Query 009823
Match_columns 524
No_of_seqs 250 out of 815
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 13:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009823.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009823hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w32a_ c.1.8.3 (A:) Xylanase 26.5 41 0.003 31.4 6.0 62 290-353 98-186 (346)
2 d1us3a2 c.1.8.3 (A:243-606) Xy 17.0 45 0.0033 31.0 4.0 60 291-352 113-196 (364)
3 d1v5ib1 d.58.3.2 (B:1-72) Prot 16.1 1.1E+02 0.0083 21.5 5.3 63 285-347 7-70 (72)
4 d1r85a_ c.1.8.3 (A:) Xylanase 13.4 41 0.003 31.8 2.5 59 293-352 125-199 (371)
5 d1mkya2 c.37.1.8 (A:173-358) P 12.5 2.5E+02 0.018 22.0 7.3 73 296-374 108-184 (186)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 12.5 1.9E+02 0.014 24.9 6.8 12 464-475 13-24 (227)
7 d1ta3b_ c.1.8.3 (B:) Xylanase 10.6 71 0.0051 28.8 3.2 56 292-349 101-172 (301)
8 d1va4a_ c.69.1.12 (A:) Arylest 10.5 2.6E+02 0.019 22.2 6.9 55 259-318 1-57 (271)
9 d1i1wa_ c.1.8.3 (A:) Xylanase 9.0 83 0.0061 28.4 3.0 102 262-369 78-196 (303)
10 d1xioa_ f.13.1.1 (A:) Sensory 8.5 2.7E+02 0.02 23.6 6.3 61 455-516 3-76 (226)
No 1
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]}
Probab=26.45 E-value=41 Score=31.42 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCcHHHHHHHHHHHHHHhCC-cEEEeccccC--------------------------CchhhHHHHHHHHHhhcCCCCce
Q 009823 290 EEAPRVVERHFLDLRKKYGN-VLAVDLVNKH--------------------------GGEGRLCENFGNAMQNVASDDIR 342 (524)
Q Consensus 290 ~~~~~a~~~HF~~l~~~YG~-v~~VNLv~~~--------------------------g~E~~L~~~y~~~v~~l~~~~i~ 342 (524)
++...++++|+..+..+|+. +..-+.+|.- +++.-+..||+.+=+. +|+++
T Consensus 98 ~~~~~~~~~~I~~v~~ry~g~i~~WDVvNE~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yi~~aF~~Ar~~--dP~a~ 175 (346)
T d1w32a_ 98 ANFRQDFARHIDTVAAHFAGQVKSWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAA--DPTAE 175 (346)
T ss_dssp TTHHHHHHHHHHHHHHHTTTTCSEEEEEECCBCCGGGCTTCCCEETTEECCHHHHHHTSTHHHHHHHHHHHHH--CTTSE
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEEeeeccccccCccccccccccccchhhhhccChHHHHHHHHHHHHh--CCCCE
Confidence 45568899999999999985 5444443320 1334566777776543 46788
Q ss_pred Eeechhhhhhc
Q 009823 343 YLHFDFHRICG 353 (524)
Q Consensus 343 y~~fDfh~~ck 353 (524)
++.=||.-+..
T Consensus 176 L~~Ndyn~~~~ 186 (346)
T d1w32a_ 176 LYYNDFNTEEN 186 (346)
T ss_dssp EEEEESSTTSC
T ss_pred EEeccCCcccC
Confidence 88778876543
No 2
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}
Probab=17.04 E-value=45 Score=31.00 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHHHHHh---CCcEEEecccc----CC-----------------chhhHHHHHHHHHhhcCCCCceEeec
Q 009823 291 EAPRVVERHFLDLRKKY---GNVLAVDLVNK----HG-----------------GEGRLCENFGNAMQNVASDDIRYLHF 346 (524)
Q Consensus 291 ~~~~a~~~HF~~l~~~Y---G~v~~VNLv~~----~g-----------------~E~~L~~~y~~~v~~l~~~~i~y~~f 346 (524)
+...++++|+..+..+| |.|..-+.+|. .+ .+.-+..||+.+-+. .+..+.+.=
T Consensus 113 ~~~~~~~~~I~~vv~ry~~~G~I~~WDVvNEp~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Af~~Ar~~--~p~a~l~~n 190 (364)
T d1us3a2 113 DFLAALDTHITTIVDHYEAKGNLVSWDVVNEAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAA--DPAVILYYN 190 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCBCSSSSCCBCCTTCHHHHHTTSCSHHHHHHHHHHHHH--CTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEEEecccccCCCCcccccccchHHHHhCCchHHHHHHHHHHHHh--ccccceeec
Confidence 34577889999999999 66754444432 11 122455666655432 455666665
Q ss_pred hhhhhh
Q 009823 347 DFHRIC 352 (524)
Q Consensus 347 Dfh~~c 352 (524)
||..+.
T Consensus 191 dy~~~~ 196 (364)
T d1us3a2 191 DYNIEQ 196 (364)
T ss_dssp ESSTTS
T ss_pred cccccc
Confidence 776554
No 3
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Probab=16.10 E-value=1.1e+02 Score=21.47 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=42.8
Q ss_pred EecCCCCcHHHHHHHHHHHHHHhCCc-EEEeccccCCchhhHHHHHHHHHhhcCCCCceEeech
Q 009823 285 EILRAEEAPRVVERHFLDLRKKYGNV-LAVDLVNKHGGEGRLCENFGNAMQNVASDDIRYLHFD 347 (524)
Q Consensus 285 ~i~~~~~~~~a~~~HF~~l~~~YG~v-~~VNLv~~~g~E~~L~~~y~~~v~~l~~~~i~y~~fD 347 (524)
.+.....+..+...|.+.+....|.+ +..++=.=+|.=..|.+.--+.+..+++|.|.|+.=|
T Consensus 7 VvlK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D 70 (72)
T d1v5ib1 7 VIFKNDVSEDKIRETKDEVIAEGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (72)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence 33444556778899999999999875 3444312256666667766677777777789998655
No 4
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}
Probab=13.41 E-value=41 Score=31.82 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhC-CcE---EEec-cccCC-----------chhhHHHHHHHHHhhcCCCCceEeechhhhhh
Q 009823 293 PRVVERHFLDLRKKYG-NVL---AVDL-VNKHG-----------GEGRLCENFGNAMQNVASDDIRYLHFDFHRIC 352 (524)
Q Consensus 293 ~~a~~~HF~~l~~~YG-~v~---~VNL-v~~~g-----------~E~~L~~~y~~~v~~l~~~~i~y~~fDfh~~c 352 (524)
..++++|+..+..+|+ .|. |||= ++..+ .+.-+..+|+.+-+.. ++.++...=||.-+.
T Consensus 125 ~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r~~~~~~~~g~dyi~~af~~A~~~~-~p~~~L~~Ndy~~~~ 199 (371)
T d1r85a_ 125 LKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYG-GDNIKLYMNDYNTEV 199 (371)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBCCCHHHHHHTTHHHHHHHHHHHHHH-CTTSEEEEEESCTTS
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEeecccCCCCcccCchhhccCcHHHHHHHHHHHHhc-CCcceeeeccccccc
Confidence 4668889999999995 565 5552 11111 2445667777765543 345665555776553
No 5
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}
Probab=12.55 E-value=2.5e+02 Score=22.00 Aligned_cols=73 Identities=7% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCC--cEEEeccccCCchhhHHHHHHHHHhhcC--CCCceEeechhhhhhcCCccchHHHHHHHHHHHH
Q 009823 296 VERHFLDLRKKYGN--VLAVDLVNKHGGEGRLCENFGNAMQNVA--SDDIRYLHFDFHRICGHVHFERLSILFEQIEDFL 371 (524)
Q Consensus 296 ~~~HF~~l~~~YG~--v~~VNLv~~~g~E~~L~~~y~~~v~~l~--~~~i~y~~fDfh~~ck~~~~~~l~~L~~~i~~~l 371 (524)
-.+++..+.+.++. ++++|=++....+....+.+.+.+.... .+.+..+ .+...+-.++..|++.|.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 108 QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI------FTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 44566666677775 3456777654333333344444443221 0111111 122334467888999998877
Q ss_pred Hhc
Q 009823 372 EKN 374 (524)
Q Consensus 372 ~~~ 374 (524)
+++
T Consensus 182 ~~~ 184 (186)
T d1mkya2 182 ASY 184 (186)
T ss_dssp HHH
T ss_pred HhC
Confidence 654
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=12.52 E-value=1.9e+02 Score=24.91 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 009823 464 ALSLVLTGLFFA 475 (524)
Q Consensus 464 ~~~~~~~~~~~~ 475 (524)
..+|....+++.
T Consensus 13 ~~~m~~a~v~f~ 24 (227)
T d1m0ka_ 13 TALMGLGTLYFL 24 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 7
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]}
Probab=10.59 E-value=71 Score=28.78 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHhCC-cE---EEecc-ccC-----------CchhhHHHHHHHHHhhcCCCCceEeechhh
Q 009823 292 APRVVERHFLDLRKKYGN-VL---AVDLV-NKH-----------GGEGRLCENFGNAMQNVASDDIRYLHFDFH 349 (524)
Q Consensus 292 ~~~a~~~HF~~l~~~YG~-v~---~VNLv-~~~-----------g~E~~L~~~y~~~v~~l~~~~i~y~~fDfh 349 (524)
....+.+|+..+..+|+. +. |||=. +.. ..+.-+..+|+.+=+. +++.+.+.=||+
T Consensus 101 ~~~~~~~~I~~v~~rY~g~i~~WDVvNEp~~~~~~~~~~~~~~~~g~~~~~~af~~A~~~--dP~a~l~~nd~~ 172 (301)
T d1ta3b_ 101 LRSVMTNHINEVVGRYKGKIMHWDVVNEIFNEDGTFRNSVFYNLLGEDFVRIAFETARAA--DPDAKLYINDYN 172 (301)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSEEEEEESCBCTTSSBCCCHHHHHHTTHHHHHHHHHHHHH--CTTSEEEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCCcceEEeecccccCCCCcccchhhhccchHHHHHHHHHHHHh--CcCceeeecccc
Confidence 356799999999999964 54 55532 111 1233455555544332 456665555665
No 8
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]}
Probab=10.45 E-value=2.6e+02 Score=22.16 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=34.7
Q ss_pred EEEEeeecCCCeeeeEccCCccCceEEecC-CCCcHHHHHHHHHHHHHHhC-CcEEEecccc
Q 009823 259 ASFVQVRGSIPFLWEQTVDLTYKPKFEILR-AEEAPRVVERHFLDLRKKYG-NVLAVDLVNK 318 (524)
Q Consensus 259 ~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~~-~~~~~~a~~~HF~~l~~~YG-~v~~VNLv~~ 318 (524)
+|||.+.| +.++|++.++ .|+|.+.. ...+...+..-.+.|.++ | .++++++-..
T Consensus 1 s~f~~~dG-~~l~y~~~G~---g~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~vi~~D~~G~ 57 (271)
T d1va4a_ 1 STFVAKDG-TQIYFKDWGS---GKPVLFSHGWLLDADMWEYQMEYLSSR-GYRTIAFDRRGF 57 (271)
T ss_dssp CEEECTTS-CEEEEEEESS---SSEEEEECCTTCCGGGGHHHHHHHHTT-TCEEEEECCTTS
T ss_pred CEEEeECC-eEEEEEEEcC---CCeEEEECCCCCCHHHHHHHHHHHHhC-CCEEEEEecccc
Confidence 47888888 9999998764 35565543 333444444444555444 4 5788898764
No 9
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus aurantiacus [TaxId: 5087]}
Probab=9.01 E-value=83 Score=28.39 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred EeeecCCCeeeeEccCCccCceEEecCCCCcHHHHHHHHHHHHHHhCC-cEEEeccccC---------------CchhhH
Q 009823 262 VQVRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGN-VLAVDLVNKH---------------GGEGRL 325 (524)
Q Consensus 262 vQiRGSVPlfW~Q~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~-v~~VNLv~~~---------------g~E~~L 325 (524)
+.+||-.++.-+|.|....+.. ..++...++++|+..+..+|+. +...+.+|.- -.+.-+
T Consensus 78 i~vrGH~lvW~~~~P~W~~~~~----~~~~~~~~~~~~i~~v~~rY~g~i~~WdVvNE~~~~~~~~r~~~~~~~~g~d~i 153 (303)
T d1i1wa_ 78 KLIRGHTLVWHSQLPSWVSSIT----DKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYI 153 (303)
T ss_dssp CEEEEEEEECSTTCCHHHHTCC----CHHHHHHHHHHHHHHHHHHTTTSCSEEEEEESCBCTTSSBCCCHHHHHTCTTHH
T ss_pred CEEEEeeeeecCcCchhhhccc----ccHHHHHHHHHHHHHHHHHcCCCCchhhhcccccCCCcccccCchhhcccHHHH
Q ss_pred HHHHHHHHhhcCCCCceEeechhhhhhcCC-ccchHHHHHHHHHH
Q 009823 326 CENFGNAMQNVASDDIRYLHFDFHRICGHV-HFERLSILFEQIED 369 (524)
Q Consensus 326 ~~~y~~~v~~l~~~~i~y~~fDfh~~ck~~-~~~~l~~L~~~i~~ 369 (524)
..+|+.+=+. +|+.+.+.=||.-+.... +.+.+-.+++.+.+
T Consensus 154 ~~af~~Ar~~--dP~a~L~~Ndy~~~~~~~~k~~~~~~~v~~l~~ 196 (303)
T d1i1wa_ 154 PIAFQTARAA--DPNAKLYINDYNLDSASYPKTQAIVNRVKKWRA 196 (303)
T ss_dssp HHHHHHHHHH--CTTSEEEEEESSCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCEEEeecCcccCCcHHHHHHHHHHHHHHHh
No 10
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=8.49 E-value=2.7e+02 Score=23.62 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcCc-------------ccccc
Q 009823 455 LEAMASFPLALSLVLTGLFFATLSLRQVRYDLKHLLFSFIWASLSVALAAFVRAKGR-------------LFCNR 516 (524)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~-------------~~v~~ 516 (524)
.++..+......|.+.++++...+.+..... ........-+..+++..++-++.|. .|+||
T Consensus 3 ~~s~~~wv~~~~m~~~~~~f~~~~~~~~~~~-r~~~~~~~~I~~iA~~~Y~~ma~~~g~~~~~~~~v~~~RYiDW 76 (226)
T d1xioa_ 3 LESLLHWIYVAGMTIGALHFWSLSRNPRGVP-QYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDW 76 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCC-HHHHHHHHHHHHHHHHHHHHHHHC---------CTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHccCCccc-hhhHHHHHHHHHHHHHHHHHHHhcCCeeeecCceeeHHHHHHH
Done!