BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009820
         (524 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
           Carboxylase And Synthetase In Purine Biosynthesis
          Length = 425

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 303 QFRDMPYISPYSDFSGLRPGTPEKE--KHACGIVHEIL--SLTVEKKTLVDHLTHFREEF 358
           Q+ +   I+    F+GL  G  E +   HA   + EIL  S   +  TLVD    F  + 
Sbjct: 139 QWSEEQLIAAKFCFAGLLIGQTEVDIXSHATQAIFEILEKSWLPQNCTLVDXKIEFGVDV 198

Query: 359 RFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFR 411
              + V   +I + D + +   GDR     +++YRD + +  + L  +K+ F 
Sbjct: 199 TTKEIVLADVIDN-DSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQXVKKNFE 250


>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
           Sap
 pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
           With Maltotetraose
          Length = 877

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 28/116 (24%)

Query: 311 SPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIR 370
           SP   F G R GT     HA           + ++ LVD + +   EF+           
Sbjct: 417 SPRESFGGGRLGTT----HA-----------MSRRVLVDSIKYLTSEFKV---------- 451

Query: 371 HPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQ 426
             D F   + GD D+  +  AY++++ I+ + +++I E +R        P + A Q
Sbjct: 452 --DGFRFDMMGDHDAAAIELAYKEAKAINPN-MIMIGEGWRTFQGDQGKPVKPADQ 504


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,454,646
Number of Sequences: 62578
Number of extensions: 518340
Number of successful extensions: 1103
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 5
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)