Query 009818
Match_columns 524
No_of_seqs 233 out of 1649
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 17:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09522 bifunctional glutamin 100.0 2.9E-80 6.4E-85 669.3 25.6 366 99-513 51-459 (531)
2 PRK14607 bifunctional glutamin 100.0 1.6E-77 3.4E-82 648.6 29.0 372 99-513 47-455 (534)
3 COG0547 TrpD Anthranilate phos 100.0 2.1E-74 4.6E-79 592.6 27.3 262 213-512 2-263 (338)
4 PRK07394 hypothetical protein; 100.0 4.4E-71 9.6E-76 570.2 26.9 267 214-516 4-278 (342)
5 PLN02641 anthranilate phosphor 100.0 1.2E-69 2.6E-74 559.8 25.2 259 214-513 3-261 (343)
6 PRK08136 glycosyl transferase 100.0 6.3E-69 1.4E-73 549.3 26.2 257 213-510 1-265 (317)
7 PRK00188 trpD anthranilate pho 100.0 3E-66 6.5E-71 533.0 26.3 261 213-512 1-261 (339)
8 PRK09071 hypothetical protein; 100.0 5.9E-65 1.3E-69 521.2 27.0 255 213-511 2-262 (323)
9 TIGR01245 trpD anthranilate ph 100.0 5.3E-65 1.2E-69 522.3 23.8 255 219-511 1-256 (330)
10 PF00591 Glycos_transf_3: Glyc 100.0 8.8E-50 1.9E-54 394.2 9.8 189 294-514 2-190 (252)
11 KOG1438 Anthranilate phosphori 100.0 3.6E-47 7.9E-52 377.7 11.9 260 226-514 18-295 (373)
12 PRK06078 pyrimidine-nucleoside 100.0 1.7E-44 3.6E-49 381.6 21.4 207 213-441 1-227 (434)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 1.2E-42 2.7E-47 365.0 20.5 224 216-456 2-241 (405)
14 PRK04350 thymidine phosphoryla 100.0 7.6E-41 1.6E-45 357.4 20.9 210 216-446 82-307 (490)
15 PRK05820 deoA thymidine phosph 100.0 4.8E-38 1E-42 333.1 23.6 219 213-447 2-240 (440)
16 TIGR02645 ARCH_P_rylase putati 100.0 1.1E-36 2.4E-41 325.5 23.7 215 216-446 87-316 (493)
17 TIGR02643 T_phosphoryl thymidi 100.0 4.9E-36 1.1E-40 317.0 21.2 217 215-447 3-239 (437)
18 TIGR03327 AMP_phos AMP phospho 100.0 2.9E-35 6.3E-40 314.8 23.7 217 215-447 87-318 (500)
19 COG0213 DeoA Thymidine phospho 99.8 3.1E-18 6.8E-23 179.7 16.6 218 213-446 2-237 (435)
20 PF02885 Glycos_trans_3N: Glyc 99.7 3.7E-17 7.9E-22 132.2 7.9 65 214-285 1-65 (66)
21 COG0512 PabA Anthranilate/para 99.7 3.3E-17 7.1E-22 157.5 6.7 105 97-211 46-176 (191)
22 KOG0026 Anthranilate synthase, 99.2 6E-12 1.3E-16 119.3 4.8 105 99-212 66-200 (223)
23 PLN02889 oxo-acid-lyase/anthra 99.1 6.4E-11 1.4E-15 136.1 4.4 64 98-164 133-197 (918)
24 PRK08007 para-aminobenzoate sy 98.9 5.4E-10 1.2E-14 106.8 4.0 103 99-211 46-173 (187)
25 PRK07649 para-aminobenzoate/an 98.7 1.3E-08 2.9E-13 98.1 3.7 106 99-209 46-171 (195)
26 KOG1224 Para-aminobenzoate (PA 98.5 2.4E-08 5.1E-13 108.2 1.8 103 99-209 67-200 (767)
27 TIGR00566 trpG_papA glutamine 98.5 1.1E-07 2.3E-12 91.1 3.7 108 100-212 47-175 (188)
28 PLN02335 anthranilate synthase 98.4 3.8E-07 8.2E-12 89.8 4.7 109 98-210 64-197 (222)
29 CHL00101 trpG anthranilate syn 98.3 5.5E-07 1.2E-11 86.2 4.8 107 98-209 45-172 (190)
30 PRK06774 para-aminobenzoate sy 98.2 7.9E-07 1.7E-11 84.9 3.9 118 99-221 46-187 (191)
31 PRK08857 para-aminobenzoate sy 98.2 1.1E-06 2.3E-11 84.3 3.9 120 98-222 45-189 (193)
32 PLN02771 carbamoyl-phosphate s 98.2 6.5E-07 1.4E-11 95.9 2.6 106 99-209 284-404 (415)
33 PRK05670 anthranilate synthase 98.2 1.4E-06 3.1E-11 83.0 4.5 107 99-210 46-172 (189)
34 PRK06895 putative anthranilate 98.1 1.5E-06 3.1E-11 83.1 3.6 107 98-209 45-172 (190)
35 TIGR01815 TrpE-clade3 anthrani 98.0 3E-06 6.4E-11 96.5 2.9 122 98-224 561-710 (717)
36 PRK05637 anthranilate synthase 97.9 7.1E-06 1.5E-10 80.3 4.0 119 99-223 47-206 (208)
37 TIGR01823 PabB-fungal aminodeo 97.9 7.6E-06 1.7E-10 93.6 3.7 104 99-209 56-186 (742)
38 PRK12838 carbamoyl phosphate s 97.8 2E-05 4.3E-10 83.2 4.5 107 99-210 211-333 (354)
39 PRK07765 para-aminobenzoate sy 97.8 2.6E-05 5.7E-10 76.5 4.6 122 94-220 44-190 (214)
40 TIGR01368 CPSaseIIsmall carbam 97.8 3E-05 6.4E-10 82.0 5.2 108 98-210 216-339 (358)
41 PRK13566 anthranilate synthase 97.7 2E-05 4.3E-10 90.0 3.2 107 99-211 572-700 (720)
42 cd01744 GATase1_CPSase Small c 97.7 3.8E-05 8.3E-10 72.7 3.9 107 98-209 41-163 (178)
43 cd01743 GATase1_Anthranilate_S 97.6 5.6E-05 1.2E-09 71.5 4.8 101 99-209 45-170 (184)
44 PRK12564 carbamoyl phosphate s 97.6 5.8E-05 1.2E-09 79.9 4.4 107 99-210 221-343 (360)
45 CHL00197 carA carbamoyl-phosph 97.5 0.00011 2.3E-09 78.5 4.7 107 99-210 236-357 (382)
46 PRK06490 glutamine amidotransf 97.1 0.0002 4.4E-09 71.5 2.2 115 94-210 50-182 (239)
47 PRK09065 glutamine amidotransf 97.1 0.00064 1.4E-08 67.7 4.9 111 99-211 57-190 (237)
48 PF00117 GATase: Glutamine ami 97.1 0.00011 2.3E-09 69.3 -0.7 116 94-213 40-179 (192)
49 PRK00758 GMP synthase subunit 96.8 0.00087 1.9E-08 63.5 2.9 104 98-210 43-165 (184)
50 PRK07567 glutamine amidotransf 96.7 0.0042 9E-08 62.2 7.5 116 96-213 51-196 (242)
51 cd01745 GATase1_2 Subgroup of 96.7 0.0043 9.4E-08 59.5 6.8 78 119-211 90-175 (189)
52 cd01742 GATase1_GMP_Synthase T 96.4 0.0029 6.2E-08 59.4 3.6 108 99-211 44-169 (181)
53 PLN02347 GMP synthetase 96.4 0.0027 5.9E-08 70.6 4.0 185 99-285 56-283 (536)
54 COG0505 CarA Carbamoylphosphat 95.9 0.013 2.8E-07 62.1 6.1 105 100-213 224-344 (368)
55 PRK11366 puuD gamma-glutamyl-g 95.6 0.01 2.2E-07 59.9 3.4 89 122-210 99-226 (254)
56 TIGR00888 guaA_Nterm GMP synth 95.1 0.034 7.3E-07 52.9 5.3 105 99-210 44-168 (188)
57 cd01741 GATase1_1 Subgroup of 94.5 0.058 1.3E-06 51.0 5.1 113 94-208 44-180 (188)
58 PRK05665 amidotransferase; Pro 94.1 0.14 3.1E-06 51.4 7.2 138 95-241 57-217 (240)
59 PRK00074 guaA GMP synthase; Re 93.6 0.059 1.3E-06 59.7 3.6 156 98-262 48-236 (511)
60 PRK13527 glutamine amidotransf 93.1 0.051 1.1E-06 52.5 1.9 120 95-216 43-190 (200)
61 PRK08136 glycosyl transferase 92.9 0.86 1.9E-05 48.0 10.8 121 98-240 8-151 (317)
62 PRK08250 glutamine amidotransf 92.8 0.092 2E-06 52.4 3.4 111 98-211 47-184 (235)
63 PRK09071 hypothetical protein; 91.8 1.2 2.5E-05 47.0 10.1 120 98-240 9-149 (323)
64 PRK07053 glutamine amidotransf 91.4 0.53 1.2E-05 47.1 6.9 112 100-213 51-184 (234)
65 PRK13141 hisH imidazole glycer 91.1 0.11 2.4E-06 50.2 1.6 91 118-209 61-186 (205)
66 TIGR01855 IMP_synth_hisH imida 90.7 0.28 6.1E-06 47.4 4.0 34 119-152 60-107 (196)
67 PRK13181 hisH imidazole glycer 90.6 0.24 5.3E-06 47.7 3.5 55 98-152 38-107 (199)
68 CHL00188 hisH imidazole glycer 89.5 0.25 5.3E-06 48.8 2.6 47 97-146 39-92 (210)
69 PF04282 DUF438: Family of unk 89.1 2.8 6.1E-05 35.3 8.1 56 215-280 2-57 (71)
70 PRK13152 hisH imidazole glycer 88.9 0.21 4.6E-06 48.3 1.6 42 99-144 40-89 (201)
71 cd01747 GATase1_Glutamyl_Hydro 88.9 0.5 1.1E-05 48.4 4.4 60 100-161 58-125 (273)
72 PRK13170 hisH imidazole glycer 88.5 0.41 8.8E-06 46.4 3.3 43 99-145 41-87 (196)
73 PRK07394 hypothetical protein; 88.1 4.1 8.9E-05 43.3 10.7 54 98-168 10-63 (342)
74 COG0518 GuaA GMP synthase - Gl 85.8 0.49 1.1E-05 46.5 2.2 106 99-207 48-175 (198)
75 cd01748 GATase1_IGP_Synthase T 85.6 0.36 7.8E-06 46.3 1.1 51 100-152 40-107 (198)
76 PF02885 Glycos_trans_3N: Glyc 85.1 1.4 3.1E-05 35.6 4.2 46 107-169 12-57 (66)
77 PRK05703 flhF flagellar biosyn 84.6 24 0.00051 38.6 14.5 208 215-447 142-366 (424)
78 COG0547 TrpD Anthranilate phos 77.7 13 0.00029 39.7 9.3 112 108-240 15-147 (338)
79 PRK09522 bifunctional glutamin 77.0 13 0.00028 41.9 9.5 48 106-170 209-256 (531)
80 TIGR03800 PLP_synth_Pdx2 pyrid 76.9 0.82 1.8E-05 44.1 0.1 121 94-217 35-180 (184)
81 cd01749 GATase1_PB Glutamine A 74.8 1.3 2.9E-05 42.2 1.0 99 119-218 59-181 (183)
82 PRK00188 trpD anthranilate pho 74.1 4.9 0.00011 42.4 5.0 46 106-168 12-57 (339)
83 PRK14607 bifunctional glutamin 73.9 17 0.00038 40.7 9.5 47 107-170 205-251 (534)
84 cd01746 GATase1_CTP_Synthase T 72.2 4.8 0.0001 40.5 4.2 55 93-152 52-108 (235)
85 PRK14004 hisH imidazole glycer 69.4 3.6 7.9E-05 40.6 2.7 47 97-146 37-90 (210)
86 PRK12724 flagellar biosynthesi 67.6 1.5E+02 0.0033 32.9 14.7 156 295-473 225-392 (432)
87 PLN02641 anthranilate phosphor 63.5 55 0.0012 35.0 10.2 108 107-240 14-145 (343)
88 PRK13525 glutamine amidotransf 63.4 5.7 0.00012 38.3 2.6 95 120-215 63-179 (189)
89 TIGR01245 trpD anthranilate ph 61.6 13 0.00028 39.2 5.1 38 106-152 6-43 (330)
90 PRK00771 signal recognition pa 61.6 2.2E+02 0.0048 31.5 14.7 155 214-382 4-188 (437)
91 PRK13146 hisH imidazole glycer 58.4 6 0.00013 38.8 1.9 35 118-152 65-113 (209)
92 KOG3179 Predicted glutamine sy 57.2 14 0.0003 37.4 4.1 170 77-263 40-239 (245)
93 PRK13143 hisH imidazole glycer 56.5 6.3 0.00014 38.2 1.6 34 118-152 60-107 (200)
94 TIGR03499 FlhF flagellar biosy 55.8 1.4E+02 0.0031 30.6 11.4 136 215-367 116-269 (282)
95 KOG0370 Multifunctional pyrimi 54.9 12 0.00025 45.1 3.6 56 100-160 214-271 (1435)
96 cd01554 EPT-like Enol pyruvate 52.2 48 0.001 35.0 7.5 104 250-356 9-129 (408)
97 PRK14723 flhF flagellar biosyn 52.0 4.9E+02 0.011 31.2 16.2 211 228-473 122-356 (767)
98 TIGR00337 PyrG CTP synthase. C 50.2 19 0.00042 40.7 4.3 50 98-152 345-396 (525)
99 COG2313 IndA Uncharacterized e 49.8 1.6E+02 0.0034 31.0 10.3 53 298-354 129-184 (310)
100 PRK12830 UDP-N-acetylglucosami 49.0 51 0.0011 35.0 7.1 104 250-355 20-138 (417)
101 PRK09369 UDP-N-acetylglucosami 48.8 46 0.001 35.4 6.8 105 250-355 20-139 (417)
102 PRK13142 hisH imidazole glycer 45.0 16 0.00035 35.9 2.5 44 98-145 38-87 (192)
103 PRK11889 flhF flagellar biosyn 42.7 5.3E+02 0.012 28.9 14.8 157 294-473 242-410 (436)
104 cd01555 UdpNAET UDP-N-acetylgl 42.0 57 0.0012 34.3 6.1 100 256-355 14-128 (400)
105 TIGR01072 murA UDP-N-acetylglu 39.9 54 0.0012 34.6 5.6 99 256-355 25-138 (416)
106 COG0540 PyrB Aspartate carbamo 38.7 1.6E+02 0.0035 31.5 8.7 109 316-440 62-185 (316)
107 PF11829 DUF3349: Protein of u 38.5 67 0.0014 28.7 5.0 68 212-285 22-89 (96)
108 cd08783 Death_MALT1 Death doma 38.3 1.8E+02 0.0038 26.2 7.5 62 213-283 23-86 (97)
109 TIGR03481 HpnM hopanoid biosyn 36.4 88 0.0019 30.8 6.1 65 215-286 34-98 (198)
110 PRK12726 flagellar biosynthesi 36.3 3.8E+02 0.0082 29.8 11.3 128 249-383 153-299 (407)
111 cd01556 EPSP_synthase EPSP syn 31.7 1.6E+02 0.0034 30.8 7.5 104 250-355 9-127 (409)
112 TIGR01859 fruc_bis_ald_ fructo 26.9 7.3E+02 0.016 25.8 12.1 55 398-454 150-213 (282)
113 smart00845 GatB_Yqey GatB doma 26.5 1E+02 0.0022 28.6 4.5 61 213-284 42-103 (147)
114 PRK10416 signal recognition pa 24.7 8.4E+02 0.018 25.7 18.5 110 215-334 31-152 (318)
115 PHA00438 hypothetical protein 23.8 1.1E+02 0.0024 26.5 3.7 48 229-283 33-80 (81)
116 COG0320 LipA Lipoate synthase 23.6 3.3E+02 0.0071 29.0 7.8 120 102-284 89-240 (306)
117 COG0563 Adk Adenylate kinase a 23.5 1.8E+02 0.0038 28.1 5.6 97 296-398 3-107 (178)
118 TIGR02644 Y_phosphoryl pyrimid 23.4 82 0.0018 34.7 3.6 219 105-349 9-254 (405)
119 TIGR01356 aroA 3-phosphoshikim 23.1 2.1E+02 0.0045 30.3 6.5 101 253-355 10-123 (409)
120 PLN02327 CTP synthase 23.0 1.7E+02 0.0036 33.7 6.0 54 93-152 360-415 (557)
121 PRK14806 bifunctional cyclohex 22.9 2.3E+02 0.0051 32.7 7.4 100 256-355 325-440 (735)
122 cd08788 CARD_NOD2_2_CARD15 Cas 22.7 1.5E+02 0.0032 25.9 4.3 59 215-290 16-75 (81)
123 PRK14974 cell division protein 21.8 5.6E+02 0.012 27.4 9.4 129 249-382 76-235 (336)
124 PRK00779 ornithine carbamoyltr 21.7 6.1E+02 0.013 26.6 9.5 110 323-452 68-187 (304)
125 COG0493 GltD NADPH-dependent g 21.7 9.9E+02 0.021 26.7 11.6 211 215-447 42-293 (457)
126 PF05494 Tol_Tol_Ttg2: Toluene 21.6 1.2E+02 0.0025 28.5 3.9 92 216-314 6-108 (170)
127 PRK09234 fbiC FO synthase; Rev 21.0 1.4E+03 0.03 27.7 13.3 28 210-237 9-36 (843)
128 PRK15117 ABC transporter perip 20.0 3.3E+02 0.0072 27.0 6.9 65 215-286 35-102 (211)
No 1
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.9e-80 Score=669.34 Aligned_cols=366 Identities=16% Similarity=0.210 Sum_probs=327.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~ 177 (524)
.|++||||+.|. +++...+. ++.+..++|++| |+|||.|+.+||+.+.+. ..+.|++.+. +.+.+..+|
T Consensus 51 ~IIlSpGPg~p~---d~~~~~~i-~~~~~~~iPILGIClG~QlLa~a~GG~V~~~-~~~~~G~~~~-----i~~~~~~lf 120 (531)
T PRK09522 51 VLMLSPGPGVPS---EAGCMPEL-LTRLRGKLPIIGICLGHQAIVEAYGGYVGQA-GEILHGKASS-----IEHDGQAMF 120 (531)
T ss_pred EEEEcCCCCChh---hCCCCHHH-HHHHhcCCCEEEEcHHHHHHHHhcCCEEEeC-CceeeeeEEE-----EeecCCccc
Confidence 699999999997 55555444 777788999999 999999999999999997 7788877542 222221122
Q ss_pred -----------------hhCCCceEEEeCCCCcccccCCCC----CCCCCCCC---------------------CccCcH
Q 009818 178 -----------------RALPPDVIFIADPEGSIMGGGGSI----GPHYSGND---------------------PREMRL 215 (524)
Q Consensus 178 -----------------~~lp~~~~f~a~p~G~iMg~~~~~----g~~~~~~~---------------------~~~m~l 215 (524)
..+|+.+.++|..||.+|+++|+. |++|.|.. .++..|
T Consensus 121 ~~~~~~~~v~~~Hs~~v~~lP~~l~vlA~sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~ 200 (531)
T PRK09522 121 AGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTL 200 (531)
T ss_pred cCCCCCcEEEEehheecccCCCCcEEEEecCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCCH
Confidence 468999999998899999999965 66776543 345679
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Q 009818 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 295 (524)
Q Consensus 216 ~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~~~~ 295 (524)
+++|+|+..|++||++||+++|+.|| +|+++|.|+||||++||+||||+|||+||++|||+++.+++.++...
T Consensus 201 ~~~l~~~~~~~~Lt~eea~~~~~~il-------~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~~~~ 273 (531)
T PRK09522 201 QPILEKLYQAQTLSQQESHQLFSAVV-------RGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLF 273 (531)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 99999999999999999999999999 99999999999999999999999999999999999998765433347
Q ss_pred eeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEEEE
Q 009818 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 375 (524)
Q Consensus 296 vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~GfaFL 375 (524)
+|+|||||||++|||+||+ +|+|+|++|+||+|||||++|||+|+ +|+||+|||+++++++++.++|++ .||+||
T Consensus 274 iD~~gtGgdg~~t~nist~-aa~v~A~~Gv~V~kHG~r~~ss~~Gs--advlealGi~~~~~~~~~~~~l~~--~g~~fl 348 (531)
T PRK09522 274 ADIVGTGGDGSNSINISTA-SAFVAAACGLKVAKHGNRSVSSKSGS--SDLLAAFGINLDMNADKSRQALDE--LGVCFL 348 (531)
T ss_pred ccccCCCCCCCCCcccHHH-HHHHHHhCCCcEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEE
Confidence 9999999999999999999 99999999999999999999999999 999999999999999999999999 999999
Q ss_pred cccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCceee
Q 009818 376 SLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSM 455 (524)
Q Consensus 376 fAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~DEi 455 (524)
|||.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++++|+++++|||| +|+||+
T Consensus 349 ~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G-~G~DEi 424 (531)
T PRK09522 349 FAPKYHTGFRHAMPVRQQLKTRTLFNVLGPL---INPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS-GGMDEV 424 (531)
T ss_pred EhhHhCHHHHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC-CCcccc
Confidence 9999999999999999999999999999997 999999999999999999999999999999999999999 899999
Q ss_pred cCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCCC
Q 009818 456 TTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPR 513 (524)
Q Consensus 456 S~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~~ 513 (524)
|++++ |.+.++ .++ ++++|+|+|+||||+.+++..
T Consensus 425 s~~~~--t~v~~~-----------------~~g----~i~~~~~~P~d~Gl~~~~~~~ 459 (531)
T PRK09522 425 SLHAP--TIVAEL-----------------HDG----EIKSYQLTAEDFGLTPYHQEQ 459 (531)
T ss_pred CCCCc--eEEEEE-----------------cCC----eEEEEEECHHHcCCCCCCHHH
Confidence 99998 556655 444 599999999999999988754
No 2
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.6e-77 Score=648.57 Aligned_cols=372 Identities=20% Similarity=0.308 Sum_probs=329.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhh--
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTF-- 172 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~---~~~~~-- 172 (524)
.|++||||..|. ++...++. ++.+...+|++| |+|||.|+.+||+.+.+. ..+.|+++++-... .+..+
T Consensus 47 ~vIlsgGP~~p~---~~~~~~~l-i~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~-~~~~~G~~~~v~~~~~~lf~~~~~ 121 (534)
T PRK14607 47 HIVISPGPGRPE---EAGISVEV-IRHFSGKVPILGVCLGHQAIGYAFGGKIVHA-KRILHGKTSPIDHNGKGLFRGIPN 121 (534)
T ss_pred EEEECCCCCChh---hCCccHHH-HHHhhcCCCEEEEcHHHHHHHHHcCCeEecC-CccccCCceeEEECCCcchhcCCC
Confidence 599999999997 55566665 777878899999 999999999999999998 66788887632110 11111
Q ss_pred ------hhHh-h--hhCCCceEEEe-CCCCcccccCCCC----CCCCCCCC-----------------CccCcHHHHHHH
Q 009818 173 ------WPLL-M--RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND-----------------PREMRLVGALRE 221 (524)
Q Consensus 173 ------~~~l-~--~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~-----------------~~~m~l~~~L~k 221 (524)
|-.+ + ..||+++.+++ +++|.|||++|+. |++|.|.. ..++.|+++|++
T Consensus 122 ~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~~~~~~~~~i~~ 201 (534)
T PRK14607 122 PTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQREEIDIKSYLKK 201 (534)
T ss_pred CcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhhccCCHHHHHHH
Confidence 1100 1 25899999998 8899999999976 77887764 235779999999
Q ss_pred HhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCCCCeeEEcC
Q 009818 222 VLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGE 301 (524)
Q Consensus 222 L~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~~~~vDi~GT 301 (524)
+.+|++||++||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++.+....+|+|||
T Consensus 202 l~~g~~Lt~~ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~~~~~D~~gt 274 (534)
T PRK14607 202 LVEGEDLSFEEAEDVMEDIT-------DGNATDAQIAGFLTALRMKGETADELAGFASVMREKSRHIPAPSPRTVDTCGT 274 (534)
T ss_pred hccCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCceEEccC
Confidence 99999999999999999999 99999999999999999999999999999999999998876543347999999
Q ss_pred CCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEEEEcccccC
Q 009818 302 PYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREAR 381 (524)
Q Consensus 302 GGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~GfaFLfAp~~h 381 (524)
||||++|||+||+ +|+|+|++|+||+|||||++|||+|+ +|+||+||++++++++++.++|++ .||+|||||.||
T Consensus 275 ggdg~~t~nist~-~a~v~A~~G~~V~kHG~r~~ss~~Gs--advle~lGv~~~~~~~~~~~~l~~--~g~~fl~ap~~~ 349 (534)
T PRK14607 275 GGDGFGTFNISTT-SAFVVAAAGVPVAKHGNRAVSSKSGS--ADVLEALGVKLEMTPEEAASVLRE--TGFSFLFAPLFH 349 (534)
T ss_pred CCCCCCccccHHH-HHHHHHhCCCcEEEECCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeeccccC
Confidence 9999999999999 99999999999999999999999999 999999999999999999999999 999999999999
Q ss_pred hhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCceeecCCCcc
Q 009818 382 PSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRS 461 (524)
Q Consensus 382 Pam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~DEiS~~~~~ 461 (524)
|+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++.+|.++++||||.||+||+|++++
T Consensus 350 p~l~~~~~~R~~Lg~rTifN~lgpL---~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G~~G~dE~s~~~~- 425 (534)
T PRK14607 350 PAMKHAAPARRELGIRTAFNLLGPL---TNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSGIDGYDEISTCGP- 425 (534)
T ss_pred HHHHHHHHHHHHhCCCcHHHhHHhc---cCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccCCCc-
Confidence 9999999999999999999999997 999999999999999999999999999999999999999999999999988
Q ss_pred cceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCCC
Q 009818 462 VNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPR 513 (524)
Q Consensus 462 ~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~~ 513 (524)
|.+.++ +++ ++.+++|+|+|||++.+++..
T Consensus 426 -t~v~~~-----------------~~g----~i~~~~i~p~~~Gl~~~~~~~ 455 (534)
T PRK14607 426 -TQILEL-----------------EDG----EIVTYTFDPEELGLKRVDPEE 455 (534)
T ss_pred -eEEEEE-----------------cCC----EEEEEEEcHHHCCCCCCCHHH
Confidence 446554 344 589999999999999887743
No 3
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-74 Score=592.62 Aligned_cols=262 Identities=23% Similarity=0.318 Sum_probs=248.6
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 009818 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (524)
Q Consensus 213 m~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~ 292 (524)
|.++++|+|+.+|++|+++||+++|+.|| +|+++|+|+||||+|||+||||++||+||++||++++.+++++.
T Consensus 2 ~~~~~~l~kl~~g~~L~~~eA~~l~~~il-------~g~~~~~qi~A~L~Alr~Kget~eEi~G~~~am~~~~~~~~~p~ 74 (338)
T COG0547 2 MDLRKILKKLGRGRDLDREEARELFKAIL-------SGEASPAQIGAFLTALRIKGETPEEIAGFAEAMREHAPKLPVPA 74 (338)
T ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccCCCCC
Confidence 56899999999999999999999999999 99999999999999999999999999999999999888877764
Q ss_pred CCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcE
Q 009818 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (524)
Q Consensus 293 ~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~Gf 372 (524)
...+|+|||||||.+||||||+ +|||+|++|+||+|||||++|||+|| +||||+||||++++|++++++|++ .||
T Consensus 75 ~~~vDi~GTGGDg~~T~NiSt~-aA~v~A~~Gv~VaKHGnrs~sSksGs--aDvleaLGv~l~~~~e~~~~~l~~--~g~ 149 (338)
T COG0547 75 ADPVDIVGTGGDGANTINISTA-AAIVAAAAGVPVAKHGNRSVSSKSGS--ADVLEALGVNLELSPEQAARALEE--TGI 149 (338)
T ss_pred CCCCCeecCCCCCCCcccchHH-HHHHHHhCCCcEEeECCCCCCCCCcH--HHHHHHcCCCCCCCHHHHHHHHHh--cCe
Confidence 3348999999999999999999 99999999999999999999999999 999999999999999999999999 999
Q ss_pred EEEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCc
Q 009818 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (524)
Q Consensus 373 aFLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~ 452 (524)
+|||||.|||+|++++++|++||+||++|..+++ +||+++++||+|||||+|++++|++|+++|.++++||||.||+
T Consensus 150 ~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL---~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~~Gl 226 (338)
T COG0547 150 GFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPL---LNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGLEGL 226 (338)
T ss_pred EEEEccccCHHHHHHHHHHHHcCCCchHHhhccc---cCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECCCCc
Confidence 9999999999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCC
Q 009818 453 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTP 512 (524)
Q Consensus 453 DEiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~ 512 (524)
||+++.+. |.+.++ +++ ++++|+++|+|||++++++.
T Consensus 227 DE~~~~~~--t~v~~l-----------------~~g----~i~~~~l~pe~~Gl~~~~~~ 263 (338)
T COG0547 227 DEVTPTGT--TLVAEL-----------------KDG----EIREYTLTPEDFGLERAPLE 263 (338)
T ss_pred ccccCCCC--ceEEEE-----------------cCC----ceEEEEeCHHhcCCCCCchh
Confidence 99999988 557665 434 59999999999999996653
No 4
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-71 Score=570.18 Aligned_cols=267 Identities=27% Similarity=0.373 Sum_probs=247.6
Q ss_pred cHHHHHHHHhcCC----CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009818 214 RLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP 289 (524)
Q Consensus 214 ~l~~~L~kL~~G~----~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~ 289 (524)
.|+++|++|.+|+ +||++||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++
T Consensus 4 ~~~~~i~~l~~g~~~~~~Lt~eea~~~~~~il-------~g~~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~~ 76 (342)
T PRK07394 4 RFRELLKKVGSGEHTSKDLTREEAADALKLML-------LGEATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKLQ 76 (342)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCCC
Confidence 4899999999995 999999999999999 99999999999999999999999999999999999998775
Q ss_pred CCC-CCCeeEEcCCCCCC-CccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCC-CHHHHHHHHH
Q 009818 290 VAD-VKSLTHYGEPYDGN-TRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL-SVLQAKELLE 366 (524)
Q Consensus 290 ~~~-~~~vDi~GTGGDG~-~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~l-spe~a~~~Le 366 (524)
.+. ...+|+|||||||+ +|||+||+ +|+|+|++|+||+|||||++|||||.|++||||+|||+++. +++++.++|+
T Consensus 77 ~~~~~~~~d~~GtggDG~~~t~NiSt~-aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~ 155 (342)
T PRK07394 77 SPSNQRPPIVFGMPYDGRSRTAPIYPL-TALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFE 155 (342)
T ss_pred CCCCCCceeEEeCCCCCCCCCcccHHH-HHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 432 24689999999996 89999999 99999999999999999999999996669999999999998 9999999999
Q ss_pred hcCCcEEEEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhc-cCCceEEEeccCCcchHHHHHHHHHcCCCEEEE
Q 009818 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA-QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV 445 (524)
Q Consensus 367 e~~~GfaFLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNP-aga~~qViGVfh~~~~~~~A~al~~lG~~~alV 445 (524)
+ .||+|||||.|||+|++++++|++||+||++|+.+++ +|| +++++||+||||++|.++|+++++.+|.++++|
T Consensus 156 ~--~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL---~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~v 230 (342)
T PRK07394 156 Q--TGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELI---WTPHQGDHHLVSGFVHPPTEARAWEALELRGETNFTT 230 (342)
T ss_pred H--cCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCeEEE
Confidence 9 9999999999999999999999999999999999997 999 688999999999999999999999999999999
Q ss_pred EEcCCCceeecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCCCCCC
Q 009818 446 VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPRADR 516 (524)
Q Consensus 446 V~G~eG~DEiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~~~~~ 516 (524)
|||.||+||++++++ |.+.++ +++ ++++|+|+|+|||++.++++..|.
T Consensus 231 v~G~~G~dE~s~~~~--t~v~~~-----------------~~g----~i~~~~i~p~d~G~~~~~l~~~~~ 278 (342)
T PRK07394 231 VKGLEGSCDLPISRT--AIIGRV-----------------QNG----HFERLILHPRDYGCGGKDVPWEST 278 (342)
T ss_pred EEcCCCceeccCCCC--eEEEEE-----------------cCC----eEEEEEECHHHcCCCcccCCCCCH
Confidence 999999999999877 445544 334 589999999999999988865553
No 5
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=1.2e-69 Score=559.77 Aligned_cols=259 Identities=19% Similarity=0.250 Sum_probs=244.0
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCC
Q 009818 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADV 293 (524)
Q Consensus 214 ~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~~ 293 (524)
.|+++|+++.+|++||+|||+++|+.|| +| ++|+|+||||++||+||||+|||+||++||++++.+++.. .
T Consensus 3 ~~~~~l~~l~~g~~Lt~eEa~~~~~~il-------~~-~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~-~ 73 (343)
T PLN02641 3 SFRQLIESLIQGTDLTEEEAEAALDFLL-------DD-ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGL-V 73 (343)
T ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-C
Confidence 3789999999999999999999999999 77 9999999999999999999999999999999999877632 3
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEE
Q 009818 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 373 (524)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~Gfa 373 (524)
..+|||||||||++|||+||+ +|+|+|++|++|+|||||++||++|| +||||+|||+++++++++.++|++ .||+
T Consensus 74 ~~~D~~gtGGdg~~t~nist~-aa~v~A~~G~~V~kHGnr~~ss~~Gs--aDvLeaLGi~~~~~~~~~~~~l~~--~g~~ 148 (343)
T PLN02641 74 DAVDIVGTGGDGANTVNISTG-SSILAAACGAKVAKQGNRSSSSACGS--ADVLEALGVAIDLGPEGVKRCVEE--VGIG 148 (343)
T ss_pred CCCceeCCCCCCCCccccHHH-HHHHHHhCCCeEEEeCCCCCCCccCH--HHHHHHcCCCCCCCHHHHHHHHHh--cCcE
Confidence 479999999999999999999 99999999999999999999999999 999999999999999999999999 9999
Q ss_pred EEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCce
Q 009818 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGAL 453 (524)
Q Consensus 374 FLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~D 453 (524)
|||||.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++++|.++++|||| +|+|
T Consensus 149 fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL---~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G-~G~D 224 (343)
T PLN02641 149 FMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPM---LNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHS-EGLD 224 (343)
T ss_pred EEechhhCHHHHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEec-CCCC
Confidence 999999999999999999999999999999997 999999999999999999999999999999999999999 7999
Q ss_pred eecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCCC
Q 009818 454 SMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPR 513 (524)
Q Consensus 454 EiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~~ 513 (524)
|+|+.++ |.+.++ .++ ++++|+|+|+||||+.+++..
T Consensus 225 Eis~~g~--t~v~~~-----------------~~g----~i~~~~~~p~d~Gl~~~~~~~ 261 (343)
T PLN02641 225 EMSPLGP--GDVLEV-----------------TPE----KIEEFSFDPLDFGIPRCTLED 261 (343)
T ss_pred ccccCcc--eEEEEE-----------------eCC----ceEEEEeCHHHcCCCcCCHHh
Confidence 9999998 556555 444 489999999999999877753
No 6
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=6.3e-69 Score=549.27 Aligned_cols=257 Identities=18% Similarity=0.230 Sum_probs=241.2
Q ss_pred CcHHHHHHHHhcC----CCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009818 213 MRLVGALREVLAG----GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (524)
Q Consensus 213 m~l~~~L~kL~~G----~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~ 288 (524)
|+|+++|++|.+| ++||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.++
T Consensus 1 ~~~~~~i~~l~~G~~~~~~Lt~eEA~~~~~~il-------~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~ 73 (317)
T PRK08136 1 MDYAKIIKEIGRGKNGARDLDRDTARALYGAML-------DGRVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPL 73 (317)
T ss_pred CCHHHHHHHHHCCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcC
Confidence 6789999999999 8999999999999999 9999999999999999999999999999999999999887
Q ss_pred CCCC-C-CCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHH
Q 009818 289 PVAD-V-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLE 366 (524)
Q Consensus 289 ~~~~-~-~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Le 366 (524)
+.+. . ..+||||||||++ |||+||+ +|+|+|++|+||+|||||++|||+|| +||||+|||+++++|++++++|+
T Consensus 74 ~~~~~~~~~iD~~gtgGd~~-t~nist~-aA~vlA~~G~~V~kHGnr~vssk~gs--advleaLGi~~~~~~~~~~~~l~ 149 (317)
T PRK08136 74 TPPAGRPMPVVIPSYNGARK-QANLTPL-LALLLAREGVPVLVHGVSEDPTRVTS--AEIFEALGIPPTLHADQAQAKLA 149 (317)
T ss_pred CCCCCCCceEEeCCCCCCCC-CcChHHH-HHHHHHHCCCeEEEECCCCCCCcccH--HHHHHHcCCCCCCCHHHHHHHHH
Confidence 5432 1 3699999999976 9999999 99999999999999999999999999 99999999999999999999999
Q ss_pred hcCCcEEEEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhc--cCCceEEEeccCCcchHHHHHHHHHcCCCEEE
Q 009818 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGL 444 (524)
Q Consensus 367 e~~~GfaFLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNP--aga~~qViGVfh~~~~~~~A~al~~lG~~~al 444 (524)
+ .||+|||||.|||+|++++++|++||+||++|+.+++ +|| +++++||+||||++|.++|+++++++|. +++
T Consensus 150 ~--~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL---~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 150 E--GQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKL---ATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred h--cCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9 9999999999999999999999999999999999998 899 6899999999999999999999999998 999
Q ss_pred EEEcCCCceeecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCC
Q 009818 445 VVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTN 510 (524)
Q Consensus 445 VV~G~eG~DEiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~ 510 (524)
||||.||+||+|++++ |.+.++ +++ +++ |.++|+|||++..+
T Consensus 224 vv~G~~G~dE~s~~~~--t~v~~~-----------------~~g----~~~-~~~~p~~~g~~~~~ 265 (317)
T PRK08136 224 LMRGTEGEVYANPRRC--PQIDWI-----------------HDG----GCR-VLVERQSGSADEPP 265 (317)
T ss_pred EEEcCCCceeecCCCC--ceEEEE-----------------eCC----EEE-EEECHHHcCCccCc
Confidence 9999999999999988 556655 444 477 99999999998864
No 7
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3e-66 Score=533.03 Aligned_cols=261 Identities=21% Similarity=0.324 Sum_probs=246.7
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 009818 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (524)
Q Consensus 213 m~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~ 292 (524)
|+|+++|+++.+|++||++||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++.++
T Consensus 1 ~~~~~~i~~l~~g~~Lt~~Ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~ 73 (339)
T PRK00188 1 MTMKELLEKLVEGEDLSEEEAEELMDAIM-------SGEATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPD 73 (339)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC
Confidence 67899999999999999999999999999 99999999999999999999999999999999999998776543
Q ss_pred CCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcE
Q 009818 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (524)
Q Consensus 293 ~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~Gf 372 (524)
..+|+|||||||+++||+||+ +|+|+|++|++|+|||||+++||+|+ +|+||+||++++.+++++.++|++ .||
T Consensus 74 -~~iDi~gtggdg~~t~nis~~-~a~vlA~~G~~V~kHG~~~~~s~~Gs--advLe~lGi~~~~~~~~~~~~l~~--~g~ 147 (339)
T PRK00188 74 -DAVDIVGTGGDGANTFNISTA-AAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLSPEQVARCLEE--VGI 147 (339)
T ss_pred -CCCcccCCCCCCCCccchHHH-HHHHHHhCCCEEEEECCCCCCCCcCH--HHHHHHcCCCCCCCHHHHHHHHHH--cCc
Confidence 579999999999999999999 99999999999999999999999999 999999999999999999999999 999
Q ss_pred EEEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCc
Q 009818 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (524)
Q Consensus 373 aFLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~ 452 (524)
||+++|.|||+|++++++|++||+||++|+.+++ +||++++++|+||||++|.++|+++++.+|.++++||||.||+
T Consensus 148 ~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L---~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~~G~ 224 (339)
T PRK00188 148 GFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPL---TNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGSDGL 224 (339)
T ss_pred EEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 9999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCC
Q 009818 453 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTP 512 (524)
Q Consensus 453 DEiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~ 512 (524)
||++++++ +.+.++ .++ ++.+++|+|+|||++.++++
T Consensus 225 dE~~~~~~--t~v~~~-----------------~~g----~~~~~~i~p~~~Gl~~~~~~ 261 (339)
T PRK00188 225 DEISLTGP--TTVAEL-----------------KDG----EIREYTLTPEDFGLPRAPLE 261 (339)
T ss_pred eeecCCCC--EEEEEE-----------------cCC----EEEEEEECHHHcCCCcCCHH
Confidence 99999888 445544 334 47899999999999988753
No 8
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=5.9e-65 Score=521.24 Aligned_cols=255 Identities=25% Similarity=0.344 Sum_probs=237.8
Q ss_pred CcHHHHHHHHhcCC----CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009818 213 MRLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (524)
Q Consensus 213 m~l~~~L~kL~~G~----~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~ 288 (524)
|+|+++|+++++|+ +||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++|||+++.++
T Consensus 2 ~~~~~~ik~vg~gk~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~ 74 (323)
T PRK09071 2 HPFAEYIRILGKGKRGRRSLTREEARQAMGMIL-------DGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAP 74 (323)
T ss_pred CcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 67999999999998 999999999999999 9999999999999999999999999999999999999877
Q ss_pred CCCCCCCeeE-EcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCC-CCHHHHHHhCCCCCCCCHHHHHHHHH
Q 009818 289 PVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGG-VTEEQMLKFMGASTNLSVLQAKELLE 366 (524)
Q Consensus 289 ~~~~~~~vDi-~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksG-St~aDVLEaLGi~i~lspe~a~~~Le 366 (524)
+.+ ..+|| ||||+|+..++| |+ +|+|+|++|+||+|||||++|||+| | +||||+|||+++.+++++.++|+
T Consensus 75 ~~~--~~iD~~~gtG~d~~~~~~--~~-~a~vlA~~G~~V~kHGnr~~ssk~g~s--aDvLeaLGv~~~~~~~~~~~~l~ 147 (323)
T PRK09071 75 PLA--VDLDWPSYAGKRRHLPWY--LL-AAKLLAQNGYRVLLHGGGGHTAGRLYT--EQLLEALGIPIARSWQEAEQALE 147 (323)
T ss_pred CCC--CceecCCcCCCCCCcccH--HH-HHHHHHHCCCeEEEECCCCCCCCcccH--HHHHHHCCCCCCCCHHHHHHHHH
Confidence 533 35999 999999888887 56 9999999999999999999999996 8 99999999999999999999999
Q ss_pred hcCCcEEEEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEE
Q 009818 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVV 446 (524)
Q Consensus 367 e~~~GfaFLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV 446 (524)
+ .||+|||||.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++.+|.++++||
T Consensus 148 ~--~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv 222 (323)
T PRK09071 148 E--HNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARL---LNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVF 222 (323)
T ss_pred h--cCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHH---cCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEE
Confidence 9 9999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EcCCCceeecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCC
Q 009818 447 KGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNT 511 (524)
Q Consensus 447 ~G~eG~DEiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~ 511 (524)
||.||+||+|++++ |.+.++ +++ ++.+|+++| ||++..+.
T Consensus 223 ~G~~G~dE~s~~~~--t~v~~~-----------------~~g----~i~~~~~~~--~g~~~~~~ 262 (323)
T PRK09071 223 KGEGGESERNPDVS--TTLYGS-----------------RNG----EAWDEEWPA--LSEERHVK 262 (323)
T ss_pred ECCCCceeecCCCc--eEEEEE-----------------cCC----eEEEEEecc--cccccCCC
Confidence 99999999999988 556555 444 488999954 99987764
No 9
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=5.3e-65 Score=522.28 Aligned_cols=255 Identities=19% Similarity=0.288 Sum_probs=240.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCC-CCCCee
Q 009818 219 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA-DVKSLT 297 (524)
Q Consensus 219 L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~-~~~~vD 297 (524)
|+++.+|++||++||+++|+.|| +|+++|.|+||||++||+||||+|||+||++||++++.+++.+ ....+|
T Consensus 1 l~~~~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD 73 (330)
T TIGR01245 1 LEKLIDGKDLSRDEAEQLMKEIM-------SGEASPAQIAAILAALRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVD 73 (330)
T ss_pred CchhhcCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCccc
Confidence 36889999999999999999999 9999999999999999999999999999999999999887653 335799
Q ss_pred EEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEEEEcc
Q 009818 298 HYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL 377 (524)
Q Consensus 298 i~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~GfaFLfA 377 (524)
+|||||||++|||+||+ +|+|+|++|+||+|||||++||++|+ +|+||+||++++.+++++.++|++ .||||+++
T Consensus 74 ~~gtggdg~~t~nist~-~a~vlA~~G~~V~kHG~r~~~s~~Gs--~d~le~LGi~~~~s~~~~~~~l~~--~g~~f~~~ 148 (330)
T TIGR01245 74 IVGTGGDGANTINISTA-SAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLGPEKVARSLEE--TGIGFLFA 148 (330)
T ss_pred ccCCCCCCCCccccHHH-HHHHHHhCCCEEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeec
Confidence 99999999999999999 99999999999999999999999999 999999999999999999999999 99999999
Q ss_pred cccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCceeecC
Q 009818 378 REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTT 457 (524)
Q Consensus 378 p~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~DEiS~ 457 (524)
|.|||+|++++++|++||+||++|+.+++ +||++++++|+||||++|.++|+++++.+|.++++||||.||+||+|+
T Consensus 149 ~~~~P~~~~l~~lR~~lg~rT~~N~lgpL---~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~G~~G~dE~s~ 225 (330)
T TIGR01245 149 PLYHPAMKHVAPVRRELGVRTVFNLLGPL---TNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVHGDDGLDEISL 225 (330)
T ss_pred hhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEECCCCceeecC
Confidence 99999999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCC
Q 009818 458 RLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNT 511 (524)
Q Consensus 458 ~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~ 511 (524)
+++ |.+.++ .++ ++.+++|+|+|||++.+++
T Consensus 226 ~~~--t~v~~~-----------------~~g----~~~~~~i~p~~~g~~~~~~ 256 (330)
T TIGR01245 226 TGP--TTVAEL-----------------KDG----EIREYTLDPEDFGLPRAPL 256 (330)
T ss_pred CCc--EEEEEE-----------------ECC----EEEEEeCCHHHcCCCcCCH
Confidence 988 556554 344 4899999999999998764
No 10
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=8.8e-50 Score=394.21 Aligned_cols=189 Identities=24% Similarity=0.347 Sum_probs=171.5
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEE
Q 009818 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 373 (524)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~Gfa 373 (524)
.+||+|||||||.+||||||+ +|+|+|++|+||+|||||++|||+|+ +|+||+||+++++++++++++|++ .||+
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~-~a~vlAa~G~~V~kHG~r~~~~~~Gs--~dvLe~LGv~~~~~~~~~~~~l~~--~g~~ 76 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTA-AAIVLAAAGVPVAKHGNRGVTSKSGS--ADVLEALGVPIDLSPEEAQAQLEE--TGIA 76 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHH-HHHHHHHTTSEEEEEEESGCTTSSSH--HHHHHHSTB-TT--HHHHHHHHHH--HSEE
T ss_pred CceEEecCCCCCCCceehHHH-HHHHHHccCCcEecccCCCccccccH--HHHHHhcCCCcCCCHHHHHHHhhc--cCeE
Confidence 469999999999999999999 99999999999999999999999999 999999999999999999999999 9999
Q ss_pred EEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCce
Q 009818 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGAL 453 (524)
Q Consensus 374 FLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~D 453 (524)
||++|.|||+|++++++|++||+||++|+.+++ +||+++++||+||||++|.++|+++++.+|+++++|||| ||+|
T Consensus 77 fl~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL---~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G-~G~d 152 (252)
T PF00591_consen 77 FLFAPNFHPALKRLAPVRRELGIRTVFNTLGPL---LNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKG-EGSD 152 (252)
T ss_dssp EEEHHHHSGGHHHHHHHHHHHTS--SHHHHGHH---HHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEE-TTBS
T ss_pred EecchhcCcchHHHHHHHHHcCCCCHHHhhhhh---cCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEec-CCcc
Confidence 999999999999999999999999999999998 899999999999999999999999999999999999999 9999
Q ss_pred eecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCCCC
Q 009818 454 SMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPRA 514 (524)
Q Consensus 454 EiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~~~ 514 (524)
|+++.++ +.+..+ + ++ ++.+++|+|+||||+..+.+.+
T Consensus 153 E~~~~~~--t~v~~~-----------------~-~g---~~~~~~l~p~d~gl~~~~~~~l 190 (252)
T PF00591_consen 153 EISPLGP--TRVYEL-----------------K-NG---EITEYELDPEDFGLKRAPLEEL 190 (252)
T ss_dssp SHHHSSH--EEEEEH-----------------H-TT---EEEEEEEEEGCCTSSSEEGGGG
T ss_pred hhhhccC--cEEEee-----------------c-CC---ceeEEecCHhhcCCCCCChHHh
Confidence 9999888 446544 4 33 5899999999999998877655
No 11
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-47 Score=377.71 Aligned_cols=260 Identities=16% Similarity=0.171 Sum_probs=214.0
Q ss_pred CCCCHHHHHHHHHHhccCccCCCCC--CCCHHHH--HHHHHHHHhcC--CCHHHHHHHHHHHHhhC----CCCCC-----
Q 009818 226 GHLGYEEVQGVLRDVLPLQVDNKAP--GVSESLL--SAFLIGQRMNR--ETDRELKAYCLAFDDEL----GPPPV----- 290 (524)
Q Consensus 226 ~~Ls~eEA~~a~~~IL~~~~~~~~G--~~s~~Qi--gAFLiaLR~KG--ET~eELaG~a~Amre~~----~~~~~----- 290 (524)
++|+...-..+++.+.+.++++..+ +..+..+ ..||++||.-. +..|-|.-+++|+..+. .+++.
T Consensus 18 ~~L~~~g~~~ale~~~~al~~~~t~s~ks~~~~t~~~sfl~~L~~Tkae~~~e~l~ea~~al~s~s~~~~~pla~~~m~h 97 (373)
T KOG1438|consen 18 QNLGLSGGFSALEALPPALANASTSSIKSFNQLTETLSFLVDLSETKAESSLEFLLEANEALISASLVLLVPLARAMMKH 97 (373)
T ss_pred cccCccCcccHHHHhHHHHHhcCcCccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhccccchhhhhC
Confidence 4555444444444444444444455 4455444 99999999765 45666788889988877 33321
Q ss_pred C-C-CCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCC-CCCCHHHHHHHHHh
Q 009818 291 A-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAS-TNLSVLQAKELLED 367 (524)
Q Consensus 291 ~-~-~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~-i~lspe~a~~~Lee 367 (524)
+ + ...||||||||||.||||+||. +|+|+|+||.+|.||||++.+|.||+ +|+|++||++ +++.|+.+.+|.++
T Consensus 98 pr~~~~~vDIVGTGGDG~NTfNvST~-saIvAag~GlkvcKhGnkaStSasGs--aDll~~lGCd~l~v~p~~i~~~~e~ 174 (373)
T KOG1438|consen 98 PRKVEDAVDIVGTGGDGANTFNVSTG-SAIVAAGCGLKVCKHGNKASTSASGS--ADLLEALGCDVLDVGPEGIKRCVEE 174 (373)
T ss_pred cccCCceeEEeccCCCCcceeeecch-HHHHHhcccchhhhcCCccccccCcc--HHHHHhcCceeeccCCccccccccc
Confidence 1 1 2379999999999999999999 99999999999999999999999999 9999999988 58999999999999
Q ss_pred cCCcEEEEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEE
Q 009818 368 EEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVK 447 (524)
Q Consensus 368 ~~~GfaFLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~ 447 (524)
.+|+||++|.|||+|+++.|+||.||++|-+|-..++ +||++..+.|+||||+++..+||++++++|..+.++|+
T Consensus 175 --~~f~Fl~aPm~Hp~mk~V~piRK~LgipTvFNilGPl---LnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~ 249 (373)
T KOG1438|consen 175 --GGFGFLMAPMYHPAMKIVGPIRKKLGIPTVFNILGPL---LNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVV 249 (373)
T ss_pred --CceeEEechhhcccccchhHHHHhcCCccHHHhcccc---cCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999999999999999999999977777665 77777799999999999999999999999999899999
Q ss_pred cCCCceeecCCCcccceEeecccccccCcccccccccccCCCceecEEEEEEecCCCCCCCCCCCCC
Q 009818 448 GEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPRA 514 (524)
Q Consensus 448 G~eG~DEiS~~~~~~t~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~l~P~dfGl~~~~~~~~ 514 (524)
|+.|+||+||-|++. ++-+ ..+. -.+++|+++|.||||+++++..+
T Consensus 250 g~~GLDE~SP~G~t~--vw~v-----------------~~se--~k~e~f~~~P~~Fgl~~h~Ls~~ 295 (373)
T KOG1438|consen 250 GSCGLDEMSPLGGTL--VWDV-----------------TPSE--EKIEEFSFDPLDFGLPRHTLSDL 295 (373)
T ss_pred eccCccccCCCCCce--EEEe-----------------cCCc--eeeeeeecCHhhcCCCcCchhhh
Confidence 999999999999954 4322 1110 03789999999999999998543
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=1.7e-44 Score=381.63 Aligned_cols=207 Identities=19% Similarity=0.204 Sum_probs=192.8
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 009818 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (524)
Q Consensus 213 m~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~ 292 (524)
|+|+++|+++..|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||++...+++++.
T Consensus 1 m~~~~iI~k~~~g~~Lt~eE~~~~~~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~sg~~~~~~~ 73 (434)
T PRK06078 1 MRMVDLIQKKRDGKELTTEEINFFIEGYT-------NGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNSGDTIDLSA 73 (434)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcc
Confidence 56899999999999999999999999999 99999999999999999999999999999999999999987652
Q ss_pred --CCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 009818 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (524)
Q Consensus 293 --~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaL-Gi~i~lspe~a~~~Lee~~ 369 (524)
...+|+|||||||.+|||+ +|+|+|+||++|+|||||+++|++|+ +|+||+| |++++++++++.++|++
T Consensus 74 ~~~~~vD~~gTGGdG~kt~ni----~a~ivAA~Gv~VaKhgnR~lss~~GT--aD~LE~lpG~~~~ls~e~~~~~l~~-- 145 (434)
T PRK06078 74 IEGIKVDKHSTGGVGDTTTLV----LAPLVAAFGVPVAKMSGRGLGHTGGT--IDKLESIKGFHVEISQEDFIKLVNE-- 145 (434)
T ss_pred cCCCeeEecCCCCCCCCchHH----HHHHHHcCCCCeeeeCCCCcCCCcch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 2379999999999999993 78899999999999999999999999 9999999 99999999999999999
Q ss_pred CcEEEEc-ccccChhhhhHHhhhcccCCCCccccchhhhhhhhc--------cCCceEEEecc--------CCcchHHHH
Q 009818 370 IGFAYVS-LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGFY--------HEGYEEPLL 432 (524)
Q Consensus 370 ~GfaFLf-Ap~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNP--------aga~~qViGVf--------h~~~~~~~A 432 (524)
.||+|+| +|.|||+|+++.++|++++. ++.. ++ +|| ++++++|+||+ +++..+.+|
T Consensus 146 ~G~~fl~~a~~~~PAdk~v~~lR~v~~t---~n~l-PL---i~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a~~lA 218 (434)
T PRK06078 146 NKVAVIGQSGNLTPADKKLYALRDVTAT---VNSI-PL---IASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDAEELA 218 (434)
T ss_pred hCcEEEccCCCcChhhhhhHHHhccccc---cChH-Hh---hhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHH
Confidence 9999999 59999999999999999994 4444 43 777 88999999999 999999999
Q ss_pred HHHHHcCCC
Q 009818 433 MLMKRRGVH 441 (524)
Q Consensus 433 ~al~~lG~~ 441 (524)
++|..+|.+
T Consensus 219 ~~l~~lG~~ 227 (434)
T PRK06078 219 HAMVRIGNN 227 (434)
T ss_pred HHHHHHHHh
Confidence 999998853
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=1.2e-42 Score=364.97 Aligned_cols=224 Identities=19% Similarity=0.170 Sum_probs=201.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCC--C
Q 009818 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD--V 293 (524)
Q Consensus 216 ~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~--~ 293 (524)
.++|+++..|++||+||++++|+.|+ +|+++|.|++||||++|+||||+||++||++||+++..+++++. .
T Consensus 2 ~~~i~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~ 74 (405)
T TIGR02644 2 VDIIRKKRDGKKLSDEEINFFINGYT-------NGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSLPG 74 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccCC
Confidence 46899999999999999999999999 99999999999999999999999999999999999998887653 3
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCC-CCCCCCHHHHHHHHHhcCCcE
Q 009818 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDEEIGF 372 (524)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLG-i~i~lspe~a~~~Lee~~~Gf 372 (524)
..+|+|||||||. |+||+ +|+|+|++|++|+|||||+++|++|+ +|+||+|| ++++++++++.+++++ +||
T Consensus 75 ~~vD~~gTGGdG~---~iSt~-~a~ivAa~Gv~VaKhgnR~lss~~GT--aD~LE~lgG~~v~ls~e~~~~~l~~--~G~ 146 (405)
T TIGR02644 75 PKVDKHSTGGVGD---KVSLV-LGPIVAACGVKVAKMSGRGLGHTGGT--IDKLESIPGFRTELSEAEFIEIVNK--VGL 146 (405)
T ss_pred CeeEEeCCCCCCC---CchHH-HHHHHHhCCCCEEeeCCCCCCCcchH--HHHHHhcCCCCCCCCHHHHHHHHHH--cCe
Confidence 4899999999998 48999 99999999999999999999999999 99999998 9999999999999999 999
Q ss_pred EEEccc-ccChhhhhHHhhhcccC-CCC-ccccchhhhhhhhccCCceEEEec--------cCCcchHHHHHHHHHcCCC
Q 009818 373 AYVSLR-EARPSLYSLIGLREHIK-KRP-PVATSEKVQQFVRAQGREAIVAGF--------YHEGYEEPLLMLMKRRGVH 441 (524)
Q Consensus 373 aFLfAp-~~hPam~~l~pvRk~LG-iRT-PL~npak~~~~lNPaga~~qViGV--------fh~~~~~~~A~al~~lG~~ 441 (524)
||++++ .+||+++.+.++|++++ +-+ ||.++..+.+.+ ..|++++|++| ++.+..+.+|+.|..+|.+
T Consensus 147 ~fl~~~~~l~PAdk~l~~lRd~~~Tv~sipLi~aSimSKK~-A~G~~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~~ 225 (405)
T TIGR02644 147 AIIGQTKDLAPADKKLYALRDVTGTVDSIPLIASSIMSKKL-AAGADAIVLDVKVGSGAFMKTLEDAKELAKLMVEIGKG 225 (405)
T ss_pred EEecCccccCcchhHHHHHhhcccccCcHHHHHHHHHHHHH-hcCCCeEEEeecccCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999 222 888887764433 46689999999 9999999999999998876
Q ss_pred EEE--EEEcCCCceeec
Q 009818 442 SGL--VVKGEEGALSMT 456 (524)
Q Consensus 442 ~al--VV~G~eG~DEiS 456 (524)
..+ ++.. .++||+-
T Consensus 226 ~g~~~~a~~-t~md~pl 241 (405)
T TIGR02644 226 AGRKTSALL-TDMNQPL 241 (405)
T ss_pred cCCeEEEEe-cCCCccc
Confidence 554 4444 4577754
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=7.6e-41 Score=357.44 Aligned_cols=210 Identities=20% Similarity=0.218 Sum_probs=192.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Q 009818 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 295 (524)
Q Consensus 216 ~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~~~~ 295 (524)
.++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||+++..+++++....
T Consensus 82 ~~~I~kk~~G~~Ls~eE~~~~i~~i~-------~g~~sd~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~~g~~l~~~~~~~ 154 (490)
T PRK04350 82 LSAIRKKIDGEKLDKEEIEAIIRDIV-------AGRYSDIELSAFLTASAINGLDMDEIEALTRAMVETGERLDWDRPPV 154 (490)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCCCCCe
Confidence 47899999999999999999999999 99999999999999999999999999999999999999987754458
Q ss_pred eeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEEEE
Q 009818 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 375 (524)
Q Consensus 296 vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~GfaFL 375 (524)
+|+|||||||.+++ |+. +++++|+||++|+|||||++||++|+ +|+||+|| +++++++++.+++++ .||||+
T Consensus 155 vDkhgTGGd~g~t~--S~~-~apivAA~Gv~VaKhgnRaiss~sGT--aD~LEaLg-~v~ls~e~~~~~l~~--~G~~fl 226 (490)
T PRK04350 155 VDKHSIGGVPGNRT--TLI-VVPIVAAAGLTIPKTSSRAITSPAGT--ADTMEVLA-PVDLSVEEIKRVVEK--VGGCLV 226 (490)
T ss_pred EEecCCCCCCCCCE--eHH-HHHHHHhCCCceeeecCCCCCCCCch--HHHHHHhh-cCCCCHHHHHHHHHH--cCEEEE
Confidence 99999999988886 566 66677999999999999999999999 99999999 999999999999999 999999
Q ss_pred c--ccccChhhhhHHhhhcccCCCCccccchhhhhhhh--------------ccCCceEEEeccCCcchHHHHHHHHHcC
Q 009818 376 S--LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVR--------------AQGREAIVAGFYHEGYEEPLLMLMKRRG 439 (524)
Q Consensus 376 f--Ap~~hPam~~l~pvRk~LGiRTPL~npak~~~~lN--------------Paga~~qViGVfh~~~~~~~A~al~~lG 439 (524)
| +|.|||+|+++.++|+.|+++|..+-.+.+ +| |.|+.++ |++.+..+.+++.|..+|
T Consensus 227 fG~a~~l~PAdk~l~~vR~~l~vds~~li~aSI---mSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA~~~~~vg 300 (490)
T PRK04350 227 WGGAVNLSPADDILIRVERPLSIDPRGQLVASI---LSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLARLFEEVG 300 (490)
T ss_pred ECCccccCHHHHHHHHHhhhcCCCcHHHHHHHH---hhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999966666666 67 7777777 799999999999999888
Q ss_pred CCEEEEE
Q 009818 440 VHSGLVV 446 (524)
Q Consensus 440 ~~~alVV 446 (524)
.+.++.+
T Consensus 301 ~~~g~~v 307 (490)
T PRK04350 301 DRLGLRV 307 (490)
T ss_pred HhcCCeE
Confidence 7655554
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=4.8e-38 Score=333.08 Aligned_cols=219 Identities=19% Similarity=0.214 Sum_probs=189.7
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCC-
Q 009818 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA- 291 (524)
Q Consensus 213 m~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~- 291 (524)
|+|+++|+++..|++||++|++++|+.|+ +|+++|.|++|||+++|+||||+||+++|++||+++..+++++
T Consensus 2 m~~~~~I~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i~~~~ 74 (440)
T PRK05820 2 FLAQEIIRKKRDGGALSDEEIDWFIDGYT-------DGTVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVLDWSS 74 (440)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 67899999999999999999999999999 9999999999999999999999999999999999999988654
Q ss_pred ---CCCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhC-CCCCCCCHHHHHHHHHh
Q 009818 292 ---DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 367 (524)
Q Consensus 292 ---~~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaL-Gi~i~lspe~a~~~Lee 367 (524)
+...+|+|||||||. |+||+ +|+++|++|++|+|||||+++|++|+ +|+||+| |++++++++++.++|++
T Consensus 75 ~d~~~~~vDkhgTGGdG~---niS~~-~a~ivAa~Gv~VaKhg~R~lss~~GT--aD~LE~LpG~~v~ls~e~~~~~l~~ 148 (440)
T PRK05820 75 LNLNGPIVDKHSTGGVGD---KISLM-LAPMVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYRAFPSNDRFREILKD 148 (440)
T ss_pred ccCCCCeEEEcCCCCCCc---cHHHH-HHHHHHhCCCCEEeeCCCCCCCcccH--HHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 234799999999998 89999 99999999999999999999999999 9999999 99999999999999999
Q ss_pred cCCcEEEEccc-ccChhhhhHHhhhcccCC-CC-ccccchhhhhhhhccCCceEEEeccC------------CcchHHHH
Q 009818 368 EEIGFAYVSLR-EARPSLYSLIGLREHIKK-RP-PVATSEKVQQFVRAQGREAIVAGFYH------------EGYEEPLL 432 (524)
Q Consensus 368 ~~~GfaFLfAp-~~hPam~~l~pvRk~LGi-RT-PL~npak~~~~lNPaga~~qViGVfh------------~~~~~~~A 432 (524)
.||+|++++ .|||+|+++.++|+..+. .+ ||....-+.+.+ ..|+++.|+-|-. ..+...|.
T Consensus 149 --~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~aSImSKK~-A~G~~~lvlDVk~G~gAfmkt~~~A~~La~~mv 225 (440)
T PRK05820 149 --VGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITASILSKKL-AEGLDALVLDVKVGSGAFMKTYEEARELARSMV 225 (440)
T ss_pred --cCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHHHHHHHHH-HcCCCeEEEEcCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999999 999999999999988754 33 776665543323 4567888887642 23455666
Q ss_pred HHHHHcCCCEEEEEE
Q 009818 433 MLMKRRGVHSGLVVK 447 (524)
Q Consensus 433 ~al~~lG~~~alVV~ 447 (524)
++-+.+|.+...++.
T Consensus 226 ~ig~~~g~~~~a~lT 240 (440)
T PRK05820 226 EVANGAGVRTTALLT 240 (440)
T ss_pred HHHHHcCCeEEEEEc
Confidence 666777876444443
No 16
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=1.1e-36 Score=325.47 Aligned_cols=215 Identities=17% Similarity=0.195 Sum_probs=186.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Q 009818 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 295 (524)
Q Consensus 216 ~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~~~~ 295 (524)
.++|+|+.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||+++..+++++....
T Consensus 87 ~~~I~kk~~G~~Lt~eE~~~ii~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~sg~~l~~~~~~~ 159 (493)
T TIGR02645 87 LRAIRKKIDGAKLDQHEIASIVGDIV-------DERLSDVEISAFLTASAINGMTMDEIEALTIAMADTGEMLEWDREPI 159 (493)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCccCCCCCe
Confidence 56899999999999999999999999 99999999999999999999999999999999999999987754457
Q ss_pred eeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEEEE
Q 009818 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 375 (524)
Q Consensus 296 vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~GfaFL 375 (524)
+|+||||||+.++||++ +++++|+||++|+|||||++||++|+ +|+||+|| +++++++++++++++ .|+||+
T Consensus 160 vDkhgTGGd~gnk~ni~---~apIvAA~Gv~VaKhsnRaits~sGT--AD~LE~Lg-~v~ls~e~~~~~ve~--~G~~fl 231 (493)
T TIGR02645 160 MDKHSIGGVPGNKTSLI---VVPIVAAAGLLIPKTSSRAITSAAGT--ADTMEVLT-RVALSAEEIKRIVEK--VGGCLV 231 (493)
T ss_pred EEEeCCCCCCCCCEeHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHHhc-CCCCCHHHHHHHHHH--CCEEEE
Confidence 99999999999999884 45566999999999999999999999 99999999 999999999999999 999999
Q ss_pred c--ccccChhhhhHHhhhcccCCCC-ccccchhhhhhhhccCCceEEEecc------C------CcchHHHHHHHHHcCC
Q 009818 376 S--LREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVAGFY------H------EGYEEPLLMLMKRRGV 440 (524)
Q Consensus 376 f--Ap~~hPam~~l~pvRk~LGiRT-PL~npak~~~~lNPaga~~qViGVf------h------~~~~~~~A~al~~lG~ 440 (524)
| ++.|||+++++.++|+.|++.+ ||..-.-+.+.+ ..|+++.|+-|- = ..+...|.++-+.+|.
T Consensus 232 ~G~a~~l~PAdk~i~~vR~~l~vds~~li~aSImSKKl-A~G~~~lvlDvk~G~gAf~~~~~~A~~La~~~~~vg~~~G~ 310 (493)
T TIGR02645 232 WGGALNLAPADDVLIRVERPLSIDPRAQMLASIMSKKI-AAGSTHVLIDIPVGPGAKVRSLQEAERLARLFIELGDRLGV 310 (493)
T ss_pred ECCCcccCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-hcCCCeEEEeccccCCCcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9 9999999999999999999999 776665543333 577889998763 1 2344555566666776
Q ss_pred CEEEEE
Q 009818 441 HSGLVV 446 (524)
Q Consensus 441 ~~alVV 446 (524)
+-..++
T Consensus 311 ~~~a~i 316 (493)
T TIGR02645 311 RVECAI 316 (493)
T ss_pred eEEEEE
Confidence 533333
No 17
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=4.9e-36 Score=316.97 Aligned_cols=217 Identities=17% Similarity=0.203 Sum_probs=187.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCC--C
Q 009818 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA--D 292 (524)
Q Consensus 215 l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~--~ 292 (524)
+.++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||+++..+++++ .
T Consensus 3 ~~~~I~kk~~G~~Lt~eE~~~~i~~i~-------~g~i~d~QiaAfLmAl~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~ 75 (437)
T TIGR02643 3 PQEIIRKKRDGHSLSDAEIAQFINGIT-------DGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRDSGDVLDWRSLD 75 (437)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccc
Confidence 468999999999999999999999999 9999999999999999999999999999999999999988765 1
Q ss_pred --CCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 009818 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (524)
Q Consensus 293 --~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaL-Gi~i~lspe~a~~~Lee~~ 369 (524)
...+|+|||||||. |+||+ +|+++|+||++|+|||||+++|++|+ +|+||+| |++++++++++.+++++
T Consensus 76 ~~~~~vDkhgTGGdG~---niSt~-~apivAA~Gv~VaKhgnR~iss~~GT--aD~LEalpG~~v~ls~e~~~~~l~~-- 147 (437)
T TIGR02643 76 LNGPVVDKHSTGGVGD---VVSLM-LGPIVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYDIFPDPALFRRVVKD-- 147 (437)
T ss_pred cCCCeeEecCCCCCCc---chhHH-HHHHHHhCCCCeeeecCCCcCCCCch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 34799999999998 89999 99999999999999999999999999 9999999 99999999999999999
Q ss_pred CcEEEEc-ccccChhhhhHHhhhc-ccCCCC-ccccchhhhhhhhccCCceEEEecc------CC------cchHHHHHH
Q 009818 370 IGFAYVS-LREARPSLYSLIGLRE-HIKKRP-PVATSEKVQQFVRAQGREAIVAGFY------HE------GYEEPLLML 434 (524)
Q Consensus 370 ~GfaFLf-Ap~~hPam~~l~pvRk-~LGiRT-PL~npak~~~~lNPaga~~qViGVf------h~------~~~~~~A~a 434 (524)
.||+|+. ++.+||+++.+.++|. ..-+.+ ||....-+.+.+ ..++++.|+-|- =+ .+...|.++
T Consensus 148 ~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~pLi~aSImSKKl-A~g~d~ivlDVk~G~gAfmk~~~~A~~LA~~mv~i 226 (437)
T TIGR02643 148 VGVAIIGQTADLAPADKRFYATRDVTATVESIPLITASILSKKL-AAGLDALVMDVKVGNGAFMPTYEESEELARSLVDV 226 (437)
T ss_pred cCceEEccCCCcCcchhceeeeeeecCCCCcHHHHHHHHHHHHH-HcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHH
Confidence 9999998 9999999999999995 445555 777776554433 567889998663 22 344455556
Q ss_pred HHHcCCCEEEEEE
Q 009818 435 MKRRGVHSGLVVK 447 (524)
Q Consensus 435 l~~lG~~~alVV~ 447 (524)
-+.+|.+-..++.
T Consensus 227 g~~~g~~~~a~iT 239 (437)
T TIGR02643 227 ANGAGVRTTALIT 239 (437)
T ss_pred HHHcCCeEEEEEC
Confidence 6667765444443
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=2.9e-35 Score=314.77 Aligned_cols=217 Identities=13% Similarity=0.158 Sum_probs=187.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Q 009818 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVK 294 (524)
Q Consensus 215 l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~~~ 294 (524)
-.++|+|+..|++||++|++++|+.|+ +|+++|.|++|||+|+++||+|.+|++++++||+++..+++++...
T Consensus 87 s~~~I~kk~~G~~Ls~eEi~~ii~~i~-------~g~~~d~QiaAfL~Al~~kG~t~~Eia~lt~AM~~sg~~l~~~~~~ 159 (500)
T TIGR03327 87 SVEYIKKKMDGEKLTKDEIRAIVADIV-------DDKLSDIEISAFVTASYINGMDMDEIEWLTRAMAETGDMLSFDRHP 159 (500)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcccCCCCC
Confidence 458999999999999999999999999 9999999999999999999999999999999999999988776445
Q ss_pred CeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCCCHHHHHHHHHhcCCcEEE
Q 009818 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374 (524)
Q Consensus 295 ~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~lspe~a~~~Lee~~~GfaF 374 (524)
.+|+|||||||.++||++ +++++|+||++|+|||||+++|++|+ +|+||+|+ +++++++++.+++++ .|+||
T Consensus 160 vvDkhgTGGd~gnk~nl~---~apIVAA~Gv~VaKhsnRaits~sGT--aD~LEsL~-~v~ls~e~~~~~v~~--~G~~f 231 (500)
T TIGR03327 160 IMDKHSIGGVPGNKISLL---VVPIVAAAGLTIPKTSSRAITSAAGT--ADVMEVLA-PVEFSADEIKRIVEK--TGGCL 231 (500)
T ss_pred eEEEeCCCCCCCCCEEHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHHhh-CCCCCHHHHHHHHHH--CCEEE
Confidence 899999999999999884 45555889999999999999999999 99999995 999999999999999 99999
Q ss_pred Ec--ccccChhhhhHHhhhcccCCCC-ccccchhhhhhhhccCCceEEEecc------C------CcchHHHHHHHHHcC
Q 009818 375 VS--LREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVAGFY------H------EGYEEPLLMLMKRRG 439 (524)
Q Consensus 375 Lf--Ap~~hPam~~l~pvRk~LGiRT-PL~npak~~~~lNPaga~~qViGVf------h------~~~~~~~A~al~~lG 439 (524)
+| +++|||+++++..+|+.+.+.+ ||..-.-+.+.+ .+|+++.|+-|- = ..+...|.++-+.+|
T Consensus 232 l~Gqa~~l~PAdk~l~alrdt~tvds~~li~aSImSKKl-A~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~mv~vg~~~G 310 (500)
T TIGR03327 232 VWGGATNLAPADDKIIKVERPLSIDPRGQMLASVMAKKG-AIGADHVVIDIPVGKGAKVKTVEEGRKLARDFIELGDRLG 310 (500)
T ss_pred EECCccccCHHHHHHHHhccccCCCcHHHHHHHHHHHHH-HcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHHHHHcC
Confidence 99 9999999999999999888888 777765554333 577888888663 1 234455566666677
Q ss_pred CCEEEEEE
Q 009818 440 VHSGLVVK 447 (524)
Q Consensus 440 ~~~alVV~ 447 (524)
.+-..++.
T Consensus 311 ~~~~a~iT 318 (500)
T TIGR03327 311 MNVECAIT 318 (500)
T ss_pred CeEEEEEC
Confidence 65444443
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.78 E-value=3.1e-18 Score=179.71 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=185.1
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCC
Q 009818 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (524)
Q Consensus 213 m~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~ 292 (524)
|...++|+|..+|+.||.+|.+++++.+. +|.++|.|++||+||.-++|.|.+|++.+..||++.-..+++.+
T Consensus 2 ~~~v~iI~KKrdG~~L~~~EI~~~i~~~~-------~~~i~D~Q~sAf~mAi~f~gM~~~E~~~lT~AMv~SGe~ld~~~ 74 (435)
T COG0213 2 MRSVEIIRKKRDGKALSKEEIEFFINGYV-------NGTIPDYQISAFLMAIFFRGMTMDEIAALTMAMVDSGEVLDLSD 74 (435)
T ss_pred CchHHHHHHhcccccCCHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCEEeecc
Confidence 56789999999999999999999999999 99999999999999999999999999999999999887776653
Q ss_pred --CCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 009818 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (524)
Q Consensus 293 --~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaL-Gi~i~lspe~a~~~Lee~~ 369 (524)
...+|-..|||-|.++.-+ .+-++|+||++|.|-.+|+.++..|. .|.||.+ |++++++.++..+.+.+
T Consensus 75 ~~~~~vDKHStGGVgdk~sL~----l~PiVAA~Gl~VpK~SgRgLghtGGT--~DklEsi~g~~~~~~e~~fi~~~~~-- 146 (435)
T COG0213 75 IPGPVVDKHSTGGVGDKTSLI----LVPIVAAAGLPVPKMSGRGLGHTGGT--LDKLESIPGVNLELDEIKFIEQVKD-- 146 (435)
T ss_pred CCCceecccCCCCCCcccchh----HHHHHHhcCCcccccccCccccCccc--hhhhhccCCcccCcCHHHHHHHhhc--
Confidence 3579999999999665333 55599999999999999999999999 9999999 99999999999999999
Q ss_pred CcEEEEccc-ccChhhhhHHhhhcccC-CCC-ccccchhhhhhhhccCCceEEEecc------CC------cchHHHHHH
Q 009818 370 IGFAYVSLR-EARPSLYSLIGLREHIK-KRP-PVATSEKVQQFVRAQGREAIVAGFY------HE------GYEEPLLML 434 (524)
Q Consensus 370 ~GfaFLfAp-~~hPam~~l~pvRk~LG-iRT-PL~npak~~~~lNPaga~~qViGVf------h~------~~~~~~A~a 434 (524)
+|++...|. ..-|+-+.+..+|..++ +.+ ||..-.-+.+.+ .+|+++.|+-|- =+ ++...|.++
T Consensus 147 ~g~aiiGqs~~LaPADkklyalrdvtaTVdsipLiasSIMSKKl-A~G~~~ivlDVkvG~GAfmkt~~~a~~LA~~mv~i 225 (435)
T COG0213 147 NGVAIIGQSGNLAPADKKLYALRDVTATVDSIPLIASSIMSKKL-AAGADAIVLDVKVGSGAFMKTVEDARELAKAMVEI 225 (435)
T ss_pred CCeEEEeCcCCcCcccceeEEeeeccccCCcHHHHHHHHHHHHH-hccCCcEEEEecccCCCccCCHHHHHHHHHHHHHH
Confidence 999888888 99999999999999999 777 887776654433 567889998653 22 344455556
Q ss_pred HHHcCCCEEEEE
Q 009818 435 MKRRGVHSGLVV 446 (524)
Q Consensus 435 l~~lG~~~alVV 446 (524)
-+.+|.+-..++
T Consensus 226 g~~~g~~t~a~i 237 (435)
T COG0213 226 GKGLGRKTTAVI 237 (435)
T ss_pred HHhcCCeEEEEE
Confidence 666776433444
No 20
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=99.70 E-value=3.7e-17 Score=132.20 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=54.8
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009818 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (524)
Q Consensus 214 ~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~ 285 (524)
+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+++|+||||++||+|+++||++++
T Consensus 1 ~~~~~l~~l~~g~~Ls~~e~~~~~~~i~-------~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 1 MIKEILKKLRDGEDLSREEAKAAFDAIL-------DGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp -HHHHHHHHHTT----HHHHHHHHHHHH-------TTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999 9999999999999999999999999999999999986
No 21
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.68 E-value=3.3e-17 Score=157.55 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=92.5
Q ss_pred ccceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhH
Q 009818 97 QAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPL 175 (524)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~ 175 (524)
.-.|++||||++|. +|+++++. |+++.+++|++| |||||+||-+|||.+.|| +-|.||+.| ...+.|.+
T Consensus 46 pd~iviSPGPG~P~---d~G~~~~~-i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a-~~~~HGK~s-----~i~h~g~~ 115 (191)
T COG0512 46 PDAIVISPGPGTPK---DAGISLEL-IRRFAGRIPILGVCLGHQAIAEAFGGKVVRA-KEPMHGKTS-----IITHDGSG 115 (191)
T ss_pred CCEEEEcCCCCChH---HcchHHHH-HHHhcCCCCEEEECccHHHHHHHhCCEEEec-CCCcCCeee-----eeecCCcc
Confidence 45899999999999 99999999 899999999999 999999999999999999 899999999 77888877
Q ss_pred hh-------------------hhCCCceEEEe-C-CCCcccccCCCC----CCCCCCCCCc
Q 009818 176 LM-------------------RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDPR 211 (524)
Q Consensus 176 l~-------------------~~lp~~~~f~a-~-p~G~iMg~~~~~----g~~~~~~~~~ 211 (524)
+| .++|+++.++| + .+|.|||++|+. |++|.|.+-.
T Consensus 116 iF~glp~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESil 176 (191)
T COG0512 116 LFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESIL 176 (191)
T ss_pred cccCCCCCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCCEEEEecCCcccc
Confidence 77 35999999998 3 446999999999 6677665543
No 22
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.24 E-value=6e-12 Score=119.29 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=91.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhh---h
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFW---P 174 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~---~ 174 (524)
.+.++|+|++|. +.|||+|+ ++++.+++|..| |+|-|-|+-.||+++.+|.-=+.||+.| -+.+++ .
T Consensus 66 ~LliSPGPG~P~---DsGIs~~~-i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S-----~i~~D~~~~~ 136 (223)
T KOG0026|consen 66 GLLISPGPGTPQ---DSGISLQT-VLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSS-----MVHYDEKGEE 136 (223)
T ss_pred eEEecCCCCCCc---cccchHHH-HHHhCCCCceeeeehhhhhhhhhhCcEEeccCcceeecccc-----ccccCCcccc
Confidence 478999999999 99999999 899999999999 9999999999999999993246899999 889998 4
Q ss_pred Hhh-------------------hhCC-CceEEEe-CCCCcccccCCCC-----CCCCCCCCCcc
Q 009818 175 LLM-------------------RALP-PDVIFIA-DPEGSIMGGGGSI-----GPHYSGNDPRE 212 (524)
Q Consensus 175 ~l~-------------------~~lp-~~~~f~a-~p~G~iMg~~~~~-----g~~~~~~~~~~ 212 (524)
++| +.|| +++.++| ..+|-|||.||+- |++|.|.+-..
T Consensus 137 G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlt 200 (223)
T KOG0026|consen 137 GLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIIT 200 (223)
T ss_pred ccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhh
Confidence 466 5677 7888888 8999999999986 89997765433
No 23
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.08 E-value=6.4e-11 Score=136.09 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=57.6
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHH
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEG 164 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~ 164 (524)
-.|++||||++|...++++++++. |+++ ..+|++| |+|||.|+.+|||.+.|+ +.|+||+.++.
T Consensus 133 d~IVlSPGPG~P~~~~d~Gi~~~~-i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~-~~~~HG~~s~I 197 (918)
T PLN02889 133 DNIVISPGPGSPTCPADIGICLRL-LLEC-RDIPILGVCLGHQALGYVHGARIVHA-PEPVHGRLSEI 197 (918)
T ss_pred CEEEECCCCCCccchHHHHHHHHH-HHHh-CCCcEEEEcHHHHHHHHhcCceEEeC-CCceeeeeeeE
Confidence 369999999999999999999998 5555 4699999 999999999999999999 88999998843
No 24
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=98.94 E-value=5.4e-10 Score=106.77 Aligned_cols=103 Identities=21% Similarity=0.149 Sum_probs=81.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~ 177 (524)
.|++||||+.|. ++...++. ++.+..++|++| |+|||.|+.+|||.+.|. ..++|+++++- .+....++
T Consensus 46 ~iils~GPg~p~---~~~~~~~~-~~~~~~~~PiLGIClG~Q~la~a~Gg~v~~~-~~~~~g~~~~v-----~~~~~~l~ 115 (187)
T PRK08007 46 KIVISPGPCTPD---EAGISLDV-IRHYAGRLPILGVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPI-----THNGEGVF 115 (187)
T ss_pred EEEEcCCCCChH---HCCccHHH-HHHhcCCCCEEEECHHHHHHHHHcCCEEEeC-CCcccCCceEE-----EECCCCcc
Confidence 499999999997 45555555 777888999999 999999999999999998 77889987732 22111122
Q ss_pred -------------------hhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCCc
Q 009818 178 -------------------RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPR 211 (524)
Q Consensus 178 -------------------~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~~ 211 (524)
..+|+.+.++| +++|.|||++|+. |++|.|....
T Consensus 116 ~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~~~i~GvQfHPE~~~ 173 (187)
T PRK08007 116 RGLANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLEGVQFHPESIL 173 (187)
T ss_pred cCCCCCcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCCCCEEEEEeCCcccC
Confidence 26899999998 9999999999877 7788776533
No 25
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=98.67 E-value=1.3e-08 Score=98.15 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=79.0
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH---HHHHhhhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER---RAMNTFWP 174 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~---~~~~~~~~ 174 (524)
.|+++|||+.|. +.....+. ++.+.+++|.+| |+|||.|+.++||.+.|. ..++|+.|++-.. ..+..+..
T Consensus 46 ~iIlsgGP~~p~---~~~~~~~~-i~~~~~~~PvLGIClG~Qlla~~lGg~V~~~-~~~~~G~~~~i~~~~~~lf~~~~~ 120 (195)
T PRK07649 46 FLMISPGPCSPN---EAGISMEV-IRYFAGKIPIFGVCLGHQSIAQVFGGEVVRA-ERLMHGKTSLMHHDGKTIFSDIPN 120 (195)
T ss_pred EEEECCCCCChH---hCCCchHH-HHHhcCCCCEEEEcHHHHHHHHHcCCEEeeC-CCcccCCeEEEEECCChhhcCCCC
Confidence 499999999998 44444444 666778999999 999999999999999998 6688999863211 11111111
Q ss_pred --------Hhh---hhCCCceEEEe-CCCCcccccCCCC----CCCCCCCC
Q 009818 175 --------LLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (524)
Q Consensus 175 --------~l~---~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~ 209 (524)
.+. ..||+.+.++| +.+|.+||++|+. |++|.|..
T Consensus 121 ~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~~~i~gvQFHPE~ 171 (195)
T PRK07649 121 PFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKTLPIEGVQFHPES 171 (195)
T ss_pred CCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECCCCEEEEEECCCC
Confidence 010 25899999998 8899999999985 77887764
No 26
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.4e-08 Score=108.21 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=82.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~ 177 (524)
.|++||||++|...++.+||++. +.+|+ ++|++| |+|+|+||++.||.++-+ .-|-||+.| -|.+.+--+|
T Consensus 67 aIVVgPGPG~P~~a~d~gI~~rl-~~~~~-~iPilGICLGfQal~l~hGA~v~~~-n~p~HGrvs-----~i~~~~~~~f 138 (767)
T KOG1224|consen 67 AIVVGPGPGSPMCAADIGICLRL-LLECR-DIPILGICLGFQALGLVHGAHVVHA-NEPVHGRVS-----GIEHDGNILF 138 (767)
T ss_pred eEEecCCCCCCCcHHHHHHHHHH-HHhcC-CCceeeeehhhHhHhhhcccceecC-CCcccceee-----eEEecCcEEE
Confidence 59999999999999999999998 99999 999999 999999999999999999 669999999 7777776666
Q ss_pred hh---------------------CCCceEEEe----CCCC-cccccCCCC----CCCCCCCC
Q 009818 178 RA---------------------LPPDVIFIA----DPEG-SIMGGGGSI----GPHYSGND 209 (524)
Q Consensus 178 ~~---------------------lp~~~~f~a----~p~G-~iMg~~~~~----g~~~~~~~ 209 (524)
+- +|-|..-++ |.+| -+|++.|+. |++|.|.+
T Consensus 139 ~gi~sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES 200 (767)
T KOG1224|consen 139 SGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPES 200 (767)
T ss_pred ccCCCCCcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHH
Confidence 33 333333232 3333 579999998 66665443
No 27
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=98.46 E-value=1.1e-07 Score=91.09 Aligned_cols=108 Identities=22% Similarity=0.224 Sum_probs=78.7
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH---HHhh-hh
Q 009818 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA---MNTF-WP 174 (524)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~---~~~~-~~ 174 (524)
|+++|||+.|. ++....+. ++++..++|++| |+|||.++.+|||.+.+. .-++|++|++-..+. +.-+ .+
T Consensus 47 iilsgGpg~p~---~~~~~~~~-i~~~~~~~PvLGIC~G~Qll~~~~GG~v~~~-~~~~~g~~~~v~~~~~~~~~~l~~~ 121 (188)
T TIGR00566 47 IVISPGPCTPN---EAGISLEA-IRHFAGKLPILGVCLGHQAMGQAFGGDVVRA-NTVMHGKTSEIEHNGAGIFRGLFNP 121 (188)
T ss_pred EEEcCCCCChh---hcchhHHH-HHHhccCCCEEEECHHHHHHHHHcCCEEeeC-CCccccceEEEEECCCccccCCCCC
Confidence 99999999997 33344444 888888999999 999999999999999997 567799885322110 0000 11
Q ss_pred H--------hh--hhCCCceEEEe-CCC-CcccccCCCC----CCCCCCCCCcc
Q 009818 175 L--------LM--RALPPDVIFIA-DPE-GSIMGGGGSI----GPHYSGNDPRE 212 (524)
Q Consensus 175 ~--------l~--~~lp~~~~f~a-~p~-G~iMg~~~~~----g~~~~~~~~~~ 212 (524)
. .+ ..+|+.+.++| +.+ |.|||++|+. |++|.|.....
T Consensus 122 ~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t 175 (188)
T TIGR00566 122 LTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILS 175 (188)
T ss_pred cEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCC
Confidence 0 01 37888999998 655 6999999886 88998776443
No 28
>PLN02335 anthranilate synthase
Probab=98.35 E-value=3.8e-07 Score=89.85 Aligned_cols=109 Identities=15% Similarity=0.076 Sum_probs=78.8
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH------HHHH
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER------RAMN 170 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~------~~~~ 170 (524)
..|+++|||+.|. +.++.++. ++.....+|++| |+|+|.|+.++||.+.|...-+.||.|.+-+. ..+.
T Consensus 64 d~iVisgGPg~p~---d~~~~~~~-~~~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~ 139 (222)
T PLN02335 64 RGVLISPGPGTPQ---DSGISLQT-VLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFS 139 (222)
T ss_pred CEEEEcCCCCChh---hccchHHH-HHHhCCCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhh
Confidence 3699999999998 55566766 667777899999 99999999999999999833357888874321 1221
Q ss_pred hhhhHh----------h-hhCCCc-eEEEe-CCCCcccccCCCC-----CCCCCCCCC
Q 009818 171 TFWPLL----------M-RALPPD-VIFIA-DPEGSIMGGGGSI-----GPHYSGNDP 210 (524)
Q Consensus 171 ~~~~~l----------~-~~lp~~-~~f~a-~p~G~iMg~~~~~-----g~~~~~~~~ 210 (524)
.+...+ . ..+|+. +.++| +.+|.||++.|+. |++|.|...
T Consensus 140 ~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~ 197 (222)
T PLN02335 140 GLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESI 197 (222)
T ss_pred CCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCC
Confidence 111000 0 256766 88887 8999999999874 778866544
No 29
>CHL00101 trpG anthranilate synthase component 2
Probab=98.32 E-value=5.5e-07 Score=86.21 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=77.8
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTFW 173 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~---~~~~~~ 173 (524)
..|+++|+|+.|. +.. +...|++.+..++|.+| |+|+|.|..+|||.+.|. +.++|+.|+..... .+..+.
T Consensus 45 dgiiisgGpg~~~---~~~-~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~~~~~~~~l~~~~~ 119 (190)
T CHL00101 45 RHIIISPGPGHPR---DSG-ISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKA-PKPMHGKTSKIYHNHDDLFQGLP 119 (190)
T ss_pred CEEEECCCCCChH---HCc-chHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEEC-CCcccCceeeEeeCCcHhhccCC
Confidence 4699999999997 333 34455677788999999 999999999999999988 67789988743211 111111
Q ss_pred hHh---------h--hhCCCceEEEe-CCCCcccccCCCC-----CCCCCCCC
Q 009818 174 PLL---------M--RALPPDVIFIA-DPEGSIMGGGGSI-----GPHYSGND 209 (524)
Q Consensus 174 ~~l---------~--~~lp~~~~f~a-~p~G~iMg~~~~~-----g~~~~~~~ 209 (524)
..+ + ..||+.+.++| +++|.+||++++. |++|.|..
T Consensus 120 ~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~ 172 (190)
T CHL00101 120 NPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPES 172 (190)
T ss_pred CceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCcc
Confidence 110 0 15899999998 8899999999865 66776654
No 30
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=98.24 E-value=7.9e-07 Score=84.89 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=78.2
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHHHHhh--
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRAMNTF-- 172 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e---~~~~~~~-- 172 (524)
.|++||||..|. +.+..++. ++.+..++|++| |+|+|.|..+|||.+.+. ..++||.++... ...++.+
T Consensus 46 ~iilsgGP~~~~---~~~~~~~~-i~~~~~~~PiLGIC~G~Qlla~~~GG~v~~~-~~~~~G~~~~~~~~~~~lf~~l~~ 120 (191)
T PRK06774 46 HLVISPGPCTPN---EAGISLAV-IRHFADKLPILGVCLGHQALGQAFGARVVRA-RQVMHGKTSAICHSGQGVFRGLNQ 120 (191)
T ss_pred eEEEcCCCCChH---hCCCchHH-HHHhcCCCCEEEECHHHHHHHHHhCCEEEeC-CcceecceEEEEecCchhhcCCCC
Confidence 499999999997 44455555 677888999999 999999999999999998 346676544110 0111111
Q ss_pred ------hhHh-h--hhCCCceEEEe-CC-C---CcccccCCCC----CCCCCCCCCccCcHHHHHHH
Q 009818 173 ------WPLL-M--RALPPDVIFIA-DP-E---GSIMGGGGSI----GPHYSGNDPREMRLVGALRE 221 (524)
Q Consensus 173 ------~~~l-~--~~lp~~~~f~a-~p-~---G~iMg~~~~~----g~~~~~~~~~~m~l~~~L~k 221 (524)
|=.+ + ..||+++.++| ++ + ..||+++|+. |++|.|.......=..+++.
T Consensus 121 ~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~n 187 (191)
T PRK06774 121 PLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDN 187 (191)
T ss_pred CcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHH
Confidence 1110 0 35788888887 44 3 2589999875 88997766433222334443
No 31
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=98.20 E-value=1.1e-06 Score=84.31 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=79.5
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH---HHHhhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR---AMNTFW 173 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~---~~~~~~ 173 (524)
..|+++|||..|. +.....+. ++.+...+|.+| |+|||.|+.++||.+.+. ..++|+.+..-..+ .+..+.
T Consensus 45 ~~iilsgGp~~~~---~~~~~~~~-i~~~~~~~PiLGIClG~Qlia~a~Gg~v~~~-~~~~~G~~~~~~~~~~~l~~~~~ 119 (193)
T PRK08857 45 THLVISPGPCTPN---EAGISLQA-IEHFAGKLPILGVCLGHQAIAQVFGGQVVRA-RQVMHGKTSPIRHTGRSVFKGLN 119 (193)
T ss_pred CEEEEeCCCCChH---HCcchHHH-HHHhcCCCCEEEEcHHHHHHHHHhCCEEEeC-CCceeCceEEEEECCCcccccCC
Confidence 3599999999997 33334444 677788999999 999999999999999998 56777764311100 111110
Q ss_pred h--------Hh---hhhCCCceEEEe-CC--CC---cccccCCCC----CCCCCCCCCccCcHHHHHHHH
Q 009818 174 P--------LL---MRALPPDVIFIA-DP--EG---SIMGGGGSI----GPHYSGNDPREMRLVGALREV 222 (524)
Q Consensus 174 ~--------~l---~~~lp~~~~f~a-~p--~G---~iMg~~~~~----g~~~~~~~~~~m~l~~~L~kL 222 (524)
. .+ ...||+.+.++| ++ +| .|||+.|+. |++|.|.......-..+++..
T Consensus 120 ~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nF 189 (193)
T PRK08857 120 NPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANF 189 (193)
T ss_pred CccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHH
Confidence 0 00 026899999998 44 43 499998886 778877665333344444443
No 32
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=98.20 E-value=6.5e-07 Score=95.90 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=80.2
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH-----HHHHhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER-----RAMNTF 172 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~-----~~~~~~ 172 (524)
.|++++||+.|. ++....+. ++++.+++|++| |+|||.|+.++||.+.+. +|..|+...+-.. -++..-
T Consensus 284 GIiLSnGPGDP~---~~~~~ie~-ik~l~~~iPIlGICLGhQlLa~AlGGkv~K~-~~Gh~G~n~pV~~~~~~~v~itsq 358 (415)
T PLN02771 284 GVLFSNGPGDPS---AVPYAVET-VKELLGKVPVFGICMGHQLLGQALGGKTFKM-KFGHHGGNHPVRNNRTGRVEISAQ 358 (415)
T ss_pred EEEEcCCCCChh---HhhHHHHH-HHHHHhCCCEEEEcHHHHHHHHhcCCeEEEC-CCCcccceEEEEECCCCCEEEEec
Confidence 599999999886 66667777 777778999999 999999999999999998 9998888753110 000000
Q ss_pred hhHh---hhhCCCceEEEe--CCCCcccccCCCC----CCCCCCCC
Q 009818 173 WPLL---MRALPPDVIFIA--DPEGSIMGGGGSI----GPHYSGND 209 (524)
Q Consensus 173 ~~~l---~~~lp~~~~f~a--~p~G~iMg~~~~~----g~~~~~~~ 209 (524)
+=++ ...||.++.+++ ..||.+||++|+. |++|.|..
T Consensus 359 nHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa 404 (415)
T PLN02771 359 NHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEA 404 (415)
T ss_pred CHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCC
Confidence 1111 157899899886 4799999999998 66887654
No 33
>PRK05670 anthranilate synthase component II; Provisional
Probab=98.19 E-value=1.4e-06 Score=82.97 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=77.4
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH---HHHHHhhhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE---RRAMNTFWP 174 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e---~~~~~~~~~ 174 (524)
.|++++||+.|. ++....+ +|+.+..++|.+| |+|||.|...+||.+.+. +.+.|+.+++-. ...+..+..
T Consensus 46 glIlsgGpg~~~---d~~~~~~-~l~~~~~~~PvLGIClG~Qlla~alGg~v~~~-~~~~~g~~~~v~~~~~~l~~~~~~ 120 (189)
T PRK05670 46 AIVLSPGPGTPA---EAGISLE-LIREFAGKVPILGVCLGHQAIGEAFGGKVVRA-KEIMHGKTSPIEHDGSGIFAGLPN 120 (189)
T ss_pred EEEEcCCCCChH---HcchHHH-HHHHhcCCCCEEEECHHHHHHHHHhCCEEEec-CCcccCceeEEEeCCCchhccCCC
Confidence 499999999995 5555555 4788878899999 999999999999999987 557787665321 111111111
Q ss_pred H---------hhh--hCCCceEEEe-CCCCcccccCCCC----CCCCCCCCC
Q 009818 175 L---------LMR--ALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (524)
Q Consensus 175 ~---------l~~--~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~ 210 (524)
. .+. .||+.+.++| +++|.++|++++. |++|.|...
T Consensus 121 ~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~~~~~gvQfHPE~~ 172 (189)
T PRK05670 121 PFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKELPIYGVQFHPESI 172 (189)
T ss_pred CcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECCCCEEEEeeCCCcC
Confidence 1 111 3899999887 7899999999854 778877664
No 34
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.15 E-value=1.5e-06 Score=83.12 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=78.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH----HHHhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR----AMNTF 172 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~----~~~~~ 172 (524)
-.|+++|||..|. ......+. |+.+...+|.+| |+|+|.|...+||.+.+. ..++|+.|++-+.. .++.+
T Consensus 45 d~iIi~gGp~~~~---~~~~~~~~-i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~v~~~~~~~l~~~~ 119 (190)
T PRK06895 45 SHILISPGPDVPR---AYPQLFAM-LERYHQHKSILGVCLGHQTLCEFFGGELYNL-NNVRHGQQRPLKVRSNSPLFDGL 119 (190)
T ss_pred CEEEECCCCCChH---HhhHHHHH-HHHhcCCCCEEEEcHHHHHHHHHhCCeEeec-CCCccCceEEEEECCCChhhhcC
Confidence 3688899998774 44555554 787888999999 999999999999999987 44789998743211 22211
Q ss_pred hhH--------hh---hhCCCceEEEe-CCCCcccccCCCC----CCCCCCCC
Q 009818 173 WPL--------LM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (524)
Q Consensus 173 ~~~--------l~---~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~ 209 (524)
... +. ..||+.+..++ +.++.+|+++|+. |++|.|..
T Consensus 120 ~~~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~ 172 (190)
T PRK06895 120 PEEFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPES 172 (190)
T ss_pred CCceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECCCCEEEEEeCCCc
Confidence 111 10 14788888887 8899999999875 88997765
No 35
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=97.99 E-value=3e-06 Score=96.48 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=86.6
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTF 172 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~----~~~~~~ 172 (524)
-.|+++|||+.|.+. ...+.|-+.+..++|++| |+|+|.|+.+|||.+.+. +.|.||+|++-+. .++..+
T Consensus 561 DgLILsgGPGsp~d~----~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~-~~p~~G~~~~V~~~~~~~Lf~~l 635 (717)
T TIGR01815 561 DLVVLSPGPGRPADF----DVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL-PEPVHGKASRIRVLGPDALFAGL 635 (717)
T ss_pred CEEEEcCCCCCchhc----ccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEEC-CCCeeCcceEEEECCCChhhhcC
Confidence 369999999999843 235554444567899999 999999999999999998 8899999874321 122221
Q ss_pred --------hhHhh---hhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCCcc-------CcHHHHHHHHhc
Q 009818 173 --------WPLLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE-------MRLVGALREVLA 224 (524)
Q Consensus 173 --------~~~l~---~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~~~-------m~l~~~L~kL~~ 224 (524)
|=.+. ..||+++.++| +.+|.+|+++|+. |++|.|.+-.. ..++.++..+..
T Consensus 636 p~~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 636 PERLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAA 710 (717)
T ss_pred CCCCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhh
Confidence 11111 36889999998 8899999999865 77998766322 126666666643
No 36
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.94 E-value=7.1e-06 Score=80.30 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=78.5
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-------HHH
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-------AMN 170 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~-------~~~ 170 (524)
.|+++|||+.|. +++...+. ++++.+++|++| |+|||.|..++|+.+.+. . ++++.|+.-+.+ .+.
T Consensus 47 ~iIlsgGPg~~~---d~~~~~~l-i~~~~~~~PiLGIClG~Qlla~alGG~V~~~-~-~~~G~~~~i~~~~~~~~~~l~~ 120 (208)
T PRK05637 47 LICLSPGPGHPR---DAGNMMAL-IDRTLGQIPLLGICLGFQALLEHHGGKVEPC-G-PVHGTTDNMILTDAGVQSPVFA 120 (208)
T ss_pred EEEEeCCCCCHH---HhhHHHHH-HHHHhCCCCEEEEcHHHHHHHHHcCCeeccC-C-cccceEEEeEECCCCCCCcccC
Confidence 699999999997 55544444 677667899999 999999999999999876 3 567666422111 111
Q ss_pred hh------------hhH---------hhhhCCCceEEEe-CCC---CcccccCCCC----CCCCCCCCCccC----cHHH
Q 009818 171 TF------------WPL---------LMRALPPDVIFIA-DPE---GSIMGGGGSI----GPHYSGNDPREM----RLVG 217 (524)
Q Consensus 171 ~~------------~~~---------l~~~lp~~~~f~a-~p~---G~iMg~~~~~----g~~~~~~~~~~m----~l~~ 217 (524)
.. |.. -+..+|+.+.++| +++ +.+|++.+.. |++|.|...-.. .++.
T Consensus 121 ~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~n 200 (208)
T PRK05637 121 GLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSR 200 (208)
T ss_pred CCCcccccccccccCCceEEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHH
Confidence 10 000 1256899999998 333 3689977554 778866543332 2555
Q ss_pred HHHHHh
Q 009818 218 ALREVL 223 (524)
Q Consensus 218 ~L~kL~ 223 (524)
+++.++
T Consensus 201 fl~~~~ 206 (208)
T PRK05637 201 CVEQLL 206 (208)
T ss_pred HHHHHh
Confidence 555554
No 37
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=97.89 E-value=7.6e-06 Score=93.56 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=72.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLL 176 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l 176 (524)
.|++||||++|..+++.+.+-+. ++.. ..++|++| |+|||.|+.+|||.+.+. +.|+||++++- .+....+
T Consensus 56 ~VVIspGPG~p~~~~~~~i~~~i-~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~-~~~~hG~~~~v-----~~~~~~l 128 (742)
T TIGR01823 56 AIVVGPGPGNPNNAQDMGIISEL-WELANLDEVPVLGICLGFQSLCLAQGADISRL-PTPKHGQVYEM-----HTNDAAI 128 (742)
T ss_pred EEEECCCCCCccchhhhHHHHHH-HHhcccCCCcEEEEchhhHHHHhhcCCEEEEC-CCCCcCeEEEE-----EECCccc
Confidence 59999999999876665554444 5543 34799999 999999999999999988 78899986522 1111111
Q ss_pred h-----------------hhCCCc--eEEEe-CC-CCcccccCCCC----CCCCCCCC
Q 009818 177 M-----------------RALPPD--VIFIA-DP-EGSIMGGGGSI----GPHYSGND 209 (524)
Q Consensus 177 ~-----------------~~lp~~--~~f~a-~p-~G~iMg~~~~~----g~~~~~~~ 209 (524)
+ ...|++ +.+++ +. ++.|||+.|+. |++|.|..
T Consensus 129 f~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~ 186 (742)
T TIGR01823 129 FCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPES 186 (742)
T ss_pred cCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCccc
Confidence 1 123444 34444 44 45799999998 66887765
No 38
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.78 E-value=2e-05 Score=83.17 Aligned_cols=107 Identities=11% Similarity=0.004 Sum_probs=74.0
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-----HHHh-
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-----AMNT- 171 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~-----~~~~- 171 (524)
.|++++||+.|. +....++. ++++...+|.+| |+|||.|+.+|||.+.+. +|+.|+.+.+-... .+..
T Consensus 211 GIiLsgGPgdp~---~~~~~~~~-i~~~~~~~PvlGIClG~QlLa~a~Gg~v~kl-~~gh~G~~hpV~~~~~~~~~~ts~ 285 (354)
T PRK12838 211 GIVLSNGPGDPK---ELQPYLPE-IKKLISSYPILGICLGHQLIALALGADTEKL-PFGHRGANHPVIDLTTGRVWMTSQ 285 (354)
T ss_pred EEEEcCCCCChH---HhHHHHHH-HHHHhcCCCEEEECHHHHHHHHHhCCEEecC-CCCccCCceEEEECCCCeEEEecc
Confidence 589999999886 44556676 666666699999 999999999999999987 88877776532110 0000
Q ss_pred hhhHhh--hhCCCc-eEEEe--CCCCcccccCCCC----CCCCCCCCC
Q 009818 172 FWPLLM--RALPPD-VIFIA--DPEGSIMGGGGSI----GPHYSGNDP 210 (524)
Q Consensus 172 ~~~~l~--~~lp~~-~~f~a--~p~G~iMg~~~~~----g~~~~~~~~ 210 (524)
+=-.-+ ..+|.. +.+++ ..||.|||++|+. |++|.|...
T Consensus 286 ~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~ 333 (354)
T PRK12838 286 NHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAH 333 (354)
T ss_pred chheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCC
Confidence 000001 235543 56664 5799999999987 668877653
No 39
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.76 E-value=2.6e-05 Score=76.46 Aligned_cols=122 Identities=17% Similarity=0.110 Sum_probs=80.2
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHH---HHHH
Q 009818 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEG---ERRA 168 (524)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~---e~~~ 168 (524)
++.=..|++++||..|. ++...++. ++++. .++|++| |+|||.|..+|||.+.+. ..++++..+.. +...
T Consensus 44 ~~~~dgliisGGp~~~~---~~~~~~~~-i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~-~~~~~g~~~~v~~~~~~~ 118 (214)
T PRK07765 44 AAQFDGVLLSPGPGTPE---RAGASIDM-VRACAAAGTPLLGVCLGHQAIGVAFGATVDRA-PELLHGKTSSVHHTGVGV 118 (214)
T ss_pred hcCCCEEEECCCCCChh---hcchHHHH-HHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC-CCCccCceeEEEECCCcc
Confidence 34445699999998776 44445555 66665 4799999 999999999999999986 55555443210 0001
Q ss_pred HHh--------hhhH-hh--hhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCCcc----CcHHHHHH
Q 009818 169 MNT--------FWPL-LM--RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE----MRLVGALR 220 (524)
Q Consensus 169 ~~~--------~~~~-l~--~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~~~----m~l~~~L~ 220 (524)
+.. +|=. .+ ..||+.+.++| +++|.++|++++. |++|.|..-.. ..+..++.
T Consensus 119 ~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~ 190 (214)
T PRK07765 119 LAGLPDPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLT 190 (214)
T ss_pred ccCCCCccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHH
Confidence 110 0100 11 26899999998 8999999999875 77887764311 23555554
No 40
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=97.75 E-value=3e-05 Score=82.01 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=74.6
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH-----HHHH--
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE-----RRAM-- 169 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e-----~~~~-- 169 (524)
-.|++++||+.|. +....++. ++.+...+|++| |+|||.|+.+|||.+.+. +|..|+.-.+-. +-.+
T Consensus 216 DGIiLSgGPgdp~---~~~~~i~~-i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl-~~gh~G~nhpV~~~~~~~v~its 290 (358)
T TIGR01368 216 DGIFLSNGPGDPA---AVEPAIET-IRKLLEKIPIFGICLGHQLLALAFGAKTYKM-KFGHRGGNHPVKDLITGRVEITS 290 (358)
T ss_pred CEEEECCCCCCHH---HHHHHHHH-HHHHHcCCCEEEECHHHHHHHHHhCCceecc-CcCcCCCceeeEECCCCcEEEee
Confidence 4699999999886 44455666 777777999999 999999999999999997 777666433110 0000
Q ss_pred -HhhhhHhhhhCC-CceEEEe-C-CCCcccccCCCC----CCCCCCCCC
Q 009818 170 -NTFWPLLMRALP-PDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDP 210 (524)
Q Consensus 170 -~~~~~~l~~~lp-~~~~f~a-~-p~G~iMg~~~~~----g~~~~~~~~ 210 (524)
.|-+---.+.|| ..+.+++ + .||.|||++|+. |++|.|...
T Consensus 291 qnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~~ 339 (358)
T TIGR01368 291 QNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEAS 339 (358)
T ss_pred cCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCCC
Confidence 010000003566 5688886 4 699999999998 668876554
No 41
>PRK13566 anthranilate synthase; Provisional
Probab=97.71 E-value=2e-05 Score=89.95 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=78.1
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH----HHHhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR----AMNTF 172 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~----~~~~~ 172 (524)
.|+++|||+.|-+. .+.+. |+.+ ...+|++| |+|+|.|..+||+.+.+. ..|.|+.|++-..+ .+..+
T Consensus 572 gVVLsgGpgsp~d~----~~~~l-I~~a~~~~iPILGIClG~QlLa~alGG~V~~~-~~~~~G~~~~V~v~~~~~Lf~~l 645 (720)
T PRK13566 572 LVVLSPGPGRPSDF----DCKAT-IDAALARNLPIFGVCLGLQAIVEAFGGELGQL-AYPMHGKPSRIRVRGPGRLFSGL 645 (720)
T ss_pred EEEECCCCCChhhC----CcHHH-HHHHHHCCCcEEEEehhHHHHHHHcCCEEEEC-CCCccCCceEEEECCCCchhhcC
Confidence 48999999998632 34555 5554 45899999 999999999999999987 77889988633221 22211
Q ss_pred --------hhHhh---hhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCCc
Q 009818 173 --------WPLLM---RALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPR 211 (524)
Q Consensus 173 --------~~~l~---~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~~ 211 (524)
|-.+. ..||+++.++| +++|.||++.|+. |++|.|....
T Consensus 646 p~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~ 700 (720)
T PRK13566 646 PEEFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKTLPVAAVQFHPESIM 700 (720)
T ss_pred CCCCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECCCCEEEEeccCeeCC
Confidence 11111 34899999998 9999999999986 7788776643
No 42
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.66 E-value=3.8e-05 Score=72.70 Aligned_cols=107 Identities=11% Similarity=0.084 Sum_probs=73.2
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhc-CCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhh--
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFW-- 173 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~-- 173 (524)
..|++++|+..|. +....++. ++++.. .+|++| |+|+|.|+.+||+.+.+. .++.++.+.+-........+
T Consensus 41 dgiil~GG~~~~~---~~~~~~~~-~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~-~~~~~g~~~~v~~~~~~~~~~v 115 (178)
T cd01744 41 DGIFLSNGPGDPA---LLDEAIKT-VRKLLGKKIPIFGICLGHQLLALALGAKTYKM-KFGHRGSNHPVKDLITGRVYIT 115 (178)
T ss_pred CEEEECCCCCChh---HhHHHHHH-HHHHHhCCCCEEEECHHHHHHHHHcCCceecC-CCCCCCCceeeEEcCCCCcEEE
Confidence 3589999988776 33445555 666654 499999 999999999999999986 66666665421100000001
Q ss_pred ---hH-hh--hhCCCceEEEe-C-CCCcccccCCCC----CCCCCCCC
Q 009818 174 ---PL-LM--RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGND 209 (524)
Q Consensus 174 ---~~-l~--~~lp~~~~f~a-~-p~G~iMg~~~~~----g~~~~~~~ 209 (524)
=. -+ +.||+.+.++| + .+|.||++.|+. |++|.|..
T Consensus 116 ~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfHPE~ 163 (178)
T cd01744 116 SQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEA 163 (178)
T ss_pred EcCceEEEcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeCCCC
Confidence 00 01 36999999998 4 589999999876 77887654
No 43
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.64 E-value=5.6e-05 Score=71.49 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=72.1
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~ 177 (524)
.|+++|++..|.+.+ .+..|++.+..++|.+| |+|+|.|..++|+.+.+. ..+.++.|.+-.- ....++
T Consensus 45 gvil~gG~~~~~~~~----~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~-~~~~~g~~~~v~~-----~~~~~~ 114 (184)
T cd01743 45 AIVISPGPGHPEDAG----ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRA-PEPMHGKTSEIHH-----DGSGLF 114 (184)
T ss_pred EEEECCCCCCcccch----hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeC-CCCCcCceeEEEE-----CCCccc
Confidence 389999999998543 45555666777899999 999999999999999987 5666776652211 111121
Q ss_pred -----------------hhCCCc--eEEEe-CCCCcccccCCCC----CCCCCCCC
Q 009818 178 -----------------RALPPD--VIFIA-DPEGSIMGGGGSI----GPHYSGND 209 (524)
Q Consensus 178 -----------------~~lp~~--~~f~a-~p~G~iMg~~~~~----g~~~~~~~ 209 (524)
..+|.. +.++| ++++.+++++++. |++|.|..
T Consensus 115 ~~~~~~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~~~i~gvQfHPE~ 170 (184)
T cd01743 115 KGLPQPFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRDLPIYGVQFHPES 170 (184)
T ss_pred cCCCCCcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCCCCEEEEeeCCCc
Confidence 234544 66776 8899999999877 66776654
No 44
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.59 E-value=5.8e-05 Score=79.89 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=74.3
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH-----HHHHHh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE-----RRAMNT 171 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e-----~~~~~~ 171 (524)
.|++++||+.|. +....++. ++++. ..+|++| |+|||.|+.+|||.+.+. +|..|+...+-. +..+..
T Consensus 221 GIvLSgGPgdp~---~~~~~~~~-i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl-~~gh~G~~~pv~~~~~~~~~its 295 (360)
T PRK12564 221 GVFLSNGPGDPA---ALDYAIEM-IRELLEKKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHPVKDLETGKVEITS 295 (360)
T ss_pred EEEEeCCCCChH---HHHHHHHH-HHHHHHcCCeEEEECHHHHHHHHHhCCcEecc-CCCccCCceeeEECCCCcEEEEe
Confidence 489999999886 44445555 77766 4799999 999999999999999997 777665432100 000000
Q ss_pred hhhHh-h--hhCCCceEEEe-C-CCCcccccCCCC----CCCCCCCCC
Q 009818 172 FWPLL-M--RALPPDVIFIA-D-PEGSIMGGGGSI----GPHYSGNDP 210 (524)
Q Consensus 172 ~~~~l-~--~~lp~~~~f~a-~-p~G~iMg~~~~~----g~~~~~~~~ 210 (524)
.+=.+ + +.||..+.+++ + .||.|||+.|+. |++|.|...
T Consensus 296 ~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~ 343 (360)
T PRK12564 296 QNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEAS 343 (360)
T ss_pred cCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCC
Confidence 01111 1 37888888887 4 599999999987 778877554
No 45
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.47 E-value=0.00011 Score=78.49 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=69.6
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHH---HHHHH---H
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEG---ERRAM---N 170 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~---e~~~~---~ 170 (524)
.|++++||+.|. +....++. ++.+ ...+|++| |+|||.|+.+|||.+.+. +|..++...+- .+-.+ .
T Consensus 236 gIilSgGPg~p~---~~~~~i~~-i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~-~~Gh~g~n~pv~~~~~v~itsq~ 310 (382)
T CHL00197 236 GILLSNGPGDPS---AIHYGIKT-VKKLLKYNIPIFGICMGHQILSLALEAKTFKL-KFGHRGLNHPSGLNQQVEITSQN 310 (382)
T ss_pred EEEEcCCCCChh---HHHHHHHH-HHHHHhCCCCEEEEcHHHHHHHHHhCCEEecc-CCCCCCCCEecCCCCceEEeecc
Confidence 599999999997 44556667 4554 46899999 999999999999999987 55544321100 00001 1
Q ss_pred hhhhHhhhhCCC-ceEEE--eCCCCcccccCCCC----CCCCCCCCC
Q 009818 171 TFWPLLMRALPP-DVIFI--ADPEGSIMGGGGSI----GPHYSGNDP 210 (524)
Q Consensus 171 ~~~~~l~~~lp~-~~~f~--a~p~G~iMg~~~~~----g~~~~~~~~ 210 (524)
|-+-.-.+.+|. ++.++ +..||.|||++|+. |++|.|...
T Consensus 311 H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~~ 357 (382)
T CHL00197 311 HGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEAS 357 (382)
T ss_pred hheEeeccccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCCC
Confidence 111100145553 45555 34699999999998 668866543
No 46
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.15 E-value=0.0002 Score=71.52 Aligned_cols=115 Identities=12% Similarity=0.021 Sum_probs=72.1
Q ss_pred hhhccceeeCCCCCCCCChhhhhh-hHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCC-CCcCCHHHHH--
Q 009818 94 LEAQAKVCTGPTQTRPLREDEAFK-VLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPE-ATQWSEGERR-- 167 (524)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~-~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~-~~~~s~~e~~-- 167 (524)
++.-..|++++++..+-+++.--. .++. |+++ ..++|.+| |+|||.|..++||.+.+. ..+. +.-|.+.+.+
T Consensus 50 l~~~dgvii~Ggp~~~~d~~~wi~~~~~~-i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~-~~G~~e~G~~~i~~~~~ 127 (239)
T PRK06490 50 LEDHAGAVIFGGPMSANDPDDFIRREIDW-ISVPLKENKPFLGICLGAQMLARHLGARVAPH-PDGRVEIGYYPLRPTEA 127 (239)
T ss_pred ccccCEEEEECCCCCCCCCchHHHHHHHH-HHHHHHCCCCEEEECHhHHHHHHHcCCEeecC-CCCCCccceEEeEECCC
Confidence 344455777779888875543222 3444 6654 55799999 999999999999999987 2211 2222211111
Q ss_pred --HHHhh------hhHhhhhCCCceEEEe-CCCCcccccCCCC---CCCCCCCCC
Q 009818 168 --AMNTF------WPLLMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDP 210 (524)
Q Consensus 168 --~~~~~------~~~l~~~lp~~~~f~a-~p~G~iMg~~~~~---g~~~~~~~~ 210 (524)
.+..+ |=...-.||+....+| ++++.+|+++++. |.+|.|...
T Consensus 128 ~~~~~~~~~~~~~~H~d~~~lP~~~~~LA~s~~~~~qa~~~~~~v~g~QfHPE~~ 182 (239)
T PRK06490 128 GRALMHWPEMVYHWHREGFDLPAGAELLATGDDFPNQAFRYGDNAWGLQFHPEVT 182 (239)
T ss_pred cccccCCCCEEEEECCccccCCCCCEEEEeCCCCCeEEEEeCCCEEEEeeCccCC
Confidence 11111 1111136899999998 8889999999864 778855444
No 47
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.08 E-value=0.00064 Score=67.65 Aligned_cols=111 Identities=11% Similarity=-0.041 Sum_probs=69.4
Q ss_pred ceeeCCCCCCCCChhhh-hhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH-------HH
Q 009818 99 KVCTGPTQTRPLREDEA-FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER-------RA 168 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a-~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~-------~~ 168 (524)
.|+++.++....++..= ....+. |+.+ ..++|++| |.|||.|..++||.+.+. ....+.-|.+.+. ..
T Consensus 57 gvvi~Gg~~~~~d~~~w~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~g~e~G~~~v~~~~~~~~~~l 134 (237)
T PRK09065 57 GVIITGSWAMVTDRLDWSERTADW-LRQAAAAGMPLLGICYGHQLLAHALGGEVGYN-PAGRESGTVTVELHPAAADDPL 134 (237)
T ss_pred EEEEeCCCcccCCCchhHHHHHHH-HHHHHHCCCCEEEEChhHHHHHHHcCCccccC-CCCCccceEEEEEccccccChh
Confidence 37777777655432211 123334 5554 35799999 999999999999999887 3323332332211 12
Q ss_pred HHhhhhH---------hhhhCCCceEEEe-CCCCcccccCCCC---CCCCCCCCCc
Q 009818 169 MNTFWPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPR 211 (524)
Q Consensus 169 ~~~~~~~---------l~~~lp~~~~f~a-~p~G~iMg~~~~~---g~~~~~~~~~ 211 (524)
+..+.+. -+..||+.+.++| ++++.++|++++. |++|.|....
T Consensus 135 ~~~~~~~~~v~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~~~i~gvQfHPE~~~ 190 (237)
T PRK09065 135 FAGLPAQFPAHLTHLQSVLRLPPGAVVLARSAQDPHQAFRYGPHAWGVQFHPEFTA 190 (237)
T ss_pred hhcCCccCcEeeehhhhhhhCCCCCEEEEcCCCCCeeEEEeCCCEEEEEeCCcCCH
Confidence 2222111 1256999999998 7778999999874 7788665443
No 48
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.06 E-value=0.00011 Score=69.33 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=79.7
Q ss_pred hhhccceeeCCCCCCCCChhhhhhhHHHHHHHhhc-CCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----H
Q 009818 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----R 167 (524)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~----~ 167 (524)
++.-..|+++|+++.|.+ ....++. +++++. ++|++| |+|||.|.-.||+.+.+....+.++....... .
T Consensus 40 ~~~~d~iii~Gg~~~~~d---~~~~~~~-i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~~~ 115 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYD---IEGLIEL-IREARERKIPILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPEDP 115 (192)
T ss_dssp TTTSSEEEEECESSSTTS---HHHHHHH-HHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEEHG
T ss_pred hcCCCEEEECCcCCcccc---ccccccc-cccccccceEEEEEeehhhhhHHhcCCcccccccccccccccccccccccc
Confidence 455567899999999994 5555555 888887 999999 99999999999999998843565543221000 0
Q ss_pred HHHhhhhHhh---------hh---CCCceEEEe-CCCC-cccccCCCCC----CCCCCCCCccC
Q 009818 168 AMNTFWPLLM---------RA---LPPDVIFIA-DPEG-SIMGGGGSIG----PHYSGNDPREM 213 (524)
Q Consensus 168 ~~~~~~~~l~---------~~---lp~~~~f~a-~p~G-~iMg~~~~~g----~~~~~~~~~~m 213 (524)
.+..+...+. .. +|+.+.++| +.++ .+|++.++.. .+|.|......
T Consensus 116 ~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~ 179 (192)
T PF00117_consen 116 LFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSP 179 (192)
T ss_dssp GGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTST
T ss_pred cccccccccccccccceeeecccccccccccccccccccccccccccccEEEEEecCCcCCCCC
Confidence 1111101100 34 899999998 6566 7999999985 57766555554
No 49
>PRK00758 GMP synthase subunit A; Validated
Probab=96.78 E-value=0.00087 Score=63.52 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=67.3
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH----HHHHHhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE----RRAMNTF 172 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e----~~~~~~~ 172 (524)
..|++++++. .+.+....+. |+. .++|++| |+|||.|..++|+.+.|. +.++++ |.+-+ ...+..+
T Consensus 43 dgivi~Gg~~----~~~~~~~~~~-l~~--~~~PilGIC~G~Q~L~~a~Gg~v~~~-~~~~~g-~~~i~~~~~~~l~~~~ 113 (184)
T PRK00758 43 DGLILSGGPD----IERAGNCPEY-LKE--LDVPILGICLGHQLIAKAFGGEVGRG-EYGEYA-LVEVEILDEDDILKGL 113 (184)
T ss_pred CEEEECCCCC----hhhccccHHH-HHh--CCCCEEEEeHHHHHHHHhcCcEEecC-CCceee-eEEEEEcCCChhhhCC
Confidence 4578877773 2333333344 553 4799999 999999999999998876 555544 32211 1122221
Q ss_pred hhH---------hhhhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCC
Q 009818 173 WPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (524)
Q Consensus 173 ~~~---------l~~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~ 210 (524)
.+. -+..+|+.+.++| +++|.+++++++. |++|.|...
T Consensus 114 ~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~~~~~g~QfHPE~~ 165 (184)
T PRK00758 114 PPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQFHPEVA 165 (184)
T ss_pred CCCcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECCCCEEEEEcCCccC
Confidence 111 1246899989898 8899999998754 668866543
No 50
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.74 E-value=0.0042 Score=62.22 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=69.6
Q ss_pred hccceeeCCCCCCCCCh--hh-hh-h-hHH---HHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH
Q 009818 96 AQAKVCTGPTQTRPLRE--DE-AF-K-VLD---TILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE 165 (524)
Q Consensus 96 ~~~~v~~gp~~~~P~~~--~~-a~-~-~~~---~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e 165 (524)
.=..|+++.++..|-+. ++ -. + +.+ .+++.+ ..++|++| |+|||.|...|||.+.+. ...+--|.+.+
T Consensus 51 ~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~--~g~e~G~~~v~ 128 (242)
T PRK07567 51 DYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRT--YGEPVGAVTVS 128 (242)
T ss_pred hccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecC--CCCcCccEEEE
Confidence 33468888888887654 11 11 0 111 112222 46799999 999999999999999884 22222222221
Q ss_pred H-------HHHHhhhhH---------hhhhCCCceEEEe-CCCCcccccCCCC---CCCCCCCCCccC
Q 009818 166 R-------RAMNTFWPL---------LMRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPREM 213 (524)
Q Consensus 166 ~-------~~~~~~~~~---------l~~~lp~~~~f~a-~p~G~iMg~~~~~---g~~~~~~~~~~m 213 (524)
. ..+..+... -+..||+.+.++| ++++.+++++++. |++|.|.-..++
T Consensus 129 l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~~~~~gvQfHPE~~~~~ 196 (242)
T PRK07567 129 LTDAGRADPLLAGLPDTFTAFVGHKEAVSALPPGAVLLATSPTCPVQMFRVGENVYATQFHPELDADG 196 (242)
T ss_pred ECCccCCChhhcCCCCceEEEeehhhhhhhCCCCCEEEEeCCCCCEEEEEeCCCEEEEEeCCcCCHHH
Confidence 1 122222111 1246999999998 7788899998753 778855444443
No 51
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.67 E-value=0.0043 Score=59.48 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=58.5
Q ss_pred HHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhhhhCCCceEEEe-CCCCccc
Q 009818 119 LDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIA-DPEGSIM 195 (524)
Q Consensus 119 ~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~~~lp~~~~f~a-~p~G~iM 195 (524)
.+. |+++ ...+|++| |+|+|.|..+|||.+.|. + .-|+ +--..+..+|+.+.++| +++|.++
T Consensus 90 ~~~-~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---~--~v~~---------~H~~~v~~~~~~~~vla~~~d~~ve 154 (189)
T cd01745 90 LAL-LRAALERGKPILGICRGMQLLNVALGGTLYQD---I--RVNS---------LHHQAIKRLADGLRVEARAPDGVIE 154 (189)
T ss_pred HHH-HHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC---C--ceec---------hHHHHHhhcCCCCEEEEECCCCcEE
Confidence 444 6666 46799999 999999999999999887 2 1222 22223467899999998 7899999
Q ss_pred ccCCCC-----CCCCCCCCCc
Q 009818 196 GGGGSI-----GPHYSGNDPR 211 (524)
Q Consensus 196 g~~~~~-----g~~~~~~~~~ 211 (524)
+++++. |++|.|....
T Consensus 155 a~~~~~~~~~~gvQfHPE~~~ 175 (189)
T cd01745 155 AIESPDRPFVLGVQWHPEWLA 175 (189)
T ss_pred EEEeCCCCeEEEEecCCCcCc
Confidence 999874 6688665544
No 52
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.39 E-value=0.0029 Score=59.39 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=69.2
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH---HHHHHHHhhhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE---GERRAMNTFWP 174 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~---~e~~~~~~~~~ 174 (524)
.|+++.++..+.+++ +....+.+++ ...|.+| |+|+|.|..++|+.+.+. .-|+.+..+- .+...+..+..
T Consensus 44 gvIl~Gg~~~~~~~~-~~~~~~~~~~---~~~PilGIC~G~Qll~~~~gg~v~~~-~~~~~G~~~v~~~~~~~l~~~~~~ 118 (181)
T cd01742 44 GIILSGGPSSVYEED-APRVDPEIFE---LGVPVLGICYGMQLIAKALGGKVERG-DKREYGKAEIEIDDSSPLFEGLPD 118 (181)
T ss_pred EEEECCCcccccccc-cchhhHHHHh---cCCCEEEEcHHHHHHHHhcCCeEEeC-CCCcceEEEEEecCCChhhcCCCC
Confidence 377777887776443 3344444333 2899999 999999999999988876 4455442220 01111211111
Q ss_pred H---------hhhhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCCc
Q 009818 175 L---------LMRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPR 211 (524)
Q Consensus 175 ~---------l~~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~~ 211 (524)
. -+..+|+.+.++| +.++.|+++.++. |.+|.|....
T Consensus 119 ~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~~~~~g~QfHPE~~~ 169 (181)
T cd01742 119 EQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQFHPEVTH 169 (181)
T ss_pred ceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCCCcEEEEEcCCcccc
Confidence 1 1146899999987 7789999999875 7788665544
No 53
>PLN02347 GMP synthetase
Probab=96.39 E-value=0.0027 Score=70.58 Aligned_cols=185 Identities=11% Similarity=0.027 Sum_probs=105.8
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCH---HHHHHHHhhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSE---GERRAMNTFW 173 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~---~e~~~~~~~~ 173 (524)
.|++++||..+..+ ++....+.|++.+ ...+|++| |+|||.|+.+||+.+.+. .-+++|.-+- ........+.
T Consensus 56 gIILsGGP~sv~~~-~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~-~~~e~G~~~v~i~~~~~Lf~~l~ 133 (536)
T PLN02347 56 VVILSGGPHSVHVE-GAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPG-EKQEYGRMEIRVVCGSQLFGDLP 133 (536)
T ss_pred EEEECCCCCccccc-CCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEec-CCcccceEEEEEcCCChhhhcCC
Confidence 58888898877633 2222334445444 24799999 999999999999999987 3355554320 0111221111
Q ss_pred hH--h---------hhhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCCccC----cHHHHHHHHhcCC-CCCH-H
Q 009818 174 PL--L---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPREM----RLVGALREVLAGG-HLGY-E 231 (524)
Q Consensus 174 ~~--l---------~~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~~~m----~l~~~L~kL~~G~-~Ls~-e 231 (524)
.. . +..||+.+.++| +.+|.||++.|+. |++|.|...... .++.++.++..-+ +.+. +
T Consensus 134 ~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~ 213 (536)
T PLN02347 134 SGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQD 213 (536)
T ss_pred CCceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcch
Confidence 10 0 136888889898 8899999998755 778877665421 2556665554332 3332 2
Q ss_pred HHHHHHHHhccCcc-C-----CCCCCCCHHHHHHHHHH-H--HhcC-------CCHHHHHHHHHHHHhhC
Q 009818 232 EVQGVLRDVLPLQV-D-----NKAPGVSESLLSAFLIG-Q--RMNR-------ETDRELKAYCLAFDDEL 285 (524)
Q Consensus 232 EA~~a~~~IL~~~~-~-----~~~G~~s~~QigAFLia-L--R~KG-------ET~eELaG~a~Amre~~ 285 (524)
...+.++.+-.... + .-+|.++-+-+++++.- + ++.. ....|....++.+.+..
T Consensus 214 ~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~l 283 (536)
T PLN02347 214 VLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDL 283 (536)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHc
Confidence 22222333221111 1 12788888777766544 1 1221 23457766666666554
No 54
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=95.94 E-value=0.013 Score=62.15 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=70.8
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhcCC-Cccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhh-hhHh
Q 009818 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGDL-KDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTF-WPLL 176 (524)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l-~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~-~~~l 176 (524)
|-+|=||+-|. ..-..+++ +|++.+.. |+.| |+|||-++.++||+|.|- +|=-||-==+ ..++. |+-.
T Consensus 224 iflSNGPGDP~---~~~~~i~~-ik~l~~~~iPifGICLGHQllalA~Ga~T~Km-kFGHrG~NhP----V~dl~tgrv~ 294 (368)
T COG0505 224 IFLSNGPGDPA---PLDYAIET-IKELLGTKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHP----VKDLDTGRVY 294 (368)
T ss_pred EEEeCCCCChh---HHHHHHHH-HHHHhccCCCeEEEcHHHHHHHHhcCCceeec-ccCCCCCCcC----cccccCCeEE
Confidence 34444455554 55567888 88888887 9999 999999999999999998 7754442110 01100 1111
Q ss_pred h-----------hhCCCc--eEEEeCCCCcccccCCCCCCCCCCCCCccC
Q 009818 177 M-----------RALPPD--VIFIADPEGSIMGGGGSIGPHYSGNDPREM 213 (524)
Q Consensus 177 ~-----------~~lp~~--~~f~a~p~G~iMg~~~~~g~~~~~~~~~~m 213 (524)
. +.++.+ +.++.--||++=|+.|+..|-|.-|..+|-
T Consensus 295 ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEA 344 (368)
T COG0505 295 ITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEA 344 (368)
T ss_pred EEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCC
Confidence 1 356653 667778899999999999886665555553
No 55
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=95.56 E-value=0.01 Score=59.88 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=57.8
Q ss_pred HHHHh-hcCCCccc-cccHHHHhHHHHhhhhccc----cCCCCCcCCHH---------------HHHHHH-hh-h-----
Q 009818 122 ILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRAN----AFPEATQWSEG---------------ERRAMN-TF-W----- 173 (524)
Q Consensus 122 ~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~----~~~~~~~~s~~---------------e~~~~~-~~-~----- 173 (524)
+|+.+ ..++|++| |.|+|.|..+||+.+.+.- ....|++..+. +...+. .+ +
T Consensus 99 li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~~~~~ 178 (254)
T PRK11366 99 LINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSNFW 178 (254)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCCCceEE
Confidence 36664 46899999 9999999999999999761 00022221100 000111 11 1
Q ss_pred -----hHhhhhCCCceEEEe-CCCCcccccCCCC-----CCCCCCCCC
Q 009818 174 -----PLLMRALPPDVIFIA-DPEGSIMGGGGSI-----GPHYSGNDP 210 (524)
Q Consensus 174 -----~~l~~~lp~~~~f~a-~p~G~iMg~~~~~-----g~~~~~~~~ 210 (524)
-+-++.||+.+.++| ++||.||++.++. |++|.|...
T Consensus 179 Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~ 226 (254)
T PRK11366 179 VNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWN 226 (254)
T ss_pred eehHHHHHHhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcC
Confidence 112368999999998 9999999998754 778866543
No 56
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=95.15 E-value=0.034 Score=52.94 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=67.0
Q ss_pred ceeeCCCCCCCCChhhhhhhHHHHHHH-hhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHH----HHHHHhh
Q 009818 99 KVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGE----RRAMNTF 172 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~-~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e----~~~~~~~ 172 (524)
.|++..++..+-..+. .+. ++. .....|.+| |+|+|.|..++|+.+.+. ..++.+ |.+-. -..+..+
T Consensus 44 glii~Gg~~~~~~~~~----~~~-i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~-~~~~~g-~~~v~~~~~~~l~~~~ 116 (188)
T TIGR00888 44 GIILSGGPSSVYAENA----PRA-DEKIFELGVPVLGICYGMQLMAKQLGGEVGRA-EKREYG-KAELEILDEDDLFRGL 116 (188)
T ss_pred EEEECCCCCCcCcCCc----hHH-HHHHHhCCCCEEEECHHHHHHHHhcCceEecC-CCccce-eEEEEEecCCHhhcCC
Confidence 4777778877764332 222 343 335789999 999999999999988876 445544 32111 0111111
Q ss_pred hhHh---------hhhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCC
Q 009818 173 WPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDP 210 (524)
Q Consensus 173 ~~~l---------~~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~ 210 (524)
...+ +..||+.+.+++ ++++.++++.++. |.+|.|...
T Consensus 117 ~~~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~~~~~g~QfHPE~~ 168 (188)
T TIGR00888 117 PDESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEVT 168 (188)
T ss_pred CCCcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECCCCEEEEeeCCccC
Confidence 1111 035888888887 7788899999876 667765543
No 57
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=94.49 E-value=0.058 Score=50.97 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=68.5
Q ss_pred hhhccceeeCCCCCCC-CChhh-hhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH-
Q 009818 94 LEAQAKVCTGPTQTRP-LREDE-AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA- 168 (524)
Q Consensus 94 ~~~~~~v~~gp~~~~P-~~~~~-a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~- 168 (524)
++.=-.|+++.++..+ ..... .....+. |+.+ ....|..+ |.|+|.++..+|+.+.|. .+..+..|.+-.-+.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~-i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~-~~~~~~g~~~v~~~~~ 121 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKEL-IRQALAAGKPVLGICLGHQLLARALGGKVGRN-PKGWEIGWFPVTLTEA 121 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHH-HHHHHHCCCCEEEECccHHHHHHHhCCEEecC-CCcceeEEEEEEeccc
Confidence 3444557777677666 21111 1223334 6655 34699999 999999999999998887 433233343221111
Q ss_pred ------HHhhhhHh---------hhhCCCceEEEe-CCCCcccccCCCC---CCCCCCC
Q 009818 169 ------MNTFWPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGN 208 (524)
Q Consensus 169 ------~~~~~~~l---------~~~lp~~~~f~a-~p~G~iMg~~~~~---g~~~~~~ 208 (524)
+..+...+ +..+|+.+.+++ ++++.+++++++. |.+|.|.
T Consensus 122 ~~~~~l~~~~~~~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~~~~~g~QfHPE 180 (188)
T cd01741 122 GKADPLFAGLPDEFPVFHWHGDTVVELPPGAVLLASSEACPNQAFRYGDRALGLQFHPE 180 (188)
T ss_pred cccCchhhcCCCcceEEEEeccChhhCCCCCEEeecCCCCCcceEEecCCEEEEccCch
Confidence 00000111 145899999998 7889999999753 6677654
No 58
>PRK05665 amidotransferase; Provisional
Probab=94.12 E-value=0.14 Score=51.39 Aligned_cols=138 Identities=18% Similarity=0.082 Sum_probs=77.6
Q ss_pred hhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH------
Q 009818 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER------ 166 (524)
Q Consensus 95 ~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~------ 166 (524)
+-.+-|++|= +.-.-+++.-..-+...||++. ...|.+| |.|||.|+-++||.+.+. |. -|+.+-.
T Consensus 57 ~~dgiiitGs-~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~---~~--G~e~G~~~~~~~~ 130 (240)
T PRK05665 57 KFDAYLVTGS-KADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERA---SQ--GWGVGIHRYQLAA 130 (240)
T ss_pred cCCEEEECCC-CCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC---CC--CcccceEEEEecC
Confidence 3455555553 3333333333334445566653 4689999 999999999999999886 31 1321110
Q ss_pred --HHHHhhhhHh---------hhhCCCceEEEe-CCCCcccccCCCC---CCCCCCCCCccCcHHHHHHHHhcCCCCCHH
Q 009818 167 --RAMNTFWPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPREMRLVGALREVLAGGHLGYE 231 (524)
Q Consensus 167 --~~~~~~~~~l---------~~~lp~~~~f~a-~p~G~iMg~~~~~---g~~~~~~~~~~m~l~~~L~kL~~G~~Ls~e 231 (524)
.++..+.+.+ +..||+....+| ++...+-+++... |.+|.|....++ ++.+|+. +.+.++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~~~~~g~QfHPE~~~~~-~~~~l~~--~~~~~~~~ 207 (240)
T PRK05665 131 HAPWMSPAVTELTLLISHQDQVTALPEGATVIASSDFCPFAAYHIGDQVLCFQGHPEFVHDY-SRALLDL--RQEHLGEE 207 (240)
T ss_pred CCccccCCCCceEEEEEcCCeeeeCCCCcEEEEeCCCCcEEEEEeCCCEEEEecCCcCcHHH-HHHHHHH--hhhhcCHH
Confidence 0111111111 146899988887 5555565555432 667744333332 4444432 22458888
Q ss_pred HHHHHHHHhc
Q 009818 232 EVQGVLRDVL 241 (524)
Q Consensus 232 EA~~a~~~IL 241 (524)
++.+.++.+.
T Consensus 208 ~~~~~~~~l~ 217 (240)
T PRK05665 208 VYSKGVASLA 217 (240)
T ss_pred HHHHHHHHcC
Confidence 8888887775
No 59
>PRK00074 guaA GMP synthase; Reviewed
Probab=93.55 E-value=0.059 Score=59.70 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=92.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHH----HHHHhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGER----RAMNTF 172 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~----~~~~~~ 172 (524)
..|+++.++..+.+++ +-.....+++ ..+|++| |.|+|.|...||+.+.+. .-++.| |.+.+. ..+..+
T Consensus 48 dgIIlsGGp~sv~~~~-~p~~~~~i~~---~~~PvLGIC~G~QlLa~~lGG~V~~~-~~~e~G-~~~i~i~~~~~Lf~~l 121 (511)
T PRK00074 48 KGIILSGGPASVYEEG-APRADPEIFE---LGVPVLGICYGMQLMAHQLGGKVERA-GKREYG-RAELEVDNDSPLFKGL 121 (511)
T ss_pred CEEEECCCCcccccCC-CccccHHHHh---CCCCEEEECHHHHHHHHHhCCeEEec-CCcccc-eEEEEEcCCChhhhcC
Confidence 3577777888766433 3444455443 4799999 999999999999999887 334444 222211 122222
Q ss_pred hhHh---------hhhCCCceEEEe-CCCCcccccCCCC----CCCCCCCCCcc----CcHHHHHHHHh-cCCCCCHH--
Q 009818 173 WPLL---------MRALPPDVIFIA-DPEGSIMGGGGSI----GPHYSGNDPRE----MRLVGALREVL-AGGHLGYE-- 231 (524)
Q Consensus 173 ~~~l---------~~~lp~~~~f~a-~p~G~iMg~~~~~----g~~~~~~~~~~----m~l~~~L~kL~-~G~~Ls~e-- 231 (524)
.... +..+|+.+.++| ++++.++++.++. |++|.|..... ..++.++.++. .-++.+.+
T Consensus 122 ~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~ 201 (511)
T PRK00074 122 PEEQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENF 201 (511)
T ss_pred CCceEEEEECCeEEEecCCCcEEEEEeCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHH
Confidence 1111 146899999998 7888999998654 77887665432 12555554553 22344432
Q ss_pred --HHHHHHHHhccCccC-----CCCCCCCHHHHHHHHH
Q 009818 232 --EVQGVLRDVLPLQVD-----NKAPGVSESLLSAFLI 262 (524)
Q Consensus 232 --EA~~a~~~IL~~~~~-----~~~G~~s~~QigAFLi 262 (524)
+..+-++..+ .+ .-+|.++-.-++++|.
T Consensus 202 ~~~~~~~l~~~v---~~~~vlva~SGGvDS~vll~ll~ 236 (511)
T PRK00074 202 IEEAIEEIREQV---GDKKVILGLSGGVDSSVAAVLLH 236 (511)
T ss_pred HHHHHHHHHHhc---CCCcEEEEeCCCccHHHHHHHHH
Confidence 2223333322 11 1167777777666664
No 60
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=93.09 E-value=0.051 Score=52.46 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=67.1
Q ss_pred hhccceeeCCCCCCCCChh-hhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCC----HHHH--
Q 009818 95 EAQAKVCTGPTQTRPLRED-EAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EGER-- 166 (524)
Q Consensus 95 ~~~~~v~~gp~~~~P~~~~-~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s----~~e~-- 166 (524)
+.++ |+++.+++.+.... .--...+.|.+......|+++ |.|+|.++..+|+..+...+.+++|... ..+.
T Consensus 43 ~~d~-iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~ 121 (200)
T PRK13527 43 DCDA-LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGR 121 (200)
T ss_pred cCCE-EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccC
Confidence 4444 55555766553211 111346775555557789999 9999999999998655443443333211 0000
Q ss_pred --------HHHHhh--------hhH-hhhhCCCceEEEe-CCCCcccccCCCC--CCCCCCCCCccCcHH
Q 009818 167 --------RAMNTF--------WPL-LMRALPPDVIFIA-DPEGSIMGGGGSI--GPHYSGNDPREMRLV 216 (524)
Q Consensus 167 --------~~~~~~--------~~~-l~~~lp~~~~f~a-~p~G~iMg~~~~~--g~~~~~~~~~~m~l~ 216 (524)
-.+..+ |-. .+..||+.+.++| +++ .+|+.+... |.+|.|.-..+.++-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~lp~~~~~la~~~~-~~~a~~~~~~~g~QfHPE~~~~~~l~ 190 (200)
T PRK13527 122 QRDSFEAEIDLSGLDGPFHAVFIRAPAITKVGGDVEVLAKLDD-RIVAVEQGNVLATAFHPELTDDTRIH 190 (200)
T ss_pred ccccEEEeEeccccCCcceEEEEccccccccCCCeEEEEEECC-EEEEEEECCEEEEEeCCCCCCCCHHH
Confidence 001111 110 1256899999998 555 467776443 778877655554433
No 61
>PRK08136 glycosyl transferase family protein; Provisional
Probab=92.91 E-value=0.86 Score=47.96 Aligned_cols=121 Identities=19% Similarity=0.257 Sum_probs=78.9
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~ 177 (524)
.+|+-||..+|+|+.|||..+++.|+ .|.++..|+|||+-||-+|+ . |.+|-+-+ ...+.
T Consensus 8 ~~l~~G~~~~~~Lt~eEA~~~~~~il---------~g~~~~~qi~AfL~alr~Kg---E-----T~eElaG~---~~a~~ 67 (317)
T PRK08136 8 KEIGRGKNGARDLDRDTARALYGAML---------DGRVPDLELGAILIALRIKG---E-----SEAEMLGF---LDAMQ 67 (317)
T ss_pred HHHHCCCCCCCCcCHHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHhC---C-----CHHHHHHH---HHHHH
Confidence 36788999999999999999999977 24678889999999999999 5 65655433 33222
Q ss_pred hh-----CCCc---eEEEeCCCCcccccCCCC-----------CCCC--CCCCCcc--CcHHHHHHHHhcCCCCCHHHHH
Q 009818 178 RA-----LPPD---VIFIADPEGSIMGGGGSI-----------GPHY--SGNDPRE--MRLVGALREVLAGGHLGYEEVQ 234 (524)
Q Consensus 178 ~~-----lp~~---~~f~a~p~G~iMg~~~~~-----------g~~~--~~~~~~~--m~l~~~L~kL~~G~~Ls~eEA~ 234 (524)
+. .|.+ ..-++..+|+-- ...+ |+.- .|++... ..-.+++++++---+++.+++.
T Consensus 68 ~~~~~~~~~~~~~~~iD~~gtgGd~~--t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~~ 145 (317)
T PRK08136 68 AHTIPLTPPAGRPMPVVIPSYNGARK--QANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQAQ 145 (317)
T ss_pred HhCCcCCCCCCCCceEEeCCCCCCCC--CcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHHH
Confidence 21 1211 344455666521 1111 2210 1222211 2358889999877789999999
Q ss_pred HHHHHh
Q 009818 235 GVLRDV 240 (524)
Q Consensus 235 ~a~~~I 240 (524)
+.++..
T Consensus 146 ~~l~~~ 151 (317)
T PRK08136 146 AKLAEG 151 (317)
T ss_pred HHHHhc
Confidence 999863
No 62
>PRK08250 glutamine amidotransferase; Provisional
Probab=92.81 E-value=0.092 Score=52.38 Aligned_cols=111 Identities=11% Similarity=-0.072 Sum_probs=64.8
Q ss_pred cceeeCCCCCCCCCh--hhh----hhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH--
Q 009818 98 AKVCTGPTQTRPLRE--DEA----FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-- 167 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~--~~a----~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~-- 167 (524)
.-|+++-++..|-.. +.- ....+. ||.+ ....|.+| |.|+|.++..|||.+.+. ..++.|.. +.+.+
T Consensus 47 d~vii~GGp~~~~~~~~~~p~~~~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~~e~G~~-~v~lt~~ 123 (235)
T PRK08250 47 DLLIVMGGPQSPRTTREECPYFDSKAEQRL-INQAIKAGKAVIGVCLGAQLIGEALGAKYEHS-PEKEIGYF-PITLTEA 123 (235)
T ss_pred CEEEECCCCCChhhccccccccchHHHHHH-HHHHHHcCCCEEEEChhHHHHHHHhCceeccC-CCCceeEE-EEEEccc
Confidence 346666666665421 111 122333 6655 45899999 999999999999999987 33444432 22221
Q ss_pred -----HHHhhhhHhh--------hhCCCceEEEe-CCCCcccccCCCC---CCCCCCCCCc
Q 009818 168 -----AMNTFWPLLM--------RALPPDVIFIA-DPEGSIMGGGGSI---GPHYSGNDPR 211 (524)
Q Consensus 168 -----~~~~~~~~l~--------~~lp~~~~f~a-~p~G~iMg~~~~~---g~~~~~~~~~ 211 (524)
++..+...+. -.||+....+| ++...+.+.+... |++|.|.-..
T Consensus 124 g~~d~l~~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~~~qa~~~~~~~~g~QfHPE~~~ 184 (235)
T PRK08250 124 GLKDPLLSHFGSTLTVGHWHNDMPGLTDQAKVLATSEGCPRQIVQYSNLVYGFQCHMEFTV 184 (235)
T ss_pred cccCchhhcCCCCcEEEEEecceecCCCCCEEEECCCCCCceEEEeCCCEEEEeecCcCCH
Confidence 2222222221 36888888887 5545566666543 7788554333
No 63
>PRK09071 hypothetical protein; Validated
Probab=91.75 E-value=1.2 Score=47.03 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=74.4
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhh
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM 177 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~ 177 (524)
.+|+.|+...|+|+.|||..+++.|+. |.++..|+|||+-|+-+|+ . |.+|-+.+..--....
T Consensus 9 k~vg~gk~~~~~Lt~eEa~~~~~~il~---------g~~~~~q~aAfL~alr~kg---e-----T~eEi~g~~~a~r~~~ 71 (323)
T PRK09071 9 RILGKGKRGRRSLTREEARQAMGMILD---------GEVEDDQLGAFLMLLRVKE---E-----TAEELAGFVEAIRERL 71 (323)
T ss_pred HHHcCCCCCCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhc
Confidence 468899999999999999999998762 3667789999999999999 5 6666554433211111
Q ss_pred hhCCCceEEEeC-CCCcccccCCCCCCCC-----------------CCC-CCccCc--HHHHHHHHhcCCCCCHHHHHHH
Q 009818 178 RALPPDVIFIAD-PEGSIMGGGGSIGPHY-----------------SGN-DPREMR--LVGALREVLAGGHLGYEEVQGV 236 (524)
Q Consensus 178 ~~lp~~~~f~a~-p~G~iMg~~~~~g~~~-----------------~~~-~~~~m~--l~~~L~kL~~G~~Ls~eEA~~a 236 (524)
..+|.+. ..| +- |.+.+-..+| .|+ ..+..+ -.++|+.++---+++.+++...
T Consensus 72 ~~~~~~~--~iD~~~----gtG~d~~~~~~~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~~~ 145 (323)
T PRK09071 72 QAPPLAV--DLDWPS----YAGKRRHLPWYLLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAEQA 145 (323)
T ss_pred ccCCCCC--ceecCC----cCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHHHH
Confidence 1222111 111 11 1111111111 122 223333 6788888866668889999888
Q ss_pred HHHh
Q 009818 237 LRDV 240 (524)
Q Consensus 237 ~~~I 240 (524)
++..
T Consensus 146 l~~~ 149 (323)
T PRK09071 146 LEEH 149 (323)
T ss_pred HHhc
Confidence 8864
No 64
>PRK07053 glutamine amidotransferase; Provisional
Probab=91.43 E-value=0.53 Score=47.08 Aligned_cols=112 Identities=9% Similarity=0.033 Sum_probs=62.2
Q ss_pred eeeCCCCCCCCChhh---hhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcC----CH-HHHHHH
Q 009818 100 VCTGPTQTRPLREDE---AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQW----SE-GERRAM 169 (524)
Q Consensus 100 v~~gp~~~~P~~~~~---a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~----s~-~e~~~~ 169 (524)
|++..++..+-++++ -...++. ||.+ ....|.+| |+|||.|+..+|+.+.+. ..++-|-. ++ +...-+
T Consensus 51 lii~Ggp~~~~d~~~~p~~~~~~~~-i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-~~~e~G~~~i~~t~~g~~~pl 128 (234)
T PRK07053 51 LVVLGGPIGVYDDELYPFLAPEIAL-LRQRLAAGLPTLGICLGAQLIARALGARVYPG-GQKEIGWAPLTLTDAGRASPL 128 (234)
T ss_pred EEECCCCCCCCCCCcCCcHHHHHHH-HHHHHHCCCCEEEECccHHHHHHHcCCcEecC-CCCeEeEEEEEEeccccCChh
Confidence 555556665554322 1234455 5543 45899999 999999999999999885 33332211 11 111111
Q ss_pred HhhhhHh--------hhhCCCceEEEe-CCCCcccccCCC--C-CCCCCCCCCccC
Q 009818 170 NTFWPLL--------MRALPPDVIFIA-DPEGSIMGGGGS--I-GPHYSGNDPREM 213 (524)
Q Consensus 170 ~~~~~~l--------~~~lp~~~~f~a-~p~G~iMg~~~~--~-g~~~~~~~~~~m 213 (524)
..+.+.. .-.||+....+| ++.....+.+.. + |++|.|.-..++
T Consensus 129 ~~~~~~~~~~~~H~d~~~lP~ga~~La~s~~~~~qaf~~g~~~~g~QfHpE~~~~~ 184 (234)
T PRK07053 129 RHLGAGTPVLHWHGDTFDLPEGATLLASTPACRHQAFAWGNHVLALQFHPEAREDR 184 (234)
T ss_pred hcCCCcceEEEEeCCEEecCCCCEEEEcCCCCCeeEEEeCCCEEEEeeCccCCHHH
Confidence 1111111 125888888887 555555666542 2 778865544443
No 65
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=91.07 E-value=0.11 Score=50.20 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=51.2
Q ss_pred hHHHHHHHhhcCCCccc-cccHHHHhHH------------HHhhhhccccC-----CCCCcCCHHHHHH----HHhhhhH
Q 009818 118 VLDTILRSAKGDLKDEE-EVSKAQLGAF------------FSAMTIRANAF-----PEATQWSEGERRA----MNTFWPL 175 (524)
Q Consensus 118 ~~~~~l~~~~~~l~~~~-~~~~~q~gaf------------fga~~~r~~~~-----~~~~~~s~~e~~~----~~~~~~~ 175 (524)
.++.|.+......|.+| |.|+|.++-. +++.+.|. +. ..|..|++.+.+. +..+...
T Consensus 61 ~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~-~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~ 139 (205)
T PRK13141 61 LDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRF-PPEEGLKVPHMGWNQLELKKESPLLKGIPDG 139 (205)
T ss_pred hHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEc-CCCCCCcccEecCccceeCCCChhhhCCCCC
Confidence 45664444457899999 9999999986 67888886 21 2344555333221 1111110
Q ss_pred --------hhhhCCCceEEEe-CCCC-cccccCCCC---CCCCCCCC
Q 009818 176 --------LMRALPPDVIFIA-DPEG-SIMGGGGSI---GPHYSGND 209 (524)
Q Consensus 176 --------l~~~lp~~~~f~a-~p~G-~iMg~~~~~---g~~~~~~~ 209 (524)
+.-.+|+.+.+++ +++| .++++..+. |++|.|..
T Consensus 140 ~~v~~~Hs~~v~~~~~~~v~a~~~~~~~~~a~~~~~~i~GvQfHPE~ 186 (205)
T PRK13141 140 AYVYFVHSYYADPCDEEYVAATTDYGVEFPAAVGKDNVFGAQFHPEK 186 (205)
T ss_pred CEEEEECeeEeccCCcCeEEEEEeCCcEEEEEEecCCEEEEeCCCcc
Confidence 0013455566666 5555 566664433 77885543
No 66
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=90.70 E-value=0.28 Score=47.36 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=27.9
Q ss_pred HHHHHH-HhhcCCCccc-cccHHHHhHH------------HHhhhhcc
Q 009818 119 LDTILR-SAKGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (524)
Q Consensus 119 ~~~~l~-~~~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (524)
++.+++ .+..+.|+++ |.|+|.|+-. |++.+.|.
T Consensus 60 ~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~ 107 (196)
T TIGR01855 60 LDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKL 107 (196)
T ss_pred cHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEEC
Confidence 566546 4467799999 9999999998 78998887
No 67
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=90.62 E-value=0.24 Score=47.66 Aligned_cols=55 Identities=7% Similarity=-0.163 Sum_probs=38.1
Q ss_pred cceeeCCCCCCCCChhhh---hhhHHHHHHHhhcCCCccc-cccHHHHhHH-----------HHhhhhcc
Q 009818 98 AKVCTGPTQTRPLREDEA---FKVLDTILRSAKGDLKDEE-EVSKAQLGAF-----------FSAMTIRA 152 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a---~~~~~~~l~~~~~~l~~~~-~~~~~q~gaf-----------fga~~~r~ 152 (524)
....|.||++.|-...+. ....+.|.+......|++| |+|+|.|+.. +++.+.|.
T Consensus 38 ~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~ 107 (199)
T PRK13181 38 ADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRF 107 (199)
T ss_pred CCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEc
Confidence 444566888776422111 1235664444567899999 9999999998 78899886
No 68
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=89.51 E-value=0.25 Score=48.79 Aligned_cols=47 Identities=11% Similarity=-0.176 Sum_probs=34.2
Q ss_pred ccceeeCCCCCCCCChhhhh------hhHHHHHHHhhcCCCccc-cccHHHHhHHHH
Q 009818 97 QAKVCTGPTQTRPLREDEAF------KVLDTILRSAKGDLKDEE-EVSKAQLGAFFS 146 (524)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~a~------~~~~~~l~~~~~~l~~~~-~~~~~q~gaffg 146 (524)
++..+|.||++.|- .+. ..++.|.+......|.+| |+|+|.|+-.++
T Consensus 39 ~~d~iIlPG~g~~~---~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~ 92 (210)
T CHL00188 39 QVHALVLPGVGSFD---LAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSE 92 (210)
T ss_pred hCCEEEECCCCchH---HHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccc
Confidence 35567789998875 332 234666666778899999 999999987543
No 69
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=89.07 E-value=2.8 Score=35.28 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 009818 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLA 280 (524)
Q Consensus 215 l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~A 280 (524)
++++|++|-+|+ +.++.+.-|...+ +++|+.+|+..=-.|=.-|.+++|+.-+|+.
T Consensus 2 LK~ii~~Lh~G~--~~e~vk~~F~~~~--------~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 2 LKEIIKRLHEGE--DPEEVKEEFKKLF--------SDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 789999999997 7899999999999 7899999999988888899999999999874
No 70
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=88.89 E-value=0.21 Score=48.30 Aligned_cols=42 Identities=14% Similarity=-0.034 Sum_probs=30.3
Q ss_pred ceeeCCCCCCCCChhhhhhhH------HHHHHHh-hcCCCccc-cccHHHHhHH
Q 009818 99 KVCTGPTQTRPLREDEAFKVL------DTILRSA-KGDLKDEE-EVSKAQLGAF 144 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a~~~~------~~~l~~~-~~~l~~~~-~~~~~q~gaf 144 (524)
.|++ ||++.|. ++.+.+ +.|.+.+ ...+|++| |+|.|.|.-.
T Consensus 40 ~lil-PG~g~~~---~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 40 KLLL-PGVGSFK---EAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred EEEE-CCCCchH---HHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 3666 9999886 554443 5544433 45899999 9999999976
No 71
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=88.85 E-value=0.5 Score=48.40 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=36.8
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhc------CCCccc-cccHHHHhHHHHhh-hhccccCCCCCcC
Q 009818 100 VCTGPTQTRPLREDEAFKVLDTILRSAKG------DLKDEE-EVSKAQLGAFFSAM-TIRANAFPEATQW 161 (524)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~------~l~~~~-~~~~~q~gaffga~-~~r~~~~~~~~~~ 161 (524)
|++ ||+.....+....+....|++.+.. .+|+.| |+|.|.|...+|+. .++. .++.++.|
T Consensus 58 ~l~-~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~-~~~~~~~~ 125 (273)
T cd01747 58 ILF-PGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLE-ATEATNSA 125 (273)
T ss_pred EEE-CCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccC-CCccccce
Confidence 444 5544444322333444444444432 289999 99999999999996 4444 56666654
No 72
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=88.54 E-value=0.41 Score=46.36 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=30.5
Q ss_pred ceeeCCCCCCCCChhhh---hhhHHHHHHHhhcCCCccc-cccHHHHhHHH
Q 009818 99 KVCTGPTQTRPLREDEA---FKVLDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~a---~~~~~~~l~~~~~~l~~~~-~~~~~q~gaff 145 (524)
.|++ ||++.|.+.-+. ...++. |+++ ..|++| |+|+|.|+-.+
T Consensus 41 ~iIl-PG~G~~~~~~~~l~~~~l~~~-i~~~--~~PilGIClG~Qll~~~~ 87 (196)
T PRK13170 41 KLFL-PGVGTAQAAMDQLRERELIDL-IKAC--TQPVLGICLGMQLLGERS 87 (196)
T ss_pred EEEE-CCCCchHHHHHHHHHcChHHH-HHHc--CCCEEEECHHHHHHhhhc
Confidence 4666 999999832221 223455 4444 589999 99999999988
No 73
>PRK07394 hypothetical protein; Provisional
Probab=88.06 E-value=4.1 Score=43.27 Aligned_cols=54 Identities=33% Similarity=0.481 Sum_probs=44.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA 168 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~ 168 (524)
.+|+.||...|+|+.|||..+++.|+. |.+++.|+|||+-||-+|+ . |.+|-+.
T Consensus 10 ~~l~~g~~~~~~Lt~eea~~~~~~il~---------g~~~~~q~aAfL~alr~KG---E-----T~eEiaG 63 (342)
T PRK07394 10 KKVGSGEHTSKDLTREEAADALKLMLL---------GEATPAQIGAFLIAHRIKR---P-----TPEELAG 63 (342)
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHhhC---C-----CHHHHHH
Confidence 367889999999999999988888653 3677889999999999999 4 6666444
No 74
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=85.85 E-value=0.49 Score=46.51 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=62.3
Q ss_pred ceeeCCCCCCCCChhh--hhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHH-----HHH
Q 009818 99 KVCTGPTQTRPLREDE--AFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERR-----AMN 170 (524)
Q Consensus 99 ~v~~gp~~~~P~~~~~--a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~-----~~~ 170 (524)
-|+++=+|.-.. +++ +..+.+.|.+...-.-|++| |+|||.|..++|+++-++++ +.--|.+-+.. +.+
T Consensus 48 giIlsGgp~sv~-~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~--~E~G~~~v~~~~~~~~l~~ 124 (198)
T COG0518 48 GIIISGGPMSVY-DEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPK--REIGWTPVELTEGDDPLFA 124 (198)
T ss_pred EEEEcCCCCCCc-cccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCC--CccceEEEEEecCcccccc
Confidence 355544443333 444 77777775444444457999 99999999999999999943 23333333332 122
Q ss_pred hhhhHh----------hhhCCCceEEEeCCCCc-ccccCCC-C--CCCCCC
Q 009818 171 TFWPLL----------MRALPPDVIFIADPEGS-IMGGGGS-I--GPHYSG 207 (524)
Q Consensus 171 ~~~~~l----------~~~lp~~~~f~a~p~G~-iMg~~~~-~--g~~~~~ 207 (524)
-+.+.. |..||+.+.++|..+.. +=+.++. . |++|.|
T Consensus 125 gl~~~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~~~~~gvQFHp 175 (198)
T COG0518 125 GLPDLFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRYGKRAYGVQFHP 175 (198)
T ss_pred CCccccCccccchhCccccCCCCCEEEecCCCChhhheecCCcEEEEeeee
Confidence 111111 24699999999854433 3333332 2 778844
No 75
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=85.55 E-value=0.36 Score=46.33 Aligned_cols=51 Identities=10% Similarity=-0.051 Sum_probs=34.5
Q ss_pred eeeCCCCCCCCChh---hhhhhHHHHHHHh-hcCCCccc-cccHHHHhHH------------HHhhhhcc
Q 009818 100 VCTGPTQTRPLRED---EAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (524)
Q Consensus 100 v~~gp~~~~P~~~~---~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (524)
|++ ||++.|-... ......+. |+++ ....|+++ |.|+|.|+-. |++.+.+.
T Consensus 40 iii-pG~~~~~~~~~~~~~~~~~~~-i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (198)
T cd01748 40 LIL-PGVGAFGDAMANLRERGLIEA-LKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRF 107 (198)
T ss_pred EEE-CCCCcHHHHHHHHHHcChHHH-HHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEEC
Confidence 444 7766553110 01234566 5554 57899999 9999999997 88999886
No 76
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=85.05 E-value=1.4 Score=35.59 Aligned_cols=46 Identities=33% Similarity=0.460 Sum_probs=29.8
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHH
Q 009818 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAM 169 (524)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~ 169 (524)
+++|+.||+..+++.|+. |.++..|+|||..|+-+|+ . |.+|-..+
T Consensus 12 g~~Ls~~e~~~~~~~i~~---------g~~s~~qiaAfL~al~~kg---e-----t~~Eiag~ 57 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAILD---------GEVSDAQIAAFLMALRMKG---E-----TPEEIAGF 57 (66)
T ss_dssp T----HHHHHHHHHHHHT---------TSS-HHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---c-----CHHHHHHH
Confidence 489999998888888542 3677889999999999999 4 66665543
No 77
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.65 E-value=24 Score=38.62 Aligned_cols=208 Identities=12% Similarity=0.019 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhhCCCCC
Q 009818 215 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR--ELKAYCLAFDDELGPPP 289 (524)
Q Consensus 215 l~~~L~kL~~G~---~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~e--ELaG~a~Amre~~~~~~ 289 (524)
++..|..+..+. ....+....+.+.++ .-++++.-+-.++-.++.+....+ -...+.+.+.+.....+
T Consensus 142 lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~-------~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 214 (424)
T PRK05703 142 LKNLLEDQLSGLRQVERIPPEFAELYKRLK-------RSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRV 214 (424)
T ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccc
Confidence 555555555442 222344556667777 677888888888887776654433 34455555555443221
Q ss_pred ---CCCCCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHH----HhCCCCC--CCCHHH
Q 009818 290 ---VADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVLQ 360 (524)
Q Consensus 290 ---~~~~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVL----EaLGi~i--~lspe~ 360 (524)
......+-++|.+|-|++|+-...+ +.+.....|.+|+.=--+. -+.|. .+.| +.+|+++ ..++++
T Consensus 215 ~~~~~~~~~i~~vGptGvGKTTt~~kLA-~~~~~~~~g~~V~li~~D~--~r~~a--~eqL~~~a~~~~vp~~~~~~~~~ 289 (424)
T PRK05703 215 EDILKQGGVVALVGPTGVGKTTTLAKLA-ARYALLYGKKKVALITLDT--YRIGA--VEQLKTYAKIMGIPVEVVYDPKE 289 (424)
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHH-HHHHHhcCCCeEEEEECCc--cHHHH--HHHHHHHHHHhCCceEccCCHHh
Confidence 1112467799999999976322222 1111123466776554332 12233 3333 3478775 456677
Q ss_pred HHHHHHhc-CCcEEEEcccccChh-hhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEec-cCCcchHHHHHHHHH
Q 009818 361 AKELLEDE-EIGFAYVSLREARPS-LYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGF-YHEGYEEPLLMLMKR 437 (524)
Q Consensus 361 a~~~Lee~-~~GfaFLfAp~~hPa-m~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGV-fh~~~~~~~A~al~~ 437 (524)
..+.+++. +.-+.+++.+-+.+. ...+..+++-+.. ..++.. .+.|+.. +...-+..+.+.++.
T Consensus 290 l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~---~~~~~~----------~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 290 LAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEF---SGEPID----------VYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc---cCCCCe----------EEEEEECCCCHHHHHHHHHHhCC
Confidence 66666542 256788888876654 2233334443331 112212 2444444 333455566677777
Q ss_pred cCCCEEEEEE
Q 009818 438 RGVHSGLVVK 447 (524)
Q Consensus 438 lG~~~alVV~ 447 (524)
++..+.++-|
T Consensus 357 ~~~~~vI~TK 366 (424)
T PRK05703 357 LPLDGLIFTK 366 (424)
T ss_pred CCCCEEEEec
Confidence 8875444434
No 78
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=77.71 E-value=13 Score=39.72 Aligned_cols=112 Identities=27% Similarity=0.335 Sum_probs=67.4
Q ss_pred CCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhhhhCCCceEEE
Q 009818 108 RPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFI 187 (524)
Q Consensus 108 ~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~~~lp~~~~f~ 187 (524)
++|+.|||...++.|+. |.++..|+|||..|+-+|+ . |++|-.-+..--......+|.+..-
T Consensus 15 ~~L~~~eA~~l~~~il~---------g~~~~~qi~A~L~Alr~Kg---e-----t~eEi~G~~~am~~~~~~~~~p~~~- 76 (338)
T COG0547 15 RDLDREEARELFKAILS---------GEASPAQIGAFLTALRIKG---E-----TPEEIAGFAEAMREHAPKLPVPAAD- 76 (338)
T ss_pred CCCCHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHhc---C-----CHHHHHHHHHHHHHhcccCCCCCCC-
Confidence 89999999999999775 4677889999999999999 5 6666543332211111122211110
Q ss_pred eCCCCcccccCCCC-----------------CCCC--CCCCC-ccCc-HHHHHHHHhcCCCCCHHHHHHHHHHh
Q 009818 188 ADPEGSIMGGGGSI-----------------GPHY--SGNDP-REMR-LVGALREVLAGGHLGYEEVQGVLRDV 240 (524)
Q Consensus 188 a~p~G~iMg~~~~~-----------------g~~~--~~~~~-~~m~-l~~~L~kL~~G~~Ls~eEA~~a~~~I 240 (524)
+ =||-|.+++- |+.- .|++. +.++ -.++++.++-.-+++.+++++.++..
T Consensus 77 --~-vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~~l~~~ 147 (338)
T COG0547 77 --P-VDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAARALEET 147 (338)
T ss_pred --C-CCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHHHHHhc
Confidence 0 1233333221 2211 12221 2221 47888888887788999999998876
No 79
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=77.02 E-value=13 Score=41.88 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=37.4
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHH
Q 009818 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMN 170 (524)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~ 170 (524)
.+|+|+.|||...++.|+. |.+++.|+|||+.|+-+|+ . |.+|-+.+.
T Consensus 209 ~~~~Lt~eea~~~~~~il~---------g~~~~~qi~AfL~alr~kg---e-----t~eEl~g~~ 256 (531)
T PRK09522 209 QAQTLSQQESHQLFSAVVR---------GELKPEQLAAALVSMKIRG---E-----HPNEIAGAA 256 (531)
T ss_pred cCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHH
Confidence 5789999998888777542 3678899999999999999 5 666655443
No 80
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=76.86 E-value=0.82 Score=44.06 Aligned_cols=121 Identities=13% Similarity=0.084 Sum_probs=66.9
Q ss_pred hhhccceeeCCCCCCCCCh-hhhhhhHHHHHHH-hhcCCCccc-cccHHHHhHHHH-----------hhhhccccCCCCC
Q 009818 94 LEAQAKVCTGPTQTRPLRE-DEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFS-----------AMTIRANAFPEAT 159 (524)
Q Consensus 94 ~~~~~~v~~gp~~~~P~~~-~~a~~~~~~~l~~-~~~~l~~~~-~~~~~q~gaffg-----------a~~~r~~~~~~~~ 159 (524)
-+.++-|..| +++.-... .......+. ||+ .....|+++ |.|+|.|+-.+. +.+.|. .|-+..
T Consensus 35 ~~~d~liipG-G~~~~~~~l~~~~~l~~~-i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~-~~g~~~ 111 (184)
T TIGR03800 35 DEIDGLIIPG-GESTTLSRLLDKYGMFEP-LRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERN-AYGRQV 111 (184)
T ss_pred ccCCEEEECC-CCHHHHHHHHHhccHHHH-HHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEee-ccCCcc
Confidence 3456666666 32221100 011234455 554 456799999 999999998872 455443 443222
Q ss_pred cCCHHHHH--------HHHhhhh-HhhhhCCCceEEEeCCCCcccccCCCC--CCCCCCCCCccCcHHH
Q 009818 160 QWSEGERR--------AMNTFWP-LLMRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRLVG 217 (524)
Q Consensus 160 ~~s~~e~~--------~~~~~~~-~l~~~lp~~~~f~a~p~G~iMg~~~~~--g~~~~~~~~~~m~l~~ 217 (524)
.+.+.+.+ ++..|.. -.+..+|+.+.++|..++.+-+.+... |++|.|......++.+
T Consensus 112 ~s~~~~l~~~~~~~~~~~~~~~h~~~v~~lp~~~~vla~~~~~~~a~~~~~~~gvQfHPE~~~~~~~~~ 180 (184)
T TIGR03800 112 DSFEAEVDIKGVGDDPITGVFIRAPKIVSVGNGVEILAKVGNRIVAVRQGNILVSSFHPELTDDHRVHE 180 (184)
T ss_pred ccEEEEeecccCCCCcceEEEEcCCCcccCCCCeEEEEEeCCeeEEEEeCCEEEEEeCCccCCCchHHH
Confidence 22211100 1111211 134679999999997777886766553 7888776555444433
No 81
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=74.80 E-value=1.3 Score=42.21 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCCccc-cccHHHHhHHHHh------------hhhccccCCCCCcCCHHHHHH-------HH-hhhhH-h
Q 009818 119 LDTILRSAKGDLKDEE-EVSKAQLGAFFSA------------MTIRANAFPEATQWSEGERRA-------MN-TFWPL-L 176 (524)
Q Consensus 119 ~~~~l~~~~~~l~~~~-~~~~~q~gaffga------------~~~r~~~~~~~~~~s~~e~~~-------~~-~~~~~-l 176 (524)
.+.|.+......|.+| |.|+|.|+..+++ .+.|. .|.+.-.|.+..... +. .++.+ .
T Consensus 59 ~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~-~~g~~~g~~~~~l~~~~~~~~~~~~~~~h~~~ 137 (183)
T cd01749 59 LDPLREFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRN-AFGRQVDSFEADLDIPGLGLGPFPAVFIRAPV 137 (183)
T ss_pred HHHHHHHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEee-ccccccceEEEcCCCCcCCCCccEEEEEECcE
Confidence 4443344456899999 9999999999998 55553 554444443222210 11 11111 2
Q ss_pred hhhCCCceEEEeCCCCcccccCCCC--CCCCCCCCCccCcHHHH
Q 009818 177 MRALPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRLVGA 218 (524)
Q Consensus 177 ~~~lp~~~~f~a~p~G~iMg~~~~~--g~~~~~~~~~~m~l~~~ 218 (524)
+..+|++..++|..|+.+-+.+.+. |.+|.|.-..+..+.++
T Consensus 138 v~~~p~~~~~la~~~~~~~a~~~~~~~g~qfHPE~~~~~~~~~~ 181 (183)
T cd01749 138 IEEVGPGVEVLAEYDGKIVAVRQGNVLATSFHPELTDDTRIHEY 181 (183)
T ss_pred EEEcCCCcEEEEecCCEEEEEEECCEEEEEcCCccCCCcchhhh
Confidence 2578999999986566655665443 77887776665555443
No 82
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=74.05 E-value=4.9 Score=42.43 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=37.0
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHH
Q 009818 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRA 168 (524)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~ 168 (524)
++|+|+.|||...++.|+. +.++..|+|||+-|+-+|. . |++|-+.
T Consensus 12 ~g~~Lt~~Ea~~~~~~il~---------g~~~~~q~~AfL~alr~kg---e-----t~~El~g 57 (339)
T PRK00188 12 EGEDLSEEEAEELMDAIMS---------GEATPAQIAAFLTALRVKG---E-----TVDEIAG 57 (339)
T ss_pred CCCCCCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhC---C-----CHHHHHH
Confidence 3599999999998888762 3677889999999999999 4 5565544
No 83
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=73.91 E-value=17 Score=40.75 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=36.0
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHH
Q 009818 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMN 170 (524)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~ 170 (524)
+++|+.|||...++.|+ + |.++..|+|||+-||-+|+ . |.+|-+.+.
T Consensus 205 g~~Lt~~ea~~~~~~il--------~-g~~~~~q~~AfL~alr~kg---e-----t~~El~g~~ 251 (534)
T PRK14607 205 GEDLSFEEAEDVMEDIT--------D-GNATDAQIAGFLTALRMKG---E-----TADELAGFA 251 (534)
T ss_pred CCCCCHHHHHHHHHHHH--------c-CCCCHHHHHHHHHHHHHhC---C-----CHHHHHHHH
Confidence 45999999888887755 2 3677889999999999999 4 666655443
No 84
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=72.23 E-value=4.8 Score=40.49 Aligned_cols=55 Identities=5% Similarity=-0.118 Sum_probs=40.0
Q ss_pred hhhhccceeeCCCCCCCCChhhhhhhHHHHHHHh-hcCCCccc-cccHHHHhHHHHhhhhcc
Q 009818 93 LLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRA 152 (524)
Q Consensus 93 ~~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~-~~~l~~~~-~~~~~q~gaffga~~~r~ 152 (524)
.|+.--.|+++++++.|-. . ..++. ++.+ ...+|.+| |+|+|.+...||+.+.+-
T Consensus 52 ~l~~~dgivl~GG~~~~~~---~-~~~~~-i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~ 108 (235)
T cd01746 52 ALKGADGILVPGGFGIRGV---E-GKILA-IKYARENNIPFLGICLGMQLAVIEFARNVLGL 108 (235)
T ss_pred hhccCCEEEECCCCCCcch---h-hHHHH-HHHHHHCCceEEEEEhHHHHHHHHHHHHhcCC
Confidence 3444456778778887763 2 33555 4444 46899999 999999999999998764
No 85
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=69.45 E-value=3.6 Score=40.60 Aligned_cols=47 Identities=13% Similarity=-0.098 Sum_probs=35.8
Q ss_pred ccceeeCCCCCCCCChhhhh------hhHHHHHHHhhcCCCccc-cccHHHHhHHHH
Q 009818 97 QAKVCTGPTQTRPLREDEAF------KVLDTILRSAKGDLKDEE-EVSKAQLGAFFS 146 (524)
Q Consensus 97 ~~~v~~gp~~~~P~~~~~a~------~~~~~~l~~~~~~l~~~~-~~~~~q~gaffg 146 (524)
++...|-||++.+- .|. ...+.|++....+.|++| |+|+|.|+...+
T Consensus 37 ~~d~iIlPG~g~~~---~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 37 NSKALILPGDGHFD---KAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90 (210)
T ss_pred cCCEEEECCCCchH---HHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence 45567789998774 332 356666777788999999 999999998765
No 86
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.58 E-value=1.5e+02 Score=32.92 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=82.2
Q ss_pred CeeEEcCCCCCCCccccchHHHHHHH----hccCCeEEeecCCCCCCCCCC--CHHHHHHhCCCCCCC--CHHHHHHHHH
Q 009818 295 SLTHYGEPYDGNTRFFRSTLFVAAVR----SCYGESCLLHGAEWMPPKGGV--TEEQMLKFMGASTNL--SVLQAKELLE 366 (524)
Q Consensus 295 ~vDi~GTGGDG~~tfNiST~laA~Vl----Aa~Gv~VaKHGnRavsSksGS--t~aDVLEaLGi~i~l--spe~a~~~Le 366 (524)
.+-++|.+|-|++| . ++.++ ...|.+|..-..+..-+ ++ .+....+.+|+++.. ++..+.+.++
T Consensus 225 vi~lvGptGvGKTT-----t-aaKLA~~~~~~~G~~V~Lit~Dt~R~--aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~ 296 (432)
T PRK12724 225 VVFFVGPTGSGKTT-----S-IAKLAAKYFLHMGKSVSLYTTDNYRI--AAIEQLKRYADTMGMPFYPVKDIKKFKETLA 296 (432)
T ss_pred EEEEECCCCCCHHH-----H-HHHHHHHHHHhcCCeEEEecccchhh--hHHHHHHHHHHhcCCCeeehHHHHHHHHHHH
Confidence 46689999999975 2 33333 24577787666554332 33 112223567887532 2455565665
Q ss_pred hcCCcEEEEcccccCh-hhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEe-ccCCcchHHHHHHHHHcCCCEEE
Q 009818 367 DEEIGFAYVSLREARP-SLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAG-FYHEGYEEPLLMLMKRRGVHSGL 444 (524)
Q Consensus 367 e~~~GfaFLfAp~~hP-am~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViG-Vfh~~~~~~~A~al~~lG~~~al 444 (524)
+.+.-+.+++.+-+.| ....+-.+.+.+..-.+-... ..+.|+. .+...-...+++.++.+|+++.+
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~-----------e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSV-----------ENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCC-----------eEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 4346677888776653 333344444433321111111 1244444 44444666777788889986666
Q ss_pred EEEcCCCceeecCCCcccc--eEeecccccc
Q 009818 445 VVKGEEGALSMTTRLRSVN--ASKGLPVNYC 473 (524)
Q Consensus 445 VV~G~eG~DEiS~~~~~~t--~v~g~~~~~~ 473 (524)
+-| +||-+--|..-+ ...++|+.|+
T Consensus 366 lTK----LDEt~~~G~il~i~~~~~lPI~yl 392 (432)
T PRK12724 366 LTK----LDEADFLGSFLELADTYSKSFTYL 392 (432)
T ss_pred EEc----ccCCCCccHHHHHHHHHCCCEEEE
Confidence 655 445332222111 1145677776
No 87
>PLN02641 anthranilate phosphoribosyltransferase
Probab=63.53 E-value=55 Score=35.04 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhhhh---CCCc
Q 009818 107 TRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRA---LPPD 183 (524)
Q Consensus 107 ~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~~~---lp~~ 183 (524)
+++|+.|||..+++.|+. + +++.|+|||+-|+-+|+ . |.+|-+.+ ...+.+. +|..
T Consensus 14 g~~Lt~eEa~~~~~~il~---------~-~~~~qigAfL~alr~kg---e-----t~eEiag~---~~a~~~~~~~~~~~ 72 (343)
T PLN02641 14 GTDLTEEEAEAALDFLLD---------D-ADEAQISAFLVLLRAKG---E-----TFEEIAGL---ARAMIKRARKVDGL 72 (343)
T ss_pred CCCCCHHHHHHHHHHHHc---------C-CCHHHHHHHHHHHHHhC---C-----CHHHHHHH---HHHHHHhCCCCCCC
Confidence 349999999999988764 2 35679999999999999 4 55554443 3333322 3210
Q ss_pred eEEEeCCCCcccccCCC---C--------------CCCC--CCCCCcc--CcHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 009818 184 VIFIADPEGSIMGGGGS---I--------------GPHY--SGNDPRE--MRLVGALREVLAGGHLGYEEVQGVLRDV 240 (524)
Q Consensus 184 ~~f~a~p~G~iMg~~~~---~--------------g~~~--~~~~~~~--m~l~~~L~kL~~G~~Ls~eEA~~a~~~I 240 (524)
++.=|+.|.+.+ + |..- .|++-.. .--.++|+.++-.-+++.+++.+.++..
T Consensus 73 -----~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~l~~~ 145 (343)
T PLN02641 73 -----VDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRCVEEV 145 (343)
T ss_pred -----CCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHHHHhc
Confidence 111123333221 1 1100 1221111 2257788888766688888888888864
No 88
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=63.36 E-value=5.7 Score=38.32 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=54.3
Q ss_pred HHHHHHh-hcCCCccc-cccHHHHhHHHHhh----------hhccccCCCCCcCCHHHHH------HHH-hhhhH-hhhh
Q 009818 120 DTILRSA-KGDLKDEE-EVSKAQLGAFFSAM----------TIRANAFPEATQWSEGERR------AMN-TFWPL-LMRA 179 (524)
Q Consensus 120 ~~~l~~~-~~~l~~~~-~~~~~q~gaffga~----------~~r~~~~~~~~~~s~~e~~------~~~-~~~~~-l~~~ 179 (524)
+. +|++ ....|+++ |.|+|-|+-.+|+. .++.|.+.+...+.+.+-. .+. .+|-. .+..
T Consensus 63 ~~-i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~H~d~v~~ 141 (189)
T PRK13525 63 EP-LREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGEPFPAVFIRAPYIEE 141 (189)
T ss_pred HH-HHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccCCCCCeEEEEEeCceeec
Confidence 44 5554 45689999 99999999999883 3344455444333321100 011 11221 3367
Q ss_pred CCCceEEEeCCCCcccccCCCC--CCCCCCCCCccCcH
Q 009818 180 LPPDVIFIADPEGSIMGGGGSI--GPHYSGNDPREMRL 215 (524)
Q Consensus 180 lp~~~~f~a~p~G~iMg~~~~~--g~~~~~~~~~~m~l 215 (524)
||+...++|..++.+-+.+.+. |.+|.|.-..+.++
T Consensus 142 lp~~~~vlA~~~~~~~~~~~~~~~g~QfHPE~~~~~~~ 179 (189)
T PRK13525 142 VGPGVEVLATVGGRIVAVRQGNILATSFHPELTDDTRV 179 (189)
T ss_pred cCCCcEEEEEcCCEEEEEEeCCEEEEEeCCccCCCchH
Confidence 9999999984444443444433 77887665555443
No 89
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=61.60 E-value=13 Score=39.15 Aligned_cols=38 Identities=32% Similarity=0.505 Sum_probs=32.5
Q ss_pred CCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhcc
Q 009818 106 QTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRA 152 (524)
Q Consensus 106 ~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~ 152 (524)
.+|+|+.|||..+++.|+. +.++..|+|||.-|+-+|+
T Consensus 6 ~~~~Lt~eEa~~~~~~il~---------g~~~~~q~~AfL~alr~kg 43 (330)
T TIGR01245 6 DGKDLSRDEAEQLMKEIMS---------GEASPAQIAAILAALRIKG 43 (330)
T ss_pred cCCCcCHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC
Confidence 5789999999988888762 3566689999999999999
No 90
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=61.58 E-value=2.2e+02 Score=31.52 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=86.5
Q ss_pred cHHHHHHHHhcCCCCCHHHHHH----HHHHhccCccCCCCCCCCHHHHHHHHHHHHh--cCC------CH-HH-HHHHHH
Q 009818 214 RLVGALREVLAGGHLGYEEVQG----VLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE------TD-RE-LKAYCL 279 (524)
Q Consensus 214 ~l~~~L~kL~~G~~Ls~eEA~~----a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~--KGE------T~-eE-LaG~a~ 279 (524)
++...++++.....||.+...+ +-..++ +.+++...+-.|+-.++- .|+ ++ +. +.-..+
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl-------~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALL-------QADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYE 76 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 3677889998777899985555 444555 678888888888887753 332 22 22 333444
Q ss_pred HHHhhCCCCC----CC-CCCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHH----HHhC
Q 009818 280 AFDDELGPPP----VA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQM----LKFM 350 (524)
Q Consensus 280 Amre~~~~~~----~~-~~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDV----LEaL 350 (524)
.+.+...... .+ .+..+-+||.+|-|++|+-.. .|..+...|.+|+.=-.+...+ +. .|. .+.+
T Consensus 77 ~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaak---LA~~L~~~g~kV~lV~~D~~R~--aa--~eQL~~la~~~ 149 (437)
T PRK00771 77 ELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAK---LARYFKKKGLKVGLVAADTYRP--AA--YDQLKQLAEKI 149 (437)
T ss_pred HHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHH---HHHHHHHcCCeEEEecCCCCCH--HH--HHHHHHHHHHc
Confidence 4444333211 11 123567899999999762211 1122345688888765554332 33 343 3457
Q ss_pred CCCCCC-----CHHH-HHHHHHhc-CCcEEEEcccccCh
Q 009818 351 GASTNL-----SVLQ-AKELLEDE-EIGFAYVSLREARP 382 (524)
Q Consensus 351 Gi~i~l-----spe~-a~~~Lee~-~~GfaFLfAp~~hP 382 (524)
|+++.. ++.. +.+.++.. ..-+..++.+-.|+
T Consensus 150 gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 150 GVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred CCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCccc
Confidence 776432 2222 33333321 14677777775444
No 91
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=58.45 E-value=6 Score=38.77 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=28.3
Q ss_pred hHHHHHHHhh-cCCCccc-cccHHHHhHH------------HHhhhhcc
Q 009818 118 VLDTILRSAK-GDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (524)
Q Consensus 118 ~~~~~l~~~~-~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (524)
..+.|++.+. ...|.+| |+|+|.|+-. +++.+.|.
T Consensus 65 ~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~ 113 (209)
T PRK13146 65 LGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF 113 (209)
T ss_pred cHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence 3556677663 6899999 9999999998 78888875
No 92
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=57.21 E-value=14 Score=37.45 Aligned_cols=170 Identities=13% Similarity=0.002 Sum_probs=88.7
Q ss_pred cccccccCCCCCCChhhhhhccceeeCCCCCCCCChhhhhhhHHHHHHHh-------hcCCCccc-cccHHHHhHHHHhh
Q 009818 77 ISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-------KGDLKDEE-EVSKAQLGAFFSAM 148 (524)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~-------~~~l~~~~-~~~~~q~gaffga~ 148 (524)
+-.+||-.+-.-|...=|+.--.++|+=-. -+||-=.|-|++-| --+.|++| |.|||-+..+-|+.
T Consensus 40 ~wd~frV~~gefP~~~Dl~ky~gfvIsGS~------~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~ 113 (245)
T KOG3179|consen 40 QWDLFRVIDGEFPQEEDLEKYDGFVISGSK------HDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGK 113 (245)
T ss_pred eeEEEEEecCCCCChhhhhhhceEEEeCCc------ccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCc
Confidence 456677776677777767665555554211 23443333333322 23578999 99999999999999
Q ss_pred hhccccCCCCCcCCHHHHHH--HHhhhhHhhhhCCCceEEEeCCCCcccccCC---------CCCC-------CC-CCCC
Q 009818 149 TIRANAFPEATQWSEGERRA--MNTFWPLLMRALPPDVIFIADPEGSIMGGGG---------SIGP-------HY-SGND 209 (524)
Q Consensus 149 ~~r~~~~~~~~~~s~~e~~~--~~~~~~~l~~~lp~~~~f~a~p~G~iMg~~~---------~~g~-------~~-~~~~ 209 (524)
+.|+.+=|.-+--| -+- .+.-+-.+|...|..+-++-|+.-.+.-+.. +--+ ++ -=+.
T Consensus 114 Vgra~KG~~~~lg~---itivk~~~~~~~yFG~~~~~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~~~l~fQG 190 (245)
T KOG3179|consen 114 VGRAPKGPDLGLGS---ITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIEDHLLCFQG 190 (245)
T ss_pred cccCCCCCcccccc---eEEEEecccchhhcccchhhhhHHhhcccceecCCchhhhhccccccceEEEEecceEEEecC
Confidence 99993333111111 000 0111223444444444444222212211111 1100 00 0123
Q ss_pred CccCc---HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHH
Q 009818 210 PREMR---LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIG 263 (524)
Q Consensus 210 ~~~m~---l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLia 263 (524)
.++.+ +.+++.++...+...++.++.+-..+ ....++.|++--+.=
T Consensus 191 HPEyn~eil~~ivdrv~~~k~~~eef~~~ak~~~--------En~~~d~~~~~~icK 239 (245)
T KOG3179|consen 191 HPEYNKEILFEIVDRVLGTKLVEEEFAEKAKKTM--------ENPEPDRQLAVSICK 239 (245)
T ss_pred CchhhHHHHHHHHHHHhcchhhHHHHHHHHHHhh--------hCCCccHHHHHHHHH
Confidence 44443 66777777777776666666666665 455667776654443
No 93
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=56.50 E-value=6.3 Score=38.16 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=24.8
Q ss_pred hHHHHHHHh-hcCCCccc-cccHHHHhHH------------HHhhhhcc
Q 009818 118 VLDTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRA 152 (524)
Q Consensus 118 ~~~~~l~~~-~~~l~~~~-~~~~~q~gaf------------fga~~~r~ 152 (524)
..+. |+++ ....|.++ |.|+|.|+.. +++.+.+.
T Consensus 60 ~~~~-i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (200)
T PRK13143 60 LRDV-ILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF 107 (200)
T ss_pred HHHH-HHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence 3444 6655 45689999 9999999963 67777664
No 94
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.80 E-value=1.4e+02 Score=30.59 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC--C
Q 009818 215 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP--P 289 (524)
Q Consensus 215 l~~~L~kL~~G~---~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~--~ 289 (524)
++.+|+.+..+. .+ .++...+.+.+. ...+++.-+-.++--++......+-...+.+.+.+..... .
T Consensus 116 lk~~l~~~~~~~~~~~~-~~~l~~l~~~L~-------~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 187 (282)
T TIGR03499 116 LRELLERLLAGLAWLQR-DPEGAKLLERLL-------RAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEE 187 (282)
T ss_pred HHHHHHHHHHhhhhccc-CHHHHHHHHHHH-------HCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCcc
Confidence 566666665531 22 245566667777 6778887777777766643222222344556666554311 1
Q ss_pred C---CCCCCeeEEcCCCCCCCccccchHHHHHHH--hcc-C-CeEEeecCCCCCCCCCCCHHHHH----HhCCCCC--CC
Q 009818 290 V---ADVKSLTHYGEPYDGNTRFFRSTLFVAAVR--SCY-G-ESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NL 356 (524)
Q Consensus 290 ~---~~~~~vDi~GTGGDG~~tfNiST~laA~Vl--Aa~-G-v~VaKHGnRavsSksGSt~aDVL----EaLGi~i--~l 356 (524)
. .....+-++|..|-|++|+- +.+.. +.. | .+|..--.+.. +.|. .+-| +.+|+++ ..
T Consensus 188 ~~~~~~~~vi~~vGptGvGKTTt~-----~kLa~~~~~~~g~~~V~li~~D~~--r~~a--~eql~~~~~~~~~p~~~~~ 258 (282)
T TIGR03499 188 DEILEQGGVIALVGPTGVGKTTTL-----AKLAARFVLEHGNKKVALITTDTY--RIGA--VEQLKTYAKILGVPVKVAR 258 (282)
T ss_pred ccccCCCeEEEEECCCCCCHHHHH-----HHHHHHHHHHcCCCeEEEEECCcc--chhH--HHHHHHHHHHhCCceeccC
Confidence 1 12236779999999997522 22222 112 4 77776655532 2233 3333 3377775 35
Q ss_pred CHHHHHHHHHh
Q 009818 357 SVLQAKELLED 367 (524)
Q Consensus 357 spe~a~~~Lee 367 (524)
++.++.+.+++
T Consensus 259 ~~~~l~~~l~~ 269 (282)
T TIGR03499 259 DPKELRKALDR 269 (282)
T ss_pred CHHHHHHHHHH
Confidence 66677777765
No 95
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=54.89 E-value=12 Score=45.13 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=42.9
Q ss_pred eeeCCCCCCCCChhhhhhhHHHHHHHhhcC-CCccc-cccHHHHhHHHHhhhhccccCCCCCc
Q 009818 100 VCTGPTQTRPLREDEAFKVLDTILRSAKGD-LKDEE-EVSKAQLGAFFSAMTIRANAFPEATQ 160 (524)
Q Consensus 100 v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~-l~~~~-~~~~~q~gaffga~~~r~~~~~~~~~ 160 (524)
|-++-||+.|. -.-..++. +|+..++ .|+-| |+|||-++-+.||+|.+- +|=-+|+
T Consensus 214 lflSNGPGdPe---~~~~~v~~-vr~lL~~~~PvfGIClGHQllA~AaGakT~Km-KyGNRGh 271 (1435)
T KOG0370|consen 214 LFLSNGPGDPE---LCPLLVQN-VRELLESNVPVFGICLGHQLLALAAGAKTYKM-KYGNRGH 271 (1435)
T ss_pred EEEeCCCCCch---hhHHHHHH-HHHHHhCCCCeEEEehhhHHHHHhhCCceEEe-eccccCC
Confidence 56788888888 44455666 5555444 99999 999999999999999987 6654444
No 96
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=52.20 E-value=48 Score=34.97 Aligned_cols=104 Identities=17% Similarity=0.035 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC----Cccccc---h--
Q 009818 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRFFRS---T-- 313 (524)
Q Consensus 250 G~~s~~QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGDG~----~tfNiS---T-- 313 (524)
|..|- |..++++|....|++ .+++....++|++.-..+...+ ..+-+-|.|..+. ..+++. +
T Consensus 9 gskS~-~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~-~~~~v~g~~~~~~~~~~~~~~~g~s~~~~ 86 (408)
T cd01554 9 GDKSI-SHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD-GVITIQGVGMAGLKAPQNALNLGNSGTAI 86 (408)
T ss_pred CchHH-HHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC-CEEEEEecCCCCCCCCCceEEccCccHHH
Confidence 43344 446777777777755 5788889999998766554322 2333444443221 122321 2
Q ss_pred -HHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCCC
Q 009818 314 -LFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (524)
Q Consensus 314 -~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~l 356 (524)
.++++ ++..+.+|...|....+.+.-..+.|+|++||+.+..
T Consensus 87 ~~l~a~-~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~ 129 (408)
T cd01554 87 RLISGV-LAGADFEVELFGDDSLSKRPMDRVTLPLKKMGASISG 129 (408)
T ss_pred HHHHHH-HHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEE
Confidence 22222 3333568888999887776555568999999998753
No 97
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.99 E-value=4.9e+02 Score=31.18 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhhCCCCC-----CCCCCCeeEEcC
Q 009818 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYC-LAFDDELGPPP-----VADVKSLTHYGE 301 (524)
Q Consensus 228 Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a-~Amre~~~~~~-----~~~~~~vDi~GT 301 (524)
........+.+.++ +.++++.-+-.|+--++ ++.+.+++...+ +.+.+....+. +.....+-.||.
T Consensus 122 ~~~~~~~~l~~~Ll-------~~dv~~~la~~l~~~l~-~~~~~~~~~~~l~~~L~~~l~il~~~~~~~~~g~Vi~lVGp 193 (767)
T PRK14723 122 GRDPLRASLFRWLL-------GAGFSGQLARALLERLP-VGYDRPAAMAWIRNELATHLPVLRDEDALLAQGGVLALVGP 193 (767)
T ss_pred cChHHHHHHHHHHH-------HCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhhccCCCcccCCCeEEEEECC
Confidence 33333355667777 67788877777776654 334555544443 33333221111 111246779999
Q ss_pred CCCCCCccccchHHHHHHHh----ccC-CeEEeecCCCCCCCCCCCHHHHHH----hCCCCCC--CCHHHHHHHHHhc-C
Q 009818 302 PYDGNTRFFRSTLFVAAVRS----CYG-ESCLLHGAEWMPPKGGVTEEQMLK----FMGASTN--LSVLQAKELLEDE-E 369 (524)
Q Consensus 302 GGDG~~tfNiST~laA~VlA----a~G-v~VaKHGnRavsSksGSt~aDVLE----aLGi~i~--lspe~a~~~Lee~-~ 369 (524)
.|-||+| + .+.+++ ..| .+|..=..+ +.+-|+ .+-|+ .+|+++. .+++++.+.+++. +
T Consensus 194 nGvGKTT-----T-iaKLA~~~~~~~G~kkV~lit~D--t~RigA--~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 194 TGVGKTT-----T-TAKLAARCVAREGADQLALLTTD--SFRIGA--LEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCCcHHH-----H-HHHHHhhHHHHcCCCeEEEecCc--ccchHH--HHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 9999975 3 333333 234 355553333 233344 45554 5888753 5788888877753 2
Q ss_pred CcEEEEcccccChhhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEecc-CCcchHHHHHHHHHc---CCCEEEE
Q 009818 370 IGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFY-HEGYEEPLLMLMKRR---GVHSGLV 445 (524)
Q Consensus 370 ~GfaFLfAp~~hPam~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVf-h~~~~~~~A~al~~l---G~~~alV 445 (524)
.-+.+++.+-..+.-..++..-+.+.- ...|.. .+.|+... ..+-+..+++.++.. ++...++
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~---~~~p~e----------~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCG---VGRPVR----------RLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhc---cCCCCe----------EEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 467889988766544444433223211 122222 35555443 333344455666543 5654444
Q ss_pred EEcCCCceeecCCCcccc--eEeecccccc
Q 009818 446 VKGEEGALSMTTRLRSVN--ASKGLPVNYC 473 (524)
Q Consensus 446 V~G~eG~DEiS~~~~~~t--~v~g~~~~~~ 473 (524)
-| +||-+.-|..-+ ...++|+.|+
T Consensus 331 TK----LDEt~~~G~iL~i~~~~~lPI~yi 356 (767)
T PRK14723 331 TK----LDEATHLGPALDTVIRHRLPVHYV 356 (767)
T ss_pred ec----cCCCCCccHHHHHHHHHCCCeEEE
Confidence 44 455433222111 1145677777
No 98
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=50.23 E-value=19 Score=40.67 Aligned_cols=50 Identities=6% Similarity=-0.124 Sum_probs=39.1
Q ss_pred cceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhcc
Q 009818 98 AKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (524)
-.|.+.+|++.|. ..++ +++ ++.++ ..+|.+| |+|+|.+...||..+.+-
T Consensus 345 dGIiLpGG~G~~~---~~g~-i~a-i~~a~e~~iP~LGIClG~Qll~i~~grnv~gl 396 (525)
T TIGR00337 345 DGILVPGGFGERG---VEGK-ILA-IKYARENNIPFLGICLGMQLAVIEFARNVLGL 396 (525)
T ss_pred CEEEeCCCCCChh---hcCh-HHH-HHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCC
Confidence 3566777888776 3343 455 67776 7899999 999999999999998883
No 99
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.84 E-value=1.6e+02 Score=30.97 Aligned_cols=53 Identities=17% Similarity=0.045 Sum_probs=28.5
Q ss_pred EEcCCCCCCC---ccccchHHHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCC
Q 009818 298 HYGEPYDGNT---RFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAST 354 (524)
Q Consensus 298 i~GTGGDG~~---tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i 354 (524)
+=|+||-.++ ||-||.=|- =+|..+|-|+--|.+++=.- |.| -++||..||++
T Consensus 129 TGGiGGVHrGAe~t~DISaDL~--ELa~T~v~vV~AGaKsILDi-~~T-lE~LET~gVPv 184 (310)
T COG2313 129 TGGIGGVHRGAEHTFDISADLT--ELARTNVTVVCAGAKSILDI-GLT-LEVLETQGVPV 184 (310)
T ss_pred ecCcccccCCcccccccchhHH--HHhcCCeEEEecCchhhhcc-HHH-HHHHHhcCcce
Confidence 3344444344 566655421 24566666666666665543 333 46666666664
No 100
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=48.96 E-value=51 Score=35.00 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCC-------ccccchHH
Q 009818 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT-------RFFRSTLF 315 (524)
Q Consensus 250 G~~s~~QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGDG~~-------tfNiST~l 315 (524)
|.-| .+.++++.|.-.+|.| .+++....++++..-..+... ...+-+-|++..+.. +..-|+.+
T Consensus 20 gsKS-s~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~-~~~~~I~g~~~~~~~~~~~~~~~~~as~~~ 97 (417)
T PRK12830 20 GAKN-SAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRD-GDTLEIDPTGIQSMPLPNGKVKSLRASYYF 97 (417)
T ss_pred CcHH-HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEc-CCEEEEECCCCCCCCCCHHHHhhchhHHHH
Confidence 4444 3556666666677765 678888899998776555322 123334443322221 11233334
Q ss_pred HHHHHhccC-CeEEeecCCCCCCCCCCCHHHHHHhCCCCCC
Q 009818 316 VAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (524)
Q Consensus 316 aA~VlAa~G-v~VaKHGnRavsSksGSt~aDVLEaLGi~i~ 355 (524)
++.+++..| ++|...|......+.=..+-+.|++||+.+.
T Consensus 98 ~~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 138 (417)
T PRK12830 98 MGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVT 138 (417)
T ss_pred HHHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEE
Confidence 555555444 4898989888876655556788999999874
No 101
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=48.84 E-value=46 Score=35.43 Aligned_cols=105 Identities=9% Similarity=0.030 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC-------CccccchHH
Q 009818 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN-------TRFFRSTLF 315 (524)
Q Consensus 250 G~~s~~QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGDG~-------~tfNiST~l 315 (524)
|.-|..+ .++++|.-.+|.| .+++....+++++.-..+.......+.+-|++.-+. .+..-++.+
T Consensus 20 gsKS~~~-r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~~~~~i~g~~~~~~~~~~~~~~~s~~s~~~ 98 (417)
T PRK09369 20 GAKNAAL-PILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGNGTVTIDASNINNTEAPYELVKKMRASILV 98 (417)
T ss_pred CcHHHHH-HHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCCCEEEEECCCCCCCcCCHHHHhhhhhHHHH
Confidence 3334433 5555555556654 778999999999876554322212333433332111 011112222
Q ss_pred HHHHHhcc-CCeEEeecCCCCCCCCCCCHHHHHHhCCCCCC
Q 009818 316 VAAVRSCY-GESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (524)
Q Consensus 316 aA~VlAa~-Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~ 355 (524)
++.+++.. +.++...|+..+.++--..+.|.|++||+++.
T Consensus 99 l~~~~~~~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 139 (417)
T PRK09369 99 LGPLLARFGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIE 139 (417)
T ss_pred HHHHhccCCceEEEecCCCccCCCchHHHHHHHHHCCCEEE
Confidence 33334443 45899999888877766667899999999874
No 102
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.03 E-value=16 Score=35.88 Aligned_cols=44 Identities=18% Similarity=0.049 Sum_probs=32.0
Q ss_pred cceeeCCCCCCCCChhhhhhh-----HHHHHHHhhcCCCccc-cccHHHHhHHH
Q 009818 98 AKVCTGPTQTRPLREDEAFKV-----LDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (524)
Q Consensus 98 ~~v~~gp~~~~P~~~~~a~~~-----~~~~l~~~~~~l~~~~-~~~~~q~gaff 145 (524)
+-..|-||++.+. .+... ++.+|++ ....|.+| |+|.|.|+---
T Consensus 38 ~D~lIlPG~g~~~---~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 38 AETIILPGVGHFK---DAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred CCEEEECCCCCHH---HHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhhhc
Confidence 4445889998876 44432 2344777 56899999 99999998776
No 103
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.75 E-value=5.3e+02 Score=28.92 Aligned_cols=157 Identities=8% Similarity=0.009 Sum_probs=83.7
Q ss_pred CCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCCCCCC--CHHHHHHhCCCCC--CCCHHHHHHHHHhc-
Q 009818 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGV--TEEQMLKFMGAST--NLSVLQAKELLEDE- 368 (524)
Q Consensus 294 ~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsSksGS--t~aDVLEaLGi~i--~lspe~a~~~Lee~- 368 (524)
..+-++|.+|-|++|+-...+ . -+...|.+|..--.+. -+.|+ .+...-+.+|+++ ..+++.+.+.++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~--~L~~~GkkVglI~aDt--~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-W--QFHGKKKTVGFITTDH--SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-H--HHHHcCCcEEEEecCC--cchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 467799999999975322111 1 1235577777544432 22233 1122233588885 36788888888542
Q ss_pred ---CCcEEEEcccccCh-hhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEecc-CCcchHHHHHHHHHcCCCEE
Q 009818 369 ---EIGFAYVSLREARP-SLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFY-HEGYEEPLLMLMKRRGVHSG 443 (524)
Q Consensus 369 ---~~GfaFLfAp~~hP-am~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViGVf-h~~~~~~~A~al~~lG~~~a 443 (524)
+.-+.+++.+-..+ ....+..+++.++...|- . .+.|+... ...-+...++.+..+++.+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~Pd----e----------vlLVLsATtk~~d~~~i~~~F~~~~idgl 382 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPD----Y----------ICLTLSASMKSKDMIEIITNFKDIHIDGI 382 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCC----e----------EEEEECCccChHHHHHHHHHhcCCCCCEE
Confidence 24678888775444 333455555555432221 1 25555542 33334567777788888655
Q ss_pred EEEEcCCCceeecCCCcccc--eEeecccccc
Q 009818 444 LVVKGEEGALSMTTRLRSVN--ASKGLPVNYC 473 (524)
Q Consensus 444 lVV~G~eG~DEiS~~~~~~t--~v~g~~~~~~ 473 (524)
++-| +||-+.-|..-+ ...++|+.|+
T Consensus 383 I~TK----LDET~k~G~iLni~~~~~lPIsyi 410 (436)
T PRK11889 383 VFTK----FDETASSGELLKIPAVSSAPIVLM 410 (436)
T ss_pred EEEc----ccCCCCccHHHHHHHHHCcCEEEE
Confidence 5555 455443222111 1144566666
No 104
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=41.98 E-value=57 Score=34.31 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCC-----CCC-ccccchHH-HHHHHh
Q 009818 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----GNT-RFFRSTLF-VAAVRS 321 (524)
Q Consensus 256 QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGD-----G~~-tfNiST~l-aA~VlA 321 (524)
...++++|...+|+| .+++..+.++|+..-..+.......+.+-|.+.. +.. ....++.+ ++.+++
T Consensus 14 ~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~~~~~I~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~ 93 (400)
T cd01555 14 ALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENTLVIDASNINSTEAPYELVRKMRASILVLGPLLA 93 (400)
T ss_pred HHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECCCCEEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhc
Confidence 346677777778865 5679999999998765543221123444343221 000 00112221 222333
Q ss_pred c-cCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCC
Q 009818 322 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (524)
Q Consensus 322 a-~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~ 355 (524)
. .++.|..+|+..+.+..-....++|++||+++.
T Consensus 94 ~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~ 128 (400)
T cd01555 94 RFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIE 128 (400)
T ss_pred CCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEE
Confidence 2 457899889766554433445899999999875
No 105
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=39.89 E-value=54 Score=34.63 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCC-----C--CCccccchHHHHHHHh
Q 009818 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----G--NTRFFRSTLFVAAVRS 321 (524)
Q Consensus 256 QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGD-----G--~~tfNiST~laA~VlA 321 (524)
+..++++|.-..|.+ .+++....+++++.-..+.... ..+-+-|.+.. + ..+.+-+..+++-+++
T Consensus 25 ~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~~s~~~ra~~~~~~~~la 103 (416)
T TIGR01072 25 ALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN-NTLEINTPNINSTEAPYELVRKMRASILVLGPLLA 103 (416)
T ss_pred HHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC-CEEEEECCCCCCCCCCHHHHhhhhHHHHHHHHHhc
Confidence 345555555555543 5678888999987765554332 23445444321 0 0111211222222333
Q ss_pred c-cCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCC
Q 009818 322 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (524)
Q Consensus 322 a-~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~ 355 (524)
. .++++..+|+..+.+.....+.|+|+++|+++.
T Consensus 104 ~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~ 138 (416)
T TIGR01072 104 RFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIV 138 (416)
T ss_pred cCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEE
Confidence 2 357899999877777655556899999999874
No 106
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=38.70 E-value=1.6e+02 Score=31.53 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=72.6
Q ss_pred HHHHHhc--cCCeEEeecCCCCCCCCCCCHHHH---HHhCCCC---CCCCHHHHHHHHHhcCCcE-EEEcc---cccCh-
Q 009818 316 VAAVRSC--YGESCLLHGAEWMPPKGGVTEEQM---LKFMGAS---TNLSVLQAKELLEDEEIGF-AYVSL---REARP- 382 (524)
Q Consensus 316 aA~VlAa--~Gv~VaKHGnRavsSksGSt~aDV---LEaLGi~---i~lspe~a~~~Lee~~~Gf-aFLfA---p~~hP- 382 (524)
.+|-.|+ .|..|+.-.....|++-|-|++|- |+++|++ +-.+.+.+.+.+.+- .++ -++.| ..-||
T Consensus 62 ~SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~-~~~~pvINaGDG~~qHPT 140 (316)
T COG0540 62 LSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEF-SGVNPVINAGDGSHQHPT 140 (316)
T ss_pred hhHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHh-cCCCceEECCCCCCCCcc
Confidence 4444443 688999888888888999999995 6778888 346667777777661 222 24544 36788
Q ss_pred -hhhhHHhhhcccCCCCccccchhhhhhhhccCCceEEEe-ccCCcchHHHHHHHHHcCC
Q 009818 383 -SLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAG-FYHEGYEEPLLMLMKRRGV 440 (524)
Q Consensus 383 -am~~l~pvRk~LGiRTPL~npak~~~~lNPaga~~qViG-Vfh~~~~~~~A~al~~lG~ 440 (524)
+|=.+.-+|++.|- ...+ +..++| +-|-....-.+++|.++|.
T Consensus 141 Q~LLDl~TI~~~~G~------~~gl---------~iaivGDlkhsRva~S~~~~L~~~ga 185 (316)
T COG0540 141 QALLDLYTIREEFGR------LDGL---------KIAIVGDLKHSRVAHSNIQALKRFGA 185 (316)
T ss_pred HHHHHHHHHHHHhCC------cCCc---------EEEEEccccchHHHHHHHHHHHHcCC
Confidence 67789999999995 2222 444444 4455566666677777763
No 107
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=38.46 E-value=67 Score=28.67 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=46.4
Q ss_pred cCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009818 212 EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (524)
Q Consensus 212 ~m~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~ 285 (524)
......++.-| . +.||.+|..++...++. ......++..|+.+.+...-.-.|++||.-....|....
T Consensus 22 ~~Dy~PLlALL-~-r~Ltd~ev~~Va~~L~~----~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa~G 89 (96)
T PF11829_consen 22 PTDYVPLLALL-R-RRLTDDEVAEVAAELAA----RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLAAAG 89 (96)
T ss_dssp HHHHHHHHHHH-T-TTS-HHHHHHHHHHHHH----HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHh-c-ccCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhCC
Confidence 33445555433 3 34999999999999982 112233889999999998888899999998877776554
No 108
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=38.27 E-value=1.8e+02 Score=26.20 Aligned_cols=62 Identities=19% Similarity=0.086 Sum_probs=52.7
Q ss_pred CcHHHHHHHHhcCC--CCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009818 213 MRLVGALREVLAGG--HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (524)
Q Consensus 213 m~l~~~L~kL~~G~--~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre 283 (524)
.-|+++-++++.+. .+|..|.++....++ ..+-||.+ .+|-.+..||-|..|+..+.+.|-.
T Consensus 23 ~gWr~LAe~lg~~~~fr~S~~el~~cslkvl-------~p~gSPsk--~LL~~~~~rg~Tv~~Ll~~L~~Mgh 86 (97)
T cd08783 23 KGWRKLAELAGSRGRFRLSCLDLEQCSLKVL-------EPEGSPSR--SLLKLLGERGCTVTELSEFLQAMEH 86 (97)
T ss_pred CCHHHHHHHHccCCccccCHHHHHHHHHHHh-------cCCCCchH--HHHHHHHHcCCcHHHHHHHHHHhhh
Confidence 45999999999876 689999999988888 56667754 6888999999999999999998863
No 109
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=36.37 E-value=88 Score=30.76 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009818 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (524)
Q Consensus 215 l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~ 286 (524)
..+++..|...+.+..++-.+.++.++ ...++=..++-+.++-.+|.-|+++-..|.+++++.+.
T Consensus 34 ~~~vl~~l~~~~~~~~~~~~~~l~~iv-------~~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~ 98 (198)
T TIGR03481 34 HGALLDVMKEAKKLGYQGRYTKLAPAV-------REAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSI 98 (198)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHH-------HHhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 455666666655566777788888888 67889999999999999999999999999999998654
No 110
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.35 E-value=3.8e+02 Score=29.77 Aligned_cols=128 Identities=8% Similarity=0.071 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CCHHHHHHHHHHHHhhCCCCC----CCCCCCeeEEcCCCCCCCccccchHHHHHH
Q 009818 249 APGVSESLLSAFLIGQRMN--R---ETDRELKAYCLAFDDELGPPP----VADVKSLTHYGEPYDGNTRFFRSTLFVAAV 319 (524)
Q Consensus 249 ~G~~s~~QigAFLiaLR~K--G---ET~eELaG~a~Amre~~~~~~----~~~~~~vDi~GTGGDG~~tfNiST~laA~V 319 (524)
..++++.-+-.++-.++-+ . .+.+++...+........+++ ......+-++|..|-|++|.-.--+ ..
T Consensus 153 ~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA---~~ 229 (407)
T PRK12726 153 GRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLG---WQ 229 (407)
T ss_pred HcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHH---HH
Confidence 5667777777776666433 1 345666655544444443332 1123467799999999975211111 11
Q ss_pred HhccCCeEEeecCCCCCCCCCCCHHHHH----HhCCCCC--CCCHHHHHHHHHhc----CCcEEEEcccccChh
Q 009818 320 RSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVLQAKELLEDE----EIGFAYVSLREARPS 383 (524)
Q Consensus 320 lAa~Gv~VaKHGnRavsSksGSt~aDVL----EaLGi~i--~lspe~a~~~Lee~----~~GfaFLfAp~~hPa 383 (524)
+...|.+|..--.+.. ++|. .+-| +.+|+++ ..+|+++.+.++.. +.-+.+++.+-.+|-
T Consensus 230 l~~~g~~V~lItaDty--R~gA--veQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~ 299 (407)
T PRK12726 230 LLKQNRTVGFITTDTF--RSGA--VEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL 299 (407)
T ss_pred HHHcCCeEEEEeCCcc--CccH--HHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc
Confidence 2345788877655533 3455 4444 4488875 46788888877653 246788888877663
No 111
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=31.72 E-value=1.6e+02 Score=30.83 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC---Ccccc--c-hH--
Q 009818 250 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN---TRFFR--S-TL-- 314 (524)
Q Consensus 250 G~~s~~QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGDG~---~tfNi--S-T~-- 314 (524)
|.-+.++.+-++.++ .+|+| .+++..+.+++++.-..+...+ ..+-+-|.+..+. ..++. | +.
T Consensus 9 ~sKs~~~r~l~~a~l-~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~i~~~~s~~s~~ 86 (409)
T cd01556 9 GSKSISHRALLLAAL-AEGESRIENLLDSDDTLATLEALRALGAKIEEEG-GTVEIVGGGGLGLPPEAVLDCGNSGTTMR 86 (409)
T ss_pred CchHHHHHHHHHHHh-cCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEEcCCCCCCCCCceEEcCCchHHHH
Confidence 444556666666666 67766 6788999999998766654332 3344545433222 22232 1 22
Q ss_pred HHHHHHhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCC
Q 009818 315 FVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (524)
Q Consensus 315 laA~VlAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~ 355 (524)
+...+++.++.++..+|...+.+..=..+.++|++||+++.
T Consensus 87 ~l~~l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~ 127 (409)
T cd01556 87 LLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIE 127 (409)
T ss_pred HHHHHHHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEE
Confidence 11112233456888888744433322345899999999875
No 112
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.86 E-value=7.3e+02 Score=25.76 Aligned_cols=55 Identities=25% Similarity=0.417 Sum_probs=37.5
Q ss_pred CccccchhhhhhhhccCCceEE--EeccCCcc-------hHHHHHHHHHcCCCEEEEEEcCCCcee
Q 009818 398 PPVATSEKVQQFVRAQGREAIV--AGFYHEGY-------EEPLLMLMKRRGVHSGLVVKGEEGALS 454 (524)
Q Consensus 398 TPL~npak~~~~lNPaga~~qV--iGVfh~~~-------~~~~A~al~~lG~~~alVV~G~eG~DE 454 (524)
..+++|+...++++-.++++.. +|-.|..| .+.+.++-+..++ -+|.||-.|+++
T Consensus 150 ~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~i--Plv~hGgSGi~~ 213 (282)
T TIGR01859 150 AELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNI--PLVLHGASGIPE 213 (282)
T ss_pred cccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCC--CEEEECCCCCCH
Confidence 3578999988888877888887 45555333 3445555555553 489999888763
No 113
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=26.47 E-value=1e+02 Score=28.59 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=41.3
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhh
Q 009818 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETD-RELKAYCLAFDDE 284 (524)
Q Consensus 213 m~l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~-eELaG~a~Amre~ 284 (524)
..+.++++.+ ..+.+|.+.|++++..++ ++.-++. .++-.+-.+..|. +||..+++.+.+.
T Consensus 42 ~~l~~li~lv-~~g~It~~~ak~vl~~~~-------~~~~~~~---~ii~~~~l~~isd~~el~~~v~~vi~~ 103 (147)
T smart00845 42 EHLAELLKLI-EDGTISGKIAKEVLEELL-------ESGKSPE---EIVEEKGLKQISDEGELEAIVDEVIAE 103 (147)
T ss_pred HHHHHHHHHH-HcCCCcHHHHHHHHHHHH-------HcCCCHH---HHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 3477777655 555899999999999999 4444443 4444444555675 4898888766544
No 114
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=24.73 E-value=8.4e+02 Score=25.71 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcC--C---CHHHHHHH-HHHHHhhCCC-
Q 009818 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--E---TDRELKAY-CLAFDDELGP- 287 (524)
Q Consensus 215 l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KG--E---T~eELaG~-a~Amre~~~~- 287 (524)
+.+-++++..++.++.+-..++.+.++ ..++++.-.-.++-.++-+. + +.+++... .+.|.+...+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~l~~~L~-------~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 103 (318)
T PRK10416 31 FGEGINGLFAKKKIDEDLLEELEELLI-------EADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEPV 103 (318)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCcC
Confidence 455566777777888888888888888 78888888888887776552 1 45555443 3355554431
Q ss_pred ---CCCC--CCCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCC
Q 009818 288 ---PPVA--DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 334 (524)
Q Consensus 288 ---~~~~--~~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRa 334 (524)
+... ....+-++|.+|.|++|.-... ++ .++..|.+|+.-+.+-
T Consensus 104 ~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kL--A~-~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 104 EKPLNIEEKKPFVILVVGVNGVGKTTTIGKL--AH-KYKAQGKKVLLAAGDT 152 (318)
T ss_pred CccccccCCCCeEEEEECCCCCcHHHHHHHH--HH-HHHhcCCeEEEEecCc
Confidence 2111 1246779999999997522111 12 2345688888877654
No 115
>PHA00438 hypothetical protein
Probab=23.83 E-value=1.1e+02 Score=26.50 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009818 229 GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (524)
Q Consensus 229 s~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre 283 (524)
++-+....++.+= ....|++-|+.||.++-+-..|-||+.+.-+.+++
T Consensus 33 sYl~~sG~i~~lR-------~~G~SE~~IaGfl~Gl~yAs~~ldeme~r~~ql~e 80 (81)
T PHA00438 33 SYLEQSGEIRLLR-------QAGYSEAFIAGFLAGLQYASRTLDEMEARREQLRE 80 (81)
T ss_pred HHHHHhhhHHHHH-------HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666666666665 56689999999999999999999999877665553
No 116
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=23.59 E-value=3.3e+02 Score=29.03 Aligned_cols=120 Identities=28% Similarity=0.362 Sum_probs=0.0
Q ss_pred eCCCCCCCCChhhhhhhHHHHHHHh-----------hcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHH
Q 009818 102 TGPTQTRPLREDEAFKVLDTILRSA-----------KGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMN 170 (524)
Q Consensus 102 ~gp~~~~P~~~~~a~~~~~~~l~~~-----------~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~ 170 (524)
|.-|.-.||++++-.++-|+ ++.. |.+|+|. ||-+-|.+||+ +
T Consensus 89 V~~g~P~~lD~~EP~rvAea-V~~mgLkyVViTsVdRDDL~DG--------GA~hfa~~i~~---I-------------- 142 (306)
T COG0320 89 VKTGRPNPLDPDEPERVAEA-VKDMGLKYVVITSVDRDDLPDG--------GAQHFAECIRA---I-------------- 142 (306)
T ss_pred cCCCCCCCCCCchHHHHHHH-HHHhCCCeEEEEeecccccccc--------chHHHHHHHHH---H--------------
Q ss_pred hhhhHhhhhCCCceEEEe-CCCCcccccCCCCCCCCCCCCCccCcHHHHHHHHhcCC--------------------CCC
Q 009818 171 TFWPLLMRALPPDVIFIA-DPEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGG--------------------HLG 229 (524)
Q Consensus 171 ~~~~~l~~~lp~~~~f~a-~p~G~iMg~~~~~g~~~~~~~~~~m~l~~~L~kL~~G~--------------------~Ls 229 (524)
+.+.|.+.+=+ -|| |.| ....|+.+..-. --+
T Consensus 143 -------re~~P~t~iEvL~PD-------------F~G-------~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~ 195 (306)
T COG0320 143 -------RELNPQTTIEVLTPD-------------FRG-------NDDALEIVADAGPDVFNHNVETVPRLYPRVRPGAT 195 (306)
T ss_pred -------HhhCCCceEEEeCcc-------------ccC-------CHHHHHHHHhcCcchhhcccccchhcccccCCCCc
Q ss_pred HHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009818 230 YEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDE 284 (524)
Q Consensus 230 ~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~ 284 (524)
|+..-.+++..= +-.-+-.-.++++++| |||.+||.-..+=||++
T Consensus 196 Y~~SL~~L~~~k-------~~~P~i~TKSgiMlGL---GEt~~Ev~e~m~DLr~~ 240 (306)
T COG0320 196 YERSLSLLERAK-------ELGPDIPTKSGLMVGL---GETDEEVIEVMDDLRSA 240 (306)
T ss_pred HHHHHHHHHHHH-------HhCCCcccccceeeec---CCcHHHHHHHHHHHHHc
No 117
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=23.54 E-value=1.8e+02 Score=28.10 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=63.2
Q ss_pred eeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecC-----CCCCCCCCCCHHHHHHhCCC-CCCCCHHHHHHHHHhc-
Q 009818 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGA-----EWMPPKGGVTEEQMLKFMGA-STNLSVLQAKELLEDE- 368 (524)
Q Consensus 296 vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGn-----RavsSksGSt~aDVLEaLGi-~i~lspe~a~~~Lee~- 368 (524)
|-+.|++|.|++ |. |..+++..|++=.--|+ -+..+.-|.-...++++=.+ +=+.....+...+++.
T Consensus 3 iiilG~pGaGK~-----T~-A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 3 ILILGPPGAGKS-----TL-AKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred EEEECCCCCCHH-----HH-HHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence 458999999995 45 99999999988776553 33334444433444555442 2223345666666662
Q ss_pred -CCcEEEEcccccChhhhhHHhhhcccCCCC
Q 009818 369 -EIGFAYVSLREARPSLYSLIGLREHIKKRP 398 (524)
Q Consensus 369 -~~GfaFLfAp~~hPam~~l~pvRk~LGiRT 398 (524)
..||-|+.-|......+.+-..-+++|.+-
T Consensus 77 ~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~ 107 (178)
T COG0563 77 CKAGFILDGFPRTLCQARALKRLLKELGVRL 107 (178)
T ss_pred ccCeEEEeCCCCcHHHHHHHHHHHHHcCCCc
Confidence 128989999999888887777666666433
No 118
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=23.44 E-value=82 Score=34.67 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=107.6
Q ss_pred CCCCCCChhhhhhhHHHHHHHhhcCCCccccccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHhhhhC--C-
Q 009818 105 TQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRAL--P- 181 (524)
Q Consensus 105 ~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~q~gaffga~~~r~~~~~~~~~~s~~e~~~~~~~~~~l~~~l--p- 181 (524)
..+++|+.||+...++.|++ | .++..|+|||+-|+-+|+ . |.+|...+..--......+ |
T Consensus 9 ~~g~~Lt~eE~~~~~~~i~~---G------~~~d~QiaAfLmAl~~kG---e-----T~eEi~g~t~Am~~~~~~l~~~~ 71 (405)
T TIGR02644 9 RDGKKLSDEEINFFINGYTN---G------EIPDYQMSALLMAIYFNG---M-----TDEETAYLTKAMIDSGEVLDLSS 71 (405)
T ss_pred HcCCCCCHHHHHHHHHHHHc---C------CCCHHHHHHHHHHHHHcC---C-----CHHHHHHHHHHHHHhCCcCCCcc
Confidence 46789999997777776432 3 455579999999999999 5 7677655443211111122 2
Q ss_pred --CceEEEeCCCCcccccCCCC---------CCCC--CCCC-CccC-cHHHHHHHHh-cCCCCCHHHHHHHHHHhccCcc
Q 009818 182 --PDVIFIADPEGSIMGGGGSI---------GPHY--SGND-PREM-RLVGALREVL-AGGHLGYEEVQGVLRDVLPLQV 245 (524)
Q Consensus 182 --~~~~f~a~p~G~iMg~~~~~---------g~~~--~~~~-~~~m-~l~~~L~kL~-~G~~Ls~eEA~~a~~~IL~~~~ 245 (524)
..+.=+ |..|=+ |.+-++ |+.= .+++ .... --.+.|+.+. -.-+++.+|+.+.++.+= +.+
T Consensus 72 ~~~~~vD~-~gTGGd-G~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~~~~~l~~~G-~~f 148 (405)
T TIGR02644 72 LPGPKVDK-HSTGGV-GDKVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAEFIEIVNKVG-LAI 148 (405)
T ss_pred cCCCeeEE-eCCCCC-CCCchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHHHHHHHHHcC-eEE
Confidence 111111 222211 221111 1100 0111 1111 1556677776 445899999999998841 111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCCCcccc--chHHHHH---HH
Q 009818 246 DNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFR--STLFVAA---VR 320 (524)
Q Consensus 246 ~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGDG~~tfNi--ST~laA~---Vl 320 (524)
=...++..|+- --|.++|-.--|.+-+-=.+-+...+-... -.+.-++|+ .-|+|..-.++ .-.|+-. +-
T Consensus 149 l~~~~~l~PAd--k~l~~lRd~~~Tv~sipLi~aSimSKK~A~-G~~~~vlDV--k~G~gAfm~~~e~a~~LA~~~~~~g 223 (405)
T TIGR02644 149 IGQTKDLAPAD--KKLYALRDVTGTVDSIPLIASSIMSKKLAA-GADAIVLDV--KVGSGAFMKTLEDAKELAKLMVEIG 223 (405)
T ss_pred ecCccccCcch--hHHHHHhhcccccCcHHHHHHHHHHHHHhc-CCCeEEEee--cccCCCCcCCHHHHHHHHHHHHHHH
Confidence 11133455533 247778854458887743333443331111 112235776 33334432222 2221211 23
Q ss_pred hccCCeEEeec---CCCCCCCCCCCHHHHHHh
Q 009818 321 SCYGESCLLHG---AEWMPPKGGVTEEQMLKF 349 (524)
Q Consensus 321 Aa~Gv~VaKHG---nRavsSksGSt~aDVLEa 349 (524)
..+|.+|+-+. +......-|-. .++.|+
T Consensus 224 ~~~g~~~~a~~t~md~plG~~iGna-lEv~Ea 254 (405)
T TIGR02644 224 KGAGRKTSALLTDMNQPLGRAIGNA-LEVKEA 254 (405)
T ss_pred HHcCCeEEEEecCCCccccCCCCCh-hhHHHH
Confidence 55688655443 44444444432 345444
No 119
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=23.14 E-value=2.1e+02 Score=30.28 Aligned_cols=101 Identities=16% Similarity=0.024 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCC-CCCcccc--c-hH--HHHHH
Q 009818 253 SESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-GNTRFFR--S-TL--FVAAV 319 (524)
Q Consensus 253 s~~QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGD-G~~tfNi--S-T~--laA~V 319 (524)
+-++.+-++.+| .+|+| .+++..+.++++..-..+...+ ..+-+-|+|+. .....|+ | |. |...+
T Consensus 10 s~~~r~l~~a~l-a~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~i~~g~sgt~~r~l~~l 87 (409)
T TIGR01356 10 SITHRALILAAL-AEGETRVRNLLRSEDTLATLDALRALGAKIEDGG-EVAVIEGVGGKEPQAELDLGNSGTTARLLTGV 87 (409)
T ss_pred HHHHHHHHHHHh-CCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC-CEEEEEccCCCCCCCEEEecCchHHHHHHHHH
Confidence 444444444444 36665 7899999999998765554322 23334444431 1112111 1 21 23334
Q ss_pred HhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCC
Q 009818 320 RSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (524)
Q Consensus 320 lAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~ 355 (524)
+|.++.+|..+|...+.+.-=..+.+.|++||+.+.
T Consensus 88 ~a~~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~ 123 (409)
T TIGR01356 88 LALADGEVVLTGDESLRKRPMGRLVDALRQLGAEIS 123 (409)
T ss_pred HHcCCCeEEEECCcccccCCcHHHHHHHHHCCCEEE
Confidence 556778999999876644322334889999999875
No 120
>PLN02327 CTP synthase
Probab=23.01 E-value=1.7e+02 Score=33.72 Aligned_cols=54 Identities=9% Similarity=-0.118 Sum_probs=39.7
Q ss_pred hhhhccceeeCCCCCCCCChhhhhhhHHHHHHHhh-cCCCccc-cccHHHHhHHHHhhhhcc
Q 009818 93 LLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRA 152 (524)
Q Consensus 93 ~~~~~~~v~~gp~~~~P~~~~~a~~~~~~~l~~~~-~~l~~~~-~~~~~q~gaffga~~~r~ 152 (524)
+-+++ .|++.++++.+. ..++ +.+ ++.++ ..+|.+| |+|+|.+...||--+++-
T Consensus 360 L~~~D-GIvvpGGfG~~~---~~G~-i~a-i~~are~~iP~LGIClGmQl~viefaRnvlG~ 415 (557)
T PLN02327 360 LKGAD-GILVPGGFGDRG---VEGK-ILA-AKYARENKVPYLGICLGMQIAVIEFARSVLGL 415 (557)
T ss_pred hccCC-EEEeCCCCCCcc---cccH-HHH-HHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence 33444 567777776655 3355 455 67775 6899999 999999999999988775
No 121
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=22.88 E-value=2.3e+02 Score=32.69 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCeeEEcCCCCCC----Ccc---ccch--HHHHHH
Q 009818 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRF---FRST--LFVAAV 319 (524)
Q Consensus 256 QigAFLiaLR~KGET-------~eELaG~a~Amre~~~~~~~~~~~~vDi~GTGGDG~----~tf---NiST--~laA~V 319 (524)
|..++++|.-.+|++ .+++....++|+..-..+...+...+-+-|.+..+. ..+ |-+| .+++-+
T Consensus 325 ~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~~~~~i~g~~~~~~~~~~~~i~~~~s~ts~~ll~a~ 404 (735)
T PRK14806 325 SHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHNGRVTIHGVGLHGLKAPPGPLYMGNSGTSMRLLSGL 404 (735)
T ss_pred HHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCCCEEEEEcCCCCCCCCCCceeeccCchHHHHHHHHH
Confidence 445566666666654 567788888888776554321112233434332211 011 1111 122223
Q ss_pred HhccCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCC
Q 009818 320 RSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (524)
Q Consensus 320 lAa~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~ 355 (524)
++....+|...|...+..+--..+.|+|++||+++.
T Consensus 405 la~~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~ 440 (735)
T PRK14806 405 LAAQSFDSVLTGDASLSKRPMERVAKPLREMGAVIE 440 (735)
T ss_pred HhcCCCeEEEECChhhhhCChHHHHHHHHHCCCEEE
Confidence 344455788899888776544555789999999874
No 122
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=22.71 E-value=1.5e+02 Score=25.87 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCC
Q 009818 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLS-AFLIGQRMNRETDRELKAYCLAFDDELGPPPV 290 (524)
Q Consensus 215 l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~Qig-AFLiaLR~KGET~eELaG~a~Amre~~~~~~~ 290 (524)
+..+|+.+.....+|.+|...+..-+. ++.|.| .+|=.-+.||+ |+++.|+++....+.
T Consensus 16 V~~~Ld~ll~~G~is~~Ecd~Ir~p~~-----------T~sqqARrLLD~V~~KG~------~A~~~ll~~vq~~~~ 75 (81)
T cd08788 16 VDGALELLLTRGFFSSYDCDEIRLPIF-----------TPSQQARRLLDLVKAKGE------GAAKFLLEYVQQLPE 75 (81)
T ss_pred HHHHHHHHHHcCCccHhhcchhhcCCC-----------ChHHHHHHHHHHHHHHhH------HHHHHHHHHHHhCCC
Confidence 778999999999999999887765554 555544 66667789998 677788888765543
No 123
>PRK14974 cell division protein FtsY; Provisional
Probab=21.83 E-value=5.6e+02 Score=27.41 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHhc--------CCCHHH--HHHHHHHHHhhCCCCC---C------C-CCCCeeEEcCCCCCCCc
Q 009818 249 APGVSESLLSAFLIGQRMN--------RETDRE--LKAYCLAFDDELGPPP---V------A-DVKSLTHYGEPYDGNTR 308 (524)
Q Consensus 249 ~G~~s~~QigAFLiaLR~K--------GET~eE--LaG~a~Amre~~~~~~---~------~-~~~~vDi~GTGGDG~~t 308 (524)
+.++++.-.-.++-.++-+ +.+.++ ...+.+++.+.....+ . . ....+-.+|.+|-|++|
T Consensus 76 ~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~vi~~~G~~GvGKTT 155 (336)
T PRK14974 76 ESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTT 155 (336)
T ss_pred HCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhhhccCCCeEEEEEcCCCCCHHH
Confidence 5667776666666666544 233333 2334444444332211 1 1 12357799999999975
Q ss_pred cccchHHHHHHHhccCCeEEeecCCCCCCCCCC--CHHHHHHhCCCCCC-----CCHHH-HHHHH---HhcCCcEEEEcc
Q 009818 309 FFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGV--TEEQMLKFMGASTN-----LSVLQ-AKELL---EDEEIGFAYVSL 377 (524)
Q Consensus 309 fNiST~laA~VlAa~Gv~VaKHGnRavsSksGS--t~aDVLEaLGi~i~-----lspe~-a~~~L---ee~~~GfaFLfA 377 (524)
.-- - .|-.+...|.+|+....+.. +.|+ -+....+.+|+++. .+|.. +.+.+ ...+.-+.++..
T Consensus 156 tia--k-LA~~l~~~g~~V~li~~Dt~--R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDT 230 (336)
T PRK14974 156 TIA--K-LAYYLKKNGFSVVIAAGDTF--RAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDT 230 (336)
T ss_pred HHH--H-HHHHHHHcCCeEEEecCCcC--cHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 211 1 11234557889988665532 2233 11234456888752 23322 22322 232345667776
Q ss_pred cccCh
Q 009818 378 REARP 382 (524)
Q Consensus 378 p~~hP 382 (524)
+-..+
T Consensus 231 aGr~~ 235 (336)
T PRK14974 231 AGRMH 235 (336)
T ss_pred CCccC
Confidence 64443
No 124
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=21.72 E-value=6.1e+02 Score=26.63 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=72.3
Q ss_pred cCCeEEeecCCCCCCCCCCCHHHHHHhCCCCCC-----C-CHHHHHHHHHhcCCcEEEEcc--cccCh--hhhhHHhhhc
Q 009818 323 YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN-----L-SVLQAKELLEDEEIGFAYVSL--REARP--SLYSLIGLRE 392 (524)
Q Consensus 323 ~Gv~VaKHGnRavsSksGSt~aDVLEaLGi~i~-----l-spe~a~~~Lee~~~GfaFLfA--p~~hP--am~~l~pvRk 392 (524)
.|-.|.--+....+..-|-|+.|...-|+--.+ . ....+.+.-+. .++-.+.| ...|| +|-.+.-+++
T Consensus 68 LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~--~~vPVINag~~~~HPtQaL~Dl~Ti~e 145 (304)
T PRK00779 68 LGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEY--STVPVINGLTDLSHPCQILADLLTIYE 145 (304)
T ss_pred cCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHh--CCCCEEeCCCCCCChHHHHHHHHHHHH
Confidence 577777666666566678889998776544322 2 23344444444 55555654 46899 7889999999
Q ss_pred ccCCCCccccchhhhhhhhccCCceEEEeccCCcchHHHHHHHHHcCCCEEEEEEcCCCc
Q 009818 393 HIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (524)
Q Consensus 393 ~LGiRTPL~npak~~~~lNPaga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~G~eG~ 452 (524)
++|. ..++ +..++|= |.....-++.++..+|++ +++-+.+++
T Consensus 146 ~~g~------l~gl---------~i~~vGd-~~~v~~Sl~~~l~~~g~~--v~~~~P~~~ 187 (304)
T PRK00779 146 HRGS------LKGL---------KVAWVGD-GNNVANSLLLAAALLGFD--LRVATPKGY 187 (304)
T ss_pred HhCC------cCCc---------EEEEEeC-CCccHHHHHHHHHHcCCE--EEEECCccc
Confidence 9872 2333 6778887 567888888899999873 444454553
No 125
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=21.68 E-value=9.9e+02 Score=26.68 Aligned_cols=211 Identities=14% Similarity=0.028 Sum_probs=118.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHH---HHHHHHHHHhcCCCHHHH--HHHHHHHHhhCCCCC
Q 009818 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESL---LSAFLIGQRMNRETDREL--KAYCLAFDDELGPPP 289 (524)
Q Consensus 215 l~~~L~kL~~G~~Ls~eEA~~a~~~IL~~~~~~~~G~~s~~Q---igAFLiaLR~KGET~eEL--aG~a~Amre~~~~~~ 289 (524)
+.+++..+..|. ..||.+.+..-..+-.. .|++.+.. .++-.....-.-.+...| .-...++++-..+..
T Consensus 42 IP~~~~lv~~g~---~~~a~~~i~~tn~~p~~--~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~ 116 (457)
T COG0493 42 IPEPIGLVREGV---DHEAIKLIHKTNNLPAI--TGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGE 116 (457)
T ss_pred CCCHHHHHhcCC---cHHHHHHHHHhCCCccc--cCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCC
Confidence 455566666775 44444444443322111 56666644 333333221111222322 222334444333332
Q ss_pred CC---CCCCeeEEcCCCCCCCccccchHHHHHHHhccCCeEEeecCCCCCC---CCCC-----------CHHHHHHhCCC
Q 009818 290 VA---DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPP---KGGV-----------TEEQMLKFMGA 352 (524)
Q Consensus 290 ~~---~~~~vDi~GTGGDG~~tfNiST~laA~VlAa~Gv~VaKHGnRavsS---ksGS-----------t~aDVLEaLGi 352 (524)
.+ ....|=|+|.|-+|.. +|..|+..|+.|..+++.+-.. .+|. ..-++|+.+|+
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~--------~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLA--------AADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CCCCCCCCEEEEECCCchHhh--------hHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCe
Confidence 21 1245778888888864 6889999999999999876442 1222 12467888887
Q ss_pred CC--------CCCHHHHHHHHHhcC----------CcEEEEcccccChhhhhHHhhhcccCCCCcc-ccchhhhhhhhcc
Q 009818 353 ST--------NLSVLQAKELLEDEE----------IGFAYVSLREARPSLYSLIGLREHIKKRPPV-ATSEKVQQFVRAQ 413 (524)
Q Consensus 353 ~i--------~lspe~a~~~Lee~~----------~GfaFLfAp~~hPam~~l~pvRk~LGiRTPL-~npak~~~~lNPa 413 (524)
.+ +.+.++..+.++..- .++---.++..|.||.++...+++...-.+- .+| .+.
T Consensus 189 ~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~-------~~~ 261 (457)
T COG0493 189 EFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTP-------PAK 261 (457)
T ss_pred EEEEcceECCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCC-------CCC
Confidence 52 456666666662200 1111113678899999999988665443331 111 122
Q ss_pred CCceEEEeccCCcchHHHHHHHHHcCCCEEEEEE
Q 009818 414 GREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVK 447 (524)
Q Consensus 414 ga~~qViGVfh~~~~~~~A~al~~lG~~~alVV~ 447 (524)
+.+..|||.-+-.+.=. ....++|.+.+..+.
T Consensus 262 gk~vvVIGgG~Ta~D~~--~t~~r~Ga~~v~~~~ 293 (457)
T COG0493 262 GKRVVVIGGGDTAMDCA--GTALRLGAKSVTCFY 293 (457)
T ss_pred CCeEEEECCCCCHHHHH--HHHhhcCCeEEEEec
Confidence 34789999997765433 667789998888773
No 126
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=21.59 E-value=1.2e+02 Score=28.54 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC----
Q 009818 216 VGALREVLAGGHL---GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP---- 288 (524)
Q Consensus 216 ~~~L~kL~~G~~L---s~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~~~---- 288 (524)
.+++..|..+... +.++.++.++.++ ...++-..++-+.++-..+.-|++|-..|++++++.+...
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~v-------~~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~ 78 (170)
T PF05494_consen 6 DDVLSILKDNKSKYKQDPEARRAKIEDIV-------DPYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKR 78 (170)
T ss_dssp HHHHHHHHT-HHHHTT-HHHHHHHHHHHT-------GGGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccCCHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555432 4688999999999 7889999999999999999999999999999999865431
Q ss_pred -CCCCCCCeeEEcCCCCCC---CccccchH
Q 009818 289 -PVADVKSLTHYGEPYDGN---TRFFRSTL 314 (524)
Q Consensus 289 -~~~~~~~vDi~GTGGDG~---~tfNiST~ 314 (524)
..-....+.+.++.-.+. ++..+.|-
T Consensus 79 l~~y~~~~v~~~~~~~~~~~~~~~~~V~t~ 108 (170)
T PF05494_consen 79 LDEYSGQSVEVLSEPPNGRKGGNRAIVRTE 108 (170)
T ss_dssp HHT-SS-EEEE------S-TT-SEEEEEEE
T ss_pred HHhhCCCeEEEEeccCCCCCCCCEEEEEEE
Confidence 111122355655544443 55555554
No 127
>PRK09234 fbiC FO synthase; Reviewed
Probab=21.02 E-value=1.4e+03 Score=27.69 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.6
Q ss_pred CccCcHHHHHHHHhcCCCCCHHHHHHHH
Q 009818 210 PREMRLVGALREVLAGGHLGYEEVQGVL 237 (524)
Q Consensus 210 ~~~m~l~~~L~kL~~G~~Ls~eEA~~a~ 237 (524)
+....+..+++++.+|+.||.+|+..++
T Consensus 9 ~~~~~~~~~l~k~~~g~~ls~eEa~~Ll 36 (843)
T PRK09234 9 PTASAMRRALRRARDGVTLDVDEAAVLL 36 (843)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 3345589999999999999999998776
No 128
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=20.03 E-value=3.3e+02 Score=27.00 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCC---CHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009818 215 LVGALREVLAGGHL---GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG 286 (524)
Q Consensus 215 l~~~L~kL~~G~~L---s~eEA~~a~~~IL~~~~~~~~G~~s~~QigAFLiaLR~KGET~eELaG~a~Amre~~~ 286 (524)
..+++..|...+.. ..++.+..++..+ ...++-..++.+.++-.+|.-|+|+-..|++++++.+.
T Consensus 35 ~~~vl~~l~~~~~~~~~~~~~~~~~v~~~l-------~p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv 102 (211)
T PRK15117 35 AQKTFDRLKNEQPKIRANPDYLRTIVDQEL-------LPYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLK 102 (211)
T ss_pred HHHHHHHHHhCHHhhccCHHHHHHHHHHHc-------cccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 34455555554332 5788888889888 78899999999999999999999999999999998765
Done!