Query 009820
Match_columns 524
No_of_seqs 135 out of 183
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fp9_B Mterf domain-containing 64.7 1.9 6.5E-05 44.0 1.1 84 330-421 133-230 (335)
2 3rco_A Tudor domain-containing 55.2 25 0.00087 29.7 6.2 51 106-160 17-77 (89)
3 3lge_E Sorting nexin-9; comple 47.2 8.8 0.0003 26.6 1.7 12 463-474 10-21 (31)
4 3m66_A Mterf3, mterf domain-co 43.0 7.6 0.00026 37.4 1.2 42 336-379 138-180 (270)
5 3s93_A Tudor domain-containing 41.3 87 0.003 26.8 7.5 63 94-160 2-75 (102)
6 3m66_A Mterf3, mterf domain-co 37.5 15 0.00052 35.2 2.4 39 337-380 175-213 (270)
7 4fp9_B Mterf domain-containing 35.7 7.8 0.00027 39.5 0.0 116 106-233 62-178 (335)
8 3t5v_C 26S proteasome complex 27.2 49 0.0017 28.1 3.4 35 438-474 32-67 (89)
9 2ab9_A Pro-SFTI-1; protein, be 24.7 23 0.00078 24.1 0.8 7 514-520 25-31 (31)
10 3eco_A MEPR; mutlidrug efflux 23.8 2.5E+02 0.0086 22.9 7.5 72 104-179 33-108 (139)
11 2qvo_A Uncharacterized protein 21.7 3E+02 0.01 21.7 7.6 64 115-183 27-92 (95)
No 1
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=64.72 E-value=1.9 Score=44.05 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=55.4
Q ss_pred HHHHHHHHhhccchhhhhhhHHHHHHhhhCChH-HHHHhhhhCCCeeEEEeeCCceeEEEeeccC---------CCCCcc
Q 009820 330 ACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQ-QVRGMLIRHPDMFYVSLKGDRDSVFLREAYR---------DSQLID 399 (524)
Q Consensus 330 aVaVlHELLSLTVEKr~~v~~L~hFR~efgLp~-k~r~~L~RHPgIFYVS~Kg~~~TVfLREAY~---------~~~LIe 399 (524)
+|.-.-.+|++.+++ ...++..|+..+|++. .+..|+.++|.|+..|... |+.-|+ -..++.
T Consensus 133 ll~~~P~lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~------L~~K~efLv~~Mgl~~~eIvk 204 (335)
T 4fp9_B 133 VLYCCPEIFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQ------LEYKFQYAYFRMGIKHPDIVK 204 (335)
T ss_dssp HHHHCGGGGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHH------HHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHhCchhhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH------HHHHHHHHHHHhCCCHHHccc
Confidence 344444678888875 4456677889999977 8999999999999887531 122211 011221
Q ss_pred ----CChHhHHHHHHHHHHcCCCcCC
Q 009820 400 ----KDRLLVIKEKFRALVSVPRFPK 421 (524)
Q Consensus 400 ----k~PL~~iReK~~~Lm~~~~~~~ 421 (524)
-..|-.||.|..-|..+|+.-+
T Consensus 205 P~~l~ySLeRIkpRH~fL~~lG~~q~ 230 (335)
T 4fp9_B 205 SEYLQYSLTKIKQRHIYLERLGRYQT 230 (335)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhccHHHHHHHHHHHHHcCCccC
Confidence 2345578888888888888633
No 2
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=55.21 E-value=25 Score=29.70 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCcccHHHHhhc----------ccccCCCccchHHHHHHhCCcceEEeecCceee
Q 009820 106 KIRKILVSQPDRIMSLKQLGRF----------RRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSL 160 (524)
Q Consensus 106 ~Lk~lI~s~P~~~lpl~~Lsk~----------r~~LgL~~~~~v~~FLrkYP~iF~vf~~~~~~l 160 (524)
-|+.+|.|.++. ++++.|.+- .++||+. .+.+||+--|.++.+-..+.+..
T Consensus 17 ~iRslL~S~k~g-vtl~~L~~DYr~l~G~~iP~r~lGy~---sl~~fL~siPdvv~~~~~~~Gev 77 (89)
T 3rco_A 17 MLRAVLQSHKNG-VALPRLQGEYRSLTGDWIPFKQLGFP---TLEAYLRSVPAVVRIETSRSGEI 77 (89)
T ss_dssp HHHHHHHTCTTC-EEHHHHHHHHHHHHSSCCCTTTTTCS---SHHHHHHTCTTTEEEEECTTSCE
T ss_pred HHHHHhhcCCCC-CCHHHHHHHHHHHhCCcCChhhhCcc---cHHHHHhcccCeEEEEecCCCCE
Confidence 456888888876 788888553 3566765 48999999999999755454444
No 3
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=47.19 E-value=8.8 Score=26.56 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCC
Q 009820 463 VDDGNEDDWSDE 474 (524)
Q Consensus 463 ~~~~~~~~~~~~ 474 (524)
+||||+|+|.+.
T Consensus 10 ~DDDWDdeWDG~ 21 (31)
T 3lge_E 10 DDDDWDEDWDGP 21 (31)
T ss_pred Cccccccccccc
Confidence 455788888744
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=42.96 E-value=7.6 Score=37.36 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=30.5
Q ss_pred HHhhccchhhhhhhHHHHHHhhhCChH-HHHHhhhhCCCeeEEEe
Q 009820 336 EILSLTVEKKTLVDHLTHFREEFRFSQ-QVRGMLIRHPDMFYVSL 379 (524)
Q Consensus 336 ELLSLTVEKr~~v~~L~hFR~efgLp~-k~r~~L~RHPgIFYVS~ 379 (524)
.+|.+.+++ ...++..|.+++|++. .+..++.++|.|+..|.
T Consensus 138 ~il~~s~e~--~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~ 180 (270)
T 3m66_A 138 RLLTGSLEP--VKENMKVYRLELGFKHNEIQHMITRIPKMLTANK 180 (270)
T ss_dssp GGGTSCSHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH
T ss_pred cceeechHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH
Confidence 566666665 2445666778888887 57778888888888886
No 5
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=41.30 E-value=87 Score=26.78 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=44.2
Q ss_pred HHHhhhhhhHHHH-HHHHHhhCCCCcccHHHHhhc----------ccccCCCccchHHHHHHhCCcceEEeecCceee
Q 009820 94 VIQRDKKLKLVSK-IRKILVSQPDRIMSLKQLGRF----------RRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSL 160 (524)
Q Consensus 94 ~i~rek~lr~vl~-Lk~lI~s~P~~~lpl~~Lsk~----------r~~LgL~~~~~v~~FLrkYP~iF~vf~~~~~~l 160 (524)
.+++++-+..|-+ |+.+|.|.++ .++++.|.+- .+.||+. .+.+||+--|.++.+...+.+..
T Consensus 2 ~~~~~~~l~~vkk~irslLiS~K~-gvtl~~L~~dYr~~~G~~iP~r~lGy~---sl~~fL~sipdvv~~~~~~~G~~ 75 (102)
T 3s93_A 2 MSEQERIQECLRKEIRSLLISTKD-GLSPQELEKEYLLMVGNHLPLRILGYR---STMELVLDMPDVVRVCPGAGGTV 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS-CBCHHHHHHHHHHHHSSCCCTGGGTCS---SHHHHHHTCTTTEEEECCGGGCC
T ss_pred CccHHHHHHHHHHHHHHhheeCCC-CcCHHHHHHHHHHHcCCcCCchhcCcC---CHHHHHHcCCCeEEEEecCCCCE
Confidence 4567777766544 5788888775 6788888553 2456665 48899999999998765554443
No 6
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=37.50 E-value=15 Score=35.19 Aligned_cols=39 Identities=13% Similarity=0.383 Sum_probs=29.7
Q ss_pred HhhccchhhhhhhHHHHHHhhhCChHHHHHhhhhCCCeeEEEee
Q 009820 337 ILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLK 380 (524)
Q Consensus 337 LLSLTVEKr~~v~~L~hFR~efgLp~k~r~~L~RHPgIFYVS~K 380 (524)
+|++.. .....++.-|.+++|++.. .+.++|.+|..|..
T Consensus 175 il~~s~--~~l~~k~~fL~~~mg~~~~---~i~~~P~~l~~Sle 213 (270)
T 3m66_A 175 MLTANK--MKLTETFDFVHNVMSIPHH---IIVKFPQVFNTRLF 213 (270)
T ss_dssp GGTSCH--HHHHHHHHHHHTTSCCCHH---HHHHCGGGGGSCHH
T ss_pred hheecH--HHHHHHHHHHHHHhCCCHH---HHHhCchHhhCCHH
Confidence 455555 3466778888899999986 47899999988854
No 7
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=35.69 E-value=7.8 Score=39.52 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=53.3
Q ss_pred HHHHHHhhCCCCc-ccHHHHhhcccccCCCccchHHHHHHhCCcceEEeecCceeeeeecCHHHHHHHHHHHHHHhhchH
Q 009820 106 KIRKILVSQPDRI-MSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMED 184 (524)
Q Consensus 106 ~Lk~lI~s~P~~~-lpl~~Lsk~r~~LgL~~~~~v~~FLrkYP~iF~vf~~~~~~l~~rLT~~A~~L~~EE~~v~~e~e~ 184 (524)
+|..+|..+|.-. -.+..+-..-..|||+. -.+...|+++|.|+..-.. +|.+...-| ++..+-...-.
T Consensus 62 ~i~~il~~~P~il~~~l~~~i~~L~~LGls~-e~V~kiL~k~P~lL~~s~e-------~L~~~l~fL--~~lGl~~~~i~ 131 (335)
T 4fp9_B 62 HINELLSVRRGASLQQLLDIISEFILLGLNP-EPVCVVLKKSPQLLKLPIM-------QMRKRSSYL--QKLGLGEGKLK 131 (335)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHTTCCH-HHHHHHHHHCGGGGGSCHH-------HHHHHHHHH--HHTTCTTTTHH
T ss_pred HHHHHHHhCcccchhHHHHHHHHHHHcCCCH-HHHHHHHHhChhhccCCHH-------HHHHHHHHH--HHcCCCHHHHH
Confidence 4556666666421 01111122223467764 4577777777777643211 122221111 11111111112
Q ss_pred HHHHHHHHHhccccCccccHHHHHHHHHhcCCChhhhhhhcccCCCceE
Q 009820 185 LLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFR 233 (524)
Q Consensus 185 ~~V~rLrKLLMMS~~rrLpL~kL~~lr~dLGLP~DFr~slv~kyPd~Fr 233 (524)
.++.+.-+||.+|..+ -...+..++..+|+..+=...++.++|..+.
T Consensus 132 ~ll~~~P~lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~ 178 (335)
T 4fp9_B 132 RVLYCCPEIFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLR 178 (335)
T ss_dssp HHHHHCGGGGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGT
T ss_pred HHHHhCchhhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhh
Confidence 2333434455555443 1234455666677777666666667776664
No 8
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.20 E-value=49 Score=28.14 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=13.8
Q ss_pred CCCCCCCCCCcccccc-ccccCCCCCCCCCCCCCCCCC
Q 009820 438 PEEGSGEDGEDWSIDD-YMTDGQFDDVDDGNEDDWSDE 474 (524)
Q Consensus 438 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 474 (524)
+++.++=..++|.... ....|+ .+..-|+|+|.|+
T Consensus 32 DDEFEeFp~edW~~~e~~~~~~~--~~~~lWEddWDDD 67 (89)
T 3t5v_C 32 DDEFEDFPIDTWANGETIKSNAV--TQTNIWEENWDDV 67 (89)
T ss_dssp TTSCCCCCCC-----------CC--CCCCCBCTTTTTC
T ss_pred ccccccCCcccCCCcccccccCc--ccccccccccccc
Confidence 3333334457898433 222222 3455789999665
No 9
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=24.66 E-value=23 Score=24.15 Aligned_cols=7 Identities=86% Similarity=1.815 Sum_probs=6.0
Q ss_pred cCCCCCc
Q 009820 514 VFPDGRP 520 (524)
Q Consensus 514 ~~~~~~~ 520 (524)
.||||||
T Consensus 25 cfpdgrp 31 (31)
T 2ab9_A 25 CFPDGRP 31 (31)
T ss_dssp SSSCCCC
T ss_pred ccCCCCC
Confidence 4999997
No 10
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.75 E-value=2.5e+02 Score=22.89 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEeecC--ceeeeeecCHHHHHHHHHHHHHH
Q 009820 104 VSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEIIEEG--VYSLRFKLTPEAERLYLEEVKVR 179 (524)
Q Consensus 104 vl~Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf~~~--~~~l~~rLT~~A~~L~~EE~~v~ 179 (524)
-..+...|...|+..+++.+|.+ .+|++.. .+++.=|.+---| +...++ .....+.||++|.+++.+-....
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~---~l~~~~~tvs~~l~~Le~~Gli-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 108 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAK---ALQRTGPTVSNLLRNLERKKLI-YRYVDAQDTRRKNIGLTTSGIKLVEAFTSIF 108 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSE-EEEECCC--CCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHH---HhCCCcccHHHHHHHHHHCCCE-eecCCCCCCCeeeeEECHHHHHHHHHHHHHH
Confidence 34555667777756778888875 6788643 1233334444333 333333 23458899999999887644433
No 11
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=21.72 E-value=3e+02 Score=21.70 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=41.0
Q ss_pred CCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEeecCceeeeeecCHHHHHHHHHHHHHHhhch
Q 009820 115 PDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEME 183 (524)
Q Consensus 115 P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf~~~~~~l~~rLT~~A~~L~~EE~~v~~e~e 183 (524)
++..+++.+|++ .+|++.. .+++.-|.+.=-| ..........+.||++|.++..+-..+.++.+
T Consensus 27 ~~~~~t~~eLa~---~l~i~~~tvs~~l~~Le~~Glv--~~~~d~R~~~v~LT~~G~~~~~~~~~~~~~~e 92 (95)
T 2qvo_A 27 GGNDVYIQYIAS---KVNSPHSYVWLIIKKFEEAKMV--ECELEGRTKIIRLTDKGQKIAQQIKSIIDIME 92 (95)
T ss_dssp TTCCEEHHHHHH---HSSSCHHHHHHHHHHHHHTTSE--EEEEETTEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHH---HHCcCHHHHHHHHHHHHHCcCc--cCCCCCCeEEEEEChhHHHHHHHHHHHHHHHh
Confidence 444578888876 7888753 2444556666666 22222334578999999999887666665544
Done!