NF+ + + VP ++W+
Sbjct: 180 RA--SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
V + I D G++GS++ ++ L +++D +V
Sbjct: 298 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRV 341
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L ++ DEL+ LQD+VPPF + +V+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+D+ F RFD EP+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L + A +
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ ++ + V + + +Y E+D +EAANA NF+ + VP I+W++
Sbjct: 180 RA--STEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + G+ + + +L + G D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++P ++ L +++D KV
Sbjct: 298 STRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKV 341
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL LQD+VPPF + AV+++EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV RPGLK + DL L +IA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ +D + V I + +Y E+D +EAANA NF+ + + VP ++W+
Sbjct: 180 RA--SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
V + I D G++GS++ ++ L +++D +V
Sbjct: 298 STVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRV 341
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 169/288 (58%), Gaps = 9/288 (3%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ LGP F+K GQ STR D++ + DEL+ LQD+VPPF + A++ +E P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ +VF FD +P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 403
+++ + +DG + + E + L+ E+D +EAANA N + +D V +P +F
Sbjct: 173 GWVESL--SADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVF 230
Query: 404 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 463
W++ ++L ME + G+ IN+++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 464 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
NI V GR I DFG++G+++ +E L + F + +D +V
Sbjct: 291 NIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRV 338
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 202 bits (513), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 168/288 (58%), Gaps = 9/288 (3%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ LGP F+K GQ STR D++ + DEL+ LQD+VPPF + A++ +E P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ +VF FD +P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 403
+++ + +DG + + E + L+ E+D +EAANA N + +D V +P +F
Sbjct: 173 GWVESL--SADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVF 230
Query: 404 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 463
W++ ++L ME + G+ IN++ L GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 464 NIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
NI V GR I DFG++G+++ +E L + F + +D +V
Sbjct: 291 NIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRV 338
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 170/284 (59%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L + + L +LQD+VPPFPSE A I+E+ LGAP
Sbjct: 55 LRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAP 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ ++F F +P+A+AS+ QVH A L G++VVVKV RPG++ + DL + ++A L+
Sbjct: 115 VSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLE 174
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
K S+G + V + + S ++ E+D +EAANA NF++ + +P I W+YT
Sbjct: 175 KY--WSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDWDYT 232
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
+L ME + GI I + +L++ GV+ + L VE + Q+ FFHAD HPGNI V
Sbjct: 233 RKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFV 292
Query: 468 DDVNGG--RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
D N + I DFG++G+++P+ + L + +D +V
Sbjct: 293 DVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQV 336
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 170/288 (59%), Gaps = 9/288 (3%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ RLGP F+K GQ STR D+L + +EL+ LQD+VPPF + AV+ +E P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRP 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 343
+ +VF F+ P+A+AS+ QVH A ++ EV VKV RPG+ + D DL +R +A
Sbjct: 113 VGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMA 172
Query: 344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 403
+++ + +DG + + E + L+ E+D +EAANA N + + V++P I
Sbjct: 173 GWVESLS--ADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEIL 230
Query: 404 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 463
W++ P++L ME + G+ I++I+ L GVD ++L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 464 NIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
NI V G GR I DFG++GS++ +E L + F + +D +V
Sbjct: 291 NIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRV 338
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 165/284 (58%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + DEL+ LQDQVPPFP + A++++E +LGAP
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ +F RFD +P+A+AS+ QVH A+LK GEEVVVKV RPGLK + DL L ++A +
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLLARIAE 178
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
+ +D + V + + ++ E+D +EAANA NF+ + VP ++W+
Sbjct: 179 RA--SADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYWDLC 236
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
Q+L ME + G+ + + +L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 237 RHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFV 296
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++ ++ L +++D KV
Sbjct: 297 STRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKV 340
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 199 bits (506), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 179/301 (59%), Gaps = 11/301 (3%)
Query: 213 MTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPF 272
M + L+ + A L+ ++ LGP FIK GQ STR D++ +Y EL++LQD+VPPF
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 273 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDL 331
+ + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE+V VKV RP L +
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPV 157
Query: 332 FDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFA 388
+ DL +R A +++++ +DG + R+ VA +D+ L+ E+D +EAANA
Sbjct: 158 IEQDLSLMRFGAGWVERL--FADGKRLKPREVVAEFDK---YLHDELDLMREAANASQLG 212
Query: 389 SNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLE 448
NF++ D + VP +F++Y T +LT+E++ G ++ I L G+D +L Y VE +
Sbjct: 213 RNFQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFT 272
Query: 449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADK 508
Q+ GFFHAD HPGNI V N R I DFG++G+++ + L F + +D +
Sbjct: 273 QVFRDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRR 330
Query: 509 V 509
V
Sbjct: 331 V 331
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 199 bits (505), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 172/298 (57%), Gaps = 5/298 (1%)
Query: 213 MTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPF 272
M + L+ + A L+ ++ LGP FIK GQ STR D++ +Y EL++LQD+VPPF
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 273 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDL 331
+ + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE V VKV RP L L
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPL 157
Query: 332 FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNF 391
+ DL +R A +++++ SDG + + + E L+ E+D +EAANA NF
Sbjct: 158 IEQDLSLMRFGAAWVERL--FSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNF 215
Query: 392 KDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL 451
+ + + VP +F++Y T +LT+E++ G + I L G+D +L Y VE + Q+
Sbjct: 216 HNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVF 275
Query: 452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
GFFHAD HPGNI V N R I DFG++G+++ + L F + +D +V
Sbjct: 276 RDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRV 331
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 169/288 (58%), Gaps = 9/288 (3%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+E++ LGP F+K GQ STR D++ + +EL+ LQD+VPPF S+ AV +E
Sbjct: 53 LREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKK 112
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGE-----EVVVKVQRPGLKDLFDIDLKNLRVIA 343
LD +F F+ EP+A+AS+ QVH A + +V VKV RPG+K + D DL + ++A
Sbjct: 113 LDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALMHMMA 172
Query: 344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 403
+++++ +DG + + E + L+ E+D +EA+NA N + +D V +P ++
Sbjct: 173 RWVERL--SADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVY 230
Query: 404 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 463
W++ ++ M+ + G+ I++++ L E GVD +L R V + Q+ GFFHAD HPG
Sbjct: 231 WDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPG 290
Query: 464 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
NI V + GR I DFG++G+++ +E L + F + +D +V
Sbjct: 291 NIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRV 338
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 166/284 (58%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++ ++ L +++D KV
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKV 341
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 166/284 (58%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++ ++ L +++D KV
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKV 341
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 166/284 (58%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++ ++ L +++D KV
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKV 341
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 166/284 (58%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP FIK GQ STR D+L + +EL+ LQD+VPPFP E AV +EE+LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
++ S+ + V + + + E+D +EAANA NF+ + VP ++W++
Sbjct: 180 RVS--SEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWC 237
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
P++L ME + GI + +++L + D K L VE + Q+ FFHAD HPGNI V
Sbjct: 238 RPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV 297
Query: 468 DDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
+ I D G++GS++ ++ L +++D KV
Sbjct: 298 STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKV 341
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 161/284 (56%), Gaps = 5/284 (1%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D+L ++ DEL LQD+VPPF S+ AV I+EE L +P
Sbjct: 55 LRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSP 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
+ ++F F P+A+AS+ QVH A LK G+EVVVKV RPG++ +D+ + ++A ++
Sbjct: 115 VSELFADFQTYPMASASIAQVHAATLKNGKEVVVKVIRPGIEKTIRLDIALMLLVARLVE 174
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
DG + V + + + E+D +EAAN NF + + +P ++WE T
Sbjct: 175 NY--WEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELIYIPEVYWEMT 232
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
++L ME + G+ I ++ L + V+ K L VE + Q+ FFHAD HPGNI V
Sbjct: 233 HSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFV 292
Query: 468 DDVNGG--RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
D N R I D G++G+++P + L + +D +V
Sbjct: 293 DVSNPANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQV 336
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 156/286 (54%), Gaps = 7/286 (2%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA I+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARIIIETALGKS 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ F FD P+A+AS+ QVH A L G EVVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
P +D + I E + L E+D +E ANA + ++ D + VP + W +T
Sbjct: 175 HTHPNADKIRP--CEIVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHT 232
Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
Q+LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI V
Sbjct: 233 AEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWV 292
Query: 468 DD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
D + R I DFG+MG +S + L E F I+ KD ++
Sbjct: 293 DSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRI 338
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 186 bits (471), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 165/302 (54%), Gaps = 7/302 (2%)
Query: 209 YRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQ 268
Y G + K+ K + L+++ LGPTFIKIGQ STR D+L Y+ ELS+LQ+
Sbjct: 16 YGFGFIVDSKLNGNKKSPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKLQNN 75
Query: 269 VPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPG 327
VPP ++ EEL + +D+ F FD PI +AS+ QVH A LK G V+VK+QRPG
Sbjct: 76 VPPENFIDIENLFFEELSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGRFVIVKIQRPG 135
Query: 328 LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELF 387
+ ++ DL +I + L K A D DE QE+D+ E N + F
Sbjct: 136 IAEMMKTDLS---IIKKLLNITKTKFTDALIDPKEAIDELFISTTQELDFINEINNIKKF 192
Query: 388 ASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYL 447
+D+ +V+ P + T +I+ ME + GIKI+ ++ L G D + LG+ SY
Sbjct: 193 KKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYF 252
Query: 448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD 507
+Q+ GFFH DPHPGN+ + + + + DFG+MG+IS +++ L +A + D +
Sbjct: 253 KQVFQDGFFHGDPHPGNLLIRE---NHICYIDFGIMGTISKSLKISLNDAILAVAYHDVN 309
Query: 508 KV 509
K+
Sbjct: 310 KM 311
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 9/287 (3%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA SI+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKS 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ F FD P+A+AS+ QVH A L VVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 348 KIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
P +D + R+ VA E + L E+D +E ANA + ++ D + VP + W +
Sbjct: 175 HTHPNADKIRPREIVA---EIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSH 231
Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 466
T ++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI
Sbjct: 232 TAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIW 291
Query: 467 VDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
VD + R I DFG+MG +S + L E F I+ KD ++
Sbjct: 292 VDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRI 338
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 9/287 (3%)
Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
L+ ++ LGP F+K GQ STR D++ Q+ DEL LQD+V PF +TA SI+E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKS 114
Query: 289 LDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
++ F FD P+A+AS+ QVH A L VVVKV RP ++ D+ L+ +A ++
Sbjct: 115 VESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVE 174
Query: 348 KIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
P +D + R+ VA E + L E+D +E ANA + ++ D + VP + W +
Sbjct: 175 HTHPNADKIRPREIVA---EIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSH 231
Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 466
T ++LT+E + GI + I LD G+DRK L + + Q+ FFHAD H GNI
Sbjct: 232 TAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIW 291
Query: 467 VDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV 509
VD + R I DFG+MG +S + L E F I+ KD ++
Sbjct: 292 VDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRI 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,395,145
Number of Sequences: 539616
Number of extensions: 9080963
Number of successful extensions: 32956
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 32188
Number of HSP's gapped (non-prelim): 363
length of query: 524
length of database: 191,569,459
effective HSP length: 122
effective length of query: 402
effective length of database: 125,736,307
effective search space: 50545995414
effective search space used: 50545995414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)