Query 009822
Match_columns 524
No_of_seqs 333 out of 2188
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 17:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 9E-38 2E-42 332.2 16.4 321 164-504 108-445 (590)
2 cd04016 C2_Tollip C2 domain pr 99.8 5.1E-20 1.1E-24 158.7 15.0 111 14-125 2-121 (121)
3 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.8E-18 3.8E-23 149.0 14.9 111 15-125 1-114 (116)
4 KOG1030 Predicted Ca2+-depende 99.8 5.8E-19 1.3E-23 155.5 11.1 111 13-124 5-117 (168)
5 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.3E-18 5E-23 149.4 13.7 100 15-114 1-111 (126)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 2.4E-18 5.3E-23 150.4 13.9 100 16-115 1-110 (126)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 6.8E-18 1.5E-22 146.5 14.7 112 15-126 1-120 (121)
8 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.1E-17 4.5E-22 143.0 15.2 111 14-124 1-117 (119)
9 cd08681 C2_fungal_Inn1p-like C 99.8 1.2E-17 2.5E-22 144.3 13.0 110 14-124 1-117 (118)
10 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.5E-17 3.2E-22 145.7 13.7 111 15-125 1-125 (127)
11 cd04024 C2A_Synaptotagmin-like 99.8 1.8E-17 3.8E-22 145.3 14.1 112 14-125 1-128 (128)
12 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.5E-17 5.3E-22 142.8 14.4 109 16-124 2-120 (121)
13 cd08677 C2A_Synaptotagmin-13 C 99.7 1.1E-17 2.4E-22 142.1 11.8 100 10-112 10-118 (118)
14 cd08375 C2_Intersectin C2 doma 99.7 5E-17 1.1E-21 143.7 15.6 115 11-125 12-135 (136)
15 cd04019 C2C_MCTP_PRT_plant C2 99.7 4.9E-17 1.1E-21 146.0 15.0 112 15-126 1-132 (150)
16 cd08678 C2_C21orf25-like C2 do 99.7 6.7E-17 1.5E-21 141.3 14.5 109 16-126 1-120 (126)
17 cd08391 C2A_C2C_Synaptotagmin_ 99.7 6.8E-17 1.5E-21 140.1 14.2 111 14-125 1-121 (121)
18 cd08381 C2B_PI3K_class_II C2 d 99.7 4E-17 8.7E-22 141.7 12.4 99 13-112 12-121 (122)
19 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 8E-17 1.7E-21 139.7 14.2 109 16-124 2-120 (121)
20 cd08394 C2A_Munc13 C2 domain f 99.7 7.8E-17 1.7E-21 138.2 13.4 104 14-122 2-113 (127)
21 cd04046 C2_Calpain C2 domain p 99.7 1.8E-16 3.9E-21 138.5 16.1 100 13-113 2-101 (126)
22 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.4E-16 3E-21 138.7 14.8 99 16-114 2-103 (123)
23 cd04036 C2_cPLA2 C2 domain pre 99.7 9.2E-17 2E-21 139.0 13.6 111 15-126 1-118 (119)
24 cd04028 C2B_RIM1alpha C2 domai 99.7 1E-16 2.2E-21 142.4 13.3 104 13-116 28-140 (146)
25 cd04027 C2B_Munc13 C2 domain s 99.7 1.5E-16 3.2E-21 139.3 14.0 111 15-125 2-125 (127)
26 cd08395 C2C_Munc13 C2 domain t 99.7 1.2E-16 2.7E-21 137.4 12.7 99 15-114 1-112 (120)
27 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.4E-16 3.1E-21 138.0 13.0 105 16-125 2-119 (121)
28 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.2E-16 2.6E-21 139.4 12.1 103 11-113 12-125 (125)
29 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.1E-16 4.5E-21 139.5 13.1 100 15-114 1-115 (133)
30 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.3E-16 4.9E-21 137.6 12.9 103 11-113 12-125 (125)
31 cd04015 C2_plant_PLD C2 domain 99.7 5.1E-16 1.1E-20 140.8 15.6 112 13-125 6-157 (158)
32 cd08387 C2A_Synaptotagmin-8 C2 99.7 3.3E-16 7.2E-21 136.5 13.0 103 11-113 13-123 (124)
33 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.4E-16 5.2E-21 137.8 12.0 103 11-113 12-128 (128)
34 cd04017 C2D_Ferlin C2 domain f 99.7 8.1E-16 1.8E-20 136.1 15.6 113 14-126 1-132 (135)
35 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.1E-15 2.4E-20 133.5 16.0 110 14-127 4-124 (126)
36 cd04031 C2A_RIM1alpha C2 domai 99.7 3.4E-16 7.3E-21 136.6 12.5 103 11-113 13-125 (125)
37 cd04050 C2B_Synaptotagmin-like 99.7 3.7E-16 8.1E-21 132.0 11.9 97 15-114 1-102 (105)
38 cd04010 C2B_RasA3 C2 domain se 99.7 4.1E-16 8.8E-21 139.4 12.5 99 15-115 1-123 (148)
39 cd08680 C2_Kibra C2 domain fou 99.7 4.2E-16 9.1E-21 135.2 11.8 103 10-112 10-124 (124)
40 cd08385 C2A_Synaptotagmin-1-5- 99.7 6.4E-16 1.4E-20 134.7 13.0 103 11-113 13-123 (124)
41 cd04043 C2_Munc13_fungal C2 do 99.7 1.4E-15 3.1E-20 132.8 15.3 112 14-126 1-121 (126)
42 cd04041 C2A_fungal C2 domain f 99.7 2.8E-16 6.1E-21 134.2 10.4 99 14-113 1-107 (111)
43 cd04014 C2_PKC_epsilon C2 doma 99.7 1.8E-15 3.8E-20 133.4 15.7 112 13-126 3-129 (132)
44 cd08688 C2_KIAA0528-like C2 do 99.7 4.7E-16 1E-20 132.6 11.0 99 16-114 1-109 (110)
45 cd08382 C2_Smurf-like C2 domai 99.7 2E-15 4.4E-20 131.3 14.9 110 16-126 2-121 (123)
46 cd04039 C2_PSD C2 domain prese 99.7 8.1E-16 1.7E-20 130.4 11.9 89 14-102 1-95 (108)
47 PF02893 GRAM: GRAM domain; I 99.7 1.4E-16 3E-21 123.7 6.2 66 164-229 2-69 (69)
48 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.7E-15 3.8E-20 132.1 13.6 104 11-114 13-125 (125)
49 cd08388 C2A_Synaptotagmin-4-11 99.7 1.5E-15 3.3E-20 132.9 13.1 104 11-114 13-128 (128)
50 cd04045 C2C_Tricalbin-like C2 99.6 2.9E-15 6.3E-20 129.6 14.3 101 14-114 1-103 (120)
51 cd04044 C2A_Tricalbin-like C2 99.6 1.8E-15 3.9E-20 131.7 13.1 113 14-126 2-123 (124)
52 cd04049 C2_putative_Elicitor-r 99.6 2.4E-15 5.1E-20 131.1 13.8 105 14-118 1-112 (124)
53 cd08685 C2_RGS-like C2 domain 99.6 1.2E-15 2.5E-20 131.8 11.6 100 12-112 10-119 (119)
54 cd04051 C2_SRC2_like C2 domain 99.6 1E-15 2.3E-20 133.6 11.4 110 15-124 1-124 (125)
55 cd08521 C2A_SLP C2 domain firs 99.6 2E-15 4.3E-20 131.3 12.3 102 11-112 11-123 (123)
56 cd08384 C2B_Rabphilin_Doc2 C2 99.6 6.1E-16 1.3E-20 136.5 8.9 108 11-118 10-125 (133)
57 cd04030 C2C_KIAA1228 C2 domain 99.6 2.3E-15 5.1E-20 131.7 12.4 103 11-113 13-127 (127)
58 cd08389 C2A_Synaptotagmin-14_1 99.6 3.4E-15 7.3E-20 130.0 12.7 103 11-114 13-124 (124)
59 cd04038 C2_ArfGAP C2 domain pr 99.6 2.8E-15 6.1E-20 133.6 12.4 88 14-102 2-89 (145)
60 cd08390 C2A_Synaptotagmin-15-1 99.6 4.9E-15 1.1E-19 128.9 13.0 104 11-114 11-123 (123)
61 cd04011 C2B_Ferlin C2 domain s 99.6 4.3E-15 9.4E-20 126.8 12.4 98 13-114 3-110 (111)
62 cd08676 C2A_Munc13-like C2 dom 99.6 3.9E-15 8.5E-20 133.5 12.4 101 8-112 22-153 (153)
63 cd08406 C2B_Synaptotagmin-12 C 99.6 9.6E-16 2.1E-20 135.2 8.2 107 11-117 12-126 (136)
64 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 3.9E-15 8.6E-20 135.5 12.1 105 10-114 23-138 (162)
65 cd04018 C2C_Ferlin C2 domain t 99.6 5.8E-15 1.3E-19 132.2 12.9 99 16-114 2-125 (151)
66 cd04032 C2_Perforin C2 domain 99.6 6.8E-15 1.5E-19 127.9 12.6 93 10-103 24-118 (127)
67 cd08373 C2A_Ferlin C2 domain f 99.6 1.8E-14 3.8E-19 126.1 14.9 94 20-115 2-100 (127)
68 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.5E-15 7.6E-20 132.2 9.6 108 11-118 12-127 (136)
69 cd08407 C2B_Synaptotagmin-13 C 99.6 2.8E-15 6.1E-20 132.3 8.8 105 10-114 11-125 (138)
70 cd08675 C2B_RasGAP C2 domain s 99.6 8.6E-15 1.9E-19 129.6 11.5 99 16-115 1-121 (137)
71 KOG0696 Serine/threonine prote 99.6 5.5E-16 1.2E-20 153.3 4.0 106 13-118 179-293 (683)
72 cd08402 C2B_Synaptotagmin-1 C2 99.6 2.2E-15 4.7E-20 133.6 7.5 107 10-116 11-125 (136)
73 cd04040 C2D_Tricalbin-like C2 99.6 1.5E-14 3.2E-19 124.3 12.4 104 16-119 1-108 (115)
74 cd08383 C2A_RasGAP C2 domain ( 99.6 3.4E-14 7.4E-19 122.3 13.7 105 16-124 2-116 (117)
75 smart00568 GRAM domain in gluc 99.6 3.2E-15 6.9E-20 113.0 6.2 59 170-228 1-60 (61)
76 cd04026 C2_PKC_alpha_gamma C2 99.6 2E-14 4.3E-19 126.5 11.9 105 14-118 13-126 (131)
77 cd08403 C2B_Synaptotagmin-3-5- 99.6 9.2E-15 2E-19 129.2 9.0 108 11-118 11-126 (134)
78 cd08405 C2B_Synaptotagmin-7 C2 99.6 8.5E-15 1.8E-19 129.8 8.7 108 11-118 12-127 (136)
79 cd04009 C2B_Munc13-like C2 dom 99.6 2.6E-14 5.7E-19 126.1 11.2 93 11-103 13-117 (133)
80 cd08410 C2B_Synaptotagmin-17 C 99.6 1.2E-14 2.5E-19 128.6 8.9 108 11-118 11-127 (135)
81 cd08408 C2B_Synaptotagmin-14_1 99.5 1.1E-14 2.3E-19 129.1 8.1 109 10-118 11-129 (138)
82 cd08690 C2_Freud-1 C2 domain f 99.5 2E-13 4.2E-18 122.4 15.2 111 16-126 4-137 (155)
83 cd00276 C2B_Synaptotagmin C2 d 99.5 1.6E-14 3.5E-19 127.5 7.6 108 11-118 11-126 (134)
84 cd04037 C2E_Ferlin C2 domain f 99.5 7.5E-14 1.6E-18 121.6 11.6 89 15-103 1-92 (124)
85 cd08691 C2_NEDL1-like C2 domai 99.5 2E-13 4.4E-18 120.4 14.1 99 15-115 2-122 (137)
86 cd08692 C2B_Tac2-N C2 domain s 99.5 6E-14 1.3E-18 122.2 10.3 106 9-114 9-123 (135)
87 cd04048 C2A_Copine C2 domain f 99.5 7.2E-14 1.6E-18 121.0 10.5 95 20-114 6-114 (120)
88 KOG1032 Uncharacterized conser 99.5 1.6E-14 3.4E-19 154.8 7.4 477 5-505 88-581 (590)
89 cd04021 C2_E3_ubiquitin_ligase 99.5 2.8E-13 6.1E-18 118.1 14.0 98 14-113 2-107 (125)
90 cd04013 C2_SynGAP_like C2 doma 99.5 5.3E-13 1.2E-17 118.3 14.9 99 11-114 8-113 (146)
91 cd08686 C2_ABR C2 domain in th 99.5 2.8E-13 6E-18 114.8 11.8 81 16-102 1-93 (118)
92 cd04052 C2B_Tricalbin-like C2 99.5 3E-13 6.4E-18 115.4 11.7 96 31-127 9-110 (111)
93 cd04035 C2A_Rabphilin_Doc2 C2 99.5 4.4E-13 9.5E-18 116.6 13.0 100 11-111 12-120 (123)
94 cd08409 C2B_Synaptotagmin-15 C 99.5 9E-14 1.9E-18 123.2 8.6 103 11-114 12-124 (137)
95 KOG1028 Ca2+-dependent phospho 99.5 1.1E-12 2.4E-17 136.7 17.0 154 11-175 164-332 (421)
96 cd04047 C2B_Copine C2 domain s 99.5 4.4E-13 9.5E-18 114.2 10.4 94 18-112 4-108 (110)
97 cd00275 C2_PLC_like C2 domain 99.4 2.3E-12 5E-17 112.7 14.7 102 14-117 2-113 (128)
98 PLN03200 cellulose synthase-in 99.4 3.6E-13 7.8E-18 158.7 11.4 113 11-126 1977-2100(2102)
99 PLN03008 Phospholipase D delta 99.4 1.2E-12 2.6E-17 142.0 14.0 118 13-131 13-182 (868)
100 KOG1011 Neurotransmitter relea 99.4 1.9E-12 4E-17 133.4 8.8 125 13-140 294-435 (1283)
101 PF00168 C2: C2 domain; Inter 99.3 1.9E-11 4.2E-16 98.2 9.3 81 16-96 1-85 (85)
102 cd00030 C2 C2 domain. The C2 d 99.1 4.3E-10 9.4E-15 92.3 11.1 97 16-112 1-102 (102)
103 smart00239 C2 Protein kinase C 99.1 8.4E-10 1.8E-14 91.0 11.3 87 16-102 2-92 (101)
104 KOG2059 Ras GTPase-activating 99.1 3E-10 6.4E-15 119.2 9.0 114 14-128 5-127 (800)
105 cd08374 C2F_Ferlin C2 domain s 99.0 1.4E-09 3.1E-14 94.8 10.2 87 16-102 2-121 (133)
106 KOG1028 Ca2+-dependent phospho 99.0 1.6E-09 3.4E-14 113.2 9.3 103 10-112 294-404 (421)
107 PLN02223 phosphoinositide phos 99.0 5.4E-09 1.2E-13 109.6 12.6 106 13-119 408-524 (537)
108 COG5038 Ca2+-dependent lipid-b 98.9 1.4E-08 3.1E-13 112.5 12.1 120 9-128 431-559 (1227)
109 COG5038 Ca2+-dependent lipid-b 98.8 9E-09 1.9E-13 114.1 9.7 106 11-116 1037-1146(1227)
110 PLN02952 phosphoinositide phos 98.8 2.4E-08 5.3E-13 107.0 12.7 105 13-118 469-585 (599)
111 PLN02270 phospholipase D alpha 98.8 6.1E-08 1.3E-12 105.9 13.9 116 13-129 7-151 (808)
112 KOG1328 Synaptic vesicle prote 98.8 2.4E-09 5.2E-14 112.4 1.6 116 11-126 111-301 (1103)
113 PLN02230 phosphoinositide phos 98.7 5.9E-08 1.3E-12 103.9 11.6 105 13-118 468-584 (598)
114 KOG1031 Predicted Ca2+-depende 98.7 3.2E-08 6.9E-13 101.6 8.5 113 14-126 3-136 (1169)
115 cd08689 C2_fungal_Pkc1p C2 dom 98.7 7.8E-08 1.7E-12 79.0 8.1 82 16-102 1-86 (109)
116 PLN02222 phosphoinositide phos 98.7 1.9E-07 4E-12 99.9 12.8 105 13-118 451-567 (581)
117 KOG0169 Phosphoinositide-speci 98.6 1.2E-07 2.7E-12 101.5 9.9 105 15-120 617-732 (746)
118 PLN02228 Phosphoinositide phos 98.6 3.3E-07 7.1E-12 97.8 12.1 105 13-118 430-547 (567)
119 KOG1328 Synaptic vesicle prote 98.6 4.2E-08 9.1E-13 103.3 3.9 92 11-102 944-1047(1103)
120 KOG1264 Phospholipase C [Lipid 98.5 3.7E-07 7.9E-12 97.4 10.6 134 13-150 1064-1211(1267)
121 KOG2059 Ras GTPase-activating 98.4 1.1E-06 2.4E-11 93.0 9.4 93 21-114 138-253 (800)
122 KOG4347 GTPase-activating prot 98.2 1.3E-06 2.9E-11 91.9 4.0 102 158-278 6-111 (671)
123 KOG1326 Membrane-associated pr 98.0 3.1E-06 6.7E-11 92.7 3.9 91 11-101 610-703 (1105)
124 PLN02352 phospholipase D epsil 98.0 7.9E-05 1.7E-09 81.8 12.7 111 13-131 9-135 (758)
125 KOG0905 Phosphoinositide 3-kin 97.8 2E-05 4.4E-10 87.6 4.9 102 13-114 1523-1635(1639)
126 KOG1013 Synaptic vesicle prote 97.8 2.1E-05 4.6E-10 76.7 4.2 98 13-110 232-337 (362)
127 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00014 3E-09 61.9 5.7 97 16-112 1-143 (143)
128 KOG1326 Membrane-associated pr 97.5 1.9E-05 4E-10 86.8 0.1 102 12-113 204-316 (1105)
129 KOG2060 Rab3 effector RIM1 and 97.4 9.7E-05 2.1E-09 73.4 3.0 103 12-114 267-379 (405)
130 KOG1013 Synaptic vesicle prote 97.3 3.9E-05 8.5E-10 74.9 -0.9 91 13-103 92-191 (362)
131 PF14470 bPH_3: Bacterial PH d 97.3 0.004 8.7E-08 51.0 11.3 85 171-273 1-87 (96)
132 PLN02964 phosphatidylserine de 97.2 0.00052 1.1E-08 74.9 6.4 83 13-102 53-137 (644)
133 PF14844 PH_BEACH: PH domain a 97.2 0.00048 1E-08 57.9 4.8 68 177-244 2-85 (106)
134 PF10698 DUF2505: Protein of u 97.0 0.085 1.8E-06 47.8 17.4 149 341-500 4-158 (159)
135 KOG1011 Neurotransmitter relea 96.9 0.0032 6.9E-08 66.5 8.5 99 15-114 1126-1237(1283)
136 KOG1327 Copine [Signal transdu 96.7 0.0049 1.1E-07 65.0 7.9 119 48-175 43-170 (529)
137 KOG1327 Copine [Signal transdu 96.7 0.0026 5.6E-08 67.0 5.8 82 21-103 143-235 (529)
138 cd08684 C2A_Tac2-N C2 domain f 96.6 0.0032 6.9E-08 50.0 4.1 93 17-111 2-102 (103)
139 KOG3837 Uncharacterized conser 95.6 0.016 3.4E-07 58.6 4.9 113 14-126 367-503 (523)
140 cd01201 Neurobeachin Neurobeac 95.3 0.089 1.9E-06 43.8 7.6 89 175-279 1-104 (108)
141 KOG1265 Phospholipase C [Lipid 94.5 0.097 2.1E-06 57.8 7.2 100 10-118 699-809 (1189)
142 KOG1452 Predicted Rho GTPase-a 94.2 0.11 2.5E-06 50.8 6.4 115 11-126 48-167 (442)
143 PF12416 DUF3668: Cep120 prote 94.1 0.65 1.4E-05 47.2 11.9 110 16-128 2-134 (340)
144 cd08693 C2_PI3K_class_I_beta_d 93.8 0.51 1.1E-05 43.3 9.7 86 15-102 9-120 (173)
145 cd08687 C2_PKN-like C2 domain 93.7 0.87 1.9E-05 36.7 9.4 85 33-125 7-92 (98)
146 cd08398 C2_PI3K_class_I_alpha 93.6 0.58 1.3E-05 42.3 9.5 84 15-102 9-106 (158)
147 cd08868 START_STARD1_3_like Ch 93.1 4.2 9.2E-05 38.4 15.1 147 339-498 51-206 (208)
148 cd08876 START_1 Uncharacterize 93.1 4.4 9.6E-05 37.6 15.1 134 339-485 44-182 (195)
149 smart00234 START in StAR and p 92.9 5.7 0.00012 37.1 15.8 150 339-500 48-203 (206)
150 cd08397 C2_PI3K_class_III C2 d 92.3 0.69 1.5E-05 41.9 8.0 70 33-102 28-107 (159)
151 cd08380 C2_PI3K_like C2 domain 92.0 1.3 2.7E-05 39.9 9.5 87 15-102 9-107 (156)
152 PF10358 NT-C2: N-terminal C2 91.9 5.4 0.00012 35.0 13.4 117 11-131 4-138 (143)
153 cd08871 START_STARD10-like Lip 91.9 4.3 9.2E-05 38.8 13.6 143 340-497 51-200 (222)
154 PF01852 START: START domain; 91.1 2.9 6.3E-05 39.1 11.5 146 340-500 50-203 (206)
155 cd08905 START_STARD1-like Chol 91.0 5.8 0.00013 37.6 13.3 146 340-498 53-207 (209)
156 cd04012 C2A_PI3K_class_II C2 d 90.0 1.8 3.9E-05 39.6 8.6 90 13-102 7-119 (171)
157 PF15627 CEP76-C2: CEP76 C2 do 89.9 6.1 0.00013 35.4 11.5 92 11-102 6-115 (156)
158 cd00177 START Lipid-binding ST 89.2 8.9 0.00019 35.0 12.9 122 339-471 42-167 (193)
159 cd05018 CoxG Carbon monoxide d 89.0 14 0.00031 31.8 17.2 138 341-501 6-143 (144)
160 cd08870 START_STARD2_7-like Li 88.8 11 0.00023 35.7 13.2 151 338-499 52-208 (209)
161 cd08906 START_STARD3-like Chol 87.7 20 0.00043 33.9 14.3 147 339-498 52-207 (209)
162 cd07823 SRPBCC_5 Ligand-bindin 87.0 20 0.00044 31.4 13.2 136 341-501 4-144 (146)
163 cd07821 PYR_PYL_RCAR_like Pyra 87.0 18 0.00039 30.7 14.0 135 339-501 4-139 (140)
164 PF11605 Vps36_ESCRT-II: Vacuo 86.8 1.2 2.7E-05 36.0 4.6 50 191-241 36-85 (89)
165 PF00407 Bet_v_1: Pathogenesis 86.6 23 0.0005 31.6 15.4 142 338-503 6-150 (151)
166 cd08399 C2_PI3K_class_I_gamma 86.4 7.2 0.00016 35.9 10.0 69 15-84 11-88 (178)
167 cd08869 START_RhoGAP C-termina 86.1 22 0.00049 33.2 13.6 120 339-471 47-170 (197)
168 PF00792 PI3K_C2: Phosphoinosi 85.1 8.6 0.00019 33.9 9.7 54 49-102 23-85 (142)
169 cd08904 START_STARD6-like Lipi 84.2 22 0.00047 33.6 12.4 143 339-494 49-200 (204)
170 PF08567 TFIIH_BTF_p62_N: TFII 81.9 6.7 0.00015 30.9 6.7 51 191-243 12-66 (79)
171 KOG4471 Phosphatidylinositol 3 81.9 6.5 0.00014 42.3 8.5 92 162-268 27-122 (717)
172 cd08872 START_STARD11-like Cer 81.4 17 0.00037 35.1 10.8 78 423-502 136-229 (235)
173 cd08910 START_STARD2-like Lipi 81.4 35 0.00075 32.2 12.8 142 340-494 53-201 (207)
174 PF11696 DUF3292: Protein of u 80.2 5.6 0.00012 43.5 7.6 82 180-279 520-633 (642)
175 cd08694 C2_Dock-A C2 domains f 79.7 24 0.00052 32.9 10.6 55 47-101 54-115 (196)
176 cd08908 START_STARD12-like C-t 79.7 32 0.00069 32.5 11.7 119 339-470 55-176 (204)
177 PF14429 DOCK-C2: C2 domain in 79.5 9.1 0.0002 35.4 8.0 54 49-102 62-121 (184)
178 PF06115 DUF956: Domain of unk 79.0 8.8 0.00019 32.4 6.8 55 188-243 20-76 (118)
179 PF15625 CC2D2AN-C2: CC2D2A N- 78.8 22 0.00047 32.4 10.1 68 34-102 36-106 (168)
180 cd08903 START_STARD5-like Lipi 78.7 52 0.0011 31.0 13.0 148 339-498 49-206 (208)
181 PF11687 DUF3284: Domain of un 78.5 41 0.0009 28.7 11.3 99 340-467 3-101 (120)
182 cd08695 C2_Dock-B C2 domains f 78.2 24 0.00052 32.8 10.1 56 47-102 54-114 (189)
183 smart00683 DM16 Repeats in sea 76.0 4.9 0.00011 29.2 3.9 35 191-226 19-53 (55)
184 smart00142 PI3K_C2 Phosphoinos 75.6 17 0.00036 30.0 7.7 69 16-84 13-91 (100)
185 cd08913 START_STARD14-like Lip 75.6 56 0.0012 31.7 12.3 117 339-466 84-207 (240)
186 cd08907 START_STARD8-like C-te 75.5 26 0.00057 32.9 9.6 53 420-472 124-179 (205)
187 cd08867 START_STARD4_5_6-like 73.7 63 0.0014 30.2 12.2 149 339-501 49-205 (206)
188 PF07289 DUF1448: Protein of u 73.6 52 0.0011 33.4 11.8 99 170-285 150-255 (339)
189 cd08911 START_STARD7-like Lipi 70.9 94 0.002 29.2 15.2 146 340-497 49-204 (207)
190 cd08873 START_STARD14_15-like 70.8 1E+02 0.0023 29.7 15.6 119 339-468 80-204 (235)
191 cd08874 START_STARD9-like C-te 70.7 96 0.0021 29.2 13.1 119 338-469 47-176 (205)
192 cd08909 START_STARD13-like C-t 70.3 91 0.002 29.4 12.1 120 340-471 56-178 (205)
193 cd08696 C2_Dock-C C2 domains f 68.4 21 0.00044 33.0 7.2 56 47-102 55-119 (179)
194 cd08679 C2_DOCK180_related C2 67.2 19 0.00042 33.0 6.9 53 49-101 55-115 (178)
195 PF07289 DUF1448: Protein of u 63.9 28 0.00061 35.2 7.6 81 192-285 42-129 (339)
196 PF10604 Polyketide_cyc2: Poly 63.1 91 0.002 26.2 13.5 133 340-501 6-138 (139)
197 cd08877 START_2 Uncharacterize 60.8 1E+02 0.0022 29.1 10.8 147 338-496 48-211 (215)
198 cd08697 C2_Dock-D C2 domains f 58.7 42 0.00091 31.1 7.3 55 47-101 57-123 (185)
199 PF11618 DUF3250: Protein of u 58.3 35 0.00076 28.6 6.2 85 38-124 2-99 (107)
200 COG4687 Uncharacterized protei 57.8 19 0.00041 30.1 4.3 63 189-267 21-84 (122)
201 cd08862 SRPBCC_Smu440-like Lig 57.0 1.2E+02 0.0026 25.6 12.4 58 441-502 80-137 (138)
202 KOG4269 Rac GTPase-activating 56.9 10 0.00022 42.7 3.4 100 7-112 752-866 (1112)
203 PF06713 bPH_4: Bacterial PH d 52.4 65 0.0014 24.8 6.5 40 198-241 6-50 (74)
204 cd08865 SRPBCC_10 Ligand-bindi 51.7 1.4E+02 0.0031 24.9 14.0 56 442-501 83-138 (140)
205 cd08861 OtcD1_ARO-CYC_like N-t 49.8 37 0.0008 29.2 5.4 59 440-501 82-140 (142)
206 PRK10724 hypothetical protein; 44.2 38 0.00083 30.5 4.6 106 339-468 18-123 (158)
207 KOG0694 Serine/threonine prote 43.8 7.6 0.00016 42.6 -0.0 90 33-124 26-119 (694)
208 PF07162 B9-C2: Ciliary basal 43.3 2.5E+02 0.0055 25.4 10.3 79 16-100 4-102 (168)
209 PF04707 PRELI: PRELI-like fam 42.1 1.5E+02 0.0033 26.5 8.2 90 408-503 61-153 (157)
210 PTZ00447 apical membrane antig 41.0 3.6E+02 0.0079 27.5 11.0 98 16-120 60-163 (508)
211 PF03703 bPH_2: Bacterial PH d 39.6 1.4E+02 0.0031 22.6 6.8 48 195-243 6-57 (80)
212 cd07814 SRPBCC_CalC_Aha1-like 37.6 2.4E+02 0.0053 23.5 13.4 134 341-502 5-138 (139)
213 PF04283 CheF-arch: Chemotaxis 37.4 41 0.00088 32.2 3.8 35 190-228 25-59 (221)
214 cd07812 SRPBCC START/RHO_alpha 37.3 2.2E+02 0.0048 23.0 13.3 31 442-472 84-114 (141)
215 cd07818 SRPBCC_1 Ligand-bindin 36.7 70 0.0015 27.7 5.1 59 442-502 91-149 (150)
216 cd08900 SRPBCC_CalC_Aha1-like_ 35.9 2.8E+02 0.0061 23.8 16.4 141 338-502 2-142 (143)
217 cd07817 SRPBCC_8 Ligand-bindin 35.8 2.6E+02 0.0057 23.4 12.4 28 443-470 80-107 (139)
218 cd07826 SRPBCC_CalC_Aha1-like_ 33.5 3.1E+02 0.0068 23.6 13.6 139 338-502 2-141 (142)
219 PF06017 Myosin_TH1: Myosin ta 33.2 3.4E+02 0.0075 25.2 9.4 71 195-283 70-145 (199)
220 COG2867 Oligoketide cyclase/li 32.9 44 0.00094 29.6 2.9 28 443-470 86-113 (146)
221 KOG3543 Ca2+-dependent activat 32.5 2.8E+02 0.0061 30.5 9.3 96 15-113 342-440 (1218)
222 cd08866 SRPBCC_11 Ligand-bindi 31.4 3.3E+02 0.007 23.1 13.0 28 443-470 88-116 (144)
223 cd07813 COQ10p_like Coenzyme Q 31.3 87 0.0019 26.8 4.7 28 443-470 82-109 (138)
224 cd08914 START_STARD15-like Lip 30.3 5.1E+02 0.011 25.0 14.1 119 338-468 80-205 (236)
225 PF08512 Rtt106: Histone chape 28.2 3E+02 0.0066 22.2 7.1 62 191-269 11-75 (95)
226 PF06240 COXG: Carbon monoxide 24.7 4.6E+02 0.0099 22.6 12.6 134 342-500 3-138 (140)
227 PF03517 Voldacs: Regulator of 23.9 1.1E+02 0.0025 26.6 4.1 48 193-242 1-52 (135)
228 KOG1329 Phospholipase D1 [Lipi 23.8 80 0.0017 36.1 3.7 80 35-114 138-221 (887)
229 cd01244 PH_RasGAP_CG9209 RAS_G 22.8 4.3E+02 0.0092 21.6 7.1 47 195-242 26-74 (98)
230 KOG3294 WW domain binding prot 22.2 64 0.0014 30.9 2.2 48 191-238 47-95 (261)
231 cd07822 SRPBCC_4 Ligand-bindin 21.6 4.7E+02 0.01 21.6 10.2 56 442-501 85-140 (141)
232 cd08860 TcmN_ARO-CYC_like N-te 21.1 1.9E+02 0.0041 25.4 5.0 34 432-469 80-113 (146)
233 KOG0526 Nucleosome-binding fac 20.8 3.4E+02 0.0074 29.3 7.3 81 183-283 10-91 (615)
234 PF04386 SspB: Stringent starv 20.4 1.6E+02 0.0034 26.4 4.3 36 193-228 67-102 (155)
235 cd08899 SRPBCC_CalC_Aha1-like_ 20.2 5.9E+02 0.013 22.3 10.8 128 337-505 12-139 (157)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=9e-38 Score=332.21 Aligned_cols=321 Identities=21% Similarity=0.319 Sum_probs=244.4
Q ss_pred cccccc--ccCcccceEEeeeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecC-cEEEE
Q 009822 164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII 240 (524)
Q Consensus 164 ~f~~~F--~lp~~e~l~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~-~i~i~ 240 (524)
.|...+ ++|+++.|+.+|+|+|+|.+++|||||++++||||||++|||+++++||+.+|+.|+|+++++++| +|+|.
T Consensus 108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~ 187 (590)
T KOG1032|consen 108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT 187 (590)
T ss_pred hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence 444444 388999999999999999999999999999999999999999999999999999999999998776 99999
Q ss_pred EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccchh-hHHhhhhhhccccCCC-C----CCC--Ccc
Q 009822 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLE-AEKKEKAESALRAHSS-S----IGG--SRR 312 (524)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~-~e~~~~~~s~~~~~s~-~----~~~--s~~ 312 (524)
+ ++.+|+|++|++||.+|.++..+.+..-.... ......+.+....+.. . .+. ++.
T Consensus 188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s 251 (590)
T KOG1032|consen 188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPS 251 (590)
T ss_pred c----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCcc
Confidence 6 45699999999999999977555444211100 0000000000000000 0 000 000
Q ss_pred cccccccccCCC----CCCCCCccccccceeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCC
Q 009822 313 QAKIVEETVTKP----EKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDG 388 (524)
Q Consensus 313 ~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~ 388 (524)
+.....++ +.. .+.+..+++. +-.+.+..|.+++..+|.++|+ +..|+..+++.++..++...+|..... +.
T Consensus 252 ~~~~s~~~-~~~e~~~~~~~~~~~~~-~~v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~-~~ 327 (590)
T KOG1032|consen 252 ALQNSFDS-PKEEELEHDFSCSLSRL-FGVLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRS-GI 327 (590)
T ss_pred ccccccCC-Ccccccccccccccccc-ccccccccccccccccceeecc-CcceeeeccccccccccccccccCCCc-cc
Confidence 00000000 000 0111122222 2357789999999999999999 678888899999999999999998765 67
Q ss_pred cEEEEEEEeeccCCCCCceeeEeEEEEEEecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEE
Q 009822 389 QVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHF 468 (524)
Q Consensus 389 ~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f 468 (524)
..|.++|++++..++|||++.|..+|.+.+.....|+.|..++.+++|||++.|.|.+||+|.|.+.+.|++.++++|.|
T Consensus 328 ~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~~V~~ 407 (590)
T KOG1032|consen 328 LLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVSTSVEW 407 (590)
T ss_pred eeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecceeEEEe
Confidence 89999999999999999999999999999877667899999999999999999999999999999999999999999999
Q ss_pred eeeceeeeeeeccH--HHHHHHHHHHHHHHHHHHHhhc
Q 009822 469 KKWCVIQFKIKTGA--VNKYKKEVELMLETARSYIKIC 504 (524)
Q Consensus 469 ~K~t~~K~~Ie~~~--~~~~~~~~~~~~~~~~~~l~~~ 504 (524)
.|.+|.+.+++..+ .+.+-+.++.++...++..+..
T Consensus 408 ~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~ 445 (590)
T KOG1032|consen 408 TKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQ 445 (590)
T ss_pred ccCchhhccccccccchhhHHHHHHHHHhccHHHHHhh
Confidence 99999888888765 5566666777776555544443
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=5.1e-20 Score=158.72 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=97.9
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecC-CCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i 92 (524)
|+|.|+|++|++|+..+ .|++||||++.+++.+++|+++.+ +.||.|||+|.|.+......|.|+|||+|.+++|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 78999999999998877 799999999999999999999876 7999999999999976667899999999999999999
Q ss_pred EEEEEEccc-C--CCcccEEEEecC-----CCCeeEEEEEE
Q 009822 93 GSVIVTVES-E--GQTGAVWYTLDS-----PSGQVCLHIKT 125 (524)
Q Consensus 93 G~~~i~l~~-~--~~~~~~w~~L~~-----~~G~i~~~l~~ 125 (524)
|.+.+++.. + +...+.|++|.+ +.|+|+++|++
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999963 4 555789999976 34888887753
No 3
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.79 E-value=1.8e-18 Score=149.04 Aligned_cols=111 Identities=24% Similarity=0.363 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG 93 (524)
+|+|+|++|++|+..+..|.+||||++++++...+|+++++++||.|||+|.|.+.+. ...|.|+|||++..+++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999999999999999999999999999998764 678999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEecCCCCeeEEEEEE
Q 009822 94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKT 125 (524)
Q Consensus 94 ~~~i~l~~~--~~~~~~w~~L~~~~G~i~~~l~~ 125 (524)
.+.++|+++ +.....|++|.+..|++++.+.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEe
Confidence 999999987 55678999999878998777654
No 4
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=5.8e-19 Score=155.48 Aligned_cols=111 Identities=24% Similarity=0.408 Sum_probs=97.7
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i 92 (524)
-|.|.|+|++|.||..+|..+++||||++.+++++.+|+++.+++||+|||+|+|.+.++...|.++|||+|.++.||||
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m 84 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM 84 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence 48999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcccCCCcccEEEEec--CCCCeeEEEEE
Q 009822 93 GSVIVTVESEGQTGAVWYTLD--SPSGQVCLHIK 124 (524)
Q Consensus 93 G~~~i~l~~~~~~~~~w~~L~--~~~G~i~~~l~ 124 (524)
|.|+|+|.++......|+ |. ...|....++.
T Consensus 85 G~A~I~l~p~~~~~~~~~-l~~~~~~gt~~~~v~ 117 (168)
T KOG1030|consen 85 GEATIPLKPLLEAQKMDY-LKLELLTGTAIGKVL 117 (168)
T ss_pred ceeeeccHHHHHHhhhhc-cccccCCCcEeeEEE
Confidence 999999999855555565 33 23455444333
No 5
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=2.3e-18 Score=149.43 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=91.3
Q ss_pred EEEEEEEEeec---CcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009822 15 LIKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW---- 87 (524)
Q Consensus 15 ~L~V~vi~A~~---L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~---- 87 (524)
.|.|+|++|+| |+.+|..|.+||||+++++.++.+|+++.+++||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 88999999999999999999999999999999999999999999877778999999999874
Q ss_pred --CCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 88 --~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
+|++||++.++|..+ +.....||+|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 899999999999988 445678999974
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=2.4e-18 Score=150.44 Aligned_cols=100 Identities=25% Similarity=0.488 Sum_probs=90.1
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS 89 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~------~~~~L~v~v~d~d~~~~d 89 (524)
+.|+|++|+||+.++..|.+||||++.++..+.+|+++++++||.|||+|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999999999999999999999999999999999999999999865 356799999999999899
Q ss_pred ceeEEEEEEcccCC----CcccEEEEecCC
Q 009822 90 TVLGSVIVTVESEG----QTGAVWYTLDSP 115 (524)
Q Consensus 90 ~~iG~~~i~l~~~~----~~~~~w~~L~~~ 115 (524)
++||++.++|.++. .....||+|.++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESK 110 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCC
Confidence 99999999999863 346799999753
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=6.8e-18 Score=146.52 Aligned_cols=112 Identities=22% Similarity=0.460 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG 93 (524)
+|+|+|++|++|+..+..|.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4789999999999999999999999999986 567999999999999999999999876788999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEecCC-----CCeeEEEEEEE
Q 009822 94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI 126 (524)
Q Consensus 94 ~~~i~l~~~--~~~~~~w~~L~~~-----~G~i~~~l~~~ 126 (524)
.+.+++.++ +.....|++|.++ .|.|.+.+++.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999997 5667889999653 36666666543
No 8
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=2.1e-17 Score=142.98 Aligned_cols=111 Identities=23% Similarity=0.465 Sum_probs=98.6
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG 93 (524)
|.|.|+|++|++|+..+..+.+||||+++++....+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 67999999999999999899999999999998889999999999999999999999877788999999999888999999
Q ss_pred EEEEEcccCCCcccEEEEecCC------CCeeEEEEE
Q 009822 94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (524)
Q Consensus 94 ~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~ 124 (524)
++.+++.++......|+.|..+ .|+|.+++.
T Consensus 81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~ 117 (119)
T cd08377 81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMD 117 (119)
T ss_pred EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEE
Confidence 9999999986667899999653 355555554
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.75 E-value=1.2e-17 Score=144.34 Aligned_cols=110 Identities=24% Similarity=0.398 Sum_probs=94.1
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeec-CCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~ 91 (524)
|.|.|+|++|++|+..+..+.+||||++.+++...+|+++. +++||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 67999999999999999999999999999998888999875 47999999999999875 3567999999999876 899
Q ss_pred eEEEEEEcccC--CCcccEEEEecCC---CCeeEEEEE
Q 009822 92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK 124 (524)
Q Consensus 92 iG~~~i~l~~~--~~~~~~w~~L~~~---~G~i~~~l~ 124 (524)
||++.+++.++ +.....|++|..+ .|+|.+++.
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~ 117 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence 99999999987 4456899999753 356555554
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.5e-17 Score=145.68 Aligned_cols=111 Identities=21% Similarity=0.370 Sum_probs=95.0
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS 89 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~v~d~d~~~-~d 89 (524)
.|.|+|++|++|++.+..|.+||||++.+++..++|+++.++.||.|||.|.|.+... ...|.|+|||++.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3789999999999999889999999999999999999999999999999999998643 256999999999887 89
Q ss_pred ceeEEEEEEcccC---CCcccEEEEecCC------CCeeEEEEEE
Q 009822 90 TVLGSVIVTVESE---GQTGAVWYTLDSP------SGQVCLHIKT 125 (524)
Q Consensus 90 ~~iG~~~i~l~~~---~~~~~~w~~L~~~------~G~i~~~l~~ 125 (524)
++||++.++++++ +.....||+|..+ .|++.+++.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 9999999999987 3446799999753 3665555543
No 11
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.8e-17 Score=145.28 Aligned_cols=112 Identities=24% Similarity=0.427 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCcCCCC--CCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 009822 14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~--~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~ 90 (524)
|+|.|+|++|++|+..+. .+.+||||.+.++....+|++++++.+|.|||+|.|.+.. ....|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999988 8899999999999999999999999999999999999876 4678999999999988999
Q ss_pred eeEEEEEEcccCC-----CcccEEEEecCC--------CCeeEEEEEE
Q 009822 91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT 125 (524)
Q Consensus 91 ~iG~~~i~l~~~~-----~~~~~w~~L~~~--------~G~i~~~l~~ 125 (524)
+||++.+++.++. .....||+|.++ .|+|.+++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999872 335789999764 4666666543
No 12
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=2.5e-17 Score=142.82 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=94.0
Q ss_pred EEEEEEEeecCcCCC-CCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822 16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 16 L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG 93 (524)
|.|+|++|+||++.+ ..|.+||||.+.++.. ..+|+++++++||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999874 4578999999999765 46899999999999999999999876678999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEecCC------CCeeEEEEE
Q 009822 94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK 124 (524)
Q Consensus 94 ~~~i~l~~~--~~~~~~w~~L~~~------~G~i~~~l~ 124 (524)
.+.++++++ +...+.||+|++. .|+|++.++
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999988 4456789999863 477766654
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=1.1e-17 Score=142.08 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=86.7
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d 82 (524)
.+..+.|+|+|++|++|+ ..|.+||||++++.. .+.+|++.++++||.|||+|.|++.. ....|.|+|||
T Consensus 10 ~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 10 DKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 466799999999999998 246799999999853 46689999999999999999999864 35569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEe
Q 009822 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L 112 (524)
+|+++++++||++.++++++ ..+..+|..|
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999999976 6777888765
No 14
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=5e-17 Score=143.69 Aligned_cols=115 Identities=23% Similarity=0.407 Sum_probs=99.0
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS 89 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d 89 (524)
...|.|.|+|++|++|++.+..|.+||||++.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++..++|
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 45689999999999999999999999999999999999999999999999999999998754 45699999999999999
Q ss_pred ceeEEEEEEcccCC-------CcccEEEEecC-CCCeeEEEEEE
Q 009822 90 TVLGSVIVTVESEG-------QTGAVWYTLDS-PSGQVCLHIKT 125 (524)
Q Consensus 90 ~~iG~~~i~l~~~~-------~~~~~w~~L~~-~~G~i~~~l~~ 125 (524)
++||++.+++.++. .....|..|.. ..|+|++++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 99999999998772 12235666654 45999888765
No 15
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=4.9e-17 Score=146.00 Aligned_cols=112 Identities=17% Similarity=0.339 Sum_probs=95.9
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecC-CCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL 92 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~i 92 (524)
.|.|+|++|++|++++..|.+||||++.++++..+|++..+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37899999999999999999999999999999999999976 69999999999998654 45799999999988889999
Q ss_pred EEEEEEcccCC------CcccEEEEecCCC------------CeeEEEEEEE
Q 009822 93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI 126 (524)
Q Consensus 93 G~~~i~l~~~~------~~~~~w~~L~~~~------------G~i~~~l~~~ 126 (524)
|++.++|..+. ....+||+|.... |+|++.|.+.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 99999999872 3358999997643 5666666544
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=6.7e-17 Score=141.30 Aligned_cols=109 Identities=23% Similarity=0.420 Sum_probs=92.9
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECC--eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG 93 (524)
|.|+|++|+||+. ..|.+||||++.++. ...+|+++++++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 678999999999973 567999999999999999999999765678999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEEE
Q 009822 94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI 126 (524)
Q Consensus 94 ~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~~ 126 (524)
++.+++.++ ......|++|.++ .|++.+++.+.
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 999999987 4556789999754 35555555543
No 17
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=6.8e-17 Score=140.09 Aligned_cols=111 Identities=24% Similarity=0.465 Sum_probs=97.5
Q ss_pred eEEEEEEEEeecCcCCCC------CCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCC
Q 009822 14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII 86 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~------~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~ 86 (524)
|+|.|+|++|++|+..+. .|.+||||++++++...+|++++++.+|.|+|.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998875 3689999999999988999999999999999999999864 467799999999987
Q ss_pred CCCceeEEEEEEcccC--CCcccEEEEecC-CCCeeEEEEEE
Q 009822 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT 125 (524)
Q Consensus 87 ~~d~~iG~~~i~l~~~--~~~~~~w~~L~~-~~G~i~~~l~~ 125 (524)
++++||.+.+++.++ ......|++|.+ ..|++++++.|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999987 444679999986 57998887754
No 18
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=4e-17 Score=141.69 Aligned_cols=99 Identities=22% Similarity=0.350 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEe-c--C-CCcEEEEEEEEc
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-D--E-LPVQIIVTIYDW 83 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v-~--~-~~~~L~v~v~d~ 83 (524)
.+.|.|+|++|++|++++ .+.+||||++++. ..+.+|++++++.||.|||+|.|.+ . + ....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 8999999999985 3467899999999999999999987 2 1 346799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEe
Q 009822 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L 112 (524)
+..+++++||++.++|.++ ......||+|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999998 4446889987
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=8e-17 Score=139.74 Aligned_cols=109 Identities=25% Similarity=0.437 Sum_probs=94.1
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS 94 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~ 94 (524)
|.|+|++|++|++++..|.+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999999999999999997654 59999999999999999999987766889999999999999999999
Q ss_pred EEEEcccCC---CcccEEEEecCC------CCeeEEEEE
Q 009822 95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK 124 (524)
Q Consensus 95 ~~i~l~~~~---~~~~~w~~L~~~------~G~i~~~l~ 124 (524)
+.++++++. ...+.|++|.+. .|+|++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999988772 236799999752 466655543
No 20
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=7.8e-17 Score=138.23 Aligned_cols=104 Identities=22% Similarity=0.415 Sum_probs=89.3
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG 93 (524)
+.|.|+|++|++|++++ ..||||++++++.+.+|++.++ .||.|||+|.|.+.+....|.|+|||+|.+ .|++||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 57999999999997654 5689999999999999999987 499999999999988778899999999965 899999
Q ss_pred EEEEEcccC----CCcccEEEEecC----CCCeeEEE
Q 009822 94 SVIVTVESE----GQTGAVWYTLDS----PSGQVCLH 122 (524)
Q Consensus 94 ~~~i~l~~~----~~~~~~w~~L~~----~~G~i~~~ 122 (524)
++.|+|.++ .....+||+|.+ +.|++.++
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~ 113 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT 113 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence 999999987 233479999986 45766544
No 21
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.8e-16 Score=138.51 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=91.8
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i 92 (524)
.++|+|+|++|++|...+..|.+||||.+.+++...+|++++++.||.|||.|.|.+......|.|+|||++.. +|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 47899999999999999999999999999999999999999999999999999999887778899999999876 58999
Q ss_pred EEEEEEcccCCCcccEEEEec
Q 009822 93 GSVIVTVESEGQTGAVWYTLD 113 (524)
Q Consensus 93 G~~~i~l~~~~~~~~~w~~L~ 113 (524)
|.+.+++.+.......|++|.
T Consensus 81 G~~~~~l~~~~~~~~~~~~l~ 101 (126)
T cd04046 81 GQATLSADPNDSQTLRTLPLR 101 (126)
T ss_pred EEEEEecccCCCcCceEEEcc
Confidence 999999998866677889985
No 22
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=1.4e-16 Score=138.69 Aligned_cols=99 Identities=29% Similarity=0.592 Sum_probs=90.2
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS 94 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG~ 94 (524)
|+|+|++|++|+.++..+.+||||.+++++...+|+++++++||.|||+|.|.+... ...|.|+|||++..+++++||+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 789999999999999889999999999998889999999999999999999998764 4679999999999999999999
Q ss_pred EEEEcccC--CCcccEEEEecC
Q 009822 95 VIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 95 ~~i~l~~~--~~~~~~w~~L~~ 114 (524)
+.++++++ ......|+.|.+
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 82 VVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEHHHcccCCCCCCEEECCC
Confidence 99999988 344688999976
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.72 E-value=9.2e-17 Score=138.96 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=95.3
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~ 90 (524)
.|.|+|++|++|+..+..|.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 378999999999999988999999999985 3557899999999999999999998643 45699999999988 899
Q ss_pred eeEEEEEEcccC--CCcccEEEEecCC-CCeeEEEEEEE
Q 009822 91 VLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI 126 (524)
Q Consensus 91 ~iG~~~i~l~~~--~~~~~~w~~L~~~-~G~i~~~l~~~ 126 (524)
+||++.++++++ +.....|++|.++ .|++.+++.+.
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 999999999987 4567889999764 58877777543
No 24
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=1e-16 Score=142.43 Aligned_cols=104 Identities=16% Similarity=0.292 Sum_probs=90.1
Q ss_pred ceEEEEEEEEeecCcCCC-CCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEE-EcCC
Q 009822 13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI 85 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~-d~d~ 85 (524)
.+.|.|+|++|+||++.+ ..|.+||||++++.. .+.+|+++++++||.|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 478999999999999874 578899999999842 356899999999999999999999855677999999 6888
Q ss_pred CCCCceeEEEEEEcccC--CCcccEEEEecCCC
Q 009822 86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116 (524)
Q Consensus 86 ~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~ 116 (524)
.+++++||++.|+|+.+ +.....||+|.++.
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 88899999999999988 45567999998643
No 25
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.5e-16 Score=139.32 Aligned_cols=111 Identities=29% Similarity=0.525 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCC--------
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-------- 86 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~-------- 86 (524)
.|+|+|++|++|+..+..|.+||||++.++....+|+++.++++|.|||+|.|.+..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999999999999999999998888899999999999999999999876667899999999853
Q ss_pred ---CCCceeEEEEEEcccCCCcccEEEEecCCC--CeeEEEEEE
Q 009822 87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPS--GQVCLHIKT 125 (524)
Q Consensus 87 ---~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~--G~i~~~l~~ 125 (524)
+++++||++.+++.++......||.|.++. +.++++|.+
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEE
Confidence 468999999999999877778999998744 335555543
No 26
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=1.2e-16 Score=137.41 Aligned_cols=99 Identities=15% Similarity=0.304 Sum_probs=84.4
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----C--eEEeeeeecCCCCCccccEEEEEecCC----CcEEEEEEEEc
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~--~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~v~d~ 83 (524)
.|+|+|++|++|+..+ .|.+||||++++. . ++++|+++.+++||.|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 4999999999972 2 345799999999999999999998632 23499999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
+..+++++||++.+++..+ +.....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9888899999999999998 455678999965
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=1.4e-16 Score=138.04 Aligned_cols=105 Identities=23% Similarity=0.430 Sum_probs=89.8
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS 94 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~iG~ 94 (524)
|.|+|++|++|+.+ .+||||.+.+++...+|++++++.||.|||+|.|.+.. ....|.++|||++.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 78999999999988999999999999999999999876 456799999999977 7899999
Q ss_pred EEEEcccCCC-------cccEEEEecCCC-----CeeEEEEEE
Q 009822 95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT 125 (524)
Q Consensus 95 ~~i~l~~~~~-------~~~~w~~L~~~~-----G~i~~~l~~ 125 (524)
+.++++++.. ....||+|.+.. |+|+++|.+
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999998722 246899997644 666666543
No 28
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.70 E-value=1.2e-16 Score=139.38 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=89.0
Q ss_pred CCceEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~ 81 (524)
...+.|.|+|++|+||++++.. |.+||||++++. ..+.+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 4457899999999999999975 899999999984 234689999999999999999999853 2457999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~ 113 (524)
|++..+++++||++.++|.++ ......||+|+
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 999999999999999999987 44567899984
No 29
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=2.1e-16 Score=139.54 Aligned_cols=100 Identities=23% Similarity=0.391 Sum_probs=88.1
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-------EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~ 87 (524)
+|+|+|++|++|+.++..|.+||||++.+.+. ..+|++++++.||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 48999999999999998999999999998654 46899999999999999999998766678999999999999
Q ss_pred CCceeEEEEEEcccCCC--------cccEEEEecC
Q 009822 88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDS 114 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~~~--------~~~~w~~L~~ 114 (524)
++++||++.++++++.. ....||+|.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~ 115 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence 99999999999998721 2358999985
No 30
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.70 E-value=2.3e-16 Score=137.59 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=88.8
Q ss_pred CCceEEEEEEEEeecCcCCCC-CCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~-~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~ 81 (524)
+..+.|.|+|++|+||++.+. .|.+||||++++. ..+.+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 456889999999999998875 5789999999984 234689999999999999999999854 2456999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~ 113 (524)
|++..+++++||++.++|..+ ......|++|.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999999999999999988 55568999984
No 31
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.69 E-value=5.1e-16 Score=140.82 Aligned_cols=112 Identities=20% Similarity=0.383 Sum_probs=94.8
Q ss_pred ceEEEEEEEEeecCcCCC------------------------------CCCCCCcEEEEEECCeE-EeeeeecCCCCCcc
Q 009822 13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW 61 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W 61 (524)
.|+|.|+|++|++|+.+| ..|++||||.+.+++.. .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 488999999999999987 35678999999998755 59999999999999
Q ss_pred ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEE
Q 009822 62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT 125 (524)
Q Consensus 62 ~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~ 125 (524)
||+|.|.+......|.|.|||++..+ +++||.+.++++++ +...+.|++|.+. .|+|++.+++
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998777778999999999875 57999999999987 5567899999642 3566666654
No 32
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.69 E-value=3.3e-16 Score=136.51 Aligned_cols=103 Identities=22% Similarity=0.418 Sum_probs=91.1
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEcC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD 84 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~d 84 (524)
+..+.|.|+|++|++|++++..|.+||||++.+. ....+|++++++.||.|+|+|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 4568999999999999999999999999999983 3457899999999999999999997642 457999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (524)
Q Consensus 85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~ 113 (524)
.++++++||++.++++++ ....+.||+|+
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999998 55678999986
No 33
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.69 E-value=2.4e-16 Score=137.81 Aligned_cols=103 Identities=18% Similarity=0.382 Sum_probs=88.6
Q ss_pred CCceEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~ 81 (524)
...+.|.|+|++|+||++++.. |.+||||++++. ..+++|+++++++||.|||+|.|.+.. ....|.+.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 4567999999999999999875 999999999984 235689999999999999999999854 2467999999
Q ss_pred EcCCCCCCceeEEEEEEcccCC-----CcccEEEEec
Q 009822 82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD 113 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~~-----~~~~~w~~L~ 113 (524)
|++.++++++||++.|+|+++. .....||+|.
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9999999999999999999872 3567899973
No 34
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=8.1e-16 Score=136.08 Aligned_cols=113 Identities=19% Similarity=0.416 Sum_probs=94.0
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC----------CCcEEEEEEEEc
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW 83 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~----------~~~~L~v~v~d~ 83 (524)
+.|+|+|++|++|++++..|.+||||++.+++...+|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999997432 124699999999
Q ss_pred CCCCCCceeEEEEE-EcccC-----CCcccEEEEecC---CCCeeEEEEEEE
Q 009822 84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTI 126 (524)
Q Consensus 84 d~~~~d~~iG~~~i-~l~~~-----~~~~~~w~~L~~---~~G~i~~~l~~~ 126 (524)
+..++|++||++.+ ++..+ .....+|++|.. ..|+|.+++.+.
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~ 132 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELI 132 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEE
Confidence 99999999999987 33333 245679999974 247777766654
No 35
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.69 E-value=1.1e-15 Score=133.51 Aligned_cols=110 Identities=22% Similarity=0.343 Sum_probs=91.4
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCC-cEEEEEEEEcCCCCCCce
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV 91 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v~d~d~~~~d~~ 91 (524)
..|.|+|++|+||++. +.+||||.+.+++.. .+|++ +++.||.|||+|.|.+.... ..+.|.|||++..+++++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 4699999999999875 478999999998754 57876 46899999999999865433 568999999999999999
Q ss_pred eEEEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEEEe
Q 009822 92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (524)
Q Consensus 92 iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~~~ 127 (524)
||.+.++|+.+ +...+.|++|.+. .|+|++.+++..
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999987 4556799999753 288888887753
No 36
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=3.4e-16 Score=136.59 Aligned_cols=103 Identities=21% Similarity=0.376 Sum_probs=89.4
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~ 81 (524)
+..+.|.|+|++|++|+..+..+.+||||++.+.. ...+|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 45688999999999999999889999999999853 45689999999999999999998533 2467999999
Q ss_pred EcCCCCCCceeEEEEEEcccC-CCcccEEEEec
Q 009822 82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L~ 113 (524)
|++..+++++||++.++|.+. ......||+|+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 999998999999999999985 44557899985
No 37
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.68 E-value=3.7e-16 Score=132.02 Aligned_cols=97 Identities=26% Similarity=0.332 Sum_probs=87.0
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG 93 (524)
+|.|+|++|++|+..+..+.+||||++++++...+|+++.++.||.|||.|.|.+..+ ...|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 4889999999999998889999999999999999999999999999999999999763 5679999999886 78999
Q ss_pred EEEEEcccC--C--CcccEEEEecC
Q 009822 94 SVIVTVESE--G--QTGAVWYTLDS 114 (524)
Q Consensus 94 ~~~i~l~~~--~--~~~~~w~~L~~ 114 (524)
++.++|.++ . ...+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 999999987 2 24679999975
No 38
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=4.1e-16 Score=139.38 Aligned_cols=99 Identities=21% Similarity=0.390 Sum_probs=85.3
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEec---------------CC-C
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------EL-P 73 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~---------------~~-~ 73 (524)
.|.|+|++|++|+. ..|.+||||++++.. ..++|+++++++||.|||+|.|.+. +. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999988 568999999999865 5678999999999999999999984 11 2
Q ss_pred cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEecCC
Q 009822 74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP 115 (524)
Q Consensus 74 ~~L~v~v~d~d~~~~d~~iG~~~i~l~~~~---~~~~~w~~L~~~ 115 (524)
..|.|.|||++..++++|||++.|++..+. .....||+|.++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 459999999999889999999999999983 357899999864
No 39
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=4.2e-16 Score=135.19 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=89.3
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC------CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~------~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v 80 (524)
.+..+.|.|+|++|+||++.+..|.+||||++++- ..+.+|+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 35668899999999999999888999999999973 236789999999999999999999864 356799999
Q ss_pred EEcCCCCCCceeEEEEEEcccC---CCcccEEEEe
Q 009822 81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL 112 (524)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~~---~~~~~~w~~L 112 (524)
||++..+++++||.+.|+|+++ ......||+|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999999999999987 2346789876
No 40
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.67 E-value=6.4e-16 Score=134.69 Aligned_cols=103 Identities=23% Similarity=0.412 Sum_probs=90.5
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD 84 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d 84 (524)
...+.|.|+|++|+||++++..|.+||||++.+. ....+|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 3457899999999999999999999999999984 245689999999999999999999754 2457999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (524)
Q Consensus 85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~ 113 (524)
.++++++||++.++++++ +....+|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999999999999999987 56678999985
No 41
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.67 E-value=1.4e-15 Score=132.85 Aligned_cols=112 Identities=25% Similarity=0.479 Sum_probs=95.8
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECC---eEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS 89 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d 89 (524)
+.|+|+|++|++|+..+..+.+||||.+.+.. ...+|+++++++||.|||+|.|.+... ...|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999999999999998764 356899999999999999999998763 56799999999998899
Q ss_pred ceeEEEEEEcccC-----CCcccEEEEecCCCCeeEEEEEEE
Q 009822 90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTI 126 (524)
Q Consensus 90 ~~iG~~~i~l~~~-----~~~~~~w~~L~~~~G~i~~~l~~~ 126 (524)
++||++.++|++. +.....|++|.+ .|++++.+.+.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~ 121 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSME 121 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEe
Confidence 9999999999864 224578999975 78887776654
No 42
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=2.8e-16 Score=134.17 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=86.4
Q ss_pred eEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEEEcCC
Q 009822 14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI 85 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~d~d~ 85 (524)
|+|.|+|++|++|+..+.. |.+||||++.+. ....+|+++++++||.|||.|.|.+.. ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 899999999984 345789999999999999999998754 24679999999999
Q ss_pred CCCCceeEEEEEEcccCCCcccEEEEec
Q 009822 86 IWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (524)
Q Consensus 86 ~~~d~~iG~~~i~l~~~~~~~~~w~~L~ 113 (524)
.++|++||++.+++.++. ....|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI-EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence 999999999999999985 345688775
No 43
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.67 E-value=1.8e-15 Score=133.42 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=97.4
Q ss_pred ceEEEEEEEEeecCcCCCCC----------CCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEE
Q 009822 13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~----------g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~ 81 (524)
.|.|.|+|++|++|++.+.. |.+||||++.+++.. .+|++++++.+|.|||+|.|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 47899999999999988863 679999999998765 588999999999999999999973 678999999
Q ss_pred EcCCCCCCceeEEEEEEcccCC----CcccEEEEecCCCCeeEEEEEEE
Q 009822 82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTI 126 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~~----~~~~~w~~L~~~~G~i~~~l~~~ 126 (524)
|++..+++++||.+.++|+++. ...+.|++|. +.|++++.+.+.
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-~~G~l~l~~~~~ 129 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-PQGKLHVKIELK 129 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-CCcEEEEEEEEe
Confidence 9998889999999999999872 3468999998 479998888765
No 44
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=4.7e-16 Score=132.56 Aligned_cols=99 Identities=21% Similarity=0.387 Sum_probs=87.7
Q ss_pred EEEEEEEeecCcCCCC-CCCCCcEEEEEECCeEEeeeeecCCCCCcc-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 009822 16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST 90 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~-~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W-~e~f~f~v~~~---~~~L~v~v~d~d~~~~d~ 90 (524)
|.|+|++|++|+.++. .|.+||||++++++...+|+++++++||.| ||+|.|.+... ...|.|+|||++..++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999999884 788999999999998899999999999999 99999998652 367999999999999999
Q ss_pred eeEEEEEEcccCCC-----cccEEEEecC
Q 009822 91 VLGSVIVTVESEGQ-----TGAVWYTLDS 114 (524)
Q Consensus 91 ~iG~~~i~l~~~~~-----~~~~w~~L~~ 114 (524)
+||++.+++.++.. ....||+|..
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999998822 3678999853
No 45
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.66 E-value=2e-15 Score=131.28 Aligned_cols=110 Identities=24% Similarity=0.357 Sum_probs=92.8
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEEC-CeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL 92 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~--d~~i 92 (524)
|+|+|++|++|+.++..|.+||||++.++ ....+|+++++++||.|||+|.|.+.. ...|.|+|||++..++ +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999999999999999999996 667899999999999999999999975 7789999999998875 5799
Q ss_pred EEEEEEcccC---CCcccEEEEecCC----CCeeEEEEEEE
Q 009822 93 GSVIVTVESE---GQTGAVWYTLDSP----SGQVCLHIKTI 126 (524)
Q Consensus 93 G~~~i~l~~~---~~~~~~w~~L~~~----~G~i~~~l~~~ 126 (524)
|++.+++.++ ......|++|... .|.+.+++.+.
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~ 121 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVS 121 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEE
Confidence 9999999997 2234679999542 35556666543
No 46
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=8.1e-16 Score=130.37 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=80.1
Q ss_pred eEEEEEEEEeecCcCCCCC----CCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC--CCcEEEEEEEEcCCCC
Q 009822 14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW 87 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~----g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~v~d~d~~~ 87 (524)
|+|.|+|++|++|++.+.. +.+||||+++++...++|+++++++||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999988642 358999999999888999999999999999999999854 3346999999999999
Q ss_pred CCceeEEEEEEcccC
Q 009822 88 KSTVLGSVIVTVESE 102 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~ 102 (524)
+|++||++.++|.++
T Consensus 81 ~dd~IG~~~l~L~~l 95 (108)
T cd04039 81 FNDYVATGSLSVQEL 95 (108)
T ss_pred CCcceEEEEEEHHHH
Confidence 999999999999987
No 47
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.66 E-value=1.4e-16 Score=123.69 Aligned_cols=66 Identities=30% Similarity=0.651 Sum_probs=48.6
Q ss_pred ccccccccCcccceEEeeeeeeee-ccceeeEEEeecceEEEEeccCccee-EEEEeccccccccccc
Q 009822 164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (524)
Q Consensus 164 ~f~~~F~lp~~e~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~ 229 (524)
.|++.|+||.+|.|+.+|.|++.+ .++.+|+||||+++|||+|+.+|..+ +++|||.||.+|+|.+
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 699999999999999999999998 89999999999999999999999888 9999999999999863
No 48
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.7e-15 Score=132.10 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=90.4
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE---CCeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEEEc
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW 83 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~d~ 83 (524)
...+.|.|+|++|++|+..+..+.+||||++.+ +....+|++++++.||.|||+|.|.+.. ....|.++|||+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 456789999999999999998999999999998 3456799999999999999999997422 235699999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
+..+++++||++.+++.++ ......|+.|++
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 9999999999999999988 556789999864
No 49
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.65 E-value=1.5e-15 Score=132.94 Aligned_cols=104 Identities=17% Similarity=0.313 Sum_probs=87.9
Q ss_pred CCceEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~d 82 (524)
...+.|.|+|++|+||++.+.. |.+||||++.+. .+..+|+++++++||.|||+|.|. +.. ....|.++|||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 4568999999999999998876 899999999984 345689999999999999999994 432 23469999999
Q ss_pred cCCCCCCceeEEEEEEcccC--C--CcccEEEEecC
Q 009822 83 WDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS 114 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~--~--~~~~~w~~L~~ 114 (524)
+|.++++++||++.++|+++ . .....|.+|++
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 99999999999999999988 2 44668888864
No 50
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=2.9e-15 Score=129.64 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=91.1
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i 92 (524)
|.|.|+|++|++|+..+..|.+||||++.+++ ...+|++++++.||.|||+|.|.+......|.|+|||++..+++++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 68999999999999999899999999999976 45789999999999999999999877778899999999999999999
Q ss_pred EEEEEEcccC-CCcccEEEEecC
Q 009822 93 GSVIVTVESE-GQTGAVWYTLDS 114 (524)
Q Consensus 93 G~~~i~l~~~-~~~~~~w~~L~~ 114 (524)
|++.+++.++ ......||.|..
T Consensus 81 G~~~~~l~~l~~~~~~~~~~~~~ 103 (120)
T cd04045 81 GSVEINVSDLIKKNEDGKYVEYD 103 (120)
T ss_pred eEEEEeHHHhhCCCCCceEEecC
Confidence 9999999988 556688998865
No 51
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.8e-15 Score=131.70 Aligned_cols=113 Identities=20% Similarity=0.389 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCcCCC-CCCCCCcEEEEEECC--eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009822 14 YLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST 90 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~ 90 (524)
|.|.|+|++|++|+..+ ..+.+||||++.++. ...+|+++.++.+|.|||.|.|.+......|.|+|||++..++++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 78999999999999765 356799999999987 678999999999999999999998866788999999999988999
Q ss_pred eeEEEEEEcccC--CCccc-EEEEecC---CCCeeEEEEEEE
Q 009822 91 VLGSVIVTVESE--GQTGA-VWYTLDS---PSGQVCLHIKTI 126 (524)
Q Consensus 91 ~iG~~~i~l~~~--~~~~~-~w~~L~~---~~G~i~~~l~~~ 126 (524)
+||.+.+++.++ ..... .|..|.. ..|+|++.++|.
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF 123 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence 999999999988 22222 3444442 347777777664
No 52
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=2.4e-15 Score=131.12 Aligned_cols=105 Identities=26% Similarity=0.432 Sum_probs=93.4
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecC-CCCCccccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK 88 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~----~~~L~v~v~d~d~~~~ 88 (524)
|.|.|+|++|++|+..+..+.+||||++.++....+|++..+ +.||.||++|.|.+..+ ...|.|+|||.+..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 679999999999999998899999999999988888998875 89999999999999765 4679999999999989
Q ss_pred CceeEEEEEEcccC--CCcccEEEEecCCCCe
Q 009822 89 STVLGSVIVTVESE--GQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 89 d~~iG~~~i~l~~~--~~~~~~w~~L~~~~G~ 118 (524)
+++||.+.+++.++ ....+.|+.|.+..-.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~ 112 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPAKYN 112 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeeccceE
Confidence 99999999999988 5567899999875433
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=1.2e-15 Score=131.80 Aligned_cols=100 Identities=30% Similarity=0.467 Sum_probs=85.4
Q ss_pred CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC--CCcEEEEEEEEcC
Q 009822 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (524)
Q Consensus 12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~v~d~d 84 (524)
..+.|.|+|++|+||++++ .|.+||||++++.. .+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4578999999999999998 88999999999853 35589999999999999999999854 3456899999999
Q ss_pred CCCC-CceeEEEEEEcccC--CCcccEEEEe
Q 009822 85 IIWK-STVLGSVIVTVESE--GQTGAVWYTL 112 (524)
Q Consensus 85 ~~~~-d~~iG~~~i~l~~~--~~~~~~w~~L 112 (524)
..+. +++||.+.+++.++ +.....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 8764 78999999999998 4446799986
No 54
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.65 E-value=1e-15 Score=133.55 Aligned_cols=110 Identities=23% Similarity=0.407 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeec-CCCCCccccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~-~t~nP~W~e~f~f~v~~~-----~~~L~v~v~d~d~~~ 87 (524)
+|.|+|++|++|+..+..+.+||||++++++ ...+|++.. ++.||.|||.|.|.+... ...|.|+|||++..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999987 778898875 589999999999998765 577999999999888
Q ss_pred CCceeEEEEEEcccC--CC-----cccEEEEecCCCCeeEEEEE
Q 009822 88 KSTVLGSVIVTVESE--GQ-----TGAVWYTLDSPSGQVCLHIK 124 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~--~~-----~~~~w~~L~~~~G~i~~~l~ 124 (524)
++++||.+.+++.++ .. ....||.|..+.|+..+.|.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 999999999999987 22 23689999887777777664
No 55
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.64 E-value=2e-15 Score=131.32 Aligned_cols=102 Identities=20% Similarity=0.372 Sum_probs=88.7
Q ss_pred CCceEEEEEEEEeecCcCCC-CCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~ 81 (524)
...+.|.|+|++|+||+..+ ..+.+||||++++.. ...+|++++++.+|.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45688999999999999998 788999999998731 356899999999999999999998642 457999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEe
Q 009822 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L 112 (524)
|++..+++++||++.++|+++ +.....||+|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999988 5556889987
No 56
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=6.1e-16 Score=136.54 Aligned_cols=108 Identities=18% Similarity=0.306 Sum_probs=93.2
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d 82 (524)
...+.|.|+|++|++|++.+..|.+||||++.+.. ...+|+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 45689999999999999999999999999999842 356899999999999999999997642 4579999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
++..+++++||++.++++..+....+|+.+....|+
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDK 125 (133)
T ss_pred CCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCC
Confidence 999889999999999999877777889988654443
No 57
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.64 E-value=2.3e-15 Score=131.67 Aligned_cols=103 Identities=19% Similarity=0.319 Sum_probs=89.6
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d 82 (524)
...+.|.|+|++|+||+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.+.|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 4568899999999999999988999999999984 3567899999999999999999998532 3679999999
Q ss_pred cCCC--CCCceeEEEEEEcccC--CCcccEEEEec
Q 009822 83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (524)
Q Consensus 83 ~d~~--~~d~~iG~~~i~l~~~--~~~~~~w~~L~ 113 (524)
++.. +++++||++.++|.++ +.....||+|.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9875 6899999999999998 45677899884
No 58
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=3.4e-15 Score=130.02 Aligned_cols=103 Identities=19% Similarity=0.348 Sum_probs=88.6
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEEEc
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW 83 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~d~ 83 (524)
.....|.|+|++|+||++.+..|.+||||++.+. ..+.+|++.++ .||.|||+|.|. +.. ....|.|+|||+
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 4567899999999999999988999999998763 34568888887 999999999998 543 356699999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
+.++++++||++.|+|+.+ ......|++|++
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 9999999999999999988 556789999974
No 59
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=2.8e-15 Score=133.59 Aligned_cols=88 Identities=25% Similarity=0.468 Sum_probs=84.1
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG 93 (524)
|.|.|+|++|++|+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999999887 8999999999999999999999999999999999999888888999999999999999999
Q ss_pred EEEEEcccC
Q 009822 94 SVIVTVESE 102 (524)
Q Consensus 94 ~~~i~l~~~ 102 (524)
.+.+++.++
T Consensus 81 ~a~i~l~~l 89 (145)
T cd04038 81 EAEIDLEPL 89 (145)
T ss_pred EEEEEHHHh
Confidence 999999987
No 60
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.62 E-value=4.9e-15 Score=128.86 Aligned_cols=104 Identities=20% Similarity=0.324 Sum_probs=89.6
Q ss_pred CCceEEEEEEEEeecCcCCC-CCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEc
Q 009822 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~ 83 (524)
...+.|.|+|++|++|+..+ ..+.+||||++++. ....+|+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 44678999999999999998 68899999999973 3456899999999999999999998642 35799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
+..+++++||++.++|+++ ......|++|++
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 9988899999999999988 455679999864
No 61
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=4.3e-15 Score=126.81 Aligned_cols=98 Identities=23% Similarity=0.494 Sum_probs=86.1
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-----~~~L~v~v~d~d~~~ 87 (524)
.+.|+|+|++|++|+ .|.+||||++++++++.+|++++++.||.|||+|.|.+..+ ...|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 488999999999998 57899999999999999999999999999999999997542 356999999999998
Q ss_pred CCceeEEEEEEcccC--C---CcccEEEEecC
Q 009822 88 KSTVLGSVIVTVESE--G---QTGAVWYTLDS 114 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~--~---~~~~~w~~L~~ 114 (524)
++++||.+.++|+.+ . .....|++|..
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999987 2 33578999853
No 62
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.62 E-value=3.9e-15 Score=133.49 Aligned_cols=101 Identities=26% Similarity=0.571 Sum_probs=88.5
Q ss_pred CCCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-----------------------------EEeeeeecCCCC
Q 009822 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----------------------------KRFSSMVPGSRY 58 (524)
Q Consensus 8 ~~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-----------------------------~~~T~~~~~t~n 58 (524)
...+..+.|.|+|++|++|.++|..|.+||||++.+... ..+|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 456789999999999999999999999999999998531 257899999999
Q ss_pred CccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEe
Q 009822 59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL 112 (524)
Q Consensus 59 P~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L 112 (524)
|.|||+|.|.+... ...|.|+|||++ +++||++.++++++ ....+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 99999999998764 567999999997 78999999999988 4567899987
No 63
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.62 E-value=9.6e-16 Score=135.22 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=90.7
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d 82 (524)
+....|.|+|++|+||++.+..|.+||||++++.. .+.+|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 45678999999999999999899999999999832 24579999999999999999999864 34669999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCC
Q 009822 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G 117 (524)
+|..+++++||++.+.....+....+|..+....+
T Consensus 92 ~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~ 126 (136)
T cd08406 92 STEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLR 126 (136)
T ss_pred CCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCC
Confidence 99999999999999988777777778887755443
No 64
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=3.9e-15 Score=135.52 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=90.3
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI 80 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v 80 (524)
....+.|.|+|++|+||+..+..|.+||||++.+. ...++|++++++.||.|||+|.|.+.. ....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 34689999999999999999989999999999872 356789999999999999999998532 235699999
Q ss_pred EEcCCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
||++.++++++||++.+++.++ ....+.|+.|.+
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999999999999999999987 445688988864
No 65
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=5.8e-15 Score=132.21 Aligned_cols=99 Identities=22% Similarity=0.369 Sum_probs=85.7
Q ss_pred EEEEEEEeecCcCCCCCC--------------CCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEec--CCCcEEEEE
Q 009822 16 IKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVT 79 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~v~ 79 (524)
|.|+|++|++|+.+|..+ .+||||++.+++.+.+|+++++++||.|||+|.|.+. .....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988554 6899999999999999999999999999999999864 345689999
Q ss_pred EEEcCCCCCCceeEEEEEEcccC-CCc--------ccEEEEecC
Q 009822 80 IYDWDIIWKSTVLGSVIVTVESE-GQT--------GAVWYTLDS 114 (524)
Q Consensus 80 v~d~d~~~~d~~iG~~~i~l~~~-~~~--------~~~w~~L~~ 114 (524)
|||+|..++|++||.+.+++.++ ... ...|+.|.+
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999999999999999999987 222 247777754
No 66
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.61 E-value=6.8e-15 Score=127.91 Aligned_cols=93 Identities=19% Similarity=0.372 Sum_probs=82.6
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEec--CCCcEEEEEEEEcCCCC
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIW 87 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~v~v~d~d~~~ 87 (524)
....+.|.|+|++|++|+. +..|.+||||++++++...+|+++++++||.|||+|.|... .....|.|+|||++..+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4557899999999999974 67789999999999988899999999999999999999743 24678999999999999
Q ss_pred CCceeEEEEEEcccCC
Q 009822 88 KSTVLGSVIVTVESEG 103 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~~ 103 (524)
+|++||.+.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999998653
No 67
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=1.8e-14 Score=126.15 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=83.8
Q ss_pred EEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 009822 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI 96 (524)
Q Consensus 20 vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~~~d~~iG~~~ 96 (524)
|++|++|+. ..|.+||||++.++....+|++++++.||.|||+|.|.+.. ....|.|+|||++..+++++||.+.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999988 67899999999999888999999999999999999999864 3577999999999999999999999
Q ss_pred EEcccC--CCcccEEEEecCC
Q 009822 97 VTVESE--GQTGAVWYTLDSP 115 (524)
Q Consensus 97 i~l~~~--~~~~~~w~~L~~~ 115 (524)
++++++ +.....|++|...
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~ 100 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDS 100 (127)
T ss_pred EEhhHcccCCceEEEEeCcCC
Confidence 999988 4556789999643
No 68
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.60 E-value=3.5e-15 Score=132.21 Aligned_cols=108 Identities=19% Similarity=0.391 Sum_probs=92.4
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d 82 (524)
...+.|.|+|++|++|+..+..|.+||||++.+.. ...+|+++++++||.|+|+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 44678999999999999999999999999999742 24578999999999999999999853 34569999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
++.++++++||++.+++...+....+|++|....|+
T Consensus 92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR 127 (136)
T ss_pred CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence 999999999999999999876667889998765565
No 69
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.60 E-value=2.8e-15 Score=132.25 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=87.8
Q ss_pred CCCceEEEEEEEEeecCcCCCC--CCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT 79 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~--~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~ 79 (524)
.+..+.|.|.|++|+||++++. .+.+||||++++.. .+.+|++.++++||+|||.|.|.+.. ....|.|+
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 3567889999999999999983 35599999999753 24579999999999999999999864 24569999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEecC
Q 009822 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (524)
Q Consensus 80 v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~ 114 (524)
|||+|.++++++||++.+.+...+....+|..+..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~ 125 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLD 125 (138)
T ss_pred EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHh
Confidence 99999999999999999999876666677776643
No 70
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=8.6e-15 Score=129.64 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=87.7
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEEC----CeEEeeeeecCCCCCccccEEEEEecCC----------------CcE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ 75 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~~~----------------~~~ 75 (524)
|.|+|++|++|+.+ ..|.+||||+++++ ...++|+++.++.+|.|+|+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999997 6778999999999999999999997653 456
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCC
Q 009822 76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (524)
Q Consensus 76 L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~ 115 (524)
|.|+|||++..++++|||++.+++.++ ......||+|.++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999988999999999999987 4456899999874
No 71
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=5.5e-16 Score=153.31 Aligned_cols=106 Identities=25% Similarity=0.494 Sum_probs=93.5
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC--CCcEEEEEEEEcCC
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI 85 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~v~d~d~ 85 (524)
...|+|+|.+|+||.++|.+|.+||||.+++- ..+++|++++.++||+|||+|.|.+.. .+++|.|+|||||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 45789999999999999999999999999972 346789999999999999999999854 46779999999999
Q ss_pred CCCCceeEEEEEEcccC-CCcccEEEEecC-CCCe
Q 009822 86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (524)
Q Consensus 86 ~~~d~~iG~~~i~l~~~-~~~~~~w~~L~~-~~G~ 118 (524)
.+++||+|...+.++++ ..+.+.||.|.+ ..|+
T Consensus 259 TsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGE 293 (683)
T ss_pred cccccccceecccHHHHhhcchhhHHHHhhhhcCc
Confidence 99999999999999999 667889999875 3454
No 72
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.59 E-value=2.2e-15 Score=133.55 Aligned_cols=107 Identities=28% Similarity=0.437 Sum_probs=91.1
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC--C---eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~ 81 (524)
++..+.|.|+|++|++|+.++..|.+||||++.+. . ...+|+++++++||.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~ 90 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVL 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 45678999999999999999999999999999984 2 345799999999999999999997532 246999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEecCCC
Q 009822 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPS 116 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~ 116 (524)
|++.++++++||.+.+++...+....+|+++....
T Consensus 91 d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~ 125 (136)
T cd08402 91 DYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASP 125 (136)
T ss_pred eCCCCCCCceeEEEEECCccCChHHHHHHHHHhCC
Confidence 99999999999999999988766677888875533
No 73
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1.5e-14 Score=124.30 Aligned_cols=104 Identities=26% Similarity=0.465 Sum_probs=90.7
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~iG 93 (524)
|+|+|++|++|+..+..+.+||||++.+.+ ...+|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999888999999999965 44689999999999999999999875 4577999999999988999999
Q ss_pred EEEEEcccC--CCcccEEEEecCCCCee
Q 009822 94 SVIVTVESE--GQTGAVWYTLDSPSGQV 119 (524)
Q Consensus 94 ~~~i~l~~~--~~~~~~w~~L~~~~G~i 119 (524)
++.+++.++ +.....|++|.+++|.-
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~ 108 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGGGK 108 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCCcc
Confidence 999999987 45678899998755543
No 74
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=3.4e-14 Score=122.33 Aligned_cols=105 Identities=29% Similarity=0.437 Sum_probs=85.0
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCCCCCce
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV 91 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~~~d~~ 91 (524)
|.|+|++|++|+.. |.+||||.+++++.. .+|+++++ .+|.|||+|.|.+.. ....|.+.+||.+..+.+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 789999999998754 68999988 999999999999875 23558888999887766777
Q ss_pred eEEEEEEcccCCCcccEEEEecCC------CCeeEEEEE
Q 009822 92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (524)
Q Consensus 92 iG~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~ 124 (524)
+|.+.+.....+...+.|++|.+. .|+|++++.
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 887776665557778899999763 466666654
No 75
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.58 E-value=3.2e-15 Score=113.05 Aligned_cols=59 Identities=36% Similarity=0.693 Sum_probs=56.5
Q ss_pred ccCcccceEEeeeeeeeeccceeeEEEeecceEEEEeccCccee-EEEEecccccccccc
Q 009822 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRS 228 (524)
Q Consensus 170 ~lp~~e~l~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~ 228 (524)
+||++|.|+.+|.|+|++.++++||||||++++||+|+.+|+.+ +++||+.+|.+|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 37899999999999999999999999999999999999999999 999999999999985
No 76
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.57 E-value=2e-14 Score=126.51 Aligned_cols=105 Identities=27% Similarity=0.493 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC--CcEEEEEEEEcCCC
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII 86 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~v~d~d~~ 86 (524)
+.|.|+|++|++|+..+..+.+||||.+.+.. ...+|++++++.+|.|||+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 78999999999999998888999999999852 567899999999999999999997643 46799999999988
Q ss_pred CCCceeEEEEEEcccC-CCcccEEEEecC-CCCe
Q 009822 87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (524)
Q Consensus 87 ~~d~~iG~~~i~l~~~-~~~~~~w~~L~~-~~G~ 118 (524)
+++++||++.++++++ ......||+|.. +.|+
T Consensus 93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~ 126 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE 126 (131)
T ss_pred CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence 8999999999999988 446788999965 4565
No 77
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.56 E-value=9.2e-15 Score=129.20 Aligned_cols=108 Identities=23% Similarity=0.414 Sum_probs=90.7
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d 82 (524)
+..+.|+|+|++|++|++++..|.+||||++.+.. ...+|+++++++||.|+|+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45688999999999999999999999999999732 245788889999999999999997531 2469999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
++..+++++||++.+++...+.....|+++....|+
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK 126 (134)
T ss_pred CCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence 999999999999999988666667788887654444
No 78
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.56 E-value=8.5e-15 Score=129.77 Aligned_cols=108 Identities=26% Similarity=0.415 Sum_probs=90.8
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC--C---eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d 82 (524)
+..+.|.|+|++|+||+..+..|.+||||++.+. + ...+|++++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 4568899999999999999989999999999873 2 34579999999999999999999752 24579999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
++.++++++||++.+++...+....+|+++...+|+
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~ 127 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQ 127 (136)
T ss_pred CCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCC
Confidence 999999999999999999876666778877554443
No 79
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.56 E-value=2.6e-14 Score=126.09 Aligned_cols=93 Identities=22% Similarity=0.414 Sum_probs=81.9
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-------CeEEeeeeecCCCCCccccEEEEEecC-----CCcEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIV 78 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v 78 (524)
...+.|+|+|++|++|+..+..|.+||||++.+. ....+|+++++++||.|||+|.|.+.. ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 3457899999999999999988999999999984 345789999999999999999999864 2457999
Q ss_pred EEEEcCCCCCCceeEEEEEEcccCC
Q 009822 79 TIYDWDIIWKSTVLGSVIVTVESEG 103 (524)
Q Consensus 79 ~v~d~d~~~~d~~iG~~~i~l~~~~ 103 (524)
+|||++..+++++||++.++|+++.
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCC
Confidence 9999999998999999999999873
No 80
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.55 E-value=1.2e-14 Score=128.61 Aligned_cols=108 Identities=22% Similarity=0.448 Sum_probs=89.8
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-C----eEEeeeeecCCCCCccccEEEEEecC--C-CcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-~----~~~~T~~~~~t~nP~W~e~f~f~v~~--~-~~~L~v~v~d 82 (524)
+..+.|.|+|++|++|+..+..|.+||||++.+. + ...+|++++++.||.|||+|.|.+.. . ...|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 5568999999999999999999999999999973 2 34589999999999999999999843 2 3469999999
Q ss_pred cCCCCCCceeEEEEEEcccCCC-cccEEEEecCCCCe
Q 009822 83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ 118 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~~~-~~~~w~~L~~~~G~ 118 (524)
++..+++++||++.|.....+. ...+|+.|....|.
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~ 127 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRT 127 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCC
Confidence 9999999999999887766543 46789888765554
No 81
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=1.1e-14 Score=129.15 Aligned_cols=109 Identities=20% Similarity=0.355 Sum_probs=91.4
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC------eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v 80 (524)
+...+.|.|+|++|+||++++..|.+||||++.+.. .+.+|++.+++.||.|||+|.|.+.. ....|.|+|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 356789999999999999999999999999999832 24589999999999999999999864 345799999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCC-cccEEEEecCCCCe
Q 009822 81 YDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ 118 (524)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~~~~-~~~~w~~L~~~~G~ 118 (524)
||++.++++++||++.+++...+. ...+|+.+....++
T Consensus 91 ~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~ 129 (138)
T cd08408 91 YNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQ 129 (138)
T ss_pred EECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCC
Confidence 999999999999999999887753 45788887654443
No 82
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.54 E-value=2e-13 Score=122.36 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=88.9
Q ss_pred EEEEEEEeec--CcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEEecCC---------CcEEEEE
Q 009822 16 IKLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT 79 (524)
Q Consensus 16 L~V~vi~A~~--L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---------~~~L~v~ 79 (524)
..++|+.|++ |+..+..+.+||||++++ ..++.+|+++++++||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666666 777777889999999986 24577999999999999999999998543 2459999
Q ss_pred EEEcCCC-CCCceeEEEEEEcccC--CCcccEEEEecC----CCCeeEEEEEEE
Q 009822 80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTI 126 (524)
Q Consensus 80 v~d~d~~-~~d~~iG~~~i~l~~~--~~~~~~w~~L~~----~~G~i~~~l~~~ 126 (524)
|||++.+ ++|++||.+.++|+.+ ......|++|.. -+|++.+.+++.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence 9999986 4799999999999998 445667999853 358887777754
No 83
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.53 E-value=1.6e-14 Score=127.46 Aligned_cols=108 Identities=26% Similarity=0.440 Sum_probs=93.1
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-----EEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d 82 (524)
+..+.|.|+|++|++|+..+..+.+||||++.+... ..+|+++.++.+|.|||+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 345789999999999999998899999999998532 45899999999999999999998653 4679999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
.+..+++++||.+.+++++.+....+|++|....|+
T Consensus 91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK 126 (134)
T ss_pred cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence 998888999999999999976677899999765454
No 84
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=7.5e-14 Score=121.56 Aligned_cols=89 Identities=24% Similarity=0.492 Sum_probs=79.5
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE--EeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~ 91 (524)
+|+|.|++|++|+..+..|.+||||++.+++.. .+|+++++++||.|||+|.|.+.. ....|.|+|||++..+++++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 478999999999999999999999999998765 468888999999999999999754 35679999999999999999
Q ss_pred eEEEEEEcccCC
Q 009822 92 LGSVIVTVESEG 103 (524)
Q Consensus 92 iG~~~i~l~~~~ 103 (524)
||++.+++++..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999773
No 85
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.52 E-value=2e-13 Score=120.36 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=82.5
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-------------eEEeeeeecCCCCCcc-ccEEEEEecCCCcEEEEEE
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------------EKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI 80 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-------------~~~~T~~~~~t~nP~W-~e~f~f~v~~~~~~L~v~v 80 (524)
+..|++++|++|+ ++..|.+||||++.+.. +..+|+++++++||.| ||+|.|.+.. ...|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4689999999998 78889999999999842 3578999999999999 9999999853 56899999
Q ss_pred EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEecCC
Q 009822 81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP 115 (524)
Q Consensus 81 ~d~d~~~~---d~~iG~~~i~l~~~~-----~~~~~w~~L~~~ 115 (524)
||++..++ +++||++.+++.++- .....|++|..+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99875443 789999999999872 235679999754
No 86
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.52 E-value=6e-14 Score=122.17 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=86.9
Q ss_pred CCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCC-CCccccEEEEEecC--CCcEEEEEE
Q 009822 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDE--LPVQIIVTI 80 (524)
Q Consensus 9 ~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~-nP~W~e~f~f~v~~--~~~~L~v~v 80 (524)
..+..+.|+|.|++|+||++....+..||||++.+- -.+.+|++.++++ +|.|||+|.|++.. ....|.|+|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 457789999999999999998667778999999873 2356799999996 59999999999864 234588999
Q ss_pred EEcCCCCCCceeEEEEEEcccC-CCcccEEEEecC
Q 009822 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (524)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L~~ 114 (524)
||++..+++++||++.+..+.. +...++|.+...
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~ 123 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA 123 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence 9999999999999999999875 445677877643
No 87
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=7.2e-14 Score=121.01 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=81.8
Q ss_pred EEEeecCcCCCCCCCCCcEEEEEECCe-------EEeeeeecCCCCCccccEEEEEec-CCCcEEEEEEEEcCC----CC
Q 009822 20 LLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----IW 87 (524)
Q Consensus 20 vi~A~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~v~v~d~d~----~~ 87 (524)
.++|++|+..+..|.+||||++++... ..+|+++++++||.|+|+|.|.+. +....|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 489999999999999999999998654 368999999999999999999854 345679999999997 78
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
++++||++.+++.++ ......|++|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 999999999999998 455677888843
No 88
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.51 E-value=1.6e-14 Score=154.84 Aligned_cols=477 Identities=23% Similarity=0.265 Sum_probs=281.0
Q ss_pred CCCCCCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEc
Q 009822 5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW 83 (524)
Q Consensus 5 ~~~~~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~ 83 (524)
++......++...+..+.+-++..-...+.++||..+..............+.+|.|++.+.|+-.. +-....+..+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~e 167 (590)
T KOG1032|consen 88 KGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDE 167 (590)
T ss_pred CcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeee
Confidence 4455556667776777777777666667788999999887777778888889999999999998543 234455666665
Q ss_pred CCC-CCCceeEEEEEEccc-CCCcccEEEEecCCCCeeE---EEEEEEeccccccccccCcccccccccccccCCCCccc
Q 009822 84 DII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV 158 (524)
Q Consensus 84 d~~-~~d~~iG~~~i~l~~-~~~~~~~w~~L~~~~G~i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+.. .+..-.|.+...+.- .......|..|..+.+... +.+........+.+...+++......- .-..+.+.+.
T Consensus 168 I~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~-~~~~~~~~~~ 246 (590)
T KOG1032|consen 168 ITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEV-NDDQQGNVDN 246 (590)
T ss_pred eeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCc-Cccccccccc
Confidence 532 222223333222221 2445678888888776543 344444444444555555554432211 0111345566
Q ss_pred cccccccccccccCcccceEEeeeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCc--
Q 009822 159 HQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA-- 236 (524)
Q Consensus 159 ~~k~~~f~~~F~lp~~e~l~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~-- 236 (524)
.+.+.++...|++|+.|.+..+++|.+.+...++|+++++....+|++.+||..+.+..+++++..++........+.
T Consensus 247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~ 326 (590)
T KOG1032|consen 247 SQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSG 326 (590)
T ss_pred CCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCcc
Confidence 778899999999999999999999999999999999999999999999999999999999999999998887765554
Q ss_pred -EEEEEecCCCCCCCCCCC--CCCCceeEEEeeeechHHHHHHHHHHHHhhccchhhHHhhhhhhccccCCCCCCCCccc
Q 009822 237 -ITIILRMGAGGHGVPPLG--SPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRRQ 313 (524)
Q Consensus 237 -i~i~~~~~~~~~~~~~~~--~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~e~~~~~~s~~~~~s~~~~~s~~~ 313 (524)
......-+.++|+..+-+ ...+...+.|..+... ++++.+......+..+......+..-.++.+.+. .
T Consensus 327 ~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~-----~ 398 (590)
T KOG1032|consen 327 ILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSC-----K 398 (590)
T ss_pred ceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcce-----e
Confidence 222222222344333332 2235555555555332 4444443322221111000000000000000000 0
Q ss_pred ccccccc-cC-CCCCCCCCccccccceeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEE
Q 009822 314 AKIVEET-VT-KPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVR 391 (524)
Q Consensus 314 ~~~~~d~-~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R 391 (524)
-...... .. .+-.. .+..+.....++.+.. ++-+|+ +..-...-+...+...+.-++|. .+..++..|
T Consensus 399 l~v~~~V~~~~~sw~~-------~~~~~~~~~~k~lv~~-~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-v~~~~~~v~ 468 (590)
T KOG1032|consen 399 LKVSTSVEWTKSSWDV-------PVSEIGSNTLKDLVEI-LEKLLE-NGEELAKNQEKEDELTYEGSPWE-VEKPGGTVR 468 (590)
T ss_pred ecceeEEEeccCchhh-------ccccccccchhhHHHH-HHHHHh-ccHHHHHhhcccccccccCCCcc-ccCCCceee
Confidence 0000000 00 00000 0011111133333433 334444 33333333334444445556899 766688999
Q ss_pred EEEEEeeccCCCCCceeeEeEEEEEEecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCC----CCeEEEEEEEEE
Q 009822 392 EVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAE----NSSTIDIKVGAH 467 (524)
Q Consensus 392 ~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~----~~c~l~v~~~V~ 467 (524)
...|.---+.++.+....+...|...+......++++.....+++|||++|.++.||. ..... ..+++.++..+.
T Consensus 469 ~~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~~~~~ 547 (590)
T KOG1032|consen 469 QLSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVSFRIE 547 (590)
T ss_pred eeccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHHHHHH
Confidence 9888864556788888888888877766556788899999999999999999999997 22222 233334444444
Q ss_pred EeeeceeeeeeeccHHHHHHHHHHHHHHHHHHHHhhcC
Q 009822 468 FKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT 505 (524)
Q Consensus 468 f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l~~~~ 505 (524)
|++ +..++.+..+........+++++...++...
T Consensus 548 ~l~----~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~ 581 (590)
T KOG1032|consen 548 WLK----DIKMEARKIKQILRNDQDLLEVLFSLLEKLS 581 (590)
T ss_pred HHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 4444444555555555555555555555443
No 89
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.51 E-value=2.8e-13 Score=118.12 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=83.2
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i 92 (524)
-.|.|+|++|+ |...+..+.+||||++++++. ..+|++++++.+|.|||.|.|.+.. ...|.|+|||++..+++++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence 36899999998 555656889999999999877 7899999999999999999999864 67899999999999999999
Q ss_pred EEEEEEcccCC-----Cc--ccEEEEec
Q 009822 93 GSVIVTVESEG-----QT--GAVWYTLD 113 (524)
Q Consensus 93 G~~~i~l~~~~-----~~--~~~w~~L~ 113 (524)
|++.++|+++. .. ...|++|.
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~ 107 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLS 107 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence 99999999871 11 23488885
No 90
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.50 E-value=5.3e-13 Score=118.34 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=84.0
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEE-eeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC--
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW-- 87 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~-- 87 (524)
+--..|.|.|++|++|++++ +|||.+.+++... +|+++.++.||.|+|.|.|........|.|.||+.+...
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 34567999999999998865 7999999998885 999999999999999999986555677999998765322
Q ss_pred --CCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 88 --~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
++.+||.+.|++..+ +...+.||+|.+
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 578999999999988 556789999965
No 91
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.49 E-value=2.8e-13 Score=114.85 Aligned_cols=81 Identities=15% Similarity=0.339 Sum_probs=70.6
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEc-------
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW------- 83 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~------- 83 (524)
|.|+|.+|+||+ +.+||||.+.+.. ...+|+++++++||.|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 679999999995 5689999998852 35789999999999999999999974 77899999998
Q ss_pred CCCCCCceeEEEEEEcccC
Q 009822 84 DIIWKSTVLGSVIVTVESE 102 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~ 102 (524)
|..++|+++|.+.+.|+.-
T Consensus 75 d~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred cccCcccEEEEEEEEECHH
Confidence 5667899999999999864
No 92
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.49 E-value=3e-13 Score=115.44 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=81.5
Q ss_pred CCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 009822 31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT 105 (524)
Q Consensus 31 ~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~---~~~ 105 (524)
.+|.+||||.+++++. ..+|++++++.||.|||.|.|.+.+. ...|.|+|||++.+ ++++||.+.++|+++ ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 4788999999999875 46899999999999999999998764 46699999999998 899999999999987 234
Q ss_pred ccEEEEecC-CCCeeEEEEEEEe
Q 009822 106 GAVWYTLDS-PSGQVCLHIKTIK 127 (524)
Q Consensus 106 ~~~w~~L~~-~~G~i~~~l~~~~ 127 (524)
...|++|.+ +.|+|++++.|.+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 579999974 5699888887764
No 93
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=4.4e-13 Score=116.60 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=83.6
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY 81 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~ 81 (524)
+..+.|.|+|++|++|++.+..+.+||||++.+. ....+|++++++.||.||++|.|. +.. ....|.|+||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 4568899999999999999988999999999973 235789999999999999999996 332 2467999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEE
Q 009822 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYT 111 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~ 111 (524)
|++.. .+++||.+.++++++......|+.
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEee
Confidence 99988 889999999999998555455443
No 94
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.48 E-value=9e-14 Score=123.22 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=85.8
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC--C-CcEEEEEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~--~-~~~L~v~v~d 82 (524)
+..+.|.|+|++|+||++.+ .+.+||||++.+.. .+.+|++++++.||.|||+|.|.+.. . ...|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 45688999999999999998 88899999999742 34589999999999999999999853 2 3569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
++..+++++||++.+..... +...++|..+..
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99999999999999986543 455677877654
No 95
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-12 Score=136.69 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=115.2
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD 84 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d 84 (524)
.....|.|+|++|++|+.++..|.+||||++++. ..+.+|++.++++||.|||+|.|.+.. ....|.+.|||+|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3456799999999999999977789999999985 355689999999999999999999642 3567999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEEEeccccccccccCcccccccccccccCCCC
Q 009822 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP 155 (524)
Q Consensus 85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (524)
+++++++||++.++|..+ ......|.+|... .|++.+.+++.+....-. -. -+++..+..
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~lt----v~-------v~kar~L~~ 312 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLT----VV-------VIKARNLKS 312 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEE----EE-------EEEecCCCc
Confidence 999999999999998887 3345789999752 268888888775521110 00 112334444
Q ss_pred ccccccccccccccccCccc
Q 009822 156 TVVHQKPGPLQTIFNLLPDE 175 (524)
Q Consensus 156 ~~~~~k~~~f~~~F~lp~~e 175 (524)
.+..+-+++|.+..-++.+.
T Consensus 313 ~~~~~~~d~~Vk~~l~~~~~ 332 (421)
T KOG1028|consen 313 MDVGGLSDPYVKVTLLDGDK 332 (421)
T ss_pred ccCCCCCCccEEEEEecCCc
Confidence 55555566776666555553
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.45 E-value=4.4e-13 Score=114.16 Aligned_cols=94 Identities=21% Similarity=0.368 Sum_probs=78.6
Q ss_pred EEEEEeecCcCCCCCCCCCcEEEEEECCe------EEeeeeecCCCCCccccEEEEEecC-----CCcEEEEEEEEcCCC
Q 009822 18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII 86 (524)
Q Consensus 18 V~vi~A~~L~~~d~~g~~dpyv~v~~~~~------~~~T~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~v~d~d~~ 86 (524)
+-.++|++|+..+..|.+||||++++... .++|+++++++||.|| +|.|.+.. ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 44579999999999999999999997533 4689999999999999 78887532 256799999999999
Q ss_pred CCCceeEEEEEEcccCCCcccEEEEe
Q 009822 87 WKSTVLGSVIVTVESEGQTGAVWYTL 112 (524)
Q Consensus 87 ~~d~~iG~~~i~l~~~~~~~~~w~~L 112 (524)
++|++||++.++++++......++.+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 99999999999999986555555554
No 97
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.45 E-value=2.3e-12 Score=112.71 Aligned_cols=102 Identities=22% Similarity=0.344 Sum_probs=85.1
Q ss_pred eEEEEEEEEeecCcCCC--CCCCCCcEEEEEE------CCeEEeeeeecCCC-CCccccEEEEEecCCC-cEEEEEEEEc
Q 009822 14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW 83 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d--~~g~~dpyv~v~~------~~~~~~T~~~~~t~-nP~W~e~f~f~v~~~~-~~L~v~v~d~ 83 (524)
..|+|+|++|++|+..+ ..+..||||.+++ .....+|++..++. ||.|+|+|.|.+..+. ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 47899999999999888 5789999999998 34557899887765 9999999999986543 4599999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEecCCCC
Q 009822 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G 117 (524)
+.. ++++||.+.++++++..+ ..|++|..+.|
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g-~~~~~l~~~~~ 113 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG-YRHVPLLDSKG 113 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc-eEEEEecCCCC
Confidence 987 889999999999998543 57889876444
No 98
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.43 E-value=3.6e-13 Score=158.71 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=98.9
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCC--cEEEEEEEEcCCCC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIW 87 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~--~~L~v~v~d~d~~~ 87 (524)
+--|.|.|+|++|+||. +..|.+||||++.++++ +.+|++++++.||.|||+|.|.+.+++ ..|.|+|||+|.++
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 44689999999999998 45799999999999965 778999999999999999999887755 67999999999986
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEecC---CCCe---eEEEEEEE
Q 009822 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI 126 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~--~~~~~~w~~L~~---~~G~---i~~~l~~~ 126 (524)
+| .||++.|++.++ +.....||+|.+ +.|+ +.+++.|.
T Consensus 2055 kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 KS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 55 899999999998 666789999975 6799 88888775
No 99
>PLN03008 Phospholipase D delta
Probab=99.43 E-value=1.2e-12 Score=142.02 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=98.3
Q ss_pred ceEEEEEEEEeecCcCCCC------------------------------------------CCCCCcEEEEEECCeE-Ee
Q 009822 13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSEK-RF 49 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~-~~ 49 (524)
.|.|.++|.+|++|+.+|. .+++||||.+.+++.+ .+
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 4789999999999975321 2467999999998764 58
Q ss_pred eeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCC-------CCeeE
Q 009822 50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVC 120 (524)
Q Consensus 50 T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~ 120 (524)
|+++++++||+|||+|.|.+..+...|.|+|||+|.++ +++||++.|+|.++ +...+.|++|... .|+|+
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~ 171 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF 171 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence 99999999999999999999887788999999999996 57999999999998 5567899999652 36788
Q ss_pred EEEEEEecccc
Q 009822 121 LHIKTIKLPVN 131 (524)
Q Consensus 121 ~~l~~~~~~~~ 131 (524)
++|.+.+....
T Consensus 172 v~lqf~pv~~~ 182 (868)
T PLN03008 172 IDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEcccc
Confidence 88888766543
No 100
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.9e-12 Score=133.44 Aligned_cols=125 Identities=29% Similarity=0.502 Sum_probs=107.0
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCC------
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------ 86 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~------ 86 (524)
...++++|+.|++|..+|..|++||||.+.++..+.+|+++...+||+|||.|.|.+++...++++.|||.|.-
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999899999999998842
Q ss_pred -----CCCceeEEEEEEcccCCCcccEEEEecCC------CCeeEEEEEEEeccccccccccCcc
Q 009822 87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYA 140 (524)
Q Consensus 87 -----~~d~~iG~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~~~~~~~~~~~~~~~~~ 140 (524)
-.|+|+|+..|.+..+....+.||.|..+ +|.|++.|.+. ++++..+-.|.
T Consensus 374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve---ikgeekvapyh 435 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE---IKGEEKVAPYH 435 (1283)
T ss_pred HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE---EcCccccccce
Confidence 35899999999999998888999999753 48888877754 44444444443
No 101
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.28 E-value=1.9e-11 Score=98.17 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=72.3
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECC---eEEeeeeecCCCCCccccEEEEEec-CCCcEEEEEEEEcCCCCCCce
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV 91 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~v~v~d~d~~~~d~~ 91 (524)
|.|+|++|+||...+..+..+|||++.+.. ...+|++..++.+|.|+++|.|.+. .....|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999975 6689999999999999999999964 334559999999999988999
Q ss_pred eEEEE
Q 009822 92 LGSVI 96 (524)
Q Consensus 92 iG~~~ 96 (524)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.14 E-value=4.3e-10 Score=92.34 Aligned_cols=97 Identities=30% Similarity=0.574 Sum_probs=84.2
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~iG 93 (524)
|.|+|++|++|......+..+|||.+.+.. ...+|.+...+.+|.|++.|.|.+.. ....|.++||+.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998877778899999999987 77899999999999999999999876 5677999999999887789999
Q ss_pred EEEEEcccCC---CcccEEEEe
Q 009822 94 SVIVTVESEG---QTGAVWYTL 112 (524)
Q Consensus 94 ~~~i~l~~~~---~~~~~w~~L 112 (524)
.+.+++..+. .....|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999874 445677764
No 103
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.11 E-value=8.4e-10 Score=90.99 Aligned_cols=87 Identities=24% Similarity=0.527 Sum_probs=78.0
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCe---EEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~ 91 (524)
|.|+|++|++|......+..+|||.+.+... ..+|+++.++.+|.|+++|.|.+... ...|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999988876678999999999764 68899999999999999999998776 7889999999998777899
Q ss_pred eEEEEEEcccC
Q 009822 92 LGSVIVTVESE 102 (524)
Q Consensus 92 iG~~~i~l~~~ 102 (524)
+|.+.+++.++
T Consensus 82 ~G~~~~~l~~~ 92 (101)
T smart00239 82 IGQVTIPLSDL 92 (101)
T ss_pred eEEEEEEHHHc
Confidence 99999999887
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.08 E-value=3e-10 Score=119.24 Aligned_cols=114 Identities=24% Similarity=0.389 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i 92 (524)
..|.|.|.+|+||++.+..|.+||||.+.++.+. .+|.++.+++.|-|.|+|.|.+...-..|.|-|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 3588999999999999999999999999998655 5899999999999999999999876777999999999 8999999
Q ss_pred EEEEEEcccC--CCcccEEEEecC------CCCeeEEEEEEEec
Q 009822 93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKL 128 (524)
Q Consensus 93 G~~~i~l~~~--~~~~~~w~~L~~------~~G~i~~~l~~~~~ 128 (524)
|.+.|.=.++ .++.+.|+.|.+ -.|+|++++.+...
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 9998887776 567899999976 24899888886533
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.04 E-value=1.4e-09 Score=94.79 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=73.6
Q ss_pred EEEEEEEeecCcCC--CCCCC--CCcEEEEEECC---eEEeeeeecCCCC--CccccEEEEEecC---------------
Q 009822 16 IKLELLAAKNLIGA--NLNGT--SDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE--------------- 71 (524)
Q Consensus 16 L~V~vi~A~~L~~~--d~~g~--~dpyv~v~~~~---~~~~T~~~~~t~n--P~W~e~f~f~v~~--------------- 71 (524)
|+|.|.+|++++.. +..|. +||||+..+.. .+++|.+..+++| |.||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999996543 34664 99999999853 5678999999999 9999999998643
Q ss_pred ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009822 72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (524)
Q Consensus 72 ---------~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~ 102 (524)
....|.++|||.|.+++|++||.+.++|..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l 121 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL 121 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence 1345999999999999999999999999987
No 106
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.6e-09 Score=113.21 Aligned_cols=103 Identities=26% Similarity=0.447 Sum_probs=83.9
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC--C-CcEEEEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIY 81 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~--~-~~~L~v~v~ 81 (524)
.+..|.|+|.|++|++|+.++..+..||||++.+- ..+.+|.+.++++||.|||+|.|.+.. . ...|.|+||
T Consensus 294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~ 373 (421)
T KOG1028|consen 294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW 373 (421)
T ss_pred ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence 35679999999999999999999999999999873 234578899999999999999998763 2 345999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEe
Q 009822 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L 112 (524)
|+|.++++++||++.+....-+....+|...
T Consensus 374 d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m 404 (421)
T KOG1028|consen 374 DHDTLGSNDLIGRCILGSDSTGEEVRHWQEM 404 (421)
T ss_pred EcccccccceeeEEEecCCCCchHHHHHHHH
Confidence 9999999999999888877533333444443
No 107
>PLN02223 phosphoinositide phospholipase C
Probab=98.96 E-value=5.4e-09 Score=109.65 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=84.8
Q ss_pred ceEEEEEEEEeecCcCC-----CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCCc-EEEEEEE
Q 009822 13 AYLIKLELLAAKNLIGA-----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTIY 81 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~-----d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~v~v~ 81 (524)
...|.|+|+.|++++.. +.....||||++.+. ....+|.+..++.||.|||+|.|.+..+.. .|+|+||
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987511 223568999999973 234577777889999999999999876554 4899999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCee
Q 009822 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV 119 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~i 119 (524)
|+|..++++|+|++.+|+..+..+ -++++|..+.|..
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~~ 524 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGKA 524 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcCC
Confidence 999888899999999999999765 3678887766664
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.86 E-value=1.4e-08 Score=112.54 Aligned_cols=120 Identities=17% Similarity=0.352 Sum_probs=97.4
Q ss_pred CCCCceEEEEEEEEeecCcCCC--CCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCC
Q 009822 9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85 (524)
Q Consensus 9 ~~~~~~~L~V~vi~A~~L~~~d--~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~ 85 (524)
.+..-|+|.|+|.+|++|...+ ..+..|||+.+.... ...+|++.++++||+|||+|.+.+......|.++|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 6677899999999999999888 689999999999743 3459999999999999999999998888999999999999
Q ss_pred CCCCceeEEEEEEcccC--CCc-ccEEEEecC---CCCeeEEEEEEEec
Q 009822 86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLDS---PSGQVCLHIKTIKL 128 (524)
Q Consensus 86 ~~~d~~iG~~~i~l~~~--~~~-~~~w~~L~~---~~G~i~~~l~~~~~ 128 (524)
..+|+.+|.+.++|..+ .+. ...-+.+.. ..|++...+++.+.
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence 99999999999999876 111 222333322 23777777766654
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.84 E-value=9e-09 Score=114.09 Aligned_cols=106 Identities=23% Similarity=0.381 Sum_probs=90.7
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEec-CCCcEEEEEEEEcCCCCC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWK 88 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~v~v~d~d~~~~ 88 (524)
.+.|-|.|.+..|.||+..|.+|.+||||.+.+... .++|+++++++||.|||.+.+.+. .....+.+.|+|||...+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence 457889999999999999999999999999999876 578999999999999999999986 456779999999999999
Q ss_pred CceeEEEEEEcccCCCcc-c-EEEEecCCC
Q 009822 89 STVLGSVIVTVESEGQTG-A-VWYTLDSPS 116 (524)
Q Consensus 89 d~~iG~~~i~l~~~~~~~-~-~w~~L~~~~ 116 (524)
++.||.+.++|..+.+.. . .-.+|.++.
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcc
Confidence 999999999999984332 2 334565543
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=98.84 E-value=2.4e-08 Score=106.96 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=84.1
Q ss_pred ceEEEEEEEEeecCcCC------CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC-cEEEEEE
Q 009822 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI 80 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~------d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v 80 (524)
...|.|+|+.|++|+.. +.....||||++.+- ..+.+|+++.++.||.||++|.|.+..+. ..|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 56899999999987431 112335999999873 35568999999999999999999976543 3489999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
||+|..+.++|+|++.++|..+..+. +|++|..+.|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~ 585 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE 585 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence 99999888999999999999997664 59999765544
No 111
>PLN02270 phospholipase D alpha
Probab=98.79 E-value=6.1e-08 Score=105.91 Aligned_cols=116 Identities=18% Similarity=0.313 Sum_probs=94.4
Q ss_pred ceEEEEEEEEeecCcCCC------------------CCCCCCcEEEEEECCeEE-eeeeecCC-CCCccccEEEEEecCC
Q 009822 13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEKR-FSSMVPGS-RYPMWGEEFNFSVDEL 72 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~-~T~~~~~t-~nP~W~e~f~f~v~~~ 72 (524)
.|.|.|+|++|++|+..+ ..+++|||+.+.+++... +|+++.+. .||.|+|.|.+++.-.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998631 135689999999987665 99999874 6999999999999887
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCCC-------CeeEEEEEEEecc
Q 009822 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-------GQVCLHIKTIKLP 129 (524)
Q Consensus 73 ~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~-------G~i~~~l~~~~~~ 129 (524)
...+.|+|.|.|.++. .+||.+.|++.++ +...+.|+++.... .+|++++.+....
T Consensus 87 ~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 8899999999998865 4999999999998 55688999996532 2466677666544
No 112
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.75 E-value=2.4e-09 Score=112.38 Aligned_cols=116 Identities=28% Similarity=0.491 Sum_probs=93.2
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC--------------------eE-----------EeeeeecCCCCC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--------------------EK-----------RFSSMVPGSRYP 59 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--------------------~~-----------~~T~~~~~t~nP 59 (524)
+....+.|.++.|.||.++|.+|.+|||+.+.+-. .. +-|++.++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 45566778889999999999999999999876410 00 127788899999
Q ss_pred ccccEEEEEecCCC-cEEEEEEEEcCC---------------------------------CCC---CceeEEEEEEcccC
Q 009822 60 MWGEEFNFSVDELP-VQIIVTIYDWDI---------------------------------IWK---STVLGSVIVTVESE 102 (524)
Q Consensus 60 ~W~e~f~f~v~~~~-~~L~v~v~d~d~---------------------------------~~~---d~~iG~~~i~l~~~ 102 (524)
.|+|.|.|.+.+.. ..+.+-+||+|. .+. |||+|++.|+|.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 99999999998754 559999999983 123 78999999999999
Q ss_pred -CCcccEEEEecCCC------CeeEEEEEEE
Q 009822 103 -GQTGAVWYTLDSPS------GQVCLHIKTI 126 (524)
Q Consensus 103 -~~~~~~w~~L~~~~------G~i~~~l~~~ 126 (524)
..+.++||.|++++ |.+++.|...
T Consensus 271 P~~Gld~WFkLepRS~~S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 271 PPDGLDQWFKLEPRSDKSKVQGQVKLKLWLS 301 (1103)
T ss_pred CcchHHHHhccCcccccccccceEEEEEEEe
Confidence 56789999998843 8888887754
No 113
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.74 E-value=5.9e-08 Score=103.88 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=83.6
Q ss_pred ceEEEEEEEEeecCcCC------CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC-cEEEEEE
Q 009822 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI 80 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~------d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v 80 (524)
..+|.|+|+.|++++.. +.....||||++.+- ....+|++..++.||.|||+|.|.+..+. ..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 223457999999973 33457888888999999999999976544 4489999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
+|+|..++++|+|+..+++..+..+. +.++|..+.|.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-R~V~L~~~~G~ 584 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI-HAVPLFNRKGV 584 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc-ceEeccCCCcC
Confidence 99998889999999999999997663 46788776665
No 114
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.72 E-value=3.2e-08 Score=101.64 Aligned_cols=113 Identities=18% Similarity=0.314 Sum_probs=94.5
Q ss_pred eEEEEEEEEeecCcCCCCC-CCCCcEEEEEECCeEEeeeeecCCCCCccc-cEEEEEecC---CCcEEEEEEEEcCCCCC
Q 009822 14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDE---LPVQIIVTIYDWDIIWK 88 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~-e~f~f~v~~---~~~~L~v~v~d~d~~~~ 88 (524)
|.|-|.|..|++|+.+|.. ...|.||.+++.+..++|.+..+++||.|| +.|.|++.+ .+..|.+++.|+|.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 6788999999999999863 458999999999999999999999999998 779999875 34569999999999999
Q ss_pred CceeEEEEEEcccC----------C--CcccEEEEecC----CCCeeEEEEEEE
Q 009822 89 STVLGSVIVTVESE----------G--QTGAVWYTLDS----PSGQVCLHIKTI 126 (524)
Q Consensus 89 d~~iG~~~i~l~~~----------~--~~~~~w~~L~~----~~G~i~~~l~~~ 126 (524)
+|-||.+.|+++++ + .....|+++.. -.|+|++.+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 99999999999976 1 23468999854 346776655544
No 115
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=7.8e-08 Score=78.98 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=68.3
Q ss_pred EEEEEEEeecCcCCC---CCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009822 16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (524)
Q Consensus 16 L~V~vi~A~~L~~~d---~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~ 91 (524)
|.|+|..|+++.-.+ ..+.+||||.++++.. +.+|++. .||.|||+|.|.+. ....+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 578999999998777 5778899999999876 6788774 79999999999995 47889999999854 23457
Q ss_pred eEEEEEEcccC
Q 009822 92 LGSVIVTVESE 102 (524)
Q Consensus 92 iG~~~i~l~~~ 102 (524)
||..++.++++
T Consensus 76 i~llW~~~sdi 86 (109)
T cd08689 76 VGLLWLRLSDI 86 (109)
T ss_pred eeeehhhHHHH
Confidence 89999988865
No 116
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.67 E-value=1.9e-07 Score=99.94 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=82.8
Q ss_pred ceEEEEEEEEeecCc----CC--CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC-cEEEEEE
Q 009822 13 AYLIKLELLAAKNLI----GA--NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI 80 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~----~~--d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v 80 (524)
...|.|+|+.|++++ .. +.....||||++.+. ..+.+|+++.++.||.|+|+|.|.+..+. ..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998752 11 123457999999973 34568999999899999999999976544 4489999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
||+|..+.++|+|+..+++..+..+. +.++|..+.|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy-R~V~L~~~~g~ 567 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI-RAFPLHSRKGE 567 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc-ceEEccCCCcC
Confidence 99998888999999999999997653 46778766655
No 117
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.63 E-value=1.2e-07 Score=101.50 Aligned_cols=105 Identities=20% Similarity=0.323 Sum_probs=83.5
Q ss_pred EEEEEEEEeecCcCCC-C---CCCCCcEEEEEECC-----eEEeeee-ecCCCCCccccEEEEEecCCCcE-EEEEEEEc
Q 009822 15 LIKLELLAAKNLIGAN-L---NGTSDPYAIITCGS-----EKRFSSM-VPGSRYPMWGEEFNFSVDELPVQ-IIVTIYDW 83 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d-~---~g~~dpyv~v~~~~-----~~~~T~~-~~~t~nP~W~e~f~f~v~~~~~~-L~v~v~d~ 83 (524)
+|.|.|+.+.++.+.- . ...+||||.+++-+ ...+|++ ..++-+|.|+|+|.|.+..+.-. |+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 8999999999775442 2 24589999999743 3457884 46789999999999998765544 89999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEecCCCCeeE
Q 009822 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~i~ 120 (524)
|..++|+|+|+..+|+.++..+.. -++|.++.|+..
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyR-hVpL~~~~G~~~ 732 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYR-HVPLLSREGEAL 732 (746)
T ss_pred CCCCcccccceeeccHHHhhCcee-eeeecCCCCccc
Confidence 999999999999999999976643 467766677653
No 118
>PLN02228 Phosphoinositide phospholipase C
Probab=98.60 E-value=3.3e-07 Score=97.83 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=82.4
Q ss_pred ceEEEEEEEEeecCcC---CC---CCCCCCcEEEEEEC-----CeEEeeeeecCCCCCcc-ccEEEEEecCCC-cEEEEE
Q 009822 13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDELP-VQIIVT 79 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~---~d---~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W-~e~f~f~v~~~~-~~L~v~ 79 (524)
...|.|+|++|++|+. .+ .....||||.+.+. ..+.+|+++.++.||.| +++|.|.+..+. ..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 11 12347999999973 34568999988899999 999999976544 448999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 80 v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
|+|+|..+.++|+|++.+++..+..+. +.++|.++.|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GY-R~VpL~~~~G~ 547 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGV-RAVRLHDRAGK 547 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCe-eEEEccCCCCC
Confidence 999998888999999999999996653 46688766655
No 119
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.55 E-value=4.2e-08 Score=103.25 Aligned_cols=92 Identities=25% Similarity=0.408 Sum_probs=80.7
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-------EEeeeeecCCCCCccccEEEEEecCC-----CcEEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIV 78 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~-----~~~L~v 78 (524)
.+.-.|.|.|+-|+++.+.|.+|.+||||++.+... .++|+++.+++||+|+|+|.|.+... ...|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 445578899999999999999999999999998643 45899999999999999999998642 233999
Q ss_pred EEEEcCCCCCCceeEEEEEEcccC
Q 009822 79 TIYDWDIIWKSTVLGSVIVTVESE 102 (524)
Q Consensus 79 ~v~d~d~~~~d~~iG~~~i~l~~~ 102 (524)
+|+|+|-++.+||-|++-+.|+.+
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred EeeccceecccccchHHHHhhCCC
Confidence 999999999999999999999987
No 120
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.55 E-value=3.7e-07 Score=97.36 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=92.0
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEe-eeeecCCCCCccc-cEEEEEecCCCcE-EEEEEEEcC
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRF-SSMVPGSRYPMWG-EEFNFSVDELPVQ-IIVTIYDWD 84 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~-T~~~~~t~nP~W~-e~f~f~v~~~~~~-L~v~v~d~d 84 (524)
.-.|.|.|+.|+.|+... .|-..|||.+.+- ..+++ |.+..+++||+|| |.|+|.+.++.-. |+|.|||.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 356889999999998543 4556799999862 34444 5555789999999 9999999876544 999999999
Q ss_pred CCCCCceeEEEEEEcccCCCcccEEEEecCC------CCeeEEEEEEEeccccccccccCcccccccccccc
Q 009822 85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASL 150 (524)
Q Consensus 85 ~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (524)
.++...|||++..|+..+..+ -+-++|.+. ...+.+.+. ..+......+........++|++.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLkN~ySEdlELaSLLv~i~--m~~~~~~~~~~~sS~~~lr~R~~~ 1211 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLKNGYSEDLELASLLVFIE--MRPVLESEEELYSSCRQLRRRQEE 1211 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc-ceeeecccCchhhhhhhhheeeeE--eccccCccccccchhHHHHHHHhh
Confidence 999989999999999988443 234566542 122223333 333333333444444555556543
No 121
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.39 E-value=1.1e-06 Score=92.96 Aligned_cols=93 Identities=25% Similarity=0.440 Sum_probs=73.1
Q ss_pred EEeecCcCCCCCCCCCcEEEEEECCeEE----eeeeecCCCCCccccEEEEEecCC----------------CcEEEEEE
Q 009822 21 LAAKNLIGANLNGTSDPYAIITCGSEKR----FSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI 80 (524)
Q Consensus 21 i~A~~L~~~d~~g~~dpyv~v~~~~~~~----~T~~~~~t~nP~W~e~f~f~v~~~----------------~~~L~v~v 80 (524)
+.++.+.+.. ++.+|||+++...+... +|++.+.+.+|.|+|.|.|.+... ...|++.+
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4445554443 56699999999765443 899999999999999999987543 23489999
Q ss_pred EE-cCCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 81 ~d-~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
|+ ++....++|+|++.+++... ......||.|++
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp 253 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP 253 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence 98 66666799999999999987 456678999986
No 122
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.16 E-value=1.3e-06 Score=91.90 Aligned_cols=102 Identities=22% Similarity=0.373 Sum_probs=84.3
Q ss_pred ccccccccccccccCcccceEEeeeeeeee---ccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccc-ee
Q 009822 158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FI 233 (524)
Q Consensus 158 ~~~k~~~f~~~F~lp~~e~l~~~~~c~l~~---~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~ 233 (524)
.+.+++.| .+|+|| |.+..+..|.++. ....+||||+|++++||.|...+ ...+++|+..|..|++.... .+
T Consensus 6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~ 81 (671)
T KOG4347|consen 6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF 81 (671)
T ss_pred hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence 35678899 999999 9999999998876 34589999999999999998865 48999999999999999844 44
Q ss_pred cCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHH
Q 009822 234 NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQ 278 (524)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~ 278 (524)
...|.+.|. +...+.|..+..|+..+--+.
T Consensus 82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~ 111 (671)
T KOG4347|consen 82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLH 111 (671)
T ss_pred hhhhHHhhc---------------CcceEEecchhhHHHHHHHHh
Confidence 447777775 567899999999998874333
No 123
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.04 E-value=3.1e-06 Score=92.73 Aligned_cols=91 Identities=22% Similarity=0.433 Sum_probs=80.6
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEE--eeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCC
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIW 87 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~--~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~ 87 (524)
+-..+++|++++|-+|.+.|.+|.+|||+.+.++.... +...+.+++||+|++-|.+...-+ ...|.++|||+|..+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 55677889999999999999999999999999997774 678889999999999999886543 455999999999999
Q ss_pred CCceeEEEEEEccc
Q 009822 88 KSTVLGSVIVTVES 101 (524)
Q Consensus 88 ~d~~iG~~~i~l~~ 101 (524)
.|+.||+..++|..
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 99999999999874
No 124
>PLN02352 phospholipase D epsilon
Probab=97.95 E-value=7.9e-05 Score=81.79 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=81.9
Q ss_pred ceEEEEEEEEeecCcCC----CCC-CCCCcEEEEEECCeEE-eeeeecCCCCCccccEEEEEecCCC-cEEEEEEEEcCC
Q 009822 13 AYLIKLELLAAKNLIGA----NLN-GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDI 85 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~----d~~-g~~dpyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v~d~d~ 85 (524)
.|+|.++|.+|+-+... +.. ...+||+.+.++.... +| .+..||.|+|.|.+.+.-.. ..+.|+|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 58899999999843322 111 1239999999987664 67 55569999999999987655 689999987
Q ss_pred CCCCceeEEEEEEcccC--CCc-ccEEEEecCCC-----C-eeEEEEEEEecccc
Q 009822 86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLPVN 131 (524)
Q Consensus 86 ~~~d~~iG~~~i~l~~~--~~~-~~~w~~L~~~~-----G-~i~~~l~~~~~~~~ 131 (524)
...+||.+.|++.++ +.. .+.|+++.... | ++++++.+.+....
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 357999999999998 333 78999996533 3 56666666655433
No 125
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.80 E-value=2e-05 Score=87.56 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=84.2
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEE-ec--C-CCcEEEEEEEEc
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VD--E-LPVQIIVTIYDW 83 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~-v~--~-~~~~L~v~v~d~ 83 (524)
.++|+|-|.-|++|.-..-+..+||||+.++.. .+++|++++++.+|.|||..... +. . ..++|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999997666577899999999842 34589999999999999998887 32 1 247799999999
Q ss_pred CCCCCCceeEEEEEEcccCC--CcccEEEEecC
Q 009822 84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS 114 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~~--~~~~~w~~L~~ 114 (524)
+.+..+.|+|.+.|+|.++. .....||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 99888999999999999884 34458999863
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=2.1e-05 Score=76.71 Aligned_cols=98 Identities=18% Similarity=0.285 Sum_probs=78.8
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEcC
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD 84 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~d 84 (524)
..-|.|++++|..|..+|.+|-+|||+..++.. .+.+|.+.+++++|.|++.|.+.+... ...+.|.|||++
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~ 311 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYD 311 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccC
Confidence 445789999999999999999999999998742 234788999999999999999988643 345999999999
Q ss_pred CCCCCceeEEEEEEcccCCCcccEEE
Q 009822 85 IIWKSTVLGSVIVTVESEGQTGAVWY 110 (524)
Q Consensus 85 ~~~~d~~iG~~~i~l~~~~~~~~~w~ 110 (524)
..+..+++|-+.+.+........+|+
T Consensus 312 ~G~s~d~~GG~~~g~~rr~~v~~h~g 337 (362)
T KOG1013|consen 312 IGKSNDSIGGSMLGGYRRGEVHKHWG 337 (362)
T ss_pred CCcCccCCCcccccccccchhhcCcc
Confidence 88788899987766665544444444
No 127
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.58 E-value=0.00014 Score=61.89 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=73.1
Q ss_pred EEEEEEEeecCcCCC-----------C--CCCCCcEEEEEEC----CeEEeeeeecCCCCCccccEEEEEec--------
Q 009822 16 IKLELLAAKNLIGAN-----------L--NGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVD-------- 70 (524)
Q Consensus 16 L~V~vi~A~~L~~~d-----------~--~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~-------- 70 (524)
|.|.|++|.||...- . .=..|+||.+.+. .+..+|+++.++-.|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468889999986431 0 1135899999853 45678999999999999999999864
Q ss_pred C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEe
Q 009822 71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL 112 (524)
Q Consensus 71 ~--------~~~~L~v~v~d~d~~----------~~d~~iG~~~i~l~~~---~~~~~~w~~L 112 (524)
+ ....+.++||+.+.- .+|-+||.+.||+.++ ..+...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 123589999997632 3456899999999987 5678899975
No 128
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.55 E-value=1.9e-05 Score=86.82 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=84.2
Q ss_pred CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEec----------CCCcEEEEEEE
Q 009822 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIVTIY 81 (524)
Q Consensus 12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~----------~~~~~L~v~v~ 81 (524)
..+.+++++.+|+.|...+..+.+|||+.+...++.+.|.++.++++|.|+++..|.-. .....+.++||
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y 283 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY 283 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence 34567888899999999999999999999999999999999999999999999999721 12344889999
Q ss_pred EcCCCCCCceeEEEEEEcccC-CCcccEEEEec
Q 009822 82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (524)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L~ 113 (524)
|.++.+.++|+|.......-. ..+.-.|+++-
T Consensus 284 d~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~ 316 (1105)
T KOG1326|consen 284 DLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM 316 (1105)
T ss_pred hhhhhchHHhhcccccceEEEecCCccceEEee
Confidence 999999999999976554433 34566788774
No 129
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=9.7e-05 Score=73.40 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=83.9
Q ss_pred CceEEEEEEEEeecCcCCCC-CCCCCcEEEEEECCe-----EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEE-EcC
Q 009822 12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWD 84 (524)
Q Consensus 12 ~~~~L~V~vi~A~~L~~~d~-~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~-d~d 84 (524)
..|.|.|.|++|++|..+.- ...++|||.+++... +.+|+...++++|.+.+...|+-..+...|.++|| |+.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 46889999999999987653 336899999997432 34688889999998888888887777788999999 677
Q ss_pred CCCCCceeEEEEEEcccCC---CcccEEEEecC
Q 009822 85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS 114 (524)
Q Consensus 85 ~~~~d~~iG~~~i~l~~~~---~~~~~w~~L~~ 114 (524)
++.++.|+|.+++-+.+++ .....||+|.+
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 7778889999999999983 35678999975
No 130
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=3.9e-05 Score=74.90 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=75.4
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEe-cCC---CcEEEEEEEEc
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV-DEL---PVQIIVTIYDW 83 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v-~~~---~~~L~v~v~d~ 83 (524)
...+.+++.+|.+|.+++..+..|||+.+.+.. .+.+|++..+++||.|+++..... ... ...+++.|+|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 346889999999999999999999999998742 346788999999999999877763 221 23488899999
Q ss_pred CCCCCCceeEEEEEEcccCC
Q 009822 84 DIIWKSTVLGSVIVTVESEG 103 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~~ 103 (524)
+.+..++++|+.++++..+.
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLK 191 (362)
T ss_pred cccccccCcccchhhhhccC
Confidence 99999999999998888774
No 131
>PF14470 bPH_3: Bacterial PH domain
Probab=97.31 E-value=0.004 Score=51.04 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=67.8
Q ss_pred cCcccceEEeeeeeeee-ccceeeEEEeecceEEEEecc-CcceeEEEEeccccccccccccceecCcEEEEEecCCCCC
Q 009822 171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH 248 (524)
Q Consensus 171 lp~~e~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~-~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~ 248 (524)
|.++|.++....|.+.. .....|-+++|+.+|.|++.. +|......||+++|.+|+..++. +.+.|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~------- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET------- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence 46789999999997663 345779999999999999875 67788899999999999998765 356888888
Q ss_pred CCCCCCCCCCceeEEEeeeechHHH
Q 009822 249 GVPPLGSPDGRVRYKFASFWNRNHA 273 (524)
Q Consensus 249 ~~~~~~~~~~~~~~~f~sf~~rd~~ 273 (524)
+..++.|.++ ..+.+
T Consensus 73 ---------~~~~~~i~~i-~k~~~ 87 (96)
T PF14470_consen 73 ---------NGEKIKIDNI-QKGDV 87 (96)
T ss_pred ---------CCEEEEEEEc-CHHHH
Confidence 3468888887 55544
No 132
>PLN02964 phosphatidylserine decarboxylase
Probab=97.22 E-value=0.00052 Score=74.89 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=68.8
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEE-EEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~-v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~ 90 (524)
.|.+.+++++|+ ++ ..|||.. +.++.+.++|.+.++|+||+||+...|.+... ....++.|||++.+++++
T Consensus 53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 577888998887 22 4688665 56788899999999999999999988887543 333799999999999999
Q ss_pred eeEEEEEEcccC
Q 009822 91 VLGSVIVTVESE 102 (524)
Q Consensus 91 ~iG~~~i~l~~~ 102 (524)
++|.+.+++...
T Consensus 126 lv~~~e~~~t~f 137 (644)
T PLN02964 126 LVGYCELDLFDF 137 (644)
T ss_pred hhhheeecHhhc
Confidence 999999988766
No 133
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=97.20 E-value=0.00048 Score=57.95 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=49.9
Q ss_pred eEEeeeeeeee-ccceeeEEEeecceEEEEec---------------cCcceeEEEEeccccccccccccceecCcEEEE
Q 009822 177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240 (524)
Q Consensus 177 l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~---------------~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~ 240 (524)
++-++.|.+.. ....+|++.|++++++|..+ .-.......+|+++|..|.+..-.+-..||+|-
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF 81 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF 81 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence 45688998866 56689999999999999976 333456778999999999976655434599999
Q ss_pred EecC
Q 009822 241 LRMG 244 (524)
Q Consensus 241 ~~~~ 244 (524)
+.+|
T Consensus 82 ~~dg 85 (106)
T PF14844_consen 82 FSDG 85 (106)
T ss_dssp ETTS
T ss_pred EcCC
Confidence 9653
No 134
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.96 E-value=0.085 Score=47.78 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=103.6
Q ss_pred eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeecc-C-----CCCCceeeEeEEE
Q 009822 341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK-S-----PIYPRDTAMTESQ 414 (524)
Q Consensus 341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~-~-----~~gpk~~~~~~~Q 414 (524)
..+|++|++++|.+|.+ ..|+...+...+..+.....-....+ +....+.-..|-. . .+.+..-.+.+++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~--g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGD--GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCC--eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 57899999999999876 57888888888876777766666543 3333333333331 1 2444556777777
Q ss_pred EEEecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHH
Q 009822 415 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELML 494 (524)
Q Consensus 415 ~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~ 494 (524)
+..... +..+........+ |....+.....++. ++.+|++.+.+.|+- |=.++-++||+.+.+...+.++.-.
T Consensus 80 ~w~~~~-~g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~e~ 152 (159)
T PF10698_consen 80 TWTPLD-DGRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEAEQ 152 (159)
T ss_pred EEecCC-CCeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHHHH
Confidence 663333 3455665555555 55588999999999 556899999988865 3358999999999998888888777
Q ss_pred HHHHHH
Q 009822 495 ETARSY 500 (524)
Q Consensus 495 ~~~~~~ 500 (524)
+.+.+.
T Consensus 153 ~~~~~w 158 (159)
T PF10698_consen 153 EFTAEW 158 (159)
T ss_pred HHHHhh
Confidence 766654
No 135
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0032 Score=66.50 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=78.4
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEEC-------CeEEeeeeecCCCCCccccEEEEEecCC----CcEEEEEEEEc
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~v~d~ 83 (524)
.++|.|+.|.+|+=. ..|.--||+.+.+- ..++.|++..++-.|.+||+|.|-+... .-.|.+.|-|+
T Consensus 1126 kvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred eEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 578999999999643 36777899999862 2344688888889999999999998642 23488999888
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (524)
Q Consensus 84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~ 114 (524)
.--..|..+|.+.++|.++ ...-..|++|..
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 7666788999999999998 455678999964
No 136
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.70 E-value=0.0049 Score=65.00 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=77.4
Q ss_pred EeeeeecCCCCCccccEEEEEe-cCCCcEEEEEEEEcCCC----CCCceeEEEEEEcccCCCcccEEEE--ecC--CCCe
Q 009822 48 RFSSMVPGSRYPMWGEEFNFSV-DELPVQIIVTIYDWDII----WKSTVLGSVIVTVESEGQTGAVWYT--LDS--PSGQ 118 (524)
Q Consensus 48 ~~T~~~~~t~nP~W~e~f~f~v-~~~~~~L~v~v~d~d~~----~~d~~iG~~~i~l~~~~~~~~~w~~--L~~--~~G~ 118 (524)
.+|+.+.+.+||.|.+.|.+.. .+.-+.|++.++|.+.. ...+|+|.+.+.+..+-........ +.+ ..|.
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~ 122 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS 122 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence 3789999999999999998874 45567799999998743 4568999999999987222222222 221 1122
Q ss_pred eEEEEEEEeccccccccccCcccccccccccccCCCCccccccccccccccccCccc
Q 009822 119 VCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDE 175 (524)
Q Consensus 119 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~~F~lp~~e 175 (524)
+.|.+........+ ...+.-+...+++++++..++++|...++.-.++
T Consensus 123 --g~iti~aee~~~~~-------~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~ 170 (529)
T KOG1327|consen 123 --GTITISAEEDESDN-------DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG 170 (529)
T ss_pred --ccEEEEeecccccC-------ceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence 23333333333332 1122222346789999999999999999765444
No 137
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.69 E-value=0.0026 Score=67.02 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=66.2
Q ss_pred EEeecCcCCCCCCCCCcEEEEEE--CC----eEEeeeeecCCCCCccccEEEEEec-----CCCcEEEEEEEEcCCCCCC
Q 009822 21 LAAKNLIGANLNGTSDPYAIITC--GS----EKRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDIIWKS 89 (524)
Q Consensus 21 i~A~~L~~~d~~g~~dpyv~v~~--~~----~~~~T~~~~~t~nP~W~e~f~f~v~-----~~~~~L~v~v~d~d~~~~d 89 (524)
++|.+|..+|..+++|||..+.- +. ...+|++++++++|.|. .|.+... +....+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 56889999999999999998863 22 23479999999999994 4555532 3457799999999999999
Q ss_pred ceeEEEEEEcccCC
Q 009822 90 TVLGSVIVTVESEG 103 (524)
Q Consensus 90 ~~iG~~~i~l~~~~ 103 (524)
++||.+..++..+.
T Consensus 222 ~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQ 235 (529)
T ss_pred CceeEecccHHHhc
Confidence 99999998888773
No 138
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.55 E-value=0.0032 Score=49.95 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=65.0
Q ss_pred EEEEEEeecCcCCCCCCC-CCcEEEE--EEC-CeEEeeeeecCCCCCccccEEEEEec--C-CCcEEEEEEEEcCCCCCC
Q 009822 17 KLELLAAKNLIGANLNGT-SDPYAII--TCG-SEKRFSSMVPGSRYPMWGEEFNFSVD--E-LPVQIIVTIYDWDIIWKS 89 (524)
Q Consensus 17 ~V~vi~A~~L~~~d~~g~-~dpyv~v--~~~-~~~~~T~~~~~t~nP~W~e~f~f~v~--~-~~~~L~v~v~d~d~~~~d 89 (524)
-++++.|++|.-....|. .--|++- .+. ....+|...+...||.|.|+|.|.+. . ....|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 478899999865432222 2234432 233 33457888889999999999999864 3 34569999988 44567
Q ss_pred ceeEEEEEEcccCC-CcccEEEE
Q 009822 90 TVLGSVIVTVESEG-QTGAVWYT 111 (524)
Q Consensus 90 ~~iG~~~i~l~~~~-~~~~~w~~ 111 (524)
+-||.+.+.+...+ +...+|.+
T Consensus 80 e~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHHHhhhhhc
Confidence 89999999999984 45667765
No 139
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.62 E-value=0.016 Score=58.64 Aligned_cols=113 Identities=11% Similarity=0.142 Sum_probs=79.6
Q ss_pred eEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC------------cEE
Q 009822 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP------------VQI 76 (524)
Q Consensus 14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~------------~~L 76 (524)
-.|.+.|+++++++......-.|-|+++.+. .++.+|.+++.+.+|.|+|.|.+.+.... ..+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3467778888887654322234678888752 34457899999999999999999986521 128
Q ss_pred EEEEEEcCCCC-CCceeEEEEEEcccCCC--cccEEEEecC----CCCeeEEEEEEE
Q 009822 77 IVTIYDWDIIW-KSTVLGSVIVTVESEGQ--TGAVWYTLDS----PSGQVCLHIKTI 126 (524)
Q Consensus 77 ~v~v~d~d~~~-~d~~iG~~~i~l~~~~~--~~~~w~~L~~----~~G~i~~~l~~~ 126 (524)
.|++|+...+- +|.++|.+.+.|..+.. .....++|.. -+|++.+++++.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 99999987654 58899999999988732 2344566643 247777766644
No 140
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=95.35 E-value=0.089 Score=43.75 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=63.8
Q ss_pred cceEEeeeeeeee-ccceeeEEEeecceEEEEecc----C-cc---------eeEEEEeccccccccccccceecCcEEE
Q 009822 175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SR---------QMKVIIPIGDIDEIQRSQHAFINPAITI 239 (524)
Q Consensus 175 e~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~----~-g~---------~~~~~i~~~~i~~i~k~~~~~~~~~i~i 239 (524)
|+++-+..|.+.. -.-..|++-||..+|+|.-.. + +. .....+++++|.+|.+..-.+=..|++|
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi 80 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL 80 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence 4577788998865 556889999999999999521 1 11 1233799999999988765443349999
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009822 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (524)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 279 (524)
...+ + .-.|.+|-+++.+.+++..
T Consensus 81 F~~d--------------~--~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 81 FLAS--------------R--TSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEeC--------------C--ceEEEEeCcHHHHHHHHhh
Confidence 9963 2 3456689888887776654
No 141
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.47 E-value=0.097 Score=57.81 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=71.9
Q ss_pred CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-------CeEEeeeeec-CCCCCccc-cEEEEE-ec-CCCcEEEE
Q 009822 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVP-GSRYPMWG-EEFNFS-VD-ELPVQIIV 78 (524)
Q Consensus 10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~~~~-~t~nP~W~-e~f~f~-v~-~~~~~L~v 78 (524)
+--.+++.|+||+|.-|..+. ...||.+..- ...++|++.. ++.||+|+ +.|.|. |. ..-..|+|
T Consensus 699 gvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred ceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 344678999999999997765 3489988852 2345788875 57999998 458887 32 22345999
Q ss_pred EEEEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822 79 TIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (524)
Q Consensus 79 ~v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~ 118 (524)
.||+.+ ..|||+--++++.++.+. +.+.|..+.++
T Consensus 775 avyeEg----gK~ig~RIlpvd~l~~GY-rhv~LRse~Nq 809 (1189)
T KOG1265|consen 775 AVYEEG----GKFIGQRILPVDGLNAGY-RHVCLRSESNQ 809 (1189)
T ss_pred eeeccC----CceeeeeccchhcccCcc-eeEEecCCCCC
Confidence 999975 369999999999886653 34556554433
No 142
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.24 E-value=0.11 Score=50.76 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=77.1
Q ss_pred CCceEEEEEEEEeecCcCCCC--CCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~--~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~ 87 (524)
...|.|.++++.+++|+-... .-+.+-||++..+.+. .+|.+.....--.|.|+|..++.. ...+.+-||.|+...
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 457899999999999965433 4567899999887443 355555556667799999998764 566889999998766
Q ss_pred CCceeEEEEEEcccC-CCcccEEEEecC-CCCeeEEEEEEE
Q 009822 88 KSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQVCLHIKTI 126 (524)
Q Consensus 88 ~d~~iG~~~i~l~~~-~~~~~~w~~L~~-~~G~i~~~l~~~ 126 (524)
++++.-..-+.+..+ ....++.+.|.- ..|++-+.+.+.
T Consensus 127 RHKLC~~g~l~~~~v~rqspd~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred hccccccchhhhhhhhhcCCcceeeeecccCCCCceecccC
Confidence 666432223333333 344455555532 357776666543
No 143
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.12 E-value=0.65 Score=47.23 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=82.6
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II 86 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~v~d~d-~~ 86 (524)
+.|.|++|+|.+... .-.-.+..++++....|..+..+-.|.|+..+..++.. ....|++++|-.| ..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999997752 34456777889999999999999999999998888642 3456999999988 45
Q ss_pred CCCceeEEEEEEcccC---C----CcccEEEEecCC-------CCeeEEEEEEEec
Q 009822 87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL 128 (524)
Q Consensus 87 ~~d~~iG~~~i~l~~~---~----~~~~~w~~L~~~-------~G~i~~~l~~~~~ 128 (524)
+..+.||.+-++|... . .....||+|.+- .-++.+.+.+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 5678999999998866 2 346789999763 2334455555433
No 144
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.81 E-value=0.51 Score=43.34 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=57.4
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEe--cCC--CcEEEEEEEEcC
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~v~v~d~d 84 (524)
.+.|+|+.+.+|... ....+-|+.+.+ +.... .|+.......+.|+|.+.|++ .+. ...|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 578999999998761 234566777654 44332 454444456799999999985 343 345999999975
Q ss_pred CCC----------------CCceeEEEEEEcccC
Q 009822 85 IIW----------------KSTVLGSVIVTVESE 102 (524)
Q Consensus 85 ~~~----------------~d~~iG~~~i~l~~~ 102 (524)
... ....||.+.++|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 322 135788888877654
No 145
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.73 E-value=0.87 Score=36.68 Aligned_cols=85 Identities=13% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCCcEEEEEECCeEE-eeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEE
Q 009822 33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT 111 (524)
Q Consensus 33 g~~dpyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~ 111 (524)
|.++..+++++++... +|.-.. ..+..|++.|.+++.. .++|.|.||-.|- ..+.|..-+.|.+... ....+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~--~~~~~ 79 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH--EVQLD 79 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc--cceec
Confidence 4478889999987654 444433 3578899999999975 7889999997763 2355666677776422 23344
Q ss_pred ecCCCCeeEEEEEE
Q 009822 112 LDSPSGQVCLHIKT 125 (524)
Q Consensus 112 L~~~~G~i~~~l~~ 125 (524)
|.+ .|.+..++.+
T Consensus 80 lep-qg~l~~ev~f 92 (98)
T cd08687 80 MEP-QLCLVAELTF 92 (98)
T ss_pred ccc-ccEEEEEEEe
Confidence 443 5766666654
No 146
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.64 E-value=0.58 Score=42.28 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=57.8
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEec--CC--CcEEEEEEEEcC
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWD 84 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v~--~~--~~~L~v~v~d~d 84 (524)
.+.|+|+.+.++...+ .++-|+.+.+ ++... .|..+.. .++.|||...|++. +. ...|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5789999999887643 4678888764 43322 3433333 57999999999863 33 456999999976
Q ss_pred CCC----CCceeEEEEEEcccC
Q 009822 85 IIW----KSTVLGSVIVTVESE 102 (524)
Q Consensus 85 ~~~----~d~~iG~~~i~l~~~ 102 (524)
... ....+|.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 421 124699999988765
No 147
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=93.10 E-value=4.2 Score=38.36 Aligned_cols=147 Identities=12% Similarity=0.233 Sum_probs=77.0
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEee---ccCCCCCceeeEeEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSL---CKSPIYPRDTAMTESQH 415 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~---~~~~~gpk~~~~~~~Q~ 415 (524)
-++.++++|++++|..++.| .....++........+ -+..+..++ +.|..- ...|+.++..- ..++
T Consensus 51 k~~~~i~~~~~~v~~~l~~d-~~~~~~Wd~~~~~~~~-------i~~~d~~~~-i~y~~~~~~~~~~vs~RDfV--~~r~ 119 (208)
T cd08868 51 RLTGVLDCPAEFLYNELVLN-VESLPSWNPTVLECKI-------IQVIDDNTD-ISYQVAAEAGGGLVSPRDFV--SLRH 119 (208)
T ss_pred EEEEEEcCCHHHHHHHHHcC-ccccceecCcccceEE-------EEEecCCcE-EEEEEecCcCCCcccccceE--EEEE
Confidence 45778999999999988864 3222221111111111 000011222 344321 11234444321 1222
Q ss_pred EEecCCCCeEEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822 416 AVLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE 489 (524)
Q Consensus 416 ~~~~~~~~~~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~ 489 (524)
.... ++.++++..+..-+..|-..-| .....|.|++.++ ++|.+...+.+...+| +-+.++.+.+.....+.
T Consensus 120 ~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~ 197 (208)
T cd08868 120 WGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDF 197 (208)
T ss_pred EEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHH
Confidence 3333 3444444444433566654443 2458899999854 6899998888888765 44555666666666665
Q ss_pred HHHHHHHHH
Q 009822 490 VELMLETAR 498 (524)
Q Consensus 490 ~~~~~~~~~ 498 (524)
++.+-+.+.
T Consensus 198 ~~~Lr~~~~ 206 (208)
T cd08868 198 MKHLRKRIA 206 (208)
T ss_pred HHHHHHHHh
Confidence 555554443
No 148
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=93.07 E-value=4.4 Score=37.61 Aligned_cols=134 Identities=12% Similarity=0.170 Sum_probs=72.4
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEe-eccCCCCCceeeEeEEEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LCKSPIYPRDTAMTESQHAV 417 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~-~~~~~~gpk~~~~~~~Q~~~ 417 (524)
-...+++++++++|+++.. .....++........+.. ..++ + ..+.|.. ..-.|+.++..-. ..+..
T Consensus 44 k~~~~i~~s~e~v~~vi~d--~e~~~~w~~~~~~~~vie----~~~~-~---~~i~~~~~~~p~pvs~Rdfv~--~~~~~ 111 (195)
T cd08876 44 KAVAEVDASIEAFLALLRD--TESYPQWMPNCKESRVLK----RTDD-N---ERSVYTVIDLPWPVKDRDMVL--RSTTE 111 (195)
T ss_pred EEEEEEeCCHHHHHHHHhh--hHhHHHHHhhcceEEEee----cCCC-C---cEEEEEEEecccccCCceEEE--EEEEE
Confidence 4567799999999999864 445555554433333211 1111 1 2233332 1112233443221 11222
Q ss_pred ecCCCCeEEEEEEEeeCCCCCCC----eEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHH
Q 009822 418 LSPDKKIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNK 485 (524)
Q Consensus 418 ~~~~~~~~vv~~~~~~~dVPygd----~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~ 485 (524)
...++..++|.......++|-.. .+.....|.|++.++++|+|.....+.+..+ +.+.+|...+...
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~ 182 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS-IPGWLANAFAKDA 182 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHH
Confidence 22223455555543333345332 3566788999999999999999998888543 5566655554443
No 149
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=92.91 E-value=5.7 Score=37.13 Aligned_cols=150 Identities=14% Similarity=0.167 Sum_probs=84.6
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcce-EeccccccCCCCCcEEEEEEEeeccC-CCCCceeeEeEEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNL-VMGQWHAADEYDGQVREVAFRSLCKS-PIYPRDTAMTESQHA 416 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i-~~~~W~~~~~~~~~~R~~~y~~~~~~-~~gpk~~~~~~~Q~~ 416 (524)
-+..+++.++.+++..++.| .....++........+ ..- ++ + .+-+-+...... |+.|+..-... +.
T Consensus 48 k~~~~v~~~~~~~~~~~~~d-~~~r~~Wd~~~~~~~~ie~~-----~~-~--~~i~~~~~~~~~~p~~~RDfv~~r--~~ 116 (206)
T smart00234 48 RAVGVVPMVCADLVEELMDD-LRYRPEWDKNVAKAETLEVI-----DN-G--TVIYHYVSKFVAGPVSPRDFVFVR--YW 116 (206)
T ss_pred EEEEEEecChHHHHHHHHhc-ccchhhCchhcccEEEEEEE-----CC-C--CeEEEEEEecccCcCCCCeEEEEE--EE
Confidence 34678888998877766654 3333333322222221 111 11 1 122223333322 56665422221 11
Q ss_pred EecCCCCeEEEEEEEeeCCCCC-CCe---EEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPF-GSY---FEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVEL 492 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPy-gd~---F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~ 492 (524)
....++.++++..+...+.+|- ..+ ......|+|++.+++.|++.....+...+| +-+.++...+.......++.
T Consensus 117 ~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~ 195 (206)
T smart00234 117 RELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKT 195 (206)
T ss_pred EEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHH
Confidence 2233444555544555566663 232 345688999999988999999999999876 45777777666676677776
Q ss_pred HHHHHHHH
Q 009822 493 MLETARSY 500 (524)
Q Consensus 493 ~~~~~~~~ 500 (524)
+.+.+++.
T Consensus 196 ~~~~~~~~ 203 (206)
T smart00234 196 WVATLQKH 203 (206)
T ss_pred HHHHHHHH
Confidence 66655544
No 150
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.27 E-value=0.69 Score=41.86 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=50.3
Q ss_pred CCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEec--CC--CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009822 33 GTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (524)
Q Consensus 33 g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v~--~~--~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~ 102 (524)
..++-||.+.+ ++... .|....-+..+.|||...|++. +. ...|.|+|||.+..++...+|.+.++|-..
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45778888765 33322 4555554567889999999864 33 455999999987655677999999998765
No 151
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.98 E-value=1.3 Score=39.90 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=56.9
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEe--cCC--CcEEEEEEEEcC
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~v~v~d~d 84 (524)
.++|.+....++...+ ....+-|+.+.+ ++... .|.......++.|||...|++ .+. ...|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4667777777765421 234566676654 33321 233333336799999999985 333 455999999987
Q ss_pred CCC--CCceeEEEEEEcccC
Q 009822 85 IIW--KSTVLGSVIVTVESE 102 (524)
Q Consensus 85 ~~~--~d~~iG~~~i~l~~~ 102 (524)
..+ ++..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 457899999998875
No 152
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.93 E-value=5.4 Score=34.98 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE---Eeeeee-cCCCCCccccEEEEEec----C-----CCcEEE
Q 009822 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII 77 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~~T~~~-~~t~nP~W~e~f~f~v~----~-----~~~~L~ 77 (524)
.....+.+++.+..+++. .....|+....+... ..|... ...-.-.|++.|.+.+. . .+..+.
T Consensus 4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 345678899999998876 234455555555443 344433 23455789999988752 1 123488
Q ss_pred EEEEEcCCCCCCceeEEEEEEcccC-C---CcccEEEEecCC-CCeeEEEEEEEecccc
Q 009822 78 VTIYDWDIIWKSTVLGSVIVTVESE-G---QTGAVWYTLDSP-SGQVCLHIKTIKLPVN 131 (524)
Q Consensus 78 v~v~d~d~~~~d~~iG~~~i~l~~~-~---~~~~~w~~L~~~-~G~i~~~l~~~~~~~~ 131 (524)
|.|+....-++...+|.+.|+|++. . .....-++|... .....+.+.+....+.
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR 138 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence 9998875333336899999999987 2 233455666553 4444455544444433
No 153
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=91.88 E-value=4.3 Score=38.78 Aligned_cols=143 Identities=11% Similarity=0.224 Sum_probs=74.5
Q ss_pred eeeEE-ecCHHHHHHHHcCCCCchHHHHHHHcCC-cceEeccccccCCCCCcEEEEEEE-eeccCCCCCceeeEeEEEEE
Q 009822 340 YNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKD-SNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 416 (524)
Q Consensus 340 ~~~~~-~~s~~~lf~~lf~d~s~f~~~~~~~~~~-~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 416 (524)
...++ ++|++.+|+++.+ ..+..++-..... ..+. ... ++ . .+.|. ...-.|+.++.--.. ...
T Consensus 51 ~~~~~~~~s~e~~~~~l~D--~~~r~~Wd~~~~e~~~ie--~~d--~~----~-~i~y~~~~~P~pvs~RDfV~~--r~~ 117 (222)
T cd08871 51 VSAIFPDVPAETLYDVLHD--PEYRKTWDSNMIESFDIC--QLN--PN----N-DIGYYSAKCPKPLKNRDFVNL--RSW 117 (222)
T ss_pred EEEEeCCCCHHHHHHHHHC--hhhhhhhhhhhceeEEEE--EcC--CC----C-EEEEEEeECCCCCCCCeEEEE--EEE
Confidence 34556 6899999998864 3333333222221 1222 111 11 1 22332 211134666542221 122
Q ss_pred EecCCCCeEEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVEL 492 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~ 492 (524)
... ++.++++..+...+++|-..-+ .....|+|++.++++|++...+.+...++ +-+.+|...+.......++.
T Consensus 118 ~~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~ 195 (222)
T cd08871 118 LEF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKK 195 (222)
T ss_pred EeC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHH
Confidence 222 3556667777667788866542 23456899999888999999999888764 23333444333333333333
Q ss_pred HHHHH
Q 009822 493 MLETA 497 (524)
Q Consensus 493 ~~~~~ 497 (524)
+-+.+
T Consensus 196 l~k~~ 200 (222)
T cd08871 196 LHKAA 200 (222)
T ss_pred HHHHH
Confidence 33333
No 154
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.15 E-value=2.9 Score=39.08 Aligned_cols=146 Identities=13% Similarity=0.217 Sum_probs=83.5
Q ss_pred eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEE-eeccC--CCCCceeeEeEEEEE
Q 009822 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKS--PIYPRDTAMTESQHA 416 (524)
Q Consensus 340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~--~~gpk~~~~~~~Q~~ 416 (524)
+..+++.++.+++..++.+.. .+...... ..--+..++ + ..+.|. ..... |+.|+..-+.. ..
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~----~Wd~~~~~----~~~le~~~~-~---~~i~~~~~~~~~~~p~~~RDfv~~~--~~ 115 (206)
T PF01852_consen 50 AEGVVPASPEQVVEDLLDDRE----QWDKMCVE----AEVLEQIDE-D---TDIVYFVMKSPWPGPVSPRDFVFLR--SW 115 (206)
T ss_dssp EEEEESSCHHHHHHHHHCGGG----HHSTTEEE----EEEEEEEET-T---EEEEEEEEE-CTTTTSSEEEEEEEE--EE
T ss_pred EEEEEcCChHHHHHHHHhhHh----hcccchhh----heeeeecCC-C---CeEEEEEecccCCCCCCCcEEEEEE--EE
Confidence 467889999999999988533 22111111 111111111 1 223332 22222 55555322222 22
Q ss_pred EecCCCCeEEEEEEEeeCCCCC--CCeEEE---EEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPF--GSYFEI---HGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVE 491 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPy--gd~F~v---~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~ 491 (524)
....++.++++..+...+..|- .++-++ ...|+|++.+++.|++.....++...|.. +.++..-+...+.+.++
T Consensus 116 ~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP-~~~~n~~~~~~~~~~~~ 194 (206)
T PF01852_consen 116 RKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIP-SWLVNMVVKSQPPNFLK 194 (206)
T ss_dssp EECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSH-HHHHHHHHHHHHHHHHH
T ss_pred EEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCCh-HHHHHHHHHHhHHHHHH
Confidence 2245666777777777788774 455443 36799999999999999999998877542 44444445556666666
Q ss_pred HHHHHHHHH
Q 009822 492 LMLETARSY 500 (524)
Q Consensus 492 ~~~~~~~~~ 500 (524)
.+.+.++++
T Consensus 195 ~~~~~~~~~ 203 (206)
T PF01852_consen 195 NLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 666655543
No 155
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=90.95 E-value=5.8 Score=37.56 Aligned_cols=146 Identities=10% Similarity=0.076 Sum_probs=79.1
Q ss_pred eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccC---CCCCceeeEeEEEEE
Q 009822 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS---PIYPRDTAMTESQHA 416 (524)
Q Consensus 340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~---~~gpk~~~~~~~Q~~ 416 (524)
++.++++|+++++..+|.|-.. ..+. +-.+..-......+..+. +.|..-... ++.++..-. .+..
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~-~~~W-------~~~~~~~~vl~~id~~~~-i~y~~~~p~p~~~vs~RD~V~--~~~~ 121 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQ-MGEW-------NPNVKEVKILQRIGKDTL-ITHEVAAETAGNVVGPRDFVS--VRCA 121 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhh-hcee-------cccchHHHHHhhcCCCce-EEEEEeccCCCCccCccceEE--EEEE
Confidence 6889999999999888875211 1111 101111111111111122 333321111 255554222 2233
Q ss_pred EecCCCCeEEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEV 490 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~ 490 (524)
... ++.++++......+..|-..-| ...+.|.|++.++ ++|++...+.+...++ +-+.++.+...+...+.+
T Consensus 122 ~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~ 199 (209)
T cd08905 122 KRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFA 199 (209)
T ss_pred EEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHH
Confidence 333 3455666666555666543333 3668899999965 7899999988888665 556666666666666666
Q ss_pred HHHHHHHH
Q 009822 491 ELMLETAR 498 (524)
Q Consensus 491 ~~~~~~~~ 498 (524)
+.+-+.+.
T Consensus 200 ~~Lr~~~~ 207 (209)
T cd08905 200 NHLRQRMA 207 (209)
T ss_pred HHHHHHHh
Confidence 55555443
No 156
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.99 E-value=1.8 Score=39.62 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=61.2
Q ss_pred ceEEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeec----CCCCCccccEEEEEec--CC--CcEEEE
Q 009822 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP----GSRYPMWGEEFNFSVD--EL--PVQIIV 78 (524)
Q Consensus 13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~----~t~nP~W~e~f~f~v~--~~--~~~L~v 78 (524)
...+.|+|..+.+++........+-|+.+.+ +.+.. .|+... -...+.|||...|++. +. ...|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3567899999999987664456788888765 43322 333221 1235779999999863 33 455999
Q ss_pred EEEEcCCCC---------CCceeEEEEEEcccC
Q 009822 79 TIYDWDIIW---------KSTVLGSVIVTVESE 102 (524)
Q Consensus 79 ~v~d~d~~~---------~d~~iG~~~i~l~~~ 102 (524)
+||+....+ .+..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 346899999888765
No 157
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=89.92 E-value=6.1 Score=35.42 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCceEEEEEEEEeecCcCCCC--CCCCCcEEE--EEECCeEEeeeeecCCCCCccccEEEEEecCC--------------
Q 009822 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAI--ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-------------- 72 (524)
Q Consensus 11 ~~~~~L~V~vi~A~~L~~~d~--~g~~dpyv~--v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-------------- 72 (524)
+...-|+++|..++-...--. .+..+.-.. +.+++++++|+.+..+.+|.++|.|.|++...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 556778899998864432211 134444444 44578999999999999999999999998532
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009822 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (524)
Q Consensus 73 ~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~ 102 (524)
...+.+.|---|..+...++|.-.++...+
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 234777777767666667888877777665
No 158
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=89.22 E-value=8.9 Score=35.00 Aligned_cols=122 Identities=14% Similarity=0.189 Sum_probs=66.4
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (524)
-...++++|+++++++++.. .....+........+ -..-+.+.......|..| .|+.|+..-+... ...
T Consensus 42 k~~~~i~~~~~~v~~~l~d~--~~~~~w~~~~~~~~v-----l~~~~~~~~i~~~~~~~p--~p~~~Rdfv~~~~--~~~ 110 (193)
T cd00177 42 KAEGVIPASPEQVFELLMDI--DLRKKWDKNFEEFEV-----IEEIDEHTDIIYYKTKPP--WPVSPRDFVYLRR--RRK 110 (193)
T ss_pred EEEEEECCCHHHHHHHHhCC--chhhchhhcceEEEE-----EEEeCCCeEEEEEEeeCC--CccCCccEEEEEE--EEE
Confidence 45788999999999999862 222222111111111 111110111111223333 3466664333222 222
Q ss_pred cCCCCeEEEEEEEeeCCCCCC-CeEEEEE---EEEEEeeCCCCeEEEEEEEEEEeee
Q 009822 419 SPDKKIFVFETVQQAHDVPFG-SYFEIHG---RWHLETIAENSSTIDIKVGAHFKKW 471 (524)
Q Consensus 419 ~~~~~~~vv~~~~~~~dVPyg-d~F~v~~---r~~i~~~~~~~c~l~v~~~V~f~K~ 471 (524)
..++.++++..+...+.+|-. ++-+... -|+|++.++++|++...+.+....+
T Consensus 111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 224566666665554446654 5445444 4999999889999999999988765
No 159
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.95 E-value=14 Score=31.76 Aligned_cols=138 Identities=9% Similarity=0.017 Sum_probs=71.5
Q ss_pred eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEecC
Q 009822 341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420 (524)
Q Consensus 341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~ 420 (524)
..++++|++++|+++-+ ..-+.++.-.....+ + ..+ +. ..+.+... ++|........=++....
T Consensus 6 ~~~i~a~~e~v~~~l~D--~~~~~~w~p~~~~~~-----~--~~~-~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~ 69 (144)
T cd05018 6 EFRIPAPPEEVWAALND--PEVLARCIPGCESLE-----K--IGP-NE--YEATVKLK----VGPVKGTFKGKVELSDLD 69 (144)
T ss_pred EEEecCCHHHHHHHhcC--HHHHHhhccchhhcc-----c--cCC-Ce--EEEEEEEE----EccEEEEEEEEEEEEecC
Confidence 56799999999998854 333333332111111 1 111 11 11222211 244322222111222222
Q ss_pred CCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHH
Q 009822 421 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSY 500 (524)
Q Consensus 421 ~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~ 500 (524)
.+..+++.... .+-+.......+|.|++. +++|+|.....+.+.. +++.+...-.....++...+.++.+++.
T Consensus 70 ~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 70 PPESYTITGEG----KGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred CCcEEEEEEEE----cCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456665432 111456788999999998 6789999999988754 3444444444445555556666655554
Q ss_pred H
Q 009822 501 I 501 (524)
Q Consensus 501 l 501 (524)
+
T Consensus 143 ~ 143 (144)
T cd05018 143 I 143 (144)
T ss_pred h
Confidence 3
No 160
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=88.82 E-value=11 Score=35.71 Aligned_cols=151 Identities=10% Similarity=0.112 Sum_probs=83.9
Q ss_pred eeeeeEE-ecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822 338 GIYNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 416 (524)
Q Consensus 338 ~~~~~~~-~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~ 416 (524)
.....+| ++|++.|++++.. ..+..+.........+. +..++ ...+.+-|....--|+.++..-.. .+.
T Consensus 52 ~k~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~l----e~~~~--~~~~i~y~~~~~P~P~s~RD~V~~--r~~ 121 (209)
T cd08870 52 YLVRGVFEDCTPELLRDFYWD--DEYRKKWDETVIEHETL----EEDEK--SGTEIVRWVKKFPFPLSDREYVIA--RRL 121 (209)
T ss_pred EEEEEEEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEE----EecCC--CCcEEEEEEEECCCcCCCceEEEE--EEE
Confidence 3456778 6799999999976 34444433332222221 11111 012333333333235666643222 222
Q ss_pred EecCCCCeEEEEEEEeeCCCCCCCeEE---EEEEEEEEee--CCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETI--AENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVE 491 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPygd~F~---v~~r~~i~~~--~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~ 491 (524)
....++.++++.....-+.+|-.+.-+ ...+|+|++. ++++|++.+.+...= +..+-+.++...+..+....++
T Consensus 122 ~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~ 200 (209)
T cd08870 122 WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLK 200 (209)
T ss_pred EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHH
Confidence 333245555555555556788653322 4678999998 777888888777753 4445666666666777666666
Q ss_pred HHHHHHHH
Q 009822 492 LMLETARS 499 (524)
Q Consensus 492 ~~~~~~~~ 499 (524)
.+-+.+.+
T Consensus 201 ~l~~a~~~ 208 (209)
T cd08870 201 KLENALRK 208 (209)
T ss_pred HHHHHHhc
Confidence 66655543
No 161
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=87.74 E-value=20 Score=33.91 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=77.2
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEe--e-ccCCCCCceeeEeEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS--L-CKSPIYPRDTAMTESQH 415 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~--~-~~~~~gpk~~~~~~~Q~ 415 (524)
-.+.++++|++.||..+|.|-. .. ..++-.+..=..-...+...+ +.|.. | ...|+.++.-- ....
T Consensus 52 k~~~~v~~~~~~l~~~ll~D~~-~~-------~~W~~~~~~~~vi~~~~~~~~-i~Y~v~~p~~~~pv~~RDfV--~~r~ 120 (209)
T cd08906 52 ILKAFMQCPAELVYQEVILQPE-KM-------VLWNKTVSACQVLQRVDDNTL-VSYDVAAGAAGGVVSPRDFV--NVRR 120 (209)
T ss_pred EEEEEEcCCHHHHHHHHHhChh-hc-------cccCccchhhhheeeccCCcE-EEEEEccccccCCCCCCceE--EEEE
Confidence 5688899999999987766422 11 111111111111011011122 34532 2 11234444322 1122
Q ss_pred EEecCCCCeEEEEEEEeeCCCCCCCe-EEEE---EEEEEEe--eCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822 416 AVLSPDKKIFVFETVQQAHDVPFGSY-FEIH---GRWHLET--IAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE 489 (524)
Q Consensus 416 ~~~~~~~~~~vv~~~~~~~dVPygd~-F~v~---~r~~i~~--~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~ 489 (524)
.... ++.++.+..++..+.+|=..- -+++ +.|.+.. .++++|++...+.+...++ +=+.+|.+...+...+.
T Consensus 121 ~~~~-~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~ 198 (209)
T cd08906 121 IERR-RDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEF 198 (209)
T ss_pred EEec-CCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHH
Confidence 3333 334566666666566664443 3344 4455665 4677899988888887664 56777777777776666
Q ss_pred HHHHHHHHH
Q 009822 490 VELMLETAR 498 (524)
Q Consensus 490 ~~~~~~~~~ 498 (524)
++.+-+.+.
T Consensus 199 ~~~LR~~~~ 207 (209)
T cd08906 199 ASHLRQRIR 207 (209)
T ss_pred HHHHHHHHh
Confidence 666655554
No 162
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.04 E-value=20 Score=31.37 Aligned_cols=136 Identities=9% Similarity=0.062 Sum_probs=69.3
Q ss_pred eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCC--CCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822 341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEY--DGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (524)
Q Consensus 341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~--~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (524)
+.++++|++.+|.+|-+ ..-+. .|.+.-+. ....+ +|..-++..+||-.....-.-++..
T Consensus 4 ~~~v~a~pe~vw~~l~D--~~~~~--------------~~~pg~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~ 65 (146)
T cd07823 4 EFTVPAPPDRVWALLLD--IERVA--------------PCLPGASLTEVEGDD--EYKGTVKVKLGPISASFKGTARLLE 65 (146)
T ss_pred eEEecCCHHHHHHHhcC--HHHHH--------------hcCCCceeccccCCC--eEEEEEEEEEccEEEEEEEEEEEEe
Confidence 35689999999998843 22222 33331100 00012 2222222234444333322212332
Q ss_pred cC-CCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEee--eceeeeeeeccHHHHHHHHHHHHHH
Q 009822 419 SP-DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKK--WCVIQFKIKTGAVNKYKKEVELMLE 495 (524)
Q Consensus 419 ~~-~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K--~t~~K~~Ie~~~~~~~~~~~~~~~~ 495 (524)
.. ....+.+.- .-.+.+-+....+...|.++. .+++|+|.+...+.+.. ..+++.+|.+ ..++.++++++
T Consensus 66 ~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~----~~~~~~~~~~~ 138 (146)
T cd07823 66 DDEAARRAVLEA--TGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGD----VAGRLLAQFAA 138 (146)
T ss_pred ccCCCcEEEEEE--EEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHH----HHHHHHHHHHH
Confidence 22 334555432 223345455668889999998 55689999999998765 3344444444 33444555555
Q ss_pred HHHHHH
Q 009822 496 TARSYI 501 (524)
Q Consensus 496 ~~~~~l 501 (524)
.+++.+
T Consensus 139 ~l~~~~ 144 (146)
T cd07823 139 NLEARL 144 (146)
T ss_pred HHHHHh
Confidence 554443
No 163
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=86.96 E-value=18 Score=30.74 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=65.8
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (524)
....++++|++++|+++-.- .-+..+........+...++ . .+..|.+.+. .| . . ..+++..
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~--~~~~~w~~~~~~~~~~~~~~----~-~g~~~~~~~~------~g-~--~--~~~~i~~ 65 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDF--GGLHKWHPAVASCELEGGGP----G-VGAVRTVTLK------DG-G--T--VRERLLA 65 (140)
T ss_pred EEEEEECCCHHHHHHHHhCc--CchhhhccCcceEEeecCCC----C-CCeEEEEEeC------CC-C--E--EEEEehh
Confidence 45678999999999999753 22233332222222211111 1 2334433332 22 1 1 1233333
Q ss_pred cCCC-CeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHH
Q 009822 419 SPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETA 497 (524)
Q Consensus 419 ~~~~-~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~ 497 (524)
..+. ..+.+.... .+.|+. .....|.|+..++++|+|.......-... ....-....+.+.++..++.+
T Consensus 66 ~~~~~~~i~~~~~~--~~~~~~---~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~L 135 (140)
T cd07821 66 LDDAERRYSYRIVE--GPLPVK---NYVATIRVTPEGDGGTRVTWTAEFDPPEG-----LTDELARAFLTGVYRAGLAAL 135 (140)
T ss_pred cCccCCEEEEEecC--CCCCcc---cceEEEEEEECCCCccEEEEEEEEecCCC-----cchHHHHHHHHHHHHHHHHHH
Confidence 2222 455554332 124432 45788999999887888776665443322 222222334444455555555
Q ss_pred HHHH
Q 009822 498 RSYI 501 (524)
Q Consensus 498 ~~~l 501 (524)
++++
T Consensus 136 ~~~~ 139 (140)
T cd07821 136 KAAL 139 (140)
T ss_pred HHhh
Confidence 5443
No 164
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=86.77 E-value=1.2 Score=35.96 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=34.2
Q ss_pred eeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEE
Q 009822 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL 241 (524)
Q Consensus 191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~ 241 (524)
-.|++|+|.++|||.-..-.....+.||+++|..++...+.+ ..+-+|+.
T Consensus 36 q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l 85 (89)
T PF11605_consen 36 QNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL 85 (89)
T ss_dssp SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred cCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence 479999999999998654333447899999999996655543 33444443
No 165
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=86.60 E-value=23 Score=31.62 Aligned_cols=142 Identities=12% Similarity=0.120 Sum_probs=83.2
Q ss_pred eeeeeEEecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 416 (524)
Q Consensus 338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~ 416 (524)
...+.+.++|+++||+++.. ...++.+.. ...+.-++..++|.. ++..|.++|.. -|| . -..+|++
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~----gGSIk~~~f~~-----~~~-~--~~~Kekv 72 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGP----GGSIKKWTFGP-----GGP-F--KYVKEKV 72 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSST----TT-EEEEEEET-----TSS-E--EEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCC----CCeEEEEEecC-----CCC-c--ceeEEEE
Confidence 34577889999999999876 445555554 445666677788865 35789999884 233 2 2335677
Q ss_pred EecCCC-CeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeecc-HHHHHHHHHHHHH
Q 009822 417 VLSPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTG-AVNKYKKEVELML 494 (524)
Q Consensus 417 ~~~~~~-~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~-~~~~~~~~~~~~~ 494 (524)
...++. ..+.. +.---| +.+++..-.....+.+.++++|.++.. ++|.+- -+.. .-+...+.+..++
T Consensus 73 e~~D~~~~~~~y--~viEGd-~l~~~~~~~~~~~~~~~~~g~~v~k~t--~~Ye~~------~~~~~~p~~~~~~~~~~~ 141 (151)
T PF00407_consen 73 EAIDEENKTITY--TVIEGD-VLGDYKSFKSTIQKIPKGDGGCVVKWT--IEYEKK------GEDVPPPEKYLDFAVGMF 141 (151)
T ss_dssp EEEETTTTEEEE--EEEEET-TGTTTEEEEEEEEEEEETTSCEEEEEE--EEEEES------STSCHHHHHHHHHHHHHH
T ss_pred EeecCCCcEEEE--EEEecc-ccccEEEEEEEEEecCCCCCceEEEEE--EEEEec------CCCCCCcHHHHHHHHHHH
Confidence 754332 33333 222234 334444445555555666667765544 445441 1222 3556666688888
Q ss_pred HHHHHHHhh
Q 009822 495 ETARSYIKI 503 (524)
Q Consensus 495 ~~~~~~l~~ 503 (524)
+.++.+|-+
T Consensus 142 K~ieayLla 150 (151)
T PF00407_consen 142 KAIEAYLLA 150 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887754
No 166
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.42 E-value=7.2 Score=35.94 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=41.7
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE---eeeeecCCCCCccccEEEEEec--CC--CcEEEEEEEEcC
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR---FSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWD 84 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~---~T~~~~~t~nP~W~e~f~f~v~--~~--~~~L~v~v~d~d 84 (524)
.++|+|..+..+ ..+.......||.+.+ +.... +|....-+.++.|||...|++. +. ...|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 466777777633 2222222335555543 33322 4555555667999999999853 33 456999999974
No 167
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=86.12 E-value=22 Score=33.18 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=64.1
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (524)
-.+.+++.++++++.+++.. ++.+|-.+..++.-+..+....-+-|..+.-.|+.++..-.... ....
T Consensus 47 K~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~-~~~~ 114 (197)
T cd08869 47 RASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRT-WRTD 114 (197)
T ss_pred EEEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEE-EEec
Confidence 35788999999999888632 23333333233221111111222334433323444443221111 1222
Q ss_pred cCCCCeEEEEEEEee-CCCCCCC---eEEEEEEEEEEeeCCCCeEEEEEEEEEEeee
Q 009822 419 SPDKKIFVFETVQQA-HDVPFGS---YFEIHGRWHLETIAENSSTIDIKVGAHFKKW 471 (524)
Q Consensus 419 ~~~~~~~vv~~~~~~-~dVPygd---~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~ 471 (524)
..++.+++...+..- ..+|- + .+...+.|.|++.++++|+|...+++...++
T Consensus 115 ~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 115 LPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred CCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 334444444333322 25554 4 3556688999999989999999999998774
No 168
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.11 E-value=8.6 Score=33.87 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=39.3
Q ss_pred eeeeecCC-CCCccccEEEEEec--C--CCcEEEEEEEEcCCCCCC----ceeEEEEEEcccC
Q 009822 49 FSSMVPGS-RYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE 102 (524)
Q Consensus 49 ~T~~~~~t-~nP~W~e~f~f~v~--~--~~~~L~v~v~d~d~~~~d----~~iG~~~i~l~~~ 102 (524)
.|....-+ ..+.|+|.+.|++. + ....|.|+||..+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 45555555 78999999999863 3 345699999998765555 6899999998876
No 169
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=84.19 E-value=22 Score=33.58 Aligned_cols=143 Identities=10% Similarity=0.119 Sum_probs=74.4
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeec---cCCCCCceeeEeEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC---KSPIYPRDTAMTESQH 415 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~Q~ 415 (524)
-++.+++++++++|+.++... . +..+|-.+..-...+.-+..+ .|.|..-- ...++|+.-- ..+.
T Consensus 49 k~egvi~~~~e~v~~~l~~~e--~-------r~~Wd~~~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV--~vr~ 116 (204)
T cd08904 49 RVEGIIPESPAKLIQFMYQPE--H-------RIKWDKSLQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFV--DLVH 116 (204)
T ss_pred EEEEEecCCHHHHHHHHhccc--h-------hhhhcccccceeeEEEeCCCc-EEEEEecccccCCcccCceEE--EEEE
Confidence 468899999999999987521 1 121121111111110001111 24443221 1126676422 2222
Q ss_pred EEecCCCCeEEEEEEEeeCCCC-CCCe---EEEEEEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822 416 AVLSPDKKIFVFETVQQAHDVP-FGSY---FEIHGRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE 489 (524)
Q Consensus 416 ~~~~~~~~~~vv~~~~~~~dVP-ygd~---F~v~~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~ 489 (524)
.....++.+++...++.-+..| =.++ +..-+-|++.+..+ +.|++.....+...+| +-+++|++.--..+.+.
T Consensus 117 ~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~-lP~~vv~~~~~~~~~~f 195 (204)
T cd08904 117 IKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN-LSRSVIEKTMPTNLVNL 195 (204)
T ss_pred EEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC-CCHHHHHHHhHHHHHHH
Confidence 2222344445545554445544 2333 34446799999865 4799999988777654 66777776555555555
Q ss_pred HHHHH
Q 009822 490 VELML 494 (524)
Q Consensus 490 ~~~~~ 494 (524)
+..+-
T Consensus 196 ~~~~~ 200 (204)
T cd08904 196 ILDAK 200 (204)
T ss_pred HHHHH
Confidence 54443
No 170
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=81.90 E-value=6.7 Score=30.92 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=37.1
Q ss_pred eeeEEEeecce--EEEEeccCcceeEEEEeccccccccccccceecC--cEEEEEec
Q 009822 191 YHGRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRM 243 (524)
Q Consensus 191 ~~Gr~yit~~~--~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~--~i~i~~~~ 243 (524)
..|.|||++.+ +-+--+--+-...+.||+.+|+..+-.+.. .+ -++|..+.
T Consensus 12 ~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~--s~Kv~Lki~~~~ 66 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG--SPKVMLKIVLKD 66 (79)
T ss_dssp EEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT--SSTEEEEEEETT
T ss_pred CCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC--CcceEEEEEEec
Confidence 45999999999 888875444444899999999998877654 33 56777754
No 171
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.85 E-value=6.5 Score=42.27 Aligned_cols=92 Identities=22% Similarity=0.343 Sum_probs=65.8
Q ss_pred ccccccccccCcccce-EEeeeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEecccccccccccccee-cC--cE
Q 009822 162 PGPLQTIFNLLPDEFV-ELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI-NP--AI 237 (524)
Q Consensus 162 ~~~f~~~F~lp~~e~l-~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~-~~--~i 237 (524)
+..+...|.+-++|.+ -..|-|.+.- ...|.++||+-.|+|.+...+..-.+.+||.=|..|+|..++.- .| .|
T Consensus 27 ~~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L 104 (717)
T KOG4471|consen 27 DENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGL 104 (717)
T ss_pred cccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeE
Confidence 3345666765566544 3446666653 78899999999999999877777788999999999999875532 23 77
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeEEEeeee
Q 009822 238 TIILRMGAGGHGVPPLGSPDGRVRYKFASFW 268 (524)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~ 268 (524)
+|.+++- ...++-|..+.
T Consensus 105 ~i~CKDm-------------r~lR~~fk~~~ 122 (717)
T KOG4471|consen 105 EITCKDM-------------RNLRCAFKQEE 122 (717)
T ss_pred EEEeccc-------------cceeeecCccc
Confidence 8887642 45566666653
No 172
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=81.45 E-value=17 Score=35.11 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=46.4
Q ss_pred CeEEEEEEEeeCCCCCC-CeEEEEE---------------EEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHH
Q 009822 423 KIFVFETVQQAHDVPFG-SYFEIHG---------------RWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKY 486 (524)
Q Consensus 423 ~~~vv~~~~~~~dVPyg-d~F~v~~---------------r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~ 486 (524)
.++++..+..-+++|=. ++-++.. .|.+++ .+.+|++...+.++--+| +=.++|..-+..+.
T Consensus 136 ~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~-iP~wvvn~~~k~~~ 213 (235)
T cd08872 136 TWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW-APASVLRAVYKREY 213 (235)
T ss_pred eEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC-ccHHHHHHHHHhhc
Confidence 34667777677777765 5666654 244555 456888888888877554 34455555555554
Q ss_pred HHHHHHHHHHHHHHHh
Q 009822 487 KKEVELMLETARSYIK 502 (524)
Q Consensus 487 ~~~~~~~~~~~~~~l~ 502 (524)
-+.++.+=..+.+..|
T Consensus 214 P~~l~~~~~~~~~~~~ 229 (235)
T cd08872 214 PKFLKRFTSYVQEKTK 229 (235)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 4444444444444433
No 173
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=81.35 E-value=35 Score=32.21 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=74.0
Q ss_pred eeeEEe-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822 340 YNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (524)
Q Consensus 340 ~~~~~~-~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (524)
...+|+ +|++.|++++.. ..+..+....... -+.. ..+ + .+.+-+....--|+.++..-+... ....
T Consensus 53 ~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~-~~~~-----~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~-~~~~ 120 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMD--LEYRKQWDQYVKE-LYEK-----ECD-G--ETVIYWEVKYPFPLSNRDYVYIRQ-RRDL 120 (207)
T ss_pred EEEEEcCCCHHHHHHHHhC--HHHHHHHHHHHHh-heee-----cCC-C--CEEEEEEEEcCCCCCCceEEEEEE-eccc
Confidence 367887 899999999965 4443333322221 1111 111 1 233333343334566665432222 1222
Q ss_pred cCCCC-e-EEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHH
Q 009822 419 SPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVEL 492 (524)
Q Consensus 419 ~~~~~-~-~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~ 492 (524)
..++. . +++.....-+.+|-.+-| .....|+|++.++++|++...+...-.+ .+=++++..-+.++....++.
T Consensus 121 ~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~~~l~~ 199 (207)
T cd08910 121 DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVPNFLKD 199 (207)
T ss_pred cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-cchHHHHHHHHHHhhHHHHHH
Confidence 22333 3 334444455677765544 3678899998888889999888887532 233344444444444444443
Q ss_pred HH
Q 009822 493 ML 494 (524)
Q Consensus 493 ~~ 494 (524)
+-
T Consensus 200 l~ 201 (207)
T cd08910 200 MQ 201 (207)
T ss_pred HH
Confidence 33
No 174
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=80.22 E-value=5.6 Score=43.49 Aligned_cols=82 Identities=15% Similarity=0.309 Sum_probs=59.0
Q ss_pred eeeeeeeeccceeeEEEee----cceEEEEeccC------------cceeEEEEeccccccccccccce-----------
Q 009822 180 SYSCVIERSFLYHGRMYVS----AWHICFHSNAF------------SRQMKVIIPIGDIDEIQRSQHAF----------- 232 (524)
Q Consensus 180 ~~~c~l~~~~~~~Gr~yit----~~~~cF~s~~~------------g~~~~~~i~~~~i~~i~k~~~~~----------- 232 (524)
.|.|-|..+ .|.+||+ .=.|||.+... .....+.||+.||.+++|..+..
T Consensus 520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~ 596 (642)
T PF11696_consen 520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL 596 (642)
T ss_pred eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence 478877653 4999999 34688987511 23556999999999999987652
Q ss_pred ----ecCcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009822 233 ----INPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (524)
Q Consensus 233 ----~~~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 279 (524)
+..++.|. ++ .| ..|.++-...||+.|+-|-.
T Consensus 597 g~kEv~DGL~I~g~~--------------~g-~~y~lTA~~~RDeLFNRLiA 633 (642)
T PF11696_consen 597 GEKEVVDGLVIVGDE--------------PG-QEYHLTAMPRRDELFNRLIA 633 (642)
T ss_pred CCcccccceEEeccC--------------CC-CEEEEEecchHHHHHHHHHh
Confidence 12255555 43 34 58999999999999987764
No 175
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.75 E-value=24 Score=32.95 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=39.5
Q ss_pred EEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCC-CC---CceeEEEEEEccc
Q 009822 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-WK---STVLGSVIVTVES 101 (524)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~-~~---d~~iG~~~i~l~~ 101 (524)
..+|-+.....+|.|+|++.+.+.. ....|.|++++.... .+ ...+|.+.++|-.
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~ 115 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ 115 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence 3467777788999999999999853 355699999875421 12 2468888888764
No 176
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=79.73 E-value=32 Score=32.48 Aligned_cols=119 Identities=12% Similarity=0.134 Sum_probs=65.5
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (524)
-...+++.++.++..++..+ ..-|...+ .....+..- +..+..+-|....--|+.++..-+... ....
T Consensus 55 r~~~~i~a~~~~vl~~lld~-~~~Wd~~~--~e~~vIe~l--------d~~~~I~Yy~~~~PwP~~~RD~V~~Rs-~~~~ 122 (204)
T cd08908 55 RTTIEVPAAPEEILKRLLKE-QHLWDVDL--LDSKVIEIL--------DSQTEIYQYVQNSMAPHPARDYVVLRT-WRTN 122 (204)
T ss_pred EEEEEeCCCHHHHHHHHHhh-HHHHHHHh--hheEeeEec--------CCCceEEEEEccCCCCCCCcEEEEEEE-EEEe
Confidence 45778999999999999765 22122211 111122211 112233333322212443333221111 2222
Q ss_pred cCCCCeEEEEEEEeeCCCCCCCeEE---EEEEEEEEeeCCCCeEEEEEEEEEEee
Q 009822 419 SPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVGAHFKK 470 (524)
Q Consensus 419 ~~~~~~~vv~~~~~~~dVPygd~F~---v~~r~~i~~~~~~~c~l~v~~~V~f~K 470 (524)
..++.+.++..+..-..+|-. .-+ +.++|.|++.++++|+|..-+++...+
T Consensus 123 ~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG 176 (204)
T cd08908 123 LPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRG 176 (204)
T ss_pred CCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCC
Confidence 344555555554666778844 433 478999999999999999999998765
No 177
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=79.53 E-value=9.1 Score=35.38 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=32.8
Q ss_pred eeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCCCC-C--ceeEEEEEEcccC
Q 009822 49 FSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK-S--TVLGSVIVTVESE 102 (524)
Q Consensus 49 ~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~~~-d--~~iG~~~i~l~~~ 102 (524)
.|.+..++.+|.|+|++.+.+.. ....|.|++++...-.+ + ..+|.+.++|.+.
T Consensus 62 ~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~ 121 (184)
T PF14429_consen 62 YSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDN 121 (184)
T ss_dssp E----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-T
T ss_pred EEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeC
Confidence 46667778999999999999864 24559999999654322 2 6899999999883
No 178
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=79.01 E-value=8.8 Score=32.45 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=41.7
Q ss_pred ccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccc--eecCcEEEEEec
Q 009822 188 SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA--FINPAITIILRM 243 (524)
Q Consensus 188 ~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~--~~~~~i~i~~~~ 243 (524)
.+.-+|++.|-.+-+=||.+. ..+--+.|||++|..|...-.. ...+-..|.|++
T Consensus 20 g~~~yGkimiGDkaFEFyn~~-n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~ 76 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDR-NVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK 76 (118)
T ss_pred cccccCeEEEcccceEeecCC-ChhhcEEeChhheeEEEEEEEECCCEEeeEEEEECC
Confidence 355889999999999999764 3466789999999998765331 224557888975
No 179
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=78.77 E-value=22 Score=32.39 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=51.8
Q ss_pred CCCcEEEEEECCeEE-eeeeecC--CCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009822 34 TSDPYAIITCGSEKR-FSSMVPG--SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (524)
Q Consensus 34 ~~dpyv~v~~~~~~~-~T~~~~~--t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~ 102 (524)
...-|+++.++++.. +|+...- ...-.+++.|.+.+..-+..|.++||.... ..+..|+.+.+++-..
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 356788888887665 4444432 233457899999998888999999999887 5788999999998765
No 180
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=78.67 E-value=52 Score=31.02 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=74.1
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEE-eec--cCCCCCceeeEeEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLC--KSPIYPRDTAMTESQH 415 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~--~~~~gpk~~~~~~~Q~ 415 (524)
-++.+++++++++|++++.....+-.+....+....+. +.. +..+. +.|. .|- ...+.|+..-+. +.
T Consensus 49 k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vl----e~i---d~~~~-i~~~~~p~~~~~~vs~RDfV~~--~~ 118 (208)
T cd08903 49 KGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVV----EAI---SDDVS-VCRTVTPSAAMKIISPRDFVDV--VL 118 (208)
T ss_pred EEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEE----EEe---cCCEE-EEEEecchhcCCCcCCCceEEE--EE
Confidence 37889999999999999753222212221111111110 011 11122 2332 221 112555542222 23
Q ss_pred EEecCCCCeEEEEEEEeeC-CCC-CCCeEEEEE---EEEEEee--CCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHH
Q 009822 416 AVLSPDKKIFVFETVQQAH-DVP-FGSYFEIHG---RWHLETI--AENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKK 488 (524)
Q Consensus 416 ~~~~~~~~~~vv~~~~~~~-dVP-ygd~F~v~~---r~~i~~~--~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~ 488 (524)
.....+ ..+++....... ..| -.++.+++. -|.+... ++++|.+...+.+...++ +-+++|.+...+.+..
T Consensus 119 ~~~~~d-~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~ 196 (208)
T cd08903 119 VKRYED-GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAE 196 (208)
T ss_pred EEecCC-ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHH
Confidence 333333 345554432222 333 345555633 3445544 567899999999988544 5566666655566665
Q ss_pred HHHHHHHHHH
Q 009822 489 EVELMLETAR 498 (524)
Q Consensus 489 ~~~~~~~~~~ 498 (524)
.+..+-+.+.
T Consensus 197 ~~~~Lr~~~~ 206 (208)
T cd08903 197 FYNNLTKAVK 206 (208)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 181
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=78.54 E-value=41 Score=28.70 Aligned_cols=99 Identities=11% Similarity=0.170 Sum_probs=62.1
Q ss_pred eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEec
Q 009822 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419 (524)
Q Consensus 340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 419 (524)
+..++++|+++||+.|-. ....++.+..|.. +.. ... .-++|...++... .+.+..+ ..
T Consensus 3 I~~~l~v~a~~ff~~l~~---s~~~DI~~~tgk~-~~~---------~~L-~G~~Y~K~~~~~~---~~~v~It----~~ 61 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID---SLLYDIKQATGKK-LPV---------KQL-KGFSYQKKFKNKR---EAKVKIT----EY 61 (120)
T ss_pred EEEEecCCHHHHHHHHHH---HHHHHHHHHcCCC-CCh---------hhc-CCcEEEEEcCCCC---EEEEEEE----EE
Confidence 357899999999999965 4556665554422 111 112 2357887765321 3343333 33
Q ss_pred CCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEE
Q 009822 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAH 467 (524)
Q Consensus 420 ~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~ 467 (524)
..+..|.+...+. ......+|.|...+.+.|+|...=.+.
T Consensus 62 ~~~~~Y~~~~~s~--------~~~~~i~Y~i~~~~~~~~~v~y~E~~~ 101 (120)
T PF11687_consen 62 EPNKRYAATFSSS--------RGTFTISYEIEPLDDGSIEVTYEEEYE 101 (120)
T ss_pred cCCCEEEEEEEec--------CCCEEEEEEEEECCCCcEEEEEEEEEc
Confidence 3456888877753 223578999999999989888775543
No 182
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=78.17 E-value=24 Score=32.82 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=39.9
Q ss_pred EEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCCC-C-CceeEEEEEEcccC
Q 009822 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIW-K-STVLGSVIVTVESE 102 (524)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~~-~-d~~iG~~~i~l~~~ 102 (524)
..+|-+...+.+|.|+|++.+.+.. ....|.|++++...-. + ...+|.+.++|-+-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~ 114 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMRE 114 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeeccc
Confidence 3467788888999999999999863 3456999888754221 1 24678887777643
No 183
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=76.02 E-value=4.9 Score=29.24 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=29.8
Q ss_pred eeeEEEeecceEEEEeccCcceeEEEEecccccccc
Q 009822 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ 226 (524)
Q Consensus 191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~ 226 (524)
.-|++++|+-.+.+||..- ....+.||+-.|.+|.
T Consensus 19 ~~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~ 53 (55)
T smart00683 19 DLGVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVR 53 (55)
T ss_pred CeeEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEE
Confidence 3499999999999999873 5678999999998875
No 184
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=75.61 E-value=17 Score=29.98 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=43.1
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEec--CC--CcEEEEEEEEcC
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWD 84 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v~--~~--~~~L~v~v~d~d 84 (524)
+.+.+....++........++-|+.+.+ ++... .|....-...+.|||...|++. +. ...|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4456666666654433333578888765 43322 3444444556899999999853 33 455999999865
No 185
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=75.56 E-value=56 Score=31.69 Aligned_cols=117 Identities=10% Similarity=-0.010 Sum_probs=62.4
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCC-cceEeccccccCCCCCcEEEEEEE-eeccCCCCCceeeEeEEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKD-SNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 416 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~-~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 416 (524)
-.+.++++|++++|++|.. .....+....... ..|..-. ++ .+.+..+ .|...|+.|+..-.... ..
T Consensus 84 K~e~~vd~s~e~v~~lL~D--~~~r~~Wd~~~~e~~vIe~id----~~----~~vY~v~~~p~~~pvs~RDfV~~~s-~~ 152 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSD--LRRRPEWDKHYRSCELVQQVD----ED----DAIYHVTSPSLSGHGKPQDFVILAS-RR 152 (240)
T ss_pred EEEEEEcCCHHHHHHHHhC--hhhhhhhHhhccEEEEEEecC----CC----cEEEEEecCCCCCCCCCCeEEEEEE-EE
Confidence 3567889999999999943 4333333222222 2222221 11 1322222 23323555554322211 11
Q ss_pred EecCCC-CeEEEEEEEeeCCCCCCC----eEEEEEEEEEEeeCCCCeEEEEEEEE
Q 009822 417 VLSPDK-KIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIKVGA 466 (524)
Q Consensus 417 ~~~~~~-~~~vv~~~~~~~dVPygd----~F~v~~r~~i~~~~~~~c~l~v~~~V 466 (524)
....++ .+++....+.-|++|-.. .+.....|+|++.++++|+|.....+
T Consensus 153 ~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~ 207 (240)
T cd08913 153 KPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQA 207 (240)
T ss_pred eccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEe
Confidence 222233 344556666678888444 44578899999999999998554433
No 186
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=75.54 E-value=26 Score=32.93 Aligned_cols=53 Identities=8% Similarity=0.120 Sum_probs=44.4
Q ss_pred CCCCeEEEEEEEeeCCCCCCC---eEEEEEEEEEEeeCCCCeEEEEEEEEEEeeec
Q 009822 420 PDKKIFVFETVQQAHDVPFGS---YFEIHGRWHLETIAENSSTIDIKVGAHFKKWC 472 (524)
Q Consensus 420 ~~~~~~vv~~~~~~~dVPygd---~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t 472 (524)
+.|.++++..+..-+++|.-. .-...++|.|++.++++|+|.--++|.+.+++
T Consensus 124 ~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 124 PRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGRS 179 (205)
T ss_pred CCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCCC
Confidence 345788888888888888765 56678999999999999999999999998743
No 187
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=73.67 E-value=63 Score=30.24 Aligned_cols=149 Identities=7% Similarity=0.020 Sum_probs=71.9
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeec--cCCCCCceeeEeEEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC--KSPIYPRDTAMTESQHA 416 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~--~~~~gpk~~~~~~~Q~~ 416 (524)
-++.++++++++++.+++........+.........+- +.. +..+.-+.|..|- ..++.++.- ...+..
T Consensus 49 k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~l----e~i---d~~~~i~~~~~p~~~~~~vs~RDf--V~~~~~ 119 (206)
T cd08867 49 RAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVL----EKI---SEDLCVGRTITPSAAMGLISPRDF--VDLVYV 119 (206)
T ss_pred EEEEEEcCCHHHHHHHHHhcCccccccccccccceEEE----EEe---CCCeEEEEEEccccccCccCCcce--EEEEEE
Confidence 46788999999999988762211111111111111110 001 1112222232332 112344432 122222
Q ss_pred EecCCCCeEEEEEEEeeCCCCCCCe-E---EEEEEEEEEeeC--CCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPFGSY-F---EIHGRWHLETIA--ENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEV 490 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPygd~-F---~v~~r~~i~~~~--~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~ 490 (524)
....++.+++...+..-+..|--.- - .....|.+++.. +++|.+...+.+...++ +-+++|.+.+.+. .
T Consensus 120 ~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP~~lvn~~~~~~----~ 194 (206)
T cd08867 120 KRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IPQSLVESAMPSN----L 194 (206)
T ss_pred EEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-CcHHHHHhhhhhh----H
Confidence 3333443434434443456654333 2 345678888764 56799988888888654 4455555544444 4
Q ss_pred HHHHHHHHHHH
Q 009822 491 ELMLETARSYI 501 (524)
Q Consensus 491 ~~~~~~~~~~l 501 (524)
..+++.+++.|
T Consensus 195 ~~~~~~lr~~~ 205 (206)
T cd08867 195 VNFYTDLVKGV 205 (206)
T ss_pred HHHHHHHHHhc
Confidence 44445555544
No 188
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=73.62 E-value=52 Score=33.37 Aligned_cols=99 Identities=24% Similarity=0.344 Sum_probs=73.0
Q ss_pred ccCcccceEEeeeeeeee--ccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEecCCCC
Q 009822 170 NLLPDEFVELSYSCVIER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGG 247 (524)
Q Consensus 170 ~lp~~e~l~~~~~c~l~~--~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~ 247 (524)
.|-|.|.+.....-.|.- .+=--|.+++|+-.+-+|++. .-.-.+.||+=+|.+|......+ .+|+.|.|....
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~-ne~fNVSiPylqi~~i~ir~SKf-G~aLVieT~~~s-- 225 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADM-NESFNVSIPYLQIKSIRIRDSKF-GPALVIETSESS-- 225 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccC-CccccccchHhhheeeeeecccc-ceEEEEEEeccC--
Confidence 567888888888887644 444449999999999999975 44668899999999999887753 669999986532
Q ss_pred CCCCCCCCCCCceeEEEeee-ec----hHHHHHHHHHHHHhhc
Q 009822 248 HGVPPLGSPDGRVRYKFASF-WN----RNHALRQLQRTAKNYH 285 (524)
Q Consensus 248 ~~~~~~~~~~~~~~~~f~sf-~~----rd~~~~~l~~~~~~~~ 285 (524)
| .|.+ .| ++ -+..|+-|..||+.+.
T Consensus 226 ----------G--gYVL-GFRvDP~ErL~~l~KEi~sLh~vy~ 255 (339)
T PF07289_consen 226 ----------G--GYVL-GFRVDPEERLQELFKEIQSLHKVYS 255 (339)
T ss_pred ----------C--cEEE-EEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333 33 22 1577888888888865
No 189
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=70.89 E-value=94 Score=29.21 Aligned_cols=146 Identities=11% Similarity=0.101 Sum_probs=73.2
Q ss_pred eeeEE-ecCHHHHHHHHcCCCCchHHHHHHHcCCcce-EeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822 340 YNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKDSNL-VMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 417 (524)
Q Consensus 340 ~~~~~-~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i-~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 417 (524)
...+| ++|+++|++++.. ..+..+.........+ .... + ..++-+-+....-.|+.++..-.. .++.
T Consensus 49 ~~~~~~d~s~~~~~~~~~D--~~~r~~Wd~~~~~~~~le~~~-----~--~~~~i~y~~~~~P~P~s~RD~V~~--r~~~ 117 (207)
T cd08911 49 VYGSFDDVTARDFLNVQLD--LEYRKKWDATAVELEVVDEDP-----E--TGSEIIYWEMQWPKPFANRDYVYV--RRYI 117 (207)
T ss_pred EEEEEcCCCHHHHHHHHhC--HHHHHHHHhhheeEEEEEccC-----C--CCCEEEEEEEECCCCCCCccEEEE--EEEE
Confidence 34667 8999999999986 4554444333332222 2100 0 012322222222234555542222 2333
Q ss_pred ecCCCCeEEEEEEEe-eCCCCCCC----eEEEEEEEEEEeeC---CCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822 418 LSPDKKIFVFETVQQ-AHDVPFGS----YFEIHGRWHLETIA---ENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE 489 (524)
Q Consensus 418 ~~~~~~~~vv~~~~~-~~dVPygd----~F~v~~r~~i~~~~---~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~ 489 (524)
...++..++|..... -+.+|-.. -......|+|++.. +++|++.+.+...-. ..+=.+++..-+..+..+.
T Consensus 118 ~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg-G~IP~~lvN~~~~~~~~~~ 196 (207)
T cd08911 118 IDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG-VNIPSYITSWVAMSGMPDF 196 (207)
T ss_pred EcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC-CccCHHHHHHHHHhhccHH
Confidence 333334444444333 34777555 33467899999884 568888766665332 2234445555555555555
Q ss_pred HHHHHHHH
Q 009822 490 VELMLETA 497 (524)
Q Consensus 490 ~~~~~~~~ 497 (524)
++.+-+.+
T Consensus 197 l~~l~~a~ 204 (207)
T cd08911 197 LERLRNAA 204 (207)
T ss_pred HHHHHHHH
Confidence 55544444
No 190
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=70.83 E-value=1e+02 Score=29.71 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=64.1
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcC-CcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARK-DSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 417 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~-~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 417 (524)
-.+.++++|++++|++|... ..-.+.-.... ...|..-. ++ . .-+..+.|.--|+.|+.--.. .....
T Consensus 80 k~e~~vd~s~~~v~dlL~D~--~~R~~WD~~~~e~evI~~id----~d-~---~iyy~~~p~PwPvk~RDfV~~-~s~~~ 148 (235)
T cd08873 80 CVELKVQTCASDAFDLLSDP--FKRPEWDPHGRSCEEVKRVG----ED-D---GIYHTTMPSLTSEKPNDFVLL-VSRRK 148 (235)
T ss_pred EEEEEecCCHHHHHHHHhCc--chhhhhhhcccEEEEEEEeC----CC-c---EEEEEEcCCCCCCCCceEEEE-EEEEe
Confidence 45778999999999999542 22222221122 22222111 11 1 222233333225666653222 11112
Q ss_pred ecCCCCeEEEEEEEee-CCCCCCCeE----EEEEEEEEEeeCCCCeEEEEEEEEEE
Q 009822 418 LSPDKKIFVFETVQQA-HDVPFGSYF----EIHGRWHLETIAENSSTIDIKVGAHF 468 (524)
Q Consensus 418 ~~~~~~~~vv~~~~~~-~dVPygd~F----~v~~r~~i~~~~~~~c~l~v~~~V~f 468 (524)
...++..|+|...... +.+|=..-| .+...|.|++.++++|+|....++.-
T Consensus 149 ~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dP 204 (235)
T cd08873 149 PATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNP 204 (235)
T ss_pred ccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCC
Confidence 2333334666555555 556544444 36789999999999999988887754
No 191
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=70.70 E-value=96 Score=29.25 Aligned_cols=119 Identities=10% Similarity=0.017 Sum_probs=63.0
Q ss_pred eeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeecc--CCCCCceeeEeEEEE
Q 009822 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK--SPIYPRDTAMTESQH 415 (524)
Q Consensus 338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~--~~~gpk~~~~~~~Q~ 415 (524)
...+.+++.|+.+++++|-. .....++.......++-. +.+ ...+-+.++.+.- .++.|+.--+. +.
T Consensus 47 ~~ge~~v~as~~~v~~ll~D--~~~r~~Wd~~~~~~~vl~---~~~----~d~~i~y~~~~~Pwp~~~~~RDfV~l--~~ 115 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKD--PRTRFLYDTMIKTARIHK---TFT----EDICLVYLVHETPLCLLKQPRDFCCL--QV 115 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhC--cchhhhhHHhhhheeeee---ecC----CCeEEEEEEecCCCCCCCCCCeEEEE--EE
Confidence 34578899999999999943 222222222222222211 111 2224344444322 22255542222 22
Q ss_pred EEecCCCCeEEEEEEEee-CCCCCC-----CeEEEEEEEEEEee---CCCCeEEEEEEEEEEe
Q 009822 416 AVLSPDKKIFVFETVQQA-HDVPFG-----SYFEIHGRWHLETI---AENSSTIDIKVGAHFK 469 (524)
Q Consensus 416 ~~~~~~~~~~vv~~~~~~-~dVPyg-----d~F~v~~r~~i~~~---~~~~c~l~v~~~V~f~ 469 (524)
. ...++.++ |...... +.+|-- =-+.+...|.|++. ++++|+|...++++=.
T Consensus 116 ~-~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 116 E-AKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred E-EECCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 2 22333344 4443333 356533 24677889999999 7789999888887654
No 192
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=70.25 E-value=91 Score=29.42 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=67.1
Q ss_pred eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEec
Q 009822 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419 (524)
Q Consensus 340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 419 (524)
...+++.++.++...+.. .|..+|-.+..|..-+.....+--+-|...--.|+-++.. |.....-...
T Consensus 56 ~~~ei~~~p~~VL~~vl~-----------~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~-v~~R~w~~~~ 123 (205)
T cd08909 56 VSVEVEAPPSVVLNRVLR-----------ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDF-VVLRSWRTDL 123 (205)
T ss_pred EEEEeCCCHHHHHHHHHh-----------hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEE-EEEEEEEEeC
Confidence 356788899988777754 2443443333443322211222334444321113323321 1111111123
Q ss_pred CCCCeEEEEEEEeeCCCCCCCeEE---EEEEEEEEeeCCCCeEEEEEEEEEEeee
Q 009822 420 PDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVGAHFKKW 471 (524)
Q Consensus 420 ~~~~~~vv~~~~~~~dVPygd~F~---v~~r~~i~~~~~~~c~l~v~~~V~f~K~ 471 (524)
.+|.+.++..+..-++.|.-+..+ ..++|.|++.++++|+|.--++|.+.++
T Consensus 124 ~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 124 PKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred CCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 356666666666666677654433 4688999999988999999999998764
No 193
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=68.42 E-value=21 Score=32.97 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=40.3
Q ss_pred EEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCCCC------CceeEEEEEEcccC
Q 009822 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK------STVLGSVIVTVESE 102 (524)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~~~------d~~iG~~~i~l~~~ 102 (524)
...|.+...+.+|.|++++.+.+.. ..-.|.|++++.+--.+ ...+|.+.++|-+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~ 119 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRN 119 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecC
Confidence 3467888889999999999998753 23459999998542211 24688888887753
No 194
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=67.19 E-value=19 Score=33.00 Aligned_cols=53 Identities=15% Similarity=0.304 Sum_probs=38.7
Q ss_pred eeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCC-----CCCceeEEEEEEccc
Q 009822 49 FSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-----WKSTVLGSVIVTVES 101 (524)
Q Consensus 49 ~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~-----~~d~~iG~~~i~l~~ 101 (524)
.+.++....+|.|++++.+.+.. ....|.|++++...- .....+|.+.++|.+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34555545899999999999853 245599999986632 235678999888886
No 195
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=63.87 E-value=28 Score=35.23 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=56.7
Q ss_pred eeEEEeecceEEEEeccCcceeEEEEeccccccccccccc-ee---cCcEEEEEecCCCCCCCCCCCCCCCceeEEEeee
Q 009822 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FI---NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (524)
Q Consensus 192 ~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf 267 (524)
.|+|++|+-.+.++|... ....+.|=+.-|..|+-.... .+ ..|+.|.++-+ ..+.+|.|+..
T Consensus 42 ~G~l~vTNLR~iW~s~~~-~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~------------~~rfEFiFt~~ 108 (339)
T PF07289_consen 42 RGRLVVTNLRLIWHSLKR-PRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN------------NTRFEFIFTNL 108 (339)
T ss_pred eeEEEEEeeeeEEeccCC-CceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC------------CceEEEEeccC
Confidence 499999999999999743 346777777777777654322 11 23888888754 34567777765
Q ss_pred echH---HHHHHHHHHHHhhc
Q 009822 268 WNRN---HALRQLQRTAKNYH 285 (524)
Q Consensus 268 ~~rd---~~~~~l~~~~~~~~ 285 (524)
.... ..|..+..+|+.|.
T Consensus 109 ~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 109 SPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred CCCCccchHHHHHHHHHHHHH
Confidence 4333 45899999999874
No 196
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=63.09 E-value=91 Score=26.20 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=64.9
Q ss_pred eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEec
Q 009822 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419 (524)
Q Consensus 340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 419 (524)
.+.++++|++++|+++-. -.-+.++.. .+....|... + + ..+...+.. .|. ..+.+. .....
T Consensus 6 ~~~~v~a~~e~V~~~l~d--~~~~~~w~~-----~~~~~~~~~~-~-~-~~~~~~~~~-----~g~--~~~~~~-i~~~~ 67 (139)
T PF10604_consen 6 VSIEVPAPPEAVWDLLSD--PENWPRWWP-----GVKSVELLSG-G-G-PGTERTVRV-----AGR--GTVREE-ITEYD 67 (139)
T ss_dssp EEEEESS-HHHHHHHHTT--TTGGGGTST-----TEEEEEEEEE-C-S-TEEEEEEEE-----CSC--SEEEEE-EEEEE
T ss_pred EEEEECCCHHHHHHHHhC--hhhhhhhhh-----ceEEEEEccc-c-c-cceeEEEEe-----ccc--cceeEE-EEEec
Confidence 467889999999999854 222222211 1222222221 1 1 111122221 121 222222 23333
Q ss_pred CCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHH
Q 009822 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARS 499 (524)
Q Consensus 420 ~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~ 499 (524)
+++..+..... ..| -+....+|.+.+.+++ |+|.....+.. . +...+...-....+...++..++.+++
T Consensus 68 ~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~g-t~v~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~l~~ 136 (139)
T PF10604_consen 68 PEPRRITWRFV----PSG---FTNGTGRWRFEPVGDG-TRVTWTVEFEP-G--LPGWLAGPLLRPAVKRIVREALENLKR 136 (139)
T ss_dssp TTTTEEEEEEE----SSS---SCEEEEEEEEEEETTT-EEEEEEEEEEE-S--CTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEE----ecc---eeEEEEEEEEEEcCCC-EEEEEEEEEEE-e--ccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33566666552 233 2355889999999965 99887777776 2 222221222333444555666666655
Q ss_pred HH
Q 009822 500 YI 501 (524)
Q Consensus 500 ~l 501 (524)
.+
T Consensus 137 ~~ 138 (139)
T PF10604_consen 137 AA 138 (139)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 197
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=60.82 E-value=1e+02 Score=29.07 Aligned_cols=147 Identities=10% Similarity=-0.031 Sum_probs=75.1
Q ss_pred eeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEE-eeccCCCCCceeeEeEEEEE
Q 009822 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 416 (524)
Q Consensus 338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 416 (524)
.-++.++++|+..+..++.. .....+....+..... +. ..+.. ..+.|. ..+--|+..+.+-+. .+.+
T Consensus 48 ~k~e~~i~~~~~~~~~vl~d--~~~~~~W~p~~~~~~~-l~------~~~~~-~~v~y~~~~~PwPv~~RD~v~~-~~~~ 116 (215)
T cd08877 48 LRMEGEIDGPLFNLLALLNE--VELYKTWVPFCIRSKK-VK------QLGRA-DKVCYLRVDLPWPLSNREAVFR-GFGV 116 (215)
T ss_pred EEEEEEecCChhHeEEEEeh--hhhHhhhcccceeeEE-Ee------ecCCc-eEEEEEEEeCceEecceEEEEE-EEEE
Confidence 45688999999999988865 3444433222221111 00 10111 234443 222234566654332 2333
Q ss_pred Eec-CCCCeEEEEEEEee--CC--------CCCCC-----eEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeec
Q 009822 417 VLS-PDKKIFVFETVQQA--HD--------VPFGS-----YFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKT 480 (524)
Q Consensus 417 ~~~-~~~~~~vv~~~~~~--~d--------VPygd-----~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~ 480 (524)
... .++ .++|...... .+ +|-.. --.....|.|++.++++|++...+.+.-..+-+=..+|..
T Consensus 117 ~~~~~~~-~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~ 195 (215)
T cd08877 117 DRLEENG-QIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNF 195 (215)
T ss_pred eeeccCC-CEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHH
Confidence 333 344 4444333222 12 56444 2456788999999999999999988875444123344444
Q ss_pred cHHHHHHHHHHHHHHH
Q 009822 481 GAVNKYKKEVELMLET 496 (524)
Q Consensus 481 ~~~~~~~~~~~~~~~~ 496 (524)
-+..-....+..+.+.
T Consensus 196 ~~k~~~~~~~~~l~k~ 211 (215)
T cd08877 196 VARKFAGLLFEKIQKA 211 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334433333
No 198
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=58.66 E-value=42 Score=31.13 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=39.0
Q ss_pred EEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCC--C-------CCceeEEEEEEccc
Q 009822 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII--W-------KSTVLGSVIVTVES 101 (524)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~--~-------~d~~iG~~~i~l~~ 101 (524)
...|.+...+.+|.|.+++.+.+.. ..-.|.|++|+..-. . ....+|.+.++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4467888888999999999998753 244599999986511 1 12457777777665
No 199
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=58.27 E-value=35 Score=28.57 Aligned_cols=85 Identities=11% Similarity=-0.000 Sum_probs=39.8
Q ss_pred EEEEEEC-CeEEeeeeecCCCCCccccEEEEEecC--------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CC--
Q 009822 38 YAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQ-- 104 (524)
Q Consensus 38 yv~v~~~-~~~~~T~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~-- 104 (524)
||...+- -+.+.|.++. +.+|.++-+-.+.+.. ....+.++++..-. .....+|.+++++.++ ..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence 4455443 3445555555 7899999888887642 13559999998652 2356899999999987 22
Q ss_pred cccEEEEecCCCCeeEEEEE
Q 009822 105 TGAVWYTLDSPSGQVCLHIK 124 (524)
Q Consensus 105 ~~~~w~~L~~~~G~i~~~l~ 124 (524)
....-..|.+..|+..+.+.
T Consensus 80 ~i~~~~~l~g~~~~~~g~l~ 99 (107)
T PF11618_consen 80 RIHGSATLVGVSGEDFGTLE 99 (107)
T ss_dssp -EEEEEEE-BSSS-TSEEEE
T ss_pred eEEEEEEEeccCCCeEEEEE
Confidence 23344455555555444444
No 200
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.82 E-value=19 Score=30.06 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=45.8
Q ss_pred cceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccc-eecCcEEEEEecCCCCCCCCCCCCCCCceeEEEeee
Q 009822 189 FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (524)
Q Consensus 189 ~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf 267 (524)
+.-.|++-|-..-+-||-+. .-+.-+.|||++|..|-..-.. -+.+-..|.|. .+-++.|+|=
T Consensus 21 ~~~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td---------------~~gk~~FaSk 84 (122)
T COG4687 21 FAEYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTD---------------TQGKVRFASK 84 (122)
T ss_pred hhhcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEc---------------CCceEEEEeC
Confidence 44679999999999998654 4577889999999877654333 35666777785 2348888774
No 201
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=56.97 E-value=1.2e+02 Score=25.56 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=33.8
Q ss_pred eEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHHHh
Q 009822 441 YFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIK 502 (524)
Q Consensus 441 ~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l~ 502 (524)
.+....+|.|...++++|+|.+.. +|... +..++.......+...++..++.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~t~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 80 GISAVHRHEFEAKPDGGVRVTTSE--SLSGP--LAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred CEEEEEEEEEEEcCCCcEEEEEEE--Eeecc--hHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 366678999999876788887655 45431 11112222333455556666666665543
No 202
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=56.88 E-value=10 Score=42.69 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=69.1
Q ss_pred CCCCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEE
Q 009822 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (524)
Q Consensus 7 ~~~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~ 81 (524)
+.+....|.+.+.+.+|..|.. ..+.||...+. ..+.+|.++.++..|.||+.+.+.+-+ .+.+++..+
T Consensus 752 ~eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ 825 (1112)
T KOG4269|consen 752 DESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKT 825 (1112)
T ss_pred ccCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhh
Confidence 4566778999999999988854 45678877642 345579999999999999999988754 333446666
Q ss_pred EcC----------CCCCCceeEEEEEEcccCCCcccEEEEe
Q 009822 82 DWD----------IIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (524)
Q Consensus 82 d~d----------~~~~d~~iG~~~i~l~~~~~~~~~w~~L 112 (524)
+.+ ...++...|.+++.++.-......|+.-
T Consensus 826 ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d~d~~t~ 866 (1112)
T KOG4269|consen 826 EKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHDADWYTQ 866 (1112)
T ss_pred cccchHHHhhhccchhhcccccccccccCccccccccCccC
Confidence 554 2234456677777777654444556654
No 203
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=52.39 E-value=65 Score=24.84 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=26.3
Q ss_pred ecceEEEEeccCcceeEEEEeccccccccccccceec-----CcEEEEE
Q 009822 198 SAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN-----PAITIIL 241 (524)
Q Consensus 198 t~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~-----~~i~i~~ 241 (524)
++++|.-++ |+..+- ||+.+|++|++..+.+.. ..|+|..
T Consensus 6 ~~~~L~I~~---G~~~~~-I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y 50 (74)
T PF06713_consen 6 EDDYLIIKC---GFFKKK-IPIEDIRSIRPTKNPLSSPALSLDRLEIYY 50 (74)
T ss_pred eCCEEEEEE---CCcccE-EEhHHccEEEecCCccccccccccEEEEEE
Confidence 555666555 422222 999999999998755333 3677776
No 204
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=51.71 E-value=1.4e+02 Score=24.90 Aligned_cols=56 Identities=7% Similarity=0.174 Sum_probs=32.6
Q ss_pred EEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHHH
Q 009822 442 FEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 501 (524)
Q Consensus 442 F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l 501 (524)
|.....|.|...++ +|+|.....+.... +. ..+..-.....+..++.+++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~-~t~v~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 83 FPYEDTYTFEPVGG-GTRVRYTAELEPGG--FA-RLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred cceEEEEEEEEcCC-ceEEEEEEEEccch--hH-HHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44578899998765 69998887776522 11 12222233344455666666665554
No 205
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=49.76 E-value=37 Score=29.20 Aligned_cols=59 Identities=8% Similarity=0.149 Sum_probs=37.5
Q ss_pred CeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHHH
Q 009822 440 SYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 501 (524)
Q Consensus 440 d~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l 501 (524)
+-...+.+|.|++.++++|+|.....+.+....+ +.+.....-+++.+...++.+++.+
T Consensus 82 ~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 82 PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSP---EAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCc---hhHHHHHHHHccccHHHHHHHHHHh
Confidence 3446688999999987789998888888875433 2222333334444555555555544
No 206
>PRK10724 hypothetical protein; Provisional
Probab=44.24 E-value=38 Score=30.47 Aligned_cols=106 Identities=14% Similarity=0.294 Sum_probs=55.2
Q ss_pred eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (524)
Q Consensus 339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (524)
-...+++.|++++|+++-+ -.-+.+|.-.+....+. ...++ + +....+.- +++-. . .-+.+...
T Consensus 18 ~~~~~v~~s~~~v~~lv~D--ve~yp~flp~~~~s~vl----~~~~~-~---~~a~l~v~----~~g~~-~-~f~srv~~ 81 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVND--VQSYPQFLPGCTGSRVL----ESTPG-Q---MTAAVDVS----KAGIS-K-TFTTRNQL 81 (158)
T ss_pred EEEEEecCCHHHHHHHHHH--HHHHHHhCcccCeEEEE----EecCC-E---EEEEEEEe----eCCcc-E-EEEEEEEe
Confidence 3467889999999999954 23344444434333321 11111 1 12222221 22211 1 11122233
Q ss_pred cCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEE
Q 009822 419 SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHF 468 (524)
Q Consensus 419 ~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f 468 (524)
.++ ..+.+. ...+ |+. ..+..|.|.+.++++|+|.....++|
T Consensus 82 ~~~-~~I~~~---~~~G-pF~---~l~g~W~f~p~~~~~t~V~~~l~fef 123 (158)
T PRK10724 82 TSN-QSILMQ---LVDG-PFK---KLIGGWKFTPLSQEACRIEFHLDFEF 123 (158)
T ss_pred cCC-CEEEEE---ecCC-Chh---hccceEEEEECCCCCEEEEEEEEEEE
Confidence 333 333332 1123 433 46899999999888899888888876
No 207
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.76 E-value=7.6 Score=42.64 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=57.9
Q ss_pred CCCCcEEEEEECCeEE-eeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCcccE
Q 009822 33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQTGAV 108 (524)
Q Consensus 33 g~~dpyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~---~~~~~~ 108 (524)
..-+||+.+.+..... .+.+.+.+..|.|+++|..++.. ...+.+.|+.......+.+...+.+...+. ......
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 3468999888764333 45557778999999999999654 667888888865444444444444433333 234567
Q ss_pred EEEecCCCCeeEEEEE
Q 009822 109 WYTLDSPSGQVCLHIK 124 (524)
Q Consensus 109 w~~L~~~~G~i~~~l~ 124 (524)
|..+.+ .|.+...+.
T Consensus 105 w~~~~~-~g~~~~~~~ 119 (694)
T KOG0694|consen 105 WVLIEE-LGTLLKPAA 119 (694)
T ss_pred cccccc-ccceeeeec
Confidence 888764 466654444
No 208
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=43.35 E-value=2.5e+02 Score=25.36 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=52.0
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEE----------CCe-EEeeeeecC-----CCCCccccEEEEEec--CC--CcE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITC----------GSE-KRFSSMVPG-----SRYPMWGEEFNFSVD--EL--PVQ 75 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~----------~~~-~~~T~~~~~-----t~nP~W~e~f~f~v~--~~--~~~ 75 (524)
+.-.|..|.+.. ..+-||+..+ +.. ...|.+... ...-.|+..|.+.+. .+ =..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344567777543 3467888765 122 345555532 234569988888753 22 246
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEcc
Q 009822 76 IIVTIYDWDIIWKSTVLGSVIVTVE 100 (524)
Q Consensus 76 L~v~v~d~d~~~~d~~iG~~~i~l~ 100 (524)
|.|+||..|..+++.+.|...+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999999888776663
No 209
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=42.13 E-value=1.5e+02 Score=26.52 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=62.6
Q ss_pred eeEeEEEEEEecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCC--CCeEEEEEEEEEEee-eceeeeeeeccHHH
Q 009822 408 TAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAE--NSSTIDIKVGAHFKK-WCVIQFKIKTGAVN 484 (524)
Q Consensus 408 ~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~--~~c~l~v~~~V~f~K-~t~~K~~Ie~~~~~ 484 (524)
+-+.|. -...+..+.+.+.+ ..+-+.+.+.|+.+-...+... +.|.+.-.+.|.... ...|.+.||+-+.+
T Consensus 61 ~~~~E~--S~vD~~~k~l~~~t----~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~ 134 (157)
T PF04707_consen 61 CYIIEE--SIVDPKNKTLTTKT----RNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVS 134 (157)
T ss_pred EEEEEE--EEEECCCCEEEEEE----EEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHH
Confidence 444444 33444445555544 4567789999999988888865 689898888888655 46788999998888
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 009822 485 KYKKEVELMLETARSYIKI 503 (524)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~ 503 (524)
..++.+..-.+.++..++.
T Consensus 135 ~f~~na~kgr~~~e~vi~~ 153 (157)
T PF04707_consen 135 RFKSNAKKGREGMEWVIKK 153 (157)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776666655555555554
No 210
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=41.04 E-value=3.6e+02 Score=27.47 Aligned_cols=98 Identities=10% Similarity=0.202 Sum_probs=64.3
Q ss_pred EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCc--cccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM--WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (524)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~--W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG 93 (524)
|.|.|.+-.++. -....|+.+..+....+|..+.-+..-. -.+...+.+..-+..|++.+|-... .+...||
T Consensus 60 LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hIg 133 (508)
T PTZ00447 60 LLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHIG 133 (508)
T ss_pred EEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEEE
Confidence 446655544432 2456888888888888876654433222 2344455566667789999998764 4667899
Q ss_pred EEEEEcccC----CCcccEEEEecCCCCeeE
Q 009822 94 SVIVTVESE----GQTGAVWYTLDSPSGQVC 120 (524)
Q Consensus 94 ~~~i~l~~~----~~~~~~w~~L~~~~G~i~ 120 (524)
.+.+.++.- .-+...||-+. +.|...
T Consensus 134 dI~InIn~dIIdk~FPKnkWy~c~-kDGq~~ 163 (508)
T PTZ00447 134 QIKIDINASVISKSFPKNEWFVCF-KDGQEI 163 (508)
T ss_pred EEEecccHHHHhccCCccceEEEe-cCCcee
Confidence 999999864 44567899995 345443
No 211
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=39.57 E-value=1.4e+02 Score=22.56 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=36.9
Q ss_pred EEeecceEEEEeccCcceeEEEEeccccccccccccce--ec--CcEEEEEec
Q 009822 195 MYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF--IN--PAITIILRM 243 (524)
Q Consensus 195 ~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~--~~--~~i~i~~~~ 243 (524)
..++++.+...+..|+ .....+|+..|.+|+-+++.+ .. ..|.|.+..
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~ 57 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAG 57 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECC
Confidence 6788899999997665 667889999999999987663 12 377777754
No 212
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=37.59 E-value=2.4e+02 Score=23.54 Aligned_cols=134 Identities=9% Similarity=0.031 Sum_probs=69.5
Q ss_pred eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEecC
Q 009822 341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420 (524)
Q Consensus 341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~ 420 (524)
..++++|++++|+++-. ..-+..++... .. ....|. . |+..+ ..+. . .++..... .-++....
T Consensus 5 s~~I~a~~~~Vw~~l~d--~~~~~~w~~~~--~~-~~~~~~---~-Gg~~~-~~~~-~----~~g~~~~~--~~~i~~~~ 67 (139)
T cd07814 5 EREFDAPPELVWRALTD--PELLAQWFGPT--TT-AEMDLR---V-GGRWF-FFMT-G----PDGEEGWV--SGEVLEVE 67 (139)
T ss_pred EEEecCCHHHHHHHcCC--HHHHHhhhCcC--Cc-eEEccc---C-CceEE-EEEE-C----CCCCEEec--cEEEEEEc
Confidence 56789999999999854 33344443221 11 111221 1 22222 1111 1 12222222 12223222
Q ss_pred CCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHH
Q 009822 421 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSY 500 (524)
Q Consensus 421 ~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~ 500 (524)
.+..+.+....... ..-+....+|.|...+ ++|+|.+.......... .....+.++..++.+++.+++.
T Consensus 68 ~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07814 68 PPRRLVFTWAFSDE----TPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA------EQEAREGMEEGWTGTLDRLKAL 136 (139)
T ss_pred CCCeEEEEecccCC----CCCCceEEEEEEEECC-CCEEEEEEEEccChHhH------HHHHHhCHhhHHHHHHHHHHHH
Confidence 33556665543221 2235568899999998 57888777655432111 2345666777777777777777
Q ss_pred Hh
Q 009822 501 IK 502 (524)
Q Consensus 501 l~ 502 (524)
++
T Consensus 137 ~E 138 (139)
T cd07814 137 LE 138 (139)
T ss_pred hh
Confidence 65
No 213
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=37.36 E-value=41 Score=32.18 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.0
Q ss_pred ceeeEEEeecceEEEEeccCcceeEEEEecccccccccc
Q 009822 190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (524)
Q Consensus 190 ~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~ 228 (524)
...||+.+|++.|.|-++ ..+..|||++|.+|...
T Consensus 25 W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 25 WVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred cEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 467999999999999874 45779999999999874
No 214
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.33 E-value=2.2e+02 Score=22.98 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=24.0
Q ss_pred EEEEEEEEEEeeCCCCeEEEEEEEEEEeeec
Q 009822 442 FEIHGRWHLETIAENSSTIDIKVGAHFKKWC 472 (524)
Q Consensus 442 F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t 472 (524)
......|.++..++++|+|.+...+.+....
T Consensus 84 ~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 84 VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 3667888888888768998888887776654
No 215
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.73 E-value=70 Score=27.73 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=38.0
Q ss_pred EEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHHHh
Q 009822 442 FEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIK 502 (524)
Q Consensus 442 F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l~ 502 (524)
+.....|.++..+ ++|+|.+...+......+. ..+.......+++.++..++.++..++
T Consensus 91 ~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 91 ATNDVEFTLEPVG-GGTKVTWGMSGELPFPLKL-MYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred ccceEEEEEEEcC-CceEEEEEEEecCCchHHH-HHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999995 4799998887766543221 244444455555666666666665543
No 216
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=35.88 E-value=2.8e+02 Score=23.78 Aligned_cols=141 Identities=7% Similarity=0.050 Sum_probs=69.1
Q ss_pred eeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 417 (524)
Q Consensus 338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 417 (524)
..+++.|++|++.+|+++-. +..+.+..---.........+...+ |+..+ |.. . ..++.... ..-++.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~td--p~~l~~W~~~~~~~~~~~~~~d~~~--Gg~~~---~~~--~-~~~g~~~~--~~g~~~ 69 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSD--PAARARWFVPSPDWTVLEDEFDFRV--GGREV---SRG--G-PKGGPEIT--VEARYH 69 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcC--HHHHHhcCCCCCCCceeeeEEecCC--CCEEE---EEE--E-CCCCCEEe--eeEEEE
Confidence 35789999999999999855 4444443221011111111111111 22221 211 1 11222111 112233
Q ss_pred ecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHH
Q 009822 418 LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETA 497 (524)
Q Consensus 418 ~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~ 497 (524)
.....+.++........+-|-+ .....+.|...+ ++|+|.+.-...+.... ...+++...+...++.+
T Consensus 70 ~~~p~~~l~~t~~~~~~~~~~~---~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~--------~~~~~~~~GW~~~l~~L 137 (143)
T cd08900 70 DIVPDERIVYTYTMHIGGTLLS---ASLATVEFAPEG-GGTRLTLTEQGAFLDGD--------DDPAGREQGTAALLDNL 137 (143)
T ss_pred EecCCceEEEEEeeccCCcccc---ceEEEEEEEECC-CCEEEEEEEEEeccccc--------chhhhHHHHHHHHHHHH
Confidence 2223455666544333343322 234678887765 57999887554322111 12456677788888888
Q ss_pred HHHHh
Q 009822 498 RSYIK 502 (524)
Q Consensus 498 ~~~l~ 502 (524)
+++|+
T Consensus 138 ~~~l~ 142 (143)
T cd08900 138 AAELE 142 (143)
T ss_pred HHHHh
Confidence 77765
No 217
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.76 E-value=2.6e+02 Score=23.38 Aligned_cols=28 Identities=4% Similarity=0.056 Sum_probs=20.9
Q ss_pred EEEEEEEEEeeCCCCeEEEEEEEEEEee
Q 009822 443 EIHGRWHLETIAENSSTIDIKVGAHFKK 470 (524)
Q Consensus 443 ~v~~r~~i~~~~~~~c~l~v~~~V~f~K 470 (524)
..+..|.|++.++++|+|..........
T Consensus 80 ~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 80 PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 4468888888877788888887776553
No 218
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.53 E-value=3.1e+02 Score=23.60 Aligned_cols=139 Identities=6% Similarity=0.035 Sum_probs=69.8
Q ss_pred eeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCc-ceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDS-NLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 416 (524)
Q Consensus 338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~-~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~ 416 (524)
..++++|++|++++|+++-. +..+..+....+.. .....+|.+ |+. +.|...- + ++....+ .-.+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Td--pe~l~~W~~p~~~~~~~~~~d~r~----GG~---~~~~~~~--~-~g~~~~~--~g~~ 67 (142)
T cd07826 2 IVITREFDAPRELVFRAHTD--PELVKRWWGPRGLTMTVCECDIRV----GGS---YRYVHRA--P-DGEEMGF--HGVY 67 (142)
T ss_pred EEEEEEECCCHHHHHHHhCC--HHHHhhccCCCCCcceEEEEeccC----CCE---EEEEEEC--C-CCCEecc--eEEE
Confidence 35789999999999999965 44444443222111 111223332 222 2333211 1 1111111 1123
Q ss_pred EecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET 496 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~ 496 (524)
......+.+++.... .+.| . -.....|.|+..+ ++|+|.+. ..|... .........++.+-+...++.
T Consensus 68 ~ei~p~~~l~~t~~~--~~~~-~--~~s~v~~~l~~~~-~gT~l~l~--~~~~~~----~~~~~~~~~~~~~Gw~~~l~~ 135 (142)
T cd07826 68 HEVTPPERIVQTEEF--EGLP-D--GVALETVTFTELG-GRTRLTAT--SRYPSK----EARDGVLASGMEEGMEESYDR 135 (142)
T ss_pred EEEcCCCEEEEEeEe--cCCC-C--CceEEEEEEEECC-CCEEEEEE--EEeCCH----HHHHHHHHhhHHHHHHHHHHH
Confidence 322233455554332 3333 2 2345577788765 67999886 334211 111113455677778888888
Q ss_pred HHHHHh
Q 009822 497 ARSYIK 502 (524)
Q Consensus 497 ~~~~l~ 502 (524)
|.++|+
T Consensus 136 L~~~l~ 141 (142)
T cd07826 136 LDELLA 141 (142)
T ss_pred HHHHHh
Confidence 888775
No 219
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=33.21 E-value=3.4e+02 Score=25.18 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=46.8
Q ss_pred EEeecceEEEEe-----ccCcceeEEEEeccccccccccccceecCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeec
Q 009822 195 MYVSAWHICFHS-----NAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269 (524)
Q Consensus 195 ~yit~~~~cF~s-----~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~ 269 (524)
|.||++++|.-. .......+-.||+.+|++|.-.+.. .+-+.|.+.. +--+.|.+ ..
T Consensus 70 livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~--D~~~vihv~~---------------~~D~il~~-~~ 131 (199)
T PF06017_consen 70 LIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLS--DNFFVIHVPG---------------EGDLILES-DF 131 (199)
T ss_pred EEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCC--CCEEEEEECC---------------CCCEEEEe-Cc
Confidence 689999999986 5566788999999999999776543 2334455431 22344444 34
Q ss_pred hHHHHHHHHHHHHh
Q 009822 270 RNHALRQLQRTAKN 283 (524)
Q Consensus 270 rd~~~~~l~~~~~~ 283 (524)
+-+....|...++.
T Consensus 132 k~Elv~~L~~~~~~ 145 (199)
T PF06017_consen 132 KTELVTILCKAYKK 145 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666666654
No 220
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=32.93 E-value=44 Score=29.56 Aligned_cols=28 Identities=18% Similarity=0.578 Sum_probs=23.8
Q ss_pred EEEEEEEEEeeCCCCeEEEEEEEEEEee
Q 009822 443 EIHGRWHLETIAENSSTIDIKVGAHFKK 470 (524)
Q Consensus 443 ~v~~r~~i~~~~~~~c~l~v~~~V~f~K 470 (524)
+...+|.|++.+++.|+|.....-+|..
T Consensus 86 ~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 86 YLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhcCceEEEECCCCceEEEEEEEeeehh
Confidence 5789999999999999988887777744
No 221
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=32.49 E-value=2.8e+02 Score=30.49 Aligned_cols=96 Identities=17% Similarity=0.277 Sum_probs=67.3
Q ss_pred EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCC---CCCce
Q 009822 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII---WKSTV 91 (524)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~---~~d~~ 91 (524)
.+.|.|++.++|+... ...-.||.+.+.+.+.+|..... .-|.|.-.=.|....+-..+++.+|-.... -.|.-
T Consensus 342 smevvvmevqglksva--pnrivyctmevegeklqtdqaea-skp~wgtqgdfstthplpvvkvklftestgvlaledke 418 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA--PNRIVYCTMEVEGEKLQTDQAEA-SKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKE 418 (1218)
T ss_pred eeeEEEeeeccccccC--CCeeEEEEEEecccccccchhhh-cCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechh
Confidence 4678888999987643 23347999999888887766644 369998877777666566678888765421 13556
Q ss_pred eEEEEEEcccCCCcccEEEEec
Q 009822 92 LGSVIVTVESEGQTGAVWYTLD 113 (524)
Q Consensus 92 iG~~~i~l~~~~~~~~~w~~L~ 113 (524)
+|++-+.-.+.......|+.+.
T Consensus 419 lgrvil~ptpns~ks~ewh~mt 440 (1218)
T KOG3543|consen 419 LGRVILQPTPNSAKSPEWHTMT 440 (1218)
T ss_pred hCeEEEecCCCCcCCccceeee
Confidence 8888777666666667888763
No 222
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.42 E-value=3.3e+02 Score=23.13 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=23.1
Q ss_pred EEEEEEEEEeeCC-CCeEEEEEEEEEEee
Q 009822 443 EIHGRWHLETIAE-NSSTIDIKVGAHFKK 470 (524)
Q Consensus 443 ~v~~r~~i~~~~~-~~c~l~v~~~V~f~K 470 (524)
..+..|.+++.++ ++|++.....+.+.-
T Consensus 88 ~~~g~w~~~~~~~~~~t~v~~~~~~~~~~ 116 (144)
T cd08866 88 RFEGSWRLEPLADGGGTLLTYEVEVKPDF 116 (144)
T ss_pred ceEEEEEEEECCCCCeEEEEEEEEEEeCC
Confidence 4599999999987 789988888887643
No 223
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=31.26 E-value=87 Score=26.77 Aligned_cols=28 Identities=21% Similarity=0.684 Sum_probs=23.9
Q ss_pred EEEEEEEEEeeCCCCeEEEEEEEEEEee
Q 009822 443 EIHGRWHLETIAENSSTIDIKVGAHFKK 470 (524)
Q Consensus 443 ~v~~r~~i~~~~~~~c~l~v~~~V~f~K 470 (524)
..+..|.|++.++++|+|.....+++..
T Consensus 82 ~~~g~w~~~p~~~~~T~v~~~~~~~~~~ 109 (138)
T cd07813 82 HLEGEWRFKPLGENACKVEFDLEFEFKS 109 (138)
T ss_pred hceeEEEEEECCCCCEEEEEEEEEEECC
Confidence 3689999999998899998888888754
No 224
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=30.26 E-value=5.1e+02 Score=25.03 Aligned_cols=119 Identities=12% Similarity=0.021 Sum_probs=61.8
Q ss_pred eeeeeEEecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccccccCCCCCcEEEEEEEe-eccCCCCCceeeEeEEEE
Q 009822 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRS-LCKSPIYPRDTAMTESQH 415 (524)
Q Consensus 338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~-~~~~~~gpk~~~~~~~Q~ 415 (524)
.-.+.++++|++++|++|.+ .....++- .......|..-. ++ . + +-|.. |--.|+-++..-+. ...
T Consensus 80 fk~e~~vdvs~~~l~~LL~D--~~~r~~Wd~~~~e~~vI~qld----~~-~---~-vY~~~~pPw~Pvk~RD~V~~-~s~ 147 (236)
T cd08914 80 VWVEKHVKRPAHLAYRLLSD--FTKRPLWDPHFLSCEVIDWVS----ED-D---Q-IYHITCPIVNNDKPKDLVVL-VSR 147 (236)
T ss_pred EEEEEEEcCCHHHHHHHHhC--hhhhchhHHhhceEEEEEEeC----CC-c---C-EEEEecCCCCCCCCceEEEE-EEE
Confidence 44567889999999999965 32222222 222222333221 11 1 2 22221 21113444432221 212
Q ss_pred EEecCCCCeEEEEEEEeeC-CCCCCCeEE-EEE---EEEEEeeCCCCeEEEEEEEEEE
Q 009822 416 AVLSPDKKIFVFETVQQAH-DVPFGSYFE-IHG---RWHLETIAENSSTIDIKVGAHF 468 (524)
Q Consensus 416 ~~~~~~~~~~vv~~~~~~~-dVPygd~F~-v~~---r~~i~~~~~~~c~l~v~~~V~f 468 (524)
-....++..|+|....... .+|=..-|. ++. =|.|++.++++|+|...+++.-
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcCC
Confidence 2223245445554444433 666655554 333 3599999999999999999987
No 225
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=28.17 E-value=3e+02 Score=22.23 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=39.2
Q ss_pred eeeEEEeecceEEEEeccCcceeEEEEecccccccccccc-ceec-C-cEEEEEecCCCCCCCCCCCCCCCceeEEEeee
Q 009822 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH-AFIN-P-AITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (524)
Q Consensus 191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~-~~~~-~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf 267 (524)
-.|-||.+++.+-|-. .+--+.|+++||..|+-... ..-. . -+.|+++.. +...+.|++.
T Consensus 11 ~~g~L~pl~~~l~f~~----~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~-------------~~~~~~fs~I 73 (95)
T PF08512_consen 11 NEGFLYPLEKCLLFGL----EKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDY-------------EGPPHEFSSI 73 (95)
T ss_dssp EEEEEEEESSEEEEEC----SSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT--------------TS-EEEEEEE
T ss_pred cCEEEEEccceEEEec----CCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecC-------------CCCcEEEeeE
Confidence 4699999999887732 23468999999999987553 2111 1 567777531 3468888776
Q ss_pred ec
Q 009822 268 WN 269 (524)
Q Consensus 268 ~~ 269 (524)
-.
T Consensus 74 ~~ 75 (95)
T PF08512_consen 74 DR 75 (95)
T ss_dssp EG
T ss_pred CH
Confidence 43
No 226
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=24.65 E-value=4.6e+02 Score=22.60 Aligned_cols=134 Identities=9% Similarity=0.054 Sum_probs=65.1
Q ss_pred eEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEecCC
Q 009822 342 DVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 421 (524)
Q Consensus 342 ~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~ 421 (524)
-++|.+++++|.+|-+ ..-+... .-|...+... + + .|...++..+||-+....-.=++....+
T Consensus 3 ~~v~a~~~~vw~~l~D--~~~l~~c--iPG~~~~e~~--------~---~--~~~~~~~v~vG~i~~~~~g~~~~~~~~~ 65 (140)
T PF06240_consen 3 FEVPAPPEKVWAFLSD--PENLARC--IPGVESIEKV--------G---D--EYKGKVKVKVGPIKGTFDGEVRITEIDP 65 (140)
T ss_dssp EEECS-HHHHHHHHT---HHHHHHH--STTEEEEEEE--------C---T--EEEEEEEEESCCCEEEEEEEEEEEEEET
T ss_pred EEecCCHHHHHHHhcC--HHHHHhh--CCCcEEeeec--------C---c--EEEEEEEEEeccEEEEEEEEEEEEEcCC
Confidence 4688999999998844 2222221 1122222211 1 2 3333333457887665554334443333
Q ss_pred CCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEee--eceeeeeeeccHHHHHHHHHHHHHHHHHH
Q 009822 422 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKK--WCVIQFKIKTGAVNKYKKEVELMLETARS 499 (524)
Q Consensus 422 ~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K--~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~ 499 (524)
...+.+.-.-.- - +..+.+.....+...+.+.++|...+.+.... ..+-+.+|+.. .....+++++.+++
T Consensus 66 ~~~~~~~~~g~g--~--~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~----~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 66 PESYTLEFEGRG--R--GGGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESV----ARRLIEQFFENLER 137 (140)
T ss_dssp TTEEEEEEEEEE--C--TCCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHH----HHHHHHHHHHHHHH
T ss_pred CcceEeeeeccC--C--ccceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHH----HHHHHHHHHHHHHH
Confidence 344444444332 2 33455555555555555458888888887655 33444444333 33334444444444
Q ss_pred H
Q 009822 500 Y 500 (524)
Q Consensus 500 ~ 500 (524)
.
T Consensus 138 ~ 138 (140)
T PF06240_consen 138 K 138 (140)
T ss_dssp H
T ss_pred h
Confidence 3
No 227
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=23.95 E-value=1.1e+02 Score=26.57 Aligned_cols=48 Identities=27% Similarity=0.481 Sum_probs=27.0
Q ss_pred eEEEeecceEEEEec-cCcceeEEEEeccccc--ccccccc-ceecCcEEEEEe
Q 009822 193 GRMYVSAWHICFHSN-AFSRQMKVIIPIGDID--EIQRSQH-AFINPAITIILR 242 (524)
Q Consensus 193 Gr~yit~~~~cF~s~-~~g~~~~~~i~~~~i~--~i~k~~~-~~~~~~i~i~~~ 242 (524)
|.|||+++.|.|.++ . ...-+.||+..|. .|.+... ..-.+.|.+.+-
T Consensus 1 g~L~Vt~~~l~w~~~~~--~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld 52 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNED--SSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLD 52 (135)
T ss_dssp EEEEEETTEEEEEET----TTEEEEESS---SEEE--SS-S-S--S--EEEEEE
T ss_pred CEEEEecCEEEEECCCc--CCcceeecCCeEEEEEeecCCCCCCCCceEEEEEe
Confidence 789999999999993 2 2477889999883 4554433 333456766663
No 228
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=23.81 E-value=80 Score=36.12 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCcEEEEEECCeEE-eeeeecCC-CCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEE
Q 009822 35 SDPYAIITCGSEKR-FSSMVPGS-RYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWY 110 (524)
Q Consensus 35 ~dpyv~v~~~~~~~-~T~~~~~t-~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~ 110 (524)
.++|+.+.+..... +|....+. .+|.|.+.|...+......+.+.+-+.+..+....+|.+.+++..+ +.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 47888887764443 56666555 7899999998887766777999998887777678899999998877 46677898
Q ss_pred EecC
Q 009822 111 TLDS 114 (524)
Q Consensus 111 ~L~~ 114 (524)
++..
T Consensus 218 ~Il~ 221 (887)
T KOG1329|consen 218 PILD 221 (887)
T ss_pred eeec
Confidence 8754
No 229
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.84 E-value=4.3e+02 Score=21.61 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=33.3
Q ss_pred EEeecceEEEEeccCcceeEEEEecccccccccccccee--cCcEEEEEe
Q 009822 195 MYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--NPAITIILR 242 (524)
Q Consensus 195 ~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~--~~~i~i~~~ 242 (524)
.-+|.+.|+||..- +...+-.|||.+|..|+......+ .+.++|.+.
T Consensus 26 F~Lt~~~L~Y~k~~-~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~ 74 (98)
T cd01244 26 FQLTTTHLSWAKDV-QCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCE 74 (98)
T ss_pred EEECCCEEEEECCC-CCceeeeEEccceEEEEEcCCcccCCCceEEEEeC
Confidence 34566677777644 467888999999999987654322 258888883
No 230
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=22.24 E-value=64 Score=30.89 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=39.7
Q ss_pred eeeEEEeecceEEEEecc-CcceeEEEEeccccccccccccceecCcEE
Q 009822 191 YHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAIT 238 (524)
Q Consensus 191 ~~Gr~yit~~~~cF~s~~-~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~ 238 (524)
..|.||+|..+|-|-|.- --+-..+.+||.-+.+++..+..+-.|.|.
T Consensus 47 kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~klnQPvF~aNyik 95 (261)
T KOG3294|consen 47 KKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLNQPVFGANYIK 95 (261)
T ss_pred eeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceecCcccccceee
Confidence 459999999999999876 335668999999999999988887667664
No 231
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.59 E-value=4.7e+02 Score=21.64 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=32.9
Q ss_pred EEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHHH
Q 009822 442 FEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 501 (524)
Q Consensus 442 F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l 501 (524)
+.....|.++..++++|++.... .|.. +....+.......+.+.++.+++.++..+
T Consensus 85 ~~~~~~~~~~~~~~~~T~~~~~~--~~~g--~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 140 (141)
T cd07822 85 LDGEHSFELEPLGDGGTRFVHRE--TFSG--LLAPLVLLGLGRDLRAGFEAMNEALKARA 140 (141)
T ss_pred eeEEEEEEEEEcCCCcEEEEEee--EEEE--EEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence 45678899999877899987653 3332 22222223334455555666666665543
No 232
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=21.09 E-value=1.9e+02 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=25.9
Q ss_pred eeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEe
Q 009822 432 QAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFK 469 (524)
Q Consensus 432 ~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~ 469 (524)
..++.| .+....+|.|+..++ +|+|.......+.
T Consensus 80 ~~~~~p---~~~m~~~W~f~~~~~-gT~V~~~~~~~~~ 113 (146)
T cd08860 80 RVETGP---FAYMNIRWEYTEVPE-GTRMRWVQDFEMK 113 (146)
T ss_pred EecCCC---cceeeeeEEEEECCC-CEEEEEEEEEEEC
Confidence 334445 568899999999966 4999888888776
No 233
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=20.84 E-value=3.4e+02 Score=29.33 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=57.8
Q ss_pred eeeee-ccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEecCCCCCCCCCCCCCCCcee
Q 009822 183 CVIER-SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVR 261 (524)
Q Consensus 183 c~l~~-~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
|++.. .....|||=||..-|-|...--| .-+.||-.||..++-.+... .++|.|.|+.| .-
T Consensus 10 iyl~~~G~~~~G~lkit~~gi~~K~~~gg--k~~~v~~sei~~~~w~k~~r-~~~LrV~tk~g---------------~~ 71 (615)
T KOG0526|consen 10 IYLEVSGHLKPGTLKITESGIGFKNSKGG--KVVTVPASEIDKVKWQKGVR-GYGLRVFTKDG---------------GV 71 (615)
T ss_pred eEEecccccccceEEEccCceeEeeCCCC--ceEEeehHHhhhhhhhhhcc-ccceEEEccCC---------------ce
Confidence 44433 45788999999999999976545 56778899998887665543 46999999743 47
Q ss_pred EEEeeeechHHHHHHHHHHHHh
Q 009822 262 YKFASFWNRNHALRQLQRTAKN 283 (524)
Q Consensus 262 ~~f~sf~~rd~~~~~l~~~~~~ 283 (524)
|.|..|. |.-++.|....+.
T Consensus 72 ~~~~GF~--d~d~~~L~~ff~~ 91 (615)
T KOG0526|consen 72 YRFDGFR--DDDLEKLKSFFSS 91 (615)
T ss_pred EEecCcC--HHHHHHHHHHHHH
Confidence 8888884 4445555555443
No 234
>PF04386 SspB: Stringent starvation protein B; InterPro: IPR007481 Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB is a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA []. However, more recent work has cast doubt on the importance of SspB in wild-type cells []. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of all ClpXP substrates [].; PDB: 2NYS_A 2QAZ_D 2QAS_A 1OX9_A 1OX8_A 1YFN_C 1TWB_B 1OU9_C 1OU8_B 1ZSZ_B ....
Probab=20.43 E-value=1.6e+02 Score=26.44 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=31.1
Q ss_pred eEEEeecceEEEEeccCcceeEEEEecccccccccc
Q 009822 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (524)
Q Consensus 193 Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~ 228 (524)
..|.+.+.+|.|....-|....+.|||..|..|--.
T Consensus 67 ~~L~v~~d~i~f~arF~G~~~~i~VP~~AV~aiya~ 102 (155)
T PF04386_consen 67 RDLSVDNDAISFTARFGGVPESIYVPFSAVLAIYAR 102 (155)
T ss_dssp EEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEEET
T ss_pred CCcEEECCEEEEEEEECCEEEEEEEhHHhhheeecc
Confidence 468999999999999989999999999999888643
No 235
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.17 E-value=5.9e+02 Score=22.28 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=67.8
Q ss_pred ceeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822 337 VGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 416 (524)
Q Consensus 337 ~~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~ 416 (524)
...++.++++|++++|+++-. ..-+.+... . . ..++. .|+ .++|..-- + ++- ...-.+
T Consensus 12 ~i~~~~~i~Ap~e~Vw~altd--p~~~~~W~~-~--~---~~~~~----~G~---~~~~~~~~--~-~~~----~~~~~v 69 (157)
T cd08899 12 TLRFERLLPAPIEDVWAALTD--PERLARWFA-P--G---TGDLR----VGG---RVEFVMDD--E-EGP----NATGTI 69 (157)
T ss_pred EEEEEEecCCCHHHHHHHHcC--HHHHHhhcC-C--C---CCCcc----cCc---eEEEEecC--C-CCC----ccceEE
Confidence 456789999999999999965 333333322 1 0 01121 122 23333211 1 111 011122
Q ss_pred EecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822 417 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET 496 (524)
Q Consensus 417 ~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~ 496 (524)
........+.+.... .+ +....+|.|+..+ ++|+|.+...+. ... ...+++.+.+...++.
T Consensus 70 ~e~~p~~~l~~~~~~--~~------~~~~~~~~l~~~~-~gT~v~~~~~~~-~~~---------~~~~~~~~GW~~~L~~ 130 (157)
T cd08899 70 LACEPPRLLAFTWGE--GG------GESEVRFELAPEG-DGTRLTLTHRLL-DER---------FGAGAVGAGWHLCLDV 130 (157)
T ss_pred EEEcCCcEEEEEecC--CC------CCceEEEEEEEcC-CCEEEEEEEecc-Cch---------hhhhhhcccHHHHHHH
Confidence 222223445554331 11 3446677788765 578887776552 111 2456677778888888
Q ss_pred HHHHHhhcC
Q 009822 497 ARSYIKICT 505 (524)
Q Consensus 497 ~~~~l~~~~ 505 (524)
+.++++...
T Consensus 131 Lk~~~e~~~ 139 (157)
T cd08899 131 LEAALEGGP 139 (157)
T ss_pred HHHHHcCCC
Confidence 888888665
Done!