Query 009820
Match_columns 524
No_of_seqs 135 out of 183
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 13:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009820.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009820hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 50.1 22 0.0016 28.1 7.3 73 104-179 31-106 (135)
2 d3ctaa1 a.4.5.28 (A:5-89) Ta10 18.7 71 0.0051 23.9 4.8 69 103-177 6-77 (85)
3 d2a61a1 a.4.5.28 (A:5-143) Tra 15.2 2.4E+02 0.018 21.7 8.7 70 107-181 35-107 (139)
4 d1ub9a_ a.4.5.28 (A:) Hypothet 15.1 2.1E+02 0.015 20.9 7.8 66 105-175 19-87 (100)
5 d2frha1 a.4.5.28 (A:102-216) P 14.5 1.1E+02 0.0079 23.6 5.1 64 108-174 39-105 (115)
6 d1sfka_ a.190.1.1 (A:) Flavivi 13.4 32 0.0023 26.3 1.3 19 341-359 47-65 (73)
7 d2etha1 a.4.5.28 (A:1-140) Put 11.6 3E+02 0.022 21.0 7.2 68 107-179 37-107 (140)
8 d1p4xa1 a.4.5.28 (A:1-125) Sta 10.7 3.3E+02 0.024 20.8 7.9 68 106-176 38-108 (125)
9 d1hsja1 a.4.5.28 (A:373-487) S 10.4 3.3E+02 0.024 20.6 6.9 67 106-175 36-105 (115)
10 d2hr3a1 a.4.5.28 (A:2-146) Pro 9.5 3.7E+02 0.027 20.6 8.8 62 109-174 41-105 (145)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=50.10 E-value=22 Score=28.11 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEeecC-ceeeeeecCHHHHHHHHHHHHHH
Q 009820 104 VSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEIIEEG-VYSLRFKLTPEAERLYLEEVKVR 179 (524)
Q Consensus 104 vl~Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf~~~-~~~l~~rLT~~A~~L~~EE~~v~ 179 (524)
-..+-.+|..+|++.++..+|++ .+|++.. .+++.-|.+-=-|-...... .....+.||++|.+++.+=.+..
T Consensus 31 q~~vL~~l~~~~~~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~ 106 (135)
T d3broa1 31 QMTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYM 106 (135)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 44566677888999999999886 6777643 24555566666666554333 33568999999998887644433
No 2
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=18.70 E-value=71 Score=23.90 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHhhcccccCCCccchHHHHHH---hCCcceEEeecCceeeeeecCHHHHHHHHHHHH
Q 009820 103 LVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLR---KFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVK 177 (524)
Q Consensus 103 ~vl~Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~~~v~~FLr---kYP~iF~vf~~~~~~l~~rLT~~A~~L~~EE~~ 177 (524)
.+-.|..+-....+..|+..+|++ .+|+..+ .+...|. +-=-|-. .......++.||++|.+++.++..
T Consensus 6 ~l~~l~~~~~~~~~~~lt~~eLa~---~l~i~~~-~vs~~l~~Le~~GlV~r--~~D~R~~~i~LT~~G~~~l~~~~~ 77 (85)
T d3ctaa1 6 AIKKIKEAAEASNRAYLTSSKLAD---MLGISQQ-SASRIIIDLEKNGYITR--TVTKRGQILNITEKGLDVLYTEFA 77 (85)
T ss_dssp HHHHHHHHTTTSSEEECCHHHHHH---HHTSCHH-HHHHHHHHHHHTTSEEE--EEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCCCCHHHHHH---HHCCCHH-HHHHHHHHHHHCCCeee--ecccccccceECHHHHHHHHHHHH
Confidence 333444433333344678788775 7787643 3444433 3333332 122234578999999988877653
No 3
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=15.17 E-value=2.4e+02 Score=21.67 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=43.1
Q ss_pred HHHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEeecC-ceeeeeecCHHHHHHHHHHHHHHhh
Q 009820 107 IRKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEIIEEG-VYSLRFKLTPEAERLYLEEVKVRNE 181 (524)
Q Consensus 107 Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf~~~-~~~l~~rLT~~A~~L~~EE~~v~~e 181 (524)
+-..|...+ .+++.+|.+ .+|++.. .+++.-|.+---|-..-... ....++.||++|.+++.+=......
T Consensus 35 iL~~i~~~~--~~t~~~la~---~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~ 107 (139)
T d2a61a1 35 ILQKIYFEG--PKRPGELSV---LLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERREN 107 (139)
T ss_dssp HHHHHHHHC--CBCHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHH---HhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 334444444 356677665 8888754 24555566666666554333 3456999999999988765444433
No 4
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.13 E-value=2.1e+02 Score=20.95 Aligned_cols=66 Identities=15% Similarity=0.008 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcce-EEeecCceeeeeecCHHHHHHHHHH
Q 009820 105 SKIRKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVF-EIIEEGVYSLRFKLTPEAERLYLEE 175 (524)
Q Consensus 105 l~Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF-~vf~~~~~~l~~rLT~~A~~L~~EE 175 (524)
+.|..+|..++ .+++.+|.+ .+|+..+ .+.+.=|.+.=-|= +.........+++||++|.+++.+-
T Consensus 19 ~~IL~~L~~~~--~~~~~eLa~---~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~ 87 (100)
T d1ub9a_ 19 LGIMIFLLPRR--KAPFSQIQK---VLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRF 87 (100)
T ss_dssp HHHHHHHHHHS--EEEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHhccCC--CeeHHHHHH---HHhhccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHHHHH
Confidence 44556665543 367777765 7888753 12334444444442 2233333456899999998776553
No 5
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=14.47 E-value=1.1e+02 Score=23.63 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=41.6
Q ss_pred HHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEeecC-ceeeeeecCHHHHHHHHH
Q 009820 108 RKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEIIEEG-VYSLRFKLTPEAERLYLE 174 (524)
Q Consensus 108 k~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf~~~-~~~l~~rLT~~A~~L~~E 174 (524)
-..|...|++.+++.+|.+ .+++... .+++.-|.+---|-..-.+. ....++.||++|.+.+.+
T Consensus 39 L~~l~~~~~~~~t~~~la~---~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 39 LTYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHH---HHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 3457778888888888876 7777643 24455555555554433222 234689999999887655
No 6
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=13.37 E-value=32 Score=26.31 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=17.4
Q ss_pred cchhhhhhhHHHHHHhhhC
Q 009820 341 TVEKKTLVDHLTHFREEFR 359 (524)
Q Consensus 341 TVEKr~~v~~L~hFR~efg 359 (524)
+|+|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 6889999999999999986
No 7
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=11.65 E-value=3e+02 Score=21.00 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=39.7
Q ss_pred HHHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEeecC-ceeeeeecCHHHHHHHHHHHHHH
Q 009820 107 IRKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEIIEEG-VYSLRFKLTPEAERLYLEEVKVR 179 (524)
Q Consensus 107 Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf~~~-~~~l~~rLT~~A~~L~~EE~~v~ 179 (524)
+-..|..+|+ +++.+|++ .+|++.. .+++.=|.+-=-|=..-.+. ....++.||++|.+++.+-....
T Consensus 37 iL~~l~~~~~--~t~~~La~---~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~ 107 (140)
T d2etha1 37 AFLYVALFGP--KKMKEIAE---FLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNF 107 (140)
T ss_dssp HHHHHHHHCC--BCHHHHHH---HTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--cCHHHHHH---HHCcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHHHHHHHH
Confidence 3345555554 45666664 7888753 23334444444444443232 33568999999999887765444
No 8
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=10.71 E-value=3.3e+02 Score=20.82 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEE-eecCceeeeeecCHHHHHHHHHHH
Q 009820 106 KIRKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEI-IEEGVYSLRFKLTPEAERLYLEEV 176 (524)
Q Consensus 106 ~Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~v-f~~~~~~l~~rLT~~A~~L~~EE~ 176 (524)
.+-..|...|++.+++.+|.+ .+++... .+++.=|.+---|=.. .........+.||++|.++..+-.
T Consensus 38 ~iL~~l~~~~~~~~t~~eia~---~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~ 108 (125)
T d1p4xa1 38 ILLTYLFHQQENTLPFKKIVS---DLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERV 108 (125)
T ss_dssp HHHHHHHSCSCSEEEHHHHHH---HSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcCHHHHHH---HhCCCcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHHHHHH
Confidence 334566677777888888876 6666543 1233333333333222 222244678999999988776543
No 9
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=10.40 E-value=3.3e+02 Score=20.58 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEee-cCceeeeeecCHHHHHHHHHH
Q 009820 106 KIRKILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEIIE-EGVYSLRFKLTPEAERLYLEE 175 (524)
Q Consensus 106 ~Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf~-~~~~~l~~rLT~~A~~L~~EE 175 (524)
.+..+|...++..+++..|++ .+|+... -+++.-|.+---|=.... ......++.||++|.+++.+-
T Consensus 36 ~vL~~l~~~~~~~~t~~ela~---~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 105 (115)
T d1hsja1 36 YILNHILRSESNEISSKEIAK---CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 105 (115)
T ss_dssp HHHHHHHTCSCSEEEHHHHHH---SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred HHHHHHHccCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHH
Confidence 344556666777788888886 7787643 133333333333332222 223456999999999888653
No 10
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.49 E-value=3.7e+02 Score=20.59 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=36.8
Q ss_pred HHHhhCCCCcccHHHHhhcccccCCCcc--chHHHHHHhCCcceEEe-ecCceeeeeecCHHHHHHHHH
Q 009820 109 KILVSQPDRIMSLKQLGRFRRDLGLTKK--RRFIALLRKFPAVFEII-EEGVYSLRFKLTPEAERLYLE 174 (524)
Q Consensus 109 ~lI~s~P~~~lpl~~Lsk~r~~LgL~~~--~~v~~FLrkYP~iF~vf-~~~~~~l~~rLT~~A~~L~~E 174 (524)
..|...++ .+++..|++ .+|++.. .+++.-|.+-=-|=..- .......++.||++|.+++.+
T Consensus 41 ~~L~~~~g-~~t~~~La~---~~~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~ 105 (145)
T d2hr3a1 41 GAIDRLGG-DVTPSELAA---AERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYG 105 (145)
T ss_dssp HHHHHTTS-CBCHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHH
T ss_pred HHHHHcCC-CCCHHHHHH---HHCCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHHH
Confidence 44445554 578888876 7788653 24555555555552221 222345689999999988765
Done!