BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009823
         (524 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
           Phosphoinositide Phosphatase Function
          Length = 505

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 201/464 (43%), Gaps = 100/464 (21%)

Query: 62  KIRTIFGVVGVLKLLAGSYLIVITERECVGSYLGHPIYKVASLKILPCDHSLNNSSAEQK 121
           ++  I  ++G +KL    Y I+    E  G + GH  Y+V    I+       NS  + +
Sbjct: 52  EVVKIASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKF---NSRIDSE 108

Query: 122 KVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEPRFLWNNYL 181
             EAE+  LL+L  +    YFSY  +LT S+QR   +G  +     W+ A+ RF WN+YL
Sbjct: 109 --EAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAAS----WKTADERFFWNHYL 162

Query: 182 MEAL-----IDNKLDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGA 236
            E L      D ++D F+ PVI G        +    I + LI RR   R GTR +RRG 
Sbjct: 163 TEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGV 222

Query: 237 DSDGYVANFVETEQVVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAE 290
           D DG V NF ETEQ++           + SF+Q RGS+P  W +  +L YKP   ++  E
Sbjct: 223 DKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPN--LVLGE 280

Query: 291 EAPRVVERHFLDLRKKYGNVLAVDLVNKHGGEGRLCENFGNAMQNVASDDIRYLHFDFHR 350
            +    ++HF   ++ YG+   V+LVN+ G E  + E + + +  +    I Y++FDFH 
Sbjct: 281 NSLDATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALNDPKIHYVYFDFHH 340

Query: 351 ICGHVHFERLSILFEQI-------EDFLEK----NG------------------------ 375
            C  + + R+ +L + +       EDF  K    NG                        
Sbjct: 341 ECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSVVRTNCMDCLDRT 400

Query: 376 ---------YLLLNEKDNVDLVCVPVCCRDNVDLRT-MQGILNDGWNAL----------- 414
                    ++L  E ++ D+V       DN  L T  Q +  D  +A+           
Sbjct: 401 NVVQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVSVAYSGTGALK 460

Query: 415 ----------------------ARYYLNNFCDGTKQDAIDLLQG 436
                                 +RYY NN+ DG +QD+ DL  G
Sbjct: 461 TDFTRTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLG 504


>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
           Thyroid- Stimulating Autoantibody
 pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
           Blocking Type Tshr Autoantibody
          Length = 239

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 363 LFEQIEDFLEKNGYLLLNEKDNVDLVCVPV-----CCRDNVDLRTMQGILNDGWNALARY 417
           +F  +      + + +L   DN  +  +PV      C + + L+    + N+G+ ++  Y
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK----LYNNGFTSVQGY 174

Query: 418 YLNNFCDGTKQDAIDLLQGHYIVSVSRD 445
             N    GTK DA+ L +  Y+  + +D
Sbjct: 175 AFN----GTKLDAVYLNKNKYLTVIDKD 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,494,111
Number of Sequences: 62578
Number of extensions: 642514
Number of successful extensions: 1796
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1784
Number of HSP's gapped (non-prelim): 8
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)