Query 009817
Match_columns 524
No_of_seqs 261 out of 2630
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 17:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 7.2E-77 1.6E-81 604.3 34.7 384 92-523 3-392 (393)
2 KOG1322 GDP-mannose pyrophosph 100.0 1.3E-75 2.8E-80 575.2 31.9 367 86-519 2-371 (371)
3 PLN02241 glucose-1-phosphate a 100.0 3.5E-66 7.6E-71 553.7 46.4 431 92-524 1-436 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 5.2E-64 1.1E-68 535.8 45.1 425 92-524 1-429 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 2.7E-58 5.9E-63 488.9 42.6 385 91-518 2-407 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 1.3E-57 2.9E-62 479.5 42.2 370 92-524 1-379 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 3.5E-56 7.6E-61 475.0 42.9 390 90-520 11-421 (425)
8 TIGR02091 glgC glucose-1-phosp 100.0 3.4E-51 7.4E-56 427.8 39.1 356 97-492 1-361 (361)
9 TIGR02092 glgD glucose-1-phosp 100.0 1.7E-51 3.6E-56 431.6 36.2 346 93-493 1-356 (369)
10 COG1208 GCD1 Nucleoside-diphos 100.0 6.6E-50 1.4E-54 416.7 38.2 351 94-523 1-356 (358)
11 TIGR01208 rmlA_long glucose-1- 100.0 4.5E-46 9.7E-51 388.3 39.3 328 96-493 1-340 (353)
12 PRK14355 glmU bifunctional N-a 100.0 2.5E-43 5.3E-48 380.1 36.8 387 92-524 1-430 (459)
13 PRK14352 glmU bifunctional N-a 100.0 1E-42 2.3E-47 377.3 36.8 386 92-524 2-432 (482)
14 COG1207 GlmU N-acetylglucosami 100.0 5.9E-43 1.3E-47 355.9 31.0 382 94-524 2-430 (460)
15 PRK14358 glmU bifunctional N-a 100.0 3.8E-42 8.2E-47 372.5 33.0 381 93-524 6-432 (481)
16 TIGR01173 glmU UDP-N-acetylglu 100.0 8.1E-42 1.7E-46 366.9 33.4 377 95-524 1-423 (451)
17 PRK09451 glmU bifunctional N-a 100.0 1.9E-41 4.2E-46 365.0 32.0 379 92-524 3-427 (456)
18 PRK14359 glmU bifunctional N-a 100.0 5.2E-41 1.1E-45 358.7 34.2 371 94-524 2-400 (430)
19 KOG1460 GDP-mannose pyrophosph 100.0 3.8E-42 8.3E-47 333.4 22.4 358 94-523 2-385 (407)
20 PRK14356 glmU bifunctional N-a 100.0 3.6E-40 7.9E-45 355.0 34.8 381 94-524 5-431 (456)
21 PRK14353 glmU bifunctional N-a 100.0 8.6E-40 1.9E-44 351.1 36.4 379 92-524 3-413 (446)
22 PRK14357 glmU bifunctional N-a 100.0 1.8E-39 3.9E-44 348.8 32.5 372 95-524 1-416 (448)
23 PRK14354 glmU bifunctional N-a 100.0 3.4E-39 7.3E-44 347.6 33.5 380 94-524 2-426 (458)
24 COG1209 RfbA dTDP-glucose pyro 100.0 1.6E-39 3.4E-44 315.2 21.8 234 95-373 1-237 (286)
25 PRK14360 glmU bifunctional N-a 100.0 6.2E-38 1.3E-42 337.0 34.6 378 95-524 2-423 (450)
26 TIGR01105 galF UTP-glucose-1-p 100.0 1.7E-38 3.6E-43 323.0 27.6 243 92-372 1-277 (297)
27 PF00483 NTP_transferase: Nucl 100.0 3.3E-38 7.2E-43 312.0 26.1 241 96-373 1-247 (248)
28 PRK10122 GalU regulator GalF; 100.0 2E-37 4.4E-42 315.5 27.4 243 92-372 1-277 (297)
29 KOG1462 Translation initiation 100.0 1.2E-37 2.7E-42 312.2 22.0 349 92-493 7-403 (433)
30 cd06428 M1P_guanylylT_A_like_N 100.0 5.4E-37 1.2E-41 306.2 26.3 235 97-371 1-257 (257)
31 KOG1461 Translation initiation 100.0 3.5E-36 7.6E-41 317.2 32.7 381 92-524 22-423 (673)
32 cd06425 M1P_guanylylT_B_like_N 100.0 1.5E-36 3.2E-41 298.5 27.1 232 95-372 1-233 (233)
33 PRK15480 glucose-1-phosphate t 100.0 5.1E-36 1.1E-40 304.1 27.2 235 92-372 1-241 (292)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.9E-35 4.1E-40 291.9 26.2 231 95-371 1-237 (240)
35 cd02541 UGPase_prokaryotic Pro 100.0 2.6E-35 5.7E-40 295.4 25.2 241 95-372 1-265 (267)
36 TIGR01207 rmlA glucose-1-phosp 100.0 3E-35 6.6E-40 297.9 25.5 231 96-372 1-237 (286)
37 TIGR02623 G1P_cyt_trans glucos 100.0 9.4E-35 2E-39 289.9 26.6 233 96-375 1-248 (254)
38 TIGR01099 galU UTP-glucose-1-p 100.0 3.9E-35 8.5E-40 292.9 23.6 239 95-367 1-260 (260)
39 PRK13389 UTP--glucose-1-phosph 100.0 4.2E-34 9.2E-39 291.6 27.4 244 92-372 6-280 (302)
40 cd06422 NTP_transferase_like_1 100.0 3.6E-34 7.8E-39 279.1 21.8 219 96-367 1-221 (221)
41 cd02524 G1P_cytidylyltransfera 100.0 2.1E-33 4.6E-38 279.7 26.8 242 97-374 1-248 (253)
42 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.6E-33 5.7E-38 275.3 26.6 232 95-373 1-235 (236)
43 cd06915 NTP_transferase_WcbM_l 100.0 1.2E-32 2.6E-37 267.1 23.6 223 97-368 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 2.2E-32 4.8E-37 264.4 24.0 217 97-359 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 1.4E-31 2.9E-36 260.2 24.3 219 97-368 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 4.6E-32 1E-36 263.4 19.6 249 92-375 2-273 (291)
47 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 1.7E-29 3.6E-34 247.7 23.2 222 97-364 1-230 (231)
48 cd02523 PC_cytidylyltransferas 100.0 1.4E-29 3.1E-34 248.0 21.7 222 97-368 1-229 (229)
49 cd04197 eIF-2B_epsilon_N The N 100.0 6.2E-30 1.4E-34 249.0 18.3 204 95-318 1-217 (217)
50 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.6E-29 5.6E-34 241.6 22.0 198 97-358 1-200 (200)
51 cd02509 GDP-M1P_Guanylyltransf 100.0 2.9E-27 6.2E-32 238.5 19.6 235 95-364 1-274 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 9.9E-26 2.2E-30 220.2 23.4 221 97-364 1-229 (229)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 3.4E-26 7.3E-31 222.8 16.4 204 95-318 1-216 (216)
54 TIGR01479 GMP_PMI mannose-1-ph 99.9 3E-24 6.5E-29 231.6 22.4 240 95-368 1-281 (468)
55 cd04198 eIF-2B_gamma_N The N-t 99.9 2.2E-24 4.8E-29 209.7 15.1 201 95-318 1-214 (214)
56 PRK05450 3-deoxy-manno-octulos 99.9 1.1E-22 2.4E-27 201.3 23.6 234 94-371 2-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 3.2E-22 7E-27 197.2 22.5 226 95-369 2-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 3.3E-22 7.2E-27 191.5 18.4 224 92-374 1-231 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 1.1E-20 2.3E-25 186.2 22.0 225 94-370 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.9 1.7E-20 3.8E-25 201.2 19.6 241 95-367 6-289 (478)
61 COG0836 {ManC} Mannose-1-phosp 99.8 3.2E-19 6.8E-24 177.7 19.0 245 95-369 2-283 (333)
62 COG4750 LicC CTP:phosphocholin 99.8 5.8E-18 1.3E-22 156.2 16.0 218 95-372 1-226 (231)
63 PLN02917 CMP-KDO synthetase 99.7 2.7E-16 5.9E-21 160.0 22.8 236 93-374 46-290 (293)
64 PRK00155 ispD 2-C-methyl-D-ery 99.6 4.8E-14 1E-18 138.1 19.0 218 93-373 2-224 (227)
65 TIGR00453 ispD 2-C-methyl-D-er 99.6 5.1E-14 1.1E-18 136.8 18.5 210 97-370 2-216 (217)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.6 1.3E-13 2.8E-18 136.4 20.6 229 97-364 2-237 (238)
67 cd02516 CDP-ME_synthetase CDP- 99.6 9.9E-14 2.1E-18 134.6 17.2 212 96-366 2-217 (218)
68 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 9.8E-15 2.1E-19 143.5 9.8 38 331-375 29-66 (231)
69 cd02513 CMP-NeuAc_Synthase CMP 99.5 4.4E-13 9.6E-18 130.3 19.6 214 95-370 2-222 (223)
70 PRK09382 ispDF bifunctional 2- 99.5 4.3E-13 9.4E-18 140.8 20.1 208 92-373 3-214 (378)
71 TIGR00454 conserved hypothetic 99.5 9E-14 1.9E-18 132.1 12.9 125 95-250 1-127 (183)
72 cd04651 LbH_G1P_AT_C Glucose-1 99.5 1.2E-13 2.5E-18 119.3 12.4 103 396-518 1-104 (104)
73 TIGR03310 matur_ygfJ molybdenu 99.5 3.7E-13 8E-18 127.4 16.6 119 97-244 2-122 (188)
74 PF12804 NTP_transf_3: MobA-li 99.5 1.1E-13 2.3E-18 127.8 12.5 121 97-249 1-123 (160)
75 PRK13385 2-C-methyl-D-erythrit 99.5 1E-12 2.2E-17 129.1 18.7 218 95-373 3-225 (230)
76 COG2266 GTP:adenosylcobinamide 99.4 3.9E-12 8.5E-17 117.1 16.7 110 95-238 1-112 (177)
77 cd04182 GT_2_like_f GT_2_like_ 99.4 9.8E-13 2.1E-17 123.7 12.8 120 95-243 1-122 (186)
78 cd02503 MobA MobA catalyzes th 99.4 4.3E-12 9.4E-17 119.6 15.9 113 95-244 1-115 (181)
79 PRK00317 mobA molybdopterin-gu 99.4 1.5E-11 3.3E-16 117.4 18.4 115 92-240 1-117 (193)
80 TIGR02665 molyb_mobA molybdopt 99.4 3.5E-11 7.5E-16 113.9 17.4 117 95-243 1-119 (186)
81 TIGR03584 PseF pseudaminic aci 99.4 1.1E-10 2.3E-15 114.5 21.2 215 97-371 2-220 (222)
82 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 5.6E-12 1.2E-16 120.6 11.8 139 383-524 26-177 (193)
83 PLN02728 2-C-methyl-D-erythrit 99.3 9.6E-11 2.1E-15 116.8 20.7 220 91-373 21-246 (252)
84 COG2068 Uncharacterized MobA-r 99.3 9E-11 2E-15 111.0 17.9 121 92-240 3-125 (199)
85 cd05636 LbH_G1P_TT_C_like Puta 99.3 2.1E-11 4.5E-16 113.6 12.9 91 385-494 12-106 (163)
86 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 2.5E-11 5.4E-16 99.6 10.2 78 409-522 2-80 (81)
87 TIGR01853 lipid_A_lpxD UDP-3-O 99.3 6.7E-11 1.5E-15 122.1 15.6 47 354-400 66-113 (324)
88 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 9.1E-11 2E-15 118.6 15.8 59 465-524 225-287 (338)
89 PRK00560 molybdopterin-guanine 99.3 2.7E-10 5.8E-15 109.5 18.1 184 90-372 4-192 (196)
90 COG1212 KdsB CMP-2-keto-3-deox 99.3 5.6E-10 1.2E-14 106.5 19.6 235 94-373 3-244 (247)
91 PRK02726 molybdopterin-guanine 99.3 3.5E-10 7.7E-15 108.9 18.5 112 93-238 6-119 (200)
92 TIGR02287 PaaY phenylacetic ac 99.2 6.4E-11 1.4E-15 113.3 12.0 109 387-522 11-129 (192)
93 cd04745 LbH_paaY_like paaY-lik 99.2 1.4E-10 3E-15 107.3 12.2 95 406-523 18-122 (155)
94 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 2.4E-10 5.2E-15 119.1 15.5 43 358-400 77-122 (343)
95 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 9.3E-11 2E-15 96.2 9.6 77 393-488 2-80 (81)
96 COG0663 PaaY Carbonic anhydras 99.2 1.4E-10 3E-15 107.6 11.7 92 387-493 14-107 (176)
97 PRK13627 carnitine operon prot 99.2 1.7E-10 3.7E-15 110.7 12.9 87 389-493 15-106 (196)
98 PRK14489 putative bifunctional 99.2 8.3E-10 1.8E-14 116.1 18.4 121 92-244 3-125 (366)
99 PLN02296 carbonate dehydratase 99.2 1.7E-10 3.7E-15 115.7 12.4 126 382-523 50-180 (269)
100 cd03356 LbH_G1P_AT_C_like Left 99.2 1.7E-10 3.8E-15 93.9 10.1 77 409-520 2-79 (79)
101 cd03353 LbH_GlmU_C N-acetyl-gl 99.2 1.9E-10 4E-15 110.0 11.7 98 390-490 15-117 (193)
102 PF01128 IspD: 2-C-methyl-D-er 99.2 3.6E-09 7.9E-14 103.3 20.2 215 95-372 1-220 (221)
103 COG1044 LpxD UDP-3-O-[3-hydrox 99.2 2.2E-10 4.7E-15 115.9 11.8 49 475-524 202-251 (338)
104 PRK05289 UDP-N-acetylglucosami 99.1 2.8E-10 6.1E-15 114.2 12.2 143 380-524 4-174 (262)
105 TIGR03202 pucB xanthine dehydr 99.1 6.3E-10 1.4E-14 106.0 13.4 123 96-242 2-126 (190)
106 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.1 2.5E-10 5.5E-15 114.0 10.8 60 465-524 103-171 (254)
107 PRK14490 putative bifunctional 99.1 2.1E-09 4.6E-14 113.2 17.7 114 88-236 168-283 (369)
108 cd05787 LbH_eIF2B_epsilon eIF- 99.1 4.5E-10 9.8E-15 91.1 9.5 77 409-520 2-79 (79)
109 PLN02472 uncharacterized prote 99.1 3.3E-10 7.2E-15 112.2 10.4 100 385-493 60-161 (246)
110 cd02518 GT2_SpsF SpsF is a gly 99.1 4.8E-09 1E-13 103.1 18.1 115 97-245 2-121 (233)
111 cd04646 LbH_Dynactin_6 Dynacti 99.1 1.5E-09 3.1E-14 101.5 13.6 107 406-524 17-128 (164)
112 cd04651 LbH_G1P_AT_C Glucose-1 99.1 6.4E-10 1.4E-14 95.9 10.0 75 407-523 2-76 (104)
113 PRK12461 UDP-N-acetylglucosami 99.1 1.1E-09 2.3E-14 109.5 12.3 140 381-523 2-169 (255)
114 TIGR03308 phn_thr-fam phosphon 99.1 1.1E-09 2.3E-14 106.0 11.7 59 380-439 10-70 (204)
115 PRK14358 glmU bifunctional N-a 99.1 3.7E-10 8E-15 123.0 9.5 84 403-494 319-412 (481)
116 TIGR01173 glmU UDP-N-acetylglu 99.1 4.1E-10 9E-15 121.2 9.6 50 402-451 309-360 (451)
117 cd04193 UDPGlcNAc_PPase UDPGlc 99.1 6.7E-09 1.5E-13 107.1 17.9 212 93-324 14-257 (323)
118 cd03356 LbH_G1P_AT_C_like Left 99.1 1.1E-09 2.3E-14 89.2 9.6 75 393-486 2-79 (79)
119 COG1211 IspD 4-diphosphocytidy 99.1 2E-08 4.4E-13 98.0 20.0 222 93-373 3-228 (230)
120 TIGR01852 lipid_A_lpxA acyl-[a 99.1 1.3E-09 2.7E-14 109.0 12.0 57 465-524 102-170 (254)
121 cd04180 UGPase_euk_like Eukary 99.0 1.5E-10 3.2E-15 116.4 4.9 208 95-323 1-241 (266)
122 cd05636 LbH_G1P_TT_C_like Puta 99.0 1.4E-09 3.1E-14 101.2 11.2 98 392-524 37-162 (163)
123 PRK14356 glmU bifunctional N-a 99.0 8.8E-10 1.9E-14 119.1 10.6 97 391-490 270-371 (456)
124 cd04650 LbH_FBP Ferripyochelin 99.0 3E-09 6.5E-14 98.3 12.1 69 406-493 18-96 (154)
125 KOG1461 Translation initiation 99.0 4.8E-10 1E-14 120.2 7.5 91 384-493 327-420 (673)
126 cd05824 LbH_M1P_guanylylT_C Ma 99.0 2.2E-09 4.9E-14 87.8 9.8 64 407-493 6-69 (80)
127 COG1207 GlmU N-acetylglucosami 99.0 1.2E-09 2.5E-14 113.1 9.1 109 406-523 274-386 (460)
128 PRK09451 glmU bifunctional N-a 99.0 8E-10 1.7E-14 119.5 8.3 106 402-519 313-428 (456)
129 TIGR01853 lipid_A_lpxD UDP-3-O 99.0 2.1E-09 4.5E-14 111.1 10.8 59 465-523 218-285 (324)
130 COG0746 MobA Molybdopterin-gua 99.0 2.1E-08 4.6E-13 95.9 16.4 113 92-241 2-116 (192)
131 TIGR01852 lipid_A_lpxA acyl-[a 99.0 4.5E-09 9.7E-14 105.1 12.1 16 423-438 77-92 (254)
132 cd00710 LbH_gamma_CA Gamma car 99.0 6E-09 1.3E-13 97.5 12.2 27 465-491 89-115 (167)
133 PRK14357 glmU bifunctional N-a 99.0 2.1E-09 4.6E-14 115.8 10.4 73 406-482 273-348 (448)
134 cd04645 LbH_gamma_CA_like Gamm 99.0 8.2E-09 1.8E-13 95.1 12.4 69 406-493 17-95 (153)
135 cd03358 LbH_WxcM_N_like WcxM-l 98.9 4.1E-09 8.9E-14 92.4 9.3 40 406-445 16-57 (119)
136 PRK14353 glmU bifunctional N-a 98.9 4.3E-09 9.3E-14 113.4 10.9 108 383-493 279-398 (446)
137 PRK11830 dapD 2,3,4,5-tetrahyd 98.9 5.9E-09 1.3E-13 104.4 10.7 23 423-445 145-167 (272)
138 KOG1462 Translation initiation 98.9 2.6E-09 5.7E-14 108.8 8.2 90 385-493 329-420 (433)
139 cd03352 LbH_LpxD UDP-3-O-acyl- 98.9 9.5E-09 2.1E-13 99.1 11.8 57 381-437 10-70 (205)
140 PRK05289 UDP-N-acetylglucosami 98.9 7.7E-09 1.7E-13 103.9 11.2 103 385-491 3-121 (262)
141 PRK00892 lpxD UDP-3-O-[3-hydro 98.9 6.4E-09 1.4E-13 108.5 10.8 59 465-523 226-293 (343)
142 TIGR00965 dapD 2,3,4,5-tetrahy 98.9 8.3E-09 1.8E-13 102.5 10.9 54 387-444 109-163 (269)
143 PRK14500 putative bifunctional 98.9 4.2E-08 9.1E-13 102.1 16.3 109 94-237 160-270 (346)
144 cd03360 LbH_AT_putative Putati 98.9 1E-08 2.2E-13 96.7 10.7 28 465-492 139-167 (197)
145 cd05824 LbH_M1P_guanylylT_C Ma 98.9 1.3E-08 2.8E-13 83.3 9.9 74 394-486 3-80 (80)
146 cd04745 LbH_paaY_like paaY-lik 98.9 1.7E-08 3.8E-13 93.2 11.9 95 380-493 8-114 (155)
147 cd05787 LbH_eIF2B_epsilon eIF- 98.9 1.1E-08 2.3E-13 82.9 9.2 75 393-486 2-79 (79)
148 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.9 1.3E-08 2.8E-13 101.8 11.6 132 383-523 4-152 (254)
149 PRK14354 glmU bifunctional N-a 98.9 8.4E-09 1.8E-13 111.5 10.9 122 392-520 302-428 (458)
150 TIGR03308 phn_thr-fam phosphon 98.9 1.8E-08 4E-13 97.3 11.4 44 402-445 15-59 (204)
151 PRK12461 UDP-N-acetylglucosami 98.8 1.9E-08 4E-13 100.6 11.4 58 387-444 2-63 (255)
152 cd04646 LbH_Dynactin_6 Dynacti 98.8 2.1E-08 4.6E-13 93.6 11.1 94 381-493 8-119 (164)
153 PRK11830 dapD 2,3,4,5-tetrahyd 98.8 2E-08 4.4E-13 100.5 11.6 29 465-493 183-212 (272)
154 TIGR03570 NeuD_NnaD sugar O-ac 98.8 4.8E-08 1E-12 93.0 13.8 20 354-373 62-81 (201)
155 PRK14360 glmU bifunctional N-a 98.8 1.2E-08 2.7E-13 109.9 10.9 67 407-493 281-349 (450)
156 cd00710 LbH_gamma_CA Gamma car 98.8 2.6E-08 5.7E-13 93.2 10.8 100 406-523 20-130 (167)
157 TIGR02287 PaaY phenylacetic ac 98.8 3E-08 6.4E-13 94.9 10.8 95 380-493 16-122 (192)
158 PRK14352 glmU bifunctional N-a 98.8 1.9E-08 4.2E-13 109.6 10.8 57 392-449 273-332 (482)
159 cd05635 LbH_unknown Uncharacte 98.8 3.2E-08 7E-13 84.9 9.6 67 406-493 29-97 (101)
160 cd03359 LbH_Dynactin_5 Dynacti 98.8 5E-08 1.1E-12 90.8 11.6 107 406-523 27-133 (161)
161 PLN02474 UTP--glucose-1-phosph 98.8 3E-06 6.6E-11 90.8 26.6 346 92-482 77-467 (469)
162 PRK14355 glmU bifunctional N-a 98.8 2.9E-08 6.4E-13 107.5 11.3 64 406-492 274-337 (459)
163 cd03350 LbH_THP_succinylT 2,3, 98.8 5.1E-08 1.1E-12 88.4 11.0 33 406-438 31-65 (139)
164 TIGR00965 dapD 2,3,4,5-tetrahy 98.8 4.1E-08 9E-13 97.6 11.0 45 390-438 100-145 (269)
165 COG1083 NeuA CMP-N-acetylneura 98.8 2.9E-07 6.4E-12 87.5 15.6 219 93-373 2-224 (228)
166 COG1043 LpxA Acyl-[acyl carrie 98.7 5.4E-08 1.2E-12 93.8 10.3 141 380-522 5-173 (260)
167 cd03352 LbH_LpxD UDP-3-O-acyl- 98.7 9.6E-08 2.1E-12 92.1 12.1 63 382-444 5-71 (205)
168 PLN02296 carbonate dehydratase 98.7 7.4E-08 1.6E-12 96.7 11.5 110 380-517 60-187 (269)
169 cd04650 LbH_FBP Ferripyochelin 98.7 1.2E-07 2.5E-12 87.7 11.9 96 379-493 7-114 (154)
170 cd03350 LbH_THP_succinylT 2,3, 98.7 1E-07 2.3E-12 86.4 11.2 58 387-444 4-65 (139)
171 PTZ00339 UDP-N-acetylglucosami 98.7 8.5E-07 1.8E-11 95.7 20.0 210 93-323 105-351 (482)
172 cd04645 LbH_gamma_CA_like Gamm 98.7 9.3E-08 2E-12 88.1 10.8 94 381-493 8-113 (153)
173 PRK13627 carnitine operon prot 98.7 8E-08 1.7E-12 92.3 9.8 68 407-493 56-124 (196)
174 PRK05293 glgC glucose-1-phosph 98.7 4.9E-08 1.1E-12 103.0 9.0 90 381-491 285-380 (380)
175 COG0663 PaaY Carbonic anhydras 98.7 7E-08 1.5E-12 89.7 7.9 95 380-493 19-125 (176)
176 PLN02472 uncharacterized prote 98.6 2.4E-07 5.1E-12 92.0 11.6 68 407-493 99-179 (246)
177 PRK14359 glmU bifunctional N-a 98.6 1.5E-07 3.2E-12 100.9 11.0 61 406-486 265-326 (430)
178 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.6 1.8E-07 3.9E-12 92.1 10.3 53 387-439 95-151 (231)
179 COG0448 GlgC ADP-glucose pyrop 98.6 1.2E-07 2.5E-12 98.2 8.8 69 418-524 292-360 (393)
180 cd03360 LbH_AT_putative Putati 98.6 6.3E-07 1.4E-11 84.4 13.3 7 355-361 60-66 (197)
181 TIGR02091 glgC glucose-1-phosp 98.6 2E-07 4.3E-12 97.7 9.8 55 391-445 295-350 (361)
182 KOG1460 GDP-mannose pyrophosph 98.6 1.3E-07 2.8E-12 93.5 7.6 101 379-484 289-397 (407)
183 PLN02694 serine O-acetyltransf 98.6 2E-07 4.4E-12 93.7 8.9 80 407-492 167-247 (294)
184 TIGR02092 glgD glucose-1-phosp 98.6 1.9E-07 4.2E-12 98.2 9.3 54 391-445 290-344 (369)
185 PRK00725 glgC glucose-1-phosph 98.5 1.7E-07 3.6E-12 100.7 8.2 56 418-493 323-378 (425)
186 cd05635 LbH_unknown Uncharacte 98.5 9.1E-07 2E-11 75.9 10.8 66 422-524 29-94 (101)
187 cd03359 LbH_Dynactin_5 Dynacti 98.5 6.8E-07 1.5E-11 83.2 10.6 86 388-493 25-125 (161)
188 PRK00844 glgC glucose-1-phosph 98.5 4E-07 8.6E-12 97.2 9.5 68 389-475 314-382 (407)
189 PRK02862 glgC glucose-1-phosph 98.5 3.7E-07 8E-12 98.2 9.0 66 408-493 294-378 (429)
190 TIGR03570 NeuD_NnaD sugar O-ac 98.5 8.8E-07 1.9E-11 84.3 10.4 68 407-492 118-188 (201)
191 PRK11132 cysE serine acetyltra 98.5 1.5E-06 3.3E-11 87.2 11.9 81 406-492 147-228 (273)
192 PRK09527 lacA galactoside O-ac 98.4 1.5E-06 3.2E-11 83.9 11.1 100 387-494 58-162 (203)
193 PRK10502 putative acyl transfe 98.4 1.3E-06 2.7E-11 83.1 9.9 97 387-494 54-155 (182)
194 PRK09677 putative lipopolysacc 98.4 1.9E-06 4.2E-11 82.5 11.2 84 406-494 65-161 (192)
195 cd04649 LbH_THP_succinylT_puta 98.4 2.8E-06 6E-11 77.1 11.4 95 387-493 10-107 (147)
196 TIGR01172 cysE serine O-acetyl 98.4 1.3E-06 2.8E-11 81.5 9.3 28 465-492 120-148 (162)
197 TIGR03536 DapD_gpp 2,3,4,5-tet 98.4 3.2E-06 7E-11 85.2 12.6 15 423-437 225-239 (341)
198 cd00208 LbetaH Left-handed par 98.4 1.6E-06 3.5E-11 69.4 8.6 69 408-492 2-73 (78)
199 PLN02357 serine acetyltransfer 98.4 1.1E-06 2.4E-11 90.7 9.2 67 423-493 247-314 (360)
200 cd03357 LbH_MAT_GAT Maltose O- 98.4 2.5E-06 5.5E-11 79.9 10.9 99 388-494 46-149 (169)
201 cd04647 LbH_MAT_like Maltose O 98.4 1.7E-06 3.8E-11 74.2 9.0 32 407-440 8-39 (109)
202 TIGR01208 rmlA_long glucose-1- 98.4 1.4E-06 3E-11 91.1 9.6 27 419-445 301-328 (353)
203 PF07959 Fucokinase: L-fucokin 98.4 2.8E-06 6.1E-11 90.7 11.8 236 215-494 54-320 (414)
204 COG1043 LpxA Acyl-[acyl carrie 98.4 2.5E-06 5.4E-11 82.4 10.1 86 384-474 3-91 (260)
205 TIGR03535 DapD_actino 2,3,4,5- 98.3 4.4E-06 9.5E-11 83.9 12.0 30 461-492 222-252 (319)
206 PRK10092 maltose O-acetyltrans 98.3 3.5E-06 7.7E-11 80.1 10.9 97 390-494 59-160 (183)
207 cd00208 LbetaH Left-handed par 98.3 3E-06 6.6E-11 67.8 8.9 68 423-524 1-77 (78)
208 PRK10502 putative acyl transfe 98.3 4.3E-06 9.4E-11 79.4 11.0 17 422-438 71-87 (182)
209 PRK09527 lacA galactoside O-ac 98.3 3.9E-06 8.4E-11 81.0 10.6 18 476-493 132-149 (203)
210 COG2171 DapD Tetrahydrodipicol 98.3 2E-06 4.2E-11 84.7 8.2 73 406-493 138-212 (271)
211 cd03354 LbH_SAT Serine acetylt 98.3 5.5E-06 1.2E-10 70.7 9.1 27 465-491 61-88 (101)
212 COG2171 DapD Tetrahydrodipicol 98.3 2E-06 4.3E-11 84.6 7.1 102 390-523 108-220 (271)
213 PLN02241 glucose-1-phosphate a 98.2 3.5E-06 7.7E-11 90.8 9.7 92 411-522 304-421 (436)
214 cd03357 LbH_MAT_GAT Maltose O- 98.2 8.5E-06 1.8E-10 76.4 9.5 29 465-493 125-154 (169)
215 cd03358 LbH_WxcM_N_like WcxM-l 98.2 9.5E-06 2.1E-10 70.9 9.2 39 407-445 11-51 (119)
216 PLN02694 serine O-acetyltransf 98.1 9.8E-06 2.1E-10 81.6 9.4 14 387-400 163-176 (294)
217 cd00897 UGPase_euk Eukaryotic 98.1 0.00021 4.6E-09 72.9 19.0 209 93-324 2-234 (300)
218 cd04649 LbH_THP_succinylT_puta 98.1 3.1E-05 6.7E-10 70.3 11.3 28 406-437 13-40 (147)
219 COG1208 GCD1 Nucleoside-diphos 98.1 1.1E-05 2.3E-10 84.8 9.6 61 385-445 256-319 (358)
220 PRK13412 fkp bifunctional fuco 98.1 3E-05 6.5E-10 89.6 13.8 217 216-479 154-393 (974)
221 PRK11132 cysE serine acetyltra 98.1 1.3E-05 2.8E-10 80.6 9.5 11 389-399 146-156 (273)
222 cd05825 LbH_wcaF_like wcaF-lik 98.1 2.7E-05 5.9E-10 67.2 10.3 78 406-494 9-87 (107)
223 TIGR01172 cysE serine O-acetyl 98.1 1.5E-05 3.2E-10 74.3 9.2 29 465-493 114-143 (162)
224 PF02348 CTP_transf_3: Cytidyl 98.1 4.2E-05 9.1E-10 74.1 12.7 177 96-316 1-185 (217)
225 TIGR03536 DapD_gpp 2,3,4,5-tet 98.1 2.1E-05 4.6E-10 79.5 10.5 17 425-441 221-237 (341)
226 PRK10191 putative acyl transfe 98.1 1.6E-05 3.5E-10 72.7 9.0 29 465-493 99-128 (146)
227 PLN02357 serine acetyltransfer 98.1 1.8E-05 4E-10 81.8 10.2 91 386-494 228-332 (360)
228 PLN02739 serine acetyltransfer 98.1 1.2E-05 2.5E-10 82.7 8.4 33 457-492 259-292 (355)
229 PLN02830 UDP-sugar pyrophospho 98.0 0.0039 8.5E-08 69.5 28.2 218 92-324 126-384 (615)
230 PLN02739 serine acetyltransfer 98.0 2.1E-05 4.6E-10 80.8 9.6 30 465-494 258-288 (355)
231 PF01704 UDPGP: UTP--glucose-1 98.0 0.0002 4.4E-09 76.4 17.4 215 92-324 54-289 (420)
232 KOG3121 Dynactin, subunit p25 98.0 9.9E-06 2.2E-10 72.0 6.1 35 406-441 39-73 (184)
233 PLN02435 probable UDP-N-acetyl 98.0 0.00015 3.3E-09 78.3 16.5 212 93-323 115-364 (493)
234 COG1045 CysE Serine acetyltran 98.0 3.8E-05 8.2E-10 72.5 9.8 67 423-493 88-155 (194)
235 cd05825 LbH_wcaF_like wcaF-lik 98.0 3.5E-05 7.5E-10 66.6 8.7 19 475-493 56-74 (107)
236 PRK09677 putative lipopolysacc 98.0 6.5E-05 1.4E-09 72.0 11.4 99 392-524 31-163 (192)
237 cd04647 LbH_MAT_like Maltose O 98.0 3.3E-05 7.3E-10 66.2 8.2 28 465-492 59-87 (109)
238 PRK10191 putative acyl transfe 98.0 2.7E-05 5.8E-10 71.3 7.8 30 465-494 93-123 (146)
239 TIGR03535 DapD_actino 2,3,4,5- 97.9 5.7E-05 1.2E-09 76.0 10.1 28 465-493 232-259 (319)
240 cd03354 LbH_SAT Serine acetylt 97.9 5.6E-05 1.2E-09 64.4 8.7 61 407-493 9-72 (101)
241 PRK10092 maltose O-acetyltrans 97.9 5.5E-05 1.2E-09 71.9 9.3 28 465-492 136-164 (183)
242 cd03349 LbH_XAT Xenobiotic acy 97.8 7.8E-05 1.7E-09 68.2 8.7 19 422-440 21-39 (145)
243 cd06424 UGGPase UGGPase cataly 97.8 0.00066 1.4E-08 69.7 15.9 212 96-325 2-254 (315)
244 COG1861 SpsF Spore coat polysa 97.8 0.00038 8.3E-09 66.9 12.3 117 93-244 2-124 (241)
245 PRK00576 molybdopterin-guanine 97.7 0.0012 2.5E-08 62.2 15.0 97 115-240 3-103 (178)
246 COG0110 WbbJ Acetyltransferase 97.7 0.00016 3.4E-09 68.6 8.9 84 406-494 67-155 (190)
247 KOG1322 GDP-mannose pyrophosph 97.7 2.6E-05 5.6E-10 78.7 3.3 59 422-493 276-334 (371)
248 COG4284 UDP-glucose pyrophosph 97.6 0.0031 6.6E-08 67.2 17.6 212 92-320 103-336 (472)
249 TIGR02353 NRPS_term_dom non-ri 97.6 0.0002 4.3E-09 81.5 9.4 76 406-494 112-191 (695)
250 TIGR02353 NRPS_term_dom non-ri 97.5 0.00031 6.8E-09 79.9 9.4 89 406-523 597-689 (695)
251 COG1045 CysE Serine acetyltran 97.5 0.00035 7.7E-09 66.0 7.8 76 406-524 73-152 (194)
252 KOG4750 Serine O-acetyltransfe 97.3 0.00059 1.3E-08 65.5 6.6 31 463-494 200-231 (269)
253 COG4801 Predicted acyltransfer 97.2 0.0013 2.8E-08 63.4 8.0 75 395-493 8-86 (277)
254 KOG3121 Dynactin, subunit p25 97.2 0.00042 9.1E-09 61.9 4.0 21 423-443 85-105 (184)
255 KOG4750 Serine O-acetyltransfe 97.1 0.00087 1.9E-08 64.4 5.8 37 407-445 155-191 (269)
256 cd03349 LbH_XAT Xenobiotic acy 97.0 0.0035 7.6E-08 57.3 9.1 30 464-493 73-103 (145)
257 KOG4042 Dynactin subunit p27/W 96.9 0.0023 5E-08 57.7 6.5 51 389-439 7-64 (190)
258 KOG2638 UDP-glucose pyrophosph 96.8 0.13 2.8E-06 53.9 19.1 355 92-486 101-497 (498)
259 COG0110 WbbJ Acetyltransferase 96.7 0.0065 1.4E-07 57.5 8.1 28 465-492 131-159 (190)
260 PF00132 Hexapep: Bacterial tr 96.5 0.002 4.4E-08 44.0 2.5 26 465-490 8-34 (36)
261 COG4801 Predicted acyltransfer 96.5 0.0093 2E-07 57.7 7.6 74 402-493 29-104 (277)
262 PF00132 Hexapep: Bacterial tr 96.3 0.0037 7.9E-08 42.7 2.8 32 407-438 2-35 (36)
263 PF14602 Hexapep_2: Hexapeptid 96.0 0.0086 1.9E-07 40.7 3.3 30 407-437 2-32 (34)
264 PF14602 Hexapep_2: Hexapeptid 95.7 0.0085 1.9E-07 40.7 2.3 9 465-473 2-10 (34)
265 cd00761 Glyco_tranf_GTA_type G 95.3 0.47 1E-05 41.0 13.0 99 119-238 2-103 (156)
266 TIGR03552 F420_cofC 2-phospho- 94.5 0.17 3.7E-06 48.1 8.5 85 127-238 31-117 (195)
267 KOG4042 Dynactin subunit p27/W 94.3 0.045 9.8E-07 49.5 3.6 37 385-421 21-63 (190)
268 PF00535 Glycos_transf_2: Glyc 92.2 3 6.5E-05 36.8 12.3 110 119-249 3-115 (169)
269 KOG2388 UDP-N-acetylglucosamin 92.0 0.67 1.4E-05 49.8 8.7 126 93-225 96-248 (477)
270 PF07959 Fucokinase: L-fucokin 89.0 0.86 1.9E-05 49.0 6.5 98 340-444 223-323 (414)
271 COG1920 Predicted nucleotidylt 84.6 8 0.00017 36.9 9.5 106 95-238 1-112 (210)
272 cd02525 Succinoglycan_BP_ExoA 83.2 21 0.00045 34.2 12.5 105 119-245 5-114 (249)
273 PRK13412 fkp bifunctional fuco 82.5 1.7 3.7E-05 51.2 5.1 41 435-494 332-373 (974)
274 cd04179 DPM_DPG-synthase_like 82.4 19 0.00042 32.7 11.4 108 120-248 3-115 (185)
275 cd04186 GT_2_like_c Subfamily 79.3 39 0.00085 29.7 12.0 99 119-241 2-103 (166)
276 cd04188 DPG_synthase DPG_synth 77.3 42 0.00092 31.5 12.2 109 120-248 3-118 (211)
277 cd06423 CESA_like CESA_like is 77.2 40 0.00088 29.3 11.4 101 119-239 2-105 (180)
278 cd06442 DPM1_like DPM1_like re 75.3 53 0.0011 30.9 12.3 108 119-247 2-113 (224)
279 cd06439 CESA_like_1 CESA_like_ 74.7 64 0.0014 31.1 13.0 98 118-238 33-135 (251)
280 cd06434 GT2_HAS Hyaluronan syn 74.7 50 0.0011 31.4 12.1 97 119-238 5-103 (235)
281 cd06433 GT_2_WfgS_like WfgS an 71.1 65 0.0014 29.3 11.6 96 120-239 4-102 (202)
282 cd04184 GT2_RfbC_Mx_like Myxoc 70.8 70 0.0015 29.4 11.8 104 119-243 6-115 (202)
283 PRK10073 putative glycosyl tra 70.8 51 0.0011 34.1 11.7 107 119-247 11-120 (328)
284 cd06427 CESA_like_2 CESA_like_ 70.3 72 0.0016 30.8 12.2 110 119-248 6-120 (241)
285 cd02510 pp-GalNAc-T pp-GalNAc- 69.2 77 0.0017 31.8 12.5 105 119-242 3-113 (299)
286 cd04195 GT2_AmsE_like GT2_AmsE 68.8 96 0.0021 28.5 12.3 99 119-239 3-107 (201)
287 PLN02726 dolichyl-phosphate be 68.8 64 0.0014 31.3 11.5 49 193-247 79-128 (243)
288 cd04192 GT_2_like_e Subfamily 67.1 82 0.0018 29.5 11.6 106 119-242 2-112 (229)
289 cd04187 DPM1_like_bac Bacteria 63.8 89 0.0019 28.4 10.8 105 120-246 3-113 (181)
290 PF01983 CofC: Guanylyl transf 59.4 16 0.00035 35.7 5.0 104 95-237 1-113 (217)
291 cd06438 EpsO_like EpsO protein 58.2 1.5E+02 0.0032 27.1 13.4 106 119-244 2-112 (183)
292 PRK14583 hmsR N-glycosyltransf 58.2 1E+02 0.0022 33.3 11.5 100 119-239 80-182 (444)
293 cd06435 CESA_NdvC_like NdvC_li 56.7 1.2E+02 0.0025 28.9 10.7 102 119-238 3-110 (236)
294 PRK10018 putative glycosyl tra 53.8 2.5E+02 0.0054 28.4 12.8 97 120-239 11-112 (279)
295 cd04185 GT_2_like_b Subfamily 53.3 1.9E+02 0.004 26.7 11.6 100 120-238 3-105 (202)
296 TIGR03469 HonB hopene-associat 52.8 2.5E+02 0.0054 29.6 13.2 112 123-244 49-165 (384)
297 cd02520 Glucosylceramide_synth 51.7 2E+02 0.0043 26.6 11.7 103 119-237 6-111 (196)
298 PRK11204 N-glycosyltransferase 50.2 2.2E+02 0.0047 30.1 12.4 92 127-239 67-161 (420)
299 PF13641 Glyco_tranf_2_3: Glyc 49.1 70 0.0015 30.2 7.7 105 119-242 6-116 (228)
300 cd04196 GT_2_like_d Subfamily 48.9 2E+02 0.0043 26.5 10.6 98 119-236 3-103 (214)
301 TIGR03111 glyc2_xrt_Gpos1 puta 46.8 2.8E+02 0.0061 29.8 12.6 98 121-239 56-158 (439)
302 TIGR03472 HpnI hopanoid biosyn 44.5 2.5E+02 0.0054 29.4 11.6 104 119-238 46-152 (373)
303 KOG2978 Dolichol-phosphate man 41.3 3.4E+02 0.0073 26.2 11.0 104 127-252 19-128 (238)
304 cd06421 CESA_CelA_like CESA_Ce 41.1 3.1E+02 0.0066 25.7 12.3 100 119-239 6-111 (234)
305 TIGR01556 rhamnosyltran L-rham 41.1 3.6E+02 0.0079 26.5 11.8 90 128-240 9-101 (281)
306 cd02511 Beta4Glucosyltransfera 40.1 3.4E+02 0.0073 25.9 11.2 92 119-238 5-97 (229)
307 cd06420 GT2_Chondriotin_Pol_N 39.8 2.8E+02 0.006 24.8 10.9 100 119-237 2-104 (182)
308 cd02522 GT_2_like_a GT_2_like_ 39.5 3.1E+02 0.0068 25.4 12.1 94 119-240 4-100 (221)
309 PTZ00260 dolichyl-phosphate be 39.4 4.1E+02 0.0088 27.5 12.0 50 193-248 148-201 (333)
310 PF04519 Bactofilin: Polymer-f 37.6 2.3E+02 0.005 23.6 8.2 16 428-443 36-51 (101)
311 PRK11498 bcsA cellulose syntha 36.6 3.5E+02 0.0076 32.1 11.9 104 119-248 265-374 (852)
312 PRK00923 sirohydrochlorin coba 31.5 68 0.0015 28.0 4.1 26 124-150 44-69 (126)
313 COG1664 CcmA Integral membrane 29.9 2.8E+02 0.006 25.4 7.8 29 465-493 91-119 (146)
314 COG1215 Glycosyltransferases, 29.3 4.5E+02 0.0099 27.5 10.8 106 118-242 58-167 (439)
315 PRK13915 putative glucosyl-3-p 28.7 4.6E+02 0.01 26.8 10.3 50 193-248 101-153 (306)
316 TIGR02990 ectoine_eutA ectoine 28.2 4.5E+02 0.0099 26.0 9.7 35 129-165 108-142 (239)
317 cd03409 Chelatase_Class_II Cla 27.0 1E+02 0.0022 25.4 4.2 24 127-150 45-68 (101)
318 cd06913 beta3GnTL1_like Beta 1 26.5 5.3E+02 0.012 24.0 11.9 108 119-241 2-113 (219)
319 PRK10063 putative glycosyl tra 25.7 6.4E+02 0.014 24.7 12.9 97 121-240 8-109 (248)
320 cd02526 GT2_RfbF_like RfbF is 24.2 5.9E+02 0.013 23.8 15.2 93 120-234 3-97 (237)
321 TIGR03030 CelA cellulose synth 20.5 9.5E+02 0.021 27.8 11.8 47 194-247 215-262 (713)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-77 Score=604.28 Aligned_cols=384 Identities=41% Similarity=0.713 Sum_probs=352.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~ 170 (524)
++++-|+|||||.|+||.|||+.++||.+|+||+|+|||++|+||.|+||++|.|+|||++.+|++||.+.| |+.+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 577889999999999999999999999999999999999999999999999999999999999999998766 54322
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+++.++++.+. +.++.|++|||+|++|.++.+++ ...++++|++|||+|+|||.++++.|++++||+|+++.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 2357999988766 34567999999999999999985 567999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~--- 327 (524)
++..++++||+|.+|++|+|++|.|||.... + ...+++||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~----~---------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGP----P---------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCC----c---------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999998721 0 12379999999999999999987543
Q ss_pred CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEc-Ceeeec
Q 009817 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKD 406 (524)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~-~~~i~~ 406 (524)
+..||++++||.+++.+++++|+|+|||.||||+++|++||++|++..|.+.+|++.|||+|.....||+++. .+.+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 3679999999999999999999999999999999999999999999778899999999999999999999995 577899
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
|.|+.||+|.+ .|+||+|+.+++|+++|.|++|+||++ ++||+||.|++|||++||.|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999997 999999999999999999999999999 9999999999999999999999
Q ss_pred CcEEeCC-CCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 487 DVVIVNK-DEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 487 ~~~i~~~-~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
|++|.+. .|.|+.. +.+. .|+++|+++..++.+..
T Consensus 357 g~~i~~~~~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 357 GVVIGGDKPEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CcEEcCCcchhcccc-cccc-CCcEEEecccEeccccc
Confidence 9999999 4888888 7777 99999999999988764
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.3e-75 Score=575.20 Aligned_cols=367 Identities=42% Similarity=0.683 Sum_probs=329.2
Q ss_pred ccCCCCCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhc
Q 009817 86 ERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFG 165 (524)
Q Consensus 86 ~~~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~ 165 (524)
+..+++ +.|+|+||.||.||||+|||.++||||+|++++ |||+++|++|+++||++|++.++|+++++++|+.+.|
T Consensus 2 ~~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-- 77 (371)
T KOG1322|consen 2 ETRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-- 77 (371)
T ss_pred Cccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh--
Confidence 345566 899999999999999999999999999999977 9999999999999999999999999999999999999
Q ss_pred CCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEE
Q 009817 166 NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADIT 245 (524)
Q Consensus 166 ~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~t 245 (524)
+.++| |+++.+.|++ +.|++||++++|+.+|.+++ .+|+||+|||+|+++|++|+|+|+++++++|
T Consensus 78 -~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~T 143 (371)
T KOG1322|consen 78 -GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEIT 143 (371)
T ss_pred -hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceE
Confidence 33566 9999988875 68999999999999999863 4999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCcceEEEECC-CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 246 ISCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 246 l~~~~~~~~~a~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
+++.++++ +++||+|++|+ +|+|.+|.|||+... + +-.++|+|+|++++|++++
T Consensus 144 I~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v--s-------------------nkinaGiYi~~~~vL~ri~-- 198 (371)
T KOG1322|consen 144 IVVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV--S-------------------NKINAGIYILNPEVLDRIL-- 198 (371)
T ss_pred EEEEeccC--ccccceEEEecCCCceeEehhCchhhh--h-------------------ccccceEEEECHHHHhHhh--
Confidence 99999988 89999999999 899999999999543 2 3457999999999999887
Q ss_pred hCCCCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcCeee
Q 009817 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRI 404 (524)
Q Consensus 325 ~~~~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i 404 (524)
.+|+ +++++++|.+++++++++|.++|||+|||+|+||+++ +.||+.+.+.++++++.||+++.++.+
T Consensus 199 ~~pt--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvl 266 (371)
T KOG1322|consen 199 LRPT--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVL 266 (371)
T ss_pred hccc--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEe
Confidence 4454 4899999999999999999999999999999999999 667888889999999999999999999
Q ss_pred eceEE--CCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 405 KDAII--SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 405 ~~siI--g~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
.|+++ |++|.|+. +|+||+||+|++|++|++|+||++++|++++++++.+.+|++|++++. +|++||
T Consensus 267 vd~~~~iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a 335 (371)
T KOG1322|consen 267 VDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNA 335 (371)
T ss_pred eccccccCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce-------EEeccc
Confidence 88665 55555552 499999999999999999999999999999999999999997666664 999999
Q ss_pred EECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeC
Q 009817 483 KIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIE 519 (524)
Q Consensus 483 ~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~ 519 (524)
+||+||+|.|.+ .-...+++++++|++.|.++++|.
T Consensus 336 ~lG~nV~V~d~~-~vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 336 VLGKNVIVADED-YVNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EeccceEEeccc-ccccceeEEeccceeecccccccC
Confidence 999999999986 122238999999999999999874
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=3.5e-66 Score=553.71 Aligned_cols=431 Identities=76% Similarity=1.266 Sum_probs=376.8
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~ 170 (524)
|++|+|||||||.||||+|||..+||||+||+|+||||||+|++|.++|+++|+|+++++.+++.+|+.+.| ++.+.++
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999997655 4444444
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
....+.++...|.. ..+.|++||+++++++++++++......++||+++||++++.++.++++.|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 44446776655542 1235789999999999988864211125899999999999999999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
++.+++++||++.+|++++|.+|.|||..+....+++++++|++++.+....++++++|+|+|++++|..++++.++...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999999999999999987766778899999998876444456799999999999999888877655555
Q ss_pred chhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEE
Q 009817 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siI 409 (524)
+|..++++.++++ .++++|.+++||.|||++++|++||+.++...+....+++.+++++.++..||+++.+++|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7888999999987 689999999999999999999999999998777666778888999988888999998899999999
Q ss_pred CCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcE
Q 009817 410 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 489 (524)
Q Consensus 410 g~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~ 489 (524)
+++|.|+++.|++|+||++|+|+++|+|.++++|+.+.|++......+...+.+++.||++|.|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998899999999999999999999999999887777665666666676677999999999999999999999999
Q ss_pred EeCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 490 IVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 490 i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
|.+++ +..+.+++++|.+|+++||+++.|++|++|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99887 566778899999999999999999999986
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.2e-64 Score=535.79 Aligned_cols=425 Identities=58% Similarity=1.005 Sum_probs=366.1
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.-. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 568899999999999999999999999999999989999999999999999999999999999999996543111 112
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.+.++...|.. ....|++||++||+++++++++ ...++|||++||+++++++.+|++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2335555544432 1234668999999999999862 2247899999999999999999999999999999999877
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
+.++++.||++.+|++|+|..|.|||.....+.+.++.++|...+.+.....+++++|+|+|++++|..+++... ...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-Chhh
Confidence 655567899999999999999999998665566777777777777665556679999999999999987776542 3346
Q ss_pred hhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh-ccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEEC
Q 009817 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (524)
Q Consensus 332 ~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~-~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg 410 (524)
+..++++.++++.++++|.+++||.|+||+++|++||+.++ ...+....+.+.+++++.+.+.||+.+.+++++++.||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77799999998899999999999999999999999999998 55566667778899999999999999988999999999
Q ss_pred CCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEE
Q 009817 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 411 ~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (524)
++|.|.++.|.+|+||.+|+||+||+|.+|++|++++|.....-..++-.+.+++.||+||.|++|+|+++|+||++++|
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999878999999999999999999999999999888777665666666677899999999999999999999999999
Q ss_pred eCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 491 VNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 491 ~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
.|++ ++++..+|++|..|+|+|++++.+++||+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9987 788889999999999999999999999986
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.7e-58 Score=488.93 Aligned_cols=385 Identities=36% Similarity=0.629 Sum_probs=317.9
Q ss_pred CCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
.|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|-..+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~-- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGL-- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcccc--
Confidence 478899999999999999999999999999999998999999999999999999999999999999999644311111
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
....+......+. .++.|++|||+||+++++++.+ ...++|||++||++++.++.+++++|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1111221111111 1346789999999999999863 122569999999999999999999999999999999877
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---C
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~---~ 327 (524)
++.+.++.||++.+|++|+|..|.|||..+... .. ...++++++|+|+|++++|..+|+... .
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 654456789999999999999999999754210 00 012468999999999999877676422 1
Q ss_pred CCCchhhhhHHhhhhcCceEEEEe------------cCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC
Q 009817 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (524)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~y~~------------~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p 395 (524)
...++..|+++.++++.++++|.+ ++||.||||+++|++||+.+++..+...++++..++++..+..|
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 234677899999999999999977 59999999999999999999987776677778889999888888
Q ss_pred CeEEc-Ce----eeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 396 PTKID-NC----RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 396 ~~~i~-~~----~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
|+.+. ++ .+.+++||+||.|+++.|++|+||++|+|+++|+|++|++|.+ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 88763 32 5679999999999889999999999999999999999999999 999999
Q ss_pred cEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEe-cCcEEEcCCCEe
Q 009817 471 TKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIR-SGITIIMEKATI 518 (524)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~-~g~~vv~~~~~i 518 (524)
|.|.+|+|+++++||.+++|.+..+.+ .++|.|. +|+++|++|+.|
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGVDLEED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CEEEeeEECCCCEECCCCEECCCcccc--ccceEeccceEEEeCCCCCC
Confidence 999999999999999999998854444 4478886 899999998864
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.3e-57 Score=479.46 Aligned_cols=370 Identities=38% Similarity=0.648 Sum_probs=316.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.. +..|+
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-----~~~~~ 75 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGI-----GSPWD 75 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhC-----CCccc
Confidence 6889999999999999999999999999999999889999999999999999999999999999888742 22332
Q ss_pred ----CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEE
Q 009817 172 ----DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 247 (524)
Q Consensus 172 ----~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~ 247 (524)
...+.++...+. +..++|++||++||+++++++.+ ...++|||++||++++.++.++++.|++++++++++
T Consensus 76 ~~~~~~~~~i~~~~~~--~~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~ 150 (380)
T PRK05293 76 LDRINGGVTILPPYSE--SEGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIA 150 (380)
T ss_pred ccCCCCCEEEeCCccc--CCCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEE
Confidence 123566532222 12346889999999999999862 123689999999999999999999999989999988
Q ss_pred EEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 248 ~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
+...+.+++..||++.+|++|+|.+|.|||..+. .+++++|+|+|++++|..+++....
T Consensus 151 ~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~ 209 (380)
T PRK05293 151 VIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEK 209 (380)
T ss_pred EEEcchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhh
Confidence 8776544567899999998899999999986432 3678999999999998777765322
Q ss_pred ---CCCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEc-Ce
Q 009817 328 ---TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NC 402 (524)
Q Consensus 328 ---~~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~-~~ 402 (524)
...+|..++++.++++ .++.+|.++++|.||||+++|++||+.++...+...++++.+.+++.+.+.+|++|+ ++
T Consensus 210 ~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 289 (380)
T PRK05293 210 NPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENA 289 (380)
T ss_pred cCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCC
Confidence 2346778999999876 689999999999999999999999999998777677888888999999999999996 58
Q ss_pred eeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 403 RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 403 ~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
+|.+++||+||.|+ +.+.+|+||++|+|+++|+|++|+++.+ +.||+++.|.+|+|++++
T Consensus 290 ~i~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~ 349 (380)
T PRK05293 290 KVKNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENA 349 (380)
T ss_pred EEecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCC
Confidence 89999999999997 5688999999999999999999999999 999999999999999999
Q ss_pred EECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 483 KIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 483 ~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+||.++.+.+... +..+||++++|+++++|
T Consensus 350 ~i~~~~~i~~~~~------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 350 VIGDGVIIGGGKE------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred EECCCCEEcCCCc------------eeEEEeCCCCCCCCcEe
Confidence 9999999998741 13689999999999886
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.5e-56 Score=474.96 Aligned_cols=390 Identities=36% Similarity=0.608 Sum_probs=319.6
Q ss_pred CCCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcc
Q 009817 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTN 169 (524)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~ 169 (524)
-.|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|-....+
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~ 90 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREE 90 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccC
Confidence 34678999999999999999999999999999999955999999999999999999999999999999997544001111
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
. ...+.++...+.. ..++|++|||+|++++++++++ ...++|+|++||++++.+|.++++.|+++++++|+++.
T Consensus 91 ~-~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~ 164 (425)
T PRK00725 91 L-GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACL 164 (425)
T ss_pred C-CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEE
Confidence 1 1245555544431 1235778999999999999862 12478999999999999999999999999999999988
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY--- 326 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~--- 326 (524)
++..+++..||++.+|++++|..|.|||..+.. ++. ....+++++|+|+|++++|..+|++..
T Consensus 165 ~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~------------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~ 230 (425)
T PRK00725 165 EVPREEASAFGVMAVDENDRITAFVEKPANPPA--MPG------------DPDKSLASMGIYVFNADYLYELLEEDAEDP 230 (425)
T ss_pred ecchhhcccceEEEECCCCCEEEEEECCCCccc--ccc------------CccceEEEeeEEEEeHHHHHHHHHHhhcCC
Confidence 775555678999999988999999999864320 000 002468999999999999877776532
Q ss_pred CCCCchhhhhHHhhhhcCceEEEEec-----------CeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC
Q 009817 327 PTSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (524)
Q Consensus 327 ~~~~d~~~dii~~li~~~~V~~y~~~-----------~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p 395 (524)
....+|..|+++.++++.++++|.++ +||.||||+++|++||+.++...+...+++...++++.....|
T Consensus 231 ~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~ 310 (425)
T PRK00725 231 NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLP 310 (425)
T ss_pred CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCC
Confidence 22457778999999999999999996 5999999999999999999987776777778888998888888
Q ss_pred CeEEc----C--eeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCC
Q 009817 396 PTKID----N--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (524)
Q Consensus 396 ~~~i~----~--~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~ 469 (524)
|+.+. + +.+.+|+||+||+|.++.|++|+||++|+|+++|+|++|++|++ +.||+
T Consensus 311 ~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~ 371 (425)
T PRK00725 311 PAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGR 371 (425)
T ss_pred CCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECC
Confidence 88662 2 45779999999999888999999999999999999999999999 99999
Q ss_pred CcEEeeeEECCCCEECCCcEEeCCCCCCCCCC-ceEEecCcEEEcCCCEeCC
Q 009817 470 NTKIRNCIIDKNVKIGKDVVIVNKDEADRPEL-GFYIRSGITIIMEKATIED 520 (524)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~-~~~i~~g~~vv~~~~~i~~ 520 (524)
+|.|++|||+++|+|+.+++|....+ ...+ ...+..|+++|++++.+.-
T Consensus 372 ~~~i~~~ii~~~~~i~~~~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~ 421 (425)
T PRK00725 372 SCRLRRCVIDRGCVIPEGMVIGEDPE--EDAKRFRRSEEGIVLVTREMLDKL 421 (425)
T ss_pred CCEEeeEEECCCCEECCCCEECCCCC--CCCceeEecCccEEEECCCccccc
Confidence 99999999999999999999975531 1122 3445689999999976543
No 8
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=3.4e-51 Score=427.84 Aligned_cols=356 Identities=50% Similarity=0.854 Sum_probs=291.1
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.||||+|||+.+||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.| +.. ......++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFD-GFIDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-Ccc-CccCCCEE
Confidence 6999999999999999999999999999977999999999999999999999999999999986543 111 00012356
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++...+. +..+.|++||+++++.+++++++ ...++|++++||++++.++.++++.|+++++++++++.+.+.+.+
T Consensus 79 ~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 6543332 12345778999999999998863 124789999999999999999999999888888988887765556
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---CCCCchh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFG 333 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~---~~~~d~~ 333 (524)
..||++.+|++++|..|.|||..+.... +. + ..+++++|+|+|++++|..+++... ....++.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~~--------~~-~-----~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSIP--------GM-P-----DFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCccccc--------cc-c-----cccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 7899999998899999999986443100 00 0 1247899999999999876666532 1234667
Q ss_pred hhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCC-CccCCCeEEcC-eeeeceEECC
Q 009817 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS-PRFLPPTKIDN-CRIKDAIISH 411 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~-~~i~p~~~i~~-~~i~~siIg~ 411 (524)
.++++.+++++++++|.++++|.||||+++|++|++.++.+.+....++.++++++. ..+.|+++++. +.|.+++||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 799999999999999999999999999999999999999876544444445555443 35566778865 5888999999
Q ss_pred CCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEe
Q 009817 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 412 g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (524)
+|.|+++.|.+|+||++|+|+++|+|.+|+++++ +.||+++.|++|+||++++||.++.|.
T Consensus 300 ~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 9999977999999999999999999999999998 899999999999999999999999997
Q ss_pred C
Q 009817 492 N 492 (524)
Q Consensus 492 ~ 492 (524)
|
T Consensus 361 ~ 361 (361)
T TIGR02091 361 N 361 (361)
T ss_pred C
Confidence 5
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.7e-51 Score=431.63 Aligned_cols=346 Identities=24% Similarity=0.424 Sum_probs=278.0
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCch-hHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~-~l~~hl~~~y~~~~~~~~ 171 (524)
+.|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|..+ ++.+|+.. +..|+
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-----~~~~~ 75 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-----GREWD 75 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-----CCCCC
Confidence 4689999999999999999999999999999998899999999999999999999999987 89888853 22232
Q ss_pred CC-----eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEE
Q 009817 172 DG-----FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 246 (524)
Q Consensus 172 ~~-----~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl 246 (524)
.. ...++ .++. ..|..|++++++++++++++ ...++|||++||++++.+|.+++++|+++++++|+
T Consensus 76 ~~~~~~~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl 146 (369)
T TIGR02092 76 LHRKRDGLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITV 146 (369)
T ss_pred cccccCcEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEE
Confidence 11 11111 1211 12334778889999988852 12378999999999999999999999999999999
Q ss_pred EEEEcCCCCCCcc-eEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 247 SCAAVGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 247 ~~~~~~~~~a~~~-g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
++.+++...+..| +++..|++|+|..|.+++.... ....++|+|+|++++|..+++..
T Consensus 147 ~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~ 205 (369)
T TIGR02092 147 VYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYEC 205 (369)
T ss_pred EEEecCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHH
Confidence 9988764334567 4567777788887754332211 23568999999999887777654
Q ss_pred CCC-CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCcccc-CCCCCCCCCCccCCCeEEc-Ce
Q 009817 326 YPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKID-NC 402 (524)
Q Consensus 326 ~~~-~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~-~~~~~i~~~~~i~p~~~i~-~~ 402 (524)
.+. ..++..++++.++++.++++|.+++||.||||+++|.+||++++++......+ ....++++...+.+|++|+ ++
T Consensus 206 ~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 285 (369)
T TIGR02092 206 IQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENS 285 (369)
T ss_pred hhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCC
Confidence 332 22455688998888889999999999999999999999999999875322222 2234566655667999995 58
Q ss_pred eeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 403 RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 403 ~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
+|.+|+||+||.|+ +.|++|+|+++|+|++||+|.+++++++ +.|++++.|++|+||+++
T Consensus 286 ~i~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~ 345 (369)
T TIGR02092 286 KVENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDV 345 (369)
T ss_pred EEEEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCC
Confidence 99999999999997 6799999999999999999999999999 999999999999999999
Q ss_pred EECCCcEEeCC
Q 009817 483 KIGKDVVIVNK 493 (524)
Q Consensus 483 ~Ig~~~~i~~~ 493 (524)
+||+++.+.+.
T Consensus 346 ~v~~~~~~~~~ 356 (369)
T TIGR02092 346 VIEPNVKIAGT 356 (369)
T ss_pred EECCCCEeCCC
Confidence 99999999775
No 10
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-50 Score=416.73 Aligned_cols=351 Identities=26% Similarity=0.465 Sum_probs=267.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+. ++..++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~-----d~~~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFG-----DGEGLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHh-----cccccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999877775 322232 2
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.+.+..+.. .+|||++|+++.+++. .++|++++||++++.|+.+++++|+++.+..++....+.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 355554333 3699999999999886 2899999999999999999999999998888888888776
Q ss_pred CCCCcceEEEECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 254 ~~a~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
+ ..||++..+++ ++|.+|.|||..... .+++.++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 4 68999998844 599999999953110 357999999999999998 3222 234566
Q ss_pred hhhhHHhhhhcCc-eEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCC---CCCCCccCCCeEEcCeeeeceE
Q 009817 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP---FYTSPRFLPPTKIDNCRIKDAI 408 (524)
Q Consensus 333 ~~dii~~li~~~~-V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~---i~~~~~i~p~~~i~~~~i~~si 408 (524)
..+++|.++++.. +++|.++++|.|||||++|.+|+..+..............+ +.. +.+.+|++|+. ++.
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~ 269 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAK 269 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCE
Confidence 7789999999986 99999999999999999999999999864432210000000 111 33333444332 344
Q ss_pred ECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCc
Q 009817 409 ISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (524)
Q Consensus 409 Ig~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~ 488 (524)
|+++|.|+. +|+||++|+|+.+++|++|++|.+ +.||++++|.+|||+.||+||++.
T Consensus 270 i~~~~~i~~----~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~ 326 (358)
T COG1208 270 IGPGALIGP----YTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL 326 (358)
T ss_pred ECCCCEECC----CcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce
Confidence 444444442 589999999999999999999999 999999999999999999999922
Q ss_pred EEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 489 VIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 489 ~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
. --+ .....+..+..| +++++++.+..+++
T Consensus 327 -~--i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~ 356 (358)
T COG1208 327 -I--IGD-VVIGINSEILPG-VVVGPGSVVESGEI 356 (358)
T ss_pred -e--ecc-eEecCceEEcCc-eEeCCCccccCccc
Confidence 2 111 222223344333 45555555555443
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=4.5e-46 Score=388.29 Aligned_cols=328 Identities=20% Similarity=0.349 Sum_probs=256.5
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEecc-CchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~-~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+|||||||.||||+|||..+||||+||+|+ |||+|+++++.++|+++|+|++++ ..+++.+|+.. +..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-----GERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-----ccccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 88888888752 223431 1
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
+.++. +. +.+||++++++++.+++ .++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 33332 21 23699999999998875 3689999999999999999999999999999999888765
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~ 332 (524)
+..|+++.+|++++|..|.|||..+. +.+.++|+|+|++.++. ++++..+. ...+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 45799988887789999999987542 36789999999997665 45543332 3344
Q ss_pred hhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEc-CeeeeceEEC
Q 009817 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (524)
Q Consensus 333 ~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~-~~~i~~siIg 410 (524)
..++++.++++ .++++|.++++|.||||++||++||+.++++... .+ . ++.+.+.+.||++|+ +++|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 67899999877 5899999999999999999999999999985321 11 1 245566666777774 3666666666
Q ss_pred CCCEEC-ceEEeceEEcCCcEECCCCEEe-----ceEEeCCccccchhhHHhhhcCCccceEeCCC-cEEeeeEECCCCE
Q 009817 411 HGCFLR-ECTVEHSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVK 483 (524)
Q Consensus 411 ~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-----~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~-~~I~~~iI~~~~~ 483 (524)
.+|.|+ +|.|.+|+|+.+|.||++|+|+ +++++.+ +.|+.+ +.+.+|+|+++++
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCE
Confidence 666666 4566666666666666666665 4555544 788877 4888899999999
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
|+.++.|.+.
T Consensus 331 i~~~~~~~~~ 340 (353)
T TIGR01208 331 IKGNRRRPGD 340 (353)
T ss_pred ECCCcccccc
Confidence 9999888853
No 12
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.5e-43 Score=380.07 Aligned_cols=387 Identities=21% Similarity=0.291 Sum_probs=286.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++++|||||||.|+||++ .+||||+|++|+ |||+|+|+++.++|+++|++++++..+++.+|+.+ +.
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~-----~~--- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAG-----DG--- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhcc-----CC---
Confidence 6678999999999999974 689999999999 99999999999999999999999998888777641 10
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.+.++...+ .+||++++++++.++++ ..++|++++||+ +...++.++++.|.+.++++++++.
T Consensus 69 --~i~~~~~~~---------~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 69 --DVSFALQEE---------QLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred --ceEEEecCC---------CCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 244432211 25999999999998862 247899999998 4467899999999888888888887
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~- 328 (524)
+..+ +..|+.+.+|++++|..|.|||.....+ ..++++++|+|+|++++|.++++...+.
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7655 3579999999999999999987432110 0236789999999999876666654322
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCccccCCCC-CCCCCCccCCC
Q 009817 329 --SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-PFYTSPRFLPP 396 (524)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~~~~~-~i~~~~~i~p~ 396 (524)
...+..++++.++++ .++.+|.++++ |.|++|+++|++|++.+.... ....++++.. .+...+.++++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 334567999999987 57999999988 999999999999988666432 1123455543 35566666666
Q ss_pred eEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCc--------c
Q 009817 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGK--------V 463 (524)
Q Consensus 397 ~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~--------~ 463 (524)
+.|. +|.|. +++||++|.|+ ++.|.+|+||++|+|+.++.|.++++..+..++....+ .+.++++. -
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~ 354 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK 354 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence 6664 36664 58889999998 68888899999999999998888888777666544322 22333330 0
Q ss_pred ceEeCCC------cEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 464 PIGVGRN------TKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 464 ~~~Ig~~------~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
.+.||++ ++|.+|+|++++.||.++++.|.+ ......++.+|+.+. +.||++++|++|++|
T Consensus 355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 1223333 333467888999999998887654 224566677777664 477777777777764
No 13
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1e-42 Score=377.34 Aligned_cols=386 Identities=19% Similarity=0.223 Sum_probs=282.1
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
+.++.+||||||.||||+| .+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.. + .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~ 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAE-L-------A 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 3567899999999999987 589999999999 99999999999999999999999988777766631 1 1
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
. .+.++... +..||+++++.++.++.+ ...++|++++||+ ++ ..++.++++.|++.++++++++.
T Consensus 70 ~-~~~~~~~~---------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 70 P-EVDIAVQD---------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred C-ccEEEeCC---------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 0 13333221 236999999999988752 1246799999998 44 46799999999888888888877
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~- 328 (524)
+.++ +..|+.+..|++|+|..|.|||.....+ ....++++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 4679999888899999999998854211 0124689999999999998777654332
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHH------HHHHHHhhccC---------CCccccCCCCCCCCC
Q 009817 329 --SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHFYDPKTPFYTS 390 (524)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~------~~An~~l~~~~---------~~~~~~~~~~~i~~~ 390 (524)
.+.+..|+++.++++ .+|++|.+++||.|+|+++.+ ..+|+.++... |...++++...+.+.
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 345568999999987 589999999999999999888 55555444331 112223333334344
Q ss_pred CccCCCeEE------------c-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-H
Q 009817 391 PRFLPPTKI------------D-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (524)
Q Consensus 391 ~~i~p~~~i------------~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~ 455 (524)
++|.|++.| + +|.|.+++||++|.|+++.+.+++||.++.||+++.|. ++++..+..++.++++ .
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 333333333 2 25555677777777776667788888888888888886 5555555556666543 5
Q ss_pred hhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 456 ~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.++++ +.|++.+.+.+|+||++|.||.++++.+.+ ......++..|+.+. +.||++++|++|++|
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 567777 788888888999999999999999998764 123445555555443 378888888888764
No 14
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.9e-43 Score=355.94 Aligned_cols=382 Identities=21% Similarity=0.269 Sum_probs=309.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
++.+||||||.||||. +.+||-|.||+|+ ||++|+++.+...+.++|.+|+++..+++...+.+. .
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~--- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------D--- 67 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------c---
Confidence 4689999999999997 4699999999999 999999999999999999999999999988777421 0
Q ss_pred eEEE-EccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 009817 174 FVEV-LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 174 ~V~v-l~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+++ ++.. ++||+||+++++++|.+ ....++||++||+ |... .+.+|++.|...++.+++++..
T Consensus 68 ~v~~v~Q~e----------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~ 134 (460)
T COG1207 68 DVEFVLQEE----------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAE 134 (460)
T ss_pred CceEEEecc----------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEE
Confidence 1222 3322 36999999999999942 2345799999999 5554 5788999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~--- 327 (524)
.++ |..||-+..+++|.|..+.|.....+.+ +.-...++|+|+|+...|.++|.....
T Consensus 135 ~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~ee-----------------k~I~eiNtGiy~f~~~~L~~~L~~l~nnNa 195 (460)
T COG1207 135 LDD--PTGYGRIVRDGNGEVTAIVEEKDASEEE-----------------KQIKEINTGIYAFDGAALLRALPKLSNNNA 195 (460)
T ss_pred cCC--CCCcceEEEcCCCcEEEEEEcCCCCHHH-----------------hcCcEEeeeEEEEcHHHHHHHHHHhccccc
Confidence 887 5789999999999999999987654321 123578999999999988887765432
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCcccc-------CCCCCCCCCC
Q 009817 328 TSNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFY-------DPKTPFYTSP 391 (524)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~-------~~~~~i~~~~ 391 (524)
..+.|..|++..+-.+ .+|.++..+++ ..-+++-..|.+|++.|..+. ....++ +.+..+...+
T Consensus 196 qgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dv 275 (460)
T COG1207 196 QGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDV 275 (460)
T ss_pred cCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCce
Confidence 3567889999877665 68999998875 577889999999988776542 123333 3444555556
Q ss_pred ccCCCeEEc-------------CeeeeceEECCCCEECc-eEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-H
Q 009817 392 RFLPPTKID-------------NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (524)
Q Consensus 392 ~i~p~~~i~-------------~~~i~~siIg~g~~I~~-~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~ 455 (524)
.|.|++.+. +|.|+||.|++||.|.. +.+++|.||.+|.||+.++|+ ++.+..+..++.|+|+ .
T Consensus 276 vI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~ 355 (460)
T COG1207 276 VIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKK 355 (460)
T ss_pred EEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEec
Confidence 666644442 25667788888888885 888999999999999999998 6666666999999998 9
Q ss_pred hhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 456 ~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.+++| +.+++-++|.+|.||+++.||++++..|.|. .+.++++.||+|+. +.||++++|++||+|
T Consensus 356 a~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 356 ATIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred ccccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 999999 9999999999999999999999999999993 37788899999886 489999999999987
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-42 Score=372.50 Aligned_cols=381 Identities=19% Similarity=0.267 Sum_probs=257.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
++|+|||||||.||||+| .+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. ..+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~--------~~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ--------GSG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc--------cCC-
Confidence 368999999999999987 489999999999 9999999999999999999999998887776653 111
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
+.++... +++||+++++.++.+++. ..++|++++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 4454322 246999999999888751 235799999998 44567999999999999999988887
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---C
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~---~ 327 (524)
+++ ++.||++.+|++|+|.+|.|||..+..+ ....++++|+|+|+++++. +++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCcc
Confidence 765 4569999999999999999998743210 0124689999999977532 333321 2
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHH-hhccCC-------CccccCCCCC-CCCCCccCCCe
Q 009817 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMA-LTKESP-------AFHFYDPKTP-FYTSPRFLPPT 397 (524)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~-l~~~~~-------~~~~~~~~~~-i~~~~~i~p~~ 397 (524)
..+.+..|+++.++++ .++++|.+.++|..++...+++.+++. ++.... .....+|... +.+.+.+++++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~ 277 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDV 277 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCC
Confidence 2334567999999887 479999999999999988888777765 332210 1111222111 12222223333
Q ss_pred EEc-C------------------eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-H
Q 009817 398 KID-N------------------CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (524)
Q Consensus 398 ~i~-~------------------~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~ 455 (524)
.|. + |.|.+|+|+++|.|+ ++.|.+++||+++.|+++++|. ++++.++..++.++++ .
T Consensus 278 ~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 278 TIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred EEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 332 1 333344444444444 3444444445555555554443 3444444444444443 3
Q ss_pred hhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 456 ~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.+.++ +.||+.+.+.+|+||+||.||.++++.|.. ....++++..|..+. ++||.++.|++|++|
T Consensus 358 ~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 358 ARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred ceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 444555 566666667789999999999999998864 123455566665553 367777777777754
No 16
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=8.1e-42 Score=366.89 Aligned_cols=377 Identities=20% Similarity=0.268 Sum_probs=268.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.||||+| .+||||+||+|+ |||+|+++++.++|+++|+|++++..+.+.+|+. . ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~-~-------~~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALA-N-------RD--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhc-C-------CC---
Confidence 6899999999999997 689999999999 9999999999999999999999998888777663 1 22
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++...+ ..||++++++++.+++ ..++|++++||+ ++ ..++.++++.|.+. ..++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~-----~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLP-----DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcC-----CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 34433221 2499999999998885 236899999998 33 46789999988764 3677776664
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---C
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~---~ 329 (524)
+ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|..+++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 4569999999889999999998643210 0125789999999999987766653322 2
Q ss_pred CchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccCCC------ccc-------cCC------CCCC
Q 009817 330 NDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FHF-------YDP------KTPF 387 (524)
Q Consensus 330 ~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~~~------~~~-------~~~------~~~i 387 (524)
+.+..++++.++++ .++++|.++++ |.+++|++++..++..+..+.+. ..+ +.+ ...|
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 34567899999887 57999999988 99999999999987765532110 011 111 1122
Q ss_pred CCCC------ccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhh
Q 009817 388 YTSP------RFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASL 457 (524)
Q Consensus 388 ~~~~------~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~ 457 (524)
.+.+ .+++++.|+ +|.|.+++|+++|.|+ ++.+.+++||.+|.||++++|. ++++.++..++..+++ .+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 2222 222233332 2445566666666666 5666667777777777777775 4555555555555544 356
Q ss_pred hcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 458 ~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++++ +.|++.+.|.+|.||+|+.||.++++.+.+ ......++.+|+.|. +.||++++|++|++|
T Consensus 351 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 351 IGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred ECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 6666 667777777789999999999999998754 124455667777663 478889999988875
No 17
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-41 Score=365.02 Aligned_cols=379 Identities=18% Similarity=0.259 Sum_probs=279.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|+.|++||||||.||||++ .+||||+|++|+ |||+|+++++.++|+++|++++++..+++.+|+. .+
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~-----~~---- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLA-----DE---- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhc-----cC----
Confidence 4578999999999999983 689999999999 9999999999999999999999998777766653 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.++++.... .+||+++++.++.++. ..+.||+++||+ +...++.++++.|.+.+ +++++.
T Consensus 70 --~~~~i~~~~---------~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~ 131 (456)
T PRK09451 70 --PLNWVLQAE---------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTV 131 (456)
T ss_pred --CcEEEECCC---------CCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEE
Confidence 134443221 2599999999988874 237899999998 45678999998886543 456666
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC--
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~-- 327 (524)
+.++ ++.||++.. ++++|..|.|||.....+ ....++++|+|+|++++|.++++...+
T Consensus 132 ~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~ 191 (456)
T PRK09451 132 KLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNN 191 (456)
T ss_pred EcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCcc
Confidence 6554 467998754 578999999999642210 013578999999999999877765433
Q ss_pred -CCCchhhhhHHhhhhc-CceEEEE------ecCe--EeecCCHHHHHHHHHH--h-hcc----CCC-cc----------
Q 009817 328 -TSNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANMA--L-TKE----SPA-FH---------- 379 (524)
Q Consensus 328 -~~~d~~~dii~~li~~-~~V~~y~------~~~~--w~dIgt~~d~~~An~~--l-~~~----~~~-~~---------- 379 (524)
..+.+..|+++.++++ .++.+|. +.|| |.|++++++|+++|+. + ... .|. +.
T Consensus 192 ~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~ 271 (456)
T PRK09451 192 AQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRD 271 (456)
T ss_pred ccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCC
Confidence 2445678999999988 5899996 4566 7889999999999852 2 211 121 10
Q ss_pred -ccCCCCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-
Q 009817 380 -FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI- 454 (524)
Q Consensus 380 -~~~~~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~- 454 (524)
.+.+...+...+.+++++.|+ +|.|.+++|+++|+|+ ++.+++|+||.++.|++++.|. ++.+.++..++.++++
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeee
Confidence 222333344344455555553 3667788888888888 6778888888888888888886 6777777777777666
Q ss_pred HhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC-C---CCCCCCceEEecCcE-----EEcCCCEeCCCccc
Q 009817 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-E---ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 524 (524)
Q Consensus 455 ~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-e---~~~~~~~~~i~~g~~-----vv~~~~~i~~gtvI 524 (524)
.+.++++ +.+++.+.+.+|.||++|.||.++++.+.+ . ...++++.+|+.+.+ .||.+++|++|++|
T Consensus 352 ~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 352 KARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred ceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 6677777 778888888899999999999999998764 1 244666666665532 67777777777764
No 18
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.2e-41 Score=358.74 Aligned_cols=371 Identities=19% Similarity=0.264 Sum_probs=278.1
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.++|||||||.||||+| .+||||+||+|+ |||+|+++.+.++ +++|.|++++..+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-------~-- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-------P-- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-------C--
Confidence 46899999999999987 699999999999 9999999999987 78999999999999988875311 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.++++...+. .+.||+++++++.. ..++||+++||..+. ..+.++.+.+.++++++++.+.++
T Consensus 68 ~v~~~~~~~~-------~~~gt~~al~~~~~--------~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDLE-------NYPGTGGALMGIEP--------KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecCc-------cCCCcHHHHhhccc--------CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 2555532211 23699999987421 247999999998442 234555566667888888887765
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---CCC
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~~~ 330 (524)
+..|+.+..| +|+|..+.|||...... ...+..++|+|+|++++|..+++.... ..+
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4569988775 68999999988643100 013578999999999999876654321 133
Q ss_pred chhhhhHHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHhhccCC-C------------ccccCCCCCCCCCCccCC
Q 009817 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLP 395 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~~~-~------------~~~~~~~~~i~~~~~i~p 395 (524)
.+..|+++.+++. .++.+|.++ ++|.||+|++||..|+..+..+.. . -.++++...+.....+++
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4567889888876 689999997 589999999999999876654321 0 012233444555556666
Q ss_pred CeEEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe
Q 009817 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (524)
Q Consensus 396 ~~~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~ 474 (524)
+++|. ++.|.+++|+++|.|+++.+++|+||++++|++++.|+++.+.....++. +++ ++ +.||+++.|.
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-----~~~-~~---~~i~~~~~i~ 341 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-----AKL-NG---VKAGHLSYLG 341 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-----cEe-cc---cccccccccc
Confidence 77774 47778999999999998899999999999999999998887776642222 344 67 8999999999
Q ss_pred eeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 475 NCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+|+||++|.||.++++.+.+. ....+++.+|+.+. +.||++++|++|++|
T Consensus 342 d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 342 DCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred CCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 999999999999999988752 24556667776663 477888888888764
No 19
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-42 Score=333.41 Aligned_cols=358 Identities=23% Similarity=0.368 Sum_probs=278.9
Q ss_pred ceeEEEEeCC--CCCcccCCccCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 94 ~m~aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
.++||||.|| +||||+||+...||||+||+|. |||+|.++.|.+ +|..+|+++--|..+.+.+++.+.- + .|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~--~--e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ--Q--EF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH--h--hc
Confidence 4689999999 6999999999999999999999 999999999998 5999999998888777777775321 1 23
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
. -.|.++.++.+ +|||++|..+++.+-. ...+.|+++++|+.+++++.+|++.|+..++.+++++.+
T Consensus 77 ~-~pvrYL~E~~p---------lGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLREDNP---------LGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccCCC---------CCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 12666766554 6999999999988752 456899999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEC-CCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh---h-
Q 009817 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---R- 325 (524)
Q Consensus 251 ~~~~~a~~~g~v~id-~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~---~- 325 (524)
+..+.+++||.+..| .+|+|+++.|||.... +++.++|+|+|++++|..+-+- .
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~ 202 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQ 202 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHH
Confidence 998889999999888 7899999999999763 5789999999999998754221 0
Q ss_pred --------C----CCCCch---hhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCC---CC
Q 009817 326 --------Y----PTSNDF---GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKT---PF 387 (524)
Q Consensus 326 --------~----~~~~d~---~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~---~i 387 (524)
. +...|| ..|++..++.++++++|..+++|..|.|+-+-+.||+.++.+... +++.. .=
T Consensus 203 ~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~---t~p~~Lak~p 279 (407)
T KOG1460|consen 203 DLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKR---THPARLAKGP 279 (407)
T ss_pred hhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhh---cCchhhcCCC
Confidence 0 112333 358999999999999999999999999999999999999875421 11110 00
Q ss_pred CCCCccCCCeEEcCeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEe
Q 009817 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (524)
Q Consensus 388 ~~~~~i~p~~~i~~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~I 467 (524)
.+.+.|..+++|+. .+.+.+.+.|+. |+.||.+++||+|++|++|+|+++ +.|
T Consensus 280 gt~a~IigdVyIhP----sakvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 280 GTQAEIIGDVYIHP----SAKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred CCCceEEeeeEEcC----cceeCCccccCC----CceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 11233444455543 345555666663 467888999999999999999999 899
Q ss_pred CCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 468 GRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 468 g~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
.+|+.+-+||||.++.||+++.+....-..++.-.+ + -.++.|..+.++|-++
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~-~--a~Tilga~v~v~dev~ 385 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPF-A--ALTILGADVSVEDEVI 385 (407)
T ss_pred eccceEEeeeecccccccceeeecccccccCCCCCc-c--eeEEecccceecceeE
Confidence 999999999999999999999999875111111111 1 3356666666666554
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.6e-40 Score=355.00 Aligned_cols=381 Identities=17% Similarity=0.215 Sum_probs=257.4
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.+.|||||||.||||+ ..+||||+|++|+ |||+|++++|...++++|+|++++..+.+.+++. . .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP-----D---E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc-----c---c---
Confidence 5789999999999997 4689999999999 9999999999999999999999998777654442 1 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.++++..+. ..||+++++.+++++++ ...++|++++||+ ++ ..++.++++.|. ++++++.+.+.
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443221 25999999999988863 2347899999998 44 456899998875 66788888777
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---C
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~ 328 (524)
++ +..||.+.. ++|+|..|.|||....... ...+.++++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 65 457998877 5789999999986431100 0013578999999999998776654322 2
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecC--eEeecCCHHHHHHHHHHhhccCC------Ccc-------ccCCCCCCCCC--
Q 009817 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESP------AFH-------FYDPKTPFYTS-- 390 (524)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~y~~~~--~w~dIgt~~d~~~An~~l~~~~~------~~~-------~~~~~~~i~~~-- 390 (524)
.+.+..++++.+++. .++++|.+.+ .|.+|+|++||..|+..+..+.. ... .+++...+.++
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~ 277 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAE 277 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCE
Confidence 345667889888765 5799999876 57999999999999877765421 011 11111111111
Q ss_pred ----------CccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hh
Q 009817 391 ----------PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (524)
Q Consensus 391 ----------~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~ 456 (524)
+.+++++.|+ +|.|.+++|+++|.|+ ++.|.+|+||.+|.||++++|. ++++.++..++..+++ .+
T Consensus 278 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~ 357 (456)
T PRK14356 278 IYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKA 357 (456)
T ss_pred EeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeee
Confidence 2223333332 2444455555555555 3555556666666666666664 4455555555555444 34
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+++++ +.|++++++.+|+||+++.||.++++.+.+. ..+..++.+++.+. +.||++++|++|++|
T Consensus 358 ~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 358 VLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred EecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 55555 5666666666788888888888887766541 23445555555443 367888888888764
No 21
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.6e-40 Score=351.14 Aligned_cols=379 Identities=20% Similarity=0.234 Sum_probs=258.6
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|+++.|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.+ + +
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------~ 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I-------A 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 5678999999999999984 589999999999 99999999999999999999999988888777641 1 1
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
. .+.+.... +..|++++++.++.++++ ..++|++++||+ +++ .++.++++ |.+.++++++.+.
T Consensus 71 ~-~~~~~~~~---------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~ 135 (446)
T PRK14353 71 P-DAEIFVQK---------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGF 135 (446)
T ss_pred C-CceEEEcC---------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEE
Confidence 0 12222211 125999999999888752 247899999998 554 45788887 4455677888777
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC--
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~-- 327 (524)
+..+ +..||.+.. ++++|..+.|||+....+ ....++++|+|+|+++.|..+++....
T Consensus 136 ~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 195 (446)
T PRK14353 136 RAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDN 195 (446)
T ss_pred EeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccC
Confidence 7654 457988877 578999999998643210 012578999999999887667765432
Q ss_pred -CCCchhhhhHHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHhhccC-------------CCccccCCCCCCCCCC
Q 009817 328 -TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSP 391 (524)
Q Consensus 328 -~~~d~~~dii~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~~-------------~~~~~~~~~~~i~~~~ 391 (524)
....+..++++.++++ .++++|.++ ++|.||+||+||..|+..+..+. +...++.+.+.|.+++
T Consensus 196 ~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 275 (446)
T PRK14353 196 AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDV 275 (446)
T ss_pred CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCC
Confidence 1334567888888876 579999987 56999999999999996553221 1111223333444444
Q ss_pred ccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-HhhhcCCccceEeC
Q 009817 392 RFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGKVPIGVG 468 (524)
Q Consensus 392 ~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~~g~~~~~Ig 468 (524)
.+.|++.|++ ++.||++|.|+ ++.|.+|+||.+|+||+++.|. ++++.+++.+++..++ .+.++++ +.|+
T Consensus 276 ~i~~~~~I~~----~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~ 348 (446)
T PRK14353 276 VIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVN 348 (446)
T ss_pred EECCCCEECC----CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEEC
Confidence 4444444432 45566666665 4555666666666666666665 5555555555554433 3444444 6777
Q ss_pred CCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 469 RNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 469 ~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+++.+.+++||++|.||.++++.+.+. .....++..|+.|. +.||+++.|++|++|
T Consensus 349 ~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 349 HLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred CeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 777788888888888888887766431 12333444444442 356777777777654
No 22
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-39 Score=348.83 Aligned_cols=372 Identities=22% Similarity=0.249 Sum_probs=260.9
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.||||++ .+||||+|++|+ |||+|+++++.+.+ ++|+|++++..+.+.+|+. .+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~-----~~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP-----EW------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc-----cc-------
Confidence 6899999999999974 689999999999 99999999999975 8999999998877765542 21
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++. +. ..+||+++++.++.+++ ..++|++++||. +...++.++++.|+++++++++++.+.+
T Consensus 64 ~~~~~--~~-------~~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QE-------EQLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cC-------CCCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23332 11 13699999999998875 247899999997 5567899999999988999999988876
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---C
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~---~ 329 (524)
+ +..||.+..| +++| .+.|||..+... ...+++++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 4579998887 6788 888877533110 0125789999999999987776653322 2
Q ss_pred CchhhhhHHhhhhcCceEEEEecCe--EeecCCHHHHHHHHHHhhcc------CCCcc-------ccCCCCCCCCCCccC
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE------SPAFH-------FYDPKTPFYTSPRFL 394 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~------~~~~~-------~~~~~~~i~~~~~i~ 394 (524)
..+..|+++.+ .++.+|.+.++ |.+++++++|..+...+... .+... ++++.+.|..++.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 23445777766 35889999998 66777999998877655321 01112 223333344444444
Q ss_pred CCeEEc-------------CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhhhc
Q 009817 395 PPTKID-------------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (524)
Q Consensus 395 p~~~i~-------------~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~ 459 (524)
|++.|. +|.|.+|+||+||.|..+.+.+|+|+.++.|+++++|+ ++++.++..++..+++ .+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 433332 24444566666666665666677777777777777774 3556665555555444 34556
Q ss_pred CCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++ +.+++.+++.+++||+||.||.++++.+.. ....+.++.+|+.+. +.||+++.|++|++|
T Consensus 346 ~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 346 EN---TKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CC---cCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 66 566666677788899999999998887654 124566677777664 477888888888765
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.4e-39 Score=347.61 Aligned_cols=380 Identities=23% Similarity=0.295 Sum_probs=269.9
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.++|||||||.|+||++ .+||||+||+|+ |||+|+++++.++|++++++++++..+++.+|+. .+
T Consensus 2 ~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~-----~~------ 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG-----DR------ 66 (458)
T ss_pred CceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc-----CC------
Confidence 46899999999999974 699999999999 9999999999999999999999998888766653 21
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-cccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l-~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++... +..||++++++++.++++ ..+.|++++||. + ...++.++++.|.+.+++.++++.+.
T Consensus 67 -~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~ 132 (458)
T PRK14354 67 -SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA 132 (458)
T ss_pred -cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc
Confidence 2222211 135999999999988852 236799999997 3 35678999999988888888887766
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--- 328 (524)
++ +..|+.+..|++++|..+.|||..... . ...+++++|+|+|+++.|...++.....
T Consensus 133 ~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~---------------~--~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 193 (458)
T PRK14354 133 EN--PTGYGRIIRNENGEVEKIVEQKDATEE---------------E--KQIKEINTGTYCFDNKALFEALKKISNDNAQ 193 (458)
T ss_pred CC--CCCceEEEEcCCCCEEEEEECCCCChH---------------H--hcCcEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 54 456898888888999999998853110 0 0235789999999998766666553321
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCccccCCC-------CCCCCCCc
Q 009817 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSPR 392 (524)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~~~~-------~~i~~~~~ 392 (524)
.+.+..++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...+++++ ..+.+.+.
T Consensus 194 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~ 273 (458)
T PRK14354 194 GEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTV 273 (458)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCE
Confidence 233456888888876 57999999976 567789999999986553211 122333332 22333333
Q ss_pred cCCCe------------EEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhh
Q 009817 393 FLPPT------------KID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASL 457 (524)
Q Consensus 393 i~p~~------------~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~ 457 (524)
+.|++ .|. ++.|.+++|+++|.|+++.+.+|+||.+|+||++|.|. ++++..+..++..+++ .+.
T Consensus 274 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~ 353 (458)
T PRK14354 274 IEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST 353 (458)
T ss_pred EeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeE
Confidence 33322 221 24445667777777776677778888888888888887 6666666666666555 455
Q ss_pred hcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 458 ~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++++ +.|++.+.+.+|+||+|+.||.++.+.|.+. .....++.+|+.+. +.||++++|++|++|
T Consensus 354 i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 354 IGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred ECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 6666 6677777778888889999999988877541 12334444554442 477888888888765
No 24
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-39 Score=315.24 Aligned_cols=234 Identities=26% Similarity=0.423 Sum_probs=202.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|++||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++..... +..+++|.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~----~~llGdgs~~g--- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTF----KELLGDGSDFG--- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhh----hhhhcCccccC---
Confidence 7999999999999999999999999999999 999999999999999999999998654322 23357888998
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
+.+.++.|+. +.|.|+|+..+.+++. .++|+++.||.++..++.++++.+.++.++.++++.++++
T Consensus 73 v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d- 138 (286)
T COG1209 73 VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD- 138 (286)
T ss_pred cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC-
Confidence 5666666764 3699999999999986 4999999999988779999999999888899999999997
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~ 332 (524)
+++||++++|++|+|+.+.|||..++ |+++-+|+|+|+++++. .++.-.|+ .+.-
T Consensus 139 -P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElE 195 (286)
T COG1209 139 -PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELE 195 (286)
T ss_pred -cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceE
Confidence 57899999999999999999999875 68999999999999997 45655554 2333
Q ss_pred hhhhHHhhhhcC-ceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 333 GSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 333 ~~dii~~li~~~-~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
.+|+++.+++++ .+......|.|.|.||++||++|+..+..
T Consensus 196 ITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 196 ITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred ehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 578999999884 66777778899999999999999998876
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.2e-38 Score=337.05 Aligned_cols=378 Identities=20% Similarity=0.244 Sum_probs=274.3
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||.|+||++ .+||||+|++|+ |||+|+++++.++|+++++|++++..+++.+|+.+ ++ .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~--------~~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH--------LP--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc--------cC--C
Confidence 6799999999999985 689999999999 99999999999999999999999988777766631 11 2
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++... ++.|++++++.++.++++ ..+++++++||+ +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 4555322 135999999999888752 236799999998 4456799999999998888888777766
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---C
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~---~ 329 (524)
+ +..||.+.+|++|+|..|.|||...... ..++++++|+|+|+++.|.++++...+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 4569999999999999999998642110 0246889999999999988877654432 3
Q ss_pred CchhhhhHHhhhhcCceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCccccCC------------------
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP------------------ 383 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~~~------------------ 383 (524)
+.+.++.++.+. ++..|.+.++ |..+++++++..+...+.... +...++++
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 345567776663 3667777776 456999999999877654321 11112222
Q ss_pred -CCCCCCCCccCCCeEEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhhhc
Q 009817 384 -KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (524)
Q Consensus 384 -~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~ 459 (524)
...+.+...+++++.|. ++.|.+++|+++|.|+.+.+.+|+||++|.|+++|.|. ++++.+++.++..+.+ .+.++
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~ 352 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLG 352 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccC
Confidence 12222233344444442 35666788888888877778889999999999999997 6777777777766654 56777
Q ss_pred CCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++ +.|++++++.+++|+++|.||.++++.+.+ ......++..|+.+. +.||.++.|++|+++
T Consensus 353 ~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v 423 (450)
T PRK14360 353 EG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTI 423 (450)
T ss_pred CC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEE
Confidence 77 777788888888999999999999888743 123444455555442 356666666666653
No 26
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=1.7e-38 Score=323.03 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=192.5
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-h------
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~------ 164 (524)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|+++|.++++.+|+...| +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999999 9999999999999999999999999999998885322 1
Q ss_pred ----------cCCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 009817 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (524)
Q Consensus 165 ----------~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~------- 227 (524)
..+..++ +.+....|. +++|||+||++++.+++ .++|++++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 1111122 233222232 35799999999999885 26899999999987
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE----CCCCc---EEEEEecCCcccccccccccccccCCcccc
Q 009817 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (524)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i----d~~g~---V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~ 299 (524)
+++.++++.|.++++.+ +++.++.+ .++.||++.+ |++|+ |..|.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 58999999998777765 44444432 2678999998 44564 5899999964421
Q ss_pred ccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 300 ~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
..++++++|+|+|++++|.. ++...+. .+....|+++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 12478999999999998874 4543332 22345699999999999999999999999999999999999875
No 27
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=3.3e-38 Score=312.03 Aligned_cols=241 Identities=34% Similarity=0.588 Sum_probs=193.5
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeE-EEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I-~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
||||||||.||||+|||..+||||+|++|+||||+|+|++|.++|+++| +|+++++.+++.+|+.. ..+++ ..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-----~~~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-----GYKFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-----SGGGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc-----ccccc-cc
Confidence 6999999999999999999999999999999999999999999999995 55555777788777752 22333 12
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++++..... .||++||++++..+++. ...++|++++||++++.++.++++.|++++++.++++...+..
T Consensus 75 i~~i~~~~~---------~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIVQPEP---------LGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEEESSS---------SCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeeecccc---------cchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 444432222 49999999999999731 0023599999999999999999999999998654444444444
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHH--hhCCCCCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~--~~~~~~~d~ 332 (524)
.++.||++.+|++|+|.+|.|||..+.. +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 4688999999999999999999986531 468999999999999987755 233346677
Q ss_pred hhhhHHhhhhcC-ceEEEEecC--eEeecCCHHHHHHHHHHhhc
Q 009817 333 GSEIIPAAIMEH-DVQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 333 ~~dii~~li~~~-~V~~y~~~~--~w~dIgt~~d~~~An~~l~~ 373 (524)
..++++.+++++ .+.+|.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 889999999986 566889999 79999999999999999875
No 28
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=2e-37 Score=315.46 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=193.7
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~----- 165 (524)
|++|+|||||||.||||+|||+.+||||+||+|+ |+|+|+++++.++||++|+|++++..+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 6789999999999999999999999999999999 9999999999999999999999999999999985322 10
Q ss_pred -----------CCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 009817 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (524)
Q Consensus 166 -----------~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~------- 227 (524)
....++ +++....|.. ++||++|+++++.++. .++|++++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000112 2332333322 3699999999999884 36899999999986
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEEC----CCC---cEEEEEecCCcccccccccccccccCCcccc
Q 009817 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (524)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id----~~g---~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~ 299 (524)
.|+.++++.|.+.+++.+++ ....+ .++.||++.+| ++| +|..|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~-~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEE-EECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 58999999999888775444 44332 46789999996 356 78999999964321
Q ss_pred ccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 300 ~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
..++++++|+|+|++++|..+.+ ..+. ...+..++++.+++++++.+|.++|+|+|||+|++|.+|+.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 02468999999999999886544 3232 33456799999999999999999999999999999999999983
No 29
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-37 Score=312.20 Aligned_cols=349 Identities=18% Similarity=0.303 Sum_probs=249.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~-~~~l~~hl~~~y~~~~~~~ 170 (524)
|.+++|||+|||.||||--+|.+.||||+||||+ |||+|+|++|.++|+++|+|++... ...|+..+...+ .-..+
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc-
Confidence 7789999999999999988999999999999999 9999999999999999999999873 334544443222 11111
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
. ..|++-...+. -.|||++|+.....+. .++||+++||.+.++++..++++++..++...++...
T Consensus 84 ~-~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 84 P-DYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred c-cEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 0 11333222222 1599999999988886 3799999999999999999999999877654444332
Q ss_pred cCC------C---CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHH
Q 009817 251 VGE------S---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (524)
Q Consensus 251 ~~~------~---~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l 321 (524)
... . +...+.++.++++..-..|...-. ...+.+.+..++|+..|... ..+.+.++.+|+|+.++++.|
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d~l 226 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVIDLL 226 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHHHH
Confidence 211 1 112456777777665555554332 22345677778888888763 367899999999999999855
Q ss_pred HHhhCCCCCchhhhhHHhhhhc---------------------------------CceEEEEec--CeEeecCCHHHHHH
Q 009817 322 LRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFYE 366 (524)
Q Consensus 322 l~~~~~~~~d~~~dii~~li~~---------------------------------~~V~~y~~~--~~w~dIgt~~d~~~ 366 (524)
-+. ++-.+|-.+++|.++++ -++++|... .-+..++|.-.|++
T Consensus 227 ~~~--~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~e 304 (433)
T KOG1462|consen 227 SEK--ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYME 304 (433)
T ss_pred hcC--CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHh
Confidence 332 22223444555555432 233444443 34778999999999
Q ss_pred HHH--HhhccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEe
Q 009817 367 ANM--ALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML 443 (524)
Q Consensus 367 An~--~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~ 443 (524)
+|+ .+..-.+.-.+ +....... ..++ .+++|+++|.|+ ++.|..|+||.+|.||++++|.+|++|
T Consensus 305 iN~~k~~~~l~~e~~~------~k~~~~~~--~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm 372 (433)
T KOG1462|consen 305 INRDKKLKKLCSEAKF------VKNYVKKV--ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILM 372 (433)
T ss_pred hhHHHHHHHhcccccc------ccchhhhe--eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEee
Confidence 994 44332221111 11100000 1111 378899999999 788899999999999999999999999
Q ss_pred CCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++ +.||+++.|+|||||.+|.||.++.+.||
T Consensus 373 ~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 373 DN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred cC-------------------cEecCCcceecceecccceecCCCeeeee
Confidence 99 99999999999999999999999999997
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=5.4e-37 Score=306.20 Aligned_cols=235 Identities=22% Similarity=0.370 Sum_probs=193.0
Q ss_pred EEEEeCC--CCCcccCCccCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
||||||| .||||+|||..+||||+||+|+ |||+|+|+++.+ +|+++|+|++++..+++.+|+.... ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 5899999 8999999999999999999999 999999999999 6999999999999999988885211 1122 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.+.++. +.. .+||+++++.++.+++. ...++|+|++||++++.++.++++.|+++++++|+++.+++.
T Consensus 75 ~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 233332 221 26999999999998852 124789999999999999999999999999999999988754
Q ss_pred CCCCcceEEEEC-CCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC-----
Q 009817 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP----- 327 (524)
Q Consensus 254 ~~a~~~g~v~id-~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~----- 327 (524)
+.+..||++.+| ++|+|..|.|||.... +.++++|+|+|++++|..+ ....+
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccc
Confidence 456789999998 6799999999987432 3689999999999998654 33221
Q ss_pred -------------CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 328 -------------TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 328 -------------~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
...++..++++.++++.++++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11235579999999999999999999999999999999999864
No 31
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-36 Score=317.17 Aligned_cols=381 Identities=18% Similarity=0.318 Sum_probs=283.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
...++||+||.-+-|||+|+|...|+.|+|+.|. |||+|+|++|..+|+.+++|+++-++.++++|+.+.-|.....+-
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccce
Confidence 3568999999999999999999999999999999 999999999999999999999999999999999763333322221
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHc-----CCcEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR-----DADITI 246 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~-----~ad~tl 246 (524)
.+.+... . ....+|++|.... ++...++|++++||++.+++|.++++.|+++ ++-+||
T Consensus 101 --v~ti~s~-~---------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 101 --VVTICSG-E---------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --EEEEcCC-C---------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 1222221 1 2478999987642 2344689999999999999999999999654 345777
Q ss_pred EEEEcCCCCC-CcceEEEECC-CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 247 SCAAVGESRA-SDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 247 ~~~~~~~~~a-~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
+..+.. .+. .+-.++.+|. +.++..|.+--.. ....+.+.++|--.+ ....+.++.+++|-+++++++. |+..
T Consensus 164 v~k~~s-t~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~d 238 (673)
T KOG1461|consen 164 VFKESS-TRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFTD 238 (673)
T ss_pred EEeccc-cccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhhh
Confidence 777664 222 3344566664 5788888751111 112233334443332 2334678999999999999997 4444
Q ss_pred hC--CCCCchhhhhHHhhhhcCceEEEEecC--eEeecCCHHHHHHHHHHhhccC--C---CccccCCCCCCCCCC--cc
Q 009817 325 RY--PTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKES--P---AFHFYDPKTPFYTSP--RF 393 (524)
Q Consensus 325 ~~--~~~~d~~~dii~~li~~~~V~~y~~~~--~w~dIgt~~d~~~An~~l~~~~--~---~~~~~~~~~~i~~~~--~i 393 (524)
.| +...||...+|-.-+-..+|+++.... |-..+.++.+|...+++++.+- | ...+.+.+..-+..- .-
T Consensus 239 NFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk 318 (673)
T KOG1461|consen 239 NFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYK 318 (673)
T ss_pred cccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeeccccccc
Confidence 44 345678777777666778999999875 8999999999999999999874 2 222333111111111 11
Q ss_pred CCCeEEc-Ceee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 394 LPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 394 ~p~~~i~-~~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
+|.+.+. .|.+ .++.||.|+.|+ ++.|.||+||.+|+||.+++|++|++|.+ |.||+|
T Consensus 319 ~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdn 379 (673)
T KOG1461|consen 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDN 379 (673)
T ss_pred CccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCC
Confidence 2223332 2444 368999999999 79999999999999999999999999999 999999
Q ss_pred cEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 471 TKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
|.|++|||++++.|+.|+++..+ ..+..| ++||+|-+++.+++|
T Consensus 380 c~I~~aii~d~v~i~~~~~l~~g---------~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 380 CRIDHAIICDDVKIGEGAILKPG---------SVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred ceEeeeEeecCcEeCCCcccCCC---------cEEeee-eEeCCCccccccccc
Confidence 99999999999999999999865 566655 788888888888654
No 32
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.5e-36 Score=298.47 Aligned_cols=232 Identities=26% Similarity=0.420 Sum_probs=195.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|++||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. .+ . .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EY-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-cc-c--ccCC---
Confidence 6899999999999999999999999999999 9999999999999999999999999999988885 22 1 1222
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++++...+. ...||+++++.++.++.. ..++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 73 ~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 444433222 136999999999988851 24689999999999999999999999999999999988764
Q ss_pred CCCcceEEEECC-CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009817 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (524)
Q Consensus 255 ~a~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~ 333 (524)
++.||++.+|+ +++|..+.|||..+. +.++++|+|+|++++|..+.+ ...+..
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----Ccccch
Confidence 46799999998 799999999987542 357899999999999975432 223345
Q ss_pred hhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
.++++.+++++++.+|.++|+|.||||+++|++|++.++
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999998764
No 33
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=5.1e-36 Score=304.09 Aligned_cols=235 Identities=23% Similarity=0.402 Sum_probs=189.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEecc-CchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~-~~~~l~~hl~~~y~~~~~~~ 170 (524)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++ ..+.+.+|+ +++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l-----~~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHH-----cCcccc
Confidence 6789999999999999999999999999999999 999999999999999999987664 445555554 455566
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
+. .+.+. .|.. ++||++|+..+.+++. .+++++++||+++ +.++.++++.|.++++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 52 23333 3322 3699999999999885 2568889999754 78999999999888888999988
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~- 328 (524)
++++ ++.||++.+|++|+|+.|.|||..+. ++++++|+|+|+++++.. ++...+.
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCC
Confidence 8765 56899999999999999999997542 468999999999998864 4443332
Q ss_pred -CCchhhhhHHhhhhcCceEE-EEecC-eEeecCCHHHHHHHHHHhh
Q 009817 329 -SNDFGSEIIPAAIMEHDVQA-YIFRD-YWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 329 -~~d~~~dii~~li~~~~V~~-y~~~~-~w~dIgt~~d~~~An~~l~ 372 (524)
.+-..+++++.+++++++.. +...+ +|.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 22235789999998876643 56678 4999999999999998775
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.9e-35 Score=291.92 Aligned_cols=231 Identities=23% Similarity=0.389 Sum_probs=188.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~-~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++. .+++.+|+. ++..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~-----~~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLG-----DGSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHh-----cccccC--
Confidence 6899999999999999999999999999999 9999999999999999999998765 466766664 333444
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+++....+.. ..||+++++.++.+++ .++|++++||+++ +.++.++++.|.++++++++++.+.+
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3343333321 2699999999998875 3789999999865 66799999999988889999888876
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CC
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~ 330 (524)
+ ++.||++.+|++|+|..|.|||..+. +.++++|+|+|++++|. +++...+. ..
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 46799999999999999999987542 35789999999999885 55543322 22
Q ss_pred chhhhhHHhhhhcCceEEEEec--CeEeecCCHHHHHHHHHHh
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~--~~w~dIgt~~d~~~An~~l 371 (524)
.+..++++.+++++++.++.++ ++|.||||+++|++||+.+
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 3446899999998888888876 9999999999999999865
No 35
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=2.6e-35 Score=295.40 Aligned_cols=241 Identities=22% Similarity=0.301 Sum_probs=190.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----CCc
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~-----~~~ 168 (524)
|++||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999985332 11 000
Q ss_pred c----------cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc---CHHHHHH
Q 009817 169 N----------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 235 (524)
Q Consensus 169 ~----------~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~ 235 (524)
. .+ ..+.+.. | ++.+||+++++.++.+++ .++|+|++||+++.. ++.++++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~--~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~ 143 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVR--Q-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIE 143 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEE--c-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHH
Confidence 0 01 1122222 2 124699999999998885 278999999998864 4999999
Q ss_pred HHHHcCCcEEEEEEEcCCCCCCcceEEEECC----CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEE
Q 009817 236 SHVDRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (524)
Q Consensus 236 ~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~----~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIY 311 (524)
.|++.+++ ++++.+...+++..||++.+|+ .++|..|.|||..... .+.++++|+|
T Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giy 203 (267)
T cd02541 144 AYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRY 203 (267)
T ss_pred HHHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEE
Confidence 99887776 4555565544567899999986 2589999999864221 2367899999
Q ss_pred EEeHHHHHHHHHhhCC-CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 312 VFKKDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 312 vf~~~vL~~ll~~~~~-~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
+|++++|..+.+.... ....+..++++.+++++++++|.++|+|.||||+++|++||+++.
T Consensus 204 i~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 204 VLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred EcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999998765432111 233456789999999889999999999999999999999999875
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=3e-35 Score=297.85 Aligned_cols=231 Identities=26% Similarity=0.456 Sum_probs=187.7
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~-~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++ +..+.+.+|+ +++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~l-----g~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHh-----ccccccC---
Confidence 589999999999999999999999999999 99999999999999999998886 4445555444 4555665
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
+++....|.. ++||++|++.++.++. .+++++++||++ ++.++.++++.|.+.++++++++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3444444432 3699999999999985 368889999975 5789999999999888899999988875
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCc
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 331 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d 331 (524)
+++||++.+|++|+|..|.|||..+. ++++++|+|+|+++++. +++...+. .+.
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 46899999999999999999997442 46899999999999875 45543332 223
Q ss_pred hhhhhHHhhhhcCceEEEEe-cCe-EeecCCHHHHHHHHHHhh
Q 009817 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (524)
Q Consensus 332 ~~~dii~~li~~~~V~~y~~-~~~-w~dIgt~~d~~~An~~l~ 372 (524)
+..++++.+++++++..+.+ .|+ |.|+||+++|++||..+.
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 45699999999877666666 576 999999999999998774
No 37
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=9.4e-35 Score=289.87 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=189.8
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcccC--C
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG--D 172 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~~--~ 172 (524)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.... .+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999885311 11111110 0
Q ss_pred C------------eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHc
Q 009817 173 G------------FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (524)
Q Consensus 173 ~------------~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~ 240 (524)
+ .+++.. +. .++||++++++++.++. .++|++++||++++.++.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--TG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--cC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 11 13699999999998874 378999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHH
Q 009817 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (524)
Q Consensus 241 ~ad~tl~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ 320 (524)
++++|+++.+ + +..||.+.+|+ ++|..|.|||... +.++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999887652 2 46799999985 6999999998632 25789999999999984
Q ss_pred HHHhhCCCCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 321 ll~~~~~~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
++++ ...++..++++.+++++++.+|.++|+|.||||+++|.+|+..+....
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 5543 233667799999999999999999999999999999999999887765
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=3.9e-35 Score=292.93 Aligned_cols=239 Identities=21% Similarity=0.288 Sum_probs=186.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----CCc
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~-----~~~ 168 (524)
|++||||||.||||+|||..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...| ++ .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999986332 11 000
Q ss_pred ccC-------CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc---CHHHHHHHHH
Q 009817 169 NFG-------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (524)
Q Consensus 169 ~~~-------~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~~h~ 238 (524)
.+. ...+.+....+ .+.+||++++++++.++. .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00112211112 234699999999998874 378999999998864 6999999999
Q ss_pred HcCCcEEEEEEEcCCCCCCcceEEEECC----CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEe
Q 009817 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (524)
Q Consensus 239 ~~~ad~tl~~~~~~~~~a~~~g~v~id~----~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~ 314 (524)
++++++ +++...+.+++++||++.+|+ +++|..|.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888876 555565544567899999872 3799999999953211 2357899999999
Q ss_pred HHHHHHHHHhhCCC-CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHH
Q 009817 315 KDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (524)
Q Consensus 315 ~~vL~~ll~~~~~~-~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~A 367 (524)
+++|..+.+..... ...+..++++.+++++++++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 99887664432221 234456899999999999999999999999999999875
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=4.2e-34 Score=291.64 Aligned_cols=244 Identities=23% Similarity=0.310 Sum_probs=193.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCC---
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG--- 167 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~--- 167 (524)
.+-|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++..+++.+|+...+ ++..
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 3458999999999999999999999999999999 9999999999999999999999999999998885322 2100
Q ss_pred ---cccCC-------CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--------cC
Q 009817 168 ---TNFGD-------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MD 229 (524)
Q Consensus 168 ---~~~~~-------~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--------~d 229 (524)
..+.. ....+....|. ...||++|+++++.++. .++|+|++||++++ .+
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccccc
Confidence 00000 00122222222 23699999999988874 37899999999874 78
Q ss_pred HHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECC-------CCcEEEEEecCCcccccccccccccccCCccccccC
Q 009817 230 YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302 (524)
Q Consensus 230 l~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~-------~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~ 302 (524)
+.++++.|.+.+++ ++++.++++ +..||++.+|+ +++|..|.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999888876 677777744 56899998863 3579999999974321 1
Q ss_pred CcceeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 303 PYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 303 ~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
+.++++|+|+|++++|. +++...+. .+.+..++++.++++.++.+|.++|+|.|||||++|.+|+.++.
T Consensus 210 s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 36799999999999984 66654322 33567899999999999999999999999999999999999875
No 40
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=3.6e-34 Score=279.06 Aligned_cols=219 Identities=21% Similarity=0.302 Sum_probs=181.7
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.. ..|+ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~------~~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD------SRFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc------ccCC---c
Confidence 589999999999999999999999999999 99999999999999999999999999999888853 1233 3
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHH--cCCcEEEEEEEcCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD--RDADITISCAAVGE 253 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~--~~ad~tl~~~~~~~ 253 (524)
.+....+. .+..||+++++.++.++. .++|++++||++++.++.++++.|.+ .++++++...+.+.
T Consensus 71 ~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 33332222 023699999999998875 27899999999999999999999984 55666666555443
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~ 333 (524)
.+.||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567999999999999999988752 468999999999998865432 2345
Q ss_pred hhhHHhhhhcCceEEEEecCeEeecCCHHHHHHH
Q 009817 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~A 367 (524)
.++++.+++++++.+|.++++|.||||+++|.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 6899999999999999999999999999999875
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=2.1e-33 Score=279.72 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=190.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCccc--CCC
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GDG 173 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~--~~~ 173 (524)
|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ ++....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 68999999999999999999999999999 9999999999999999999999999999999986432 1111111 111
Q ss_pred eEEEEccccCC-C--CCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 174 FVEVLAATQTP-G--ESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 174 ~V~vl~~~q~~-~--e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+.++...... . .....-..||++++++++.++. ..++|++++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222210000 0 0000012589999999998874 12789999999999999999999999999999887653
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
..+.||.+.+|++|+|..+.|||... +.++++|+|+|++++|..+ +.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cc
Confidence 24679999999999999999998643 1468999999999998644 332 44
Q ss_pred chhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhcc
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
++..++++.+++++++.+|.++|+|.||+|+++|..|+..+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 66679999999999999999999999999999999999887654
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=2.6e-33 Score=275.33 Aligned_cols=232 Identities=27% Similarity=0.414 Sum_probs=190.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+ +..|+. .
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-----~~~~~~-~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD-----GSRFGV-R 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc-----hhhcCC-e
Confidence 7899999999999999999999999999999 99999999999999999999999988888877742 122331 2
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
+.++. +. +..||+++++.++.++. .++|++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 23599999999998874 3789999999999999999999999989999998888765
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~ 332 (524)
+..||++.+|+ ++|..+.|||..+. +.++++|+|+|++++|..+ +...+. ...+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 45789888875 59999999986432 3578999999999988754 332222 2344
Q ss_pred hhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 333 ~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..++++.++++ .+|.+|.++++|.||||++||.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 56889998876 579999999999999999999999998875
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=1.2e-32 Score=267.06 Aligned_cols=223 Identities=25% Similarity=0.423 Sum_probs=184.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999999888887875322 1221 122
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
+... +. ..|++++++.++..+. .++|++++||+++..++.++++.|++.+.++++++.+..+ .
T Consensus 74 ~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 2221 11 2599999999988773 3789999999999999999999998888888888887654 3
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~di 336 (524)
..|+.+.+|++|+|..|.|||.... ++++++|+|+|++++|..+.+. ..++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 5799999998899999999977431 3688999999999998754222 33456789
Q ss_pred HHhhhhcCceEEEEecCeEeecCCHHHHHHHH
Q 009817 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 337 i~~li~~~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
++.+++++++.+|.++++|.||||++||..|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999883
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=2.2e-32 Score=264.40 Aligned_cols=217 Identities=30% Similarity=0.524 Sum_probs=181.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999998888888774221 122 1233
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++.... ..|++++++.++..+. .++|++++||++++.++.++++.|.++++++++++.+.+ ++
T Consensus 74 ~~~~~~---------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVVQEE---------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEeCCC---------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 332211 2599999999988773 489999999999999999999999999999999988776 35
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~di 336 (524)
.+|+.+.+|++|+|..+.|||.... ..++++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 6899999999899999999987542 25789999999999885 5554333345677899
Q ss_pred HHhhhhcCceEEEEecCeEeecC
Q 009817 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (524)
Q Consensus 337 i~~li~~~~V~~y~~~~~w~dIg 359 (524)
++.++++.++++|.++|+|.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.4e-31 Score=260.23 Aligned_cols=219 Identities=25% Similarity=0.463 Sum_probs=177.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+. ++..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~~~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFG-----DGSKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHC-----CccccCc-cEE
Confidence 68999999999999999999999999999 9999999999999999999999998888877764 2223331 133
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++. +. ...||+++++.+.... .++|+|++||++++.++.++++.|++.++++++++.+... .
T Consensus 74 ~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 332 21 1259999997665433 4899999999999999999999999988899988877543 3
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~di 336 (524)
..||++..|+ ++|..|.|||... .++++|+|+|+++++..+ +. .......++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHHH
Confidence 5699999986 8999999997632 467999999999998754 21 222235688
Q ss_pred HHhhhhc-CceEEEEecCeEeecCCHHHHHHHH
Q 009817 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 337 i~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
++.++++ .++.+|.++++|.||||+++|.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8888877 5799999999999999999999986
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.6e-32 Score=263.36 Aligned_cols=249 Identities=21% Similarity=0.288 Sum_probs=205.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCc--
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGT-- 168 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~-- 168 (524)
|+..+|||+|||.||||.|.|+..||-|+||.+| |+|+|+++.+..+||++|++||+.+...+.+|+...| +++..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 9999999999999999999999999999999986555 32210
Q ss_pred --cc------C--CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc---CHHHHHH
Q 009817 169 --NF------G--DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 235 (524)
Q Consensus 169 --~~------~--~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~ 235 (524)
+. . ...+++.+..|.. ++|.+|||++|..++. +|+|.|+.+|.++.. .+.+|++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHH
Confidence 00 0 1234555555543 4799999999999986 489999999999875 3899999
Q ss_pred HHHHcCCcEEEEEEEcCCCCCCcceEEE----ECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeE
Q 009817 236 SHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (524)
Q Consensus 236 ~h~~~~ad~tl~~~~~~~~~a~~~g~v~----id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GI 310 (524)
.+.+.+.. ++.+.+++.++.+.||++. .+++ .+|..+.|||+..++ .|+++..|-
T Consensus 148 ~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 99988873 6777788777788999998 4443 689999999976543 479999999
Q ss_pred EEEeHHHHHHHHHhhCCCC--CchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 311 YVFKKDVLFKLLRWRYPTS--NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 311 Yvf~~~vL~~ll~~~~~~~--~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
|+|++++|+ +|++..+.. +--.+|.|..+++++.+.+|.|+|..+|+|++..|.+|+.++..+.
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 999999998 567655542 2245688889999999999999999999999999999999998764
No 47
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=1.7e-29 Score=247.68 Aligned_cols=222 Identities=18% Similarity=0.247 Sum_probs=169.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
.||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++.. ....|+.+.+.... . .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~~---~--~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLLA---P--NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHhC---C--CCE
Confidence 48999999999999999999999999999 99999999999999999999997532 22233332221111 1 123
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++..... ..||++++++++..+. ..++|++++||++++.++.++++.|.+.+.+.++++.+.+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3221111 2599999999998874 2378999999999999999999999887777777776652 3
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHH-HHHHHHHhhC-----CCCC
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~-vL~~ll~~~~-----~~~~ 330 (524)
.+|+.+.+|++|+|..+.||+.. +.++++|+|+|+++ +|..+++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 57999999999999999988532 24679999999998 6655555421 1223
Q ss_pred chhhhhHHhhhhc-CceEEEEe-cCeEeecCCHHHH
Q 009817 331 DFGSEIIPAAIME-HDVQAYIF-RDYWEDIGTIKSF 364 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~-~~~w~dIgt~~d~ 364 (524)
.+..++++.++++ .+|++|.+ +++|.||||+++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 3457899999977 47999999 6999999999987
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=1.4e-29 Score=247.99 Aligned_cols=222 Identities=17% Similarity=0.244 Sum_probs=173.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.. + .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c------CC---eE
Confidence 69999999999999999999999999999 99999999999999999999999998888888741 1 12 55
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++++++.+..+...
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 55433211 2599999999988773 79999999999865 5677788888899988877444334
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh---hCC--CCCc
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~---~~~--~~~d 331 (524)
..++....|+ +++..+.+||..+. ...+.++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~~-~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDDA-GVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecCc-cceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 4566554443 78999999986542 13578999999999997765432 111 2456
Q ss_pred hhhhhHHhhhhc--CceEEEEecCeEeecCCHHHHHHHH
Q 009817 332 FGSEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 332 ~~~dii~~li~~--~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
+..++++.++++ .+++.|.. ++|.||||++||.+|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 678999999884 45555555 8999999999999874
No 49
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=6.2e-30 Score=249.05 Aligned_cols=204 Identities=17% Similarity=0.287 Sum_probs=157.3
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~~~~ 173 (524)
++|||||||.|+||+|||..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ ++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 4799999999999999999999999999999 9999999999999999999999999999999986433 221 11011
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHH-----cCCcEEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~-----~~ad~tl 246 (524)
.+++....+ ..||+++++... ..+ .++|++++||++++.++.++++.|++ +++++|+
T Consensus 78 ~i~~~~~~~---------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSED---------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCCC---------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 244443221 258999987543 222 37899999999999999999999998 4788999
Q ss_pred EEEEcCCCC----CCcceEEEECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 247 SCAAVGESR----ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 247 ~~~~~~~~~----a~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
++.++++++ ..+++++.+|++ ++|..|.|||..+......+...++.-.+.. ..++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 888876644 224678888866 8999999999876543333444444444332 3468999999999999864
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=2.6e-29 Score=241.56 Aligned_cols=198 Identities=47% Similarity=0.782 Sum_probs=160.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcccCCCeE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~~~~~V 175 (524)
|||||||.||||+|+|+.+||||+||+|+||||+|+++++.++|+++|+|++++..+++.+|+...+ ++. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 5899999999999999999999999999879999999999999999999999999999988875221 111 1111235
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~ 255 (524)
.++...+.. .+.|.+||+++++.++.++++ ...++|++++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 565543311 124568999999999998852 12478999999999999999999999998888887764
Q ss_pred CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC-CCCchhh
Q 009817 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGS 334 (524)
Q Consensus 256 a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~-~~~d~~~ 334 (524)
+++|+|+|++++|..+++...+ ...++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 1789999999999777765332 3457788
Q ss_pred hhHHhhhhcCceEEEEecCeEeec
Q 009817 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (524)
Q Consensus 335 dii~~li~~~~V~~y~~~~~w~dI 358 (524)
|+++.++++.++.+|.++|+|.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=2.9e-27 Score=238.54 Aligned_cols=235 Identities=17% Similarity=0.285 Sum_probs=169.0
Q ss_pred eeEEEEeCCCCCcccCCcc-CCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHHhhhcCCcccC
Q 009817 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~~ 171 (524)
|++||||||.||||+|||. .+||+|+|++|.+|||+++++++.+. ++++|+|+|++...+ +.+++. . .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~-----~---~- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLP-----E---G- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHh-----h---c-
Confidence 6899999999999999996 79999999999339999999999998 599999999976544 333332 1 0
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHH---cCCcEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADITI 246 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~---~~ad~tl 246 (524)
...+.++.+.. .+||++++..++.++.. ..+.+.++|++|||++. .+|.++++.|.+ .++.+|+
T Consensus 72 ~~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~ 140 (274)
T cd02509 72 LPEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTF 140 (274)
T ss_pred CCCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 01245554322 25999999999888752 12357899999999886 567777766553 5667777
Q ss_pred EEEEcCCCCCCcceEEEECCCC-----cEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHH
Q 009817 247 SCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (524)
Q Consensus 247 ~~~~~~~~~a~~~g~v~id~~g-----~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l 321 (524)
.+.+... .+.||+++.+++. +|..|.|||....++.+. ....+++++|+|+|+++.|...
T Consensus 141 gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~ 205 (274)
T cd02509 141 GIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEE 205 (274)
T ss_pred EeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHH
Confidence 7777543 3689999998763 899999999865432211 0124689999999999988887
Q ss_pred HHhhCCCC-------------C---chhhhhHHh---------hhhc-CceEEEEecCeEeecCCHHHH
Q 009817 322 LRWRYPTS-------------N---DFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSF 364 (524)
Q Consensus 322 l~~~~~~~-------------~---d~~~dii~~---------li~~-~~V~~y~~~~~w~dIgt~~d~ 364 (524)
++...|.. . .+..+.++. ++++ .++.+++.+..|-|+|+++++
T Consensus 206 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~~ 274 (274)
T cd02509 206 LKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDAL 274 (274)
T ss_pred HHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCcccC
Confidence 77654421 0 111233332 1222 678888888899999998763
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=9.9e-26 Score=220.20 Aligned_cols=221 Identities=22% Similarity=0.332 Sum_probs=172.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||++ .+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999986 589999999999 99999999999999999999999987777666531 22 44
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-c-ccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++.... ..|+++++++++..+++ ..+.|+++.||+. + ..++.++++.|.+.++++++.+.+..+
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 443221 25999999999988851 2478999999993 3 567899999998877888888777654
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---CCCc
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~~~d 331 (524)
+..|+.+..|++|+|..+.|||...... ...+.+++|+|+|+++.|..+++.... ....
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 4679988888889999999987532100 012578999999999987777765432 2345
Q ss_pred hhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHH
Q 009817 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (524)
Q Consensus 332 ~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~ 364 (524)
+..++++.++++ .+|++|.++|| |+.|+|+.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 57999999876 7778888764
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=3.4e-26 Score=222.82 Aligned_cols=204 Identities=19% Similarity=0.311 Sum_probs=158.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
++|||||||.|+||+|+|...||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.++.. ...+ ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~-~~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSS-LSSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccc-ccCC-ce
Confidence 5899999999999999999999999999999 9999999999999999999999999999998887544210 0111 12
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHH--HHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~--h~~~~ad~tl~~~~~~ 252 (524)
+.+....+. ...||+++++++++++. ++|++++||++++.++.+++++ +...++++++++....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444433332 23699999999988774 7899999999999999999976 5556777777766544
Q ss_pred CCC-------CCcceEEEECCC---CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 253 ~~~-------a~~~g~v~id~~---g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
... +.+++++.+|++ .++..+.|+|.... .+.+...++.-.|.. ..++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~~-~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPNV-TIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCCE-EEEcCcccccEEEecCcCC
Confidence 322 467899999988 58888888887543 233455556655543 4578999999999999864
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=3e-24 Score=231.58 Aligned_cols=240 Identities=17% Similarity=0.295 Sum_probs=165.8
Q ss_pred eeEEEEeCCCCCcccCCccC-CCccceeecC-cchhHHHHHHHHHhcCCCeEEEEeccCchh-HHHHHHHhhhcCCcccC
Q 009817 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgG-k~pLId~~l~~l~~sGi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~~ 171 (524)
|.+||||||.||||+|||.. +||+|+|+.| + |||+++++.+...++++++|+++..... +.+.+ +. ++
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l-~~-------~~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQL-RE-------IG 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHH-HH-------cC
Confidence 57999999999999999996 8999999977 7 9999999999999999999999864432 22222 12 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc--CHHHHHHHH---HHcCCcEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQSH---VDRDADITI 246 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~--dl~~ll~~h---~~~~ad~tl 246 (524)
.....++.+.. .+|||+++..+..++.... ...+.++|++||+++.. +|.++++++ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11123443322 2599999998776663200 12345999999988753 488888765 344555555
Q ss_pred EEEEcCCCCCCcceEEEECC------CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHH
Q 009817 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (524)
Q Consensus 247 ~~~~~~~~~a~~~g~v~id~------~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ 320 (524)
...+..+ .+.||++..|+ .++|..|.|||....++.+. ....+++++|||+|+++.|..
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l-------------~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYL-------------ESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHH-------------hcCCeEEEeeEEEEEHHHHHH
Confidence 5554433 36899999984 26899999999865432111 012478999999999887777
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------hhhhc-CceEEEEecCeEeecCCHHHHHHHH
Q 009817 321 LLRWRYPTS-----------------NDFGSEIIP---------AAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 321 ll~~~~~~~-----------------~d~~~dii~---------~li~~-~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
.++...|.. ..+..++++ .++++ .++.+...+..|.|+|++++|.+.-
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 666543310 111134455 22333 5789999999999999999999863
No 55
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=2.2e-24 Score=209.69 Aligned_cols=201 Identities=21% Similarity=0.311 Sum_probs=147.8
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~~~~ 173 (524)
|+|||||||.|+||+|+|...||+|+||+|+ |||+|+++++.++|+++|+|++++.. +.+..++.+..+.. .. ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~--~~-~~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNL--KQ-KL 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhccccc--Cc-ce
Confidence 5899999999999999999999999999999 99999999999999999999999765 34555553211111 00 11
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.+.+.... ...||+++++.++..+. ++|++++||++++.++.++++.|++.++.+|+++.+...
T Consensus 77 ~~~~~~~~---------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTIVLD---------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEecCC---------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 12222211 13699999999987763 789999999999999999999999999999998887542
Q ss_pred C----------C-CCcceEEEECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 254 S----------R-ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 254 ~----------~-a~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
. + ...+.++.+|++ +++..+....... +...++..++.-.|+. ..++++.++++|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 1 1 235677777764 6777766532221 2233345555555533 4478899999999998764
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=201.27 Aligned_cols=234 Identities=17% Similarity=0.198 Sum_probs=159.7
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.+.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.++|+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVE-A-------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHH-H-------cC--
Confidence 3679999999999993 6999999999 999999999999999999998864 55555553 1 22
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++...+. ++.||++... +...+. ....+.+++++||+ +.+ ..+.++++.|..+++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~-~~~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAE-AAAKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHH-HHHhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233332221 2347766443 333331 01246799999999 554 568999998887767777776665
Q ss_pred CC----CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 252 ~~----~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
.+ ..++.++++ +|++|+|+.|.|||..+.... .++. ...+++.++|+|+|++++|..+.+. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 22 234557765 899999999999995332100 0000 0125889999999999999876653 22
Q ss_pred CCCchh--hhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHh
Q 009817 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 328 ~~~d~~--~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l 371 (524)
...+.. .++++.+-++.+|+++.+++ +|.|||||+||..|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 11223233446899999996 999999999999999765
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.90 E-value=3.2e-22 Score=197.19 Aligned_cols=226 Identities=17% Similarity=0.267 Sum_probs=156.9
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVE-S-------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHH-H-------cC--
Confidence 579999999999994 6999999999 9999999999998 99999999864 45555543 1 22
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHc-CCcEEEEEEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~-~ad~tl~~~~ 250 (524)
+.++...+. +..||++ +..++..+. ...+.||+++||+ ++ ..++..+++.|.+. +.++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 334332221 1358875 555555443 1136799999997 44 45789999988776 6788888877
Q ss_pred cCCCC----CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 251 ~~~~~----a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
.+++. ...|+ +.+|++|+|..|.+||...... |.. ....++++|+|+|++++|..+.+..
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~~- 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAALP- 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhCC-
Confidence 65421 23344 5577789999999876422100 000 0136889999999999998765431
Q ss_pred CCCCchhhhhHH--hhhhc-CceEEEEecCeEeecCCHHHHHHHHH
Q 009817 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (524)
Q Consensus 327 ~~~~d~~~dii~--~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~ 369 (524)
....+ ..+.++ .++++ .+++++..+++|.||||++||..|++
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 123333 34554 56999999999999999999999974
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=3.3e-22 Score=191.48 Aligned_cols=224 Identities=16% Similarity=0.241 Sum_probs=150.2
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEe-ccCchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt-~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|..|+|||||||.|+||+| ..||+|+.++|+ +||+|+|++|.+.|++++++|+ +|..+.+.+++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 5678999999999999999 799999999999 9999999999999999999999 888877766664 22 22
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+++...... ..+|+.++..+++.+. +.|++++|||+|...+ ++...+..+. ++.+..
T Consensus 71 ---~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d~ 129 (239)
T COG1213 71 ---NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVDR 129 (239)
T ss_pred ---ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEec
Confidence 14444333221 1367999999998886 6799999999998664 3333333332 233322
Q ss_pred cCCCCC-CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 251 VGESRA-SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 251 ~~~~~a-~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
.+.... .+-..++ +++|++..+..+-+.. +..++|++.|+.+++..+.+-.....
T Consensus 130 ~~~~~~~~ea~kv~-~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~~e~~ 185 (239)
T COG1213 130 RPRYVGVEEATKVK-DEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELLVERS 185 (239)
T ss_pred cccccccCceeEEE-ecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHHhhhh
Confidence 211001 1222334 4689999887655522 45799999999998766544332211
Q ss_pred CchhhhhHHhhhhcCceEEEEe-----cCeEeecCCHHHHHHHHHHhhcc
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIF-----RDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~-----~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
.. .+....+...+.+-.. ...|.||+||+|+.+|...+...
T Consensus 186 ~~----~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 186 EY----DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred hH----HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11 1222222222222222 24699999999999999887643
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.87 E-value=1.1e-20 Score=186.21 Aligned_cols=225 Identities=17% Similarity=0.296 Sum_probs=152.5
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
.+.+||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~-------~~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-A-------FG- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-H-------cC-
Confidence 3679999999999993 5999999999 9999999999998 89999999864 55655553 2 22
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCC-cEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~a-d~tl~~~ 249 (524)
++++...+. +..|+++ +..+...+ ..+.|+++.||. +...++.++++.|.+.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~~-~~~a~~~~------~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTDR-LAEVMLKI------EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccHH-HHHHHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 223222111 1247764 55554443 247899999997 446679999998876543 5555665
Q ss_pred EcCC-CC---CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 250 AVGE-SR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 250 ~~~~-~~---a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
+++. .+ +..+++ .++++|++..|.|+|...... . ....++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~--------------~-~~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRD--------------G-ESARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCC--------------C-CCCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5543 11 334444 456679999999765321100 0 0013578999999999999864 321
Q ss_pred CCCC-Cchhh-hhHHhhh-hcCceEEEEecCeEeecCCHHHHHHHHHH
Q 009817 326 YPTS-NDFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (524)
Q Consensus 326 ~~~~-~d~~~-dii~~li-~~~~V~~y~~~~~w~dIgt~~d~~~An~~ 370 (524)
.... .++.. +++ .++ ...++++|..+++|.||||++||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1111 11222 455 454 44679999999999999999999999864
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.85 E-value=1.7e-20 Score=201.21 Aligned_cols=241 Identities=17% Similarity=0.275 Sum_probs=160.0
Q ss_pred eeEEEEeCCCCCcccCCccC-CCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHH-HHHHHhhhcCCcccCC
Q 009817 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN-RHIARTYFGNGTNFGD 172 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~-~hl~~~y~~~~~~~~~ 172 (524)
|.+||||||.||||||+|.. +||||+|++|..|||+++++.+...++.+.+|+|+.....+. +.+. . +..
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~-------~~~ 77 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-Q-------LNK 77 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-h-------cCC
Confidence 79999999999999999997 799999996533999999999998888888888887544332 2221 1 110
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC--HHHHHHHHHH---cCCcEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHVD---RDADITIS 247 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h~~---~~ad~tl~ 247 (524)
....++.+... .+||.|+..+..++.........-++++++||++... |.+.++...+ .+.-+|+.
T Consensus 78 ~~~~ii~EP~~---------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~G 148 (478)
T PRK15460 78 LTENIILEPAG---------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFG 148 (478)
T ss_pred ccccEEecCCC---------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 00134443332 5899998877766643100113578899999988542 5555554332 23333333
Q ss_pred EEEcCCCCCCcceEEEECCC---------CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 248 CAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 248 ~~~~~~~~a~~~g~v~id~~---------g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
..|... .+.||+++.++. .+|..|.|||....++++.-. ..|++|+|||+|+.+.+
T Consensus 149 I~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~-------------G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 149 IVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVAS-------------GEYYWNSGMFLFRAGRY 213 (478)
T ss_pred cCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHc-------------CCEEEecceeheeHHHH
Confidence 333222 268999998742 269999999998776544321 34899999999999988
Q ss_pred HHHHHhhCCC--------------CCch--h-hhhHH--------hhhh-c-CceEEEEecCeEeecCCHHHHHHH
Q 009817 319 FKLLRWRYPT--------------SNDF--G-SEIIP--------AAIM-E-HDVQAYIFRDYWEDIGTIKSFYEA 367 (524)
Q Consensus 319 ~~ll~~~~~~--------------~~d~--~-~dii~--------~li~-~-~~V~~y~~~~~w~dIgt~~d~~~A 367 (524)
+..++...|. ..++ . .+.++ .++- + .++.+.+.+..|-|+|+++++.+.
T Consensus 214 l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 214 LEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 7766654431 0010 0 12222 2222 2 568888888889999999999886
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=3.2e-19 Score=177.66 Aligned_cols=245 Identities=18% Similarity=0.281 Sum_probs=163.2
Q ss_pred eeEEEEeCCCCCcccCCc-cCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT-~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
|..||||||.|||||||+ +..||+++++.|...|++.++.++.. .+.+++++||+.....+. .++.-+-+.+..
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v---~eql~e~~~~~~- 77 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIV---KEQLPEIDIENA- 77 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHH---HHHHhhhhhccc-
Confidence 689999999999999996 46999999996533999999999998 689999999987654321 122211111110
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC--HHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h~~~~ad~tl~~~~ 250 (524)
. .++-+... +.||.|+..+.-.+.. ..+..-++|+++||+.... |.+.++...+.-....+++..
T Consensus 78 ~--~illEP~g---------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfG 144 (333)
T COG0836 78 A--GIILEPEG---------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFG 144 (333)
T ss_pred c--ceEeccCC---------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 1 14433322 4899999877655542 1233469999999988653 777777554322122344444
Q ss_pred cCCCCC-CcceEEEECC------CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHH
Q 009817 251 VGESRA-SDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 251 ~~~~~a-~~~g~v~id~------~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
..+.++ +.||+++..+ -.+|.+|.|||....++++.-. ..+++++|+|+|+...+.+.++
T Consensus 145 I~Pt~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~s-------------G~y~WNSGmF~Fra~~~l~e~~ 211 (333)
T COG0836 145 IPPTRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVES-------------GEYLWNSGMFLFRASVFLEELK 211 (333)
T ss_pred cCCCCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHc-------------CceEeeccceEEEHHHHHHHHH
Confidence 433333 6899998854 2469999999998776544321 3489999999999998877666
Q ss_pred hhCCC-----------CCch--h---hhh--------HHhhhh--cCceEEEEecCeEeecCCHHHHHHHHH
Q 009817 324 WRYPT-----------SNDF--G---SEI--------IPAAIM--EHDVQAYIFRDYWEDIGTIKSFYEANM 369 (524)
Q Consensus 324 ~~~~~-----------~~d~--~---~di--------i~~li~--~~~V~~y~~~~~w~dIgt~~d~~~An~ 369 (524)
...|. ..+. . .+. +..++- ..++...+.+-.|-|+|++.++++...
T Consensus 212 ~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 212 KHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred hhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 54432 0010 0 111 222232 367888888889999999999987643
No 62
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=5.8e-18 Score=156.17 Aligned_cols=218 Identities=16% Similarity=0.220 Sum_probs=150.2
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.|||||||.||||.|||...||+|+.|.|+ |||+++++.|.++||++|+|||||..+++ +++...| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6899999999999999999999999999999 99999999999999999999999998875 5676443 3
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEE-EEEEEcCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADIT-ISCAAVGE 253 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~t-l~~~~~~~ 253 (524)
|+++....-. .-....++..|+++++ +.-|+.+|.....++ +......-. .++....
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~- 126 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG- 126 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC-
Confidence 6666543221 1256688889998884 778899999876554 111111111 1222221
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHH---HHHHHHhhCCC--
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPT-- 328 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~v---L~~ll~~~~~~-- 328 (524)
..+-=++..+.+|+|+.+.---. ..+..+|+..|+... +..+++..+-.
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 12223567788899998764222 246788999999864 44455554322
Q ss_pred -CCchhhhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHhh
Q 009817 329 -SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 329 -~~d~~~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l~ 372 (524)
..-|..++.-.-+++.+++.-..++ .-+++++.++|......++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 1123334554555555666555543 4778999999988877644
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.74 E-value=2.7e-16 Score=160.00 Aligned_cols=236 Identities=16% Similarity=0.160 Sum_probs=155.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
..+.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+| +..+.+.+.+++. . ++
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~-~-------~~- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCR-G-------FG- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHH-H-------cC-
Confidence 35789999999999993 5999999999 99999999999876544433 3355667765553 1 22
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEE--
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC-- 248 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~-- 248 (524)
++++...+. +..||+++ ..++..++ ...+.++++.||. +.. ..+.++++.+.+. +++++++
T Consensus 109 --v~vi~~~~~-------~~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~ 173 (293)
T PLN02917 109 --ADVIMTSES-------CRNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAV 173 (293)
T ss_pred --CEEEeCCcc-------cCCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEe
Confidence 233321111 12378776 46766664 1247899999999 333 4689999988654 4444432
Q ss_pred EEcCCCCCCcceEEE--ECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 249 AAVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~--id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
.+...+++.+||.++ .|++|+++.|..++-.....+ .++ .....+.++|+|.|+.+.|.. +....
T Consensus 174 ~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~--~~~i~~~n~Giy~f~~~~L~~-l~~l~ 240 (293)
T PLN02917 174 TSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVN--PQFPYLLHLGIQSYDAKFLKI-YPELP 240 (293)
T ss_pred eecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------ccc--cccceEEEEEEEEeCHHHHHH-HHcCC
Confidence 333334467899886 788899887775432111000 000 112368899999999999884 44322
Q ss_pred C---CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhcc
Q 009817 327 P---TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 327 ~---~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
+ ..+.+.++++ .+-++.+|.++..+.....|+|++||..|+..+.++
T Consensus 241 ~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 241 PTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2 2455667766 333346898888876677999999999999987544
No 64
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.60 E-value=4.8e-14 Score=138.13 Aligned_cols=218 Identities=16% Similarity=0.124 Sum_probs=141.0
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCc-hhHHHHHHHhhhcCCccc
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~ 170 (524)
..+.+||||||.|+||. ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+ .+... .
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~----~~~~~---~ 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAE----LLLAK---D 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHH----Hhhcc---C
Confidence 45789999999999994 3479999999999 99999999999865 899999998754 22222 11111 0
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~ 248 (524)
..+.++. .. .+.+++++.++..+. ..+.++++.||. +.. ..+.++++.+.+.+ ..+.+
T Consensus 71 --~~~~~~~--~~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~ 130 (227)
T PRK00155 71 --PKVTVVA--GG---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILA 130 (227)
T ss_pred --CceEEeC--Cc---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEE
Confidence 1133332 11 246889998887763 246899999998 333 45899999876653 33444
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.+..+ .+.. ++++|.+..+.+ ... ....-+.|.|+.+.|.+++......
T Consensus 131 ~~~~~----~~~~--v~~~g~~~~~~~---r~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~ 179 (227)
T PRK00155 131 VPVKD----TIKR--SDDGGGIVDTPD---RSG----------------------LWAAQTPQGFRIELLREALARALAE 179 (227)
T ss_pred Eeccc----cEEE--EcCCCceeecCC---hHH----------------------heeeeCCccchHHHHHHHHHHHHhc
Confidence 44432 1222 255566655422 111 1122247999999988877653322
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..+..|....+.+ ..++..+..+..+.+|+|++||..|+..+..
T Consensus 180 -~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 180 -GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred -CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 2223333322222 2567777766678899999999999876643
No 65
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.60 E-value=5.1e-14 Score=136.84 Aligned_cols=210 Identities=14% Similarity=0.108 Sum_probs=139.5
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHHhhhcCCcccCCCe
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+||||||.|+||.. ..||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+..++ +. . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~-----~~---~--~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYL-----VA---R--AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHh-----hc---C--Cc
Confidence 79999999999963 369999999999 9999999999998 8999999998754 2332222 11 0 01
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++. .. .+..++++.++..++ ..+.++++.||. +.. ..+..+++.+.+. +..+++.+..
T Consensus 68 ~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA 129 (217)
T ss_pred EEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc
Confidence 33332 11 134578888876651 247899999998 444 4578888877653 3444454443
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
.++..+|++|.+..+.++... ....+ .|.|+...|.+++....... .+
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~-~~ 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEG-FE 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcC-CC
Confidence 234555667777776663211 22333 69999999988776432222 22
Q ss_pred hhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHH
Q 009817 333 GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (524)
Q Consensus 333 ~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~ 370 (524)
..|....+.. ..++..+..+..+.+|+|++||..|+..
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 2333333322 3578777777777899999999988754
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.59 E-value=1.3e-13 Score=136.41 Aligned_cols=229 Identities=15% Similarity=0.193 Sum_probs=144.6
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||+|+|.|+||. +|+|++++|+ |||+|+++++.++++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999993 7999999999 999999999999899999999864 44544442 2 22 22
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++...+. ...|+. .+..+...+.. ...+.++++.||. +.. ..+.++++.+.+.+.+++.++.+..+.
T Consensus 62 ~v~~~~~-------~~~Gt~-r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKH-------HNSGTE-RLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCC-------CCChhH-HHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 2211111 012443 33333333320 1236788899998 444 457889988866567777777776542
Q ss_pred CC---CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 255 ~a---~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
.. .+...+..|.+|+...|...+-...-..+ ...-.|+. ..++...|+|.|++++|.++.......-+.
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~~~~le~ 202 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWKPCVLEE 202 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCCCCcccc
Confidence 11 22344455778888888765332110000 00111221 236779999999999999877653221111
Q ss_pred h-hhhhHHhhhhcCceEEEEecCe-EeecCCHHHH
Q 009817 332 F-GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (524)
Q Consensus 332 ~-~~dii~~li~~~~V~~y~~~~~-w~dIgt~~d~ 364 (524)
. .-|.+..+-.+.+|.....+.. -..|+|++|+
T Consensus 203 ~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 203 IEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1245666666788999888765 4599999997
No 67
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.56 E-value=9.9e-14 Score=134.61 Aligned_cols=212 Identities=17% Similarity=0.187 Sum_probs=140.8
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
.+||||||.|+||++. .||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+ .+. ..
T Consensus 2 ~~vILAaG~s~R~~~~---~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~-----~~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGAD---IPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KY-----GLS-KV 70 (218)
T ss_pred EEEEECCcccccCCCC---CCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hc-----ccC-CC
Confidence 5899999999999752 79999999999 99999999999976 99999999886654433321 11 011 11
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++... .+..++++.++..++. ...+.++++.||+ +.. ..+.++++.+.+.++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3443221 1457889988877631 1347899999998 334 458999998865443 34444433
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
+ ++...|++|.+..+.+..+ -....++ ++|+.+.|.+++....... .+
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~~-~~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEEG-EE 182 (218)
T ss_pred c------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhcC-CC
Confidence 2 2344677888888776322 1345666 9999999988886554332 23
Q ss_pred hhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHH
Q 009817 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (524)
Q Consensus 333 ~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~ 366 (524)
..|....+.+. .++..+.-+..-+||+|++||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 34443333222 46777665555669999999954
No 68
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.56 E-value=9.8e-15 Score=143.48 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=32.1
Q ss_pred chhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
+| .|.++.++.++ ++.++|||.|+ ++|++||++++...
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcce
Confidence 44 47788888766 88899999999 99999999999764
No 69
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.54 E-value=4.4e-13 Score=130.30 Aligned_cols=214 Identities=19% Similarity=0.240 Sum_probs=137.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+.+||||||.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. .+ +.
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~-~~-------~~- 63 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVAR-KY-------GA- 63 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHH-Hh-------CC-
Confidence 579999999999993 4999999999 99999999999987 788888773 445554442 11 10
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.+.......++ ..|+.++++.++..++.. ....+.++++.||. +....+.++++.+.+.+++.++.+.+.
T Consensus 64 ~~~~~~~~~~~~~-----~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 64 EVPFLRPAELATD-----TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred CceeeCChHHCCC-----CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 0112211111000 138899999998877521 01237899999999 444678999999988778877777665
Q ss_pred CCCCCCcceEEEECCCC-cEEEEEec--CCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 252 GESRASDYGLVKIDNMG-RIAQFAEK--PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g-~V~~~~EK--p~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.+. .-++.. .+++| .+..+.++ +...+. ...+..++|+|+++++.|.+.
T Consensus 138 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~q~~------------------~~~~~~n~~~y~~~~~~~~~~------- 189 (223)
T cd02513 138 HRF--PWRALG-LDDNGLEPVNYPEDKRTRRQDL------------------PPAYHENGAIYIAKREALLES------- 189 (223)
T ss_pred CcC--cHHhee-eccCCceeccCcccccCCcCCC------------------hhHeeECCEEEEEEHHHHHhc-------
Confidence 442 123232 22333 22222111 111110 023567889999999977531
Q ss_pred CCchhhhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHH
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMA 370 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~ 370 (524)
. . .+ ..++..|..+. .-.||+|++||..|...
T Consensus 190 ~-~----~~-----g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 190 N-S----FF-----GGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred C-C----cc-----CCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 0 0 01 45787887776 48999999999988653
No 70
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.53 E-value=4.3e-13 Score=140.79 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=138.6
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|.++.+||||||.|+||. ...||+++|++|+ |||+|+++++.+++ +++|+|++++....+.+.+ .. .+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~----~~---~~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKA----LP---EI 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHh----cc---cC
Confidence 566889999999999994 3589999999999 99999999999987 7999999987654433222 11 11
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl~~ 248 (524)
. .+.++... .+..++|+.++..++ .+.+++..||. +... .+..+++...+ .+..+.+
T Consensus 72 ~--~v~~v~gG-----------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVTGG-----------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPA 130 (378)
T ss_pred C--eEEEeCCC-----------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEE
Confidence 1 13333211 246789999987764 26788889986 4443 46777776654 3567777
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.++.++ ..|+...+|. ..+..+ ++|.... .+.+.... ..
T Consensus 131 ~pv~Dt--ik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~----~~ 169 (378)
T PRK09382 131 LPVADT--LKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAA----DG 169 (378)
T ss_pred EEeccC--cEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHH----hC
Confidence 787663 3465445543 355444 6776442 11122111 11
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..+ ..|..+.+.. ..+|..+.-+..|.+|+||+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 122 2344444433 3688888888899999999999999987754
No 71
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.53 E-value=9e-14 Score=132.11 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=94.2
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||+||||++ .||+|+|++|+ |||+|+++++.++++++|+|+++++.+.+..|+...+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999999999999999988777766664211
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--ccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+.. + . -.|.+.++..++..+. ..++|++++||+.+ ...+..+++.+...+.+....+.+
T Consensus 65 ~~~~~-~--~-------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 KDYKN-A--S-------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred cEEEe-c--C-------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11221 1 1 1477788887765432 24799999999854 456888999887666555444433
No 72
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.53 E-value=1.2e-13 Score=119.26 Aligned_cols=103 Identities=35% Similarity=0.570 Sum_probs=90.4
Q ss_pred CeEEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe
Q 009817 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (524)
Q Consensus 396 ~~~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~ 474 (524)
|++|+ +++|.+++||++|.|+++.|++|+|+++++|+++++|.+++++++ +.||.++.++
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 35554 477889999999999989999999999999999999999999998 8999999999
Q ss_pred eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEe
Q 009817 475 NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATI 518 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i 518 (524)
+|+|+++++||+++.+.+....++ .++.+...|+++|++++.+
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDR-ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCccccc-ccceEcCCeEEEEecccCC
Confidence 999999999999999998853333 4667778999999998754
No 73
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.52 E-value=3.7e-13 Score=127.36 Aligned_cols=119 Identities=13% Similarity=0.228 Sum_probs=88.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+..++. . .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~----~---~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLA----N---HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc----c---CCC---eE
Confidence 7999999999997 48999999999 9999999999999999999999987665443332 1 122 45
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-cCHHHHHHHHHHcCCcE
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADI 244 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~ 244 (524)
++.... |..|++++++.++.+ . ...+.++++.||+- +. ..+..+++.+...+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 543221 225889999988762 1 13478999999993 33 45788888876655543
No 74
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.52 E-value=1.1e-13 Score=127.81 Aligned_cols=121 Identities=19% Similarity=0.304 Sum_probs=93.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||||||.|+||. .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++..++. .++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 6999999999996 49999999999 999999999999999999999988 34443332 122 45
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
++..... ..|++++++.++..+. ..+.|++++||+.+ . ..+..+++.+.+.++++.+...
T Consensus 62 ~v~~~~~--------~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 62 VVVDPEP--------GQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEE-STS--------SCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEeccc--------cCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 5543321 2599999999987762 35999999999954 4 4579999998877777655443
No 75
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.50 E-value=1e-12 Score=129.15 Aligned_cols=218 Identities=15% Similarity=0.121 Sum_probs=136.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHHhhhcCCcccCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~~~ 172 (524)
+.+||||||.|+||. ...||+|++++|+ |||+|+++++.++ .+++|+|+++..... +.+.+ +.| .+..
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~-~~~-----~~~~ 72 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLM-KQL-----NVAD 72 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHH-Hhc-----CcCC
Confidence 678999999999995 3479999999999 9999999999986 589999999764322 22222 222 1111
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..++++... .+..++++.++..++ ..+.++++.||. +... .+.++++.+.+.++ .+.+.+
T Consensus 73 ~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~ 134 (230)
T PRK13385 73 QRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVE 134 (230)
T ss_pred CceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEe
Confidence 124444211 133588888887764 235678889998 4444 47888888776554 333333
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
..+ .++...+|.+....+ +. ..+..-+.|.|+.+.|.+..+......
T Consensus 135 ~~d-------ti~~~~~~~~~~~i~--r~-----------------------~~~~~qtpq~f~~~~l~~~~~~~~~~~- 181 (230)
T PRK13385 135 VKD-------TVKRVKDKQVIETVD--RN-----------------------ELWQGQTPQAFELKILQKAHRLASEQQ- 181 (230)
T ss_pred ccc-------eEEEEcCCeeEeccC--HH-----------------------HHhhhcCCceeeHHHHHHHHHHHHhcC-
Confidence 322 122223354433221 11 123334579999988877665432222
Q ss_pred chhhhhHHhhh-hcCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 331 DFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 331 d~~~dii~~li-~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
.+..|....+. ...+|..+.-+.....|+|++|+..|...+..
T Consensus 182 ~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 182 FLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred CCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 22334232232 23677877777788999999999999877643
No 76
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.45 E-value=3.9e-12 Score=117.07 Aligned_cols=110 Identities=23% Similarity=0.362 Sum_probs=86.3
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||+||||.- .-|||++++|+ |||+|+++.+.+ .+++|++.+..+......|+... +
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 5699999999999972 45999999999 999999999988 88999999999998888887522 2
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccC-HHHHHHHHH
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHV 238 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~ 238 (524)
++++. +++ .|--.-++.++..+. .++|++++|+.+ +.. +..+++.+.
T Consensus 64 v~vi~---tpG-------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPG-------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCC-------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 66664 333 266677777776664 599999999955 433 566666654
No 77
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.44 E-value=9.8e-13 Score=123.73 Aligned_cols=120 Identities=19% Similarity=0.344 Sum_probs=89.7
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++.++++++|+|++++....+..++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4689999999999975 8999999999 9999999999999999999999987654433221 122
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCc
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDAD 243 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad 243 (524)
+.++.... +..|++++++.++..+.. ..+.++++.||+ +. ...+..+++.+...+++
T Consensus 64 ~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33333222 125999999999877641 347899999999 33 34578888877654443
No 78
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.42 E-value=4.3e-12 Score=119.57 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=84.1
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+... +++|+|++++..+. . . .++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~-------~~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-A-------LLG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-h-------hcC---
Confidence 4689999999999973 9999999999 9999999999988 89999999886543 1 1 111
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccc-CHHHHHHHHHHcCCcE
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRM-DYMDFIQSHVDRDADI 244 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~-dl~~ll~~h~~~~ad~ 244 (524)
+.++.... |..|..++|+.++..++ .+.++++.||+- ... .+..+++.+ ..+.++
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 33443221 23599999999987663 479999999994 343 467777766 334443
No 79
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.40 E-value=1.5e-11 Score=117.42 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=82.5
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|..|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 456899999999999995 268999999999 99999999998 78999999987643211 1 1 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDR 240 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~ 240 (524)
+.++..... +..|+..+|+.++...+ .+.++++.||+ +... .+..+++.+.+.
T Consensus 63 ---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 63 ---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred ---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 233322111 12588899998876542 47899999999 4454 467777765433
No 80
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.36 E-value=3.5e-11 Score=113.90 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+.+||||||.|+||. ..||+|+|++|+ |||+|+++++.. ++++|+|+++...+. +.. . .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~-----~--~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQ-----A--GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhh-----c--cCC---
Confidence 468999999999996 259999999999 999999999976 599999998764321 111 1 112
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHcCCc
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 243 (524)
+.++..... +..|+.++|+.++..++ .+.++++.||+ +...+ +.++++.+.+.+++
T Consensus 62 ~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 333432211 23699999999987764 47899999999 55544 57777765443443
No 81
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.35 E-value=1.1e-10 Score=114.47 Aligned_cols=215 Identities=16% Similarity=0.231 Sum_probs=141.5
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
|||||+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.|.. +.+.+.. +.| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a-~~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVA-KSY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHH-HHc-------CC-Ee
Confidence 7999999999993 5999999999 99999999999986 7888776643 4454433 222 21 12
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.++...... .+..|+.++++.++..++.. ...+.++++.+|.=+. .++.++++.+.+.++|..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 222111110 11248899999998877521 2247899999998443 56899999988877888888877543
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~ 333 (524)
. + .+. ...+++|+...+........ .++. ...+..+.++|+++++.|.+ . . .+
T Consensus 137 ~-~-~~~-~~~~~~g~~~~~~~~~~~~~--------------rQd~-~~~y~~nga~y~~~~~~~~~---~----~-~~- 189 (222)
T TIGR03584 137 P-I-QRA-FKLKENGGVEMFFPEHFNTR--------------SQDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI- 189 (222)
T ss_pred C-h-HHh-eEECCCCcEEecCCCcccCC--------------CCCC-chheeeCCeEEEEEHHHHHh---c----C-Cc-
Confidence 1 1 122 24456677666542211000 0010 02366799999999998752 1 1 11
Q ss_pred hhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHh
Q 009817 334 SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l 371 (524)
+ ..++..|..+. .-+||+|++||.-|...+
T Consensus 190 ---~-----~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 ---F-----SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ---c-----CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 1 34678888775 489999999999997643
No 82
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.35 E-value=5.6e-12 Score=120.55 Aligned_cols=139 Identities=24% Similarity=0.288 Sum_probs=96.3
Q ss_pred CCCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhhh
Q 009817 383 PKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLL 458 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~ 458 (524)
+...+...+.++++++|. ++.|.++.|+++|.|+ ++.+++++|+.+++|++++.|. ++.+..+..++...++ .+.+
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 333344444555555553 3666777888888887 5777788888888888888886 4555555555554444 4566
Q ss_pred cCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 459 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 459 ~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+++ +.|++.+.|.+|+||+++.||+++++.+.+. .....++.+|+.+. +.|++++.|++|++|
T Consensus 106 g~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 106 GEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred cCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 777 6778888888999999999999999887541 23455567776663 478888888888764
No 83
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.35 E-value=9.6e-11 Score=116.80 Aligned_cols=220 Identities=12% Similarity=0.080 Sum_probs=131.3
Q ss_pred CCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcc
Q 009817 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTN 169 (524)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~ 169 (524)
.+..+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+. ++++|+|++++......+.+.+.
T Consensus 21 ~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~------- 89 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN------- 89 (252)
T ss_pred ccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-------
Confidence 3566889999999999995 3479999999999 9999999999984 89999999987644333222111
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce---eccc-CHHHHHHHHHHcCCcEE
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LYRM-DYMDFIQSHVDRDADIT 245 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~---l~~~-dl~~ll~~h~~~~ad~t 245 (524)
++ ..+.+.. .. .+..++|+.++..++ .+..+|+.+|. +... .+..+++...+.++ .
T Consensus 90 ~~-~~i~~v~--gg---------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~ 149 (252)
T PLN02728 90 ID-VPLKFAL--PG---------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHGA--A 149 (252)
T ss_pred cC-CceEEcC--CC---------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--E
Confidence 21 1133221 11 144678988887664 13455666773 3443 46888887766554 4
Q ss_pred EEEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 246 ISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 246 l~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
+.+.++.+ .+..+++++.|.. .+....+ +.-=-=-.|+.+.|.+..+..
T Consensus 150 i~~~~~~d------tik~v~~~~~v~~---t~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~~ 198 (252)
T PLN02728 150 VLGVPVKA------TIKEANSDSFVVK---TLDRKRL----------------------WEMQTPQVIKPELLRRGFELV 198 (252)
T ss_pred EEeecchh------hEEEecCCCceee---ccChHHe----------------------EEEeCCccchHHHHHHHHHHH
Confidence 55555443 1233455554433 2322211 111112456777666655543
Q ss_pred CCCCCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 326 YPTSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 326 ~~~~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
...... ..|-...+.. ..+|....-+..-+-|.||+|+..|+..+..
T Consensus 199 ~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 199 EREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 222212 2332222222 3456665544557789999999999886653
No 84
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.32 E-value=9e-11 Score=110.98 Aligned_cols=121 Identities=18% Similarity=0.319 Sum_probs=93.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
+..+.+||||||+|+||. .+|.|.|+.|+ ||+++.++.+.+++.+++++++++...... ..+..
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~----~a~~~------ 66 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAV----EALLA------ 66 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHH----Hhhhc------
Confidence 456789999999999998 78999999999 999999999999999999999999722221 12211
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~ 240 (524)
...+.++... +|.+|.+.+++.+...+.. ..+.++++.||+ +...++..+++.+..+
T Consensus 67 ~~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 QLGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred cCCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 1125555443 3568999999999887752 125899999998 4456788888877665
No 85
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=2.1e-11 Score=113.59 Aligned_cols=91 Identities=15% Similarity=0.322 Sum_probs=71.9
Q ss_pred CCCCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcC
Q 009817 385 TPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~ 460 (524)
..+.....+++++.|. ++.|. +++||++|.|+ ++.|. +++||++|.|+++++|.+++++.+
T Consensus 12 ~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~--------------- 76 (163)
T cd05636 12 VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG--------------- 76 (163)
T ss_pred CEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC---------------
Confidence 3344444455555553 34443 58899999997 67776 699999999999999999998887
Q ss_pred CccceEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 009817 461 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 461 g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.|++++.+.+|+|+++++|++++++.+..
T Consensus 77 ----~~I~~~~~i~~siIg~~~~I~~~~~i~~~~ 106 (163)
T cd05636 77 ----TKVPHLNYVGDSVLGENVNLGAGTITANLR 106 (163)
T ss_pred ----CEeccCCEEecCEECCCCEECCCcEEcccC
Confidence 899999999999999999999999997753
No 86
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.28 E-value=2.5e-11 Score=99.64 Aligned_cols=78 Identities=15% Similarity=0.418 Sum_probs=51.1
Q ss_pred ECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCC
Q 009817 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (524)
Q Consensus 409 Ig~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (524)
||++|.|+ ++.|.+++||++|.|+++++|++++++.+ +.||+++.|.+|+|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 45555555 34555666777777777777766666666 66777777777777777777777
Q ss_pred cEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCc
Q 009817 488 VVIVNKDEADRPELGFYIRSGITIIMEKATIEDGM 522 (524)
Q Consensus 488 ~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gt 522 (524)
+.+.++ +|++++.|++++
T Consensus 63 ~~v~~~-----------------ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDC-----------------LVGSGYRVEAGT 80 (81)
T ss_pred CEEccC-----------------EECCCcEeCCCC
Confidence 766654 666666666664
No 87
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.28 E-value=6.7e-11 Score=122.12 Aligned_cols=47 Identities=11% Similarity=-0.068 Sum_probs=26.8
Q ss_pred eEeecCCHHHHHHHHHHhhccCCC-ccccCCCCCCCCCCccCCCeEEc
Q 009817 354 YWEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKID 400 (524)
Q Consensus 354 ~w~dIgt~~d~~~An~~l~~~~~~-~~~~~~~~~i~~~~~i~p~~~i~ 400 (524)
.+.-+++|...+..-..++...++ ...++|.+.+.+++.++++++|.
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~ 113 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIG 113 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEEC
Confidence 356678887666554555543322 34456666666666666555553
No 88
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.27 E-value=9.1e-11 Score=118.60 Aligned_cols=59 Identities=27% Similarity=0.332 Sum_probs=31.1
Q ss_pred eEeCCCcEEee-eEECCCCEECCCcEEeCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 465 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.||++++|+| +-|++||+||++|.|.++. +..++.+.+. -.|.+.|.....|+|++.|
T Consensus 225 TvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~-igg~vgI~gh~~IgD~~~I 287 (338)
T COG1044 225 TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVI-IGGQVGIAGHLEIGDGVTI 287 (338)
T ss_pred ceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEE-ECcceeecCceEEcCCCEE
Confidence 45555555544 5666666666666666664 2223322222 2344555555666666543
No 89
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.27 E-value=2.7e-10 Score=109.47 Aligned_cols=184 Identities=12% Similarity=0.212 Sum_probs=112.7
Q ss_pred CCCCceeEEEEeCCCCCcccCCccCCCccceeecC-cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCc
Q 009817 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT 168 (524)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgG-k~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~ 168 (524)
+++..+.+||||||.|+||+ .+|+|+|++| + |||+++++++... +++|+|++++ +. | .
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~--------~-~--- 62 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KK--------F-E--- 62 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hh--------c-c---
Confidence 45567889999999999995 5899999999 9 9999999999876 8999999875 11 1 0
Q ss_pred ccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccC-HHHHHHHHHHcCCcEEE
Q 009817 169 NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVDRDADITI 246 (524)
Q Consensus 169 ~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~~~~ad~tl 246 (524)
+. ++++...+.. ..|...++..++... ..+.++++.||+-+ ..+ +.++.. +.+.++
T Consensus 63 -~~---~~~v~d~~~~-------~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~-- 120 (196)
T PRK00560 63 -FN---APFLLEKESD-------LFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKLCG---KENFSV-- 120 (196)
T ss_pred -cC---CcEEecCCCC-------CCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHHHh---cCCCCE--
Confidence 11 2333321111 236666666555433 24899999999944 544 345421 111111
Q ss_pred EEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 247 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 247 ~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
+....+++ . ..-+.+|+++.+..+.+...
T Consensus 121 ---------------~~~~~~~~--------~----------------------------~Pl~al~~~~~~~~l~~~l~ 149 (196)
T PRK00560 121 ---------------TYAKSPTK--------E----------------------------HYLISLWHQSLLNALIYALK 149 (196)
T ss_pred ---------------EEEccCCc--------e----------------------------eeeEEEEcHHHHHHHHHHHH
Confidence 11111111 0 11136788888876543221
Q ss_pred CCCCchhhhhHHhhhhcCceEEEEecC--eEeecCCHHHHHHHHHHhh
Q 009817 327 PTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 327 ~~~~d~~~dii~~li~~~~V~~y~~~~--~w~dIgt~~d~~~An~~l~ 372 (524)
.. + .-+..++++..+..+.+++ .|.||+|++||..+...+.
T Consensus 150 ~~--~---~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~~ 192 (196)
T PRK00560 150 TQ--N---YRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQILK 192 (196)
T ss_pred hC--C---ccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHHH
Confidence 11 1 1133444555566665553 5789999999988876553
No 90
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=5.6e-10 Score=106.52 Aligned_cols=235 Identities=15% Similarity=0.225 Sum_probs=161.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+...||+|-=..||| .-|||-.|+|+ |||.|+.++..++|.++++|.|.. +++.+++. .||.
T Consensus 3 ~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~--------~~G~- 64 (247)
T COG1212 3 KFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ--------AFGG- 64 (247)
T ss_pred ceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH--------HhCC-
Confidence 456899999999999 46999999999 999999999999999999999964 66777774 3431
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+ ++..... ..|| +-+..+...+. ....+.++=+-||. +.. ..+.++++...+.++++.-++.+.
T Consensus 65 ~a-vmT~~~h--------~SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i 131 (247)
T COG1212 65 EA-VMTSKDH--------QSGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKI 131 (247)
T ss_pred EE-EecCCCC--------CCcc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeec
Confidence 12 2222211 2466 44444444442 12345566668997 333 457888888887788877677666
Q ss_pred CCCC---CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 252 GESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 252 ~~~~---a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.++. ..+-..+..|.+|+-+.|+..|-....+. . ...+.+--.|+|.|++++|.++..+....
T Consensus 132 ~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~ 197 (247)
T COG1212 132 TDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSP 197 (247)
T ss_pred CCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCch
Confidence 5432 13455677899999999998775443111 0 00357889999999999999888765422
Q ss_pred CCchh-hhhHHhhhhcCceEEEEecCeE-eecCCHHHHHHHHHHhhc
Q 009817 329 SNDFG-SEIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~-~dii~~li~~~~V~~y~~~~~w-~dIgt~~d~~~An~~l~~ 373 (524)
-+... -+-|..+-..++|.+...+..- ..++|++||..+...+.+
T Consensus 198 LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 198 LEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred hHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 21111 1334444456899999888665 899999999999887754
No 91
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.26 E-value=3.5e-10 Score=108.92 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=80.7
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
..+.+||||||.|+||. .+|+|+|++|+ |||+|+++.+... +++|+|++++. +.. ..+ .. .
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~-~~~----~~----~-- 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERY-QSL----LP----P-- 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHH-Hhh----cc----C--
Confidence 35789999999999996 47999999999 9999999999754 78999988642 211 111 11 1
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccc-CHHHHHHHHH
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRM-DYMDFIQSHV 238 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~-dl~~ll~~h~ 238 (524)
.+.++.... |.+|..++++.++..++ .+.++|+.||+- ... .+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 144443322 23699999999988764 378999999993 344 3677777654
No 92
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.24 E-value=6.4e-11 Score=113.26 Aligned_cols=109 Identities=15% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEe-----ceEEeCCccccchhhHHh
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIAS 456 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~-----~s~i~~~~~~~~~~~~~~ 456 (524)
+..++.+.|.+.|. .++.||++|.|. +|.|. .++||.+|.|+++|.|+ +++++.+
T Consensus 11 i~~~~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~----------- 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN----------- 75 (192)
T ss_pred CCCCcEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-----------
Confidence 33444444444442 256777777777 55554 46899999999999994 4555555
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGM 522 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gt 522 (524)
+.||+++.|++|+|++++.||.+++|.+.. ...++..|..| .+|.++..|++++
T Consensus 76 --------~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~---~IG~~s~Vgag-s~V~~~~~ip~~~ 129 (192)
T TIGR02287 76 --------GHVGHGAILHGCIVGRNALVGMNAVVMDGA---VIGENSIVAAS-AFVKAGAEMPAQY 129 (192)
T ss_pred --------CEECCCCEEcCCEECCCCEECCCcccCCCe---EECCCCEEcCC-CEECCCCEECCCe
Confidence 899999999999999999999999997752 23333444433 2344444444443
No 93
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.21 E-value=1.4e-10 Score=107.27 Aligned_cols=95 Identities=15% Similarity=0.327 Sum_probs=66.1
Q ss_pred ceEECCCCEEC-ceEEec----eEEcCCcEECCCCEE-----eceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee
Q 009817 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I-----~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~ 475 (524)
++.||++|+|+ ++.|.. ++||++|.|+++|.| .+++++.. +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 56777777776 465653 789999999999999 44666665 88999999999
Q ss_pred eEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 476 CIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
|+||+++.||.++.|.+.. ...++..|..+ ++|.++..|+++++
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~---~Ig~~~~Ig~~-s~v~~~~~i~~~~~ 122 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGA---VIGEESIVGAM-AFVKAGTVIPPRSL 122 (155)
T ss_pred CEECCCCEECCCCEEeCCC---EECCCCEECCC-CEeCCCCEeCCCCE
Confidence 9999999999998887752 33334444443 24444444554443
No 94
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.21 E-value=2.4e-10 Score=119.12 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=21.1
Q ss_pred cCCHHH-HHHHHHHhhccC--CCccccCCCCCCCCCCccCCCeEEc
Q 009817 358 IGTIKS-FYEANMALTKES--PAFHFYDPKTPFYTSPRFLPPTKID 400 (524)
Q Consensus 358 Igt~~d-~~~An~~l~~~~--~~~~~~~~~~~i~~~~~i~p~~~i~ 400 (524)
+++|.. |..+...+..+. .....++|.+.+.+++.++++++|.
T Consensus 77 ~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~ 122 (343)
T PRK00892 77 VKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIG 122 (343)
T ss_pred eCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEEC
Confidence 455543 444444443222 1123456666666665555555553
No 95
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=9.3e-11 Score=96.22 Aligned_cols=77 Identities=13% Similarity=0.404 Sum_probs=69.0
Q ss_pred cCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 393 i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
++++++|+ ++.|.+++|+++|.|+ ++.|++|+|++++.|+++++|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 45666674 4677789999999998 68999999999999999999999999988 999999
Q ss_pred cEEeeeEECCCCEECCCc
Q 009817 471 TKIRNCIIDKNVKIGKDV 488 (524)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~ 488 (524)
+.+++|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999875
No 96
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=107.58 Aligned_cols=92 Identities=24% Similarity=0.429 Sum_probs=58.2
Q ss_pred CCCCCccCCCeEE-cCeeee-ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccc
Q 009817 387 FYTSPRFLPPTKI-DNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP 464 (524)
Q Consensus 387 i~~~~~i~p~~~i-~~~~i~-~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~ 464 (524)
|.+++.+.|.+.| ++++|. ++.|+++++|+ +..+.-.||.+|.|.+||.|+ .+. .-...+|+.
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlR-gD~~~I~IG~~tNIQDg~ViH------~~~-----~~p~~IG~~--- 78 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLR-GDVEPIRIGARTNIQDGVVIH------ADP-----GYPVTIGDD--- 78 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEE-ccCCceEECCCceecCCeEEe------cCC-----CCCeEECCC---
Confidence 4444444454443 334442 35555555555 222445566666555555554 311 123455666
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.|+.|.|++||.||.|++|.|+
T Consensus 79 vtIGH~aivHGc~Ig~~~lIGmgA~vldg 107 (176)
T COG0663 79 VTIGHGAVVHGCTIGDNVLIGMGATVLDG 107 (176)
T ss_pred cEEcCccEEEEeEECCCcEEecCceEeCC
Confidence 99999999999999999999999999997
No 97
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.20 E-value=1.7e-10 Score=110.69 Aligned_cols=87 Identities=17% Similarity=0.359 Sum_probs=61.3
Q ss_pred CCCccCCCeEEcCeeeeceEECCCCEEC-ceEEec----eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCcc
Q 009817 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (524)
Q Consensus 389 ~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~ 463 (524)
+++.+.|.+.|. .++.||++|.|+ ++.|.. ++||.+|.|+++|.|+..... .++++++
T Consensus 15 ~~a~I~~~a~I~----g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~-----------~siIg~~-- 77 (196)
T PRK13627 15 PTAFVHPSAVLI----GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDT-----------DTIVGEN-- 77 (196)
T ss_pred CCeEECCCCEEE----CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCC-----------CCEECCC--
Confidence 344444444443 256666666666 455543 588999999999988653211 2445555
Q ss_pred ceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.+++|+|+++|.||.+++|.++
T Consensus 78 -~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g 106 (196)
T PRK13627 78 -GHIGHGAILHGCVIGRDALVGMNSVIMDG 106 (196)
T ss_pred -CEECCCcEEeeEEECCCCEECcCCccCCC
Confidence 89999999999999999999999999876
No 98
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.19 E-value=8.3e-10 Score=116.06 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|+.+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+..+ +.+
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~-----~~~----- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDL-----FPG----- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhh-----ccC-----
Confidence 567899999999999995 379999999999 999999999975 5899999776544332211 111
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHcCCcE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDADI 244 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad~ 244 (524)
+.++...... ..|...+++.++..++ .+.++++.||+ +...+ +..+++.+.+.++++
T Consensus 67 ---~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 ---LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred ---CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 2223222211 1488899998887653 36799999998 44544 677777665555543
No 99
>PLN02296 carbonate dehydratase
Probab=99.18 E-value=1.7e-10 Score=115.68 Aligned_cols=126 Identities=12% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEeceEEeCCccccchhhHHh
Q 009817 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS 456 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~ 456 (524)
+....+...+.+.|.+++.+ ++.||++|.|. +|.|. +++||++|.|+++|.|..+..- +. .....+
T Consensus 50 ~~~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~----~~-g~~~~s 120 (269)
T PLN02296 50 DKAPVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTN----LS-GKVLPT 120 (269)
T ss_pred CCCCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCc----cc-CCCCCc
Confidence 33344555666666666543 45555555555 34443 3589999999999988631100 00 000123
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+++++ +.||+++.|++|+|+++|.||.+++|.++. ++.++..|..| .+|.++..|+++++
T Consensus 121 iIG~~---v~IG~~avI~g~~Igd~v~IG~ga~I~~gv---~Ig~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 121 IIGDN---VTIGHSAVLHGCTVEDEAFVGMGATLLDGV---VVEKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred EeCCC---CEECCCceecCCEECCCcEECCCcEECCCe---EECCCCEECCC-CEEecCCEeCCCeE
Confidence 34444 899999999999999999999999998762 33333444433 34444444555443
No 100
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.18 E-value=1.7e-10 Score=93.85 Aligned_cols=77 Identities=27% Similarity=0.571 Sum_probs=57.3
Q ss_pred ECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCC
Q 009817 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (524)
Q Consensus 409 Ig~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (524)
|+++|.|+ ++.+.+++||++|+|++++.|++++++++ +.|++++.|.+|+|++++.|+.+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 56666665 46666678888888888888888887777 78888888888888888888888
Q ss_pred cEEeCCCCCCCCCCceEEecCcEEEcCCCEeCC
Q 009817 488 VVIVNKDEADRPELGFYIRSGITIIMEKATIED 520 (524)
Q Consensus 488 ~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~ 520 (524)
+.+.+. .++++++.|+|
T Consensus 63 ~~i~~~----------------~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNL----------------CIIGDDVVVED 79 (79)
T ss_pred CEEcCC----------------eEECCCeEECc
Confidence 877764 26677776654
No 101
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.17 E-value=1.9e-10 Score=110.05 Aligned_cols=98 Identities=15% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCccc
Q 009817 390 SPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVP 464 (524)
Q Consensus 390 ~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~~ 464 (524)
.+.+++++.|+ .+.|. ++.||++|+|+ ++.|.++.||++|+|++++.|+++++..+..++....+ .+.++++
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~--- 91 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG--- 91 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC---
Confidence 34444555553 24443 68999999998 68899999999999999999999888887444443322 2344444
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEE
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (524)
+.|++++.+++++|+++++|+..+.+
T Consensus 92 ~~Ig~~~~i~~s~ig~~~~i~~~~~i 117 (193)
T cd03353 92 VHIGNFVEIKKSTIGEGSKANHLSYL 117 (193)
T ss_pred CEECCcEEEecceEcCCCEeccccee
Confidence 45555555555555555544444333
No 102
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.16 E-value=3.6e-09 Score=103.29 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=122.4
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+.+||||||.|+||. ...||++++++|+ |+|.|.++.+.+. .+++|+|++........+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 468999999999997 3589999999999 9999999999985 79999999977653332222211 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.++..-. .-.++++.++..+.+ ..+.++|=.|= .+...-+.++++...+ +.+..+...++
T Consensus 67 ~v~iv~GG~-----------tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~ 130 (221)
T PF01128_consen 67 KVKIVEGGA-----------TRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV 130 (221)
T ss_dssp TEEEEE--S-----------SHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-
T ss_pred CEEEecCCh-----------hHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec
Confidence 255554221 345789999888863 22344443331 1222236777777655 23456666666
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
.+ .+..++++|.|..... ... .+.-=.=-.|+.+.|.+..+.......+
T Consensus 131 ~D------Tik~v~~~~~v~~tld---R~~----------------------l~~~QTPQ~F~~~~l~~a~~~a~~~~~~ 179 (221)
T PF01128_consen 131 TD------TIKRVDDDGFVTETLD---RSK----------------------LWAVQTPQAFRFELLLEAYEKADEEGFE 179 (221)
T ss_dssp SS------EEEEESTTSBEEEEET---GGG----------------------EEEEEEEEEEEHHHHHHHHHTHHHHTHH
T ss_pred cc------cEEEEecCCcccccCC---HHH----------------------eeeecCCCeecHHHHHHHHHHHHhcCCC
Confidence 54 3456666777665432 111 1111123568888887766544221112
Q ss_pred hhhhhHHhhhh--cCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 332 FGSEIIPAAIM--EHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 332 ~~~dii~~li~--~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
+..|. .++. ..++....-+..-+-|.||+|+..|+..+.
T Consensus 180 ~tDda--sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~ 220 (221)
T PF01128_consen 180 FTDDA--SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLK 220 (221)
T ss_dssp HSSHH--HHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHH
T ss_pred ccCHH--HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhc
Confidence 22221 1222 345555544445677999999999987653
No 103
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.16 E-value=2.2e-10 Score=115.90 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=34.6
Q ss_pred eeEECCCCEECCCcEEeCCC-CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 475 NCIIDKNVKIGKDVVIVNKD-EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~-e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.+|++++.||.|+.|..+. ....++++..|. +.+.|++|+.|+.+|.|
T Consensus 202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kId-N~vqIaHnv~IG~~~~I 251 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKID-NLVQIGHNVRIGEHCII 251 (338)
T ss_pred eEEECCceEEcccceeccccccCceecCCcEEc-ceeEEccccEECCCcEE
Confidence 67788888888888888776 445555556554 34777888887777764
No 104
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.15 E-value=2.8e-10 Score=114.25 Aligned_cols=143 Identities=14% Similarity=0.184 Sum_probs=76.7
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEec-------------eEE
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD-------------TVM 442 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~-------------s~i 442 (524)
.++|.+.+.+++.++++++|+. |.|. ++.||++|.|+ ++.|. +++||++|+|+++|.|.. ..|
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 3455555555565655555543 4442 46777777776 45554 467777777777777753 334
Q ss_pred eCCccccchhhHH--hhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EE
Q 009817 443 LGADYYQTESEIA--SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TI 511 (524)
Q Consensus 443 ~~~~~~~~~~~~~--~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~v 511 (524)
..+..++..+.+. +....+ .+.||+++.|. ++.|+.+|.||.++++.+.. +...+.++.+|..+. +.
T Consensus 84 G~~~~I~e~~~I~~~~~~~~~--~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~ 161 (262)
T PRK05289 84 GDNNTIREFVTINRGTVQGGG--VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVR 161 (262)
T ss_pred CCCCEECCCeEEecccccCCC--eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCE
Confidence 4443333333321 101111 14566665552 45555555555555555543 334556666666553 35
Q ss_pred EcCCCEeCCCccc
Q 009817 512 IMEKATIEDGMVI 524 (524)
Q Consensus 512 v~~~~~i~~gtvI 524 (524)
||+++.|++|++|
T Consensus 162 Ig~~~~Ig~gs~V 174 (262)
T PRK05289 162 IGAHAMVGGMSGV 174 (262)
T ss_pred ECCCCEEeeecce
Confidence 6777777776654
No 105
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.14 E-value=6.3e-10 Score=105.96 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=86.0
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.++++++|+|++++..+.+ ..+.+.... .. .+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~---~~---~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA---DE---RI 68 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc---CC---Ce
Confidence 58999999999997 37999999999 99999999998899999999998765432 112111111 11 14
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDA 242 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a 242 (524)
.++... +|..|.+.+|+.++..+.+ ...+.++++.||+ +... .+..+++.......
T Consensus 69 ~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 69 MLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred EEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 444322 2335889999999877631 2357899999999 3343 46777776544333
No 106
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.13 E-value=2.5e-10 Score=114.03 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=30.7
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.||+++.|. ++.|+.++.||+++.|.+.. ....+.++..|..+. +.||++++|+++++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 5566666663 45555555555555555443 223444444444432 356666666666553
No 107
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.12 E-value=2.1e-09 Score=113.17 Aligned_cols=114 Identities=9% Similarity=0.145 Sum_probs=78.1
Q ss_pred CCCCCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCC
Q 009817 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (524)
Q Consensus 88 ~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~ 167 (524)
.++++..+.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+.. ..++|+|+++...... +.
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~------- 230 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YR------- 230 (369)
T ss_pred cccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hh-------
Confidence 3444566789999999999996 48999999999 999999999976 4788888776542211 11
Q ss_pred cccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHH
Q 009817 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQS 236 (524)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~ 236 (524)
.++ +.++..... .+|...++..++.... .+.++++.||+ +...+ +..+++.
T Consensus 231 -~~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 231 -SFG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred -hcC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 112 344432221 1477778877765432 46899999999 33444 5666554
No 108
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.11 E-value=4.5e-10 Score=91.10 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=62.5
Q ss_pred ECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCC
Q 009817 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (524)
Q Consensus 409 Ig~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (524)
||++|.|+ ++.|.+++|+.+|.|+++++|.+++++++ +.|++++.|.+|+|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 45666666 45566789999999999999999888887 89999999999999999999999
Q ss_pred cEEeCCCCCCCCCCceEEecCcEEEcCCCEeCC
Q 009817 488 VVIVNKDEADRPELGFYIRSGITIIMEKATIED 520 (524)
Q Consensus 488 ~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~ 520 (524)
+.|... .+|++++.|++
T Consensus 63 ~~i~~~----------------~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPG----------------SLISFGVVIGD 79 (79)
T ss_pred CEECCC----------------CEEeCCcEeCc
Confidence 888765 36777777664
No 109
>PLN02472 uncharacterized protein
Probab=99.11 E-value=3.3e-10 Score=112.17 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCCCCCccCCCeEEcC-eeee-ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
..+...+.+.|++.+.+ +.|. ++.|++|++|++ .....+||.+|.|+++|.|+...-. .+...-.+.++++
T Consensus 60 p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirg-d~~~I~IG~~t~Ig~~~vI~~~~~~-----~~~i~~~tvIG~~- 132 (246)
T PLN02472 60 PKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRG-DLNKITVGFCSNVQERCVLHAAWNS-----PTGLPAETLIDRY- 132 (246)
T ss_pred CccCCCCEECCCCEEecCEEECCCCEEcCCCEEec-CCcceEECCCCEECCCCEEeecCcc-----ccCCCCCcEECCC-
Confidence 34555566666666543 3332 345555555441 1123689999999999998521100 0000001233344
Q ss_pred cceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.|++|+|+++|.||.+++|.++
T Consensus 133 --v~IG~~s~L~~~~Igd~v~IG~~svI~~g 161 (246)
T PLN02472 133 --VTIGAYSLLRSCTIEPECIIGQHSILMEG 161 (246)
T ss_pred --CEECCCcEECCeEEcCCCEECCCCEECCC
Confidence 89999999999999999999999999876
No 110
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.10 E-value=4.8e-09 Score=103.12 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=78.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCc--hhHHHHHHHhhhcCCcccCCC
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~--~~l~~hl~~~y~~~~~~~~~~ 173 (524)
|||||||.++||. +|+|+|++|+ |||+|+++.+.+++ +++|+|+++... +.+.+++. . ++
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~-------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-K-------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-H-------cC--
Confidence 7999999999993 4999999999 99999999999987 899999998765 44444432 1 12
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-cCHHHHHHHHHHcCCcEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADIT 245 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~t 245 (524)
++++..... + .+..+...++. ...+.++++.||+= .. ..+.++++.+...+.+++
T Consensus 65 -v~~v~~~~~----------~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSEE----------D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCch----------h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 344432211 1 12222222221 23478999999993 34 457899998877666554
No 111
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.09 E-value=1.5e-09 Score=101.47 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=68.5
Q ss_pred ceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECC
Q 009817 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~ 480 (524)
++.||++|+|. ++.+. .++||++|.|+++|.|.+++.+... ......++++ +.|+.++.|.+++||+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~---~~i~~~~~i~~~~IGd 88 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSN---NVFEVGCKCEALKIGN 88 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCC---CEECCCcEEEeeEECC
Confidence 56677777776 45553 3589999999999999877654220 0001233334 5566677777888888
Q ss_pred CCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 481 NVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 481 ~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+|.||.+++|... ..+.++..|+.| ++|.+++.|++++++
T Consensus 89 ~~~Ig~~a~I~~g---v~Ig~~~~Igag-svV~~~~~i~~~~vi 128 (164)
T cd04646 89 NNVFESKSFVGKN---VIITDGCIIGAG-CKLPSSEILPENTVI 128 (164)
T ss_pred CCEEeCCCEECCC---CEECCCCEEeCC-eEECCCcEECCCeEE
Confidence 8888888888765 244455555555 556666666666553
No 112
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.09 E-value=6.4e-10 Score=95.91 Aligned_cols=75 Identities=28% Similarity=0.477 Sum_probs=62.4
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
+.|+++|.| ++|+||.+|+|+ ++.|++++++.+ +.|++++.|.+|+|++++.||.
T Consensus 2 ~~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 455555555 468999999999 999999999998 9999999999999999999999
Q ss_pred CcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 487 DVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 487 ~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
++.+.+. +|++++.|+++++
T Consensus 57 ~~~i~~s-----------------iig~~~~Ig~~~~ 76 (104)
T cd04651 57 NAVIRRA-----------------IIDKNVVIPDGVV 76 (104)
T ss_pred CCEEEeE-----------------EECCCCEECCCCE
Confidence 9999764 5566666666554
No 113
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.07 E-value=1.1e-09 Score=109.47 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=69.6
Q ss_pred cCCCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEec------------eE-Ee
Q 009817 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD------------TV-ML 443 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~------------s~-i~ 443 (524)
++|.+.+.+++.++.+++|+. |.| .++.||++|.|+ ++.|. ++.||.+++|++++.|.. .+ |.
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 344455555555555555542 333 246666666666 44443 455666666665555542 11 22
Q ss_pred CCccccchhhH--HhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEE
Q 009817 444 GADYYQTESEI--ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TII 512 (524)
Q Consensus 444 ~~~~~~~~~~~--~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv 512 (524)
.++.+...+.+ .+..+.. +.||+++.|. ++.|+++|.||++++|.+.. ...++.+..+|..+. +.|
T Consensus 82 ~~~~I~e~vtI~~gt~~g~~---t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~I 158 (255)
T PRK12461 82 DRNVIREGVTIHRGTKGGGV---TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI 158 (255)
T ss_pred CceEECCccEEecCcccCCc---EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEE
Confidence 22222222211 1111111 6666666663 56777777777777777664 223444444544442 245
Q ss_pred cCCCEeCCCcc
Q 009817 513 MEKATIEDGMV 523 (524)
Q Consensus 513 ~~~~~i~~gtv 523 (524)
|+++.|++|++
T Consensus 159 G~~a~Vg~gs~ 169 (255)
T PRK12461 159 GALAMMAGGSR 169 (255)
T ss_pred CCCcEECCCce
Confidence 55555555554
No 114
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.07 E-value=1.1e-09 Score=106.00 Aligned_cols=59 Identities=12% Similarity=0.301 Sum_probs=41.7
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEec
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD 439 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~ 439 (524)
.+++.+.+. .+.+++++.|+. |.|.+++||++|.|+ ++.+.+++||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 344555553 356667777753 777778888888888 57777888888888888887754
No 115
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.06 E-value=3.7e-10 Score=122.99 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=47.6
Q ss_pred eeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEEC
Q 009817 403 RIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (524)
Q Consensus 403 ~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~ 479 (524)
.|.+++||++|.|+ ++.+. +++||+++.|+.+++|++++++.+...+....+ . .+.||+||.|. +++|+
T Consensus 319 ~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~-----~---~~~ig~~~~ig~~~~i~ 390 (481)
T PRK14358 319 VLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYL-----G---DVTIGAETNVGAGTIVA 390 (481)
T ss_pred eecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEE-----C---CeEEcCCceEcCCEEEe
Confidence 33456666666666 45553 577777777777777777777666544443222 1 14445544443 34343
Q ss_pred -------CCCEECCCcEEeCCC
Q 009817 480 -------KNVKIGKDVVIVNKD 494 (524)
Q Consensus 480 -------~~~~Ig~~~~i~~~~ 494 (524)
.++.||+++.|....
T Consensus 391 ~~~~~~~~~~~Ig~~~~ig~~~ 412 (481)
T PRK14358 391 NFDGVNKHQSKVGAGVFIGSNT 412 (481)
T ss_pred CCCCccCCCCEECCCeEEcCCC
Confidence 245666666666654
No 116
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.06 E-value=4.1e-10 Score=121.21 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=34.8
Q ss_pred eeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccch
Q 009817 402 CRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~ 451 (524)
+.+.+++|+++|.|+ ++.|. +++||++|+|+++++++++.+..+..++..
T Consensus 309 ~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~ 360 (451)
T TIGR01173 309 SVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHL 360 (451)
T ss_pred cEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecce
Confidence 455567777777777 45665 578888888888888887777766554443
No 117
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.06 E-value=6.7e-09 Score=107.08 Aligned_cols=212 Identities=19% Similarity=0.276 Sum_probs=129.4
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhcC-----------CCeEEEEec-cCchhHHH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG-----------INKIFVLTQ-FNSASLNR 157 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~sG-----------i~~I~Ivt~-~~~~~l~~ 157 (524)
.+|.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|+|+ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 4688999999999999 677899999998 68 99999999998742 124568888 67778877
Q ss_pred HHHH-hhhcCCcccCCCeEEEEccccCC-----C-------CCCCCcccCcHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 009817 158 HIAR-TYFGNGTNFGDGFVEVLAATQTP-----G-------ESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (524)
Q Consensus 158 hl~~-~y~~~~~~~~~~~V~vl~~~q~~-----~-------e~~~~~~~Gta~al~~a~~--~i~~~~~~~~e~~Lvl~g 222 (524)
++.+ .||+-. ...|.++....-| + ..-.-.+-|.++....... .++++...+.+++.+.+.
T Consensus 90 ~~~~~~~fGl~----~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~v 165 (323)
T cd04193 90 FFKENNYFGLD----PEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSV 165 (323)
T ss_pred HHHhCCcCCCC----CceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEec
Confidence 7754 233321 1122222110000 0 0001123588776654432 355555578899999999
Q ss_pred cee-cccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCcccccccccccccccCCccccc
Q 009817 223 DHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (524)
Q Consensus 223 D~l-~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~ 300 (524)
|.+ ...-=-.++-.+.++++++++-+.+...+. +.-|. +..|..-.+.++.|-|....... ..+.. +
T Consensus 166 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~~~g~-l-------- 234 (323)
T cd04193 166 DNILVKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-DADGE-L-------- 234 (323)
T ss_pred CcccccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-CcCCc-E--------
Confidence 995 433335667778888999888666654322 23444 44454455667776654332110 00100 0
Q ss_pred cCCcceeeeEEEEeHHHHHHHHHh
Q 009817 301 KCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 301 ~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
..+..++.+.+|+.++|.++++.
T Consensus 235 -~f~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 235 -QYNAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred -ecccchHhhheeCHHHHHHHHhh
Confidence 12344566788999988877653
No 118
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=1.1e-09 Score=89.22 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=66.5
Q ss_pred cCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 393 i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
+++.+.|+ ++.|.+++|+++|.|+ ++.+++|+|+++++|++++.|.+++++.+ +.|+.+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 45667774 5777789999999998 79999999999999999999999999988 899999
Q ss_pred cEEee-eEECCCCEECC
Q 009817 471 TKIRN-CIIDKNVKIGK 486 (524)
Q Consensus 471 ~~I~~-~iI~~~~~Ig~ 486 (524)
+.|.+ ++|+++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99988 99999988874
No 119
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.05 E-value=2e-08 Score=97.97 Aligned_cols=222 Identities=17% Similarity=0.170 Sum_probs=131.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHHhhhcCCccc
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~ 170 (524)
..+.+||||||.|+||.. ..||++++++|+ |||+|.++.+..+ .|++|+|+++..... +.++.. + .
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------~ 70 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------S 70 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------c
Confidence 457899999999999975 699999999999 9999999999987 689999999874322 222221 1 1
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eecccCHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tl~~ 248 (524)
....++++..-. .-.++++.++..+.. ...+.|||-.+= .+....+.++++...+ ....+.+
T Consensus 71 ~~~~v~~v~GG~-----------~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai~a 134 (230)
T COG1211 71 ADKRVEVVKGGA-----------TRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAILA 134 (230)
T ss_pred cCCeEEEecCCc-----------cHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEEEE
Confidence 123355554221 456889999888862 123445544441 2333446777744433 3345566
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.|+.+ .+...+++|.|.+.... ..+-. .-.| -.|+.+.|.+.++.....
T Consensus 135 lpv~D------Tik~~~~~~~i~~t~~R---~~l~~--------~QTP--------------Q~F~~~~L~~a~~~a~~~ 183 (230)
T COG1211 135 LPVTD------TLKRVDADGNIVETVDR---SGLWA--------AQTP--------------QAFRLELLKQALARAFAE 183 (230)
T ss_pred eeccC------cEEEecCCCCeeeccCh---hhhhh--------hhCC--------------ccccHHHHHHHHHHHHhc
Confidence 66654 23444456666643321 11100 0011 346677776666544333
Q ss_pred CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..++..|.--......++....=+-+-+-|.||+||.-|+..+..
T Consensus 184 ~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 184 GREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred CCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 333322211111113455554444457889999999999887653
No 120
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.05 E-value=1.3e-09 Score=109.02 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=26.2
Q ss_pred eEeCCCcEE-------eeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 465 IGVGRNTKI-------RNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I-------~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.||+++.| ++|+||+++.|+.++.|... ....++..|..+. +.|+++++|+++++|
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~---~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH---VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCC---cEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 455555555 33444444444444333322 3334444444442 355666666665543
No 121
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.04 E-value=1.5e-10 Score=116.35 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=126.4
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHh--------cCCCeEEEEeccCchhHHHHHHHhh
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~--------sGi~~I~Ivt~~~~~~l~~hl~~~y 163 (524)
+.+||||||.||||+ ...||+|+||+ |+ |+|++.++++.+ .+|..+++...+..+.+.+++.+.-
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 358999999999994 67999999999 99 999999999986 3577777777778888888885321
Q ss_pred hcCCcccCCCeEEEE-ccccCC---------CCCCC-Cc-ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceec-cc
Q 009817 164 FGNGTNFGDGFVEVL-AATQTP---------GESGK-NW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM 228 (524)
Q Consensus 164 ~~~~~~~~~~~V~vl-~~~q~~---------~e~~~-~~-~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~-~~ 228 (524)
+. . ..+.++ +...+. .+..+ .| +-|.+|.+.... ..++++...+.+++.+.+.|.+. ..
T Consensus 77 ~~----~--~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v 150 (266)
T cd04180 77 QK----N--SYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKV 150 (266)
T ss_pred CC----C--CceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccc
Confidence 11 1 112211 110000 00000 22 357777665442 34555555788999999999855 44
Q ss_pred -CHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCCCc--EEEEEecCCcccccc---ccc-ccccccCCcccccc
Q 009817 229 -DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKA---MQV-DTSLLGFSPQEARK 301 (524)
Q Consensus 229 -dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~g~--V~~~~EKp~~~~~~~---~~v-~t~~~~l~~~~~~~ 301 (524)
|. .++-.+...++++..-+.+..... +.-|.+...++|+ +.++.|-|....... ..+ +.+. .
T Consensus 151 ~DP-~~lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~---------~ 219 (266)
T cd04180 151 ADP-LFIGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDD---------A 219 (266)
T ss_pred cCH-HHHHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCc---------e
Confidence 43 356667777888777665544322 2345544322244 566666543221100 000 1111 1
Q ss_pred CCcceeeeEEEEeHHHHHHHHH
Q 009817 302 CPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 302 ~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
.....++....|+-+.+.++++
T Consensus 220 ~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 220 PFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred eeccceEEEEEEEHHHHHHHHH
Confidence 3467799999999999887765
No 122
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.04 E-value=1.4e-09 Score=101.18 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=79.6
Q ss_pred ccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeC
Q 009817 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (524)
Q Consensus 392 ~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig 468 (524)
.+++++.|+ ++.|. +++|+++|.|+ ++.|.+|+||+++.|+.++.+.++++..+ +.|+
T Consensus 37 ~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~-------------------~~I~ 97 (163)
T cd05636 37 IIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN-------------------VNLG 97 (163)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC-------------------CEEC
Confidence 333444442 35555 58999999999 68999999999999999999999998888 6777
Q ss_pred CCcEEe-------------------------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 469 RNTKIR-------------------------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 469 ~~~~I~-------------------------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+++.+. +++|++++.||.++.|..+ +.|++++.|++|++
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g----------------~~ig~~~~i~agsv 161 (163)
T cd05636 98 AGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG----------------VKIGPGSWVYPGCV 161 (163)
T ss_pred CCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC----------------cEECCCCEECCCcE
Confidence 777663 5889999999999888877 59999999999987
Q ss_pred c
Q 009817 524 I 524 (524)
Q Consensus 524 I 524 (524)
|
T Consensus 162 V 162 (163)
T cd05636 162 V 162 (163)
T ss_pred e
Confidence 5
No 123
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.03 E-value=8.8e-10 Score=119.07 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=65.6
Q ss_pred CccCCCeEEc-Ceee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCccce
Q 009817 391 PRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 465 (524)
Q Consensus 391 ~~i~p~~~i~-~~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~~~ 465 (524)
+.+.+++.|. .+.+ .++.||+||.|+ ++.|++|+||++|+|+++|.|.++++..+..++.++.+ .+.++++ +
T Consensus 270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~---~ 346 (456)
T PRK14356 270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEG---A 346 (456)
T ss_pred cEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCC---C
Confidence 3444444443 2444 258899999998 78899999999999999999999998888655555544 3455555 5
Q ss_pred EeCCCcEEeeeEECCCCEECCCcEE
Q 009817 466 GVGRNTKIRNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 466 ~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (524)
.||+++.|++++|+++++|+.++.+
T Consensus 347 ~ig~~~~i~~~~i~~~~~i~~~~~i 371 (456)
T PRK14356 347 RVGNFVEMKKAVLGKGAKANHLTYL 371 (456)
T ss_pred EecCCceeeeeEecCCcEecccccc
Confidence 5666666666666665555444443
No 124
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.02 E-value=3e-09 Score=98.32 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=50.9
Q ss_pred ceEECCCCEEC-ceEEec----eEEcCCcEECCCCEEec-----eEEeCCccccchhhHHhhhcCCccceEeCCCcEEee
Q 009817 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I~~-----s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~ 475 (524)
++.||++|.|+ ++.|.. .+||+++.|+++|.|.. ++++.. +.|++++.|.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY-------------------VTIGHNAVVHG 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC-------------------CEECCCcEEEC
Confidence 46666666666 455544 48888888888888875 344444 78888888888
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
++|++++.||.++.+.+.
T Consensus 79 ~~Ig~~~~Ig~~~~i~~~ 96 (154)
T cd04650 79 AKVGNYVIVGMGAILLNG 96 (154)
T ss_pred cEECCCCEEcCCCEEeCC
Confidence 888888888888888764
No 125
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=4.8e-10 Score=120.17 Aligned_cols=91 Identities=12% Similarity=0.297 Sum_probs=81.8
Q ss_pred CCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCC
Q 009817 384 KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (524)
Q Consensus 384 ~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g 461 (524)
..-+..++.|+.+|+|+ ++.|.||+||.||.|+ ++.|++|.||.+|+||.||+|++++++++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 34466677888888886 6899999999999999 89999999999999999999999999999
Q ss_pred ccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 462 KVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 462 ~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|++++.+ ..|||+-++.+|++-++...
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 899999999 57999999999999888766
No 126
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.01 E-value=2.2e-09 Score=87.77 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=49.3
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
+.|++++.|++ +++||++|+|+++++|++++++++ +.|++++.|.+|++++++.||+
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34445555542 478888888888888888888887 7888888888888888888888
Q ss_pred CcEEeCC
Q 009817 487 DVVIVNK 493 (524)
Q Consensus 487 ~~~i~~~ 493 (524)
++.+.+.
T Consensus 63 ~~~~~~~ 69 (80)
T cd05824 63 WTRLENV 69 (80)
T ss_pred CcEEecC
Confidence 8888764
No 127
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=1.2e-09 Score=113.09 Aligned_cols=109 Identities=23% Similarity=0.378 Sum_probs=82.8
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH-HhhhcCCccceEeCCCcEEe-eeEECCCCE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~ 483 (524)
|++|.+|++|++ ++.||++|.||++|+|+|+.|-++..+..+..+ .+.++++ +.||..+++| ++.++.+++
T Consensus 274 DvvI~p~v~l~G----~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---~~VGPfA~LRPg~~L~~~~h 346 (460)
T COG1207 274 DVVIEPNVILEG----NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---ATVGPFARLRPGAVLGADVH 346 (460)
T ss_pred ceEEecCcEEee----eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC---cccCCccccCCcCcccCCCe
Confidence 566666666653 477777777777777777777777666664433 5667777 8888888887 788999999
Q ss_pred ECCCcEEeCCC--CCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 484 IGKDVVIVNKD--EADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 484 Ig~~~~i~~~~--e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
||..|.+.+.. +.....+=.||++- .||+++.|++||+
T Consensus 347 IGNFVEvK~a~ig~gsKa~HLtYlGDA--~iG~~~NiGAGtI 386 (460)
T COG1207 347 IGNFVEVKKATIGKGSKAGHLTYLGDA--EIGENVNIGAGTI 386 (460)
T ss_pred EeeeEEEecccccCCccccceeeeccc--eecCCceeccceE
Confidence 99999888887 56777777888875 8888888888876
No 128
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.99 E-value=8e-10 Score=119.50 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=64.7
Q ss_pred eeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEE
Q 009817 402 CRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCII 478 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI 478 (524)
+.+.+++|+++|.|+ ++.|. +++||.++.||++++|+++.++.+..++..+.+ + . +.||++|.|+ ++++
T Consensus 313 ~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~----g-~---~~ig~~~~ig~~~~~ 384 (456)
T PRK09451 313 SVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL----G-D---AEIGDNVNIGAGTIT 384 (456)
T ss_pred EEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc----c-c---cEECCCCEEcCCeEE
Confidence 555567777777777 45554 677788888888888877777777666554433 1 1 4455555553 2333
Q ss_pred CC-------CCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeC
Q 009817 479 DK-------NVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIE 519 (524)
Q Consensus 479 ~~-------~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~ 519 (524)
.. +++||+++.|.... ....|..|..| ++|+.++.|-
T Consensus 385 ~~~~~~~~~~~~Igd~~~ig~~~---~i~~~~~ig~~-~~i~~gs~v~ 428 (456)
T PRK09451 385 CNYDGANKFKTIIGDDVFVGSDT---QLVAPVTVGKG-ATIGAGTTVT 428 (456)
T ss_pred ecccCcccCCCEECCCcEECCCC---EEeCCcEECCC-CEECCCCEEc
Confidence 21 35566666665542 34566777776 6777777663
No 129
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.99 E-value=2.1e-09 Score=111.07 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=31.0
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecC-----cEEEcCCCEeCCCcc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSG-----ITIIMEKATIEDGMV 523 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g-----~~vv~~~~~i~~gtv 523 (524)
+.||++++|. .+.|++|++||+++.|.+.. ...+..+...|..+ .+.||+++.|+++++
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~ 285 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSG 285 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCE
Confidence 4455555553 35666666667776666653 22334444444322 135566666665554
No 130
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.97 E-value=2.1e-08 Score=95.93 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=79.8
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
+.+|.+||||||+|+|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. |. .++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~--------~~----~~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR--------YA----EFG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh--------hh----ccC
Confidence 56789999999999999 57999999999 999999999988754 555555443221 21 122
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHcC
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRD 241 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ 241 (524)
++++..... ++ |...+++.++..+. .+.++++.||+ +...+ +..+.+...+.+
T Consensus 62 ---~~vv~D~~~-------~~-GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------GF-GPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------CC-CCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 455544332 22 88999999987764 58999999999 34444 455555554433
No 131
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.97 E-value=4.5e-09 Score=105.08 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.6
Q ss_pred eEEcCCcEECCCCEEe
Q 009817 423 SIVGERSRLDYGVELK 438 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~ 438 (524)
++||++|.|+++|.|.
T Consensus 77 v~IG~~~~I~~~~~I~ 92 (254)
T TIGR01852 77 LIIGDNNTIREFVTIN 92 (254)
T ss_pred EEECCCCEECCCCEEC
Confidence 4444444444444443
No 132
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.97 E-value=6e-09 Score=97.54 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=15.7
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEe
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (524)
+.||.++.|.++.||+++.||.++.|.
T Consensus 89 ~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 89 CFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred CEECCCCEEECCEECCCCEEcCCCEEe
Confidence 555555555555555555555555554
No 133
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=2.1e-09 Score=115.83 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=47.0
Q ss_pred ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
++.||++|.|+ ++.|.+|+||++|+|. ++.+.+++++++..++....+ .+.++++ +.||+++.+++++||+++
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~~ig~~~ 348 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKS---VKIGNFVEIKKSTIGENT 348 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCC---cEecCceeeeccEEcCCc
Confidence 47777888887 5777778888888875 467777777777555554433 2455555 555555555555555544
No 134
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.95 E-value=8.2e-09 Score=95.10 Aligned_cols=69 Identities=22% Similarity=0.426 Sum_probs=47.3
Q ss_pred ceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEece-----EEeCCccccchhhHHhhhcCCccceEeCCCcEEee
Q 009817 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT-----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s-----~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~ 475 (524)
++.||++|.|+ ++.|. .++||++|.|+++|.|.++ +|+.+ +.|+.++.|.+
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 77 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLHG 77 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEee
Confidence 45556666665 34443 3578888888888888764 44544 77788888877
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
++|++++.||.++.+...
T Consensus 78 ~~Ig~~~~Ig~~~~v~~~ 95 (153)
T cd04645 78 CTIGDNCLIGMGAIILDG 95 (153)
T ss_pred eEECCCCEECCCCEEcCC
Confidence 888888888877777643
No 135
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.94 E-value=4.1e-09 Score=92.35 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=27.2
Q ss_pred ceEECCCCEEC-ceEE-eceEEcCCcEECCCCEEeceEEeCC
Q 009817 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+++||++|.|+ ++.+ .+++||++|.|++++.|.++.+.+.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~ 57 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS 57 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc
Confidence 57777777777 4555 3577777777777777776554443
No 136
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=4.3e-09 Score=113.40 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=78.7
Q ss_pred CCCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhH-Hhhh
Q 009817 383 PKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLL 458 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~ 458 (524)
+...|.+.+.++.++.|+ .+.|.+++||++|.|+ ++.|. +|+||.+|.||++++|.++.+..+..++....+ .+.+
T Consensus 279 ~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~i 358 (446)
T PRK14353 279 PNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATI 358 (446)
T ss_pred CCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEE
Confidence 344444455555556664 3667789999999999 67776 799999999999999998888877655544332 3456
Q ss_pred cCCccceEeCCCcEEe--------eeEECCCCEECCCcEEeCC
Q 009817 459 AEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 459 ~~g~~~~~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~~~ 493 (524)
+++ +.||.++.+. +++||+++.||.+++|...
T Consensus 359 g~~---~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 398 (446)
T PRK14353 359 GAG---ANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP 398 (446)
T ss_pred cCC---cEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence 666 7777776651 5788888888888888765
No 137
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.92 E-value=5.9e-09 Score=104.37 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=12.2
Q ss_pred eEEcCCcEECCCCEEeceEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.||.+|.||++|+|...+++++
T Consensus 145 a~IG~~a~IG~nv~I~~gv~I~g 167 (272)
T PRK11830 145 ATVGSCAQIGKNVHLSGGVGIGG 167 (272)
T ss_pred cEECCCCEECCCcEECCCccCCC
Confidence 45555555555555554444443
No 138
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.6e-09 Score=108.82 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=80.4
Q ss_pred CCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
+-+..+..+++.|+|+ ++.|+.|+||.+|.|+ ++.|.+|+|-+++.||+||.|++|+|..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 4456678889999996 6899999999999999 69999999999999999999999999998
Q ss_pred cceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++||+++.++||+||++=++.+..+-.+-
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 89999999999999999999866555443
No 139
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.92 E-value=9.5e-09 Score=99.08 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=32.6
Q ss_pred cCCCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEec-eEEcCCcEECCCCEE
Q 009817 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVEL 437 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I 437 (524)
+++...+...+.++++++|.. +.| .++.||++|.|+ ++.|.+ ++||+++.|++++.|
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 344444555555555555543 555 357777777776 455543 566666666666655
No 140
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.91 E-value=7.7e-09 Score=103.88 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEE-eceEEcCCcEECCCCEEeceEEeCCcc----ccchhhHHh
Q 009817 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADY----YQTESEIAS 456 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~~s~i~~~~~----~~~~~~~~~ 456 (524)
..|++++.+.|.++|++ +.|. .++|++++.|+ ++.| .+++|+.+++||++|.|....+++... |.. .....
T Consensus 3 ~~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g-~~~~v 81 (262)
T PRK05289 3 AKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKG-EPTRL 81 (262)
T ss_pred cccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccC-CCCeE
Confidence 45777788888887754 4443 24455555554 3333 244555555555555554333333210 000 01124
Q ss_pred hhcCCccceEeCCCcEEee--------eEECCCCEECCCcEEe
Q 009817 457 LLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIV 491 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~--------~iI~~~~~Ig~~~~i~ 491 (524)
.++++ +.|++++.|++ ++||+++.|+.++.|.
T Consensus 82 ~IG~~---~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~ 121 (262)
T PRK05289 82 VIGDN---NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVA 121 (262)
T ss_pred EECCC---CEECCCeEEecccccCCCeeEECCceEECCCCEEC
Confidence 45555 55555555543 3566666666666655
No 141
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.90 E-value=6.4e-09 Score=108.48 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=32.0
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEEcCCCEeCCCcc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TIIMEKATIEDGMV 523 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtv 523 (524)
+.||++++|. .+.|++|++||+++.|.... ...+.++...|..+. +.||+++.|+++++
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~ 293 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSG 293 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCe
Confidence 4555566664 35566666666666666553 334445555554442 24555666655554
No 142
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.90 E-value=8.3e-09 Score=102.52 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCCCCccCCCeEEcCeee-eceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeC
Q 009817 387 FYTSPRFLPPTKIDNCRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i-~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
+...+.+++++.|....| .++.||+||.|.. +++||.+|+||++|.|.....++
T Consensus 109 i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~Ig 163 (269)
T TIGR00965 109 VRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIG 163 (269)
T ss_pred ECCCcEECCCCEEeeeEEcCCcEECCCCEECC----CcEECCCCEECCCCEEcCCcccC
Confidence 333344444444432222 1345556665552 35677777777777775544443
No 143
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.89 E-value=4.2e-08 Score=102.09 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=77.2
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.+.+||||||+|+||+ .+|.|+|+.|+ ||++|+++.+.. .+++|+|+++... . ..+ . +.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~---~----~~~-~----~~-- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ---W----QGT-P----LE-- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH---h----hhc-c----cc--
Confidence 6789999999999996 58999999999 999999988865 4889988886421 1 111 0 00
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cccC-HHHHHHHH
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSH 237 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~d-l~~ll~~h 237 (524)
.+.++.... +.+|...+|+.++.... .+.++++.||+- ...+ +..+++.+
T Consensus 219 ~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 133333222 23599999999987643 358899999994 4444 56666654
No 144
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.89 E-value=1e-08 Score=96.65 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=13.2
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.|+.++.|. +|+|+++|.||.++.|..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4444444442 345555555555554444
No 145
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.89 E-value=1.3e-08 Score=83.27 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCCeEEc-Ceee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 394 LPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 394 ~p~~~i~-~~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
.|+++|+ ++.| .+++|+++|.|+ ++.|.+|+|+.+++|++++.|.+++++.+ +.|+++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~ 63 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRW 63 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCC
Confidence 3444552 3444 368999999997 78999999999999999999999999988 899999
Q ss_pred cEEee-eEECCCCEECC
Q 009817 471 TKIRN-CIIDKNVKIGK 486 (524)
Q Consensus 471 ~~I~~-~iI~~~~~Ig~ 486 (524)
+.+.+ ++|+++++||+
T Consensus 64 ~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 64 TRLENVTVLGDDVTIKD 80 (80)
T ss_pred cEEecCEEECCceEECC
Confidence 99987 88888888774
No 146
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.89 E-value=1.7e-08 Score=93.21 Aligned_cols=95 Identities=15% Similarity=0.292 Sum_probs=73.0
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEE-----eceEEcCCcEECCCCEEeceEEeCCccc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 448 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i-----~~siIg~~~~Ig~~~~I~~s~i~~~~~~ 448 (524)
++++.+.+.....+++++.|+ +|.|. ++.||++|.|+ +|.| .+|+||+++.|+.++.|.++.+...
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~--- 84 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN--- 84 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC---
Confidence 344555555556666666664 46664 37889999998 5777 5689999999999999998777766
Q ss_pred cchhhHHhhhcCCccceEeCCCcEEee-eEECCCCEECCCcEEeCC
Q 009817 449 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|.+ ++|++++.||.++.+...
T Consensus 85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~ 114 (155)
T cd04745 85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114 (155)
T ss_pred ----------------CEECCCCEEeCCCEECCCCEECCCCEeCCC
Confidence 89999999864 889999999998888764
No 147
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.88 E-value=1.1e-08 Score=82.93 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=62.4
Q ss_pred cCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 393 i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
++++++|+ ++.|.+++|+++|.|+ ++.|.+++|+++++|+++++|.+++++++ +.|+.+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 45677775 4777789999999998 68899999999999999999999888888 888888
Q ss_pred cEEe-eeEECCCCEECC
Q 009817 471 TKIR-NCIIDKNVKIGK 486 (524)
Q Consensus 471 ~~I~-~~iI~~~~~Ig~ 486 (524)
+.|. +++|+++++||+
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8775 577777777664
No 148
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.88 E-value=1.3e-08 Score=101.81 Aligned_cols=132 Identities=13% Similarity=0.106 Sum_probs=65.2
Q ss_pred CCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhh
Q 009817 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL 458 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~ 458 (524)
|.+.|.+++.++++++|+. +.| .++.||++|.|+ ++.|. ++.||++|+|++++.|...-- ...+..+ .-...+
T Consensus 4 ~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~--~~~~~g~-~~~v~I 80 (254)
T cd03351 4 PTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQ--DLKYKGE-PTRLEI 80 (254)
T ss_pred CCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCccc--ceeecCC-CceEEE
Confidence 4444555555555555542 333 256777777777 34443 366666666666666642000 0000000 001223
Q ss_pred cCCccceEeCCCcEEe--------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecC-----cEEEcCCCEeCCCcc
Q 009817 459 AEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSG-----ITIIMEKATIEDGMV 523 (524)
Q Consensus 459 ~~g~~~~~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g-----~~vv~~~~~i~~gtv 523 (524)
+++ +.|++++.|. .++||+|+.|+.++.|... ....++.+|..+ -++||+++.|+++++
T Consensus 81 G~~---~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~ 152 (254)
T cd03351 81 GDN---NTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHD---CVIGNNVILANNATLAGHVEIGDYAIIGGLSA 152 (254)
T ss_pred CCC---CEECCccEEeccccCCCCceEECCCCEECCCCEECCC---CEECCCcEECCCccccCCcEeCCCcEECCcce
Confidence 333 6777777775 3777788888877777532 223333344333 134555555554443
No 149
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.87 E-value=8.4e-09 Score=111.48 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=72.9
Q ss_pred ccCCCeEEcCeeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhH-HhhhcCCccceEeC
Q 009817 392 RFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVG 468 (524)
Q Consensus 392 ~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~~~Ig 468 (524)
.++.++.|..+.+.+++||++|.|+ ++.|. +++||++|+|+.+++|+++++..+...+....+ .+.++++ +.||
T Consensus 302 ~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~---~~ig 378 (458)
T PRK14354 302 TIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGEN---VNIG 378 (458)
T ss_pred EECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCc---eEEc
Confidence 3444555544555678888888888 57776 688888888888888888887777554444322 2233333 3333
Q ss_pred CCcEEee--eEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCC
Q 009817 469 RNTKIRN--CIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIED 520 (524)
Q Consensus 469 ~~~~I~~--~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~ 520 (524)
.++.+.+ ..-.-+++||+++.|.... ....|..|+.+ ++|+.++.|..
T Consensus 379 ~~~~~~~~~~~~~~~~~igd~~~ig~~s---~i~~~~~ig~~-~~v~~~~~v~~ 428 (458)
T PRK14354 379 CGTITVNYDGKNKFKTIIGDNAFIGCNS---NLVAPVTVGDN-AYIAAGSTITK 428 (458)
T ss_pred CceeecccccccccCCEECCCcEEccCC---EEeCCcEECCC-CEECCCCEECC
Confidence 3333311 0001135556666665542 34567788877 77777776643
No 150
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.86 E-value=1.8e-08 Score=97.35 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=29.6
Q ss_pred eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 402 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.|.++.||++|.|+ +|.|.+++||.+|.|+.++.|.++.|...
T Consensus 15 a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~ 59 (204)
T TIGR03308 15 AELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKF 59 (204)
T ss_pred cEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCC
Confidence 444566677777777 46666777777777777777766655555
No 151
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.85 E-value=1.9e-08 Score=100.58 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeC
Q 009817 387 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 387 i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
|++++.+.|.+.|+. +.|. .++|++++.|+ ++.|. +++|..+++||+++.|.....++
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 567777888888753 5553 25555566665 34442 55555566666666665443343
No 152
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.85 E-value=2.1e-08 Score=93.62 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=65.4
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEEece-----------EEcCCcEECCCCEEeceEEe
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHS-----------IVGERSRLDYGVELKDTVML 443 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i~~s-----------iIg~~~~Ig~~~~I~~s~i~ 443 (524)
+++.+.+.....+++++.|+ .+.+. ++.||++|.|+ ++.|.++ .||+++.|+.++.|.+++|.
T Consensus 8 I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IG 87 (164)
T cd04646 8 VCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIG 87 (164)
T ss_pred ECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEEC
Confidence 34444444555556666664 35552 46899999998 6777653 57788888888888776555
Q ss_pred CCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 444 GADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++ +.||.++.| .++.|++++.||.+++|...
T Consensus 88 d~-------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 88 NN-------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred CC-------------------CEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 55 788888888 56888888888888888764
No 153
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.85 E-value=2e-08 Score=100.53 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=14.0
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.| .+++||++|.||.++.|..+
T Consensus 183 v~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 183 CFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred CEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 444444444 34555555555555555443
No 154
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.84 E-value=4.8e-08 Score=93.01 Aligned_cols=20 Identities=20% Similarity=-0.056 Sum_probs=10.9
Q ss_pred eEeecCCHHHHHHHHHHhhc
Q 009817 354 YWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 354 ~w~dIgt~~d~~~An~~l~~ 373 (524)
++..++.++...+....+.+
T Consensus 62 ~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHh
Confidence 45566655655555544443
No 155
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.84 E-value=1.2e-08 Score=109.89 Aligned_cols=67 Identities=25% Similarity=0.463 Sum_probs=40.5
Q ss_pred eEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 407 siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
+.||++|.|+ ++.|.+|+||.+|+|+ ++.+.++++ +++ +.||.++.|+ +|+|+++|.|
T Consensus 281 ~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~i----------------g~~---~~I~~~~~I~~~~~Ig~~~~I 340 (450)
T PRK14360 281 TVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQI----------------GDG---VKIGPYAHLRPEAQIGSNCRI 340 (450)
T ss_pred cEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccc----------------cCC---cEECCCCEECCCCEEeCceEE
Confidence 4455555554 3445555555555553 334444444 444 7788888886 6888888888
Q ss_pred CCCcEEeCC
Q 009817 485 GKDVVIVNK 493 (524)
Q Consensus 485 g~~~~i~~~ 493 (524)
|.++.|.+.
T Consensus 341 g~~~~i~~~ 349 (450)
T PRK14360 341 GNFVEIKKS 349 (450)
T ss_pred CCCEEEecc
Confidence 887777654
No 156
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.82 E-value=2.6e-08 Score=93.23 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=61.3
Q ss_pred ceEECCCCEEC-ceEEe-----ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee-eEE
Q 009817 406 DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CII 478 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~-----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~-~iI 478 (524)
++.||++|+|+ ++.|. ++.||++|.|++++.|.... +. ...++++ +.|+.++.|.. |+|
T Consensus 20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~--~~---------~v~Ig~~---~~I~~~~~i~g~~~I 85 (167)
T cd00710 20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE--GY---------SVWIGKN---VSIAHGAIVHGPAYI 85 (167)
T ss_pred eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC--CC---------CEEECCC---ceECCCCEEeCCEEE
Confidence 45566666666 34443 46888888888888885210 00 0112222 77888888864 999
Q ss_pred CCCCEECCCcEEeCCCCCCCCCCceEEecCc----EEEcCCCEeCCCcc
Q 009817 479 DKNVKIGKDVVIVNKDEADRPELGFYIRSGI----TIIMEKATIEDGMV 523 (524)
Q Consensus 479 ~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~----~vv~~~~~i~~gtv 523 (524)
|++|.||.++.|.+. ...++..|+.+. ..|++++.++++++
T Consensus 86 g~~~~Ig~~~~I~~~----~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 86 GDNCFIGFRSVVFNA----KVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred CCCCEECCCCEEECC----EECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 999999999998764 344444444442 24455666665554
No 157
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.80 E-value=3e-08 Score=94.95 Aligned_cols=95 Identities=13% Similarity=0.271 Sum_probs=67.6
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEE-----eceEEcCCcEECCCCEEeceEEeCCccc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 448 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i-----~~siIg~~~~Ig~~~~I~~s~i~~~~~~ 448 (524)
++++.+.+.....+++++.|. +|.|. +++||++|.|+ +|.| .+|+||++++|++++.|+++++..+
T Consensus 16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~--- 92 (192)
T TIGR02287 16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN--- 92 (192)
T ss_pred EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC---
Confidence 334444444444444555553 35553 35677777777 4666 5699999999999999999888877
Q ss_pred cchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 449 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|. +++|++++.||+++.+...
T Consensus 93 ----------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 93 ----------------ALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ----------------CEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 8888888885 5888888888888877754
No 158
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.80 E-value=1.9e-08 Score=109.56 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=35.7
Q ss_pred ccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCcccc
Q 009817 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 392 ~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
.+++++.|+ ++.|. +++||+||.|+ ++.|++|+||++|.|+. +.+.++++..+..++
T Consensus 273 ~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig 332 (482)
T PRK14352 273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVG 332 (482)
T ss_pred EECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEEC
Confidence 334444442 24443 47777788887 67777777777777763 667777776664333
No 159
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.79 E-value=3.2e-08 Score=84.87 Aligned_cols=67 Identities=10% Similarity=0.215 Sum_probs=55.5
Q ss_pred ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCE
Q 009817 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~ 483 (524)
+++|+++|.|+ ++.|. +++||.+|+|+. +|.++++++. +.|+++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 56777777776 45554 488888888864 6789999988 8899999999999999999
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
||+++.+.|.
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 9999999875
No 160
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.79 E-value=5e-08 Score=90.79 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=66.3
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEEC
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (524)
++.|+++|.|.+ .+..+.||++|.|+++|.|.++...... ........++++ +.|++++.+.+++|++++.||
T Consensus 27 ~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~---~~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig 99 (161)
T cd03359 27 KTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSK---GVAFFPLHIGDY---VFIGENCVVNAAQIGSYVHIG 99 (161)
T ss_pred ceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCC---CccccCeEECCc---cEECCCCEEEeeEEcCCcEEC
Confidence 455666665552 2234689999999999999875432221 001112345555 788888888888999999999
Q ss_pred CCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 486 KDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 486 ~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+++.|.... ...++..|+.| ++|.+++.|+++++
T Consensus 100 ~~~~Ig~~~---~I~~~~~i~~g-~~V~~~~~i~~~~v 133 (161)
T cd03359 100 KNCVIGRRC---IIKDCVKILDG-TVVPPDTVIPPYSV 133 (161)
T ss_pred CCCEEcCCC---EECCCcEECCC-CEECCCCEeCCCCE
Confidence 988887652 33334444444 35555555555554
No 161
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.79 E-value=3e-06 Score=90.80 Aligned_cols=346 Identities=15% Similarity=0.179 Sum_probs=193.7
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeec-CcchhHHHHHHHHHhc----CCC-eEEEEeccC-chhHHHHHHHhhh
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYF 164 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~-~~~l~~hl~~~y~ 164 (524)
.+++.+|.||||.||||+ ..-||.++|+. |+ .++|..++++... |.+ -.+|.+.++ .++..+++. .|-
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~-k~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVE-KYT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHH-HcC
Confidence 478899999999999997 35899999995 56 8999998887653 432 447788876 455777774 341
Q ss_pred cCCcccCCCeEEEEc---------cccC----CC-CCCCCcc-cCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc
Q 009817 165 GNGTNFGDGFVEVLA---------ATQT----PG-ESGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR 227 (524)
Q Consensus 165 ~~~~~~~~~~V~vl~---------~~q~----~~-e~~~~~~-~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~ 227 (524)
.+.. .|.++. +... .+ .+...|+ -|.++...... ..++++...+.+++.+.+.|.+..
T Consensus 152 ----~~~~-~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga 226 (469)
T PLN02474 152 ----NSNI-EIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGA 226 (469)
T ss_pred ----CCcc-ceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCcccc
Confidence 1111 122111 0000 00 0111243 56666544332 224444456889999999999764
Q ss_pred cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcce
Q 009817 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVA 306 (524)
Q Consensus 228 ~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~ 306 (524)
.-=-.++..|.++++++++=+.+...+. ..-|. +..|..-++.++.+-|.....+ .+ + ...-.+.
T Consensus 227 ~vDp~~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~dgk~~lvEysqvp~e~~~~---f~-~---------~~kf~~f 292 (469)
T PLN02474 227 IVDLKILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKVQLLEIAQVPDEHVNE---FK-S---------IEKFKIF 292 (469)
T ss_pred ccCHHHHHHHHhcCCceEEEEeecCCCC-CCccEEEEECCEEEEEEEecCCHHHHHh---hc-c---------cccceee
Confidence 3224577888888998887666544322 22343 4445444577788766543210 00 0 0123577
Q ss_pred eeeEEEEeHHHHHHHHHhhCC--------CCCc---hh--hhhHHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHh
Q 009817 307 SMGVYVFKKDVLFKLLRWRYP--------TSND---FG--SEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 307 ~~GIYvf~~~vL~~ll~~~~~--------~~~d---~~--~dii~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l 371 (524)
+++.+.|+-+.|.++++.... ...+ +. +..+-.+++- .+..++.++ ..+.-+-+..|++.+..++
T Consensus 293 Ntnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdl 372 (469)
T PLN02474 293 NTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDL 372 (469)
T ss_pred eeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHH
Confidence 999999999999887653210 0001 00 0011122221 234444443 2366788888888888776
Q ss_pred hccCCCccccCCCCCCCCCC--ccCCCe-EEcC--eeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCc
Q 009817 372 TKESPAFHFYDPKTPFYTSP--RFLPPT-KIDN--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD 446 (524)
Q Consensus 372 ~~~~~~~~~~~~~~~i~~~~--~i~p~~-~i~~--~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~ 446 (524)
.......-...+.....+.+ .++|.. +++. .+.. +--..++ | .+-.|--+++.|.|+.+++++++.+
T Consensus 373 y~l~~~~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~-~--d~LtV~Gdv~fG~~v~l~G~v~i~~- 444 (469)
T PLN02474 373 YTLVDGFVIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE-L--DSLKVSGDVWFGSGIVLKGKVTITA- 444 (469)
T ss_pred HHhccCeEEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc-C--CeEEEeeeeEECCCcEEEEEEEEEc-
Confidence 54432221111111111111 222221 1111 2221 1111121 1 2345556699999999999998876
Q ss_pred cccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 447 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 447 ~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
++..|+.|.+|++++|++|-.+.
T Consensus 445 -------------~~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 445 -------------KSGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred -------------CCCCeeecCCCcEecceeecccC
Confidence 34456899999999998886654
No 162
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.78 E-value=2.9e-08 Score=107.46 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=45.3
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEEC
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (524)
++.|+++|.|++ +++||++|.|+++|.|.+++|+.+ +.|++++.|.+|+|++++.||
T Consensus 274 ~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig 330 (459)
T PRK14355 274 DTTIYPGVCISG----DTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIG 330 (459)
T ss_pred CCEEeCCcEEeC----CCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEEC
Confidence 455555555553 589999999999999999988888 666666666666666666655
Q ss_pred CCcEEeC
Q 009817 486 KDVVIVN 492 (524)
Q Consensus 486 ~~~~i~~ 492 (524)
.++.|..
T Consensus 331 ~~~~i~~ 337 (459)
T PRK14355 331 PMAHLRP 337 (459)
T ss_pred CCCEECC
Confidence 5554443
No 163
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.78 E-value=5.1e-08 Score=88.39 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=16.4
Q ss_pred ceEECCCCEECc-eEE-eceEEcCCcEECCCCEEe
Q 009817 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELK 438 (524)
Q Consensus 406 ~siIg~g~~I~~-~~i-~~siIg~~~~Ig~~~~I~ 438 (524)
++.|+++|.|.. +.| .++.||++|.|+.++.|.
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 355666666662 333 234555555555555544
No 164
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.77 E-value=4.1e-08 Score=97.60 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEECceEE-eceEEcCCcEECCCCEEe
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELK 438 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~~~~i-~~siIg~~~~Ig~~~~I~ 438 (524)
..|+.|++.+.. .+.||+||+|..+.| .++.||++|.|+.++.|.
T Consensus 100 ~~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG 145 (269)
T TIGR00965 100 GFRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVG 145 (269)
T ss_pred CEEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEEC
Confidence 445555555543 456666666653322 134555555555555554
No 165
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=2.9e-07 Score=87.51 Aligned_cols=219 Identities=18% Similarity=0.201 Sum_probs=138.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
++..|||+|-|...|. ..|-+.+++|+ |||.|+++++.+++ |++|+|-+ .++.+.+.. +.| |
T Consensus 2 ~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~y-------g 64 (228)
T COG1083 2 MKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KKY-------G 64 (228)
T ss_pred cceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HHh-------C
Confidence 4557999999999998 46999999999 99999999999997 67877666 345555443 333 3
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcC--ceecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCG--DHLYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~g--D~l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.. +.+..+..... +- ..|-+++.++...+.+ ..+.++++.+ ..+...++.+.++.+.+++.+-.+.+.
T Consensus 65 ak-~~~~Rp~~LA~----D~-ast~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~ 134 (228)
T COG1083 65 AK-VFLKRPKELAS----DR-ASTIDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV 134 (228)
T ss_pred cc-ccccCChhhcc----Cc-hhHHHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe
Confidence 11 21222211111 10 1344566666666542 3344666655 345567899999999998888888887
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
+.... + |-... +++|.+..+.|.|...... +. ....|..+..+|+++.+.|.+ . .
T Consensus 135 e~e~~-p--~k~f~-~~~~~~~~~~~~~~~~~rr-------------Q~-Lpk~Y~~NgaiYi~~~~~l~e---~----~ 189 (228)
T COG1083 135 ECEHH-P--YKAFS-LNNGEVKPVNEDPDFETRR-------------QD-LPKAYRENGAIYINKKDALLE---N----D 189 (228)
T ss_pred ecccc-h--HHHHH-hcCCceeecccCCcccccc-------------cc-chhhhhhcCcEEEehHHHHhh---c----C
Confidence 77542 1 11111 2347888888776322110 00 013467788999999998753 1 1
Q ss_pred CchhhhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHhhc
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l~~ 373 (524)
.-|. .+...|..+. ...||++..||..|+..+..
T Consensus 190 ~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 190 CFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred ceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 2345556553 36799999999999876643
No 166
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.74 E-value=5.4e-08 Score=93.79 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=69.1
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEece-------------EE
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDT-------------VM 442 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s-------------~i 442 (524)
.++|.+-|.+.+.++++++|+. |.|. ++.|++|+.|+ ++.|+ ++.||.+++|-+.+.|.+. +|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 4455555555555555555554 4443 46666666666 34333 3445544443333332210 00
Q ss_pred eCCccccchhhH--HhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC-CCCCC-CCceEEecCc------EE
Q 009817 443 LGADYYQTESEI--ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD-EADRP-ELGFYIRSGI------TI 511 (524)
Q Consensus 443 ~~~~~~~~~~~~--~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~-e~~~~-~~~~~i~~g~------~v 511 (524)
..++.+-.++.+ -+.-+.| -+.||+|+.+- +|.|..+|+||.+|++.|.. -+.++ -+++.|-+|. +.
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g--~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr 162 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGG--VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR 162 (260)
T ss_pred CCCCeEeeEEEEeccccCCce--eEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence 111111111111 1111222 25566666663 78888999999999999986 11111 1223333443 36
Q ss_pred EcCCCEeCCCc
Q 009817 512 IMEKATIEDGM 522 (524)
Q Consensus 512 v~~~~~i~~gt 522 (524)
||+.|.|+-.+
T Consensus 163 IG~~amiGg~S 173 (260)
T COG1043 163 IGAHAMIGGLS 173 (260)
T ss_pred Ecchheecccc
Confidence 77777776554
No 167
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.74 E-value=9.6e-08 Score=92.08 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCCCCCCCCccCCCeEEcC-eeeec-eEECCCCEEC-ceEE-eceEEcCCcEECCCCEEeceEEeC
Q 009817 382 DPKTPFYTSPRFLPPTKIDN-CRIKD-AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~-~~i~~-siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
.+...+.+.+.+.++++|+. +.|.+ ++|++++.|+ ++.| .++.|+.+++||+++.|.....++
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 71 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIG 71 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEc
Confidence 34555666666666666643 44433 6666666666 3444 356666666666777776544443
No 168
>PLN02296 carbonate dehydratase
Probab=98.73 E-value=7.4e-08 Score=96.75 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=77.7
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEEe-----------ceEEcCCcEECCCCEEeceEE
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVE-----------HSIVGERSRLDYGVELKDTVM 442 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i~-----------~siIg~~~~Ig~~~~I~~s~i 442 (524)
+++|.+.+.....+++++.|. +|.|. +++||++|.|+ ++.|. +|+||++|+|+.+|.|.++++
T Consensus 60 ~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~I 139 (269)
T PLN02296 60 FVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTV 139 (269)
T ss_pred EECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEE
Confidence 455555555555566666663 45553 35788999998 56663 589999999999999988776
Q ss_pred eCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCE
Q 009817 443 LGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKAT 517 (524)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~ 517 (524)
.++ +.||.++.| .++.|++++.||.++.|... ..|.++.++.|..+.
T Consensus 140 gd~-------------------v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~---------~~I~~~~~~~G~PA~ 187 (269)
T PLN02296 140 EDE-------------------AFVGMGATLLDGVVVEKHAMVAAGALVRQN---------TRIPSGEVWAGNPAK 187 (269)
T ss_pred CCC-------------------cEECCCcEECCCeEECCCCEECCCCEEecC---------CEeCCCeEEeccCcE
Confidence 666 788888888 46888888888888888765 345555555555443
No 169
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.73 E-value=1.2e-07 Score=87.69 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=72.5
Q ss_pred cccCCCCCCCCCCccCCCeEEc-Ceeeec----eEECCCCEEC-ceEEec-----eEEcCCcEECCCCEEeceEEeCCcc
Q 009817 379 HFYDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADY 447 (524)
Q Consensus 379 ~~~~~~~~i~~~~~i~p~~~i~-~~~i~~----siIg~g~~I~-~~~i~~-----siIg~~~~Ig~~~~I~~s~i~~~~~ 447 (524)
.++++.+.+.....+++++.|. ++.|.. ++||++|.|+ +|.|.+ ++||+++.|+.++.|.++++..+
T Consensus 7 ~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~-- 84 (154)
T cd04650 7 AYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY-- 84 (154)
T ss_pred eEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC--
Confidence 3455555555556666666664 466654 4899999998 677764 89999999999999988776666
Q ss_pred ccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 448 YQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 448 ~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.+. +++|++++.|+.++.+..+
T Consensus 85 -----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 85 -----------------VIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred -----------------CEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence 8888888884 6888888888888877764
No 170
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.72 E-value=1e-07 Score=86.35 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeC
Q 009817 387 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 387 i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
|.+++++.++++|.. +.|. .+.|+.++.|+ ++.|. ++.|+.+++||++|.|.....++
T Consensus 4 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred cCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 444555555666643 4443 46677777777 35553 36666677777777775444443
No 171
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.72 E-value=8.5e-07 Score=95.70 Aligned_cols=210 Identities=20% Similarity=0.246 Sum_probs=125.7
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc--------------CCCeEEEEec-cCchh
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GINKIFVLTQ-FNSAS 154 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s--------------Gi~~I~Ivt~-~~~~~ 154 (524)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++++... .+ .++|+|. ++.+.
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~I-p~~IMTS~~t~~~ 179 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTI-YILVLTSSFNHDQ 179 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCC-CEEEEeCcchHHH
Confidence 45899999999999996 57899999995 78 9999999999874 23 4555554 66777
Q ss_pred HHHHHHH-hhhcCCcccCCCeEEEEccccCCC---CCCC---------C-cccCcHHHHHHHH--HHHHhhhcCCCCeEE
Q 009817 155 LNRHIAR-TYFGNGTNFGDGFVEVLAATQTPG---ESGK---------N-WFQGTADAVRQFT--WVFEDAKNRNIENVA 218 (524)
Q Consensus 155 l~~hl~~-~y~~~~~~~~~~~V~vl~~~q~~~---e~~~---------~-~~~Gta~al~~a~--~~i~~~~~~~~e~~L 218 (524)
+.+++.+ .||+-. ...|.++....-|- +.++ . .+-|.++..+... ..++++...+.+++.
T Consensus 180 t~~~f~~~~~FGl~----~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 255 (482)
T PTZ00339 180 TRQFLEENNFFGLD----KEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQ 255 (482)
T ss_pred HHHHHHhccccCCC----cccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEE
Confidence 8777753 223311 11122211100000 0010 1 1247777555443 235555557889999
Q ss_pred EEcCceecc-cCHHHHHHHHHHcCC-cEEEEEEEcCCCCCCcceEEE-ECCCCcEEEEEecCCcccccccccccccccCC
Q 009817 219 ILCGDHLYR-MDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFS 295 (524)
Q Consensus 219 vl~gD~l~~-~dl~~ll~~h~~~~a-d~tl~~~~~~~~~a~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~ 295 (524)
+.+.|.+.- .-=-.|+-.+.+.++ ++.-.+.+.... +.-|++. .|..-.|+++.|-+..... ...-+++.+
T Consensus 256 v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~--EkvG~~~~~~g~~~vvEYsEi~~~~~~-~~~~~~g~l--- 329 (482)
T PTZ00339 256 VISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDD--ESVGVFCLKDYEWQVVEYTEINERILN-NDELLTGEL--- 329 (482)
T ss_pred EEecCcccccccCHHHhHHHHHCCchhheeeeecCCCC--CceeEEEEeCCcccEEEEeccChhhhh-cccccCCee---
Confidence 999999743 333456677777777 655444443322 3456553 4444467888776543221 000011111
Q ss_pred ccccccCCcceeeeEEEEeHHHHHHHHH
Q 009817 296 PQEARKCPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 296 ~~~~~~~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
.-...++..++|+.++|.++.+
T Consensus 330 ------~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 ------AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ------cccccceEEEEEEHHHHHHHhh
Confidence 1256788999999999987654
No 172
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.72 E-value=9.3e-08 Score=88.06 Aligned_cols=94 Identities=11% Similarity=0.155 Sum_probs=70.9
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEEec-----eEEcCCcEECCCCEEeceEEeCCcccc
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i~~-----siIg~~~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
+++.+.+.....+++++.|. ++.|. +++||++|.|+ ++.|.. ++||+++.|+.+|.|.++++.++
T Consensus 8 i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---- 83 (153)
T cd04645 8 IAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN---- 83 (153)
T ss_pred ECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC----
Confidence 34444444445556666664 35553 36899999998 677776 59999999999999999887777
Q ss_pred chhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 450 TESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 450 ~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|+.++.|. +++|++++.||.++.+...
T Consensus 84 ---------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 84 ---------------CLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred ---------------CEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 8899998886 7888888888888877543
No 173
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.69 E-value=8e-08 Score=92.27 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=47.4
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEEC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG 485 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig 485 (524)
+.|+++|.|+.....+|+||+++.||+++.|.++++.++ +.||.++.|. ++.||+++.|+
T Consensus 56 ~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~-------------------v~IG~ga~V~~g~~IG~~s~Vg 116 (196)
T PRK13627 56 ANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD-------------------ALVGMNSVIMDGAVIGEESIVA 116 (196)
T ss_pred CEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC-------------------CEECcCCccCCCcEECCCCEEc
Confidence 444455555433334688999999999998888776666 7888877774 57777777777
Q ss_pred CCcEEeCC
Q 009817 486 KDVVIVNK 493 (524)
Q Consensus 486 ~~~~i~~~ 493 (524)
.++.+...
T Consensus 117 ags~V~~~ 124 (196)
T PRK13627 117 AMSFVKAG 124 (196)
T ss_pred CCCEEeCC
Confidence 77777654
No 174
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.68 E-value=4.9e-08 Score=103.03 Aligned_cols=90 Identities=13% Similarity=0.216 Sum_probs=74.1
Q ss_pred cCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhc
Q 009817 381 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 459 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~ 459 (524)
+.+.+.+ ..+.|++++.|.+ .+.+|+||++|.|+ +|.|++|+|+++|+|+++|+|.++++..+
T Consensus 285 i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------- 348 (380)
T PRK05293 285 IAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------- 348 (380)
T ss_pred ECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC--------------
Confidence 3444444 2445666666643 46689999999998 78999999999999999999999999988
Q ss_pred CCccceEeCCCcEEee-----eEECCCCEECCCcEEe
Q 009817 460 EGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIV 491 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~~-----~iI~~~~~Ig~~~~i~ 491 (524)
+.||.++.|++ .+||++++|+.+++|.
T Consensus 349 -----~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -----AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -----CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999987 8999999999988763
No 175
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.65 E-value=7e-08 Score=89.71 Aligned_cols=95 Identities=13% Similarity=0.223 Sum_probs=60.6
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceee----eceEECCCCEECceEEec------eEEcCCcEECCCCEEeceEEeCCccc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRI----KDAIISHGCFLRECTVEH------SIVGERSRLDYGVELKDTVMLGADYY 448 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i----~~siIg~g~~I~~~~i~~------siIg~~~~Ig~~~~I~~s~i~~~~~~ 448 (524)
|++|++.+..++++++.+.|- ++.+ .+-.||++|.|.+.++-| +.||++++||++|.|++|.+-.+
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 556666666666666666663 2333 346677777777544433 57788888887777777555555
Q ss_pred cchhhHHhhhcCCccceEeCCCcEEee-eEECCCCEECCCcEEeCC
Q 009817 449 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||=|+.|-| |.||++|.||+++.+..+
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcccCC
Confidence 66666666654 666666666666666655
No 176
>PLN02472 uncharacterized protein
Probab=98.64 E-value=2.4e-07 Score=91.96 Aligned_cols=68 Identities=6% Similarity=0.182 Sum_probs=45.4
Q ss_pred eEECCCCEEC-ceEE-----------eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-
Q 009817 407 AIISHGCFLR-ECTV-----------EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI- 473 (524)
Q Consensus 407 siIg~g~~I~-~~~i-----------~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I- 473 (524)
.+||++|.|+ +|.| .+++||++|+||++|.|.+++|.++ +.||.++.|
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~-------------------v~IG~~svI~ 159 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE-------------------CIIGQHSILM 159 (246)
T ss_pred eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC-------------------CEECCCCEEC
Confidence 4555556555 3444 2588999999999988887666666 677777666
Q ss_pred eeeEECCCCEECCCcEEeCC
Q 009817 474 RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.+++|++++.||.++.+..+
T Consensus 160 ~gavIg~~~~Ig~gsvV~~g 179 (246)
T PLN02472 160 EGSLVETHSILEAGSVLPPG 179 (246)
T ss_pred CCCEECCCCEECCCCEECCC
Confidence 35666666666666655543
No 177
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.63 E-value=1.5e-07 Score=100.87 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=43.4
Q ss_pred ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEE
Q 009817 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~I 484 (524)
++.||++|.|+ ++.|.+|+||++|.|+. +.|.++++.++ +.|+.++.|.+|+||+++.|
T Consensus 265 ~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~-------------------~~i~~~~~i~~~~ig~~~~i 324 (430)
T PRK14359 265 ECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPL-------------------AHIRPKSEIKNTHIGNFVET 324 (430)
T ss_pred ceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCC-------------------CEECCCcEEeccEEcCcEEE
Confidence 57888888887 67777888888888875 77778777777 55555555555555555544
Q ss_pred CC
Q 009817 485 GK 486 (524)
Q Consensus 485 g~ 486 (524)
+.
T Consensus 325 ~~ 326 (430)
T PRK14359 325 KN 326 (430)
T ss_pred cc
Confidence 44
No 178
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.62 E-value=1.8e-07 Score=92.13 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEec
Q 009817 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD 439 (524)
Q Consensus 387 i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~ 439 (524)
+...+.+++++.|. ++.|. +++||++|.|+ ++.|. +|+||++|+|+.++.|.+
T Consensus 95 I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~ 151 (231)
T TIGR03532 95 IRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG 151 (231)
T ss_pred EeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcc
Confidence 33333444444442 23332 47777777776 45553 577777777777777754
No 179
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.2e-07 Score=98.25 Aligned_cols=69 Identities=28% Similarity=0.541 Sum_probs=62.1
Q ss_pred eEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCC
Q 009817 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEAD 497 (524)
Q Consensus 418 ~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~ 497 (524)
+.+++|.|+.+|.|. | +|++|+++.+ +.|+++|.|++|+|.++|.||+||.|.+.
T Consensus 292 s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~~l~~a---- 346 (393)
T COG0448 292 SEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGAVLRRA---- 346 (393)
T ss_pred ceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCCEEEEE----
Confidence 346789999999999 4 9999999999 99999999999999999999999999985
Q ss_pred CCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 498 RPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 498 ~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+|.+|+.|++|++|
T Consensus 347 -------------IIDk~v~I~~g~~i 360 (393)
T COG0448 347 -------------IIDKNVVIGEGVVI 360 (393)
T ss_pred -------------EeCCCcEeCCCcEE
Confidence 78888888888765
No 180
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.61 E-value=6.3e-07 Score=84.35 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=3.7
Q ss_pred EeecCCH
Q 009817 355 WEDIGTI 361 (524)
Q Consensus 355 w~dIgt~ 361 (524)
+.-++++
T Consensus 60 iiai~~~ 66 (197)
T cd03360 60 VVAIGDN 66 (197)
T ss_pred EEecCCH
Confidence 4445565
No 181
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.58 E-value=2e-07 Score=97.67 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=33.9
Q ss_pred CccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 391 ~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.+++++.|++++|.+++|++||.|+ +|.|++|+|++++.|+++++|+++++..+
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~ 350 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN 350 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC
Confidence 45555566654455666666666666 46666666666666666666666555544
No 182
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.3e-07 Score=93.51 Aligned_cols=101 Identities=17% Similarity=0.267 Sum_probs=74.3
Q ss_pred cccCCCCCCCCCCccCCCeEEc-------CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccc
Q 009817 379 HFYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (524)
Q Consensus 379 ~~~~~~~~i~~~~~i~p~~~i~-------~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~ 450 (524)
.+++|++.+++++.|+|++.|+ ++|+.+|||-++|.|. +++|.||+||++|.||.+++++..-+..... .+
T Consensus 289 VyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~-~~ 367 (407)
T KOG1460|consen 289 VYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPN-LP 367 (407)
T ss_pred eEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCC-CC
Confidence 3778999999999999988874 3777899999999999 7999999999999999999998765554411 11
Q ss_pred hhhHHhhhcCCccceEeCCCcEEeeeEECCCCEE
Q 009817 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (524)
Q Consensus 451 ~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~I 484 (524)
+. .-+++|+. +.+++.+.+.||++-+|-.+
T Consensus 368 ~~-a~Tilga~---v~v~dev~v~~s~vlp~k~l 397 (407)
T KOG1460|consen 368 FA-ALTILGAD---VSVEDEVIVLNSIVLPNKEL 397 (407)
T ss_pred cc-eeEEeccc---ceecceeEEeeeeEecCCcc
Confidence 11 12333344 66666666666666666544
No 183
>PLN02694 serine O-acetyltransferase
Probab=98.56 E-value=2e-07 Score=93.66 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=47.1
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEEC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIG 485 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig 485 (524)
+.||+|++|.+. ..++||++|.||++|.|...+.+++.-.+ ......+++++ +.||.|+.| .++.||++|.||
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~~-~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~IG 240 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKA-CGDRHPKIGDG---VLIGAGATILGNVKIGEGAKIG 240 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcccc-cCCCccEECCC---eEECCeeEECCCCEECCCCEEC
Confidence 445555555421 13677777777777777666666552100 01123455555 677777777 577777777777
Q ss_pred CCcEEeC
Q 009817 486 KDVVIVN 492 (524)
Q Consensus 486 ~~~~i~~ 492 (524)
.+++|..
T Consensus 241 AgSVV~k 247 (294)
T PLN02694 241 AGSVVLI 247 (294)
T ss_pred CCCEECC
Confidence 7777775
No 184
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.56 E-value=1.9e-07 Score=98.15 Aligned_cols=54 Identities=15% Similarity=0.346 Sum_probs=31.5
Q ss_pred CccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 391 ~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.|+++|.|+ +.|.+|+|+++|.|+ +|.|++|+|+.+|.|+++++|+++++..+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~ 344 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD 344 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC
Confidence 3445555553 345556666666666 56666666666666666666666555544
No 185
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.54 E-value=1.7e-07 Score=100.70 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=48.6
Q ss_pred eEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 418 ~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.+.+|+||.+|+| ++|.|++|+++.+ |.||++|.|++|+|+++|+||+++.|.++
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~~ 378 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRRC 378 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEeeE
Confidence 45668899999999 6899988888888 89999999999999999999999998764
No 186
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.52 E-value=9.1e-07 Score=75.88 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=48.1
Q ss_pred ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCC
Q 009817 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPEL 501 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~ 501 (524)
.++||+++.|++++.|.+.+.++.+ +.||. .|.+|+|++++.|+.++.|.+.
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~~~~lg~s-------- 80 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQHDGFLGHS-------- 80 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecCcCEEeee--------
Confidence 3678888888888777653333332 66654 4678888888888888888654
Q ss_pred ceEEecCcEEEcCCCEeCCCccc
Q 009817 502 GFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 502 ~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+||.++.|++++.+
T Consensus 81 ---------iIg~~v~ig~~~~~ 94 (101)
T cd05635 81 ---------YLGSWCNLGAGTNN 94 (101)
T ss_pred ---------EECCCCEECCCcee
Confidence 89999999998863
No 187
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.52 E-value=6.8e-07 Score=83.16 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe-------------ceEEcCCcEECCCCEEeceEEeCCccccchhh
Q 009817 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDTVMLGADYYQTESE 453 (524)
Q Consensus 388 ~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~-------------~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~ 453 (524)
...+.+.|++.|.+ .+.++.||++|.|+ ++.|. .++||+++.|++++.|.++.+..+
T Consensus 25 g~~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~-------- 95 (161)
T cd03359 25 NGKTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY-------- 95 (161)
T ss_pred CCceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC--------
Confidence 33444444444432 11235666666666 45554 357999999999999988777776
Q ss_pred HHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 454 IASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 454 ~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.| .+|+|++++.|++++.+..+
T Consensus 96 -----------v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 96 -----------VHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred -----------cEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 788888877 46777777777777777665
No 188
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.49 E-value=4e-07 Score=97.23 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=58.5
Q ss_pred CCCccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEe
Q 009817 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (524)
Q Consensus 389 ~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~I 467 (524)
..+.+++++.|++++|.+|+|+++|.|+ ++.|++|+|+++|+|+++|+|.+++++.+ +.|
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~-------------------~~i 374 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN-------------------VVV 374 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC-------------------CEE
Confidence 3467788888887889999999999998 79999999999999999999999888877 677
Q ss_pred CCCcEEee
Q 009817 468 GRNTKIRN 475 (524)
Q Consensus 468 g~~~~I~~ 475 (524)
|++++|.+
T Consensus 375 ~~~~~i~~ 382 (407)
T PRK00844 375 PPGATIGV 382 (407)
T ss_pred CCCCEECC
Confidence 77766644
No 189
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.48 E-value=3.7e-07 Score=98.16 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=56.1
Q ss_pred EECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECC-------
Q 009817 408 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------- 480 (524)
Q Consensus 408 iIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~------- 480 (524)
.+.+.+.+.++.+.+|+||++|+| +++.|++|+|+++ +.||+++.|.+|+|+.
T Consensus 294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~ 353 (429)
T PRK02862 294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESS 353 (429)
T ss_pred CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCcccccc
Confidence 344455555677778999999999 8999999999988 9999999999999965
Q ss_pred ------------CCEECCCcEEeCC
Q 009817 481 ------------NVKIGKDVVIVNK 493 (524)
Q Consensus 481 ------------~~~Ig~~~~i~~~ 493 (524)
++.||++|.|.++
T Consensus 354 ~~~~~~~~~~~~~~~Ig~~~~i~~~ 378 (429)
T PRK02862 354 EEREELRKEGKPPLGIGEGTTIKRA 378 (429)
T ss_pred cccccccccCCcccEECCCCEEEEE
Confidence 7999999999886
No 190
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.47 E-value=8.8e-07 Score=84.26 Aligned_cols=68 Identities=21% Similarity=0.404 Sum_probs=32.1
Q ss_pred eEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCE
Q 009817 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (524)
Q Consensus 407 siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~ 483 (524)
+.||++|.|+ ++.|. ++.||.+++|+.++.|.+.+..++. +.||.++.|. ++.|++++.
T Consensus 118 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~ig~~~~v~~~~~i~~~~~ 179 (201)
T TIGR03570 118 VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEG------------------VFIGAGATIIQGVTIGAGAI 179 (201)
T ss_pred CEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCC------------------CEECCCCEEeCCCEECCCCE
Confidence 5555555554 34332 3455555555555444432222221 4555555553 455555555
Q ss_pred ECCCcEEeC
Q 009817 484 IGKDVVIVN 492 (524)
Q Consensus 484 Ig~~~~i~~ 492 (524)
||.++++.+
T Consensus 180 i~~~~~v~~ 188 (201)
T TIGR03570 180 VGAGAVVTK 188 (201)
T ss_pred ECCCCEECC
Confidence 555555543
No 191
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.45 E-value=1.5e-06 Score=87.22 Aligned_cols=81 Identities=25% Similarity=0.426 Sum_probs=43.0
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~I 484 (524)
.+.||+|++|.+. ...+||.+|+||++|.|...+.+++..... ......++++ +.||.|+.| .++.||+||.|
T Consensus 147 ~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~~~-~~~~p~IGd~---V~IGaga~Ilggv~IG~~a~I 220 (273)
T PRK11132 147 AAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGKTS-GDRHPKIREG---VMIGAGAKILGNIEVGRGAKI 220 (273)
T ss_pred cceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcccC-CCcCCEECCC---cEEcCCCEEcCCCEECCCCEE
Confidence 4566666666631 124677777777777765544444311000 0112344555 566666665 35666666666
Q ss_pred CCCcEEeC
Q 009817 485 GKDVVIVN 492 (524)
Q Consensus 485 g~~~~i~~ 492 (524)
|.++++..
T Consensus 221 GAgSvV~~ 228 (273)
T PRK11132 221 GAGSVVLQ 228 (273)
T ss_pred CCCCEECc
Confidence 66666654
No 192
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.44 E-value=1.5e-06 Score=83.88 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=62.3
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
+...+.|.||+++.-. .++.||++|+|+ +|.+. ++.||++|.|+++|.|... +..+ +......-....
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~----~h~~--~~~~r~~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT----GHPV--HHELRKNGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC----CCCC--Chhhcccccccc
Confidence 4456667777776310 256677777777 55552 3688898899888888632 1101 000000000012
Q ss_pred cceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
-|+.||++++|. +|+|.++++||++++|..++
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgags 162 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGS 162 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCC
Confidence 368899999995 78888888888888888775
No 193
>PRK10502 putative acyl transferase; Provisional
Probab=98.42 E-value=1.3e-06 Score=83.08 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
+...+.+.+++.|..- .+..||++|.|+ ++.+. .++||++|.|++++.|.... .+ +.. ....+. .
T Consensus 54 iG~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~---h~-~~~--~~~~~~---~ 122 (182)
T PRK10502 54 IGKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGS---HD-YSD--PHFDLN---T 122 (182)
T ss_pred cCCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCC---CC-CcC--CCcccc---c
Confidence 3344445555544210 134555555555 34332 46888888888887775321 11 100 000111 1
Q ss_pred cceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
-|+.||++++|. +|+|.++++||++++|....
T Consensus 123 ~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~s 155 (182)
T PRK10502 123 APIVIGEGCWLAADVFVAPGVTIGSGAVVGARS 155 (182)
T ss_pred CCEEEcCCcEEcCCCEEcCCCEECCCCEECCCC
Confidence 247888888884 78888888888888877653
No 194
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.42 E-value=1.9e-06 Score=82.51 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=48.2
Q ss_pred ceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEE--------eCCccccchhhHHhhhcCCccceEeCCCcEE
Q 009817 406 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVM--------LGADYYQTESEIASLLAEGKVPIGVGRNTKI 473 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i--------~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I 473 (524)
...||++|.|+ ++.+. .+.||++|.|+++|.|.+... +.+..+.. +... + ..-|+.||++++|
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~--~~~~-~--~~~~v~Ig~~~~i 139 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP--DMRT-L--ESSAVVIGQRVWI 139 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh--hhcc-c--ccCCeEEcCCcEE
Confidence 36777777777 45443 578888888888888865321 11100000 0000 0 0124777777777
Q ss_pred e-eeEECCCCEECCCcEEeCCC
Q 009817 474 R-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 474 ~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
. +++|.++++||++++|..++
T Consensus 140 g~~~~i~~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 140 GENVTILPGVSIGNGCIVGANS 161 (192)
T ss_pred CCCCEEcCCCEECCCCEECCCC
Confidence 3 66677777777777776653
No 195
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.42 E-value=2.8e-06 Score=77.07 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=48.7
Q ss_pred CCCCCccCCCeEEcC-eeee-ceEECCCCEECceEE-eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCcc
Q 009817 387 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (524)
Q Consensus 387 i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~~~~i-~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~ 463 (524)
+..++.+++++.|.. +.|. ++.||++|.|.. .+ .+++||.+|.||+++.|. +.+-+. ......++++
T Consensus 10 V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~-- 79 (147)
T cd04649 10 VRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKR-- 79 (147)
T ss_pred ECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCC------cccCEEECCC--
Confidence 444455555555532 3332 466666666641 22 236777777777777776 222111 0011223333
Q ss_pred ceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.| +..||+|+.||+++++...
T Consensus 80 -~~IG~ga~I-gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 80 -CLLGANSGI-GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred -CEECCCCEE-eEEECCCCEECCCCEEeCC
Confidence 555555555 5566666666666666655
No 196
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.40 E-value=1.3e-06 Score=81.46 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=16.4
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+++.||.++.|..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 5556555553 455666666666666554
No 197
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.40 E-value=3.2e-06 Score=85.23 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=8.7
Q ss_pred eEEcCCcEECCCCEE
Q 009817 423 SIVGERSRLDYGVEL 437 (524)
Q Consensus 423 siIg~~~~Ig~~~~I 437 (524)
++||.+|.||.+|.|
T Consensus 225 avIGhds~IG~gasI 239 (341)
T TIGR03536 225 VMVGKGSDLGGGCST 239 (341)
T ss_pred CEECCCCEECCCCEE
Confidence 455555555555555
No 198
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.40 E-value=1.6e-06 Score=69.40 Aligned_cols=69 Identities=25% Similarity=0.420 Sum_probs=40.2
Q ss_pred EECCCCEEC-ceEEec-eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 408 IISHGCFLR-ECTVEH-SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 408 iIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
.|+++|.|+ ++.|.. ++||+++.|++++.|.+...+. ...|+.||+++.|. +|+|..+++|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~----------------~~~~~~ig~~~~v~~~~~i~~~~~i 65 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN----------------EKNPTIIGDNVEIGANAVIHGGVKI 65 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC----------------ccCCcEECCCcEECCCCEEeCCCEE
Confidence 455566665 344443 8888888888888887654321 11225566655553 3555555555
Q ss_pred CCCcEEeC
Q 009817 485 GKDVVIVN 492 (524)
Q Consensus 485 g~~~~i~~ 492 (524)
|+++.|..
T Consensus 66 g~~~~i~~ 73 (78)
T cd00208 66 GDNAVIGA 73 (78)
T ss_pred CCCCEECc
Confidence 55555543
No 199
>PLN02357 serine acetyltransferase
Probab=98.38 E-value=1.1e-06 Score=90.68 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=40.9
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++||++++||++|.|...+.+++.-.+. .....+++++ +.||.|+.| .++.||+++.||.+++|...
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg~g~~~-g~~~piIGd~---V~IGagA~IlggV~IGdga~IGAgSVV~~d 314 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGGTGKQS-GDRHPKIGDG---VLIGAGTCILGNITIGEGAKIGAGSVVLKD 314 (360)
T ss_pred eEECCCCEECCCCEEeCCceecCccccC-CccCceeCCC---eEECCceEEECCeEECCCCEECCCCEECcc
Confidence 4555555555555554444444321111 1123566667 888888777 57888888888888888864
No 200
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.38 E-value=2.5e-06 Score=79.94 Aligned_cols=99 Identities=23% Similarity=0.262 Sum_probs=53.0
Q ss_pred CCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCcc
Q 009817 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (524)
Q Consensus 388 ~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~ 463 (524)
.....+.+++++.-. .++.||++|+|+ ++.+. +..||+++.|+++|.|..+. ..+ ...+...-. .-.-
T Consensus 46 ~~~~~i~~~~~~~~~--~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~----h~~-~~~~~~~~~-~~~~ 117 (169)
T cd03357 46 GENVYIEPPFHCDYG--YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG----HPL-DPEERNRGL-EYAK 117 (169)
T ss_pred CCCCEEcCCEEEEeC--CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC----CCC-ChhHccccc-eecC
Confidence 334555566554210 134566666665 34332 46888888888888885431 001 011110000 0011
Q ss_pred ceEeCCCcEE-eeeEECCCCEECCCcEEeCCC
Q 009817 464 PIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 464 ~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
|+.||++++| .+|+|.++++||++++|..++
T Consensus 118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~Vgaga 149 (169)
T cd03357 118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGS 149 (169)
T ss_pred CcEeCCCEEECCCCEEeCCCEECCCCEECCCC
Confidence 4777777777 467777777777777776663
No 201
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.38 E-value=1.7e-06 Score=74.22 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEece
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDT 440 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s 440 (524)
+.|+++|.|.+. ..+.||++|.|+++|.|.++
T Consensus 8 ~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 8 VYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred cEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence 444444444321 24788888888888888765
No 202
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.36 E-value=1.4e-06 Score=91.10 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=12.4
Q ss_pred EEeceEEcCCcEECCC-CEEeceEEeCC
Q 009817 419 TVEHSIVGERSRLDYG-VELKDTVMLGA 445 (524)
Q Consensus 419 ~i~~siIg~~~~Ig~~-~~I~~s~i~~~ 445 (524)
.|.+|+|+++++|+.+ ++|.++++..+
T Consensus 301 ~i~~s~i~~~~~i~~~~~~~~~~ii~~~ 328 (353)
T TIGR01208 301 EVEHSIVLDESVIEGVQARIVDSVIGKK 328 (353)
T ss_pred EEEeeEEcCCCEEcCCcceeecCEEcCC
Confidence 3344555555555544 24444444333
No 203
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.36 E-value=2.8e-06 Score=90.72 Aligned_cols=236 Identities=17% Similarity=0.192 Sum_probs=133.8
Q ss_pred CeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCCC---------cEEEEEecCCcccccc
Q 009817 215 ENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKA 284 (524)
Q Consensus 215 e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~g---------~V~~~~EKp~~~~~~~ 284 (524)
..++|.++|.++ ..+- ..++ + .+++++++..+.+.+-+++.|+...|+++ .+..|..||...+..
T Consensus 54 pGv~V~s~D~vl~~~~~-~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~- 128 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDD-PLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR- 128 (414)
T ss_pred cceEEEecccccccCcc-ccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH-
Confidence 468999999444 3331 1221 1 23678888888877667899999999998 899999999877542
Q ss_pred cccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC----------------CCchhhhhHHhhhhcCceEE
Q 009817 285 MQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT----------------SNDFGSEIIPAAIMEHDVQA 348 (524)
Q Consensus 285 ~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~----------------~~d~~~dii~~li~~~~V~~ 348 (524)
....+. .......++|++.|+.+..+.|+...... ..+...|++..+..+-...-
T Consensus 129 --~~~av~-------~~~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~~~t~e~ 199 (414)
T PF07959_consen 129 --ASGAVL-------PDGNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGPDATEEY 199 (414)
T ss_pred --hCCccc-------CCCcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcCCccccC
Confidence 111111 11234568999999998777766432111 12344566665554321110
Q ss_pred EEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC-CeEEc-C--eeeeceEECCCCE-ECceEEece
Q 009817 349 YIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP-PTKID-N--CRIKDAIISHGCF-LRECTVEHS 423 (524)
Q Consensus 349 y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p-~~~i~-~--~~i~~siIg~g~~-I~~~~i~~s 423 (524)
.... ..+.+.-..+..|.+.+-....... + .....| +.+++ + ...-.....+... +....+.++
T Consensus 200 ~~~~--~~~~~~~~~l~~aR~~l~~~Lr~~~-------l--~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~~~~~ 268 (414)
T PF07959_consen 200 PENT--SNVLKEESELREARQKLWKLLRGTP-------L--NVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRKFSHS 268 (414)
T ss_pred cccc--CCCcchhHHHHHHHHHHHHHhhhcc-------c--cccccCCceEEEecCCHHHHHhhccCcccccceeeeecc
Confidence 1111 1223333445555544432211100 0 001111 12221 1 0111122222221 333344455
Q ss_pred EEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 009817 424 IVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 424 iIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.....+.+..++.|.+|++.+. +.||++++|.+|.|+.+++||.+|+|.+.+
T Consensus 269 ~~~~~~~~~~~~~VinSil~~~-------------------~~vg~~svIe~s~l~~~~~IG~~cIisGv~ 320 (414)
T PF07959_consen 269 PATTPSDSEASSCVINSILEGG-------------------VSVGPGSVIEHSHLGGPWSIGSNCIISGVD 320 (414)
T ss_pred ccccccccCCCeeEEEeEecCC-------------------ceECCCCEEEeeecCCCCEECCCCEEECCc
Confidence 5555667778888888888887 888899999999999999999999999886
No 204
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.35 E-value=2.5e-06 Score=82.44 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCCCCCCCccCCCeEEcC-eeeec-eEECCCCEECceEEeceEEcCCcEECCCCEE-eceEEeCCccccchhhHHhhhcC
Q 009817 384 KTPFYTSPRFLPPTKIDN-CRIKD-AIISHGCFLRECTVEHSIVGERSRLDYGVEL-KDTVMLGADYYQTESEIASLLAE 460 (524)
Q Consensus 384 ~~~i~~~~~i~p~~~i~~-~~i~~-siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I-~~s~i~~~~~~~~~~~~~~~~~~ 460 (524)
.+.|++++.++|+++|++ ++|.+ ++||+++.|++ +++|+++++|.-.++| +++.+++...++...+-...-+|
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~----~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge 78 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGD----GTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGE 78 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEECC----CcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCC
Confidence 456888888888888864 33333 44444444442 2444444444444444 34555555555555554444444
Q ss_pred CccceEeCCCcEEe
Q 009817 461 GKVPIGVGRNTKIR 474 (524)
Q Consensus 461 g~~~~~Ig~~~~I~ 474 (524)
- .-+.||+|+.|+
T Consensus 79 ~-T~l~IG~~n~IR 91 (260)
T COG1043 79 P-TRLIIGDNNTIR 91 (260)
T ss_pred c-eEEEECCCCeEe
Confidence 2 225677777776
No 205
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.34 E-value=4.4e-06 Score=83.88 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=14.0
Q ss_pred CccceEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 461 GKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 461 g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
++.|+.||++|.|. +|.| +..||++|+|..
T Consensus 222 ~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGA 252 (319)
T TIGR03535 222 GKEVISIGERCLLGANSGL--GISLGDDCVVEA 252 (319)
T ss_pred CcccEEECCCcEECCCCEE--CeEECCCCEECC
Confidence 34555666555554 4444 334444444433
No 206
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.34 E-value=3.5e-06 Score=80.08 Aligned_cols=97 Identities=21% Similarity=0.320 Sum_probs=56.0
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEEC-ceEEec---eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccce
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 465 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~---siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~ 465 (524)
++.+.||.++.-. .+..||++++|+ +|.+.+ ..||++|.|+++|.|.... .. ....+...- .+-.-|+
T Consensus 59 ~~~i~~~~~~~~g--~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~-h~----~~~~~~~~~-~~~~~~v 130 (183)
T PRK10092 59 EAYIEPTFRCDYG--YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTAT-HP----LDPVARNSG-AELGKPV 130 (183)
T ss_pred CEEEeCCEEEeec--CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCC-CC----CChHHcccc-ceecCCe
Confidence 4556666654210 256666776666 444432 3678888888777775321 00 011111100 0001258
Q ss_pred EeCCCcEE-eeeEECCCCEECCCcEEeCCC
Q 009817 466 GVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 466 ~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.||++++| .+|+|.++++||++++|..++
T Consensus 131 ~IGd~v~IG~~a~I~~gv~IG~~~vIgags 160 (183)
T PRK10092 131 TIGNNVWIGGRAVINPGVTIGDNVVVASGA 160 (183)
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCC
Confidence 88888888 578888888888888888774
No 207
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.34 E-value=3e-06 Score=67.76 Aligned_cols=68 Identities=28% Similarity=0.495 Sum_probs=50.3
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee---------eEECCCCEECCCcEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.|++++.|.+.+.++.+ +.|++++.|.+ +.|++++.||.+++|...
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~ 62 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG 62 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCC
Confidence 467888888888888764444433 78888888875 677888888887777654
Q ss_pred CCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 494 DEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 494 ~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.|++++.|+++++|
T Consensus 63 ----------------~~ig~~~~i~~~s~v 77 (78)
T cd00208 63 ----------------VKIGDNAVIGAGAVV 77 (78)
T ss_pred ----------------CEECCCCEECcCcEe
Confidence 488888888888765
No 208
>PRK10502 putative acyl transferase; Provisional
Probab=98.32 E-value=4.3e-06 Score=79.41 Aligned_cols=17 Identities=18% Similarity=0.183 Sum_probs=10.8
Q ss_pred ceEEcCCcEECCCCEEe
Q 009817 422 HSIVGERSRLDYGVELK 438 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~ 438 (524)
+..||+++.|++++.|.
T Consensus 71 ~~~IG~~~~Ig~~~~I~ 87 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLY 87 (182)
T ss_pred eEEECCCeEECCCceec
Confidence 35666666666666664
No 209
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.31 E-value=3.9e-06 Score=81.02 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=10.3
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
++||++|.||.+++|..+
T Consensus 132 i~IGd~v~IG~~~~I~~g 149 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPG 149 (203)
T ss_pred eEECCCcEECCCCEEcCC
Confidence 455666666666655544
No 210
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.30 E-value=2e-06 Score=84.65 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=38.6
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~ 483 (524)
++.++++|.|.. +..+|.+++||+||+|. ++.|++- +-+-+..|+.||+||.|. |+.+..++.
T Consensus 138 gA~~~~gtMVd~----~as~G~~a~VGkn~higgGa~I~GV-----------Lep~~a~Pv~IgdncliGAns~~veGV~ 202 (271)
T COG2171 138 GAGTGEGTMVDG----RASVGSCAQVGKNSHIGGGASIGGV-----------LEPLQANPVIIGDNCLIGANSEVVEGVI 202 (271)
T ss_pred CcccCcceEEee----eeeeeccEEECCCcccCCcceEeEE-----------ecCCCCCCeEECCccEeccccceEeeeE
Confidence 466666666662 23445555555555553 2223321 112234678888888886 555555555
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
+|++|+|..+
T Consensus 203 vGdg~VV~aG 212 (271)
T COG2171 203 VGDGCVVAAG 212 (271)
T ss_pred eCCCcEEecc
Confidence 5555555544
No 211
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.25 E-value=5.5e-06 Score=70.70 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=11.5
Q ss_pred eEeCCCcEEee-eEECCCCEECCCcEEe
Q 009817 465 IGVGRNTKIRN-CIIDKNVKIGKDVVIV 491 (524)
Q Consensus 465 ~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~ 491 (524)
+.|+.++.+.. +.|++++.|+.++.|.
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 34444444432 4444444444444444
No 212
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.25 E-value=2e-06 Score=84.59 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEECc-eEE-eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEe
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~~-~~i-~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~I 467 (524)
.+|+.|++.+.. .+.|++|++|.. +.| -++.++.++.|+-++.+..+...|.. +.|
T Consensus 108 g~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~hi 165 (271)
T COG2171 108 GVRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SHI 165 (271)
T ss_pred ceeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------ccc
Confidence 366666666542 477777777773 322 23444555555544444444433332 555
Q ss_pred CCCcEEe---------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 468 GRNTKIR---------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 468 g~~~~I~---------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
|-++.|. -++|++||.||+++.+.-+ +.+++| ++|..+++|..+|.
T Consensus 166 ggGa~I~GVLep~~a~Pv~IgdncliGAns~~veG---------V~vGdg-~VV~aGv~I~~~tk 220 (271)
T COG2171 166 GGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEG---------VIVGDG-CVVAAGVFITQDTK 220 (271)
T ss_pred CCcceEeEEecCCCCCCeEECCccEeccccceEee---------eEeCCC-cEEecceEEeCCcc
Confidence 5555554 4788999999999866643 444444 44555555555443
No 213
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.25 E-value=3.5e-06 Score=90.78 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=63.1
Q ss_pred CCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECC----------
Q 009817 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK---------- 480 (524)
Q Consensus 411 ~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~---------- 480 (524)
+++.+.++.|.+|+|+++|+|+ +|.|++|+|+++ +.||++|.|.+|+|..
T Consensus 304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~ 363 (436)
T PLN02241 304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEI 363 (436)
T ss_pred CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCcccccccc
Confidence 4444455666679999999999 999999988888 8999999999988844
Q ss_pred ------C---CEECCCcEEeCCC--CCCCCCCceEEec-----CcEEEcCCCEeCCCc
Q 009817 481 ------N---VKIGKDVVIVNKD--EADRPELGFYIRS-----GITIIMEKATIEDGM 522 (524)
Q Consensus 481 ------~---~~Ig~~~~i~~~~--e~~~~~~~~~i~~-----g~~vv~~~~~i~~gt 522 (524)
+ ++||++++|.+.- +...+.++..|.. +.+++|+++.|++|+
T Consensus 364 ~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
T PLN02241 364 ASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI 421 (436)
T ss_pred ccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCE
Confidence 2 3799888887652 2333444444431 122445555555553
No 214
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.18 E-value=8.5e-06 Score=76.41 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=19.5
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.| .++.||+||.||.++++...
T Consensus 125 ~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~ 154 (169)
T cd03357 125 VWIGGGVIILPGVTIGDNSVIGAGSVVTKD 154 (169)
T ss_pred EEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 667777766 36677777777777776653
No 215
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.18 E-value=9.5e-06 Score=70.90 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=18.5
Q ss_pred eEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCC
Q 009817 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 407 siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
++|+++|.|+ ++.|. ++.|+.++.||++|.|.+...+.+
T Consensus 11 ~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~ 51 (119)
T cd03358 11 VFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTN 51 (119)
T ss_pred cEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEec
Confidence 4455555555 34442 344445555555555544444433
No 216
>PLN02694 serine O-acetyltransferase
Probab=98.14 E-value=9.8e-06 Score=81.63 Aligned_cols=14 Identities=7% Similarity=0.012 Sum_probs=8.1
Q ss_pred CCCCCccCCCeEEc
Q 009817 387 FYTSPRFLPPTKID 400 (524)
Q Consensus 387 i~~~~~i~p~~~i~ 400 (524)
|+..++|+++++|+
T Consensus 163 I~p~A~IG~gv~Id 176 (294)
T PLN02694 163 IHPAAKIGKGILFD 176 (294)
T ss_pred eCCcceecCCEEEe
Confidence 45555666666664
No 217
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.13 E-value=0.00021 Score=72.91 Aligned_cols=209 Identities=12% Similarity=0.209 Sum_probs=125.6
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc----CCC-eEEEEeccC-chhHHHHHHHhhhcC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~-~~~l~~hl~~~y~~~ 166 (524)
+++.+|+||||.||||+ ..-||.|+||....+++|+.++++... |.+ -.+|.|.+. ++...+++.+ |...
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 46789999999999995 468999999964449999999988652 322 567777765 4567777753 3111
Q ss_pred CcccCCCeEEEEcccc--------------CCCCCCCCc-ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecccC
Q 009817 167 GTNFGDGFVEVLAATQ--------------TPGESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMD 229 (524)
Q Consensus 167 ~~~~~~~~V~vl~~~q--------------~~~e~~~~~-~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~~d 229 (524)
...|.++.... ..+.....| +-|.++...... ..+++....+.+++.+.+.|.|...-
T Consensus 78 -----~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~ 152 (300)
T cd00897 78 -----NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATV 152 (300)
T ss_pred -----ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccC
Confidence 11122111000 000011122 246666544332 23444445688999999999976532
Q ss_pred HHHHHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceee
Q 009817 230 YMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (524)
Q Consensus 230 l~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~ 308 (524)
=-.++-.|.++++++++=+.+...+. +.-|. +..|..-+|.++.|-|.....+ .. +. ..-.+.++
T Consensus 153 Dp~~lg~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~~-----------~~~~~~nt 218 (300)
T cd00897 153 DLRILNHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-SI-----------KKFKIFNT 218 (300)
T ss_pred CHHHHHHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-Cc-----------ccceEEEE
Confidence 24577888889999887555443321 23454 3445444577777776543210 00 00 01246789
Q ss_pred eEEEEeHHHHHHHHHh
Q 009817 309 GVYVFKKDVLFKLLRW 324 (524)
Q Consensus 309 GIYvf~~~vL~~ll~~ 324 (524)
+.+.|+-+.|.++++.
T Consensus 219 ~n~~~~l~~L~~~~~~ 234 (300)
T cd00897 219 NNLWVNLKAVKRVVEE 234 (300)
T ss_pred eEEEEEHHHHHHHHHh
Confidence 9999999999877654
No 218
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.11 E-value=3.1e-05 Score=70.29 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=12.9
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVEL 437 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I 437 (524)
.+.||+|++|.. +++|..+++||+++.|
T Consensus 13 ~a~IG~GtvI~~----gavV~~~a~IG~~~iI 40 (147)
T cd04649 13 GAYLAEGTTVMH----EGFVNFNAGTLGNCMV 40 (147)
T ss_pred CCEECCCcEECC----CCEEccCCEECCCeEE
Confidence 355555555552 1344444444444444
No 219
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.1e-05 Score=84.78 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
..+...+.+++++.|+. +.|. +++||+||.|+ ++.|.+|+|.++|+|++++.|.+|++..+
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~ 319 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN 319 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC
Confidence 44556666677777753 5554 59999999999 68999999999999999999999999999
No 220
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.11 E-value=3e-05 Score=89.58 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=141.5
Q ss_pred eEEEEcCceecccC--HHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCC--CcEEEEEecCCccccccccccccc
Q 009817 216 NVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSL 291 (524)
Q Consensus 216 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~--g~V~~~~EKp~~~~~~~~~v~t~~ 291 (524)
.+||.+||.+..++ +.+ -.++|++......+.+-.++.|+...|.+ +++..+..||...+..++.-
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~---- 223 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSK---- 223 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhc----
Confidence 79999999977654 222 13467777777666666789999999987 78999999999876543321
Q ss_pred ccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC------CCchhhhhHHhhh----------hcCceEEEEec-Ce
Q 009817 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT------SNDFGSEIIPAAI----------MEHDVQAYIFR-DY 354 (524)
Q Consensus 292 ~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~------~~d~~~dii~~li----------~~~~V~~y~~~-~~ 354 (524)
....+.++|+|+|+.+....|++..+.. .-|+.+|++..+- +..++...... +.
T Consensus 224 ---------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 224 ---------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ---------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 1346789999999999887777654321 2255566655432 22445555554 56
Q ss_pred EeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEECc--eEEeceEEcCCcEEC
Q 009817 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE--CTVEHSIVGERSRLD 432 (524)
Q Consensus 355 w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~~--~~i~~siIg~~~~Ig 432 (524)
++.+||-..|+.....+-+... + ...+.....-..|+ +-|.||+++.+|.+++ +.|++|.|+.+++||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~-----~-~~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVT-----D-QRRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhh-----h-hhhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 9999999999875554433210 0 00111111100111 2345899999999994 457999999999999
Q ss_pred CCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEEC
Q 009817 433 YGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479 (524)
Q Consensus 433 ~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~ 479 (524)
+++.|.+.-..+-+ ..|.+++.|+-.=++
T Consensus 365 ~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl~ 393 (974)
T PRK13412 365 SRSIITGVPENSWN------------------LDLPEGVCIDVVPVG 393 (974)
T ss_pred CCcEEecccccccc------------------eecCCCcEEEEEEcC
Confidence 99999776433322 567777777654443
No 221
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.10 E-value=1.3e-05 Score=80.57 Aligned_cols=11 Identities=0% Similarity=-0.025 Sum_probs=4.6
Q ss_pred CCCccCCCeEE
Q 009817 389 TSPRFLPPTKI 399 (524)
Q Consensus 389 ~~~~i~p~~~i 399 (524)
+.+.|++++.|
T Consensus 146 ~~a~IG~g~~I 156 (273)
T PRK11132 146 PAAKIGRGIML 156 (273)
T ss_pred CcceECCCeEE
Confidence 33444444444
No 222
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.10 E-value=2.7e-05 Score=67.25 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=44.3
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
++.|+++|.|.. .....||++|.|++++.|.... ..+.. ....+.. -|+.||++|+|. +|+|..+++|
T Consensus 9 ~~~I~~~~~i~~--~~~i~IG~~~~I~~~~~I~~~~----h~~~~--~~~~~~~---~~v~Ig~~~~ig~~~~i~~g~~I 77 (107)
T cd05825 9 NSWIGEGVWIYN--LAPVTIGSDACISQGAYLCTGS----HDYRS--PAFPLIT---APIVIGDGAWVAAEAFVGPGVTI 77 (107)
T ss_pred CCEECCCCEEee--CCceEECCCCEECCCeEeecCC----CCCCc--Cccceec---CCEEECCCCEECCCCEECCCCEE
Confidence 345555555541 1246788888888887775320 00100 0001111 247788888884 6777777777
Q ss_pred CCCcEEeCCC
Q 009817 485 GKDVVIVNKD 494 (524)
Q Consensus 485 g~~~~i~~~~ 494 (524)
|+++.|..+.
T Consensus 78 g~~~~i~~gs 87 (107)
T cd05825 78 GEGAVVGARS 87 (107)
T ss_pred CCCCEECCCC
Confidence 7777777764
No 223
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.10 E-value=1.5e-05 Score=74.31 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=17.1
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
..||++++|. +|.|..+++||+++.|...
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~ 143 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGNIEVGENAKIGAN 143 (162)
T ss_pred CEECCCcEEcCCCEEECCcEECCCCEECCC
Confidence 4566666663 5555556666666666655
No 224
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.09 E-value=4.2e-05 Score=74.05 Aligned_cols=177 Identities=23% Similarity=0.248 Sum_probs=103.7
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
.|||+|-|..+|| .-|.|.+++|+ |||+|+++.+.++ .+++|+|.|.. +.+.+.+ +.| + ..
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~-~~~-------g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIA-EEY-------G-AK 62 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHH-HHT-------T-SE
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHH-HHc-------C-Ce
Confidence 3899999999999 56999999999 9999999999998 57999888854 4555444 332 3 22
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCc-EEEEEEEc
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDAD-ITISCAAV 251 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad-~tl~~~~~ 251 (524)
|.+...... .++.... .+...+.. ...+.++.+.||.-+ + ..+.++++.+.+..++ +.-...+.
T Consensus 63 v~~~~~~~~---------~~~~r~~-~~~~~~~~---~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDRFI-EAIKHFLA---DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--TTSS---------SHHHHHH-HHHHHHTC---STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcChhhc---------CCcccHH-HHHHHhhh---hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 433332221 2343333 33332221 123478888999844 4 3579999999988876 32222232
Q ss_pred CC----CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHH
Q 009817 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD 316 (524)
Q Consensus 252 ~~----~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~ 316 (524)
.. .+. .--....++++....+.+.+.....+.. ... ...++...++|.++..
T Consensus 130 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 130 GSSVEIFNF-NPLKVLFDDDGLELYFSEHVIPYIRRNP-----------EEF-KYFYIRQVGIYAFRKE 185 (217)
T ss_dssp CSHHHHTST-TSTEEEECTTSBEEEEESSESSECHHHH-----------CSS-SSTEEEEEEEEEEEHH
T ss_pred cchhhcccc-cceEEEeccccchhhcccCCCccccccc-----------ccc-cccccccccccccccc
Confidence 21 111 1122344555566666665543321100 000 0125678999999997
No 225
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.08 E-value=2.1e-05 Score=79.46 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=9.5
Q ss_pred EcCCcEECCCCEEeceE
Q 009817 425 VGERSRLDYGVELKDTV 441 (524)
Q Consensus 425 Ig~~~~Ig~~~~I~~s~ 441 (524)
|-.++.||++|.|.+.+
T Consensus 221 InsGavIGhds~IG~ga 237 (341)
T TIGR03536 221 ISAGVMVGKGSDLGGGC 237 (341)
T ss_pred cccCCEECCCCEECCCC
Confidence 45556666666665433
No 226
>PRK10191 putative acyl transferase; Provisional
Probab=98.08 E-value=1.6e-05 Score=72.74 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=18.4
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|. ++.||+++.||.++++...
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 5666666664 4666666666666666654
No 227
>PLN02357 serine acetyltransferase
Probab=98.08 E-value=1.8e-05 Score=81.81 Aligned_cols=91 Identities=11% Similarity=0.256 Sum_probs=52.1
Q ss_pred CCCCCCccCCCeEEcC---eeee-ceEECCCCEEC-ceEE---------eceEEcCCcEECCCCEEeceEEeCCccccch
Q 009817 386 PFYTSPRFLPPTKIDN---CRIK-DAIISHGCFLR-ECTV---------EHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (524)
Q Consensus 386 ~i~~~~~i~p~~~i~~---~~i~-~siIg~g~~I~-~~~i---------~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~ 451 (524)
.|++.++|+.+++|+. +.|. +++||++|.|. ++++ .+++||++|.||.|+.|-+.+.+++.
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdg----- 302 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEG----- 302 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCC-----
Confidence 3555566666666642 3332 35555555554 3333 24677777777777777554444432
Q ss_pred hhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 009817 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 452 ~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||.++.|...+-...+.+|.-+.+.+..
T Consensus 303 -------------a~IGAgSVV~~dVP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 303 -------------AKIGAGSVVLKDVPPRTTAVGNPARLIGGK 332 (360)
T ss_pred -------------CEECCCCEECcccCCCcEEECCCeEEEccC
Confidence 677777777665555555566666666543
No 228
>PLN02739 serine acetyltransferase
Probab=98.07 E-value=1.2e-05 Score=82.73 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=21.7
Q ss_pred hhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 009817 457 LLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~ 492 (524)
.+|++ |.||.|+.| .++.||+|+.||.|++|..
T Consensus 259 ~IGd~---V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 259 KIGDG---ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred EECCC---CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 34444 666666666 4677777777777777764
No 229
>PLN02830 UDP-sugar pyrophosphorylase
Probab=98.04 E-value=0.0039 Score=69.47 Aligned_cols=218 Identities=13% Similarity=0.153 Sum_probs=124.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc-----------CC-CeEEEEeccC-chhH
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------GI-NKIFVLTQFN-SASL 155 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s-----------Gi-~~I~Ivt~~~-~~~l 155 (524)
..++..|.||||.||||+ ..-||.++|++ |+ +++|..++.+... +. =-.+|.|.++ .+..
T Consensus 126 l~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 126 AGNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred hCcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 367889999999999996 45789999984 77 9999999987653 11 2467888865 4556
Q ss_pred HHHHHH-hhhcCCcccCCCeEEEEcccc------CCC----CC----CCC-cccCcHHHHHHHH--HHHHhhhcCCCCeE
Q 009817 156 NRHIAR-TYFGNGTNFGDGFVEVLAATQ------TPG----ES----GKN-WFQGTADAVRQFT--WVFEDAKNRNIENV 217 (524)
Q Consensus 156 ~~hl~~-~y~~~~~~~~~~~V~vl~~~q------~~~----e~----~~~-~~~Gta~al~~a~--~~i~~~~~~~~e~~ 217 (524)
.+++.+ .||+.. ...|.++.... ..+ +. .-. .+-|.++...... ..+++....+.+++
T Consensus 202 ~~~~~~n~~FGl~----~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi 277 (615)
T PLN02830 202 LKLLERNDYFGMD----PDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWV 277 (615)
T ss_pred HHHHHHCCccCCC----ccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEE
Confidence 667653 234321 11222221000 000 00 001 2246665443332 33555555788999
Q ss_pred EEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE--CCCCc----EEEEEecCCcccccccccccc
Q 009817 218 AILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDTS 290 (524)
Q Consensus 218 Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i--d~~g~----V~~~~EKp~~~~~~~~~v~t~ 290 (524)
.+.+.|... ....-.++-.+...+.++..-+.+... .+.-|++.. ..+|+ ++++.|.+..... .+....
T Consensus 278 ~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~--a~~p~g 353 (615)
T PLN02830 278 VFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRA--TGHPDG 353 (615)
T ss_pred EEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHh--ccCCCc
Confidence 999999833 333478888888899998877766543 234565543 23344 3355555432111 111000
Q ss_pred cccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 291 LLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 291 ~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
-+..... + +.+=.+++...++-+.+.++|+.
T Consensus 354 ~l~~~~~-~--s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 354 DVNDETG-Y--SPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccccccc-c--ccCCCCceeeEeeHHHHHHHHHh
Confidence 0000000 1 12224888888998888777764
No 230
>PLN02739 serine acetyltransferase
Probab=98.03 E-value=2.1e-05 Score=80.81 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||++++|. ++.|..|++||++++|..++
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGS 288 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGS 288 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCC
Confidence 5677777774 66666667777777776664
No 231
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.03 E-value=0.0002 Score=76.43 Aligned_cols=215 Identities=19% Similarity=0.314 Sum_probs=122.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHh----cCCC-eEEEEeccC-chhHHHHHHHhhhc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTYFG 165 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~----sGi~-~I~Ivt~~~-~~~l~~hl~~~y~~ 165 (524)
.+++..|+||||.||||+ ..-||.|+||.....++|..++++.. .|.+ -.+|.|.++ .++..+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 567889999999999996 46899999996544899988888765 2432 457777765 5678888865 865
Q ss_pred CCccc---CCCeEEEEccccC-CC-C------CCCCc-ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecccCHH
Q 009817 166 NGTNF---GDGFVEVLAATQT-PG-E------SGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (524)
Q Consensus 166 ~~~~~---~~~~V~vl~~~q~-~~-e------~~~~~-~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~~dl~ 231 (524)
..... .-+.+..+..+.. +- . +...| +-|.|+...... ..++++...+.+++.+.+.|.|...-=.
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 43221 0011111211100 00 0 01123 247776444332 2455555578899999999997654334
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCcceEE-EECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeE
Q 009817 232 DFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (524)
Q Consensus 232 ~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v-~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GI 310 (524)
.++-.+.++++++.+-+.+...+. ..-|.+ ..|..-++.++.+-|.... .+... .....+.++|-
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~-~~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHM-AEFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGH-HHHTS------------TTTSBEEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHH-Hhhhc------------cccceEEEece
Confidence 578888889999887777654322 234543 3433233444444443211 00000 00124568888
Q ss_pred EEEeHHHHHHHHHh
Q 009817 311 YVFKKDVLFKLLRW 324 (524)
Q Consensus 311 Yvf~~~vL~~ll~~ 324 (524)
-.|+-+.|.++++.
T Consensus 276 i~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 276 IWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred eeEEHHHHHHHHHh
Confidence 89999999888765
No 232
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.03 E-value=9.9e-06 Score=72.03 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=28.7
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTV 441 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~ 441 (524)
.+||.+||.|+ +.+-++.||..|.|++++.|+..+
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~ 73 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPM 73 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCch
Confidence 48899999998 466678888888888888887755
No 233
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.03 E-value=0.00015 Score=78.34 Aligned_cols=212 Identities=16% Similarity=0.245 Sum_probs=125.3
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc--------------CC-CeEEEEeccC-ch
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GI-NKIFVLTQFN-SA 153 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s--------------Gi-~~I~Ivt~~~-~~ 153 (524)
.++.+|+||||.||||+ ..-||.|++|+ ++ .|++...+++... +. =..+|.|.+. .+
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 67889999999999996 46899999885 77 9999999886431 11 1447788764 55
Q ss_pred hHHHHHHH-hhhcCCcccCCCeEEEEccccCC--CCCC----------CCcccCcHHHHHHHHH--HHHhhhcCCCCeEE
Q 009817 154 SLNRHIAR-TYFGNGTNFGDGFVEVLAATQTP--GESG----------KNWFQGTADAVRQFTW--VFEDAKNRNIENVA 218 (524)
Q Consensus 154 ~l~~hl~~-~y~~~~~~~~~~~V~vl~~~q~~--~e~~----------~~~~~Gta~al~~a~~--~i~~~~~~~~e~~L 218 (524)
...+++.+ .||+-. ...|.++.....| ...+ .-.+-|.++....... .+++....+.+++.
T Consensus 191 ~T~~ff~~~~~FGl~----~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 266 (493)
T PLN02435 191 ATRKFFESHKYFGLE----ADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVD 266 (493)
T ss_pred HHHHHHHhCCCCCCC----ccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEE
Confidence 67777753 334421 1123332211100 0000 0112477775554432 45555567889999
Q ss_pred EEcCcee-cccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE-CCCCc--EEEEEecCCcccccccccccccccC
Q 009817 219 ILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLLGF 294 (524)
Q Consensus 219 vl~gD~l-~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i-d~~g~--V~~~~EKp~~~~~~~~~v~t~~~~l 294 (524)
+.+.|.+ ...---.++-.+...+.++..-+.+...+. +.-|++.. +.+|+ |+++.|-+...... ..-++..|
T Consensus 267 v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~-~~~~~g~L-- 342 (493)
T PLN02435 267 CYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMASA-INQQTGRL-- 342 (493)
T ss_pred EEecccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHhc-cCcccccc--
Confidence 9999995 444335677788888998877655443221 34565543 34454 66666644322110 00011111
Q ss_pred CccccccCCcceeeeEEEEeHHHHHHHHH
Q 009817 295 SPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 295 ~~~~~~~~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
.-...+++.++|+-++|.++.+
T Consensus 343 -------~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 -------RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred -------ccchhhHHHhhccHHHHHHHHH
Confidence 2356788999999999988653
No 234
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.99 E-value=3.8e-05 Score=72.49 Aligned_cols=67 Identities=25% Similarity=0.408 Sum_probs=43.0
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.+||+-+.||++|.|...+.+|+.--+ ...+.=.++++ +.||.|++| +|-.||+|++||+|+++...
T Consensus 88 vVIgeta~IGddv~I~~gVTLGgtg~~-~g~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 88 VVIGETAVIGDDVTIYHGVTLGGTGKE-SGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred EEEcceeEECCCeEEEcceEecCCCCc-CCCCCCccCCC---eEECCCCEEEcceEECCCCEECCCceEccC
Confidence 345555555555555444444431000 01234466777 899999988 68999999999999999875
No 235
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.98 E-value=3.5e-05 Score=66.62 Aligned_cols=19 Identities=5% Similarity=0.118 Sum_probs=12.0
Q ss_pred eeEECCCCEECCCcEEeCC
Q 009817 475 NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~ 493 (524)
.++|+++|.||.++.|...
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g 74 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPG 74 (107)
T ss_pred CEEECCCCEECCCCEECCC
Confidence 4566666666666666654
No 236
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.98 E-value=6.5e-05 Score=71.98 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=58.4
Q ss_pred ccCCCeEEcC-eee---eceEECCCCEECceEEeceEEcCCcEECCCCEEe--ceEEeCCccccchhhHHhhhcCCccce
Q 009817 392 RFLPPTKIDN-CRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGADYYQTESEIASLLAEGKVPI 465 (524)
Q Consensus 392 ~i~p~~~i~~-~~i---~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~--~s~i~~~~~~~~~~~~~~~~~~g~~~~ 465 (524)
.+.||.++.. ..| .++.|+.+|.+.--......||+++.|++++.|. ..+.+|++ +
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~------------------v 92 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD------------------T 92 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC------------------C
Confidence 5566776642 222 2455666666531011236788888888888775 34444443 5
Q ss_pred EeCCCcEEe----------------------------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCE
Q 009817 466 GVGRNTKIR----------------------------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKAT 517 (524)
Q Consensus 466 ~Ig~~~~I~----------------------------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~ 517 (524)
.|++++.|. .++||+++.||.++.|... ++||++++
T Consensus 93 ~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g----------------~~Ig~~~~ 156 (192)
T PRK09677 93 LIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPG----------------VSIGNGCI 156 (192)
T ss_pred EECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCC----------------CEECCCCE
Confidence 666666553 3567777777777777765 36666666
Q ss_pred eCCCccc
Q 009817 518 IEDGMVI 524 (524)
Q Consensus 518 i~~gtvI 524 (524)
|++|++|
T Consensus 157 Iga~s~v 163 (192)
T PRK09677 157 VGANSVV 163 (192)
T ss_pred ECCCCEE
Confidence 6666543
No 237
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.96 E-value=3.3e-05 Score=66.18 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=12.9
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||+++.| .+++|.+++.||+++.|..
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~ 87 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGA 87 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECC
Confidence 444444444 3444444444444444443
No 238
>PRK10191 putative acyl transferase; Provisional
Probab=97.95 E-value=2.7e-05 Score=71.32 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=25.3
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||+++.|. +|.|..+++||+++.|..+.
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags 123 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGS 123 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCC
Confidence 6889988885 78888888888888888875
No 239
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.92 E-value=5.7e-05 Score=76.00 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=17.6
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.|+.| +..||+||.||.|+++..+
T Consensus 232 ~~IGagA~I-GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 232 CLLGANSGL-GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred cEECCCCEE-CeEECCCCEECCCCEEeCC
Confidence 566666666 5666666666666666655
No 240
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=97.91 E-value=5.6e-05 Score=64.43 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=34.5
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcE---EeeeEECCCCE
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK---IRNCIIDKNVK 483 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~---I~~~iI~~~~~ 483 (524)
+.|+++++|... .+++||+++.||++|.|.+ + +.|++++. ++.++|++++.
T Consensus 9 ~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~-----~-------------------~~i~~~~~~~~~~~~~Ig~~~~ 62 (101)
T cd03354 9 AKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQ-----G-------------------VTLGGKGKGGGKRHPTIGDNVV 62 (101)
T ss_pred CEECCCEEECCC--CeEEECCCCEECCCCEEcC-----C-------------------CEECCCccCCcCCCCEECCCcE
Confidence 444444444421 1356677777776666532 2 44444453 45677777777
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
|+.++.+...
T Consensus 63 Ig~~~~i~~~ 72 (101)
T cd03354 63 IGAGAKILGN 72 (101)
T ss_pred EcCCCEEECc
Confidence 7777777654
No 241
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.90 E-value=5.5e-05 Score=71.92 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=18.8
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+++.||.++++..
T Consensus 136 v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 6677777663 567777777777776664
No 242
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.83 E-value=7.8e-05 Score=68.22 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.3
Q ss_pred ceEEcCCcEECCCCEEece
Q 009817 422 HSIVGERSRLDYGVELKDT 440 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s 440 (524)
.+.||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5788888888888888654
No 243
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.81 E-value=0.00066 Score=69.66 Aligned_cols=212 Identities=12% Similarity=0.180 Sum_probs=121.6
Q ss_pred eEEEEeCCCCCcccCCccCCCccceee---cCcchhHHHHHHHHHhcC--------C-CeEEEEeccC-chhHHHHHHH-
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQFN-SASLNRHIAR- 161 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~sG--------i-~~I~Ivt~~~-~~~l~~hl~~- 161 (524)
.+|+||||.||||+ ..-||-++|| .|+ +++|+.++++.... . =-.+|.|.+. .++..+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47999999999996 4689999999 478 99999999886532 1 2457888765 4567777753
Q ss_pred hhhcCCcccCCCeEEEE--------ccccCCC--CCCCCc-----ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCce
Q 009817 162 TYFGNGTNFGDGFVEVL--------AATQTPG--ESGKNW-----FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDH 224 (524)
Q Consensus 162 ~y~~~~~~~~~~~V~vl--------~~~q~~~--e~~~~~-----~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~ 224 (524)
.||+-. ...|.++ ...+..- .....| +-|.++...... ..+++....+.+++.+..-|.
T Consensus 78 ~yFGl~----~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN 153 (315)
T cd06424 78 NYFGLE----KDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTN 153 (315)
T ss_pred CccCCC----cccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecch
Confidence 334321 1123222 1000000 000111 347776544332 234444457889999998887
Q ss_pred ec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE-C-CCCc--E--EEEEecCCcccc---cccccccccccC
Q 009817 225 LY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-D-NMGR--I--AQFAEKPSGANL---KAMQVDTSLLGF 294 (524)
Q Consensus 225 l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i-d-~~g~--V--~~~~EKp~~~~~---~~~~v~t~~~~l 294 (524)
.. ..-.--++-.+...++++...+.+.... +.-|++.. + .+|+ | +++.|=+..... ....++. ..++
T Consensus 154 ~L~~~adP~fiG~~~~~~~d~~~k~v~~~~~--E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~ 230 (315)
T cd06424 154 ALAFKAIPAVLGVSATKSLDMNSLTVPRKPK--EAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGF 230 (315)
T ss_pred hhhhccChhhEEEEecCCCceEeEEEeCCCC--CceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cccc
Confidence 44 4334455556677788887666554332 45675542 2 2333 4 666654421110 0000100 1112
Q ss_pred CccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 295 ~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
+.+-.++++++|+-+.+.+.++..
T Consensus 231 -------s~f~gNi~~~~f~l~~~~~~l~~~ 254 (315)
T cd06424 231 -------SPFPGNINQLVFSLGPYMDELEKT 254 (315)
T ss_pred -------ccCCCeeeeEEEeHHHHHHHHhhc
Confidence 235679999999999888777653
No 244
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=0.00038 Score=66.88 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=80.7
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCch--hHHHHHHHhhhcCCcc
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA--SLNRHIARTYFGNGTN 169 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~--~l~~hl~~~y~~~~~~ 169 (524)
.++.+||-|-=.+||| .-|.|+|+++. |||+++|+++.++ -+++|+|.|....+ .|..+.. .
T Consensus 2 ~~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~------- 66 (241)
T COG1861 2 SMILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-S------- 66 (241)
T ss_pred CcEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-H-------
Confidence 3455555555556777 45999999999 9999999999998 57999999987654 2433332 1
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccCH-HHHHHHHHHcCCcE
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRDADI 244 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta-~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~dl-~~ll~~h~~~~ad~ 244 (524)
.| +.|+ +|.. +.|.++...++. .+.+.++=+.||. +.+..+ ..+++.|.++++|.
T Consensus 67 ~G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 67 HG---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred cC---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 22 3333 2554 455556655552 3446788889999 556554 77889999998874
No 245
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.72 E-value=0.0012 Score=62.23 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=62.0
Q ss_pred CCccceeecC--cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcc
Q 009817 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (524)
Q Consensus 115 ~PKpLlpIgG--k~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~ 192 (524)
.+|+|++++| + |||+++++.+. +.+++|+|+++.. +. |. .++ +.++.. ... .
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~-~~--------~~----~~~---~~~i~d-~~~-------g 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPG-QP--------LP----ELP---APVLRD-ELR-------G 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCC-cc--------cc----cCC---CCEecc-CCC-------C
Confidence 5899999999 9 99999999765 5689999999764 21 10 111 334432 221 1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHc
Q 009817 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDR 240 (524)
Q Consensus 193 ~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~ 240 (524)
+|...++..++..... ...+.++++.||+ +...+ +..+++.+...
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 4666666655544321 2358999999999 33444 56777655433
No 246
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.70 E-value=0.00016 Score=68.64 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=53.5
Q ss_pred ceEECCCCEEC-ceEE---eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECC
Q 009817 406 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDK 480 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i---~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~ 480 (524)
+..||..|+++ ++.+ .+..||.++.|+++|.|... ..-....+.......+.-|+.||++++|. +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~-----~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN-----SHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC-----CCCCChhhcccCCceecCCeEECCCeEEcCccEECC
Confidence 56777777777 4432 23456666666666666543 11111122221113334479999999995 899999
Q ss_pred CCEECCCcEEeCCC
Q 009817 481 NVKIGKDVVIVNKD 494 (524)
Q Consensus 481 ~~~Ig~~~~i~~~~ 494 (524)
+++||+|++|..++
T Consensus 142 GV~IG~gavigags 155 (190)
T COG0110 142 GVTIGEGAVIGAGS 155 (190)
T ss_pred CEEECCCcEEeeCC
Confidence 99999999999886
No 247
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.68 E-value=2.6e-05 Score=78.73 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=30.1
Q ss_pred ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+|.||+++.||++|+|.+.+.+.+ +.+-.+ ..++.++.|+.|++|.|+.||.+++|.+.
T Consensus 276 ~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~---~~~~~~s~i~s~ivg~~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDGVRLQD----------STILGA---DYYETHSEISSSIVGWNVPIGIWARIDKN 334 (371)
T ss_pred ccEECCCceECCCcEecCceEEEe----------eEEEcc---ceechhHHHHhhhccccccccCceEEecc
Confidence 455555555555555555554444 112222 24444455555556666666666555554
No 248
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.0031 Score=67.21 Aligned_cols=212 Identities=17% Similarity=0.320 Sum_probs=124.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeec-CcchhHHHHHHHHHhc----CCC-eEEEEeccCchhHHHHH-HHhhh
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHI-ARTYF 164 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~~~~l~~hl-~~~y~ 164 (524)
-.++.+|+||||.||||+- .-||.+++|. |+ +++|.+++.+..+ +++ ..+|.+..+.++-..++ ...|+
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 4678899999999999974 4799999999 77 9999998887653 443 56778888875544443 35665
Q ss_pred cC-Cccc---CCCeEE-EEccccCC---CCCC-CCcc-cCcHHHHHHHHH--HHHhhhcCCCCeEEEEcCceecc-cCHH
Q 009817 165 GN-GTNF---GDGFVE-VLAATQTP---GESG-KNWF-QGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYR-MDYM 231 (524)
Q Consensus 165 ~~-~~~~---~~~~V~-vl~~~q~~---~e~~-~~~~-~Gta~al~~a~~--~i~~~~~~~~e~~Lvl~gD~l~~-~dl~ 231 (524)
+. ..++ .-..+. ++..+..+ .+.. ..|+ -|+++-...... .+++....+.+.+.|.+.|.|.- .| -
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD-~ 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVD-L 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccC-H
Confidence 53 1111 000011 11110000 0001 1233 566654332222 34444446889999999999653 34 3
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCcceEEE-ECCCCcEEEEEecCCcccccccccccccccCCccccccCCccee-ee
Q 009817 232 DFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MG 309 (524)
Q Consensus 232 ~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~-~G 309 (524)
.++.++...+.+.++=+...... ..+-|++. .|..-+|+++.|-|.....+-+ -+ + .......+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~-s~--------~--~~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFT-SD--------G--KLKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhc-cc--------c--ceeeeccccce
Confidence 56778888888876654432221 14566654 8888899999988764221000 00 0 00112334 77
Q ss_pred EEEEeHHHHHH
Q 009817 310 VYVFKKDVLFK 320 (524)
Q Consensus 310 IYvf~~~vL~~ 320 (524)
+|+++.+.+.+
T Consensus 326 l~~~~~~~l~~ 336 (472)
T COG4284 326 LHLFSVKFLKE 336 (472)
T ss_pred eehhHHHHHHh
Confidence 88888887754
No 249
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.61 E-value=0.0002 Score=81.52 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=47.6
Q ss_pred ceEECCCCEECceEE---eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCC
Q 009817 406 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (524)
Q Consensus 406 ~siIg~g~~I~~~~i---~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~ 481 (524)
.+.||+||.|....+ ....||++|.|+++|.|.+..+.++. +--| |+.||+||.|. +|+|.+|
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~-----------l~~g--~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR-----------LHTG--PVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc-----------eeec--CcEECCCcEECCCCEEcCC
Confidence 456667777664222 23567888888887777653322110 0011 37888888884 7888888
Q ss_pred CEECCCcEEeCCC
Q 009817 482 VKIGKDVVIVNKD 494 (524)
Q Consensus 482 ~~Ig~~~~i~~~~ 494 (524)
++||++++|..++
T Consensus 179 ~~Igd~a~vgagS 191 (695)
T TIGR02353 179 TSIGDGAQLGHGS 191 (695)
T ss_pred CEECCCCEECCCC
Confidence 8888888887764
No 250
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.51 E-value=0.00031 Score=79.90 Aligned_cols=89 Identities=15% Similarity=0.325 Sum_probs=58.0
Q ss_pred ceEECCCCEECceEE-e--ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCC
Q 009817 406 DAIISHGCFLRECTV-E--HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (524)
Q Consensus 406 ~siIg~g~~I~~~~i-~--~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~ 481 (524)
.+.||++|.|+...+ + .+.||++|.|+++|.|+.. .+.+..+ -.+ ++.||++|.|. +|+|.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h-~~~~~~~---------~~~---~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTH-LFEDRVM---------KSD---TVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEec-ccccccc---------ccC---CeEECCCCEECCCCEECCC
Confidence 466677777764222 1 2689999999999988652 2222111 111 27888888885 6888888
Q ss_pred CEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 482 VKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 482 ~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
++||++++|...+ +|.++..|++|++
T Consensus 664 ~~IGd~a~Ig~~S----------------vV~~g~~vp~~s~ 689 (695)
T TIGR02353 664 VVMGEGSVLGPDS----------------LVMKGEEVPAHTR 689 (695)
T ss_pred CEECCCCEECCCC----------------EEcCCcccCCCCE
Confidence 8888888887763 5666666666664
No 251
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00035 Score=66.01 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=51.8
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe---eeEECCC
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR---NCIIDKN 481 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~---~~iI~~~ 481 (524)
.+.||.|.+|.+ |.++.||+-|+|+ |+.|+.+ +++|..-.=. .=.||+|
T Consensus 73 ~A~IG~g~fIdH--------g~GvVIgeta~IGddv~I~~g-------------------VTLGgtg~~~g~RhPtIg~~ 125 (194)
T COG1045 73 GAKIGRGLFIDH--------GTGVVIGETAVIGDDVTIYHG-------------------VTLGGTGKESGKRHPTIGNG 125 (194)
T ss_pred CCeECCceEEcC--------CceEEEcceeEECCCeEEEcc-------------------eEecCCCCcCCCCCCccCCC
Confidence 455677777775 6788888888885 4445555 5555433322 3477888
Q ss_pred CEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 482 VKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 482 ~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.||.|+.|.+. ..||+|+.|++|+||
T Consensus 126 V~IGagAkILG~----------------I~IGd~akIGA~sVV 152 (194)
T COG1045 126 VYIGAGAKILGN----------------IEIGDNAKIGAGSVV 152 (194)
T ss_pred eEECCCCEEEcc----------------eEECCCCEECCCceE
Confidence 888888888765 577777777777765
No 252
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00059 Score=65.50 Aligned_cols=31 Identities=35% Similarity=0.466 Sum_probs=20.0
Q ss_pred cceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.| .||+|+.|. .+.|-.|+.||+|++|..++
T Consensus 200 hP-~Igd~vliGaGvtILgnV~IGegavIaAGs 231 (269)
T KOG4750|consen 200 HP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGS 231 (269)
T ss_pred CC-cccCCeEEccccEEeCCeeECCCcEEeccc
Confidence 45 777777775 44555567777777776664
No 253
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.20 E-value=0.0013 Score=63.44 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=45.8
Q ss_pred CCeEEcCeee---eceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCc
Q 009817 395 PPTKIDNCRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (524)
Q Consensus 395 p~~~i~~~~i---~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~ 471 (524)
|+|.++.+.+ .+.+||+++.|+- .++|....+|+++.|.+.++-++ +.|+..|
T Consensus 8 p~Tr~e~~~ivv~gdViIG~nS~l~~-----~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~ 63 (277)
T COG4801 8 PNTRVEEAIIVVKGDVIIGKNSMLKY-----GVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWC 63 (277)
T ss_pred CCCceeeeeEEEeccEEEcccceeee-----eeeeeeEEeccCcEEeeeEEecc-------------------eeeeeee
Confidence 4455544333 3677777777763 46666666666666666666544 6666666
Q ss_pred EE-eeeEECCCCEECCCcEEeCC
Q 009817 472 KI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 472 ~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.+ .|.++.+++.||+.+.|.+.
T Consensus 64 kv~gNV~ve~dayiGE~~sI~gk 86 (277)
T COG4801 64 KVTGNVIVENDAYIGEFSSIKGK 86 (277)
T ss_pred EeeccEEEcCceEEeccceeeee
Confidence 66 36666666666666666544
No 254
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.16 E-value=0.00042 Score=61.87 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=12.0
Q ss_pred eEEcCCcEECCCCEEeceEEe
Q 009817 423 SIVGERSRLDYGVELKDTVML 443 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~ 443 (524)
..||+++.|+++|.+.-+-|.
T Consensus 85 ~hiGdhVFieE~cVVnAAqIg 105 (184)
T KOG3121|consen 85 VHIGDHVFIEEECVVNAAQIG 105 (184)
T ss_pred eeecceEEEecceEeehhhhe
Confidence 456666666666665543333
No 255
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00087 Score=64.37 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=16.8
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.||+|-.+.++ ...+||+-..||.+|.|-..+-+++
T Consensus 155 a~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 155 AKIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred hhcccceeeccc--cceeecceeEeccceeeecceeecc
Confidence 344455555422 1245555555555555544444443
No 256
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.04 E-value=0.0035 Score=57.31 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=17.2
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
++.||++|+|. +|+|..+++||++++|..+
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgag 103 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAG 103 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCC
Confidence 36666666663 5555555555555555554
No 257
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.93 E-value=0.0023 Score=57.69 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=36.2
Q ss_pred CCCccCCCeEE-cCeeee-ceEECCCCEECc-eEEe----ceEEcCCcEECCCCEEec
Q 009817 389 TSPRFLPPTKI-DNCRIK-DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKD 439 (524)
Q Consensus 389 ~~~~i~p~~~i-~~~~i~-~siIg~g~~I~~-~~i~----~siIg~~~~Ig~~~~I~~ 439 (524)
++..|.|.+.+ .++.|+ +.+|++||++.. +.+. --+||+++.|++-+.|.+
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 34556666655 445563 799999999984 3332 248999999999888876
No 258
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.13 Score=53.91 Aligned_cols=355 Identities=16% Similarity=0.202 Sum_probs=174.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc----CCC-eEEEEeccCchhHHHHHHHhhhcC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHIARTYFGN 166 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~~~~l~~hl~~~y~~~ 166 (524)
.+++..+=|-||.||-|+ -.-||.+++|-+-+..+|-.+.+..+. +++ -.++...++-++--..+.+.|.+.
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~ 177 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS 177 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC
Confidence 356677889999999997 457999999976658887776665543 333 345667777655444554666443
Q ss_pred Cc--------ccCCCeE-EEEccccCCCC-CCCCcc-cCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc-cCHHH
Q 009817 167 GT--------NFGDGFV-EVLAATQTPGE-SGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDYMD 232 (524)
Q Consensus 167 ~~--------~~~~~~V-~vl~~~q~~~e-~~~~~~-~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~-~dl~~ 232 (524)
.+ +|.+-.. +.++.....++ +.+.|| -|+++-..... ..++.+-..+.|.++|.+.|.+-. .|+ .
T Consensus 178 kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~ 256 (498)
T KOG2638|consen 178 KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-N 256 (498)
T ss_pred ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-H
Confidence 32 2221111 12322221111 234676 46665333221 223322235779999999999875 454 4
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCc-c-eEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeE
Q 009817 233 FIQSHVDRDADITISCAAVGESRASD-Y-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (524)
Q Consensus 233 ll~~h~~~~ad~tl~~~~~~~~~a~~-~-g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GI 310 (524)
+++...+.+.+..+=+.+.. ++.- - .++..+..=|..++..-|.....+=+ +. +.-.+.+++-
T Consensus 257 ILn~~i~~~~ey~MEvTdKT--~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFk-------S~------kkFkifNTNN 321 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKT--RADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFK-------SI------KKFKIFNTNN 321 (498)
T ss_pred HHHHHhcCCCceEEEecccc--hhhcccceEEeecCEEEEEEeccCChhHhhhhc-------cc------eeEEEeccCC
Confidence 55656666677666554432 2311 1 23444433344555555543210000 00 0112344444
Q ss_pred EEEeHHHHHHHHHhhCCCC--------Cchhhhh------HHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHhhcc
Q 009817 311 YVFKKDVLFKLLRWRYPTS--------NDFGSEI------IPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 311 Yvf~~~vL~~ll~~~~~~~--------~d~~~di------i~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~ 374 (524)
--++-..+.++++...-.. -+...++ +..+++. .+-.+..+. ..+..+-|-.|++-....|-.-
T Consensus 322 lWinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~l 401 (498)
T KOG2638|consen 322 LWINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDL 401 (498)
T ss_pred eEEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeec
Confidence 4445555666666532110 0111111 1222222 122222222 3455566666665544433221
Q ss_pred C-CCccccCCCCCCCCCCccCCCeEEcC--eeeec--eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCcccc
Q 009817 375 S-PAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 375 ~-~~~~~~~~~~~i~~~~~i~p~~~i~~--~~i~~--siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
. ..+.. +|.....+.+. ++++. .+|.. .-+-+==.| -.+.|-.|--++..|.|+.++++++.-+
T Consensus 402 d~Gsl~l-~~~r~~~t~P~----vkLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia---- 470 (498)
T KOG2638|consen 402 DNGSLTL-SPSRFGPTPPL----VKLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIA---- 470 (498)
T ss_pred cCCeEEe-chhhcCCCCCe----eecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEe----
Confidence 1 11111 11111111111 12221 11111 000000000 1123445555699999999999997654
Q ss_pred chhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 450 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 450 ~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
+...++.|.+|++++||+|--|++|-+
T Consensus 471 ----------~~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 471 ----------NEGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred ----------cCCCeeecCCCCeeecceEeccccccc
Confidence 233458899999999999988888743
No 259
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=96.67 E-value=0.0065 Score=57.51 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=13.8
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.|+.|- +..||+|+.||.++++..
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 4555555552 345555555555544443
No 260
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.51 E-value=0.002 Score=43.97 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=10.7
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEE
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i 490 (524)
+.|+.++.| .+|.|++++.|+.++.|
T Consensus 8 ~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 8 VIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEECCCcEecCCCEECCCCEEcCCCEE
Confidence 444444443 23444444444444444
No 261
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.48 E-value=0.0093 Score=57.69 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=60.4
Q ss_pred eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEEC
Q 009817 402 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~ 479 (524)
+.++-.++++....+ +..|...+++.+++|+.||.+.++++..++ ..||+.+.|+ .-++.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 455567888888888 577888889999999999999888888886 8889998885 56667
Q ss_pred CCCEECCCcEEeCC
Q 009817 480 KNVKIGKDVVIVNK 493 (524)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (524)
-+-.||+++.|.++
T Consensus 91 gdLdig~dV~Iegg 104 (277)
T COG4801 91 GDLDIGADVIIEGG 104 (277)
T ss_pred cccccccceEEecC
Confidence 77888888888887
No 262
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.30 E-value=0.0037 Score=42.66 Aligned_cols=32 Identities=13% Similarity=0.376 Sum_probs=15.8
Q ss_pred eEECCCCEEC-ceEE-eceEEcCCcEECCCCEEe
Q 009817 407 AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK 438 (524)
Q Consensus 407 siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~ 438 (524)
+.|+++|+|+ ++.| .++.||++|.|++++.|+
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4555555555 2322 235555555555555553
No 263
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.98 E-value=0.0086 Score=40.74 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=13.3
Q ss_pred eEECCCCEEC-ceEEeceEEcCCcEECCCCEE
Q 009817 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (524)
Q Consensus 407 siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I 437 (524)
..||++|+|+ ++.+ ...||++|.|+.|+.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 4667777777 3333 3455555555555444
No 264
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.68 E-value=0.0085 Score=40.75 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=3.5
Q ss_pred eEeCCCcEE
Q 009817 465 IGVGRNTKI 473 (524)
Q Consensus 465 ~~Ig~~~~I 473 (524)
+.||+||.|
T Consensus 2 v~IG~~~~i 10 (34)
T PF14602_consen 2 VTIGDNCFI 10 (34)
T ss_dssp EEE-TTEEE
T ss_pred eEECCCEEE
Confidence 444444444
No 265
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.30 E-value=0.47 Score=41.05 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=66.9
Q ss_pred ceeecCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sG--i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|..|..+++.++++.+.+.+ ..+++|+.+...+...+.+.+.. .. ... +..+.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~--~~~---~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA-KK--DPR---VIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH-hc--CCC---eEEEEecC---------CCChH
Confidence 3566666699999999999987 78999999887777766664332 11 011 22222111 14888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccCH-HHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 238 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~ 238 (524)
.++..++.... .+.++++.+|..+..++ ..++..+.
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 99988877663 58899999999998775 44434433
No 266
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.52 E-value=0.17 Score=48.06 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHH
Q 009817 127 RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206 (524)
Q Consensus 127 pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i 206 (524)
|||+++++.+..+++++++++++. +++.+++. .++ ++++.... .|...+++.++..+
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~~ 87 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHHh
Confidence 999999999999988889888874 33333321 122 44443221 18999999988766
Q ss_pred HhhhcCCCCeEEEEcCcee-c-ccCHHHHHHHHH
Q 009817 207 EDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHV 238 (524)
Q Consensus 207 ~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~ 238 (524)
.. ..+.++++.||+- . ...+.++++...
T Consensus 88 ~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 88 RE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 41 2358999999983 3 345788887653
No 267
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=94.29 E-value=0.045 Score=49.55 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=24.1
Q ss_pred CCCCCCCccCCCeEEcC-eee----eceEECCCCEECc-eEEe
Q 009817 385 TPFYTSPRFLPPTKIDN-CRI----KDAIISHGCFLRE-CTVE 421 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i----~~siIg~g~~I~~-~~i~ 421 (524)
+.+.....|.+++.++. +++ .+-+||+||.|++ +.|.
T Consensus 21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~ 63 (190)
T KOG4042|consen 21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIR 63 (190)
T ss_pred cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHH
Confidence 44555666777777764 333 4688999999985 4443
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.24 E-value=3 Score=36.84 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=71.2
Q ss_pred ceeecCcchhHHHHHHHHHhc--CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~s--Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
.+|.-+....|..+|+.+.+. ...+|+|+-....+...+.+ +.+.. ....++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~-~~~~~-----~~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEIL-EEYAE-----SDPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHH-HHHHC-----CSTTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccc-ccccc-----ccccccccccccc---------cccc
Confidence 467766667888999988876 44577776665544554444 34432 1123677654432 3778
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEEEE
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~~~ 249 (524)
.++..+..... .+.++++..|.++..+ +..+++...+.+.++.+...
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 88888877765 4799999999999877 78888988887776554443
No 269
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=91.99 E-value=0.67 Score=49.78 Aligned_cols=126 Identities=23% Similarity=0.331 Sum_probs=69.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCc--chhHHHHHHHHHhc----------CCC-eEEEEecc-CchhHHHH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGC--YRLIDIPMSNCINS----------GIN-KIFVLTQF-NSASLNRH 158 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk--~pLId~~l~~l~~s----------Gi~-~I~Ivt~~-~~~~l~~h 158 (524)
.++.++++|||.||||. ..-||-+.|+|-. ..|+++..+.+... |.+ ..+|.|.. ..+.-.+|
T Consensus 96 ~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 56889999999999997 4589999999843 15888777665421 211 23555554 34555555
Q ss_pred HHH-hhhcCCcccCCCeEEEEccccCC--CCCCC---C-------cccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee
Q 009817 159 IAR-TYFGNGTNFGDGFVEVLAATQTP--GESGK---N-------WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL 225 (524)
Q Consensus 159 l~~-~y~~~~~~~~~~~V~vl~~~q~~--~e~~~---~-------~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l 225 (524)
+.. .||+-. ...|.+.....-+ +..++ + -+.|.++..+.+...++|....+...+=+.+-|.+
T Consensus 173 f~~~~~FGl~----~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vdnv 248 (477)
T KOG2388|consen 173 FESHKYFGLK----PEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVDNV 248 (477)
T ss_pred HhhcCCCCCC----hhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEecce
Confidence 542 334321 0122222110000 00011 0 11477666666666677665566666666666653
No 270
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=88.96 E-value=0.86 Score=48.98 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=53.8
Q ss_pred hhhcCceEEEEec-CeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEE-cCeeeeceEECCCCEEC-
Q 009817 340 AIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLR- 416 (524)
Q Consensus 340 li~~~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i-~~~~i~~siIg~g~~I~- 416 (524)
.++...+...... +.++-+||-.+|++--..- +.+. +.. ..+...+.. .+..+ .++-|.+|+|..+|.++
T Consensus 223 ~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~-~~~-~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg~ 295 (414)
T PF07959_consen 223 LLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELG-IMR-RKFSHSPAT-TPSDSEASSCVINSILEGGVSVGP 295 (414)
T ss_pred HhhhccccccccCCceEEEecCCHHHHHhhccC----cccc-cce-eeeeccccc-cccccCCCeeEEEeEecCCceECC
Confidence 3444555555554 6788899998776542221 1110 000 001111111 01122 23455677888888887
Q ss_pred ceEEeceEEcCCcEECCCCEEeceEEeC
Q 009817 417 ECTVEHSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 417 ~~~i~~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
++.|+||.|+.+++||++|.|.+.-+..
T Consensus 296 ~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 296 GSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred CCEEEeeecCCCCEECCCCEEECCcccc
Confidence 5677888888888888887777654443
No 271
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=84.64 E-value=8 Score=36.93 Aligned_cols=106 Identities=17% Similarity=0.087 Sum_probs=62.3
Q ss_pred eeEEEEe---CCCCCcccCCcc-CCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 95 VAAIILG---GGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 95 m~aVILA---aG~GtRL~PLT~-~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|.+||+- ++.-|||.|.-. ..-+-++ +-|+-.++..+... +.+|.|++.... +-. +
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~-----laML~dvi~Al~~~-~~~i~Vvtpde~--~~~------------~ 60 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA-----LAMLVDVLGALAGV-LGEITVVTPDEE--VLV------------P 60 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH-----HHHHHHHHHHhhhh-cCCceEEcCChH--hhh------------h
Confidence 4566764 467788877521 1111111 25677777777554 789999997522 111 1
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHH
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHV 238 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~ 238 (524)
+.. .+|+... +.-.|+.++++.+.. + +.++|+.+|. +...+++++++..+
T Consensus 61 a~~-~~vl~d~------------dLN~Ai~aa~~~~~~----p-~~v~vvmaDLPLl~~~~i~~~~~~~~ 112 (210)
T COG1920 61 ATK-LEVLADP------------DLNTAINAALDEIPL----P-SEVIVVMADLPLLSPEHIERALSAAK 112 (210)
T ss_pred ccc-ceeeecc------------chHHHHHHHHhhCCC----C-cceEEEecccccCCHHHHHHHHHhcC
Confidence 111 2445431 345678888777651 2 6799999998 44567888876543
No 272
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=83.21 E-value=21 Score=34.15 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=65.2
Q ss_pred ceeecCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi----~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
++|.-+..+.+...++.+.+... -+|+|+-+...+...+.+. .+..+ . ..+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~~~~---~--~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EYAAK---D--PRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HHHhc---C--CeEEEEeCCC----------CC
Confidence 45666665778888888877644 3777776665555555553 33221 1 2255554321 25
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEE
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADIT 245 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~t 245 (524)
-+.++..+....+ .+.++++.+|.....+ +.++++.+.+.+.++.
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 5667766665543 5899999999988766 6888876665555443
No 273
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=82.51 E-value=1.7 Score=51.23 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=32.9
Q ss_pred CEEeceEEeCCccccchhhHHhhhcCCccceEeCCC-cEEeeeEECCCCEECCCcEEeCCC
Q 009817 435 VELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 435 ~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~-~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.+.++++-.. +.+|++ ++|+||.|+.+++||.+++|.+..
T Consensus 332 ~~v~ns~~~~~-------------------~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~ 373 (974)
T PRK13412 332 MFVQNAVLSGK-------------------LTAENATLWIENSHVGEGWKLASRSIITGVP 373 (974)
T ss_pred eEEEeeEecCC-------------------cccCCCeEEEEeeEecCCeEEcCCcEEeccc
Confidence 45667777666 788887 558899999999999999999874
No 274
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=82.38 E-value=19 Score=32.69 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=65.5
Q ss_pred eeecCcchhHHHHHHHHHhc----CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCc
Q 009817 120 VPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (524)
Q Consensus 120 lpIgGk~pLId~~l~~l~~s----Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gt 195 (524)
+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+. .+.. ++. .+.++...+. .|-
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G~ 67 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FGK 67 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CCc
Confidence 45555545667777777766 256777776554444444442 3321 121 2344443332 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEEE
Q 009817 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (524)
Q Consensus 196 a~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~~ 248 (524)
+.++..+..... .+.++++.+|.....+ +.++++...+.+.++.+..
T Consensus 68 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 68 GAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred cHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 888887776653 4889999999887766 6888887566666554433
No 275
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.25 E-value=39 Score=29.66 Aligned_cols=99 Identities=8% Similarity=0.072 Sum_probs=63.4
Q ss_pred ceeecCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sG--i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|.-+...++...++.+.+.- ..+|+|+-....+...+.+. .+.. .+.++..... .|.+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~-~~~~--------~~~~~~~~~~---------~g~~ 63 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLR-ELFP--------EVRLIRNGEN---------LGFG 63 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHH-HhCC--------CeEEEecCCC---------cChH
Confidence 3566666578899999988763 45777776655545444443 2211 2455432221 4888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcC
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRD 241 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 241 (524)
.++..++.... .+.++++..|..+..+ +..+++...+..
T Consensus 64 ~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 64 AGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 88888876653 5888999999988766 577777655543
No 276
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=77.29 E-value=42 Score=31.53 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=63.3
Q ss_pred eeecCcchhHHHHHHHHHhc------CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCccc
Q 009817 120 VPVAGCYRLIDIPMSNCINS------GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (524)
Q Consensus 120 lpIgGk~pLId~~l~~l~~s------Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~ 193 (524)
+|.-+....|...++.+.+. .--+|+|+-+...+...+.+ +.|.. .++. .+.++...+. .
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~-~~~~~---~~~~-~i~~i~~~~n---------~ 68 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVA-RKLAR---KNPA-LIRVLTLPKN---------R 68 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHH-HHHHH---hCCC-cEEEEEcccC---------C
Confidence 45555435566667666653 22366666544444333333 33321 1111 1344443322 4
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEEE
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~~ 248 (524)
|-+.++..+..... .+.++++.+|..+..+ +.++++...+.+.++.+..
T Consensus 69 G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 69 GKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 88899988876653 4899999999988765 7888877555566655543
No 277
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=77.22 E-value=40 Score=29.34 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred ceeecCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sG--i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
.+|.-+....|..+|+.+.+.. .-+|+|+-....+...+.+. .+.... . ..+.++...+. .|.+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~-~~~~~~---~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILE-ELAALY---I-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHH-HHhccc---c-ceEEEEEeccc---------CCch
Confidence 3566666578888888888764 34777776655544444443 331110 0 11333332222 4788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
.++..++.... .+.++++.+|.+...+ +.+++..+.+
T Consensus 68 ~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 68 GALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred HHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 88887776553 5889999999988766 5666455544
No 278
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=75.30 E-value=53 Score=30.86 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=63.7
Q ss_pred ceeecCcchhHHHHHHHHHhcC---CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCc
Q 009817 119 AVPVAGCYRLIDIPMSNCINSG---INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sG---i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gt 195 (524)
.+|.-+....|...++.+.+.- --+|+||-....+...+.+ +.|... . ..+.++..... .|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~-~~~~~~---~--~~i~~~~~~~n---------~G~ 66 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIV-RELAKE---Y--PRVRLIVRPGK---------RGL 66 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHH-HHHHHh---C--CceEEEecCCC---------CCh
Confidence 3566665456778887777642 2366666544334343333 333221 1 12455543322 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEE
Q 009817 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (524)
Q Consensus 196 a~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~ 247 (524)
+.|+..++.... .+.++++.+|.....+ +..+++...+.+.++...
T Consensus 67 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 67 GSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888887776543 4788899999887765 678887755556655433
No 279
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=74.73 E-value=64 Score=31.09 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=59.4
Q ss_pred cceeecCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCccc
Q 009817 118 PAVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (524)
Q Consensus 118 pLlpIgGk~pLId~~l~~l~~sGi----~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~ 193 (524)
-++|..|....|...|+.+.+... -+|+|+.....+...+.+ +.+... .+.++..... .
T Consensus 33 Vvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~~~~-------~v~~i~~~~~---------~ 95 (251)
T cd06439 33 IIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA-REYADK-------GVKLLRFPER---------R 95 (251)
T ss_pred EEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH-HHHhhC-------cEEEEEcCCC---------C
Confidence 445555654567777777766432 257776665554444444 333211 2555543221 3
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHH
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (524)
|-+.++..+..... .+.++++.+|.+...+ +.++++...
T Consensus 96 g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 96 GKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred ChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 77888887776653 4899999999988766 577777664
No 280
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=74.72 E-value=50 Score=31.36 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=62.8
Q ss_pred ceeecCcc-hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHH
Q 009817 119 AVPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (524)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~ 197 (524)
++|.-|.. ..|...++.+.+..-.+|+|+.....+...+.+.+.. .+ ..+.++.... .|-+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~-----~~--~~~~v~~~~~----------~g~~~ 67 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV-----KY--GGIFVITVPH----------PGKRR 67 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc-----cC--CcEEEEecCC----------CChHH
Confidence 45666665 6888899988876556888887766665555542111 11 1244554222 37777
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHH
Q 009817 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (524)
Q Consensus 198 al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (524)
++..++... ..+.++++.+|..+..+ +..+++...
T Consensus 68 a~n~g~~~a------~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHV------TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHh------CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 777665544 35899999999999877 577776654
No 281
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.12 E-value=65 Score=29.25 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=57.6
Q ss_pred eeecCcchhHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHH
Q 009817 120 VPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (524)
Q Consensus 120 lpIgGk~pLId~~l~~l~~sGi~--~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~ 197 (524)
+|.-+....|+..++.+.+.... +|+|+-+...+...+.+. .+..+ .+.+... +. .|-+.
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~-~~~~~-------~~~~~~~-~~---------~g~~~ 65 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK-KYEDK-------ITYWISE-PD---------KGIYD 65 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH-HhHhh-------cEEEEec-CC---------cCHHH
Confidence 45555546788889888776544 566664443444444442 33111 1233321 11 37888
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 198 al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
++..++...+ .+.++++.+|..+..+ +..+++....
T Consensus 66 a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 66 AMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred HHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHh
Confidence 8887776543 5899999999987655 6777744433
No 282
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=70.81 E-value=70 Score=29.44 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=59.2
Q ss_pred ceeecCcc-hhHHHHHHHHHhcCCC--eEEEEeccCch-hHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 119 AVPVAGCY-RLIDIPMSNCINSGIN--KIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~sGi~--~I~Ivt~~~~~-~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
.+|.-+.. ..+..+++.+.+.-.. +|+|+-+...+ .+...+ +.|..+. ..+.++..... .|
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~-~~~~~~~-----~~~~~~~~~~~---------~g 70 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVL-KKYAAQD-----PRIKVVFREEN---------GG 70 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHH-HHHHhcC-----CCEEEEEcccC---------CC
Confidence 35555654 5677777777765332 66666444333 233333 3332211 12555433221 37
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHH-HHcCCc
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH-VDRDAD 243 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h-~~~~ad 243 (524)
-+.++..++.... .+.++++..|.....+ +..+++.+ ...+.+
T Consensus 71 ~~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 71 ISAATNSALELAT------GEFVALLDHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred HHHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence 7888777765543 4889999999988776 68888776 333443
No 283
>PRK10073 putative glycosyl transferase; Provisional
Probab=70.78 E-value=51 Score=34.09 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=64.3
Q ss_pred ceeecCcchhHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi~--~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
.+|+-+....|...|+.+.+.-.. +|+|+-....+.-.+ +.+.|... . ..+.++... . .|.+
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~-i~~~~~~~---~--~~i~vi~~~--n--------~G~~ 74 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVE-IAKHYAEN---Y--PHVRLLHQA--N--------AGVS 74 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHH-HHHHHHhh---C--CCEEEEECC--C--------CChH
Confidence 356556557888899998876433 555554333322222 22344221 1 236666422 1 3777
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEE
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~ 247 (524)
.|...++... ..+.++++.+|.++..+ +..+++...+.+.|+.+.
T Consensus 75 ~arN~gl~~a------~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 75 VARNTGLAVA------TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 7776666544 35899999999888766 677887766667776543
No 284
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=70.28 E-value=72 Score=30.79 Aligned_cols=110 Identities=12% Similarity=-0.022 Sum_probs=62.6
Q ss_pred ceeecCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi----~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
++|.-|..-.|...++.+.+.-. -+|+|+.....+.-.+.+ +.+ ... ....+.++.... ..|
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~-~~~---~~~~i~~~~~~~---------~~G 71 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RAL-RLP---SIFRVVVVPPSQ---------PRT 71 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHh-ccC---CCeeEEEecCCC---------CCc
Confidence 45665554567788888876532 156666554444333333 333 110 011133332211 137
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEEE
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~~ 248 (524)
-+.|+..++... ..+.++++.+|.....+ +.++++...+.+.++.++.
T Consensus 72 ~~~a~n~g~~~a------~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 72 KPKACNYALAFA------RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred hHHHHHHHHHhc------CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 788888777654 35899999999998877 5788887765445554443
No 285
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=69.18 E-value=77 Score=31.83 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=63.6
Q ss_pred ceeecCcc-hhHHHHHHHHHhcC---C-CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCccc
Q 009817 119 AVPVAGCY-RLIDIPMSNCINSG---I-NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (524)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~sG---i-~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~ 193 (524)
.+|.-+.. .+|...|+.+.+.- . .+|+||-+...+...+.+.+.+... .. ..+.++..... .
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~--~~--~~v~vi~~~~n---------~ 69 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK--YL--PKVKVLRLKKR---------E 69 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh--cC--CcEEEEEcCCC---------C
Confidence 35666664 58888888887642 1 3777776554443333332211111 11 23677654332 4
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCC
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (524)
|-+.+.-.++... ..+.++++++|.....+ +.++++...+...
T Consensus 70 G~~~a~N~g~~~A------~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAA------TGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHc------cCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 7788877776554 35899999999988766 6888887765443
No 286
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=68.82 E-value=96 Score=28.52 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=59.3
Q ss_pred ceeecCcc--hhHHHHHHHHHhcC--CCeEEEEeccC-chhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCccc
Q 009817 119 AVPVAGCY--RLIDIPMSNCINSG--INKIFVLTQFN-SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (524)
Q Consensus 119 LlpIgGk~--pLId~~l~~l~~sG--i~~I~Ivt~~~-~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~ 193 (524)
++|+.+.. ..|+.+|+.+.+.- -.+|+|+-... .+...+.+ +.|..+ +. +.++...+. .
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~-~~~~~~---~~---i~~i~~~~n---------~ 66 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVL-EEFKRK---LP---LKVVPLEKN---------R 66 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHH-HHHHhc---CC---eEEEEcCcc---------c
Confidence 46776552 27889999988753 24666654443 23333323 344221 22 555543322 3
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
|.+.+...+.... ..+.++++.+|.+...+ +..+++...+
T Consensus 67 G~~~a~N~g~~~a------~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 67 GLGKALNEGLKHC------TYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred cHHHHHHHHHHhc------CCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 8888887776543 35889999999988776 5777776543
No 287
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=68.82 E-value=64 Score=31.29 Aligned_cols=49 Identities=20% Similarity=0.099 Sum_probs=35.5
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEE
Q 009817 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (524)
Q Consensus 193 ~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~ 247 (524)
.|-+.|+..++... ..+.++++.+|..++.+ +.++++...+.++++...
T Consensus 79 ~G~~~a~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHA------SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHc------CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 37788887776544 35889999999988765 678888776666766443
No 288
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.13 E-value=82 Score=29.50 Aligned_cols=106 Identities=5% Similarity=0.046 Sum_probs=60.8
Q ss_pred ceeecCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi----~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
++|..|....|...|+.+.+.-. -+|+|+-....+...+.+. +... .....+.++...... ..|
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~--~~~~---~~~~~v~~~~~~~~~-------~~g 69 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE--FAAA---KPNFQLKILNNSRVS-------ISG 69 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH--HHHh---CCCcceEEeeccCcc-------cch
Confidence 46666665678888888866422 3566665544444333332 2111 111235555433211 136
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCC
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (524)
-+.++..+.... ..+.++++.+|.+...+ ++++++.+.+.+.
T Consensus 70 ~~~a~n~g~~~~------~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 70 KKNALTTAIKAA------KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred hHHHHHHHHHHh------cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 666766665443 35899999999988776 5777776655443
No 289
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=63.78 E-value=89 Score=28.37 Aligned_cols=105 Identities=11% Similarity=-0.019 Sum_probs=58.4
Q ss_pred eeecCcchhHHHHHHHHHhc-----CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 120 VPVAGCYRLIDIPMSNCINS-----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 120 lpIgGk~pLId~~l~~l~~s-----Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
+|.-+....|...++.+.+. ..-+|+|+-+...+...+.+ +.+... . ..+.++...+. .|
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~-~~~~~~---~--~~i~~i~~~~n---------~G 67 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEIL-RELAAR---D--PRVKVIRLSRN---------FG 67 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHH-HHHHhh---C--CCEEEEEecCC---------CC
Confidence 45544423444555544321 22367777665444433333 343211 1 12555543332 48
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEE
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl 246 (524)
.+.|+..++.... .+.++++.+|..+..+ +..+++. .+.+.++.+
T Consensus 68 ~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 68 QQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred cHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 8888887765543 4889999999988766 5777776 444555443
No 290
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=59.44 E-value=16 Score=35.70 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=49.8
Q ss_pred eeEEEEeCC---CCCcccCCccCCCccceeecCc----chhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCC
Q 009817 95 VAAIILGGG---AGTKLFPLTLRAATPAVPVAGC----YRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (524)
Q Consensus 95 m~aVILAaG---~GtRL~PLT~~~PKpLlpIgGk----~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~ 167 (524)
|.+||+.-. .=|||.|. ++-..+ ..|+..++..+.. ++ |+|++... .+.+.. .
T Consensus 1 m~~VIPvK~~~~aKSRLs~~--------L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~--~v~~~a-~------ 60 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV--------LSPEEREALALAMLRDVLAALRA--VD-VVVVSRDP--EVAALA-R------ 60 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT--------S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTTT-T------
T ss_pred CeEEEEcCCCCccccccCcc--------CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch--hhhhhh-h------
Confidence 577887643 34888653 111111 1578888888876 66 77777532 111100 0
Q ss_pred cccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHH
Q 009817 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSH 237 (524)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h 237 (524)
..++ ++++.+.. .|.-.||.++.... ..+.++++++|+ +...++..+++..
T Consensus 61 ~~~g---~~vl~d~~----------~gLN~Al~~a~~~~------~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 61 ARLG---AEVLPDPG----------RGLNAALNAALAAA------GDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ---S---SEEEE-------------S-HHHHHHHHHH-H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred hccC---CeEecCCC----------CCHHHHHHHHHhcc------CCCceEEeecCCccCCHHHHHHHHhcc
Confidence 0223 56665441 37888888883222 358999999998 4456788887654
No 291
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=58.20 E-value=1.5e+02 Score=27.08 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=61.5
Q ss_pred ceeecCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi----~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
++|.-+....|..+++.+.+... -+|+|+.....+...+.+ +.+ +. .+.+..... ..|
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~-~~~-------~~-~~~~~~~~~---------~~g 63 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVA-RAA-------GA-TVLERHDPE---------RRG 63 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHH-HHc-------CC-eEEEeCCCC---------CCC
Confidence 46776765778888888876533 356666655544443333 222 11 122221111 137
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCH-HHHHHHHHHcCCcE
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADI 244 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~ 244 (524)
-+.++..+...... .....+.++++.+|.....++ ..+++.+.+ +.++
T Consensus 64 k~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~ 112 (183)
T cd06438 64 KGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFAA-GARV 112 (183)
T ss_pred HHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCe
Confidence 88888877765520 012357899999999998774 677766543 4443
No 292
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=58.19 E-value=1e+02 Score=33.26 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=58.7
Q ss_pred ceeecCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi--~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|..|...-|..+++.+.+..- -+|+|+.....+...+.+. ++..+ + ..+.++...+. +|-+
T Consensus 80 iIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~-~~~~~---~--~~v~vv~~~~n---------~Gka 144 (444)
T PRK14583 80 LVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLD-ALLAE---D--PRLRVIHLAHN---------QGKA 144 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHH-HHHHh---C--CCEEEEEeCCC---------CCHH
Confidence 44444443556777777766532 3677776554444333332 22111 1 12555543222 4778
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
.++..+.... ..|.++++.+|.+.+.+ +..+++.+.+
T Consensus 145 ~AlN~gl~~a------~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 145 IALRMGAAAA------RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 8887776543 35899999999999877 5777766544
No 293
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=56.68 E-value=1.2e+02 Score=28.89 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=58.2
Q ss_pred ceeecCcc-hhHHHHHHHHHhcCC--CeEEEEeccCchh-HHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 119 AVPVAGCY-RLIDIPMSNCINSGI--NKIFVLTQFNSAS-LNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~sGi--~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
++|.-+.. .+|...++.+.+... -+|+|+-+...+. +.+.+ +.+.. +++ ..+.++...+.. |
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i-~~~~~---~~~-~~i~~i~~~~~~---------G 68 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPV-EAHCA---QLG-ERFRFFHVEPLP---------G 68 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHH-HHHHH---HhC-CcEEEEEcCCCC---------C
Confidence 46777764 378888999887643 3666665543322 22222 12211 011 124444433222 4
Q ss_pred -cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHH
Q 009817 195 -TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (524)
Q Consensus 195 -ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (524)
-++++..+..... ...+.++++..|.+...+ +.++++...
T Consensus 69 ~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 69 AKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 4777777765543 124789999999988776 677777654
No 294
>PRK10018 putative glycosyl transferase; Provisional
Probab=53.78 E-value=2.5e+02 Score=28.35 Aligned_cols=97 Identities=9% Similarity=0.157 Sum_probs=56.7
Q ss_pred eeecCcchhHHHHHHHHHhcCCC--eEEEEeccCc--hhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCc
Q 009817 120 VPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNS--ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (524)
Q Consensus 120 lpIgGk~pLId~~l~~l~~sGi~--~I~Ivt~~~~--~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gt 195 (524)
+|.-+....|...|+.+.+.-.. +|+|+-.... +.+.+++ +. +.+..+.++..... .|.
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~-~~-------~~~~ri~~i~~~~n---------~G~ 73 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYV-TA-------LNDPRITYIHNDIN---------SGA 73 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHH-HH-------cCCCCEEEEECCCC---------CCH
Confidence 45555546778888888765443 5555533222 1222222 11 12224666653332 478
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 196 a~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
+.|.-.++... ..+.++++.+|.++..+ +..+++...+
T Consensus 74 ~~a~N~gi~~a------~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 74 CAVRNQAIMLA------QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHc------CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 88777766554 35899999999988776 6777775543
No 295
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.32 E-value=1.9e+02 Score=26.69 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=59.0
Q ss_pred eeecCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHH
Q 009817 120 VPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (524)
Q Consensus 120 lpIgGk~pLId~~l~~l~~sGi--~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~ 197 (524)
+|.-+....|...++.+.+.-. .+|+|+-+...+...+.+. .+.. .+. +.++..... .|.+.
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~-~~~~---~~~---i~~~~~~~n---------~g~~~ 66 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLT-SLGD---LDN---IVYLRLPEN---------LGGAG 66 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHH-HhcC---CCc---eEEEECccc---------cchhh
Confidence 4555554678888888877532 3676766554445544443 2211 111 445543322 36777
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHH
Q 009817 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (524)
Q Consensus 198 al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (524)
++..++..... ...+.++++..|.+...+ +.++++...
T Consensus 67 ~~n~~~~~a~~---~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 67 GFYEGVRRAYE---LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHHHHhc---cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 77666654421 245789999999998877 466666554
No 296
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=52.81 E-value=2.5e+02 Score=29.55 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=61.7
Q ss_pred cCcchhHHHHHHHHHhcCC---CeEEEEeccCchhHHHHHHHhhhcCCcccC-CCeEEEEccccCCCCCCCCcccCcHHH
Q 009817 123 AGCYRLIDIPMSNCINSGI---NKIFVLTQFNSASLNRHIARTYFGNGTNFG-DGFVEVLAATQTPGESGKNWFQGTADA 198 (524)
Q Consensus 123 gGk~pLId~~l~~l~~sGi---~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~-~~~V~vl~~~q~~~e~~~~~~~Gta~a 198 (524)
-|....|...++.+.+... -+|+|+-+...+.-.+.+ +.+..+ +. ...+.++.....+ .+| .|-+.|
T Consensus 49 ~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~-~~~~~~---~~~~~~i~vi~~~~~~----~g~-~Gk~~A 119 (384)
T TIGR03469 49 RNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIA-RAAARA---YGRGDRLTVVSGQPLP----PGW-SGKLWA 119 (384)
T ss_pred CCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHH-HHHHHh---cCCCCcEEEecCCCCC----CCC-cchHHH
Confidence 3433667777777776533 367766655444332222 222111 11 1136666532221 122 366677
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcE
Q 009817 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADI 244 (524)
Q Consensus 199 l~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~ 244 (524)
+.++.....+. ....|.++++.+|.....+ +.++++...+.+.++
T Consensus 120 ~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 120 VSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 77776554311 0115889999999988776 588888777666543
No 297
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=51.69 E-value=2e+02 Score=26.60 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=52.8
Q ss_pred ceeecCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sG--i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
.+|+-+..+-|...|+.+.+.- --+|+|+.....+.-.+.+ +.+.. ++....+.++......+ ..+-+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~-~~~~~---~~~~~~~~~~~~~~~~g------~~~~~ 75 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVV-RKLIA---KYPNVDARLLIGGEKVG------INPKV 75 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHH-HHHHH---HCCCCcEEEEecCCcCC------CCHhH
Confidence 4566555456777788877642 2367666655443322222 22211 12212244554332211 01223
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h 237 (524)
.++..+.... ..+.++++.+|.....+ +.++++..
T Consensus 76 ~~~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEA------RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhC------CCCEEEEECCCceEChhHHHHHHHHh
Confidence 3444444332 35889999999988776 57777654
No 298
>PRK11204 N-glycosyltransferase; Provisional
Probab=50.21 E-value=2.2e+02 Score=30.13 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHH
Q 009817 127 RLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204 (524)
Q Consensus 127 pLId~~l~~l~~sGi--~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~ 204 (524)
..|...++.+.+... -+|+|+-....+...+.+ +.+.. ++ ..+.++...+. .|-++++..+..
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l-~~~~~---~~--~~v~~i~~~~n---------~Gka~aln~g~~ 131 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEIL-DRLAA---QI--PRLRVIHLAEN---------QGKANALNTGAA 131 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHH-HHHHH---hC--CcEEEEEcCCC---------CCHHHHHHHHHH
Confidence 456677777766532 367766654444433333 22211 11 12555542222 377888887766
Q ss_pred HHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 205 VFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 205 ~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
.. ..+.++++.+|.+...| +.++++...+
T Consensus 132 ~a------~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 132 AA------RSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred Hc------CCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 54 35899999999988877 5777776644
No 299
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=49.13 E-value=70 Score=30.22 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=53.2
Q ss_pred ceeecCcchhHHHHHHHHHhc--CCCeEEEEeccCchhH---HHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCccc
Q 009817 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASL---NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~s--Gi~~I~Ivt~~~~~~l---~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~ 193 (524)
++|..+..+.|...|+.+.+. .--+|+|+.....+.. .+.+.+.| +...+.++......+ ..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-------~~~~v~vi~~~~~~g------~~ 72 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-------PRVRVRVIRRPRNPG------PG 72 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-------GG-GEEEEE----HH------HH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-------CCCceEEeecCCCCC------cc
Confidence 466666657788888887763 2246666665444333 22222222 222366665433210 11
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCC
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (524)
+.+.++..++...+ .+.++++..|.+...+ +..+++.+.+.+.
T Consensus 73 ~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~ 116 (228)
T PF13641_consen 73 GKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGV 116 (228)
T ss_dssp HHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS-
T ss_pred hHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCC
Confidence 35667777766554 5899999999999777 5777777733333
No 300
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.85 E-value=2e+02 Score=26.48 Aligned_cols=98 Identities=7% Similarity=0.099 Sum_probs=56.5
Q ss_pred ceeecCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi--~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|.-+....|...|+.+.+.-. -+|+|+-....+...+.+ +.+... ++ ..+.++...+. .|-+
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~-~~~~~~---~~-~~~~~~~~~~~---------~G~~ 68 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEII-KEYIDK---DP-FIIILIRNGKN---------LGVA 68 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHH-HHHHhc---CC-ceEEEEeCCCC---------ccHH
Confidence 45666664678888888877532 256666544333333333 333211 11 12334433222 3777
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQS 236 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~ 236 (524)
.++..+.... ..+.++++..|..+..+ +..+++.
T Consensus 69 ~~~n~g~~~~------~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 69 RNFESLLQAA------DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHhC------CCCEEEEECCCcccChhHHHHHHHH
Confidence 7776664332 46889999999888766 6888776
No 301
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=46.77 E-value=2.8e+02 Score=29.84 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=56.1
Q ss_pred eecCcchhHHHHHHHHHhcCC--C--eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 121 PVAGCYRLIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 121 pIgGk~pLId~~l~~l~~sGi--~--~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
|.-|....|...++.+.+... + +|+|+-+...+...+.+. .+.. .+. .+.+...... .|-+
T Consensus 56 P~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~-~~~~---~~~--~v~v~~~~~~---------~Gka 120 (439)
T TIGR03111 56 PVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFC-RAQN---EFP--GLSLRYMNSD---------QGKA 120 (439)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHH-HHHH---hCC--CeEEEEeCCC---------CCHH
Confidence 444444677778888776543 2 466654443343333221 2211 111 1333322221 3788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
.|+..+..... .+.++++.+|.+.+.| +.++++...+
T Consensus 121 ~AlN~gl~~s~------g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 121 KALNAAIYNSI------GKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred HHHHHHHHHcc------CCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 88888776543 5789999999998877 5788777653
No 302
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=44.55 E-value=2.5e+02 Score=29.39 Aligned_cols=104 Identities=10% Similarity=0.033 Sum_probs=54.5
Q ss_pred ceeecCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi--~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|+.|..+.|...++.+.+... -+|+++.....+.-.+.+ +.+.. .+....+.++...+..+ | .+-.
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv-~~~~~---~~p~~~i~~v~~~~~~G-----~-~~K~ 115 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVV-RRLRA---DFPDADIDLVIDARRHG-----P-NRKV 115 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHH-HHHHH---hCCCCceEEEECCCCCC-----C-ChHH
Confidence 44555555677778887776543 366665544333222222 22211 12222355554333221 1 1333
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (524)
.++.++... ...|.++++.+|.....+ +.+++....
T Consensus 116 ~~l~~~~~~------a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 116 SNLINMLPH------ARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred HHHHHHHHh------ccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 445444322 246899999999988877 477766654
No 303
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=41.28 E-value=3.4e+02 Score=26.24 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=61.7
Q ss_pred hhHHHHHHHHH-hcCCCeEEEEeccCc----hhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHH
Q 009817 127 RLIDIPMSNCI-NSGINKIFVLTQFNS----ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201 (524)
Q Consensus 127 pLId~~l~~l~-~sGi~~I~Ivt~~~~----~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~ 201 (524)
|++-|.+.... +.|.+-=+|++...+ .+..+.+++.| +..+|-+..-.. .+|.+.|...
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y-------g~d~i~l~pR~~---------klGLgtAy~h 82 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY-------GEDNILLKPRTK---------KLGLGTAYIH 82 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh-------CCCcEEEEeccC---------cccchHHHHh
Confidence 45555555544 457764444444433 34455555444 223455554322 2588888887
Q ss_pred HHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEEEEEcC
Q 009817 202 FTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 202 a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
.+.+.. .+.++++.+|.-.... +.+|++..++.+-|+++.+...+
T Consensus 83 gl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~ 128 (238)
T KOG2978|consen 83 GLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAG 128 (238)
T ss_pred hhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcC
Confidence 776654 4667777888866544 58888887777778877765543
No 304
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=41.10 E-value=3.1e+02 Score=25.68 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=57.7
Q ss_pred ceeecCcc-hhHHHHHHHHHhcCCC----eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCccc
Q 009817 119 AVPVAGCY-RLIDIPMSNCINSGIN----KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (524)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~sGi~----~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~ 193 (524)
.+|.-|.. .++...++.+.+.... +|+|+-....+...+.+ +.+.. ++ .+.++...... .
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~~~---~~---~~~~~~~~~~~--------~ 70 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-AELGV---EY---GYRYLTRPDNR--------H 70 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH-HHhhc---cc---CceEEEeCCCC--------C
Confidence 35666642 3688888888875442 67777666555554444 33311 11 13344322211 1
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (524)
+-++++..++... ..+.++++..|.+.+.+ +.++++...+
T Consensus 71 ~~~~~~n~~~~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 71 AKAGNLNNALAHT------TGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CcHHHHHHHHHhC------CCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 3455666665443 35899999999988877 5777766544
No 305
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=41.07 E-value=3.6e+02 Score=26.52 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEeccC--chhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHH
Q 009817 128 LIDIPMSNCINSGINKIFVLTQFN--SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205 (524)
Q Consensus 128 LId~~l~~l~~sGi~~I~Ivt~~~--~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~ 205 (524)
.|...++.+.+. ..+|+||=+.. .+.+.+.+ . .+ ..+.++..... +|-|.|...++..
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~-----~---~~--~~i~~i~~~~N---------~G~a~a~N~Gi~~ 68 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNAR-----L---RG--QKIALIHLGDN---------QGIAGAQNQGLDA 68 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHh-----c---cC--CCeEEEECCCC---------cchHHHHHHHHHH
Confidence 566667666654 45666665442 12332221 1 11 23777754332 4889998888766
Q ss_pred HHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHc
Q 009817 206 FEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (524)
Q Consensus 206 i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~ 240 (524)
... ...+.++++..|.....+ +..+++...+.
T Consensus 69 a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 69 SFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred HHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 532 346899999999988766 56777665544
No 306
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=40.12 E-value=3.4e+02 Score=25.91 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=54.8
Q ss_pred ceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHHH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~a 198 (524)
++|.-+....|...|+.+... .++|+|+-+...+...+-+ +. ++ +.++.. . ..|-+.+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~-~~-------~~---~~v~~~-~---------~~g~~~~ 62 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIA-KE-------YG---AKVYQR-W---------WDGFGAQ 62 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHH-HH-------cC---CEEEEC-C---------CCChHHH
Confidence 455555546677777777553 3688877665444433322 22 22 344432 1 1477777
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceecccCH-HHHHHHHH
Q 009817 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 238 (524)
Q Consensus 199 l~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~ 238 (524)
...++... ..+.++++.+|.+...++ ..+++...
T Consensus 63 ~n~~~~~a------~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 63 RNFALELA------TNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHhC------CCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 76666554 347999999999888775 44544443
No 307
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=39.80 E-value=2.8e+02 Score=24.81 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=55.6
Q ss_pred ceeecCcchhHHHHHHHHHhc-C-CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINS-G-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~s-G-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|.-+....+..+|+.+.+. . ..+|+|+-....+...+.+ +.+.. .+....+.+....+. .|.+
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~-~~~~~---~~~~~~~~~~~~~~~---------~~~~ 68 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELI-EEFKS---QFPIPIKHVWQEDEG---------FRKA 68 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHH-HHHHh---hcCCceEEEEcCCcc---------hhHH
Confidence 356666556788889988764 2 3477766555444443333 23311 111112233322111 2455
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h 237 (524)
.+...+.... ..+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAA------KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHh------cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6666555543 35899999999988766 56666655
No 308
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.52 E-value=3.1e+02 Score=25.37 Aligned_cols=94 Identities=12% Similarity=0.000 Sum_probs=54.0
Q ss_pred ceeecCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sG--i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|+-+..+.|...|+.+.+.- ..+|+|+-+...+...+.+.+ . .+.++... .|-+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~---~~~~~~~~-----------~g~~ 61 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------A---GVVVISSP-----------KGRA 61 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------C---CeEEEeCC-----------cCHH
Confidence 4566666467888888877642 246666654433333333321 1 13344322 2566
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHc
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~ 240 (524)
.+...+..... .+.++++..|..+..+ +.+++......
T Consensus 62 ~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 62 RQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 66665654442 5899999999988766 46655544433
No 309
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=39.37 E-value=4.1e+02 Score=27.49 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=33.7
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH---cCCcEEEEE
Q 009817 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD---RDADITISC 248 (524)
Q Consensus 193 ~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~---~~ad~tl~~ 248 (524)
.|-+.|+..++... ..+.++++.+|..++.+ +..+++...+ .+.++.+..
T Consensus 148 ~G~~~A~~~Gi~~a------~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 148 KGKGGAVRIGMLAS------RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CChHHHHHHHHHHc------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 48889998876543 35889999999887754 5666665443 455544443
No 310
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=37.55 E-value=2.3e+02 Score=23.57 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=7.2
Q ss_pred CcEECCCCEEeceEEe
Q 009817 428 RSRLDYGVELKDTVML 443 (524)
Q Consensus 428 ~~~Ig~~~~I~~s~i~ 443 (524)
...|+.++.|++.+-.
T Consensus 36 ~v~i~~~~~v~G~i~~ 51 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKA 51 (101)
T ss_pred EEEEcCCCEEEEEEEE
Confidence 3444444444444433
No 311
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=36.60 E-value=3.5e+02 Score=32.11 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=59.8
Q ss_pred ceeecCcc-hhHHHHHHHHHhcCC--C--eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCccc
Q 009817 119 AVPVAGCY-RLIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (524)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~sGi--~--~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~ 193 (524)
++|.-|.. .++...+..+.+..- + +|+|+-....+...+... + ++ +.++...... .
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-~-------~~---v~yI~R~~n~--------~ 325 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-E-------VG---VKYIARPTHE--------H 325 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-H-------CC---cEEEEeCCCC--------c
Confidence 44555652 256677777765432 2 577666555555544332 2 22 4554322211 2
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCH-HHHHHHHHHcCCcEEEEE
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISC 248 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~tl~~ 248 (524)
|-++++..++... ..|.++++.+|++...++ +.++..+.+ +.++.++.
T Consensus 326 gKAGnLN~aL~~a------~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 326 AKAGNINNALKYA------KGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred chHHHHHHHHHhC------CCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 5678888777654 358999999999988774 666665544 33444443
No 312
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=31.52 E-value=68 Score=28.01 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.6
Q ss_pred CcchhHHHHHHHHHhcCCCeEEEEecc
Q 009817 124 GCYRLIDIPMSNCINSGINKIFVLTQF 150 (524)
Q Consensus 124 Gk~pLId~~l~~l~~sGi~~I~Ivt~~ 150 (524)
+. |-++..++.|.+.|.++|+|+--+
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vvPlf 69 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVVPVF 69 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEEchh
Confidence 45 899999999999999999886433
No 313
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=29.85 E-value=2.8e+02 Score=25.37 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=14.8
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|...+.+..-|=.+.-.|.+++++.+.
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~ 119 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFEGD 119 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEEeE
Confidence 55555555554444445555555554443
No 314
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=29.29 E-value=4.5e+02 Score=27.55 Aligned_cols=106 Identities=12% Similarity=0.133 Sum_probs=67.7
Q ss_pred cceeecCcch-hHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 118 PAVPVAGCYR-LIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 118 pLlpIgGk~p-LId~~l~~l~~sGi~--~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
-++|.-|..+ .++..++.+.+.... +|+++.....+...+.+.+.. . +++ ..+.+....+. ..|
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~-~---~~~-~~~~~~~~~~~--------~~g 124 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELG-A---EYG-PNFRVIYPEKK--------NGG 124 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHH-h---hcC-cceEEEecccc--------Ccc
Confidence 3455556556 899999999988654 777777766666666664322 1 121 12334311011 147
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCC
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (524)
-+.++..++...+ .|-++++.+|+....| +.+++....+.+.
T Consensus 125 K~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 125 KAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred chHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 7888887776543 5889999999999877 5888877755433
No 315
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=28.75 E-value=4.6e+02 Score=26.77 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=34.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cccC-HHHHHHHHH-HcCCcEEEEE
Q 009817 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSHV-DRDADITISC 248 (524)
Q Consensus 193 ~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~d-l~~ll~~h~-~~~ad~tl~~ 248 (524)
.|-+.|+..+.... ..+.++++.+|.. ++.+ +.++++... +.+.+++..+
T Consensus 101 ~Gkg~A~~~g~~~a------~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAAT------TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 48888888775443 3588999999996 6654 688887665 3455555544
No 316
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.15 E-value=4.5e+02 Score=25.96 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhc
Q 009817 129 IDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFG 165 (524)
Q Consensus 129 Id~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~ 165 (524)
..=.++.|...|+++|.|+|.|. +.+++.+. .||.
T Consensus 108 ~~A~~~AL~alg~~RIalvTPY~-~~v~~~~~-~~l~ 142 (239)
T TIGR02990 108 SSAAVDGLAALGVRRISLLTPYT-PETSRPMA-QYFA 142 (239)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc-HHHHHHHH-HHHH
Confidence 34566777778999999999995 45666664 4443
No 317
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=26.99 E-value=1e+02 Score=25.36 Aligned_cols=24 Identities=4% Similarity=0.146 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecc
Q 009817 127 RLIDIPMSNCINSGINKIFVLTQF 150 (524)
Q Consensus 127 pLId~~l~~l~~sGi~~I~Ivt~~ 150 (524)
|.++-.++.|...|+++|+++--+
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~ 68 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLA 68 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCc
Confidence 778888888877788887776543
No 318
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=26.53 E-value=5.3e+02 Score=24.02 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=57.5
Q ss_pred ceeecCcchhHHHHHHHHHhcCC---CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCc
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI---NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi---~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gt 195 (524)
++|.-+....|...|+.+.+.-. -+|+|+-....+...+-+ +.|.. ++....+.++...... .+..|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~-~~~~~---~~~~~~~~~~~~~~~~-----~~~~G~ 72 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEII-EKWRK---KLEDSGVIVLVGSHNS-----PSPKGV 72 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHH-HHHHH---hCcccCeEEEEecccC-----CCCccH
Confidence 35665554688888888877532 266666554333222222 23311 1111124443211100 112467
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcC
Q 009817 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRD 241 (524)
Q Consensus 196 a~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 241 (524)
+.|...+.... ..+.++++.+|.++..+ +..+++...+..
T Consensus 73 ~~a~N~g~~~a------~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 73 GYAKNQAIAQS------SGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HHHHHHHHHhc------CCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 77766554432 35899999999888765 567777665544
No 319
>PRK10063 putative glycosyl transferase; Provisional
Probab=25.72 E-value=6.4e+02 Score=24.66 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=54.2
Q ss_pred eecCcchhHHHHHHHHHh----cCCC-eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCc
Q 009817 121 PVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (524)
Q Consensus 121 pIgGk~pLId~~l~~l~~----sGi~-~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gt 195 (524)
|.-+....|...++.+.+ .+.+ +|+|+=+...+...+.+ +.|.. .+ .+.++.... .|.
T Consensus 8 ~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~-~~~~~---~~---~i~~i~~~~----------~G~ 70 (248)
T PRK10063 8 VAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFL-ENLNG---IF---NLRFVSEPD----------NGI 70 (248)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHH-HHhcc---cC---CEEEEECCC----------CCH
Confidence 444433567777777753 2222 55555443334333333 34321 11 255554221 388
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHc
Q 009817 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (524)
Q Consensus 196 a~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~ 240 (524)
++|+..++.... .+.++.+++|.++..+..+++......
T Consensus 71 ~~A~N~Gi~~a~------g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 71 YDAMNKGIAMAQ------GRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred HHHHHHHHHHcC------CCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 899888876543 588999998887777765555544433
No 320
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=24.21 E-value=5.9e+02 Score=23.79 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=53.1
Q ss_pred eeecCcc-hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHHH
Q 009817 120 VPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (524)
Q Consensus 120 lpIgGk~-pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~a 198 (524)
+|.-+.. ..|...|+.+.+. ..+|+|+=+. ++.-.... ..+ ....+.++..... +|-+.|
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~-s~~~~~~~-~~~-------~~~~i~~i~~~~n---------~G~~~a 63 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNS-SGNDIELR-LRL-------NSEKIELIHLGEN---------LGIAKA 63 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCC-CCccHHHH-hhc-------cCCcEEEEECCCc---------eehHHh
Confidence 4444444 5677788887776 4566555433 32211111 111 1123566654332 477778
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHH
Q 009817 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFI 234 (524)
Q Consensus 199 l~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll 234 (524)
...+..... +...+.++++.+|.....+ +..++
T Consensus 64 ~N~g~~~a~---~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 64 LNIGIKAAL---ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhHHHHHHH---hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 777766543 1245899999999998876 46664
No 321
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=20.45 E-value=9.5e+02 Score=27.75 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEE
Q 009817 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (524)
Q Consensus 194 Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~ 247 (524)
+-++++..++... ..+.++++.+|++...| +.+++..+.+ +.++.++
T Consensus 215 ~KAgnLN~al~~a------~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 215 AKAGNINNALKHT------DGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred CChHHHHHHHHhc------CCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 4577887776554 35899999999999877 4777776543 3334433
Done!