Query 009816
Match_columns 524
No_of_seqs 449 out of 2024
Neff 10.7
Searched_HMMs 13730
Date Mon Mar 25 13:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009816.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009816hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 5.7E-41 4.2E-45 334.1 36.2 415 29-501 16-436 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 2E-28 1.5E-32 239.4 24.0 355 98-496 38-400 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 3.8E-14 2.7E-18 136.8 8.1 143 110-257 259-403 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 4.8E-13 3.5E-17 130.8 13.9 147 341-495 54-203 (447)
5 d1otsa_ f.20.1.1 (A:) Clc chlo 36.7 1.3E+02 0.0098 26.4 14.7 38 191-228 144-183 (444)
6 d2iuba2 f.17.3.1 (A:286-349) M 5.6 2E+02 0.015 16.9 2.6 24 231-254 37-60 (64)
7 d3b60a2 f.37.1.1 (A:10-328) Mu 5.5 6.1E+02 0.044 19.5 8.2 14 321-334 27-40 (319)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 5.3 2E+02 0.014 13.6 3.4 9 251-259 20-28 (30)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 3.3 6E+02 0.044 16.2 4.5 6 477-482 32-37 (100)
10 d1q90n_ f.23.27.1 (N:) PetN su 3.1 3.4E+02 0.024 13.0 2.5 22 111-132 7-28 (31)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.7e-41 Score=334.09 Aligned_cols=415 Identities=21% Similarity=0.384 Sum_probs=323.2
Q ss_pred ccccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCc
Q 009816 29 NLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDG 108 (524)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (524)
++..+++||.++..++++++..++++..++.+.|.+. | +|++.
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~------------------------------~g~s~------ 58 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-E------------------------------QGFSR------ 58 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S------------------------------STTCS------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------------------------hCcCH------
Confidence 3445678899999999999999999999999988774 5 67777
Q ss_pred hhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 109 TALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 109 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
+|+|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++... .++++.+++.|++.|++.+...+.
T Consensus 59 -~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 136 (447)
T d1pw4a_ 59 -GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TSSIAVMFVLLFLCGWFQGMGWPP 136 (447)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh-hhhHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999999999999999999999999999999999988875100 147889999999999999999999
Q ss_pred HHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTN 266 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (524)
..+++.|++|+++|++++++.+.+..+|..++|.+++.+.. .+||+.|++.+++.++..++.+++.++.|++......
T Consensus 137 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
T d1pw4a_ 137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI 216 (447)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred HHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh
Confidence 99999999999999999999999999999999998887763 4899999999999988888888888887766544332
Q ss_pred cccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh
Q 009816 267 EEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346 (524)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 346 (524)
++.+....++.. .+.+++...+....+..++++.++......++.....+....+.|.|+.+. ++++..
T Consensus 217 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 285 (447)
T d1pw4a_ 217 EEYKNDYPDDYN-------EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALD 285 (447)
T ss_dssp TTTCCC--------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHH
T ss_pred hhhhhhcccchh-------hccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc----cccccc
Confidence 222111111110 011111222334456678888888888888888888889999999999988 899999
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHhhhhhhhHHHH
Q 009816 347 MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFF--YRSYGHLSLALNIALMFITGMFVNGPYALIT 424 (524)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (524)
+.+.......++.+++.++.|++.||.++++..........+..... .......+.+...+..++.|++.+...+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 365 (447)
T d1pw4a_ 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG 365 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987654433333222222222 2222334566666777778888777777777
Q ss_pred HHHHhhhcccccCCCCccchhHHHHHHHhhhhhh-hhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 425 TAVSADLGTHSSLKGNSRALATVTAIIDGTGSVG-AAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVVAEVA 501 (524)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g-~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
....+..| ++.+|++.|+.+.+.+++ ..++|.+.|++.|. |+...|++.+++.+++.++...+..+++|
T Consensus 366 ~~~~~~~p--------~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 366 LHALELAP--------KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHTSC--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887776 377899999999888874 56689999999988 89999988887777776666555444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=2e-28 Score=239.40 Aligned_cols=355 Identities=13% Similarity=0.046 Sum_probs=253.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHH----HH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYY----LV 173 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~ 173 (524)
+|+++ +++|++.+++.+++.++++++|+++||+|||++++++..+..++..+..+. .+.... ++
T Consensus 38 ~g~s~-------~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 105 (417)
T d1pv7a_ 38 NHISK-------SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF-----IFGPLLQYNILV 105 (417)
T ss_dssp HCCCH-------HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH-----THHHHHHTTCHH
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHH
Confidence 77777 999999999999999999999999999999999999999988888888775 444433 34
Q ss_pred HHHHHHHhhhcchhhHHHHHhhcccc--ccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 009816 174 VQMLAGLFQSTGWPSVVAVVGNWFGK--SKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 174 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~ 251 (524)
.+.+.+.+.+...........+..++ +++.+..+........+..++|.+++.+.+.+|+..+...+....+..++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (417)
T d1pv7a_ 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHH
Confidence 45555555444444444444444332 3456677888888899999999999999888888888888887777777777
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
+..++.++....++++++... +.......+..+++..+....................+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T d1pv7a_ 186 FAKTDAPSSATVANAVGANHS--------------------AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp SSCCCSCSSSCSSHHHHSCCC--------------------CCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccchhhhhhhhhhcc--------------------cccccccccccccccccchhhhhHHHHHHHHhhhccccc
Confidence 777766554432221111100 001122234444555444444444444444444444444
Q ss_pred HHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 009816 332 YVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFI 411 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (524)
+..... ...+.+....+.......++..++..+.+++.||.++++.+..+..+..+..+.+.. .++.+..++..++
T Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 321 (417)
T d1pv7a_ 246 FFTSFF-ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---ATSALEVVILKTL 321 (417)
T ss_dssp HHTTSS-SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT---CCCHHHHHHHHHH
T ss_pred cccccc-cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc---ccccchhhHHHHH
Confidence 443320 112345556667778888889999999999999999999998888877776665543 3566667777888
Q ss_pred HHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH-HhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHH
Q 009816 412 TGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII-DGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISG 489 (524)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~ 489 (524)
.|++.+...+.....+.+.+|+ +.++++.|+. +....+|..++|.+.|++.|. |++..|++.+++.++..
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 393 (417)
T d1pv7a_ 322 HMFEVPFLLVGCFKYITSQFEV--------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCG--------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 8999888899999999988884 6779999975 455679999999999999998 99999999888877766
Q ss_pred HHHHHHH
Q 009816 490 LLLTRLV 496 (524)
Q Consensus 490 ~~~~~~~ 496 (524)
++..+..
T Consensus 394 ~~~~~~l 400 (417)
T d1pv7a_ 394 LISVFTL 400 (417)
T ss_dssp HHHHHHS
T ss_pred HHHHHhh
Confidence 6655443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.45 E-value=3.8e-14 Score=136.80 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=129.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+. ++.+.+++..++.|++.+...+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----cccchhhHHHHHHHHHHHHHHHHH
Confidence 667788888999999999999999999999999999999999999999986 899999999999999999999999
Q ss_pred HHHHhhccccccccceehhh-hhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGIW-NAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
.+++.|.+|+++|+++.++. .....+|..++|.+.|++. ++||+..|++.+++.++..++..+.++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999975 5667899999999999988 57999999999998888877777777644
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.42 E-value=4.8e-13 Score=130.82 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=119.5
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY-GHLSLALNIALMFITGMFVNGP 419 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 419 (524)
+|++..+.|++.+...++..++.++.|+++||+|||+.+..+.++..++.++..... ...+.+..++..++.|++.+..
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 133 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhh
Confidence 599999999999999999999999999999999999999988888777766654321 1234456677778888888888
Q ss_pred hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
++.....+.+.++ ++.|+++.|+.+....+|..++|.+.+.+.+. +|+..+++.+.+.++..++.+.+
T Consensus 134 ~~~~~~~i~~~~~--------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 134 WPPCGRTMVHWWS--------QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHTTCT--------TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH--------hhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence 8888888888887 36789999999999999999999988877664 78888888877776655555443
No 5
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=36.67 E-value=1.3e+02 Score=26.37 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=25.0
Q ss_pred HHHhhccccc--cccceehhhhhhhhhHHHHHHHHHHHhh
Q 009816 191 AVVGNWFGKS--KRGLIMGIWNAHTSIGNITGSLVASALL 228 (524)
Q Consensus 191 ~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~l~~~l~ 228 (524)
..+.++++.+ ++.+.+-...++..++.+.+.++++.+.
T Consensus 144 ~~l~~~~~~~~~~~~r~l~~~GaaAglaa~F~aPlaG~lF 183 (444)
T d1otsa_ 144 RMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILF 183 (444)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhhhhHHhhHHHHHHHHHHHHhhccCCchhhhhh
Confidence 3445555422 2345566677788888899888888775
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.56 E-value=2e+02 Score=16.95 Aligned_cols=24 Identities=17% Similarity=0.725 Sum_probs=8.4
Q ss_pred CchhHHHHhHHHHHHHHHHHHHhc
Q 009816 231 GWGWSFVVPGLIIAFVGLIVFLFL 254 (524)
Q Consensus 231 gwr~~f~~~~~~~~~~~~~~~~~~ 254 (524)
+|.+.|+....+.++..+..+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 37 RWKWGYPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp -----CHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 345445444444444444444443
No 7
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=5.49 E-value=6.1e+02 Score=19.46 Aligned_cols=14 Identities=0% Similarity=-0.130 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHh
Q 009816 321 VAYTFLYWLPFYVS 334 (524)
Q Consensus 321 ~~~~~~~~~~~~~~ 334 (524)
.........|..+.
T Consensus 27 ~~~~~~~~~~~~~~ 40 (319)
T d3b60a2 27 LNAASDTFMLSLLK 40 (319)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444454443
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.28 E-value=2e+02 Score=13.56 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=4.7
Q ss_pred HHhcCCCCC
Q 009816 251 FLFLPVNPE 259 (524)
Q Consensus 251 ~~~~~~~~~ 259 (524)
..+.+|.|+
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 344566554
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.29 E-value=6e+02 Score=16.21 Aligned_cols=6 Identities=0% Similarity=0.539 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009816 477 VFTMLM 482 (524)
Q Consensus 477 ~~~~~~ 482 (524)
.++++.
T Consensus 32 v~~i~~ 37 (100)
T d3dtub2 32 ILVIIA 37 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 10
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.14 E-value=3.4e+02 Score=12.98 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHhhhhhhhc
Q 009816 111 LLGELDLAFLSIYAGGMFFSGH 132 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~ 132 (524)
+++|....-.+.+.+.-.+||+
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Done!