BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009819
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 224 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHR-INEGKSCLPRNVLIVWAV 282
+V+GP+G YE ++LV GIG++PF +IL + ++ N + + + W
Sbjct: 2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLC 61
Query: 283 KKSNELSLLSN 293
+ ++ ++
Sbjct: 62 RDTHAFEWFAD 72
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 435 DNAQNVGTMAHNDIRKKD--TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS 492
D +Q H+D +KD T LYG RP++ F + + + + +GV +CGP +
Sbjct: 100 DESQANHFAVHHD-EEKDVITGLKQKTLYG-RPNWDNEFKTIASQHPNTRIGVFLCGPEA 157
Query: 493 LQSSVAKEIRSHS 505
L +++K+ S+S
Sbjct: 158 LAETLSKQSISNS 170
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 469 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 522
Query: 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 357
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 523 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 582
Query: 358 GLYVISSTVG 367
Y I + +G
Sbjct: 583 TFYDIVAELG 592
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 469 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 522
Query: 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 357
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 523 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 582
Query: 358 GLYVISSTVG 367
Y I + +G
Sbjct: 583 TFYDIVAELG 592
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 469 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 522
Query: 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 357
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 523 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 582
Query: 358 GLYVISSTVG 367
Y I + +G
Sbjct: 583 TFYDIVAELG 592
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 231 HEVPYHLMYENLILVAGGIGISPFLAI 257
+E P ++ ILVAGGIGI+P L++
Sbjct: 103 NEFPLDKRAKSFILVAGGIGITPMLSM 129
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 309 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 362
Query: 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 357
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 363 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 422
Query: 358 GLYVISSTVGFI 369
Y I + +G +
Sbjct: 423 TFYDIVAELGAM 434
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 488 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 541
Query: 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 357
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 542 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 601
Query: 358 GLYVISSTVG 367
Y I + +G
Sbjct: 602 TFYDIVAELG 611
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 309 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 362
Query: 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 357
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 363 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 422
Query: 358 GLYVISSTVGFI 369
Y I + +G +
Sbjct: 423 TFYDIVAELGAM 434
>pdb|3LJ4|A Chain A, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|B Chain B, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|C Chain C, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|D Chain D, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|E Chain E, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|F Chain F, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|G Chain G, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|H Chain H, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|I Chain I, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|J Chain J, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|K Chain K, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|L Chain L, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|1VT0|M Chain M, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|N Chain N, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|O Chain O, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|P Chain P, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|Q Chain Q, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|R Chain R, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|S Chain S, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|T Chain T, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|U Chain U, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|V Chain V, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|W Chain W, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|X Chain X, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
Length = 602
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 31/62 (50%)
Query: 306 KLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISST 365
+ +LET+++ +GE+++++ + IY VP +++ G+ +V V+
Sbjct: 441 RADLETYVFQDNLATAXRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLXAEVVDLA 500
Query: 366 VG 367
G
Sbjct: 501 TG 502
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 237 LMYEN---LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 293
L+++N L+L++ G+G++P LA+L E C P N I W +E +
Sbjct: 267 LIHQNEVPLVLLSSGVGVTPLLAMLE-------EQVKCNP-NRPIYWIQSSYDE---KTQ 315
Query: 294 FYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKT--MSSSIYPVPSGCAMSVLVG 350
+K+ + ++ N++ I V +TEP + L + + +Y S M ++G
Sbjct: 316 AFKKHVDELLAECANVDKII-VHTDTEPLINAAFLKEKSPAHADVYTCGSLAFMQAMIG 373
>pdb|2LM4|A Chain A, Solution Nmr Structure Of Mitochondrial Succinate
Dehydrogenase Assembly Factor 2 From Saccharomyces
Cerevisiae, Northeast Structural Genomics Consortium
Target Yt682a
Length = 109
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 25 VRELSW--LQWHPFSVSSSPLEGKYHSSVLIKVLGEWTEN 62
+ EL W W + +SPL K+ +S L+K L E++EN
Sbjct: 65 LNELDWDIYYWATKNFKTSPLPDKWANSKLLKQLQEFSEN 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,624,286
Number of Sequences: 62578
Number of extensions: 463783
Number of successful extensions: 1187
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 21
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)