Query 009819
Match_columns 524
No_of_seqs 327 out of 2566
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 17:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02844 oxidoreductase/ferric 100.0 9.4E-62 2E-66 541.8 34.5 361 8-524 332-722 (722)
2 PLN02631 ferric-chelate reduct 100.0 4.3E-61 9.4E-66 534.4 34.8 354 10-523 330-698 (699)
3 PLN02292 ferric-chelate reduct 100.0 6.9E-61 1.5E-65 533.5 32.3 347 10-523 347-701 (702)
4 KOG0039 Ferric reductase, NADH 100.0 1.4E-39 3E-44 362.5 22.2 266 4-522 370-646 (646)
5 cd06186 NOX_Duox_like_FAD_NADP 100.0 4.1E-28 9E-33 232.7 23.0 140 11-296 21-161 (210)
6 cd06198 FNR_like_3 NAD(P) bind 99.9 3.8E-24 8.3E-29 206.6 21.7 152 1-316 9-160 (216)
7 COG4097 Predicted ferric reduc 99.9 4.5E-24 9.7E-29 219.7 16.1 141 8-313 237-378 (438)
8 cd06195 FNR1 Ferredoxin-NADP+ 99.9 8.9E-23 1.9E-27 200.5 20.9 89 222-320 82-172 (241)
9 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.1E-22 2.5E-27 198.8 21.4 67 222-293 105-174 (220)
10 cd06215 FNR_iron_sulfur_bindin 99.9 1.3E-22 2.7E-27 197.2 20.2 87 222-319 86-172 (231)
11 cd06212 monooxygenase_like The 99.9 2E-22 4.3E-27 196.7 21.5 87 222-319 86-172 (232)
12 PF08030 NAD_binding_6: Ferric 99.9 1.1E-23 2.3E-28 193.2 11.8 80 239-321 1-80 (156)
13 cd06189 flavin_oxioreductase N 99.9 1.4E-22 3.1E-27 197.0 19.8 87 222-319 81-167 (224)
14 cd06210 MMO_FAD_NAD_binding Me 99.9 3E-22 6.4E-27 195.7 20.6 86 222-318 91-176 (236)
15 cd06184 flavohem_like_fad_nad_ 99.9 5.4E-22 1.2E-26 195.4 21.9 87 222-319 96-182 (247)
16 cd06191 FNR_iron_sulfur_bindin 99.9 4.7E-22 1E-26 194.0 20.2 88 222-320 85-172 (231)
17 cd06187 O2ase_reductase_like T 99.9 1.1E-21 2.4E-26 189.8 21.0 86 222-318 81-166 (224)
18 cd06213 oxygenase_e_transfer_s 99.9 9.1E-22 2E-26 191.7 20.2 86 222-318 84-169 (227)
19 cd06211 phenol_2-monooxygenase 99.9 7.5E-22 1.6E-26 193.8 19.6 87 222-319 92-178 (238)
20 PRK08051 fre FMN reductase; Va 99.9 7.9E-22 1.7E-26 193.6 19.7 86 222-318 85-170 (232)
21 cd00322 FNR_like Ferredoxin re 99.9 1.7E-21 3.6E-26 187.0 21.2 153 3-319 12-166 (223)
22 cd06216 FNR_iron_sulfur_bindin 99.9 1.9E-21 4.1E-26 191.3 21.4 86 222-318 105-190 (243)
23 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.4E-21 3E-26 190.3 19.7 86 222-319 86-171 (228)
24 cd06190 T4MO_e_transfer_like T 99.9 2.7E-21 5.9E-26 188.5 21.5 89 222-319 80-168 (232)
25 cd06194 FNR_N-term_Iron_sulfur 99.9 1.8E-21 3.9E-26 188.5 19.6 87 222-319 79-166 (222)
26 cd06188 NADH_quinone_reductase 99.9 2E-21 4.3E-26 196.3 19.6 87 222-319 134-220 (283)
27 cd06217 FNR_iron_sulfur_bindin 99.9 3.1E-21 6.8E-26 187.9 20.1 86 222-318 90-175 (235)
28 PRK07609 CDP-6-deoxy-delta-3,4 99.9 3E-21 6.4E-26 199.5 20.9 86 222-318 187-272 (339)
29 PRK13289 bifunctional nitric o 99.9 4.3E-21 9.3E-26 202.1 21.5 86 222-318 244-329 (399)
30 PRK10684 HCP oxidoreductase, N 99.9 3.7E-21 8E-26 198.8 20.5 84 222-316 94-177 (332)
31 PRK08345 cytochrome-c3 hydroge 99.9 2.1E-20 4.5E-25 190.1 23.4 88 222-319 90-178 (289)
32 cd06185 PDR_like Phthalate dio 99.9 6E-20 1.3E-24 176.3 21.8 66 222-297 82-147 (211)
33 PRK11872 antC anthranilate dio 99.9 1.7E-20 3.6E-25 194.9 19.2 85 222-318 193-277 (340)
34 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 4.1E-20 9E-25 191.9 21.2 88 222-319 90-179 (352)
35 cd06214 PA_degradation_oxidore 99.9 5.4E-20 1.2E-24 180.1 20.7 87 222-318 90-177 (241)
36 cd06218 DHOD_e_trans FAD/NAD b 99.8 8.1E-20 1.7E-24 181.4 21.4 67 222-297 81-147 (246)
37 cd06221 sulfite_reductase_like 99.8 1.5E-19 3.3E-24 180.1 19.5 121 222-355 80-202 (253)
38 PRK00054 dihydroorotate dehydr 99.8 7E-19 1.5E-23 174.7 22.4 65 222-294 85-149 (250)
39 PRK10926 ferredoxin-NADP reduc 99.8 5.2E-19 1.1E-23 175.9 20.6 87 222-319 87-176 (248)
40 cd06183 cyt_b5_reduct_like Cyt 99.8 2.8E-19 6.1E-24 173.6 17.4 125 222-355 86-213 (234)
41 cd06200 SiR_like1 Cytochrome p 99.8 4.7E-19 1E-23 175.9 19.4 85 222-318 92-177 (245)
42 PRK05464 Na(+)-translocating N 99.8 6.4E-19 1.4E-23 187.4 20.6 87 222-319 258-344 (409)
43 TIGR01941 nqrF NADH:ubiquinone 99.8 8E-19 1.7E-23 186.5 20.7 87 222-319 254-340 (405)
44 cd06220 DHOD_e_trans_like2 FAD 99.8 2.3E-18 4.9E-23 169.2 21.4 61 222-293 73-133 (233)
45 COG1018 Hmp Flavodoxin reducta 99.8 2E-18 4.3E-23 174.6 21.0 134 2-293 21-157 (266)
46 PRK05713 hypothetical protein; 99.8 5.9E-19 1.3E-23 181.1 17.2 83 222-315 173-257 (312)
47 PLN03116 ferredoxin--NADP+ red 99.8 1.8E-18 3.8E-23 177.6 20.7 92 222-319 137-231 (307)
48 cd06208 CYPOR_like_FNR These f 99.8 3E-18 6.4E-23 173.9 22.0 92 222-319 117-210 (286)
49 cd06196 FNR_like_1 Ferredoxin 99.8 1.6E-18 3.5E-23 167.4 16.6 112 222-354 86-197 (218)
50 TIGR03224 benzo_boxA benzoyl-C 99.8 1E-17 2.2E-22 178.8 21.6 87 222-318 249-336 (411)
51 cd06219 DHOD_e_trans_like1 FAD 99.8 4.5E-18 9.8E-23 168.9 16.7 67 222-298 80-147 (248)
52 PLN03115 ferredoxin--NADP(+) r 99.8 1.4E-17 2.9E-22 175.4 20.7 93 222-320 197-291 (367)
53 PRK05802 hypothetical protein; 99.8 1.6E-17 3.4E-22 172.0 19.8 67 222-297 150-221 (320)
54 PRK06222 ferredoxin-NADP(+) re 99.8 8.6E-18 1.9E-22 170.3 17.1 112 222-355 81-193 (281)
55 cd06192 DHOD_e_trans_like FAD/ 99.8 8.3E-18 1.8E-22 165.9 15.8 67 222-297 80-146 (243)
56 cd06182 CYPOR_like NADPH cytoc 99.8 2.1E-17 4.5E-22 166.6 18.7 92 222-320 97-190 (267)
57 PRK08221 anaerobic sulfite red 99.8 4.1E-17 8.8E-22 164.0 19.1 119 222-354 83-203 (263)
58 PTZ00274 cytochrome b5 reducta 99.7 2.5E-17 5.5E-22 170.8 16.9 128 222-354 142-274 (325)
59 PTZ00319 NADH-cytochrome B5 re 99.7 2.6E-17 5.6E-22 168.6 16.6 122 222-354 134-278 (300)
60 cd06201 SiR_like2 Cytochrome p 99.7 1.3E-16 2.8E-21 162.5 19.2 81 223-318 139-221 (289)
61 TIGR02911 sulfite_red_B sulfit 99.7 7.9E-17 1.7E-21 161.7 17.4 119 222-354 81-201 (261)
62 KOG0534 NADH-cytochrome b-5 re 99.7 2.5E-16 5.4E-21 160.2 15.0 123 222-354 139-264 (286)
63 PLN02252 nitrate reductase [NA 99.7 2.7E-16 5.8E-21 181.3 16.7 123 222-354 731-866 (888)
64 COG0543 UbiB 2-polyprenylpheno 99.7 7.9E-16 1.7E-20 154.1 17.9 113 222-353 90-202 (252)
65 PRK12778 putative bifunctional 99.6 4E-15 8.7E-20 169.5 17.0 64 222-294 81-145 (752)
66 PRK12779 putative bifunctional 99.6 1E-14 2.2E-19 169.7 20.1 64 222-293 730-796 (944)
67 PRK12775 putative trifunctiona 99.6 1.6E-14 3.5E-19 169.1 20.1 61 224-293 85-145 (1006)
68 PF08022 FAD_binding_8: FAD-bi 99.6 7E-17 1.5E-21 141.4 -1.4 56 13-70 28-85 (105)
69 cd06193 siderophore_interactin 99.6 7.1E-14 1.5E-18 137.8 18.2 57 222-288 104-160 (235)
70 PTZ00306 NADH-dependent fumara 99.5 7.9E-14 1.7E-18 165.7 17.1 125 222-354 1004-1140(1167)
71 cd06207 CyPoR_like NADPH cytoc 99.5 2.3E-13 5E-18 143.8 17.6 91 222-319 213-304 (382)
72 cd06206 bifunctional_CYPOR The 99.5 3.4E-13 7.4E-18 142.6 17.7 91 221-319 212-303 (384)
73 TIGR01931 cysJ sulfite reducta 99.5 2.5E-13 5.4E-18 151.5 15.3 85 222-317 432-518 (597)
74 cd06203 methionine_synthase_re 99.4 5.5E-12 1.2E-16 134.2 19.7 94 222-320 222-318 (398)
75 cd06199 SiR Cytochrome p450- l 99.4 2E-12 4.4E-17 135.8 12.4 88 222-320 195-284 (360)
76 PRK06214 sulfite reductase; Pr 99.3 1.6E-11 3.4E-16 135.1 14.2 89 220-320 365-454 (530)
77 cd06202 Nitric_oxide_synthase 99.2 2.5E-10 5.5E-15 122.0 17.3 92 223-319 229-324 (406)
78 cd06204 CYPOR NADPH cytochrome 99.2 1.8E-10 3.9E-15 123.4 15.6 92 222-320 248-340 (416)
79 PRK10953 cysJ sulfite reductas 99.2 7.7E-11 1.7E-15 131.7 13.2 87 222-319 435-523 (600)
80 PF00175 NAD_binding_1: Oxidor 99.1 1.6E-10 3.5E-15 99.4 9.1 48 244-298 1-48 (109)
81 COG2871 NqrF Na+-transporting 99.1 1.1E-09 2.4E-14 110.8 12.9 107 202-321 241-347 (410)
82 PRK06567 putative bifunctional 98.4 2.1E-06 4.6E-11 100.1 12.9 51 14-65 818-871 (1028)
83 COG0369 CysJ Sulfite reductase 98.4 7.8E-06 1.7E-10 91.4 15.9 73 238-320 439-511 (587)
84 PF00970 FAD_binding_6: Oxidor 98.4 6.8E-07 1.5E-11 76.3 5.8 54 11-65 26-81 (99)
85 KOG1158 NADP/FAD dependent oxi 98.3 6.2E-06 1.3E-10 92.7 14.6 77 238-319 490-566 (645)
86 KOG1924 RhoA GTPase effector D 97.9 4.7E-05 1E-09 85.6 9.1 6 225-230 622-627 (1102)
87 KOG3378 Globins and related he 97.5 0.00013 2.8E-09 74.2 5.1 43 222-264 242-287 (385)
88 KOG1159 NADP-dependent flavopr 92.7 0.23 5E-06 54.7 6.4 69 219-296 414-482 (574)
89 KOG1923 Rac1 GTPase effector F 86.2 2.2 4.8E-05 49.3 7.8 9 182-190 321-329 (830)
90 PHA03378 EBNA-3B; Provisional 85.3 5.6 0.00012 45.7 10.2 14 218-231 804-817 (991)
91 KOG3671 Actin regulatory prote 83.2 16 0.00035 40.6 12.4 23 21-43 241-263 (569)
92 cd06196 FNR_like_1 Ferredoxin 74.8 2.3 5.1E-05 41.0 2.7 49 12-62 25-77 (218)
93 KOG1923 Rac1 GTPase effector F 74.4 13 0.00027 43.4 8.6 12 387-398 560-571 (830)
94 PHA03378 EBNA-3B; Provisional 72.3 52 0.0011 38.2 12.5 13 252-264 819-831 (991)
95 PF11118 DUF2627: Protein of u 71.5 3.2 6.9E-05 35.0 2.3 28 385-412 36-63 (77)
96 PRK06222 ferredoxin-NADP(+) re 69.8 7.7 0.00017 39.6 5.2 49 12-63 25-73 (281)
97 KOG3671 Actin regulatory prote 67.9 21 0.00045 39.9 8.1 13 247-259 491-503 (569)
98 COG0543 UbiB 2-polyprenylpheno 62.7 16 0.00035 36.8 5.9 50 13-66 34-85 (252)
99 cd06221 sulfite_reductase_like 61.7 7.6 0.00016 38.9 3.3 48 12-63 25-72 (253)
100 cd06183 cyt_b5_reduct_like Cyt 60.9 14 0.0003 35.7 4.9 51 12-63 26-78 (234)
101 KOG4849 mRNA cleavage factor I 57.0 65 0.0014 34.7 9.1 9 198-206 325-333 (498)
102 cd06219 DHOD_e_trans_like1 FAD 55.7 19 0.00042 35.8 5.0 59 3-64 15-73 (248)
103 KOG0534 NADH-cytochrome b-5 re 55.5 15 0.00032 38.3 4.3 39 464-503 236-274 (286)
104 KOG0132 RNA polymerase II C-te 54.7 60 0.0013 38.2 9.0 9 226-234 719-727 (894)
105 TIGR02911 sulfite_red_B sulfit 53.8 15 0.00032 37.1 3.9 46 12-63 28-73 (261)
106 cd06192 DHOD_e_trans_like FAD/ 52.8 12 0.00025 37.0 2.9 62 2-64 12-73 (243)
107 PF12238 MSA-2c: Merozoite sur 51.5 35 0.00075 34.0 5.9 13 160-172 179-191 (205)
108 cd06182 CYPOR_like NADPH cytoc 50.3 12 0.00025 38.1 2.5 53 2-56 18-71 (267)
109 PTZ00274 cytochrome b5 reducta 44.3 21 0.00046 37.6 3.4 45 11-56 78-125 (325)
110 PF02162 XYPPX: XYPPX repeat ( 41.5 20 0.00042 21.3 1.4 8 130-137 3-10 (15)
111 PRK15319 AIDA autotransporter- 40.4 36 0.00077 43.6 4.8 6 222-227 1765-1770(2039)
112 PRK08221 anaerobic sulfite red 39.5 33 0.00071 34.7 3.8 45 13-63 31-75 (263)
113 PRK15319 AIDA autotransporter- 38.5 55 0.0012 42.1 6.0 7 481-487 1946-1952(2039)
114 KOG1830 Wiskott Aldrich syndro 34.9 3.8E+02 0.0083 29.8 10.9 8 164-171 389-396 (518)
115 PRK12778 putative bifunctional 32.3 37 0.00079 39.7 3.2 84 12-117 25-110 (752)
116 cd06204 CYPOR NADPH cytochrome 32.1 31 0.00068 37.4 2.4 20 484-503 365-385 (416)
117 PTZ00370 STEVOR; Provisional 30.7 21 0.00045 37.3 0.7 15 409-423 272-286 (296)
118 TIGR01282 nifD nitrogenase mol 30.6 45 0.00097 36.9 3.3 67 454-522 106-174 (466)
119 cd01976 Nitrogenase_MoFe_alpha 30.3 42 0.00092 36.5 3.0 67 454-522 73-141 (421)
120 PRK12446 undecaprenyldiphospho 29.5 72 0.0016 33.7 4.6 24 240-263 2-27 (352)
121 cd06199 SiR Cytochrome p450- l 29.0 35 0.00077 36.2 2.1 20 484-503 309-329 (360)
122 TIGR01478 STEVOR variant surfa 27.8 25 0.00054 36.7 0.7 15 409-423 276-290 (295)
123 KOG4672 Uncharacterized conser 27.7 2.9E+02 0.0063 30.5 8.5 16 158-173 345-360 (487)
124 PTZ00319 NADH-cytochrome B5 re 25.7 62 0.0013 33.5 3.2 44 12-56 61-108 (300)
125 PLN02252 nitrate reductase [NA 24.9 99 0.0021 37.3 5.0 36 469-505 843-879 (888)
126 COG5178 PRP8 U5 snRNP spliceos 24.6 58 0.0013 40.1 2.9 13 490-502 474-486 (2365)
127 cd01971 Nitrogenase_VnfN_like 24.0 88 0.0019 34.0 4.1 66 455-523 62-128 (427)
128 KOG2893 Zn finger protein [Gen 23.9 7.2E+02 0.016 25.7 10.0 23 31-53 55-79 (341)
129 PTZ00306 NADH-dependent fumara 23.5 64 0.0014 39.9 3.2 25 482-506 1129-1153(1167)
130 cd01965 Nitrogenase_MoFe_beta_ 22.9 79 0.0017 34.3 3.5 69 455-523 57-128 (428)
131 cd01966 Nitrogenase_NifN_1 Nit 22.7 66 0.0014 35.0 2.8 69 455-523 57-128 (417)
132 KOG0391 SNF2 family DNA-depend 22.3 1.8E+02 0.0039 36.5 6.3 7 158-164 1903-1909(1958)
133 KOG1984 Vesicle coat complex C 22.2 2.5E+02 0.0055 33.8 7.4 11 399-409 457-467 (1007)
134 cd01968 Nitrogenase_NifE_I Nit 21.6 94 0.002 33.5 3.7 67 454-522 61-128 (410)
135 TIGR01279 DPOR_bchN light-inde 20.5 1.4E+02 0.0031 32.3 4.8 68 454-523 58-127 (407)
136 PF00667 FAD_binding_1: FAD bi 20.4 88 0.0019 30.7 2.9 29 28-56 174-202 (219)
No 1
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=9.4e-62 Score=541.80 Aligned_cols=361 Identities=30% Similarity=0.531 Sum_probs=282.1
Q ss_pred ecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 009819 8 PIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPE 87 (524)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (524)
++...++|+||||+||+++.++++|||||||+|+|+.+++.++++||+.|+||++|++++....+.+..
T Consensus 332 ~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~~----------- 400 (722)
T PLN02844 332 PKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETN----------- 400 (722)
T ss_pred ECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCCC-----------
Confidence 455689999999999999999999999999999886556789999999999999999988654221000
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 88 GHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 167 (524)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (524)
T Consensus 401 -------------------------------------------------------------------------------- 400 (722)
T PLN02844 401 -------------------------------------------------------------------------------- 400 (722)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEec
Q 009819 168 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAG 247 (524)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAG 247 (524)
.. .++++.|+||||.+..+...+++++||||
T Consensus 401 --------------------------------------------~~-----~~~~v~VeGPYG~~s~~~~~~~~lVLIAG 431 (722)
T PLN02844 401 --------------------------------------------QM-----NCIPVAIEGPYGPASVDFLRYDSLLLVAG 431 (722)
T ss_pred --------------------------------------------cc-----cceEEEEECCccCCCCCccCCCeEEEEEc
Confidence 00 12589999999998766667899999999
Q ss_pred CcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCCCC--cc
Q 009819 248 GIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPL--EE 325 (524)
Q Consensus 248 GiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~~~--~~ 325 (524)
|+||||++|+++++.++.+.. ....++|+|+|++|+.+|+.|++++..++..+. .+..++++++|+||+..... ++
T Consensus 432 GiGITPfLSiLrdl~~~~~~~-~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~-~~~~~lkl~iyVTRE~~~~~rl~~ 509 (722)
T PLN02844 432 GIGITPFLSILKEIASQSSSR-YRFPKRVQLIYVVKKSQDICLLNPISSLLLNQS-SNQLNLKLKVFVTQEEKPNATLRE 509 (722)
T ss_pred CcCHHHHHHHHHHHHhccccc-cCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhH-HHhcCceEEEEECCCCCCCCchhh
Confidence 999999999999998642211 123468999999999999999998875543221 23348999999999876422 11
Q ss_pred cccccccc--cccCCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCCCch----------------
Q 009819 326 GELHKTMS--SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHS---------------- 387 (524)
Q Consensus 326 ~~i~~~~~--~~~~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~~~s---------------- 387 (524)
...+.++. .++.| +.+++++||++||+|++++|++||++|+++++++++||| |.|..+
T Consensus 510 ~i~~~~~~~~~~~~~---~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~ 585 (722)
T PLN02844 510 LLNQFSQVQTVNFST---KCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFI-PSEHKSHSGVKMAASGEMKTAK 585 (722)
T ss_pred HhhccchhhhcCCCC---CCCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEe-ccccccccchhccccccccccc
Confidence 00000111 12222 456799999999999999999999999999999999999 555333
Q ss_pred ----hhHHHHHHHHHHhhheeeccceeeeehhhhhhhhccccc-CCCCcccccccccccccccccccccCCCcccccccC
Q 009819 388 ----WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYG 462 (524)
Q Consensus 388 ----~~~~~~l~l~~m~~gV~v~g~~vi~~w~~~~~~~~~~~s-~~~~~ie~~~p~~~~~~~~~~~~~~~L~~~~~V~~G 462 (524)
||++++++++||++||++ ||+|+.+|+ |+|++++.+. .+++.++. ....++ ....+.+..++|||
T Consensus 586 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~g 655 (722)
T PLN02844 586 EKTPSWVVDLLLIVSFIIAITC-STFVAIILR-WRRLKKEIPRVSQKQGIKP----EEGSME----KRGPVLEEHEIHFG 655 (722)
T ss_pred CCCchHHHHHHHHHHHHHHhee-cceEeEeee-ccccccCCccccccccCCC----CCcccc----ccccccccceeecC
Confidence 999999999999999988 999999999 7777655443 22222221 111222 22334567899999
Q ss_pred CCCChHHHHHhhhcccCCceEEEEEeCChhhHHHHHHHHHhccc-----cccCCCceEEEEEeeccC
Q 009819 463 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSL-----MRECHDPIFHFHSHSFDL 524 (524)
Q Consensus 463 ~RPdl~~I~~~~~~~~~~~~VGVfvCGP~sL~~~Va~~c~~~n~-----~~~~~~~~f~fHsEsF~L 524 (524)
+|||++|||.++.+++++++|||+||||++||++||++||++|. .+.+.++.|||||.||+|
T Consensus 656 ~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f~l 722 (722)
T PLN02844 656 GRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFTL 722 (722)
T ss_pred CCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeecccCC
Confidence 99999999999999999999999999999999999999999997 456667889999999997
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=4.3e-61 Score=534.43 Aligned_cols=354 Identities=31% Similarity=0.526 Sum_probs=284.3
Q ss_pred CCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 009819 10 KTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGH 89 (524)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (524)
.+.++|+||||+||+++..+.+|||||||+|+|++++++++++||+.|+||++|++.+....
T Consensus 330 ~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g------------------ 391 (699)
T PLN02631 330 TPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSI------------------ 391 (699)
T ss_pred CCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCC------------------
Confidence 45799999999999999999999999999999875568999999999999999998774210
Q ss_pred CCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 90 PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 169 (524)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (524)
T Consensus 392 -------------------------------------------------------------------------------- 391 (699)
T PLN02631 392 -------------------------------------------------------------------------------- 391 (699)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCc
Q 009819 170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGI 249 (524)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGi 249 (524)
..+++.+|||||.+..+..+++++||||||+
T Consensus 392 -------------------------------------------------~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGs 422 (699)
T PLN02631 392 -------------------------------------------------DSLEVSTEGPYGPNSFDVSRHNSLILVSGGS 422 (699)
T ss_pred -------------------------------------------------CeeEEEEECCCCCCCCCcCCCCcEEEEEeCc
Confidence 1247999999998765555788999999999
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCCCCcccccc
Q 009819 250 GISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELH 329 (524)
Q Consensus 250 GITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~~~~~~~i~ 329 (524)
||||++|++++++++..+. ..+.++|+|+|++|+.+|+.+.+++..........+..++++++|+||+++.. ++++..
T Consensus 423 GITP~lSiL~~ll~~~~~~-~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~~~-~~~~~~ 500 (699)
T PLN02631 423 GITPFISVIRELIFQSQNP-STKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP-ETTDDH 500 (699)
T ss_pred ChHhHHHHHHHHHhccccc-ccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCCCc-cccccc
Confidence 9999999999998753211 12345899999999999998666654321111112345899999999987654 323333
Q ss_pred cc-cccccCCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCC-----CchhhHHHHHHHHHHhhhe
Q 009819 330 KT-MSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGLLFLACMVGGV 403 (524)
Q Consensus 330 ~~-~~~~~~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~-----~~s~~~~~~l~l~~m~~gV 403 (524)
+. ...|++|.++|++++.+.|++||+|++++|++||++|++++|++++|||+|.| .++||.++++.++.. ++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~--~~ 578 (699)
T PLN02631 501 RLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLWDMFLG--SV 578 (699)
T ss_pred ccccccccccCCCCCCceeeecCCccHHHHHHHHHHHHHHHHHHHhhheeEecccCCCCCcccchHHHHHHHHHHH--Hh
Confidence 32 45679999999999999999999999999999999999999999999999999 567999999999443 34
Q ss_pred eec-cceeeeehhhhhhhhccccc-CCCCccccccc-cccc------ccccccccccCCCcccccccCCCCChHHHHHhh
Q 009819 404 LIF-GGTVIGFWHLWERKSSAREN-YKDDSIEVDNA-QNVG------TMAHNDIRKKDTKSSTNILYGSRPDFKEIFGST 474 (524)
Q Consensus 404 ~v~-g~~vi~~w~~~~~~~~~~~s-~~~~~ie~~~p-~~~~------~~~~~~~~~~~L~~~~~V~~G~RPdl~~I~~~~ 474 (524)
+|| |+.++.+||.+++.+.+++. ++++.+|+.+| ..++ ..+.++.+.+.+.+.+++|||+|||+++||.
T Consensus 579 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~-- 656 (699)
T PLN02631 579 CIFISSSIVFLWRKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILL-- 656 (699)
T ss_pred heeccceeeeeechhhccccccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeecCCCCHHHHHH--
Confidence 445 88899999987776544332 46677775554 2223 5566777888888999999999999999998
Q ss_pred hcccCCceEEEEEeCChhhHHHHHHHHHhccccccCCCceEEEEEeecc
Q 009819 475 SKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 523 (524)
Q Consensus 475 ~~~~~~~~VGVfvCGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF~ 523 (524)
++..+++|||+||||++|+++||++|++.+. ..|||||.||+
T Consensus 657 -~~~~~~~vgvlv~gp~~~~~~va~~c~s~~~------~~~~f~s~sf~ 698 (699)
T PLN02631 657 -EAEGSEDVGVMVCGPRKMRHEVAKICSSGLA------KNLHFEAISFN 698 (699)
T ss_pred -hccCCCceeEEEECcHHHHHHHHHHHhcCCC------cceeEEeeccc
Confidence 4455679999999999999999999999762 45999999997
No 3
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=6.9e-61 Score=533.50 Aligned_cols=347 Identities=29% Similarity=0.481 Sum_probs=282.3
Q ss_pred CCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 009819 10 KTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGH 89 (524)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (524)
...++|+||||+||+++.++.+||||||++|+|++++++++++||+.|+||++|++.+...+..
T Consensus 347 ~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~gd~i---------------- 410 (702)
T PLN02292 347 NPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSSSDQI---------------- 410 (702)
T ss_pred CCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCCCCcc----------------
Confidence 3468999999999999999999999999999986556789999999999999999887433110
Q ss_pred CCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 90 PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 169 (524)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (524)
T Consensus 411 -------------------------------------------------------------------------------- 410 (702)
T PLN02292 411 -------------------------------------------------------------------------------- 410 (702)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCc
Q 009819 170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGI 249 (524)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGi 249 (524)
.++++.|+||||.+..+...+++++|||||+
T Consensus 411 -------------------------------------------------~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGi 441 (702)
T PLN02292 411 -------------------------------------------------DRLAVSVEGPYGPASTDFLRHESLVMVSGGS 441 (702)
T ss_pred -------------------------------------------------ccceEEEECCccCCccccccCCcEEEEEecc
Confidence 1247999999999876555678999999999
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc-CCcccCCCceEEEEEEcCCCCCCCccccc
Q 009819 250 GISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI-CPFFSDKLNLETFIYVTRETEPPLEEGEL 328 (524)
Q Consensus 250 GITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell-~~~~~~~~~l~I~IyVTr~~~~~~~~~~i 328 (524)
||||+++++++++++..+ ..++.++++|+|++|+.+|+.|++++.+++. ....++..++++++|+|++++++.+.+..
T Consensus 442 GITP~lsil~~L~~~~~~-~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~ 520 (702)
T PLN02292 442 GITPFISIIRDLIYTSST-ETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTG 520 (702)
T ss_pred CHHHHHHHHHHHHhcccc-ccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCccccc
Confidence 999999999999875221 1122478999999999999999887776642 11122456899999999988766544445
Q ss_pred cccccccc--CCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCC----CchhhHHHHHHHHHHhhh
Q 009819 329 HKTMSSSI--YPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN----IHSWWYKGLLFLACMVGG 402 (524)
Q Consensus 329 ~~~~~~~~--~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~----~~s~~~~~~l~l~~m~~g 402 (524)
+++|+++. +|.+++++++++||++||+|++++|++||++|++++|++++|||+|.| .++||.++++.+++||+|
T Consensus 521 ~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (702)
T PLN02292 521 NMNIIKTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYTLAYKSLIYLLVISIS 600 (702)
T ss_pred chhhhhhhcCCCCCCCCceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhheeEeccccCCCCCCccHHHHHHHHHHHHHH
Confidence 66776554 555569999999999999999999999999999999999999999999 455999999999999999
Q ss_pred eeeccceeeeehhhhhhhhccc-ccCCCCcccccccccccccccccccccCCCcccccccCCCCChHHHHHhhhcccCCc
Q 009819 403 VLIFGGTVIGFWHLWERKSSAR-ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHV 481 (524)
Q Consensus 403 V~v~g~~vi~~w~~~~~~~~~~-~s~~~~~ie~~~p~~~~~~~~~~~~~~~L~~~~~V~~G~RPdl~~I~~~~~~~~~~~ 481 (524)
|++ |+.++.+||. +++++ +..+.+.. ....+.++.+.+.+.+.+++|||+|||+++|| ++++++
T Consensus 601 i~~-~~~~~~~w~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~----~~~~~~ 665 (702)
T PLN02292 601 VVA-TSTAAMLWNK---KKYYKKSSQQVDNV-------DSPREIESSPQQLLVQRTNIHYGERPNLNKLL----VGLKGS 665 (702)
T ss_pred hhh-hhhHHHhhcc---cccccchhcccccc-------ccccccccCcccccccceeeeccCCCCHHHHH----HhcCCC
Confidence 998 8888889986 22222 22222222 12356667788888899999999999999999 455689
Q ss_pred eEEEEEeCChhhHHHHHHHHHhccccccCCCceEEEEEeecc
Q 009819 482 DVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 523 (524)
Q Consensus 482 ~VGVfvCGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF~ 523 (524)
+|||+||||++|+++||++|++.+. ..|||||.||+
T Consensus 666 ~vgvlv~gp~~~~~~va~~c~s~~~------~~~~~~s~sf~ 701 (702)
T PLN02292 666 SVGVLVCGPKKMRQKVAKICSSGLA------ENLHFESISFS 701 (702)
T ss_pred ceeEEEECcHHHHHHHHHHHhcCCC------cceeEEeeccc
Confidence 9999999999999999999999762 45999999997
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-39 Score=362.47 Aligned_cols=266 Identities=31% Similarity=0.524 Sum_probs=203.1
Q ss_pred EEEeecC-CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCC
Q 009819 4 CGIGPIK-TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPP 82 (524)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (524)
.++..+| +.|+|++|||+|++||.++.+|||||||+|+| ++++++++||+.|+||++|++++.+.+... +.
T Consensus 370 i~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~-~~----- 441 (646)
T KOG0039|consen 370 LELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKALGDWTEKLRNAFSEVSQPP-ES----- 441 (646)
T ss_pred EEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEecCcHHHHHHHHHhhhcccc-cc-----
Confidence 4566666 69999999999999999999999999999999 348999999999999999999998532210 00
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 83 VPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP 162 (524)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (524)
T Consensus 442 -------------------------------------------------------------------------------- 441 (646)
T KOG0039|consen 442 -------------------------------------------------------------------------------- 441 (646)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccE
Q 009819 163 PPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENL 242 (524)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~v 242 (524)
++ . . ..+++.||||||....+..+|+++
T Consensus 442 --------------------------------------~~--------~-~-----~~~~i~IdGPYG~~s~d~~~~e~~ 469 (646)
T KOG0039|consen 442 --------------------------------------DK--------S-Y-----PFPKILIDGPYGAPSQDVFKYEVL 469 (646)
T ss_pred --------------------------------------cc--------c-c-----cCceEEEECCCCCCchhhhhcceE
Confidence 00 0 0 125899999999999899999999
Q ss_pred EEEecCcChHHHHHHHHHHHHHhhcCC----------CCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEE
Q 009819 243 ILVAGGIGISPFLAILSDILHRINEGK----------SCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETF 312 (524)
Q Consensus 243 VLIAGGiGITP~lSiL~~Ll~~~~~~~----------~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~ 312 (524)
+||+||+|+||++|++++++.+.+.+. ..+.++++|+|.+|+..++.|+.+++.+.... ....-++++
T Consensus 470 vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~--~~~~~~e~~ 547 (646)
T KOG0039|consen 470 VLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEY--DSSGVIELH 547 (646)
T ss_pred EEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHHH--HhcCCchhh
Confidence 999999999999999999998865443 23678899999999999999999999885431 123348899
Q ss_pred EEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCCCchhhHHH
Q 009819 313 IYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKG 392 (524)
Q Consensus 313 IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~~~s~~~~~ 392 (524)
.|+|+.....+... ++
T Consensus 548 ~~~t~~~~~~d~~~----~~------------------------------------------------------------ 563 (646)
T KOG0039|consen 548 NYVTSSYEEGDARS----AL------------------------------------------------------------ 563 (646)
T ss_pred eehhHhHhhhhhhh----HH------------------------------------------------------------
Confidence 99987544211110 00
Q ss_pred HHHHHHHhhheeeccceeeeehhhhhhhhcccccCCCCcccccccccccccccccccccCCCcccccccCCCCChHHHHH
Q 009819 393 LLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFG 472 (524)
Q Consensus 393 ~l~l~~m~~gV~v~g~~vi~~w~~~~~~~~~~~s~~~~~ie~~~p~~~~~~~~~~~~~~~L~~~~~V~~G~RPdl~~I~~ 472 (524)
+-|+ ++...++ ...++ .+++. ..+|+| ||||+++|+
T Consensus 564 ----~~~~-----------------~~~~~~~---~~~di-----------------~~g~~--~~~~~g-RPn~~~~~~ 599 (646)
T KOG0039|consen 564 ----IQMV-----------------QKLLHAK---NGVDI-----------------VTGLK--VETHFG-RPNWKEVFK 599 (646)
T ss_pred ----HHHH-----------------Hhhcccc---cCccc-----------------cccce--eeeeCC-CCCHHHHHH
Confidence 0000 0000011 01111 12222 577887 999999999
Q ss_pred hhhcccCCceEEEEEeCChhhHHHHHHHHHhccccccCCCceEEEEEeec
Q 009819 473 STSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 522 (524)
Q Consensus 473 ~~~~~~~~~~VGVfvCGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF 522 (524)
++++.+++.+||||+|||++|.+++++.|++++.. ..+.|+||+|+|
T Consensus 600 ~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~---~~~~~~f~~E~F 646 (646)
T KOG0039|consen 600 EIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSS---TATRFEFHKENF 646 (646)
T ss_pred HHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccc---cCceeeeeeccC
Confidence 99999998889999999999999999999998764 346799999998
No 5
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=4.1e-28 Score=232.70 Aligned_cols=140 Identities=31% Similarity=0.535 Sum_probs=111.5
Q ss_pred CCCccCCCcEEEEEeCCC-CCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 009819 11 TYLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGH 89 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (524)
..++|+||||+||+++.. +.++||||||+|++.+..++++|+||+.+++|.++.+.+.......
T Consensus 21 ~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~~~~~--------------- 85 (210)
T cd06186 21 KPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKSPGGG--------------- 85 (210)
T ss_pred CCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhCcCCC---------------
Confidence 478999999999999998 7889999999999865357899999999445556666655331100
Q ss_pred CCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 90 PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 169 (524)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (524)
T Consensus 86 -------------------------------------------------------------------------------- 85 (210)
T cd06186 86 -------------------------------------------------------------------------------- 85 (210)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCc
Q 009819 170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGI 249 (524)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGi 249 (524)
...++.|+||||.+......+++++|||||+
T Consensus 86 -------------------------------------------------~~~~v~v~GP~G~~~~~~~~~~~~vliagG~ 116 (210)
T cd06186 86 -------------------------------------------------VSLKVLVEGPYGSSSEDLLSYDNVLLVAGGS 116 (210)
T ss_pred -------------------------------------------------ceeEEEEECCCCCCccChhhCCeEEEEeccc
Confidence 1247999999999974445789999999999
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819 250 GISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK 296 (524)
Q Consensus 250 GITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ 296 (524)
||||+++++++++.+.++ ....++|+|+|++|+.+++.|+.+++.
T Consensus 117 GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~~~~~l~ 161 (210)
T cd06186 117 GITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEWFLDELR 161 (210)
T ss_pred cHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHHHHHHHH
Confidence 999999999999876321 113578999999999999889988775
No 6
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=3.8e-24 Score=206.64 Aligned_cols=152 Identities=28% Similarity=0.444 Sum_probs=117.2
Q ss_pred CeeEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCC
Q 009819 1 MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPP 80 (524)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (524)
+|++.+.+.+..+.|+||||++|+++..+..++|||||+|.|.+ ++.++|+||+.|.+|+.|.+.+...
T Consensus 9 ~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~G~~t~~l~~~l~~G---------- 77 (216)
T cd06198 9 TTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKALGDYTRRLAERLKPG---------- 77 (216)
T ss_pred eEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeCChHHHHHHHhCCCC----------
Confidence 36677777665589999999999998766788999999999854 3689999999999999887543211
Q ss_pred CCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 81 PPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG 160 (524)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (524)
T Consensus 78 -------------------------------------------------------------------------------- 77 (216)
T cd06198 78 -------------------------------------------------------------------------------- 77 (216)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccc
Q 009819 161 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYE 240 (524)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~ 240 (524)
-+|.|+||||.+.... .++
T Consensus 78 ------------------------------------------------------------~~v~i~gP~G~~~~~~-~~~ 96 (216)
T cd06198 78 ------------------------------------------------------------TRVTVEGPYGRFTFDD-RRA 96 (216)
T ss_pred ------------------------------------------------------------CEEEEECCCCCCcccc-cCc
Confidence 1578999999986654 378
Q ss_pred cEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEc
Q 009819 241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT 316 (524)
Q Consensus 241 ~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVT 316 (524)
+++|||||+||||+++|+++++.+ . ..++++|+|++|+.+++.+. +.++++.. +. +++++++.+
T Consensus 97 ~~vlia~GtGiap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~~-~~l~~l~~----~~-~~~~~~~~~ 160 (216)
T cd06198 97 RQIWIAGGIGITPFLALLEALAAR---G---DARPVTLFYCVRDPEDAVFL-DELRALAA----AA-GVVLHVIDS 160 (216)
T ss_pred eEEEEccccCHHHHHHHHHHHHhc---C---CCceEEEEEEECCHHHhhhH-HHHHHHHH----hc-CeEEEEEeC
Confidence 999999999999999999998764 1 14689999999999987554 44455422 22 566665444
No 7
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.5e-24 Score=219.74 Aligned_cols=141 Identities=27% Similarity=0.423 Sum_probs=111.7
Q ss_pred ecCCCCccCCCcEEEEEeCCCC-CccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009819 8 PIKTYLRYNALSFFFLQVRELS-WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPP 86 (524)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (524)
-.+..+ |+||||.||.+.... ..--|||||+++. ++ ++++|.||..||+|++|.|-++..
T Consensus 237 l~~~~~-~qaGQFAfLk~~~~~~~~~~HPFTIa~s~-~~-sel~FsIK~LGD~Tk~l~dnLk~G---------------- 297 (438)
T COG4097 237 LQGPWL-YQAGQFAFLKIEIEEFRMRPHPFTIACSH-EG-SELRFSIKALGDFTKTLKDNLKVG---------------- 297 (438)
T ss_pred cCCccc-ccCCceEEEEeccccccCCCCCeeeeeCC-CC-ceEEEEehhhhhhhHHHHHhccCC----------------
Confidence 445666 999999999998754 4568999999884 44 489999999999999999866432
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 87 EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLP 166 (524)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (524)
T Consensus 298 -------------------------------------------------------------------------------- 297 (438)
T COG4097 298 -------------------------------------------------------------------------------- 297 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEe
Q 009819 167 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVA 246 (524)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIA 246 (524)
-++.||||||.|..+. .-.+.|+||
T Consensus 298 ------------------------------------------------------~k~~vdGPYG~F~~~~-g~~~QVWIA 322 (438)
T COG4097 298 ------------------------------------------------------TKLEVDGPYGKFDFER-GLNTQVWIA 322 (438)
T ss_pred ------------------------------------------------------ceEEEecCcceeeccc-CCcccEEEe
Confidence 1699999999996653 224599999
Q ss_pred cCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEE
Q 009819 247 GGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFI 313 (524)
Q Consensus 247 GGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~I 313 (524)
||||||||+|+++.+..+. ..+.|+|+|++|+.++..+.++ ++.+ +++.+++.+|+
T Consensus 323 GGIGITPFis~l~~l~~~~------s~~~V~L~Y~~~n~e~~~y~~e-Lr~~----~qkl~~~~lHi 378 (438)
T COG4097 323 GGIGITPFISMLFTLAERK------SDPPVHLFYCSRNWEEALYAEE-LRAL----AQKLPNVVLHI 378 (438)
T ss_pred cCcCcchHHHHHHhhcccc------cCCceEEEEEecCCchhHHHHH-HHHH----HhcCCCeEEEE
Confidence 9999999999999987641 2568999999999999865554 4443 23567788887
No 8
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=8.9e-23 Score=200.49 Aligned_cols=89 Identities=26% Similarity=0.294 Sum_probs=68.2
Q ss_pred EEEEe-CcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819 222 TASVE-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~Vd-GPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell 299 (524)
.+.+. ||||.+..+.. ..++++|||||+||||+++|+++++.. + ..++|+|+|++|+.+++. +.++++++.
T Consensus 82 ~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~---~---~~~~v~l~~~~r~~~d~~-~~~el~~l~ 154 (241)
T cd06195 82 TIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW---E---RFDKIVLVHGVRYAEELA-YQDEIEALA 154 (241)
T ss_pred EEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh---C---CCCcEEEEEccCCHHHhh-hHHHHHHHH
Confidence 58889 99999865543 468999999999999999999998754 1 246899999999999985 455555543
Q ss_pred CCcccCCCceEEEEEEcCCCC
Q 009819 300 CPFFSDKLNLETFIYVTRETE 320 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyVTr~~~ 320 (524)
. ....++++++++|+.+.
T Consensus 155 ~---~~~~~~~~~~~~s~~~~ 172 (241)
T cd06195 155 K---QYNGKFRYVPIVSREKE 172 (241)
T ss_pred h---hcCCCEEEEEEECcCCc
Confidence 2 11457899888887543
No 9
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.90 E-value=1.1e-22 Score=198.76 Aligned_cols=67 Identities=24% Similarity=0.447 Sum_probs=53.8
Q ss_pred EEEEeCcccCCCCCc---cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819 222 TASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 293 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~---~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e 293 (524)
++.|+||||.+.... ..+++++||||||||||+++|+++++... ...++|+|+|++|+.+++.+.++
T Consensus 105 ~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~-----~~~~~v~l~~~~r~~~~~~~~~e 174 (220)
T cd06197 105 EVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSR-----NTTWDITLLWSLREDDLPLVMDT 174 (220)
T ss_pred eEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcc-----cCCCcEEEEEEecchhhHHHHHH
Confidence 688999999987543 34678999999999999999999988641 12468999999999998754333
No 10
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.90 E-value=1.3e-22 Score=197.19 Aligned_cols=87 Identities=14% Similarity=0.274 Sum_probs=67.1
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|.||||.+.......++++|||||+||||+++|++++++. + ..++++|+|++|+.+++.+.+ +++++.+
T Consensus 86 ~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~~~-~l~~l~~- 157 (231)
T cd06215 86 ELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDT---R---PDADIVFIHSARSPADIIFAD-ELEELAR- 157 (231)
T ss_pred EEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhc---C---CCCcEEEEEecCChhhhhHHH-HHHHHHH-
Confidence 5889999999865443468999999999999999999998764 1 246799999999999986544 4455422
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
+..++++++++|+.+
T Consensus 158 ---~~~~~~~~~~~~~~~ 172 (231)
T cd06215 158 ---RHPNFRLHLILEQPA 172 (231)
T ss_pred ---HCCCeEEEEEEccCC
Confidence 345788888888644
No 11
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.90 E-value=2e-22 Score=196.72 Aligned_cols=87 Identities=21% Similarity=0.366 Sum_probs=67.1
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|+||||.+......+++++|||||+||||+++|+++++.. + ..++++|+|++|+.+++.|. ++++++.
T Consensus 86 ~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~~-~~l~~l~-- 156 (232)
T cd06212 86 PVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAAS---G---SDRPVRFFYGARTARDLFYL-EEIAALG-- 156 (232)
T ss_pred EEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhc---C---CCCcEEEEEeccchHHhccH-HHHHHHH--
Confidence 5889999999976544568999999999999999999998864 1 24579999999999998654 4445432
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
....+++++.++++..
T Consensus 157 --~~~~~~~~~~~~s~~~ 172 (232)
T cd06212 157 --EKIPDFTFIPALSESP 172 (232)
T ss_pred --HhCCCEEEEEEECCCC
Confidence 2345688877777643
No 12
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.90 E-value=1.1e-23 Score=193.23 Aligned_cols=80 Identities=44% Similarity=0.689 Sum_probs=60.1
Q ss_pred cccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCC
Q 009819 239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 318 (524)
Q Consensus 239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~ 318 (524)
|+++||||||+||||+++++++++.+.+++ ....++|+|+|++|+.+++.|+.++++++.+.... .++++++|+|+.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~-~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~--~~~~~~iyvT~~ 77 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRG-SSRTRRIKLVWVVRDADELEWFSPELNELLELDRL--GNVEVHIYVTRE 77 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT------EEEEEEEES-TTTTHHHHHHHHHHHHHHHH--TSEEEEEEETT-
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccc-cccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc--ccceEEEEEcCC
Confidence 689999999999999999999999876522 34578999999999999999999888776442222 589999999998
Q ss_pred CCC
Q 009819 319 TEP 321 (524)
Q Consensus 319 ~~~ 321 (524)
...
T Consensus 78 ~~~ 80 (156)
T PF08030_consen 78 SSA 80 (156)
T ss_dssp ---
T ss_pred ccc
Confidence 763
No 13
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.90 E-value=1.4e-22 Score=196.98 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=67.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|.||||.+......+++++|||||+||||+++++++++.+. ..++++|+|++|+.+++.|. ++++++.
T Consensus 81 ~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~-~~l~~l~-- 151 (224)
T cd06189 81 LVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDLYLD-ELLEAWA-- 151 (224)
T ss_pred EEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhccCH-HHHHHHH--
Confidence 58899999999765445789999999999999999999998651 24679999999999998554 4445532
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
.+..++++++++++.+
T Consensus 152 --~~~~~~~~~~~~s~~~ 167 (224)
T cd06189 152 --EAHPNFTYVPVLSEPE 167 (224)
T ss_pred --HhCCCeEEEEEeCCCC
Confidence 2346788888887643
No 14
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=3e-22 Score=195.73 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=66.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|.||||.+......+++++|||||+||||+++|+++++.+ . ..++++|+|++|+.+++.+ .++++++.
T Consensus 91 ~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~-~~~l~~l~-- 161 (236)
T cd06210 91 RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEW---G---EPQEARLFFGVNTEAELFY-LDELKRLA-- 161 (236)
T ss_pred EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhc---C---CCceEEEEEecCCHHHhhh-HHHHHHHH--
Confidence 5889999999865544567899999999999999999998764 1 2357999999999999855 44455542
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
....++++++++++.
T Consensus 162 --~~~~~~~~~~~~s~~ 176 (236)
T cd06210 162 --DSLPNLTVRICVWRP 176 (236)
T ss_pred --HhCCCeEEEEEEcCC
Confidence 244678888888764
No 15
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.89 E-value=5.4e-22 Score=195.43 Aligned_cols=87 Identities=23% Similarity=0.367 Sum_probs=68.0
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|+||||.+......+++++|||||+||||+++++++++.+ . ..++++|+|++|+.+++. +.++++++.
T Consensus 96 ~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~---~---~~~~i~l~~~~r~~~~~~-~~~~l~~l~-- 166 (247)
T cd06184 96 VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE---G---PGRPVTFIHAARNSAVHA-FRDELEELA-- 166 (247)
T ss_pred EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc---C---CCCcEEEEEEcCchhhHH-HHHHHHHHH--
Confidence 6889999999866543568999999999999999999999864 1 246799999999999975 455555542
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
....++++++++++..
T Consensus 167 --~~~~~~~~~~~~s~~~ 182 (247)
T cd06184 167 --ARLPNLKLHVFYSEPE 182 (247)
T ss_pred --hhCCCeEEEEEECCCC
Confidence 2346788888888653
No 16
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.89 E-value=4.7e-22 Score=193.95 Aligned_cols=88 Identities=25% Similarity=0.355 Sum_probs=68.4
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|+||||.+.......++++|||||+||||+++|+++++... ..++++|+|++|+.+++.|. ++++++.
T Consensus 85 ~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~l~-- 155 (231)
T cd06191 85 TVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA------PESDFTLIHSARTPADMIFA-QELRELA-- 155 (231)
T ss_pred EEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEecCCHHHHhHH-HHHHHHH--
Confidence 58899999998655445578999999999999999999987641 24679999999999998654 4445532
Q ss_pred cccCCCceEEEEEEcCCCC
Q 009819 302 FFSDKLNLETFIYVTRETE 320 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~~ 320 (524)
....++++++++|+++.
T Consensus 156 --~~~~~~~~~~~~s~~~~ 172 (231)
T cd06191 156 --DKPQRLRLLCIFTRETL 172 (231)
T ss_pred --HhCCCeEEEEEECCCCC
Confidence 23567999998887643
No 17
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=1.1e-21 Score=189.78 Aligned_cols=86 Identities=27% Similarity=0.422 Sum_probs=66.3
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|.||||.+......+++++|||||+||||+++|++++..+ + ..++|+|+|++|+.+++.+.+++ +++.
T Consensus 81 ~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~---~---~~~~v~l~~~~~~~~~~~~~~~l-~~~~-- 151 (224)
T cd06187 81 RVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRR---G---EPRPVHLFFGARTERDLYDLEGL-LALA-- 151 (224)
T ss_pred EEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhc---C---CCCCEEEEEecCChhhhcChHHH-HHHH--
Confidence 5889999999876544468899999999999999999998764 1 24689999999999998665544 3332
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
.+..++++++++++.
T Consensus 152 --~~~~~~~~~~~~~~~ 166 (224)
T cd06187 152 --ARHPWLRVVPVVSHE 166 (224)
T ss_pred --HhCCCeEEEEEeCCC
Confidence 244568887777754
No 18
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=9.1e-22 Score=191.71 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=64.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|+||||.+.... ..++++|||||+||||+++|+++++++ + ..++++|+|++|+.+++.+.+ +++++..
T Consensus 84 ~v~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~---~---~~~~i~l~~~~r~~~~~~~~~-~l~~l~~- 154 (227)
T cd06213 84 RLTVRGPFGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAA---G---TKRDVTLLFGARTQRDLYALD-EIAAIAA- 154 (227)
T ss_pred EEEEeCCCcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhc---C---CCCcEEEEEeeCCHHHhccHH-HHHHHHH-
Confidence 588999999997543 447899999999999999999998764 1 245799999999999985544 4444321
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
....+++++.+++++
T Consensus 155 --~~~~~~~~~~~~s~~ 169 (227)
T cd06213 155 --RWRGRFRFIPVLSEE 169 (227)
T ss_pred --hccCCeEEEEEecCC
Confidence 123467887777764
No 19
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.89 E-value=7.5e-22 Score=193.81 Aligned_cols=87 Identities=24% Similarity=0.420 Sum_probs=67.2
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|+||||.+.......++++|||||+||||+++++++++++ + ..++|+|+|++|+.+++ ++.++++++.
T Consensus 92 ~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~-~~~~~l~~l~-- 162 (238)
T cd06211 92 ELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLER---G---DTRKITLFFGARTRAEL-YYLDEFEALE-- 162 (238)
T ss_pred EEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhc---C---CCCcEEEEEecCChhhh-ccHHHHHHHH--
Confidence 5889999999976543457899999999999999999998764 1 13579999999999998 4555555542
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
....+++++..+++..
T Consensus 163 --~~~~~~~~~~~~s~~~ 178 (238)
T cd06211 163 --KDHPNFKYVPALSREP 178 (238)
T ss_pred --HhCCCeEEEEEECCCC
Confidence 2345688888787653
No 20
>PRK08051 fre FMN reductase; Validated
Probab=99.89 E-value=7.9e-22 Score=193.60 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=66.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|+||||.++......+++||||||+||||+++|+++++.. + ..++++|+|++|+.+++ ++.++++++.
T Consensus 85 ~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~---~---~~~~v~l~~g~r~~~~~-~~~~el~~l~-- 155 (232)
T PRK08051 85 EIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQ---G---PNRPITLYWGGREEDHL-YDLDELEALA-- 155 (232)
T ss_pred EEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHh---C---CCCcEEEEEEeccHHHh-hhhHHHHHHH--
Confidence 6889999999976544567899999999999999999999864 1 24679999999999998 4555555543
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
.+..+++++..+++.
T Consensus 156 --~~~~~~~~~~~~~~~ 170 (232)
T PRK08051 156 --LKHPNLHFVPVVEQP 170 (232)
T ss_pred --HHCCCcEEEEEeCCC
Confidence 234568887776653
No 21
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.89 E-value=1.7e-21 Score=186.96 Aligned_cols=153 Identities=20% Similarity=0.295 Sum_probs=118.0
Q ss_pred eEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHHhcCCCCCCCCCCC
Q 009819 3 NCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSESDSQVGPP 80 (524)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~~~~~~~~~~~~~~ 80 (524)
+..+.+.. .++|.||||+.|+++.-+...+|||||+|.|.+ .+.++|+||.. |.+|+.|.+. + ..
T Consensus 12 ~~~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~~G~~s~~l~~~---~-~G------- 78 (223)
T cd00322 12 LFRLQLPN-GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVPGGPFSAWLHDL---K-PG------- 78 (223)
T ss_pred EEEEecCC-CCCcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeCCCchhhHHhcC---C-CC-------
Confidence 34444333 689999999999998766778999999999865 46899999998 9999888754 1 10
Q ss_pred CCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 81 PPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG 160 (524)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (524)
T Consensus 79 -------------------------------------------------------------------------------- 78 (223)
T cd00322 79 -------------------------------------------------------------------------------- 78 (223)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccc
Q 009819 161 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYE 240 (524)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~ 240 (524)
-++.|+||+|.++.....++
T Consensus 79 ------------------------------------------------------------~~v~i~gP~G~~~~~~~~~~ 98 (223)
T cd00322 79 ------------------------------------------------------------DEVEVSGPGGDFFLPLEESG 98 (223)
T ss_pred ------------------------------------------------------------CEEEEECCCcccccCcccCC
Confidence 16889999999965445678
Q ss_pred cEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCC
Q 009819 241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 241 ~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~ 319 (524)
+++|||||+||||+++|++++.... ..++++|+|++|+.+++.+.+ +++++. ....++++++++++..
T Consensus 99 ~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~-el~~l~----~~~~~~~~~~~~~~~~ 166 (223)
T cd00322 99 PVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFLD-ELEELA----KEGPNFRLVLALSRES 166 (223)
T ss_pred cEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHHH-HHHHHH----HhCCCeEEEEEecCCC
Confidence 9999999999999999999987641 246799999999999885544 444432 2345788888887643
No 22
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.88 E-value=1.9e-21 Score=191.30 Aligned_cols=86 Identities=22% Similarity=0.396 Sum_probs=66.0
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|+||||.+......+++++|||||+||||++++++++.... ..++++++|++|+.+++. +.++++++.
T Consensus 105 ~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------~~~~i~l~~~~r~~~~~~-~~~el~~l~-- 175 (243)
T cd06216 105 VVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------PTADVVLLYYARTREDVI-FADELRALA-- 175 (243)
T ss_pred EEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEEcCChhhhH-HHHHHHHHH--
Confidence 58899999997654434689999999999999999999987641 246799999999999874 445555542
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
++..++++++++|+.
T Consensus 176 --~~~~~~~~~~~~s~~ 190 (243)
T cd06216 176 --AQHPNLRLHLLYTRE 190 (243)
T ss_pred --HhCCCeEEEEEEcCC
Confidence 234568888877753
No 23
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.88 E-value=1.4e-21 Score=190.30 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=66.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|+||||.+.... ..++++|||||+||||+++++++++... ..++++|+|++|+.+++.+.+ +++++.
T Consensus 86 ~v~v~gP~G~~~~~~-~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~~~~~~~~-~l~~l~-- 155 (228)
T cd06209 86 RLTLTGPLGSFYLRE-VKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRDADLVELD-RLEALA-- 155 (228)
T ss_pred EEEEECCcccceecC-CCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCHHHhccHH-HHHHHH--
Confidence 578999999987643 3478999999999999999999987641 245799999999999986544 444432
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
....++++++++++.+
T Consensus 156 --~~~~~~~~~~~~s~~~ 171 (228)
T cd06209 156 --ERLPGFSFRTVVADPD 171 (228)
T ss_pred --HhCCCeEEEEEEcCCC
Confidence 2445789988888644
No 24
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.88 E-value=2.7e-21 Score=188.49 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=67.4
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|+||||.++......++++|||||+||||+++|++++++... ....+++|+|++|+.+++.+ .++++++.+
T Consensus 80 ~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~----~~~~~v~l~~~~r~~~~~~~-~~el~~l~~- 153 (232)
T cd06190 80 ELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY----LSDRPVDLFYGGRTPSDLCA-LDELSALVA- 153 (232)
T ss_pred EEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc----CCCCeEEEEEeecCHHHHhh-HHHHHHHHH-
Confidence 578999999997654446789999999999999999999876411 12468999999999999865 445555432
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
...++++++++++..
T Consensus 154 ---~~~~~~~~~~~s~~~ 168 (232)
T cd06190 154 ---LGARLRVTPAVSDAG 168 (232)
T ss_pred ---hCCCEEEEEEeCCCC
Confidence 345788888877643
No 25
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.88 E-value=1.8e-21 Score=188.52 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=67.0
Q ss_pred EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
+|.|+||||.++... ..+++++|||||+||||+++++++++.+ + ..++|+|+|++|+.+++. +.++++++.
T Consensus 79 ~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~-~~~el~~l~- 150 (222)
T cd06194 79 ALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ---G---HQGEIRLVHGARDPDDLY-LHPALLWLA- 150 (222)
T ss_pred EEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc---C---CCccEEEEEecCChhhcc-CHHHHHHHH-
Confidence 578999999997653 4567899999999999999999998764 1 246799999999999985 445555542
Q ss_pred CcccCCCceEEEEEEcCCC
Q 009819 301 PFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~ 319 (524)
....+++++.++++..
T Consensus 151 ---~~~~~~~~~~~~~~~~ 166 (222)
T cd06194 151 ---REHPNFRYIPCVSEGS 166 (222)
T ss_pred ---HHCCCeEEEEEEccCC
Confidence 2345788877777643
No 26
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.88 E-value=2e-21 Score=196.28 Aligned_cols=87 Identities=14% Similarity=0.294 Sum_probs=66.5
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|+||||.+... ...+++||||||+||||+++|+++++.... ..++|+|+|++|+.+++.+.+ +++++.
T Consensus 134 ~v~i~gP~G~f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~-----~~~~v~l~~g~r~~~d~~~~~-el~~l~-- 204 (283)
T cd06188 134 KVTASGPFGEFFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK-----SKRKISFWYGARSLKELFYQE-EFEALE-- 204 (283)
T ss_pred EEEEECcccccccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC-----CCceEEEEEecCCHHHhhHHH-HHHHHH--
Confidence 68899999999765 345789999999999999999999876411 136899999999999985544 445432
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
....++++++++|+..
T Consensus 205 --~~~~~~~~~~~~s~~~ 220 (283)
T cd06188 205 --KEFPNFKYHPVLSEPQ 220 (283)
T ss_pred --HHCCCeEEEEEECCCC
Confidence 2345788888777643
No 27
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.88 E-value=3.1e-21 Score=187.88 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=65.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|.||||.+.......++++|||||+||||+++++++++.. + ..++++|+|++|+.+++.+ .++++++.
T Consensus 90 ~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~---~---~~~~i~l~~~~r~~~~~~~-~~el~~~~-- 160 (235)
T cd06217 90 LLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDL---G---WPVPFRLLYSARTAEDVIF-RDELEQLA-- 160 (235)
T ss_pred EEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhc---C---CCceEEEEEecCCHHHhhH-HHHHHHHH--
Confidence 5889999999865433457899999999999999999998764 1 2467999999999999854 44444432
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
.+..++++++++|+.
T Consensus 161 --~~~~~~~~~~~~s~~ 175 (235)
T cd06217 161 --RRHPNLHVTEALTRA 175 (235)
T ss_pred --HHCCCeEEEEEeCCC
Confidence 234568888888764
No 28
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.88 E-value=3e-21 Score=199.52 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=67.5
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|+||||.++......++++|||||+||||+++|+++++.. + ..++|+|+|++|+.+++ +++++++++.
T Consensus 187 ~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~---~---~~~~i~l~~g~r~~~dl-~~~e~l~~~~-- 257 (339)
T PRK07609 187 ILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAK---G---IQRPVTLYWGARRPEDL-YLSALAEQWA-- 257 (339)
T ss_pred EEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhc---C---CCCcEEEEEecCChHHh-ccHHHHHHHH--
Confidence 5889999999976544567899999999999999999999864 1 24579999999999997 4555555432
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
.+..+++++.++++.
T Consensus 258 --~~~~~~~~~~~~s~~ 272 (339)
T PRK07609 258 --EELPNFRYVPVVSDA 272 (339)
T ss_pred --HhCCCeEEEEEecCC
Confidence 234578888888874
No 29
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.87 E-value=4.3e-21 Score=202.08 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=67.2
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|.||||.+..+....+++|||||||||||+++|+++++.+. ..++|+|+|++|+.+++.+ .++++++.
T Consensus 244 ~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~eL~~l~-- 314 (399)
T PRK13289 244 VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAARNGGVHAF-RDEVEALA-- 314 (399)
T ss_pred EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCChhhchH-HHHHHHHH--
Confidence 58899999998765445678999999999999999999987641 2468999999999999854 55555542
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
....+++++.++++.
T Consensus 315 --~~~~~~~~~~~~s~~ 329 (399)
T PRK13289 315 --ARHPNLKAHTWYREP 329 (399)
T ss_pred --HhCCCcEEEEEECCC
Confidence 244578888888754
No 30
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.87 E-value=3.7e-21 Score=198.77 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=63.1
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|.||+|.|.......++++|||||+||||+++|+++++.. + ..++|+|+|++|+.+++.+.+ +++++.
T Consensus 94 ~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~---~---~~~~v~l~y~~r~~~~~~~~~-el~~l~-- 164 (332)
T PRK10684 94 YLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKN---R---PQADVQVIFNVRTPQDVIFAD-EWRQLK-- 164 (332)
T ss_pred EEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhc---C---CCCCEEEEEeCCChHHhhhHH-HHHHHH--
Confidence 6889999999875544557899999999999999999998764 1 246899999999999986554 444432
Q ss_pred cccCCCceEEEEEEc
Q 009819 302 FFSDKLNLETFIYVT 316 (524)
Q Consensus 302 ~~~~~~~l~I~IyVT 316 (524)
.+..+++++++.+
T Consensus 165 --~~~~~~~~~~~~~ 177 (332)
T PRK10684 165 --QRYPQLNLTLVAE 177 (332)
T ss_pred --HHCCCeEEEEEec
Confidence 2344566665544
No 31
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.87 E-value=2.1e-20 Score=190.14 Aligned_cols=88 Identities=24% Similarity=0.464 Sum_probs=66.6
Q ss_pred EEEEeCcccCCCCC-ccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~-~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
+|.|+||||.++.. ....++++||||||||||+++|+++++.+. ...++|+|+|++|+.+++.+.+ +++++.
T Consensus 90 ~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~-----~~~~~v~l~~~~r~~~d~~~~d-eL~~l~- 162 (289)
T PRK08345 90 IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR-----WKYGNITLIYGAKYYEDLLFYD-ELIKDL- 162 (289)
T ss_pred EEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC-----CCCCcEEEEEecCCHHHhhHHH-HHHHHH-
Confidence 58899999985432 223468999999999999999999987641 1246899999999999986544 444432
Q ss_pred CcccCCCceEEEEEEcCCC
Q 009819 301 PFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~ 319 (524)
....+++++.++++++
T Consensus 163 ---~~~~~~~~~~~~s~~~ 178 (289)
T PRK08345 163 ---AEAENVKIIQSVTRDP 178 (289)
T ss_pred ---hcCCCEEEEEEecCCC
Confidence 2456799999998754
No 32
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.86 E-value=6e-20 Score=176.32 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=53.1
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 297 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e 297 (524)
++.|+||||.+.... ..++++|||||+||||+++|++++.+. .++++++|++|+.+++.+.+ ++++
T Consensus 82 ~v~i~gP~g~f~~~~-~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~~~~~~-~l~~ 147 (211)
T cd06185 82 ELEVSAPRNLFPLDE-AARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSREDAAFLD-ELAA 147 (211)
T ss_pred EEEEcCCccCCcCCC-CCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcchhHHH-HHhh
Confidence 588999999986543 457899999999999999999998653 24799999999999886544 3443
No 33
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.85 E-value=1.7e-20 Score=194.89 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=66.3
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|+||||.++... ..++++|||||+||||+++|+++++.+ + ..++++|+|++|+.+++.+.++ ++++.
T Consensus 193 ~v~i~gP~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~---~---~~~~v~l~~g~r~~~dl~~~~e-l~~~~-- 262 (340)
T PRK11872 193 EILFEAPLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQ---G---CSPPVHLYYGVRHAADLCELQR-LAAYA-- 262 (340)
T ss_pred EEEEEcCcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHc---C---CCCcEEEEEecCChHHhccHHH-HHHHH--
Confidence 588999999997643 447899999999999999999998764 1 2357999999999999865544 44432
Q ss_pred cccCCCceEEEEEEcCC
Q 009819 302 FFSDKLNLETFIYVTRE 318 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~ 318 (524)
....+++++.++++.
T Consensus 263 --~~~~~~~~~~~~s~~ 277 (340)
T PRK11872 263 --ERLPNFRYHPVVSKA 277 (340)
T ss_pred --HHCCCcEEEEEEeCC
Confidence 244678888888754
No 34
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.85 E-value=4.1e-20 Score=191.94 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=64.8
Q ss_pred EEEEeCcccCCCCCcc--ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819 222 TASVEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~--~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell 299 (524)
+|.|.||+|.+..+.. ..++++|||||+||||+++|+++++.+ + ..++|+|+|++|+.+++.+.++ ++++.
T Consensus 90 ~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~---~~~~v~l~~~~r~~~d~~~~~e-l~~l~ 162 (352)
T TIGR02160 90 TLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E---PRSTFTLVYGNRRTASVMFAEE-LADLK 162 (352)
T ss_pred EEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C---CCceEEEEEEeCCHHHHHHHHH-HHHHH
Confidence 5789999999865432 247899999999999999999998764 1 1468999999999999865544 44432
Q ss_pred CCcccCCCceEEEEEEcCCC
Q 009819 300 CPFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyVTr~~ 319 (524)
+ ....+++++.++++..
T Consensus 163 ~---~~~~~~~~~~~~s~~~ 179 (352)
T TIGR02160 163 D---KHPQRFHLAHVLSREP 179 (352)
T ss_pred H---hCcCcEEEEEEecCCC
Confidence 1 1122578877777643
No 35
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.85 E-value=5.4e-20 Score=180.08 Aligned_cols=87 Identities=24% Similarity=0.272 Sum_probs=65.3
Q ss_pred EEEEeCcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
++.|.||+|.+..... .+++++|||||+||||+++++++++... ..++++|+|++|+.+++.+ .++++++.+
T Consensus 90 ~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~~ 162 (241)
T cd06214 90 TLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE------PASRVTLVYGNRTEASVIF-REELADLKA 162 (241)
T ss_pred EEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhH-HHHHHHHHH
Confidence 5789999999876544 4789999999999999999999987641 1457999999999999854 445555421
Q ss_pred CcccCCCceEEEEEEcCC
Q 009819 301 PFFSDKLNLETFIYVTRE 318 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~ 318 (524)
....+++++.++|+.
T Consensus 163 ---~~~~~~~~~~~~~~~ 177 (241)
T cd06214 163 ---RYPDRLTVIHVLSRE 177 (241)
T ss_pred ---hCcCceEEEEEecCC
Confidence 122367777777653
No 36
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.85 E-value=8.1e-20 Score=181.38 Aligned_cols=67 Identities=25% Similarity=0.467 Sum_probs=53.6
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 297 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e 297 (524)
+|.|+||||..+......++++|||||+||||+++|++++... .++++|+|++|+.+++.+.+ ++++
T Consensus 81 ~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~~~-eL~~ 147 (246)
T cd06218 81 ELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDLFLVE-EFEA 147 (246)
T ss_pred EEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhhhhHH-HHHh
Confidence 6889999997544333568999999999999999999998763 25799999999999975544 4444
No 37
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.83 E-value=1.5e-19 Score=180.13 Aligned_cols=121 Identities=21% Similarity=0.380 Sum_probs=81.0
Q ss_pred EEEEeCcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
++.|+||||.++.... .++++||||||+||||+++|+++++.+. ...++++|+|++|+.+++.+ .+.++++.
T Consensus 80 ~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~-----~~~~~i~Li~~~r~~~~~~~-~~~L~~l~- 152 (253)
T cd06221 80 TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNR-----EDYGKVTLLYGARTPEDLLF-KEELKEWA- 152 (253)
T ss_pred EEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcc-----ccCCcEEEEEecCChHHcch-HHHHHHHH-
Confidence 5889999999654322 5689999999999999999999998641 12468999999999999854 55555543
Q ss_pred CcccCCCceEEEEEEcCCCCC-CCcccccccccccccCCCCCCCceeeeeCCCCch
Q 009819 301 PFFSDKLNLETFIYVTRETEP-PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV 355 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~~~-~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~ 355 (524)
.. .++++++++++..+. ....+.+.. .+......+ .....++||+..++
T Consensus 153 ---~~-~~~~~~~~~s~~~~~~~~~~g~v~~-~l~~~~~~~-~~~~vyicGp~~mv 202 (253)
T cd06221 153 ---KR-SDVEVILTVDRAEEGWTGNVGLVTD-LLPELTLDP-DNTVAIVCGPPIMM 202 (253)
T ss_pred ---hc-CCeEEEEEeCCCCCCccCCccccch-hHHhcCCCc-CCcEEEEECCHHHH
Confidence 23 578888888865431 111222221 122111122 34568999998743
No 38
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.83 E-value=7e-19 Score=174.74 Aligned_cols=65 Identities=22% Similarity=0.493 Sum_probs=52.6
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 294 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el 294 (524)
++.|+||||..+......++++|||||+||||++++++++..+ .++++|+|++|+.+++.+.+++
T Consensus 85 ~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~~~el 149 (250)
T PRK00054 85 ELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK--------GVEVTTVLGARTKDEVIFEEEF 149 (250)
T ss_pred EEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc--------CCcEEEEEEcCCHHHhhhHHHH
Confidence 6889999998543323567999999999999999999998753 3479999999999998654443
No 39
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.82 E-value=5.2e-19 Score=175.94 Aligned_cols=87 Identities=24% Similarity=0.230 Sum_probs=63.0
Q ss_pred EEEEeCcccCCCC-Ccc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819 222 TASVEGPYGHEVP-YHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPYG~~~~-~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell 299 (524)
+|.|.||+|+++. +.. ..++++||||||||||+++|++++... + ..++++|+|++|+.+++.+ .++++++.
T Consensus 87 ~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~---~---~~~~v~l~~g~r~~~d~~~-~~el~~l~ 159 (248)
T PRK10926 87 EVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL---E---RFKNLVLVHAARYAADLSY-LPLMQELE 159 (248)
T ss_pred EEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh---C---CCCcEEEEEeCCcHHHHHH-HHHHHHHH
Confidence 6889998855433 322 336899999999999999999998643 1 2457999999999999855 44445532
Q ss_pred CCcccCC-CceEEEEEEcCCC
Q 009819 300 CPFFSDK-LNLETFIYVTRET 319 (524)
Q Consensus 300 ~~~~~~~-~~l~I~IyVTr~~ 319 (524)
+ .. .+++++..+++++
T Consensus 160 ~----~~~~~~~v~~~~s~~~ 176 (248)
T PRK10926 160 Q----RYEGKLRIQTVVSRET 176 (248)
T ss_pred H----hCcCCEEEEEEECCCC
Confidence 1 22 4688888888743
No 40
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.82 E-value=2.8e-19 Score=173.57 Aligned_cols=125 Identities=21% Similarity=0.302 Sum_probs=84.2
Q ss_pred EEEEeCcccCCCCCcccc-ccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYHLMY-ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~-~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
++.|+||||.+....... +++||||||+||||+++++++++.+. ...++|+|+|++|+.+++ ++.++++++..
T Consensus 86 ~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-----~~~~~i~l~~~~r~~~~~-~~~~~l~~~~~ 159 (234)
T cd06183 86 TVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP-----EDKTKISLLYANRTEEDI-LLREELDELAK 159 (234)
T ss_pred EEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc-----CcCcEEEEEEecCCHHHh-hhHHHHHHHHH
Confidence 588999999986543333 78999999999999999999987641 124689999999999987 45555555421
Q ss_pred CcccCCCceEEEEEEcCCCC-CCCcccccccccccccCCC-CCCCceeeeeCCCCch
Q 009819 301 PFFSDKLNLETFIYVTRETE-PPLEEGELHKTMSSSIYPV-PSGCAMSVLVGTGNNV 355 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~-ps~~s~s~i~G~~s~~ 355 (524)
....++++++++|+.++ +....+.++.+++....+. +......++||+..++
T Consensus 160 ---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~ 213 (234)
T cd06183 160 ---KHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMI 213 (234)
T ss_pred ---hCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHH
Confidence 11357889888887543 2222333333333333322 2345678999998643
No 41
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.82 E-value=4.7e-19 Score=175.95 Aligned_cols=85 Identities=9% Similarity=0.072 Sum_probs=61.2
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc-hHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~-dl~wl~ell~ell~ 300 (524)
+|.|.||.|..+......+++||||||+|||||++|+++++.. + ..+++|+|++|+.+ ++.+ .++++++.
T Consensus 92 ~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~---~----~~~~~l~~g~r~~~~d~~~-~~el~~~~- 162 (245)
T cd06200 92 SVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARA---G----RHRNWLLFGERQAAHDFFC-REELEAWQ- 162 (245)
T ss_pred EEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c----CCCeEEEEecCCccccHhH-HHHHHHHH-
Confidence 6889998765444323457899999999999999999998754 1 24689999999984 7654 44555542
Q ss_pred CcccCCCceEEEEEEcCC
Q 009819 301 PFFSDKLNLETFIYVTRE 318 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~ 318 (524)
.....++++++++++
T Consensus 163 ---~~~~~~~~~~~~s~~ 177 (245)
T cd06200 163 ---AAGHLARLDLAFSRD 177 (245)
T ss_pred ---HCCCcceEEEEEccC
Confidence 234567777777764
No 42
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.82 E-value=6.4e-19 Score=187.40 Aligned_cols=87 Identities=15% Similarity=0.395 Sum_probs=66.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|+||+|.++.. ...++++|||||+||||+++|+++++.+.+ ..++++|+|++|+.+++.+.++ ++++.
T Consensus 258 ~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~-----~~~~v~L~~g~r~~~d~~~~~e-l~~l~-- 328 (409)
T PRK05464 258 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYVED-FDQLA-- 328 (409)
T ss_pred EEEEEccccCcEec-CCCceEEEEEeccChhHHHHHHHHHHhCCC-----CCceEEEEEecCCHHHhhHHHH-HHHHH--
Confidence 58899999999765 355789999999999999999998876421 2468999999999999865554 44432
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
....++++++.+++..
T Consensus 329 --~~~~~~~~~~~~s~~~ 344 (409)
T PRK05464 329 --AENPNFKWHVALSDPL 344 (409)
T ss_pred --HhCCCeEEEEEEcCCC
Confidence 2456788888777543
No 43
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.81 E-value=8e-19 Score=186.46 Aligned_cols=87 Identities=15% Similarity=0.342 Sum_probs=66.3
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.|+||||.++.. ...++++|||||+||||+++|+++++.+.+ ..++++|+|++|+.+++.+.+ +++++.
T Consensus 254 ~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~~-el~~l~-- 324 (405)
T TIGR01941 254 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQE-DFDQLE-- 324 (405)
T ss_pred EEEEEeccCCCeec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHHH-HHHHHH--
Confidence 58899999999764 345789999999999999999998775411 245799999999999986544 444432
Q ss_pred cccCCCceEEEEEEcCCC
Q 009819 302 FFSDKLNLETFIYVTRET 319 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~ 319 (524)
....++++++++++..
T Consensus 325 --~~~~~~~~~~~~s~~~ 340 (405)
T TIGR01941 325 --AENPNFVWHVALSDPQ 340 (405)
T ss_pred --HhCCCeEEEEEeCCCC
Confidence 2456788888877643
No 44
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.81 E-value=2.3e-18 Score=169.22 Aligned_cols=61 Identities=25% Similarity=0.578 Sum_probs=50.3
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 293 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e 293 (524)
++.|+||||..+.. .+++++|||||+||||+++|+++++.+ ++++|+|++|+.+++.+.++
T Consensus 73 ~v~i~gP~G~~f~~--~~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~~~~~e 133 (233)
T cd06220 73 KLGIRGPYGNGFEL--VGGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEELLFLDR 133 (233)
T ss_pred EEEEECcCCCCccC--CCCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHChhHHH
Confidence 57899999984332 268999999999999999999998652 47999999999999865444
No 45
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.81 E-value=2e-18 Score=174.59 Aligned_cols=134 Identities=26% Similarity=0.369 Sum_probs=109.4
Q ss_pred eeEEEeecCCC-CccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHHhcCCCCCCCCC
Q 009819 2 WNCGIGPIKTY-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSESDSQVG 78 (524)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~~~~~~~~~~~~ 78 (524)
|+..+.+.... ++|+||||+.|.++.-+...++-|||+|+|++. +.+.|.||+. |..+..|.|.++..
T Consensus 21 ~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~-~~~~isVk~~~~G~~S~~Lh~~lk~G-------- 91 (266)
T COG1018 21 FSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDED-SLYRISVKREDGGGGSNWLHDHLKVG-------- 91 (266)
T ss_pred EEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCC-ceEEEEEEEeCCCcccHHHHhcCCCC--------
Confidence 44555544433 379999999999987777889999999999874 5899999986 78888888766433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819 79 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP 158 (524)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (524)
T Consensus 92 -------------------------------------------------------------------------------- 91 (266)
T COG1018 92 -------------------------------------------------------------------------------- 91 (266)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccc
Q 009819 159 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM 238 (524)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~ 238 (524)
.+|.|.+|.|.|..+...
T Consensus 92 --------------------------------------------------------------d~l~v~~P~G~F~l~~~~ 109 (266)
T COG1018 92 --------------------------------------------------------------DTLEVSAPAGDFVLDDLP 109 (266)
T ss_pred --------------------------------------------------------------CEEEEecCCCCccCCCCC
Confidence 157789999999887655
Q ss_pred cccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819 239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 293 (524)
Q Consensus 239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e 293 (524)
.++++|||||||||||+||++++... .. .+|.|+|++|+.+++.|.++
T Consensus 110 ~~~~llla~G~GITP~lSml~~~~~~------~~-~~v~l~h~~R~~~~~af~de 157 (266)
T COG1018 110 ERKLLLLAGGIGITPFLSMLRTLLDR------GP-ADVVLVHAARTPADLAFRDE 157 (266)
T ss_pred CCcEEEEeccccHhHHHHHHHHHHHh------CC-CCEEEEEecCChhhcchhhH
Confidence 56899999999999999999998875 12 67999999999999988765
No 46
>PRK05713 hypothetical protein; Provisional
Probab=99.81 E-value=5.9e-19 Score=181.09 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=59.7
Q ss_pred EEEEeCcccCCCC-Ccc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819 222 TASVEGPYGHEVP-YHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPYG~~~~-~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell 299 (524)
+|.|.||+|.++. ... ..+++||||||+||||++||+++++++ + ..++++|+|++|+.+++.+ .++++++.
T Consensus 173 ~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~---~---~~~~v~l~~g~r~~~d~~~-~~el~~l~ 245 (312)
T PRK05713 173 LLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQ---G---HQGPIRLLHLARDSAGHYL-AEPLAALA 245 (312)
T ss_pred EEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhc---C---CCCcEEEEEEcCchHHhhh-HHHHHHHH
Confidence 5779999986432 222 347899999999999999999998764 1 2457999999999999855 44555542
Q ss_pred CCcccCCCceEEEEEE
Q 009819 300 CPFFSDKLNLETFIYV 315 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyV 315 (524)
....++++++.+
T Consensus 246 ----~~~~~~~~~~~~ 257 (312)
T PRK05713 246 ----GRHPQLSVELVT 257 (312)
T ss_pred ----HHCCCcEEEEEE
Confidence 234456665444
No 47
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.81 E-value=1.8e-18 Score=177.56 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=66.3
Q ss_pred EEEEeCcccCCCCCc--cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819 222 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~--~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell 299 (524)
+|.|+||+|.++... ...+++||||||+|||||+||+++++...... .....+++|+|++|+.+++.+ .++++++.
T Consensus 137 ~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~-~~~~~~v~L~~g~R~~~d~~~-~deL~~l~ 214 (307)
T PLN03116 137 KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPA-FKFGGLAWLFLGVANSDSLLY-DDEFERYL 214 (307)
T ss_pred EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhcccc-ccCCCcEEEEEecCCcccchH-HHHHHHHH
Confidence 689999999987532 23468999999999999999999987642100 001357999999999999855 44555542
Q ss_pred CCcccCCC-ceEEEEEEcCCC
Q 009819 300 CPFFSDKL-NLETFIYVTRET 319 (524)
Q Consensus 300 ~~~~~~~~-~l~I~IyVTr~~ 319 (524)
+ ... +++++..+++..
T Consensus 215 ~----~~~~~~~~~~~~sr~~ 231 (307)
T PLN03116 215 K----DYPDNFRYDYALSREQ 231 (307)
T ss_pred H----hCCCcEEEEEEEccCC
Confidence 2 333 688888888653
No 48
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.81 E-value=3e-18 Score=173.90 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=66.5
Q ss_pred EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
+|.|.||+|.++... ...++++|||||+|||||++|+++++.+.... ....++++|+|++|+.+++.+ .++++++.+
T Consensus 117 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~-~~~~~~v~L~~g~r~~~d~~~-~~el~~l~~ 194 (286)
T cd06208 117 DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHAD-YKFTGLAWLFFGVPNSDSLLY-DDELEKYPK 194 (286)
T ss_pred EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-cCCCCCEEEEEEecCccchhH-HHHHHHHHH
Confidence 688999999986543 23468999999999999999999987642100 012457999999999999754 444555432
Q ss_pred CcccCC-CceEEEEEEcCCC
Q 009819 301 PFFSDK-LNLETFIYVTRET 319 (524)
Q Consensus 301 ~~~~~~-~~l~I~IyVTr~~ 319 (524)
+. .++++++.+++++
T Consensus 195 ----~~~~~~~~~~~~sr~~ 210 (286)
T cd06208 195 ----QYPDNFRIDYAFSREQ 210 (286)
T ss_pred ----hCCCcEEEEEEEcCCC
Confidence 22 3688888888654
No 49
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.79 E-value=1.6e-18 Score=167.44 Aligned_cols=112 Identities=25% Similarity=0.362 Sum_probs=75.9
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
++.++||||.+.. .++++|||||+||||+++|+++++.. + ..++++|+|++|+.+++.+ .++++++
T Consensus 86 ~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~-~~el~~l--- 151 (218)
T cd06196 86 TLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAK---G---KLEGNTLIFANKTEKDIIL-KDELEKM--- 151 (218)
T ss_pred EEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhC---C---CCceEEEEEecCCHHHHhh-HHHHHHh---
Confidence 5889999999743 25799999999999999999998864 1 2467999999999999854 4444443
Q ss_pred cccCCCceEEEEEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 354 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~ 354 (524)
.+++++.+++++.......+.++.+++....+. .....++||+..+
T Consensus 152 -----~~~~~~~~~s~~~~~~~~~g~~~~~~l~~~~~~--~~~~vyiCGp~~m 197 (218)
T cd06196 152 -----LGLKFINVVTDEKDPGYAHGRIDKAFLKQHVTD--FNQHFYVCGPPPM 197 (218)
T ss_pred -----hcceEEEEEcCCCCCCeeeeEECHHHHHHhcCC--CCCEEEEECCHHH
Confidence 135677777875443222344443333333221 1245788999763
No 50
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.78 E-value=1e-17 Score=178.80 Aligned_cols=87 Identities=15% Similarity=0.289 Sum_probs=62.6
Q ss_pred EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
+|.|.||||.++... ...+++||||||||||||++|++++......+ ...+++|+|++|+.+++.+++++ +++.+
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~---~~~~v~L~~G~Rt~~dl~y~~eL-~~l~~ 324 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG---EGGKLMLFFGARTKEELPYFGPL-QKLPK 324 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC---CCCCEEEEEecCccccchHHHHH-HHHHh
Confidence 688999999966432 22468999999999999999999987642211 24689999999999999766654 44321
Q ss_pred CcccCCCceEEEEEEcCC
Q 009819 301 PFFSDKLNLETFIYVTRE 318 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~ 318 (524)
..+++++.+++.
T Consensus 325 ------~~~~~~~~~sr~ 336 (411)
T TIGR03224 325 ------DFIDINFAFSRT 336 (411)
T ss_pred ------cCceEEEEeccC
Confidence 124555555553
No 51
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.78 E-value=4.5e-18 Score=168.92 Aligned_cols=67 Identities=21% Similarity=0.456 Sum_probs=54.0
Q ss_pred EE-EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhc
Q 009819 222 TA-SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 298 (524)
Q Consensus 222 ~V-~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~el 298 (524)
++ .|+||||.++.. ..+++++|||||+||||+++|++++++. .++++|+|++|+.+++.+ .++++++
T Consensus 80 ~v~~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~--------~~~v~l~~~~r~~~~~~~-~~el~~l 147 (248)
T cd06219 80 KIHDVVGPLGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEA--------GNRVITIIGARTKDLVIL-EDEFRAV 147 (248)
T ss_pred EeeeeecCCCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHc--------CCeEEEEEEcCCHHHhhh-HHHHHhh
Confidence 46 699999998654 3467899999999999999999998753 257999999999999855 4444443
No 52
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.78 E-value=1.4e-17 Score=175.42 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=66.6
Q ss_pred EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
.|.|.||+|.++... ...+++||||||+|||||+++|++++....... ....+++|+|++|+.+++.+ .++++++.+
T Consensus 197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~-~~~~~v~Lf~G~R~~~dlly-~dELe~l~~ 274 (367)
T PLN03115 197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPTSSSLLY-KEEFEKMKE 274 (367)
T ss_pred EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccc-cCCCcEEEEEccCCHHHhhH-HHHHHHHHH
Confidence 688999999986533 234689999999999999999998765421110 11357999999999998854 444555422
Q ss_pred CcccCC-CceEEEEEEcCCCC
Q 009819 301 PFFSDK-LNLETFIYVTRETE 320 (524)
Q Consensus 301 ~~~~~~-~~l~I~IyVTr~~~ 320 (524)
.. .+++++..++++++
T Consensus 275 ----~~p~~f~v~~a~SR~~~ 291 (367)
T PLN03115 275 ----KAPENFRLDFAVSREQT 291 (367)
T ss_pred ----hCCCCEEEEEEEcCCCc
Confidence 33 47999999997543
No 53
>PRK05802 hypothetical protein; Provisional
Probab=99.77 E-value=1.6e-17 Score=171.99 Aligned_cols=67 Identities=12% Similarity=0.247 Sum_probs=51.8
Q ss_pred EEEEeCcccCC--CCC---ccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819 222 TASVEGPYGHE--VPY---HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK 296 (524)
Q Consensus 222 ~V~VdGPYG~~--~~~---~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ 296 (524)
++.|+||||+. ... ....++++|||||+||||+++++++++++ ..+|+|+|++|+.+++. +.++++
T Consensus 150 ~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~--------~~~v~li~g~r~~~~~~-~~~el~ 220 (320)
T PRK05802 150 EILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSN--------GNKIIVIIDKGPFKNNF-IKEYLE 220 (320)
T ss_pred EEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHc--------CCcEEEEEeCCCHHHHH-HHHHHH
Confidence 58899999753 221 12346899999999999999999999764 23799999999999984 455555
Q ss_pred h
Q 009819 297 E 297 (524)
Q Consensus 297 e 297 (524)
+
T Consensus 221 ~ 221 (320)
T PRK05802 221 L 221 (320)
T ss_pred H
Confidence 4
No 54
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.77 E-value=8.6e-18 Score=170.34 Aligned_cols=112 Identities=21% Similarity=0.322 Sum_probs=72.7
Q ss_pred EE-EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TA-SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V-~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
++ .|.||||.++.. ..+++++|||||+||||++++++++.++ ..+++|+|++|+.+++.+.+++ +++.
T Consensus 81 ~v~~i~GP~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~d~~~~~el-~~~~- 149 (281)
T PRK06222 81 SILDVVGPLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEA--------GNKVITIIGARNKDLLILEDEM-KAVS- 149 (281)
T ss_pred EEeeEEcCCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHC--------CCeEEEEEecCCHHHhhcHHHH-HhhC-
Confidence 57 699999998754 3457899999999999999999998653 2479999999999998655544 3321
Q ss_pred CcccCCCceEEEEEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCCch
Q 009819 301 PFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV 355 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~ 355 (524)
. ++ +++.++.+....+.++. ++....+...+....++||+..++
T Consensus 150 ----~----~~--~v~~~d~~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~ 193 (281)
T PRK06222 150 ----D----EL--YVTTDDGSYGRKGFVTD-VLKELLESGKKVDRVVAIGPVIMM 193 (281)
T ss_pred ----C----eE--EEEcCCCCcCcccchHH-HHHHHhhcCCCCcEEEEECCHHHH
Confidence 1 11 23333332223333322 233333333323467999998643
No 55
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.76 E-value=8.3e-18 Score=165.89 Aligned_cols=67 Identities=28% Similarity=0.464 Sum_probs=54.5
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 297 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e 297 (524)
++.|+||||.++......++++|||||+||||+++|++++..+ .++++|+|++|+.+++.+ .+++++
T Consensus 80 ~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~-~~el~~ 146 (243)
T cd06192 80 KLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFL-DEYFEL 146 (243)
T ss_pred EEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHH-HHHHHh
Confidence 5889999998866543468999999999999999999998753 358999999999999754 444443
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.76 E-value=2.1e-17 Score=166.60 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=67.9
Q ss_pred EEEEeCccc-CCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819 222 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPYG-~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell 299 (524)
.|.|.||+| .|..+....+++|||||||||||+++|+++++...... ....+++|+|++|+. +++.+ .+.++++.
T Consensus 97 ~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~--~~~~~v~l~~g~r~~~~d~~~-~del~~~~ 173 (267)
T cd06182 97 KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG--KARGPAWLFFGCRNFASDYLY-REELQEAL 173 (267)
T ss_pred EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc--ccCCCEEEEEeCCCCcccccH-HHHHHHHH
Confidence 688999999 77654433578999999999999999999988632111 124579999999999 88855 44455542
Q ss_pred CCcccCCCceEEEEEEcCCCC
Q 009819 300 CPFFSDKLNLETFIYVTRETE 320 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyVTr~~~ 320 (524)
....+++++..+++...
T Consensus 174 ----~~~~~~~~~~~~S~~~~ 190 (267)
T cd06182 174 ----KDGALTRLDVAFSREQA 190 (267)
T ss_pred ----hCCCcceEEEEEccCCC
Confidence 24457889888887543
No 57
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.75 E-value=4.1e-17 Score=163.96 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=74.2
Q ss_pred EEEEeCcccC-CCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~-~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
+|.|+||||. +..+....++++|||||+||||+++|+++++.+. ...++++|+|++|+.+++.+. ++++++.+
T Consensus 83 ~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~-----~~~~~v~L~~g~r~~~~l~~~-~el~~~~~ 156 (263)
T PRK08221 83 KLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP-----QEIKSLDLILGFKNPDDILFK-EDLKRWRE 156 (263)
T ss_pred EEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHHhhHH-HHHHHHhh
Confidence 5889999998 4433334579999999999999999999987541 124589999999999998554 44555321
Q ss_pred CcccCCCceEEEEEEcCCCC-CCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819 301 PFFSDKLNLETFIYVTRETE-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 354 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~ 354 (524)
++++++.+++... +....+.+.+.+.....+.+ +....++||+..+
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~-~~~~vylCGp~~m 203 (263)
T PRK08221 157 -------KINLILTLDEGEEGYRGNVGLVTKYIPELTLKDI-DNMQVIVVGPPIM 203 (263)
T ss_pred -------cCcEEEEecCCCCCCccCccccChhhHhccCCCc-CCeEEEEECCHHH
Confidence 1234444554332 12223333322111111111 2356899999864
No 58
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.75 E-value=2.5e-17 Score=170.83 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=84.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.|.||+|.+.......++++||||||||||+++|+++++++..........+|+|+|++|+.+++.+ .++++++.+
T Consensus 142 ~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~-~~eL~~La~- 219 (325)
T PTZ00274 142 KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILL-KGLFDDLAR- 219 (325)
T ss_pred EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhH-HHHHHHHHH-
Confidence 588899988775443344789999999999999999999886521100012458999999999999854 445555422
Q ss_pred cccCCC-ceEEEEEEcCCCC---CCCcccccccccccccCCCCC-CCceeeeeCCCCc
Q 009819 302 FFSDKL-NLETFIYVTRETE---PPLEEGELHKTMSSSIYPVPS-GCAMSVLVGTGNN 354 (524)
Q Consensus 302 ~~~~~~-~l~I~IyVTr~~~---~~~~~~~i~~~~~~~~~P~ps-~~s~s~i~G~~s~ 354 (524)
... +++++..+++... +....+.+++.++....+.+. .....++||+..+
T Consensus 220 ---~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~M 274 (325)
T PTZ00274 220 ---RYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQL 274 (325)
T ss_pred ---hCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHH
Confidence 233 6888888886432 223345555554444444332 2346899999864
No 59
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.75 E-value=2.6e-17 Score=168.61 Aligned_cols=122 Identities=22% Similarity=0.401 Sum_probs=83.3
Q ss_pred EEEEeCcccCCCCCc---------------cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc
Q 009819 222 TASVEGPYGHEVPYH---------------LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN 286 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~---------------~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~ 286 (524)
+|.|+||+|.+.... ...++++|||||+||||+++|+++++.+. ...++++|+|++|+.+
T Consensus 134 ~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~-----~~~~~i~liyg~r~~~ 208 (300)
T PTZ00319 134 KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNK-----EDRTKVFLVYANQTED 208 (300)
T ss_pred EEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCC-----CCCceEEEEEecCCHH
Confidence 588999999884321 12357999999999999999999987641 1245899999999999
Q ss_pred hHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCC--CCcccccccccccccCCCCC------CCceeeeeCCCCc
Q 009819 287 ELSLLSNFYKESICPFFSDKLNLETFIYVTRETEP--PLEEGELHKTMSSSIYPVPS------GCAMSVLVGTGNN 354 (524)
Q Consensus 287 dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~--~~~~~~i~~~~~~~~~P~ps------~~s~s~i~G~~s~ 354 (524)
++.+.+++. ++ + ...+++++..++++... ....+.+++.++....+... +....++||+..+
T Consensus 209 dl~~~~eL~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp~~m 278 (300)
T PTZ00319 209 DILLRKELD-EA-A----KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGPPPM 278 (300)
T ss_pred HhhHHHHHH-HH-h----hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECCHHH
Confidence 997766553 32 1 34578888888874322 22334555444444434222 2457899999863
No 60
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.73 E-value=1.3e-16 Score=162.50 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=56.9
Q ss_pred EEEe-CcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc-hHHHHHHHHHhccC
Q 009819 223 ASVE-GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC 300 (524)
Q Consensus 223 V~Vd-GPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~-dl~wl~ell~ell~ 300 (524)
|.+. +|+|.|... ...++++|||||||||||++||++... .++++|+|++|+.+ ++. ++++++++.+
T Consensus 139 v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~---------~~~v~L~~g~r~~~~d~~-~~~eL~~l~~ 207 (289)
T cd06201 139 IKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA---------RRPMHLYWGGRDPASDFL-YEDELDQYLA 207 (289)
T ss_pred EEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc---------cCCEEEEEEecCcccchH-HHHHHHHHHH
Confidence 4455 578887654 345789999999999999999987521 35799999999985 664 4555555432
Q ss_pred CcccCCCceEEEEEEcCC
Q 009819 301 PFFSDKLNLETFIYVTRE 318 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~ 318 (524)
...+++++..+++.
T Consensus 208 ----~~~~~~~~~~~s~~ 221 (289)
T cd06201 208 ----DGRLTQLHTAFSRT 221 (289)
T ss_pred ----cCCCceEEEEECCC
Confidence 34456676666653
No 61
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.73 E-value=7.9e-17 Score=161.73 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=73.3
Q ss_pred EEEEeCcccCCC-CCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEV-PYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~-~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~ 300 (524)
+|.|+||||..+ .+....++++|||||+||||+++|+++++++. ...++|+|+|++|+.+++.+.+ +++++..
T Consensus 81 ~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~-----~~~~~v~L~~~~r~~~~~~~~~-eL~~l~~ 154 (261)
T TIGR02911 81 NLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP-----KEIKSLNLILGFKTPDDILFKE-DIAEWKG 154 (261)
T ss_pred EEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHHhhHHH-HHHHHHh
Confidence 588999999943 33334578999999999999999999987641 1235899999999999985544 4445321
Q ss_pred CcccCCCceEEEEEEcCCC-CCCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819 301 PFFSDKLNLETFIYVTRET-EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 354 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~-~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~ 354 (524)
. .++++.+.+.. .+....+.+.... ......+.+....++||+..+
T Consensus 155 -----~--~~~~~~~~~~~~~~~~~~g~v~~~l-~~~~~~~~~~~~v~lCGp~~m 201 (261)
T TIGR02911 155 -----N--INLTLTLDEAEEDYKGNIGLVTKYI-PELTLKDIEEVQAIVVGPPIM 201 (261)
T ss_pred -----c--CcEEEEEcCCCCCCcCCeeccCHhH-HhccCCCccceEEEEECCHHH
Confidence 1 23344444322 2222333333221 111111112346899999863
No 62
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.69 E-value=2.5e-16 Score=160.25 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=104.7
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
+|.++||.|.+..+...++++.|||||+||||+++++++++... .+..+|+|+|++++.+|+ +++++++++..
T Consensus 139 ~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~-----~d~tki~lly~N~te~DI-Llr~eL~~la~- 211 (286)
T KOG0534|consen 139 TVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP-----EDTTKISLLYANKTEDDI-LLREELEELAS- 211 (286)
T ss_pred EEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC-----CCCcEEEEEEecCCcccc-chHHHHHHHHh-
Confidence 69999999999877666899999999999999999999998762 236789999999999998 56666666533
Q ss_pred cccCCC-ceEEEEEEcCCC-CCCCcccccccccccccCCCCCC-CceeeeeCCCCc
Q 009819 302 FFSDKL-NLETFIYVTRET-EPPLEEGELHKTMSSSIYPVPSG-CAMSVLVGTGNN 354 (524)
Q Consensus 302 ~~~~~~-~l~I~IyVTr~~-~~~~~~~~i~~~~~~~~~P~ps~-~s~s~i~G~~s~ 354 (524)
++. +|+++.++++.. .++...+.++++|+....|.+++ .....+||+..+
T Consensus 212 ---~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m 264 (286)
T KOG0534|consen 212 ---KYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPM 264 (286)
T ss_pred ---hCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHH
Confidence 444 899999999887 56778889999999999999888 688999999873
No 63
>PLN02252 nitrate reductase [NADPH]
Probab=99.69 E-value=2.7e-16 Score=181.26 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=86.9
Q ss_pred EEEEeCcccCCCCC----------ccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHH
Q 009819 222 TASVEGPYGHEVPY----------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL 291 (524)
Q Consensus 222 ~V~VdGPYG~~~~~----------~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl 291 (524)
+|.|.||+|.+... ....++++|||||+||||+++||++++... ...++|+|+|++|+.+++.+
T Consensus 731 ~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~-----~d~t~i~Liyg~Rt~~Dil~- 804 (888)
T PLN02252 731 TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP-----EDKTEMSLVYANRTEDDILL- 804 (888)
T ss_pred EEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhcc-----CCCCcEEEEEEECCHHHhhH-
Confidence 68899999986321 112478999999999999999999998641 12468999999999999855
Q ss_pred HHHHHhccCCcccCC-CceEEEEEEcCCC--CCCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819 292 SNFYKESICPFFSDK-LNLETFIYVTRET--EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 354 (524)
Q Consensus 292 ~ell~ell~~~~~~~-~~l~I~IyVTr~~--~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~ 354 (524)
.++++++.+ +. .+++++..+|+.. .+....+.++.+++....+.+.+....++||+..+
T Consensus 805 ~eEL~~la~----~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vyiCGPp~M 866 (888)
T PLN02252 805 REELDRWAA----EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLALMCGPPPM 866 (888)
T ss_pred HHHHHHHHH----hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEEEeCCHHH
Confidence 445555432 23 5799988888753 33334555655555555544445677899999864
No 64
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.69 E-value=7.9e-16 Score=154.13 Aligned_cols=113 Identities=19% Similarity=0.301 Sum_probs=79.5
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~ 301 (524)
.+.|+||||+++......+.+++||||+|++|++++++++.++. ...+|+++|++|+.+++.+.+++ +++..
T Consensus 90 ~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~------~~~~V~~~~G~~~~~dl~~~~el-~~~~~- 161 (252)
T COG0543 90 KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG------DANKVTLLYGARTAKDLLLLDEL-EELAE- 161 (252)
T ss_pred EEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC------CCceEEEEEeccChhhcccHHHH-HHhhc-
Confidence 48999999999887545556999999999999999999998751 24689999999999999655544 44321
Q ss_pred cccCCCceEEEEEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCC
Q 009819 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGN 353 (524)
Q Consensus 302 ~~~~~~~l~I~IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s 353 (524)
+ ++++.++ +.+....+.++.+.+..+... +.....+||+.-
T Consensus 162 ---~----~~~~~~~--~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~ 202 (252)
T COG0543 162 ---K----EVHPVTD--DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPA 202 (252)
T ss_pred ---C----cEEEEEC--CCCCccCcceeHHHHhhhccc--cCCEEEEECCHH
Confidence 1 4444443 555555555544444333322 446788999975
No 65
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.63 E-value=4e-15 Score=169.48 Aligned_cols=64 Identities=20% Similarity=0.440 Sum_probs=53.4
Q ss_pred EE-EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819 222 TA-SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 294 (524)
Q Consensus 222 ~V-~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el 294 (524)
.+ .|.||||.++... ..++++|||||+||||+++++++++++ ..+++++|++|+.+++.+.+++
T Consensus 81 ~v~~v~GP~G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~~l~~~~el 145 (752)
T PRK12778 81 YITDVVGPLGNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKAA--------GNRVITILGGRSKELIILEDEM 145 (752)
T ss_pred EeCeEeCCCCCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHHC--------CCeEEEEeccCCHHHhhhHHHH
Confidence 57 6999999997643 357899999999999999999998764 2479999999999998665544
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.63 E-value=1e-14 Score=169.73 Aligned_cols=64 Identities=20% Similarity=0.413 Sum_probs=51.3
Q ss_pred EE-EEeCcccCCCCCcc--ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819 222 TA-SVEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 293 (524)
Q Consensus 222 ~V-~VdGPYG~~~~~~~--~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e 293 (524)
.+ .|.||+|.++.... ..++++|||||+||||+++|+++++++ ..+|+|+|++|+.+++.+.++
T Consensus 730 ~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~--------g~~V~li~G~Rs~edl~~~de 796 (944)
T PRK12779 730 AFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRL--------GNHVTLISGFRAKEFLFWTGD 796 (944)
T ss_pred EEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHC--------CCCEEEEEEeCCHHHhhhHHH
Confidence 57 49999999864321 236899999999999999999988764 247999999999988866543
No 67
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.61 E-value=1.6e-14 Score=169.11 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=50.1
Q ss_pred EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819 224 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 293 (524)
Q Consensus 224 ~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e 293 (524)
.+.||||.++... .++++||||||+||||+++|++++.+. ..+++++|++|+.+++.+.++
T Consensus 85 ~v~GPlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~--------g~~v~li~g~R~~~~l~~~de 145 (1006)
T PRK12775 85 DFVGPLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEA--------GARTTGIIGFRNKDLVFWEDK 145 (1006)
T ss_pred eeecCCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhC--------CCcEEEEEeCCChHHcccHHH
Confidence 6999999886542 457899999999999999999988654 246999999999988755444
No 68
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.60 E-value=7e-17 Score=141.36 Aligned_cols=56 Identities=30% Similarity=0.701 Sum_probs=0.0
Q ss_pred CccCCCcEEEEEeCCCC--CccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcC
Q 009819 13 LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK 70 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~s--~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~ 70 (524)
++|+||||+||+++.++ .+|||||||+|+|+ ++.++|+||..|+||++|++.+...
T Consensus 28 ~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~~~~~~ 85 (105)
T PF08022_consen 28 FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYEHLSES 85 (105)
T ss_dssp ------------------------------------------------------------
T ss_pred CCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHHHHhhh
Confidence 99999999999999999 45999999999987 4899999999999999999988765
No 69
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.58 E-value=7.1e-14 Score=137.76 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=48.3
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchH
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL 288 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl 288 (524)
+|.|.||+|.++... ..+++||||||+||||+++|++++.. ..+++++|++|+.+++
T Consensus 104 ~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~---------~~~~~~~~~~~~~~d~ 160 (235)
T cd06193 104 TLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA---------DARGTALIEVPDAADE 160 (235)
T ss_pred EEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC---------CCeEEEEEEECCHHHc
Confidence 699999999997643 45789999999999999999997743 1479999999998665
No 70
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.54 E-value=7.9e-14 Score=165.70 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=83.8
Q ss_pred EEEEeCcccCC----------CCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHH
Q 009819 222 TASVEGPYGHE----------VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL 291 (524)
Q Consensus 222 ~V~VdGPYG~~----------~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl 291 (524)
+|.|.||+|.+ .......++++|||||+||||+++||++++++.. ....++|+|+|++|+.+++.+.
T Consensus 1004 ~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~---~~~~~~i~Llyg~r~~~dl~~~ 1080 (1167)
T PTZ00306 1004 SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY---VDSIESIRLIYAAEDVSELTYR 1080 (1167)
T ss_pred EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc---cCCCceEEEEEEeCCHHHhhHH
Confidence 57777887732 1122234789999999999999999999886410 0124689999999999999654
Q ss_pred HHHHHhccCCcccCC-CceEEEEEEcCCCC-CCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819 292 SNFYKESICPFFSDK-LNLETFIYVTRETE-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 354 (524)
Q Consensus 292 ~ell~ell~~~~~~~-~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~ 354 (524)
+ +++++.+ +. .+|++++.+++..+ +....+.+...++.++.+.+......++||+..+
T Consensus 1081 ~-eL~~l~~----~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306 1081 E-LLESYRK----ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVM 1140 (1167)
T ss_pred H-HHHHHHH----HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHH
Confidence 4 4455421 23 36999988886432 2233455555555566554545567899999763
No 71
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.53 E-value=2.3e-13 Score=143.78 Aligned_cols=91 Identities=16% Similarity=0.132 Sum_probs=65.5
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell~ 300 (524)
+|.|.||+|.|.......+++||||||+|||||++++++.....+.+ ....++.|+|++|+. +++ .+.++++++.+
T Consensus 213 ~v~v~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~--~~~~~~~L~~G~R~~~~d~-~y~~el~~~~~ 289 (382)
T cd06207 213 RVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG--PEIGPVLLYFGCRHEDKDY-LYKEELEEYEK 289 (382)
T ss_pred EEEEEEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC--ccCCCEEEEECCCCCCccc-cHHHHHHHHHh
Confidence 57888999988654333578999999999999999999876532211 125689999999998 676 45555555432
Q ss_pred CcccCCCceEEEEEEcCCC
Q 009819 301 PFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~ 319 (524)
....+++++..++++
T Consensus 290 ----~~~~~~~~~a~Srd~ 304 (382)
T cd06207 290 ----SGVLTTLGTAFSRDQ 304 (382)
T ss_pred ----CCCCceEEEEecCCC
Confidence 344577878777643
No 72
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.52 E-value=3.4e-13 Score=142.60 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=66.0
Q ss_pred eEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 299 (524)
Q Consensus 221 l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell 299 (524)
+.+.+.+|+|.|.......++++|||||+|||||++++++.......+ ....++.|+|++|+. +++. +.++++++.
T Consensus 212 v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~v~L~~G~R~~~~d~l-y~~el~~~~ 288 (384)
T cd06206 212 IHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG--RKLAPALLFFGCRHPDHDDL-YRDELEEWE 288 (384)
T ss_pred EEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC--CCcCCEEEEEeCCCCCcccc-hHHHHHHHH
Confidence 567788999998765444578999999999999999999876542211 123579999999999 6764 455555542
Q ss_pred CCcccCCCceEEEEEEcCCC
Q 009819 300 CPFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyVTr~~ 319 (524)
+..++++++.+++++
T Consensus 289 -----~~~~~~l~~a~Sr~~ 303 (384)
T cd06206 289 -----AAGVVSVRRAYSRPP 303 (384)
T ss_pred -----HCCCeEEEEEecccC
Confidence 234678888887643
No 73
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.50 E-value=2.5e-13 Score=151.45 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=57.2
Q ss_pred EEEEeCcc-cCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccC-CchHHHHHHHHHhcc
Q 009819 222 TASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPY-G~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs-~~dl~wl~ell~ell 299 (524)
+|.|.+|. |.|.......++++|||||+|||||++++++...+ + ...++.|+|++|+ .+|+. +.++++.+.
T Consensus 432 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~---~---~~g~~~LffG~R~~~~D~l-y~~El~~~~ 504 (597)
T TIGR01931 432 TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAED---G---AKGKNWLFFGNPHFTTDFL-YQVEWQNYL 504 (597)
T ss_pred EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHc---c---CCCCEEEEECCCCCCcchh-HHHHHHHHH
Confidence 46666654 45654433446899999999999999999987654 1 1357999999999 66764 445555433
Q ss_pred CCcccCCCceEEEEEEcC
Q 009819 300 CPFFSDKLNLETFIYVTR 317 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyVTr 317 (524)
+ .....++++..+|
T Consensus 505 ~----~~~l~~l~~afSR 518 (597)
T TIGR01931 505 K----KGVLTKMDLAFSR 518 (597)
T ss_pred H----cCCCceeEEEEec
Confidence 2 2233456566665
No 74
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.44 E-value=5.5e-12 Score=134.23 Aligned_cols=94 Identities=11% Similarity=0.152 Sum_probs=63.6
Q ss_pred EEEEeC-cccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhc
Q 009819 222 TASVEG-PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES 298 (524)
Q Consensus 222 ~V~VdG-PYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~el 298 (524)
+|.+.| |.|.|..... ...+++|||||+|||||++++++.....+........++.|+|++|+. +|+. +.++++++
T Consensus 222 ~v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~-y~~El~~~ 300 (398)
T cd06203 222 KVPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYL-FRDELEEF 300 (398)
T ss_pred EEEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchh-HHHHHHHH
Confidence 466777 6777765433 347899999999999999999987653211101124679999999999 5764 45555554
Q ss_pred cCCcccCCCceEEEEEEcCCCC
Q 009819 299 ICPFFSDKLNLETFIYVTRETE 320 (524)
Q Consensus 299 l~~~~~~~~~l~I~IyVTr~~~ 320 (524)
.+ ....+++++.++|++.
T Consensus 301 ~~----~~~~~~~~~a~SRd~~ 318 (398)
T cd06203 301 LE----EGILTRLIVAFSRDEN 318 (398)
T ss_pred HH----cCCCceEEEEECCCCC
Confidence 32 3445667777887543
No 75
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.39 E-value=2e-12 Score=135.80 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=62.7
Q ss_pred EEEEeCcc-cCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819 222 TASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPY-G~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell 299 (524)
+|.+.+|. |.|........+++|||||+|||||+|++++.+... ...++.|+|++|+. +|+. +.++++++.
T Consensus 195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~D~~-y~~el~~~~ 267 (360)
T cd06199 195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG------AKGKNWLFFGERHFATDFL-YQDELQQWL 267 (360)
T ss_pred EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCcEEEEEcCCCCccchh-HHHHHHHHH
Confidence 46677644 566544334578999999999999999999876531 13579999999997 5764 455555543
Q ss_pred CCcccCCCceEEEEEEcCCCC
Q 009819 300 CPFFSDKLNLETFIYVTRETE 320 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyVTr~~~ 320 (524)
.....++++..++|++.
T Consensus 268 ----~~~~~~~~~~a~Sr~~~ 284 (360)
T cd06199 268 ----KDGVLTRLDTAFSRDQA 284 (360)
T ss_pred ----HcCCCeEEEEEEccCCC
Confidence 23456788888888653
No 76
>PRK06214 sulfite reductase; Provisional
Probab=99.32 E-value=1.6e-11 Score=135.12 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=61.9
Q ss_pred eeEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhc
Q 009819 220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES 298 (524)
Q Consensus 220 ~l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~el 298 (524)
.+.+++.+++| |........++||||+|+|||||+++|++.+... ...+++|+|++|+. +++ .+.++++++
T Consensus 365 ~V~v~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~------~~g~~~LffG~R~~~~D~-ly~dEL~~l 436 (530)
T PRK06214 365 RVRVYVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK------APGRNWLFFGHQRSATDF-FYEDELNGL 436 (530)
T ss_pred EEEEEecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc------CCCCeEEEEEecCChhhh-HHHHHHHHH
Confidence 35677778887 6544334468999999999999999999866531 13578999999764 465 455566654
Q ss_pred cCCcccCCCceEEEEEEcCCCC
Q 009819 299 ICPFFSDKLNLETFIYVTRETE 320 (524)
Q Consensus 299 l~~~~~~~~~l~I~IyVTr~~~ 320 (524)
.+ .....++++..+|++.
T Consensus 437 ~~----~g~l~~l~~afSRd~~ 454 (530)
T PRK06214 437 KA----AGVLTRLSLAWSRDGE 454 (530)
T ss_pred HH----hCCceEEEEEEecCCC
Confidence 32 3345667778887653
No 77
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.23 E-value=2.5e-10 Score=121.95 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=59.0
Q ss_pred EEEeCcc-cCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhh--cCCCCCCceEEEEEeccCC-chHHHHHHHHHhc
Q 009819 223 ASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRIN--EGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES 298 (524)
Q Consensus 223 V~VdGPY-G~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~--~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~el 298 (524)
|.+.++. |.|........++||||||+|||||+++|++.....+ ........++.|+|++|+. +|+. +.++++++
T Consensus 229 v~v~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~l-y~~El~~~ 307 (406)
T cd06202 229 VPCFVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDI-YKEETEEA 307 (406)
T ss_pred EEEEEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccc-hHHHHHHH
Confidence 4444432 3454433344789999999999999999998654311 0001124689999999999 6664 45666654
Q ss_pred cCCcccCCCceEEEEEEcCCC
Q 009819 299 ICPFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 299 l~~~~~~~~~l~I~IyVTr~~ 319 (524)
.+ ....+++++.++|++
T Consensus 308 ~~----~~~~~~~~~a~SR~~ 324 (406)
T cd06202 308 KN----KGVLTEVYTALSREP 324 (406)
T ss_pred HH----cCCCceEEEEEcCCC
Confidence 32 344567888888753
No 78
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.22 E-value=1.8e-10 Score=123.44 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=65.0
Q ss_pred EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhccC
Q 009819 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 300 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell~ 300 (524)
+|.+..|.|.|........++||||||+|||||++++++.+...+.+ ....++.|+|++|+. +++.+ .++++++.+
T Consensus 248 ~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~v~L~~G~R~~~~d~ly-~~el~~~~~ 324 (416)
T cd06204 248 KVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG--KKVGPTLLFFGCRHPDEDFIY-KDELEEYAK 324 (416)
T ss_pred eEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc--CccCCEEEEEcCCCCCcccch-HHHHHHHHH
Confidence 46666788887654434578999999999999999999875432111 124579999999998 67644 455555432
Q ss_pred CcccCCCceEEEEEEcCCCC
Q 009819 301 PFFSDKLNLETFIYVTRETE 320 (524)
Q Consensus 301 ~~~~~~~~l~I~IyVTr~~~ 320 (524)
...++++++.++|++.
T Consensus 325 ----~~~~~~l~~a~Sr~~~ 340 (416)
T cd06204 325 ----LGGLLELVTAFSREQP 340 (416)
T ss_pred ----cCCceEEEEEECcCCC
Confidence 3456888888887543
No 79
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.22 E-value=7.7e-11 Score=131.65 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=59.9
Q ss_pred EEEEeCccc-CCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccC-CchHHHHHHHHHhcc
Q 009819 222 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI 299 (524)
Q Consensus 222 ~V~VdGPYG-~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs-~~dl~wl~ell~ell 299 (524)
+|.|.||.| .|........++||||+|+|||||+++|++.... + ...+++|+|++|+ ..|+ +++++++++.
T Consensus 435 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~---~---~~~~~~LffG~R~~~~D~-lY~~El~~~~ 507 (600)
T PRK10953 435 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---G---APGKNWLFFGNPHFTEDF-LYQVEWQRYV 507 (600)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHc---C---CCCCeEEEeeccCCccch-hHHHHHHHHH
Confidence 577778775 5544433457899999999999999999987654 1 1357999999998 5566 5566666643
Q ss_pred CCcccCCCceEEEEEEcCCC
Q 009819 300 CPFFSDKLNLETFIYVTRET 319 (524)
Q Consensus 300 ~~~~~~~~~l~I~IyVTr~~ 319 (524)
+ .....++++..+|++
T Consensus 508 ~----~g~l~~l~~afSRd~ 523 (600)
T PRK10953 508 K----EGLLTRIDLAWSRDQ 523 (600)
T ss_pred H----cCCcceEEEEECCCC
Confidence 2 222234666666643
No 80
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.15 E-value=1.6e-10 Score=99.41 Aligned_cols=48 Identities=33% Similarity=0.639 Sum_probs=39.7
Q ss_pred EEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhc
Q 009819 244 LVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 298 (524)
Q Consensus 244 LIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~el 298 (524)
|||||+|||||++|+++++.+ + ..++|+|+|++|+.+++.+.++ ++++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~-----~~~~v~l~~~~r~~~~~~~~~~-l~~~ 48 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-N-----DNRKVTLFYGARTPEDLLFRDE-LEAL 48 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-T-----CTSEEEEEEEESSGGGSTTHHH-HHHH
T ss_pred CeecceeHHHHHHHHHHHHHh-C-----CCCCEEEEEEEcccccccchhH-HHHH
Confidence 799999999999999999876 2 2578999999999999865444 4443
No 81
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.08 E-value=1.1e-09 Score=110.81 Aligned_cols=107 Identities=16% Similarity=0.375 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEe
Q 009819 202 GSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWA 281 (524)
Q Consensus 202 ~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~ 281 (524)
-.|+.-..+.-+.|+|.+ +|.|+||||.++... ....+|||+||.|.+|+.|.+-+++.+.. ..|++.|.|+
T Consensus 241 ~~PpG~mSSyi~sLKpGD--KvtisGPfGEfFaKd-tdaemvFigGGAGmapmRSHIfDqL~rlh-----SkRkis~WYG 312 (410)
T COG2871 241 DAPPGQMSSYIWSLKPGD--KVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRSHIFDQLKRLH-----SKRKISFWYG 312 (410)
T ss_pred CCCccceeeeEEeecCCC--eEEEeccchhhhhcc-CCCceEEEecCcCcCchHHHHHHHHHhhc-----ccceeeeeec
Confidence 444443444555566544 799999999998754 45689999999999999999999888744 2579999999
Q ss_pred ccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCC
Q 009819 282 VKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEP 321 (524)
Q Consensus 282 vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~ 321 (524)
+|+..+. ++.+..+++. ++.++|+.|+.+++....
T Consensus 313 ARS~rE~-fY~Ed~d~L~----ae~pNF~wH~aLSdplpE 347 (410)
T COG2871 313 ARSLREM-FYQEDFDQLQ----AENPNFHWHLALSDPLPE 347 (410)
T ss_pred cchHHHh-HHHHHHHHHH----hhCCCcEEEEEecCCCCc
Confidence 9999998 4555556653 477899999999987653
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.40 E-value=2.1e-06 Score=100.11 Aligned_cols=51 Identities=20% Similarity=0.068 Sum_probs=39.2
Q ss_pred ccCCCcEEEEEeCCCC-Cc--cccceEeEecCCCCCCeEEEEEEeeCchHHHHHH
Q 009819 14 RYNALSFFFLQVRELS-WL--QWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD 65 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~s-~~--~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~ 65 (524)
.++||||+.|++.+.+ .+ .-.||||++...+ ++.++|+++..|.-|+.|.+
T Consensus 818 ~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 818 NFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred cCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEEChHHHHHhc
Confidence 5789999999986433 12 2358999998543 57899999999999987754
No 83
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.36 E-value=7.8e-06 Score=91.44 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=53.0
Q ss_pred ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819 238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR 317 (524)
Q Consensus 238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr 317 (524)
...+++|||.|+|||||.+++++-..+.. ..++.|++++|+.++=.++++++++... .....++....+|
T Consensus 439 ~~~PiIMIG~GTGIAPFRafvq~r~~~~~------~gk~wLfFG~R~~~~DfLY~~Ewe~~~~----~G~~~~l~~AfSR 508 (587)
T COG0369 439 PETPIIMIGPGTGIAPFRAFVQERAANGA------EGKNWLFFGCRHFTEDFLYQEEWEEYLK----DGVLTRLDLAFSR 508 (587)
T ss_pred CCCceEEEcCCCCchhHHHHHHHHHhccc------cCceEEEecCCCCccchhhHHHHHHHHh----cCCceeEEEEEee
Confidence 33789999999999999999998766421 2379999999994433366666666432 3346778888887
Q ss_pred CCC
Q 009819 318 ETE 320 (524)
Q Consensus 318 ~~~ 320 (524)
++.
T Consensus 509 dq~ 511 (587)
T COG0369 509 DQE 511 (587)
T ss_pred cCC
Confidence 764
No 84
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.36 E-value=6.8e-07 Score=76.28 Aligned_cols=54 Identities=24% Similarity=0.209 Sum_probs=43.3
Q ss_pred CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHH
Q 009819 11 TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 65 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~ 65 (524)
..+.|.||||+.|+++.-+...+++||++|.+++ ++.++|+||.. |..|+.|.+
T Consensus 26 ~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~~~G~~S~~L~~ 81 (99)
T PF00970_consen 26 QKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRYPNGRVSRYLHQ 81 (99)
T ss_dssp TT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEECTTSHHHHHHHT
T ss_pred cccccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEeccCCHHHHHHHh
Confidence 4589999999999999445568999999999864 56899999998 888887743
No 85
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.34 E-value=6.2e-06 Score=92.70 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=57.9
Q ss_pred ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819 238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR 317 (524)
Q Consensus 238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr 317 (524)
...+++|||-|+|||||++.+++.....+.+...... +.|+++||+.++...+++++++.. ......++.+.++|
T Consensus 490 p~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~SR 564 (645)
T KOG1158|consen 490 PSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAFSR 564 (645)
T ss_pred CCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeeeec
Confidence 3468999999999999999999987765544322334 899999999998888888877642 23445667777777
Q ss_pred CC
Q 009819 318 ET 319 (524)
Q Consensus 318 ~~ 319 (524)
++
T Consensus 565 eq 566 (645)
T KOG1158|consen 565 EQ 566 (645)
T ss_pred cC
Confidence 65
No 86
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=4.7e-05 Score=85.63 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.5
Q ss_pred EeCccc
Q 009819 225 VEGPYG 230 (524)
Q Consensus 225 VdGPYG 230 (524)
+++|.-
T Consensus 622 ~e~~Mr 627 (1102)
T KOG1924|consen 622 PEVPMR 627 (1102)
T ss_pred CCCccc
Confidence 444433
No 87
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=97.48 E-value=0.00013 Score=74.24 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=32.5
Q ss_pred EEEEeCcccCCCCCc---cccccEEEEecCcChHHHHHHHHHHHHH
Q 009819 222 TASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHR 264 (524)
Q Consensus 222 ~V~VdGPYG~~~~~~---~~~~~vVLIAGGiGITP~lSiL~~Ll~~ 264 (524)
.|.++.|-|+|.... +..+.++|+|||+||||+++||+..+..
T Consensus 242 ~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C 287 (385)
T KOG3378|consen 242 IVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC 287 (385)
T ss_pred eeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc
Confidence 355666777775432 2347899999999999999999987653
No 88
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=92.74 E-value=0.23 Score=54.68 Aligned_cols=69 Identities=19% Similarity=0.360 Sum_probs=44.7
Q ss_pred CeeEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819 219 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK 296 (524)
Q Consensus 219 ~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ 296 (524)
.++.+.|. =|...........++||+-|+|||||++++++-+.+ + ....-|+++||+.+.=.++++...
T Consensus 414 ~~i~~~v~--~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q---~----~~~~~lFfGCR~K~~Df~y~~eW~ 482 (574)
T KOG1159|consen 414 DEIPIKVR--PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ---G----DKENVLFFGCRNKDKDFLYEDEWT 482 (574)
T ss_pred CeEEEEEe--cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh---c----cCCceEEEecccCCccccccchhh
Confidence 44555554 244433322346899999999999999999987653 1 223478889999874333444433
No 89
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=86.24 E-value=2.2 Score=49.30 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=4.6
Q ss_pred CCccccCCC
Q 009819 182 GGISETEPQ 190 (524)
Q Consensus 182 ~~~~~~~~~ 190 (524)
++.++++|+
T Consensus 321 ~~~s~~~p~ 329 (830)
T KOG1923|consen 321 SNLSSGAPQ 329 (830)
T ss_pred CCCcCCCCC
Confidence 344556654
No 90
>PHA03378 EBNA-3B; Provisional
Probab=85.29 E-value=5.6 Score=45.66 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=6.9
Q ss_pred CCeeEEEEeCcccC
Q 009819 218 PTKITASVEGPYGH 231 (524)
Q Consensus 218 p~~l~V~VdGPYG~ 231 (524)
|..+.+....+-|.
T Consensus 804 P~~~q~~~~~~~gq 817 (991)
T PHA03378 804 PTSMQLMPRAAPGQ 817 (991)
T ss_pred CccceecCCCCccc
Confidence 34455555544444
No 91
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=83.18 E-value=16 Score=40.64 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=16.8
Q ss_pred EEEEeCCCCCccccceEeEecCC
Q 009819 21 FFLQVRELSWLQWHPFSVSSSPL 43 (524)
Q Consensus 21 ~~~~~~~~s~~~~~~~~~~S~P~ 43 (524)
.|-+++++++-+.|+|..+-.++
T Consensus 241 nf~h~~hVgwd~~~gf~~~~~p~ 263 (569)
T KOG3671|consen 241 NFPHIPHVGWDEQVGFDSAPAPN 263 (569)
T ss_pred CCccccccCCCcCCCcccCCCCC
Confidence 35667778888899999865444
No 92
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=74.83 E-value=2.3 Score=40.97 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=39.0
Q ss_pred CCccCCCcEEEEEeCCCC-CccccceEeEecCCCCCCeEEEEEEee---CchHHH
Q 009819 12 YLRYNALSFFFLQVRELS-WLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWTEN 62 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s-~~~~~~~~~~S~P~~~~~~i~~~IK~~---G~~~~~ 62 (524)
.++|+||||++|+++.-+ ..++||||++|.|.+ +.++|+||+. |..|+.
T Consensus 25 ~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~~~g~~s~~ 77 (218)
T cd06196 25 GYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYPDHDGVTEQ 77 (218)
T ss_pred cCCCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcCCCCcHhHH
Confidence 589999999999987544 357899999999865 6899999985 445443
No 93
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=74.41 E-value=13 Score=43.42 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=4.9
Q ss_pred hhhHHHHHHHHH
Q 009819 387 SWWYKGLLFLAC 398 (524)
Q Consensus 387 s~~~~~~l~l~~ 398 (524)
+.-++..+.+++
T Consensus 560 sr~lr~VleiIL 571 (830)
T KOG1923|consen 560 SRKLRPVLEIIL 571 (830)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 94
>PHA03378 EBNA-3B; Provisional
Probab=72.29 E-value=52 Score=38.24 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 009819 252 SPFLAILSDILHR 264 (524)
Q Consensus 252 TP~lSiL~~Ll~~ 264 (524)
.|.-.||+.|+..
T Consensus 819 gp~k~ilrqlltg 831 (991)
T PHA03378 819 GPTKQILRQLLTG 831 (991)
T ss_pred CcHHHHHHHHhhc
Confidence 3556677777653
No 95
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=71.55 E-value=3.2 Score=35.04 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.5
Q ss_pred CchhhHHHHHHHHHHhhheeeccceeee
Q 009819 385 IHSWWYKGLLFLACMVGGVLIFGGTVIG 412 (524)
Q Consensus 385 ~~s~~~~~~l~l~~m~~gV~v~g~~vi~ 412 (524)
..++|++.++-++++++|+..+||.+++
T Consensus 36 ~~~lwlqfl~G~~lf~~G~~Fi~GfI~~ 63 (77)
T PF11118_consen 36 FPSLWLQFLAGLLLFAIGVGFIAGFILH 63 (77)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhHhhe
Confidence 3578999999999999999999998875
No 96
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=69.76 E-value=7.7 Score=39.59 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=40.3
Q ss_pred CCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHH
Q 009819 12 YLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 63 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~ 63 (524)
...|+||||++|+++.. ..+|||||+|++.+ ++.++|+||+.|..|+.|
T Consensus 25 ~~~~~pGQfv~l~~~~~--~~~rpySias~~~~-~~~i~l~vk~~G~~T~~L 73 (281)
T PRK06222 25 AKKAKPGQFVIVRIDEK--GERIPLTIADYDRE-KGTITIVFQAVGKSTRKL 73 (281)
T ss_pred hccCCCCeEEEEEeCCC--CCceeeEeeEEcCC-CCEEEEEEEeCCcHHHHH
Confidence 46899999999999743 35799999998754 478999999999988754
No 97
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=67.89 E-value=21 Score=39.89 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=7.8
Q ss_pred cCcChHHHHHHHH
Q 009819 247 GGIGISPFLAILS 259 (524)
Q Consensus 247 GGiGITP~lSiL~ 259 (524)
+|-|=.-+|.-|+
T Consensus 491 ~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 491 SGDGRDALMAQIR 503 (569)
T ss_pred CcccHHHHHHHHH
Confidence 6777666555444
No 98
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=62.71 E-value=16 Score=36.81 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=39.6
Q ss_pred CccCCCcEEEEEeCCCCCccccceEeEecCCCCCC--eEEEEEEeeCchHHHHHHH
Q 009819 13 LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKY--HSSVLIKVLGEWTENLRDY 66 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~--~i~~~IK~~G~~~~~~~~~ 66 (524)
++|.||||+.|++++ ....|||++|.+++ .+ ++.+.+++.|..|..+.++
T Consensus 34 ~~~~pGQfv~l~~~~---~~~~P~si~~~~~~-~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 34 LTFKPGQFVMLRVPG---GVRRPYSLASAPDD-KGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cccCCCcEEEEEeCC---CcEEEeeeccCCCc-CCcEEEEEEEEeCChHHHHHhhc
Confidence 889999999999999 56789999999864 34 4555555589999877643
No 99
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=61.74 E-value=7.6 Score=38.86 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=39.9
Q ss_pred CCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHH
Q 009819 12 YLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 63 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~ 63 (524)
.++|+||||++|+++..+. ||||++|++.+ ++.++|+||+.|.+|+.|
T Consensus 25 ~~~~~pGQ~i~l~~~~~~~---~pySi~s~~~~-~~~l~~~Ik~~G~~S~~L 72 (253)
T cd06221 25 LFTFKPGQFVMLSLPGVGE---APISISSDPTR-RGPLELTIRRVGRVTEAL 72 (253)
T ss_pred cCCcCCCCEEEEEcCCCCc---cceEecCCCCC-CCeEEEEEEeCChhhHHH
Confidence 5899999999999986542 89999999864 478999999998877544
No 100
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=60.89 E-value=14 Score=35.72 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=41.5
Q ss_pred CCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHH
Q 009819 12 YLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 63 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~ 63 (524)
.++|+||||++|+++..+...+||||++|.+.+ .+.++|+||.. |..|+.|
T Consensus 26 ~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~~G~~s~~l 78 (234)
T cd06183 26 VLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYPGGKMSQYL 78 (234)
T ss_pred cCCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECCCCcchhHH
Confidence 589999999999999877778999999998754 35799999985 5555433
No 101
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=56.97 E-value=65 Score=34.68 Aligned_cols=9 Identities=44% Similarity=0.755 Sum_probs=5.0
Q ss_pred CCCCCCCCC
Q 009819 198 PPPQGSPPQ 206 (524)
Q Consensus 198 ~~~~~~~~~ 206 (524)
-++.|.+++
T Consensus 325 ~~s~GppP~ 333 (498)
T KOG4849|consen 325 LGSMGPPPQ 333 (498)
T ss_pred cCcCCCCCC
Confidence 355566665
No 102
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=55.65 E-value=19 Score=35.78 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=44.5
Q ss_pred eEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHH
Q 009819 3 NCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 64 (524)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~ 64 (524)
++.+...+..+.|+||||++|+++.- .++|||||+|++.+ +++++|+||+.|..|..|.
T Consensus 15 ~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~-~~~~~~~vk~~G~~t~~l~ 73 (248)
T cd06219 15 LFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPE-KGTITIVVQVVGKSTRELA 73 (248)
T ss_pred EEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCC-CCEEEEEEEeCCchHHHHH
Confidence 34444323346899999999998642 46899999999754 4789999999999887663
No 103
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=55.51 E-value=15 Score=38.33 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=25.6
Q ss_pred CCChHHHHHhhhcccCCceEEEEEeCChhhHHHHHHHHHh
Q 009819 464 RPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS 503 (524)
Q Consensus 464 RPdl~~I~~~~~~~~~~~~VGVfvCGP~sL~~~Va~~c~~ 503 (524)
|.+-..|-.-+-....+ ++-|++|||.+|.+.++...-+
T Consensus 236 ~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le 274 (286)
T KOG0534|consen 236 FITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLE 274 (286)
T ss_pred ccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHH
Confidence 66666554444444444 7889999999999865444433
No 104
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=54.72 E-value=60 Score=38.24 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=5.7
Q ss_pred eCcccCCCC
Q 009819 226 EGPYGHEVP 234 (524)
Q Consensus 226 dGPYG~~~~ 234 (524)
.||-|..+.
T Consensus 719 ~gpgG~~f~ 727 (894)
T KOG0132|consen 719 GGPGGPPFP 727 (894)
T ss_pred CCCCCCCCC
Confidence 377776654
No 105
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=53.78 E-value=15 Score=37.09 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=36.7
Q ss_pred CCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHH
Q 009819 12 YLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 63 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~ 63 (524)
.+.|+||||++|+++... +||||+++.. +++++|+||+.|..|..|
T Consensus 28 ~~~~~pGQ~v~l~~~~~~---~~pySi~~~~---~~~l~~~Vk~~G~~S~~L 73 (261)
T TIGR02911 28 DGPVKPGQFFEVSLPKYG---EAPISVSGIG---EGYIDLTIRRVGKVTDEV 73 (261)
T ss_pred CCCCCCCcEEEEEecCCC---ccceecCCCC---CCeEEEEEEeCchhhHHH
Confidence 367999999999998643 5899998852 368999999988777544
No 106
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=52.81 E-value=12 Score=36.98 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=48.0
Q ss_pred eeEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHH
Q 009819 2 WNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 64 (524)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~ 64 (524)
+++.+...+..+.|+||||++|+++.-....+|||||+|.+.+ .++++|+||..|.+|+.|.
T Consensus 12 ~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~G~~t~~l~ 73 (243)
T cd06192 12 VLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIRGPKTKLIA 73 (243)
T ss_pred EEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEcCchHHHHH
Confidence 3444443222578999999999997645568999999999754 4789999999999988764
No 107
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=51.46 E-value=35 Score=34.04 Aligned_cols=13 Identities=46% Similarity=0.945 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCc
Q 009819 160 GPPPPLPPPKGNL 172 (524)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (524)
.|+.|..-|+|||
T Consensus 179 ~pssPaetp~gnl 191 (205)
T PF12238_consen 179 QPSSPAETPQGNL 191 (205)
T ss_pred CCCCCCCCccccC
Confidence 3455566677777
No 108
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=50.30 E-value=12 Score=38.10 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=41.4
Q ss_pred eeEEEeecC-CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee
Q 009819 2 WNCGIGPIK-TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL 56 (524)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~ 56 (524)
+++.+.... ..+.|.||||+.|.++. ...+|+|||+|.|++..+.++|+||..
T Consensus 18 ~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~ 71 (267)
T cd06182 18 RHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVV 71 (267)
T ss_pred EEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEE
Confidence 344454332 56899999999999874 456899999999976567899999975
No 109
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=44.29 E-value=21 Score=37.61 Aligned_cols=45 Identities=7% Similarity=-0.151 Sum_probs=35.0
Q ss_pred CCCccCCCcEEEEEeCCC---CCccccceEeEecCCCCCCeEEEEEEee
Q 009819 11 TYLRYNALSFFFLQVREL---SWLQWHPFSVSSSPLEGKYHSSVLIKVL 56 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~S~P~~~~~~i~~~IK~~ 56 (524)
..+.|.||||+-|.++.- ....+++||++|.|++ ++.++|+||+.
T Consensus 78 ~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~ 125 (325)
T PTZ00274 78 EEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK 125 (325)
T ss_pred cccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc
Confidence 468999999999876521 2346899999999864 46899999984
No 110
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=41.52 E-value=20 Score=21.30 Aligned_cols=8 Identities=75% Similarity=1.551 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 009819 130 PPQGAPPP 137 (524)
Q Consensus 130 ~~~~~~~~ 137 (524)
||||.||.
T Consensus 3 ppqG~pPQ 10 (15)
T PF02162_consen 3 PPQGYPPQ 10 (15)
T ss_pred CCcCCCCC
Confidence 34444433
No 111
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=40.41 E-value=36 Score=43.61 Aligned_cols=6 Identities=17% Similarity=0.031 Sum_probs=2.6
Q ss_pred EEEEeC
Q 009819 222 TASVEG 227 (524)
Q Consensus 222 ~V~VdG 227 (524)
-++++|
T Consensus 1765 W~Ri~G 1770 (2039)
T PRK15319 1765 WARFKA 1770 (2039)
T ss_pred EEEEec
Confidence 344444
No 112
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=39.51 E-value=33 Score=34.66 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=36.5
Q ss_pred CccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHH
Q 009819 13 LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 63 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~ 63 (524)
+.|+||||+.|+++... .|||||++.+ ++.++|+||+.|..|+.|
T Consensus 31 ~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L 75 (263)
T PRK08221 31 GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEI 75 (263)
T ss_pred CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHH
Confidence 58999999999997543 3999999874 368999999988777644
No 113
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=38.49 E-value=55 Score=42.07 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=3.2
Q ss_pred ceEEEEE
Q 009819 481 VDVGVIV 487 (524)
Q Consensus 481 ~~VGVfv 487 (524)
.++||-+
T Consensus 1946 gRLGLR~ 1952 (2039)
T PRK15319 1946 TRLGLRV 1952 (2039)
T ss_pred EEEEEEE
Confidence 3455544
No 114
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=34.90 E-value=3.8e+02 Score=29.78 Aligned_cols=8 Identities=50% Similarity=1.099 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 009819 164 PLPPPKGN 171 (524)
Q Consensus 164 ~~~~~~~~ 171 (524)
|.|.|.|-
T Consensus 389 php~p~~~ 396 (518)
T KOG1830|consen 389 PHPLPQGA 396 (518)
T ss_pred CCCCCccc
Confidence 33444443
No 115
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=32.34 E-value=37 Score=39.66 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC
Q 009819 12 YLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPP 91 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (524)
.+.|+||||++|+++..+ .+|||||+|.+.+ ++.++|+||+.|..|+.|.+ +...+. .
T Consensus 25 ~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~-~g~i~~~vk~vG~~T~~L~~-l~~Gd~------------------v 82 (752)
T PRK12778 25 AKSRKPGQFVIVRVGEKG--ERIPLTIADADPE-KGTITLVIQEVGLSTTKLCE-LNEGDY------------------I 82 (752)
T ss_pred hccCCCCeeEEEEeCCCC--CeeEEEeeeeCCC-CCEEEEEEEEcCchHHHHhc-CCCCCE------------------e
Confidence 368999999999997543 5799999999754 47899999999999998874 322221 2
Q ss_pred -CCCCCCCCcccc-hhhhhhhhhCCCCC
Q 009819 92 -PVHPPQGPVRNL-MYENLILVAGGISE 117 (524)
Q Consensus 92 -~~~~~~~~~~~~-~~~~~~~~~~~~~~ 117 (524)
.+.+|.|..-.. .+.++++|+||++-
T Consensus 83 ~~v~GP~G~~~~~~~~~~~llvaGG~Gi 110 (752)
T PRK12778 83 TDVVGPLGNPSEIENYGTVVCAGGGVGV 110 (752)
T ss_pred CeEeCCCCCCccCCCCCeEEEEECCEeH
Confidence 134444433222 13567888888763
No 116
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=32.07 E-value=31 Score=37.42 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=17.0
Q ss_pred EEEEeCChh-hHHHHHHHHHh
Q 009819 484 GVIVCGPPS-LQSSVAKEIRS 503 (524)
Q Consensus 484 GVfvCGP~s-L~~~Va~~c~~ 503 (524)
-||+|||.. |.++|+++..+
T Consensus 365 ~vYvCGp~~~M~~~V~~~L~~ 385 (416)
T cd06204 365 YIYVCGDAKNMARDVEKTLLE 385 (416)
T ss_pred EEEEECCcccchHHHHHHHHH
Confidence 399999998 99988887765
No 117
>PTZ00370 STEVOR; Provisional
Probab=30.73 E-value=21 Score=37.29 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.9
Q ss_pred eeeeehhhhhhhhcc
Q 009819 409 TVIGFWHLWERKSSA 423 (524)
Q Consensus 409 ~vi~~w~~~~~~~~~ 423 (524)
+++|.|.+.||++++
T Consensus 272 iilYiwlyrrRK~sw 286 (296)
T PTZ00370 272 IILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHhhcchh
Confidence 568889887777654
No 118
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=30.62 E-value=45 Score=36.93 Aligned_cols=67 Identities=10% Similarity=0.240 Sum_probs=53.1
Q ss_pred CcccccccCCCCChHHHHHhhhcccCC-ceEEEEE-eCChhhHHHHHHHHHhccccccCCCceEEEEEeec
Q 009819 454 KSSTNILYGSRPDFKEIFGSTSKKWGH-VDVGVIV-CGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 522 (524)
Q Consensus 454 ~~~~~V~~G~RPdl~~I~~~~~~~~~~-~~VGVfv-CGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF 522 (524)
.++..+.||+.-++.+.++++.++++. +-|+|+. |-++-+.+++...|+..... .+-+-+.++.+.|
T Consensus 106 l~E~diVfGGe~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~~--~~~pVi~v~t~gf 174 (466)
T TIGR01282 106 FQEKDIVFGGDKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASKE--LGKPVVPVRCEGF 174 (466)
T ss_pred CCccceecCcHHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhhh--cCCcEEEEeCCCc
Confidence 356789999999999999999999876 6788776 77788899999999886422 1335588888887
No 119
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=30.31 E-value=42 Score=36.51 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=52.1
Q ss_pred CcccccccCCCCChHHHHHhhhcccCC-ceEEEEE-eCChhhHHHHHHHHHhccccccCCCceEEEEEeec
Q 009819 454 KSSTNILYGSRPDFKEIFGSTSKKWGH-VDVGVIV-CGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 522 (524)
Q Consensus 454 ~~~~~V~~G~RPdl~~I~~~~~~~~~~-~~VGVfv-CGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF 522 (524)
.++..+.||+.-++.+.++++.++++. +-|+|+. |-++-+.+++...|+..... .+-.-+.++...|
T Consensus 73 l~E~dvVfGg~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~--~~~pvi~v~t~gf 141 (421)
T cd01976 73 FQEKDIVFGGDKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKE--LGIPVVPVRCEGF 141 (421)
T ss_pred CCccceecCCHHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHHHh--hCCCEEEEeCCCc
Confidence 356789999999999999999999876 7788775 77888999999999885422 1224577777776
No 120
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=29.54 E-value=72 Score=33.67 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.3
Q ss_pred ccEEEEecCcC--hHHHHHHHHHHHH
Q 009819 240 ENLILVAGGIG--ISPFLAILSDILH 263 (524)
Q Consensus 240 ~~vVLIAGGiG--ITP~lSiL~~Ll~ 263 (524)
+++++.|||+| |.|.+++.+++.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46899999999 8999999998864
No 121
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=28.97 E-value=35 Score=36.19 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.0
Q ss_pred EEEEeCCh-hhHHHHHHHHHh
Q 009819 484 GVIVCGPP-SLQSSVAKEIRS 503 (524)
Q Consensus 484 GVfvCGP~-sL~~~Va~~c~~ 503 (524)
-||+|||. .|.++|+++..+
T Consensus 309 ~vYvCG~~~~M~~~V~~~L~~ 329 (360)
T cd06199 309 HFYVCGDAKRMAKDVDAALLD 329 (360)
T ss_pred EEEEECCCccccHHHHHHHHH
Confidence 39999999 899888888765
No 122
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=27.82 E-value=25 Score=36.67 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=11.0
Q ss_pred eeeeehhhhhhhhcc
Q 009819 409 TVIGFWHLWERKSSA 423 (524)
Q Consensus 409 ~vi~~w~~~~~~~~~ 423 (524)
+++|.|.+.||++++
T Consensus 276 iiLYiWlyrrRK~sw 290 (295)
T TIGR01478 276 IILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHhhcccc
Confidence 568889887777654
No 123
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=27.74 E-value=2.9e+02 Score=30.54 Aligned_cols=16 Identities=56% Similarity=0.995 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCCCcc
Q 009819 158 PQGPPPPLPPPKGNLM 173 (524)
Q Consensus 158 ~~~~~~~~~~~~~~~~ 173 (524)
+.+|+|.-||+-|+-|
T Consensus 345 pp~p~p~~PP~p~~~~ 360 (487)
T KOG4672|consen 345 PPPPPPMRPPHPGNGM 360 (487)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 4444444455555544
No 124
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=25.73 E-value=62 Score=33.47 Aligned_cols=44 Identities=23% Similarity=0.079 Sum_probs=35.0
Q ss_pred CCccCCCcEEEEEeCCCCC----ccccceEeEecCCCCCCeEEEEEEee
Q 009819 12 YLRYNALSFFFLQVRELSW----LQWHPFSVSSSPLEGKYHSSVLIKVL 56 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s~----~~~~~~~~~S~P~~~~~~i~~~IK~~ 56 (524)
.+.|+||||+.|+++.-+. ..+|+||++|.+.+ ++.++|+||+.
T Consensus 61 ~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~ 108 (300)
T PTZ00319 61 RLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVY 108 (300)
T ss_pred cCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEe
Confidence 4789999999999975321 46899999888753 47899999974
No 125
>PLN02252 nitrate reductase [NADPH]
Probab=24.90 E-value=99 Score=37.26 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=23.3
Q ss_pred HHHHhhhcccCCceEEEEEeCChhhHHH-HHHHHHhcc
Q 009819 469 EIFGSTSKKWGHVDVGVIVCGPPSLQSS-VAKEIRSHS 505 (524)
Q Consensus 469 ~I~~~~~~~~~~~~VGVfvCGP~sL~~~-Va~~c~~~n 505 (524)
+++++...... .+--||+|||..|.+. +...+.+..
T Consensus 843 ~ll~~~l~~~~-~~~~vyiCGPp~Mi~~av~~~L~~~G 879 (888)
T PLN02252 843 AMLREHLPEGG-DETLALMCGPPPMIEFACQPNLEKMG 879 (888)
T ss_pred HHHHHhcccCC-CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 34555543322 3345999999999984 777777644
No 126
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=24.59 E-value=58 Score=40.09 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=5.5
Q ss_pred ChhhHHHHHHHHH
Q 009819 490 PPSLQSSVAKEIR 502 (524)
Q Consensus 490 P~sL~~~Va~~c~ 502 (524)
|-+.++-+++.++
T Consensus 474 ~vsyqkLLknyv~ 486 (2365)
T COG5178 474 PVSYQKLLKNYVR 486 (2365)
T ss_pred chhHHHHHHHHHH
Confidence 3444444444443
No 127
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.04 E-value=88 Score=34.05 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=50.8
Q ss_pred cccccccCCCCChHHHHHhhhcccCCceEEEEE-eCChhhHHHHHHHHHhccccccCCCceEEEEEeecc
Q 009819 455 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIV-CGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 523 (524)
Q Consensus 455 ~~~~V~~G~RPdl~~I~~~~~~~~~~~~VGVfv-CGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF~ 523 (524)
++..+.||+.-++.+.+.++.++++.+-|+|+. |-++-+.+++...|+.... .+-.-+.++...|.
T Consensus 62 ~E~d~V~Gg~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~---~~~~vi~v~t~gf~ 128 (427)
T cd01971 62 TETEIVFGGEDRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQE---GGAPIVYLETGGFK 128 (427)
T ss_pred CccceEeCCHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhh---cCCCEEEEECCCcC
Confidence 446888999999999999998888878888876 7778889999999987621 22345777777763
No 128
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=23.88 E-value=7.2e+02 Score=25.72 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=14.3
Q ss_pred ccccceEeEecCCC--CCCeEEEEE
Q 009819 31 LQWHPFSVSSSPLE--GKYHSSVLI 53 (524)
Q Consensus 31 ~~~~~~~~~S~P~~--~~~~i~~~I 53 (524)
.|.|==||...|+. +.+.|.+-|
T Consensus 55 mqvhketid~ip~av~gr~~i~vei 79 (341)
T KOG2893|consen 55 MQVHKETIDKIPAAVHGRDNIHVEI 79 (341)
T ss_pred hhhhhhhhhcccccccCCcceeEEE
Confidence 57888888887763 334444444
No 129
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=23.52 E-value=64 Score=39.87 Aligned_cols=25 Identities=32% Similarity=0.693 Sum_probs=21.3
Q ss_pred eEEEEEeCChhhHHHHHHHHHhccc
Q 009819 482 DVGVIVCGPPSLQSSVAKEIRSHSL 506 (524)
Q Consensus 482 ~VGVfvCGP~sL~~~Va~~c~~~n~ 506 (524)
+.-||+|||..|.+++.+..++...
T Consensus 1129 ~~~vyiCGP~~mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1129 DLLVAICGPPVMQRAVKADLLALGY 1153 (1167)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4459999999999999999988543
No 130
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.95 E-value=79 Score=34.27 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=51.4
Q ss_pred cccccccCCCCChHHHHHhhhcccCCceEEEEE-eCChhhHHHHHHHHHhcccc--ccCCCceEEEEEeecc
Q 009819 455 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIV-CGPPSLQSSVAKEIRSHSLM--RECHDPIFHFHSHSFD 523 (524)
Q Consensus 455 ~~~~V~~G~RPdl~~I~~~~~~~~~~~~VGVfv-CGP~sL~~~Va~~c~~~n~~--~~~~~~~f~fHsEsF~ 523 (524)
++..+.||+.-++.+.+.++.++++.+-|.|+. |-++-+.+++...|+..+.. ...+-.-+.++...|.
T Consensus 57 ~E~d~V~Gg~~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~ 128 (428)
T cd01965 57 TEDAAVFGGEDNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFK 128 (428)
T ss_pred CCCCeeECcHHHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCC
Confidence 456888999999999999999888877788776 77888899999999886421 0123345777777663
No 131
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.66 E-value=66 Score=35.01 Aligned_cols=69 Identities=9% Similarity=0.201 Sum_probs=53.0
Q ss_pred cccccccCCCCChHHHHHhhhcccCCceEEEEE-eCChhhHHHHHHHHHhcccc--ccCCCceEEEEEeecc
Q 009819 455 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIV-CGPPSLQSSVAKEIRSHSLM--RECHDPIFHFHSHSFD 523 (524)
Q Consensus 455 ~~~~V~~G~RPdl~~I~~~~~~~~~~~~VGVfv-CGP~sL~~~Va~~c~~~n~~--~~~~~~~f~fHsEsF~ 523 (524)
++..+.||+.-++.+.+.++.++++.+-|+|+. |.++-.-+++...|+..... ...+-.-+.+|...|.
T Consensus 57 ~E~d~VfGg~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~ 128 (417)
T cd01966 57 DEVSTILGGGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFE 128 (417)
T ss_pred CCCcEEECCHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCC
Confidence 457899999999999999999988888888876 77788888999999875422 0013345888887774
No 132
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=22.30 E-value=1.8e+02 Score=36.46 Aligned_cols=7 Identities=86% Similarity=1.877 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 009819 158 PQGPPPP 164 (524)
Q Consensus 158 ~~~~~~~ 164 (524)
||||+||
T Consensus 1903 p~gpqPp 1909 (1958)
T KOG0391|consen 1903 PQGPQPP 1909 (1958)
T ss_pred CCCCCCC
Confidence 3444333
No 133
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.25 E-value=2.5e+02 Score=33.79 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=5.6
Q ss_pred Hhhheeeccce
Q 009819 399 MVGGVLIFGGT 409 (524)
Q Consensus 399 m~~gV~v~g~~ 409 (524)
+-+||+.|--.
T Consensus 457 ~~Vgivtfd~t 467 (1007)
T KOG1984|consen 457 IRVGIVTFDKT 467 (1007)
T ss_pred eEEEEEEecce
Confidence 34566555433
No 134
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.59 E-value=94 Score=33.50 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=51.1
Q ss_pred CcccccccCCCCChHHHHHhhhcccCCceEEEEE-eCChhhHHHHHHHHHhccccccCCCceEEEEEeec
Q 009819 454 KSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIV-CGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 522 (524)
Q Consensus 454 ~~~~~V~~G~RPdl~~I~~~~~~~~~~~~VGVfv-CGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF 522 (524)
.++..+.||+.-++.+-++++.++++.+-|.|+. |-++-+.+++...|+..+... +-.-+.+|...|
T Consensus 61 l~E~d~VfGg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~--~~~vi~v~t~gf 128 (410)
T cd01968 61 LSEKDVIFGGEKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKF--GIPVIPVHSPGF 128 (410)
T ss_pred CCccceeeccHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhh--CCCEEEEECCCc
Confidence 4557899999999999999999988777777775 777888999999998754221 224577777666
No 135
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=20.48 E-value=1.4e+02 Score=32.30 Aligned_cols=68 Identities=7% Similarity=0.165 Sum_probs=51.9
Q ss_pred CcccccccCCC-CChHHHHHhhhcccCCceEEEEE-eCChhhHHHHHHHHHhccccccCCCceEEEEEeecc
Q 009819 454 KSSTNILYGSR-PDFKEIFGSTSKKWGHVDVGVIV-CGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 523 (524)
Q Consensus 454 ~~~~~V~~G~R-Pdl~~I~~~~~~~~~~~~VGVfv-CGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF~ 523 (524)
.++..+.+|+. -++.+.+.++.++++.+-|+|+. |-++...+++...|+..... .+-+-+.+|...|.
T Consensus 58 l~e~Div~G~~~~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~--~~~pVi~v~tpgf~ 127 (407)
T TIGR01279 58 LEESDLSSAAPAEELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTN--FGVPVLFAPASGLD 127 (407)
T ss_pred cCchhhhcccchHHHHHHHHHHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHh--hCCCEEEeeCCCcc
Confidence 34456778877 79999999999998888888876 77788999999999986421 23355777877774
No 136
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=20.36 E-value=88 Score=30.70 Aligned_cols=29 Identities=34% Similarity=0.348 Sum_probs=18.7
Q ss_pred CCCccccceEeEecCCCCCCeEEEEEEee
Q 009819 28 LSWLQWHPFSVSSSPLEGKYHSSVLIKVL 56 (524)
Q Consensus 28 ~s~~~~~~~~~~S~P~~~~~~i~~~IK~~ 56 (524)
+..++-+.|||+|+|....+++.++|..+
T Consensus 174 lp~l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 174 LPPLQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp S-B---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCCCCcceeecccccCCCCEEEEEEEEE
Confidence 34567789999999988788999998864
Done!