Query 009824
Match_columns 524
No_of_seqs 356 out of 2108
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 17:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3437 Response regulator con 100.0 1.4E-34 3.1E-39 295.8 9.2 243 22-284 13-284 (360)
2 COG4566 TtrR Response regulato 99.9 8.1E-24 1.8E-28 200.2 14.7 184 22-245 3-187 (202)
3 COG0745 OmpR Response regulato 99.9 2.5E-21 5.4E-26 191.7 16.6 118 24-144 1-120 (229)
4 COG2197 CitB Response regulato 99.9 3.7E-21 7.9E-26 188.1 16.8 122 24-147 1-125 (211)
5 COG4753 Response regulator con 99.8 6.5E-20 1.4E-24 196.2 14.4 119 23-143 1-123 (475)
6 COG2204 AtoC Response regulato 99.8 2.4E-19 5.3E-24 192.0 16.7 119 24-144 5-124 (464)
7 COG4565 CitB Response regulato 99.8 6.5E-19 1.4E-23 169.9 16.9 119 24-144 1-122 (224)
8 PF00072 Response_reg: Respons 99.8 7.7E-18 1.7E-22 144.5 15.9 110 26-137 1-112 (112)
9 PRK10046 dpiA two-component re 99.8 2.2E-17 4.9E-22 161.2 20.9 123 20-144 1-126 (225)
10 PRK10840 transcriptional regul 99.8 8.4E-18 1.8E-22 162.5 17.3 121 23-145 3-129 (216)
11 PRK09483 response regulator; P 99.7 6.4E-17 1.4E-21 153.8 18.3 121 23-145 1-124 (217)
12 PRK09958 DNA-binding transcrip 99.7 7.3E-17 1.6E-21 152.0 16.5 118 24-143 1-120 (204)
13 COG0784 CheY FOG: CheY-like re 99.7 4.8E-16 1E-20 136.6 17.0 119 22-141 4-125 (130)
14 PRK11475 DNA-binding transcrip 99.7 3.9E-16 8.4E-21 152.5 14.7 108 36-145 3-118 (207)
15 PRK10430 DNA-binding transcrip 99.7 3.4E-15 7.4E-20 147.0 21.2 119 24-142 2-123 (239)
16 PRK10529 DNA-binding transcrip 99.7 1.3E-15 2.9E-20 145.8 17.5 118 24-143 2-119 (225)
17 PLN03029 type-a response regul 99.7 9E-16 1.9E-20 150.9 16.6 121 23-143 8-149 (222)
18 PRK11173 two-component respons 99.7 2.1E-15 4.6E-20 146.5 17.4 118 24-143 4-121 (237)
19 PRK10816 DNA-binding transcrip 99.7 2.6E-15 5.7E-20 143.8 17.3 118 24-143 1-119 (223)
20 PRK10360 DNA-binding transcrip 99.7 3.9E-15 8.5E-20 139.3 17.8 116 24-143 2-119 (196)
21 PRK09935 transcriptional regul 99.7 2.9E-15 6.4E-20 140.9 16.8 119 23-143 3-124 (210)
22 PRK10766 DNA-binding transcrip 99.7 3.6E-15 7.8E-20 142.5 17.1 118 24-143 3-120 (221)
23 PRK09836 DNA-binding transcrip 99.7 4.4E-15 9.5E-20 142.7 17.4 117 24-142 1-118 (227)
24 PRK10643 DNA-binding transcrip 99.6 5.2E-15 1.1E-19 140.4 17.4 118 24-143 1-119 (222)
25 COG3706 PleD Response regulato 99.6 2E-15 4.4E-20 160.9 16.0 122 22-145 131-255 (435)
26 PRK10701 DNA-binding transcrip 99.6 7E-15 1.5E-19 142.9 17.3 118 24-143 2-119 (240)
27 PRK11517 transcriptional regul 99.6 8.6E-15 1.9E-19 139.5 17.2 118 24-143 1-118 (223)
28 PRK10336 DNA-binding transcrip 99.6 9.4E-15 2E-19 138.6 17.1 118 24-143 1-119 (219)
29 PRK10955 DNA-binding transcrip 99.6 9.1E-15 2E-19 140.2 16.9 118 24-144 2-119 (232)
30 PRK10161 transcriptional regul 99.6 1E-14 2.2E-19 140.3 17.3 117 24-142 3-122 (229)
31 TIGR02154 PhoB phosphate regul 99.6 1.1E-14 2.3E-19 138.4 17.1 118 24-143 3-123 (226)
32 CHL00148 orf27 Ycf27; Reviewed 99.6 1.2E-14 2.5E-19 140.2 17.6 119 23-143 6-124 (240)
33 PRK13856 two-component respons 99.6 1.2E-14 2.5E-19 142.1 17.1 117 25-143 3-120 (241)
34 PRK09390 fixJ response regulat 99.6 1.6E-14 3.4E-19 133.7 16.8 119 22-142 2-121 (202)
35 COG4567 Response regulator con 99.6 4.6E-15 9.9E-20 136.3 12.6 112 25-138 11-123 (182)
36 PRK09468 ompR osmolarity respo 99.6 1.8E-14 3.9E-19 139.8 17.3 119 23-143 5-124 (239)
37 PRK11083 DNA-binding response 99.6 1.9E-14 4E-19 137.2 16.7 118 24-143 4-122 (228)
38 TIGR03787 marine_sort_RR prote 99.6 2.4E-14 5.3E-19 137.3 17.4 117 25-143 2-121 (227)
39 PRK10100 DNA-binding transcrip 99.6 7.4E-15 1.6E-19 144.3 13.8 117 24-147 11-132 (216)
40 COG3947 Response regulator con 99.6 2.4E-15 5.1E-20 150.9 10.2 115 24-142 1-116 (361)
41 PRK15347 two component system 99.6 1.5E-14 3.3E-19 167.0 17.2 120 21-142 688-812 (921)
42 PRK15411 rcsA colanic acid cap 99.6 3E-14 6.5E-19 138.8 16.6 119 24-145 1-126 (207)
43 PRK10841 hybrid sensory kinase 99.6 2.6E-14 5.6E-19 166.9 18.0 120 22-143 800-920 (924)
44 KOG0519 Sensory transduction h 99.6 1.4E-14 2.9E-19 166.2 15.0 123 17-140 660-784 (786)
45 PRK15369 two component system 99.6 5.4E-14 1.2E-18 130.7 16.3 119 23-143 3-124 (211)
46 PRK11107 hybrid sensory histid 99.6 2.5E-14 5.5E-19 165.0 17.0 119 22-142 666-787 (919)
47 TIGR01387 cztR_silR_copR heavy 99.6 8.4E-14 1.8E-18 131.7 16.9 117 26-144 1-118 (218)
48 PRK10651 transcriptional regul 99.6 1.2E-13 2.5E-18 130.1 16.8 119 23-143 6-127 (216)
49 PRK15479 transcriptional regul 99.6 4.5E-13 9.7E-18 127.0 20.9 119 24-144 1-120 (221)
50 PRK11697 putative two-componen 99.5 1.1E-13 2.5E-18 134.7 16.1 116 23-142 1-118 (238)
51 PRK11466 hybrid sensory histid 99.5 5.9E-14 1.3E-18 162.4 16.6 121 22-143 680-801 (914)
52 PRK14084 two-component respons 99.5 1.3E-13 2.7E-18 135.4 16.5 115 24-142 1-118 (246)
53 TIGR02875 spore_0_A sporulatio 99.5 1.3E-13 2.9E-18 137.0 16.6 118 23-142 2-124 (262)
54 PRK11361 acetoacetate metaboli 99.5 1.2E-13 2.6E-18 148.3 16.8 121 20-142 1-122 (457)
55 PRK10365 transcriptional regul 99.5 8.7E-14 1.9E-18 148.6 15.3 119 22-142 4-123 (441)
56 PRK09581 pleD response regulat 99.5 3.8E-14 8.2E-19 149.4 12.3 118 22-142 154-274 (457)
57 PRK10403 transcriptional regul 99.5 3.1E-13 6.7E-18 126.8 16.7 119 23-143 6-127 (215)
58 PRK10710 DNA-binding transcrip 99.5 3.9E-13 8.4E-18 129.5 17.6 118 24-143 11-128 (240)
59 PRK15115 response regulator Gl 99.5 1.4E-13 3E-18 147.6 15.8 118 23-142 5-123 (444)
60 PRK10923 glnG nitrogen regulat 99.5 2.3E-13 5E-18 147.0 17.2 117 24-142 4-121 (469)
61 TIGR02956 TMAO_torS TMAO reduc 99.5 1.8E-13 3.8E-18 159.2 16.5 118 23-142 702-823 (968)
62 PRK12555 chemotaxis-specific m 99.5 3.1E-13 6.8E-18 140.4 15.7 116 24-141 1-129 (337)
63 PRK09959 hybrid sensory histid 99.5 2.6E-13 5.7E-18 161.6 17.1 121 20-142 955-1076(1197)
64 TIGR02915 PEP_resp_reg putativ 99.5 3.1E-13 6.6E-18 145.0 15.8 113 26-142 1-119 (445)
65 PRK11091 aerobic respiration c 99.5 3.4E-13 7.4E-18 154.1 16.2 117 23-142 525-645 (779)
66 TIGR01818 ntrC nitrogen regula 99.5 5.3E-13 1.1E-17 143.7 15.9 115 26-142 1-116 (463)
67 COG3707 AmiR Response regulato 99.5 4.1E-13 8.9E-18 128.3 12.7 120 23-144 5-125 (194)
68 PRK13435 response regulator; P 99.5 1.7E-12 3.7E-17 117.0 15.1 117 23-144 5-123 (145)
69 PRK10610 chemotaxis regulatory 99.5 5.3E-12 1.2E-16 106.5 17.0 118 23-142 5-126 (129)
70 PRK09581 pleD response regulat 99.4 3E-12 6.6E-17 135.0 17.5 117 24-142 3-122 (457)
71 PRK13558 bacterio-opsin activa 99.4 1.3E-12 2.8E-17 146.7 15.1 119 22-142 6-127 (665)
72 PRK00742 chemotaxis-specific m 99.4 3.7E-12 8.1E-17 133.1 16.5 104 23-128 3-110 (354)
73 COG2201 CheB Chemotaxis respon 99.4 2.3E-12 4.9E-17 134.1 13.0 104 23-128 1-108 (350)
74 PRK09191 two-component respons 99.3 4.3E-11 9.3E-16 118.1 15.6 116 23-142 137-254 (261)
75 PRK13837 two-component VirA-li 99.3 5.2E-11 1.1E-15 137.7 17.5 118 23-143 697-815 (828)
76 cd00156 REC Signal receiver do 99.2 2.1E-10 4.6E-15 92.0 13.0 111 27-139 1-112 (113)
77 PRK13557 histidine kinase; Pro 99.2 4E-10 8.6E-15 121.5 15.7 119 23-142 415-535 (540)
78 PRK10693 response regulator of 99.1 3.9E-10 8.4E-15 116.0 12.5 89 52-142 2-92 (303)
79 PRK15029 arginine decarboxylas 99.1 8.3E-10 1.8E-14 125.7 13.6 118 24-143 1-134 (755)
80 COG3279 LytT Response regulato 99.0 1.5E-09 3.2E-14 108.8 10.7 116 23-142 1-119 (244)
81 PLN03162 golden-2 like transcr 98.9 2.7E-09 5.9E-14 109.5 5.8 60 186-245 230-294 (526)
82 COG2206 c-di-GMP phosphodieste 98.8 2.3E-09 5E-14 112.5 4.3 79 193-284 151-247 (344)
83 PRK11107 hybrid sensory histid 98.3 7.3E-06 1.6E-10 95.1 14.4 113 22-140 535-650 (919)
84 COG3706 PleD Response regulato 98.2 1.5E-06 3.2E-11 93.5 5.2 94 47-143 12-105 (435)
85 TIGR01557 myb_SHAQKYF myb-like 98.1 4.2E-06 9.2E-11 65.7 5.2 51 191-241 1-52 (57)
86 PF13487 HD_5: HD domain; PDB: 97.8 8.1E-06 1.8E-10 65.3 1.8 48 228-284 1-48 (64)
87 PF06490 FleQ: Flagellar regul 97.6 0.00044 9.4E-09 61.2 10.0 105 25-139 1-107 (109)
88 smart00448 REC cheY-homologous 97.6 0.00058 1.3E-08 47.1 8.1 55 24-80 1-55 (55)
89 cd02071 MM_CoA_mut_B12_BD meth 96.6 0.054 1.2E-06 48.5 13.2 110 25-136 1-120 (122)
90 PF03709 OKR_DC_1_N: Orn/Lys/A 96.5 0.026 5.6E-07 50.2 10.1 105 36-142 6-114 (115)
91 PRK02261 methylaspartate mutas 96.4 0.14 3.1E-06 47.1 14.7 115 23-140 3-134 (137)
92 cd02067 B12-binding B12 bindin 96.0 0.095 2.1E-06 46.3 11.0 93 30-125 10-109 (119)
93 PRK10618 phosphotransfer inter 95.8 0.059 1.3E-06 63.8 11.3 52 20-79 686-737 (894)
94 TIGR00640 acid_CoA_mut_C methy 95.2 0.53 1.2E-05 43.1 13.2 110 30-141 13-128 (132)
95 PRK15399 lysine decarboxylase 94.3 0.46 1E-05 54.9 12.5 115 24-142 1-123 (713)
96 PRK15400 lysine decarboxylase 93.8 0.59 1.3E-05 54.0 12.1 79 24-106 1-86 (714)
97 TIGR01501 MthylAspMutase methy 93.5 2 4.3E-05 39.6 12.9 110 30-141 12-133 (134)
98 cd04728 ThiG Thiazole synthase 93.0 1.3 2.8E-05 44.8 11.7 111 24-142 94-226 (248)
99 PRK00208 thiG thiazole synthas 92.8 1.2 2.7E-05 45.0 11.4 110 24-141 94-225 (250)
100 TIGR03815 CpaE_hom_Actino heli 92.5 0.39 8.4E-06 49.9 7.7 84 47-139 1-85 (322)
101 PF02310 B12-binding: B12 bind 90.9 3.4 7.4E-05 36.0 10.9 92 31-125 12-111 (121)
102 PRK01130 N-acetylmannosamine-6 90.6 5 0.00011 39.3 12.9 85 38-125 109-202 (221)
103 cd02070 corrinoid_protein_B12- 90.2 3.7 7.9E-05 39.9 11.4 98 23-125 82-191 (201)
104 PRK15320 transcriptional activ 89.8 2.2 4.8E-05 42.0 9.3 98 25-125 3-102 (251)
105 cd02069 methionine_synthase_B1 89.7 3.8 8.2E-05 40.5 11.1 102 23-126 88-202 (213)
106 cd02072 Glm_B12_BD B12 binding 89.5 9.4 0.0002 35.0 12.6 105 30-137 10-127 (128)
107 COG2185 Sbm Methylmalonyl-CoA 89.1 10 0.00023 35.4 12.8 114 23-141 12-138 (143)
108 COG4999 Uncharacterized domain 88.4 2.2 4.8E-05 38.7 7.5 109 22-136 10-121 (140)
109 PRK00043 thiE thiamine-phospha 87.9 7.6 0.00017 37.3 11.8 69 52-124 110-187 (212)
110 PF10087 DUF2325: Uncharacteri 86.8 5 0.00011 34.3 8.7 82 25-106 1-85 (97)
111 PF01408 GFO_IDH_MocA: Oxidore 86.0 11 0.00025 32.4 10.8 107 24-142 1-112 (120)
112 CHL00162 thiG thiamin biosynth 85.7 19 0.00041 36.8 13.3 98 41-142 131-240 (267)
113 cd04729 NanE N-acetylmannosami 84.8 13 0.00028 36.4 11.7 75 48-125 124-206 (219)
114 PRK09426 methylmalonyl-CoA mut 83.0 13 0.00029 43.2 12.5 109 30-141 593-708 (714)
115 TIGR02370 pyl_corrinoid methyl 81.4 12 0.00026 36.3 9.8 90 30-124 95-192 (197)
116 TIGR03151 enACPred_II putative 80.6 15 0.00032 38.4 10.8 84 39-125 101-190 (307)
117 cd02068 radical_SAM_B12_BD B12 79.3 21 0.00045 31.7 10.0 107 33-141 2-112 (127)
118 PF07688 KaiA: KaiA domain; I 78.6 7.4 0.00016 39.7 7.4 111 26-142 3-119 (283)
119 PF01596 Methyltransf_3: O-met 77.2 13 0.00028 36.6 8.6 59 20-78 67-130 (205)
120 TIGR00007 phosphoribosylformim 76.8 32 0.00069 33.7 11.4 67 56-124 147-217 (230)
121 TIGR01334 modD putative molybd 76.7 11 0.00023 39.1 8.1 95 26-124 159-262 (277)
122 cd04730 NPD_like 2-Nitropropan 76.6 37 0.00081 33.2 11.8 81 42-125 97-185 (236)
123 PRK11840 bifunctional sulfur c 75.7 28 0.00061 36.8 11.0 111 24-142 168-300 (326)
124 PRK00278 trpC indole-3-glycero 75.0 82 0.0018 32.0 14.0 95 26-124 138-239 (260)
125 PF03602 Cons_hypoth95: Conser 74.5 12 0.00026 36.0 7.5 67 24-92 66-138 (183)
126 cd00331 IGPS Indole-3-glycerol 74.5 78 0.0017 30.8 13.4 78 44-124 118-200 (217)
127 PRK07896 nicotinate-nucleotide 74.3 17 0.00037 37.8 9.0 95 26-124 173-273 (289)
128 cd00564 TMP_TenI Thiamine mono 74.3 24 0.00051 32.9 9.4 69 52-124 101-177 (196)
129 TIGR03239 GarL 2-dehydro-3-deo 73.9 40 0.00086 34.2 11.4 82 56-139 22-106 (249)
130 PRK10558 alpha-dehydro-beta-de 73.8 37 0.00079 34.6 11.1 100 38-139 9-113 (256)
131 COG0512 PabA Anthranilate/para 73.8 5.4 0.00012 39.0 4.8 77 23-103 1-81 (191)
132 PF05690 ThiG: Thiazole biosyn 72.8 65 0.0014 32.7 12.2 114 24-141 94-225 (247)
133 TIGR02026 BchE magnesium-proto 72.5 43 0.00094 37.2 12.3 107 32-141 21-137 (497)
134 cd02065 B12-binding_like B12 b 72.1 23 0.00051 30.7 8.2 74 30-105 10-89 (125)
135 PLN02871 UDP-sulfoquinovose:DA 72.1 42 0.00091 36.4 11.9 107 23-141 290-399 (465)
136 TIGR01761 thiaz-red thiazoliny 72.1 44 0.00095 35.6 11.6 105 22-142 2-114 (343)
137 PRK05749 3-deoxy-D-manno-octul 71.2 38 0.00082 36.1 11.1 111 23-141 262-387 (425)
138 cd04727 pdxS PdxS is a subunit 71.2 29 0.00063 36.0 9.6 88 52-142 118-247 (283)
139 PRK10128 2-keto-3-deoxy-L-rham 70.9 51 0.0011 33.8 11.4 100 38-139 8-112 (267)
140 TIGR00693 thiE thiamine-phosph 70.5 30 0.00065 32.9 9.2 69 52-124 102-179 (196)
141 TIGR00343 pyridoxal 5'-phospha 69.9 30 0.00065 35.9 9.4 61 83-143 184-251 (287)
142 TIGR03088 stp2 sugar transfera 69.6 35 0.00075 35.3 10.2 107 23-141 229-337 (374)
143 PRK12704 phosphodiesterase; Pr 69.1 5.3 0.00012 44.8 4.2 45 98-142 251-297 (520)
144 cd04726 KGPDC_HPS 3-Keto-L-gul 67.9 1E+02 0.0022 29.3 12.3 99 23-125 77-186 (202)
145 cd03823 GT1_ExpE7_like This fa 67.8 80 0.0017 31.2 12.1 66 70-141 263-328 (359)
146 PRK13587 1-(5-phosphoribosyl)- 67.5 24 0.00052 35.3 8.1 67 57-124 151-220 (234)
147 COG2022 ThiG Uncharacterized e 66.4 47 0.001 33.7 9.6 113 24-140 101-231 (262)
148 PRK15484 lipopolysaccharide 1, 66.3 1.2E+02 0.0025 32.1 13.5 109 23-141 224-343 (380)
149 cd04724 Tryptophan_synthase_al 66.2 26 0.00056 35.2 8.1 58 84-141 64-127 (242)
150 cd04722 TIM_phosphate_binding 66.1 57 0.0012 29.8 10.0 56 69-124 136-198 (200)
151 PLN02591 tryptophan synthase 65.7 19 0.00041 36.6 7.0 59 83-141 65-129 (250)
152 TIGR02311 HpaI 2,4-dihydroxyhe 65.5 83 0.0018 31.8 11.6 83 55-139 21-106 (249)
153 cd03820 GT1_amsD_like This fam 65.4 83 0.0018 30.6 11.5 108 23-141 209-318 (348)
154 PRK08385 nicotinate-nucleotide 65.0 63 0.0014 33.5 10.7 94 26-124 157-258 (278)
155 PRK07428 nicotinate-nucleotide 64.7 33 0.00072 35.6 8.7 94 26-124 169-270 (288)
156 PRK03958 tRNA 2'-O-methylase; 64.6 76 0.0017 30.7 10.4 93 24-125 32-128 (176)
157 PRK05567 inosine 5'-monophosph 64.6 60 0.0013 36.0 11.3 98 23-124 240-359 (486)
158 cd01424 MGS_CPS_II Methylglyox 64.4 55 0.0012 28.3 8.9 27 28-54 7-33 (110)
159 PTZ00314 inosine-5'-monophosph 64.4 59 0.0013 36.3 11.2 32 94-125 342-373 (495)
160 PF03060 NMO: Nitronate monoox 64.0 56 0.0012 34.3 10.4 82 40-124 129-218 (330)
161 PRK10669 putative cation:proto 63.4 64 0.0014 36.2 11.4 30 93-124 505-534 (558)
162 cd03813 GT1_like_3 This family 63.4 59 0.0013 35.5 10.9 107 23-141 324-441 (475)
163 PRK00748 1-(5-phosphoribosyl)- 63.3 37 0.00079 33.3 8.4 66 57-124 149-219 (233)
164 PRK01911 ppnK inorganic polyph 63.2 73 0.0016 33.1 10.9 101 24-143 1-121 (292)
165 PF00534 Glycos_transf_1: Glyc 62.6 79 0.0017 28.5 10.1 109 23-143 47-159 (172)
166 PF14097 SpoVAE: Stage V sporu 62.5 80 0.0017 30.5 10.0 81 26-106 3-95 (180)
167 TIGR01037 pyrD_sub1_fam dihydr 62.3 1.2E+02 0.0026 31.1 12.3 58 86-143 224-287 (300)
168 PRK05458 guanosine 5'-monophos 62.2 1.3E+02 0.0028 32.0 12.6 98 25-125 113-230 (326)
169 cd04962 GT1_like_5 This family 62.1 66 0.0014 32.7 10.4 106 24-141 228-335 (371)
170 PRK13111 trpA tryptophan synth 61.8 28 0.00062 35.5 7.5 58 84-141 76-140 (258)
171 PLN02274 inosine-5'-monophosph 61.8 1.1E+02 0.0023 34.4 12.6 99 23-124 260-379 (505)
172 PRK09922 UDP-D-galactose:(gluc 61.7 94 0.002 32.2 11.6 111 23-143 210-325 (359)
173 PRK05703 flhF flagellar biosyn 61.0 73 0.0016 34.8 10.9 92 23-115 251-351 (424)
174 PRK12724 flagellar biosynthesi 60.1 1.1E+02 0.0024 33.7 11.9 99 23-123 252-365 (432)
175 PRK15427 colanic acid biosynth 60.0 1.6E+02 0.0034 31.6 13.2 108 23-141 253-369 (406)
176 TIGR00262 trpA tryptophan synt 59.7 1.9E+02 0.0041 29.4 13.0 100 24-126 116-228 (256)
177 cd06533 Glyco_transf_WecG_TagA 59.6 64 0.0014 30.5 9.1 77 23-103 46-131 (171)
178 PRK06843 inosine 5-monophospha 59.6 1.1E+02 0.0024 33.4 11.8 100 22-124 164-284 (404)
179 cd00452 KDPG_aldolase KDPG and 59.5 72 0.0016 30.5 9.5 75 45-125 95-171 (190)
180 TIGR00308 TRM1 tRNA(guanine-26 59.4 1.8E+02 0.0039 31.3 13.4 92 24-121 70-169 (374)
181 PF02254 TrkA_N: TrkA-N domain 58.7 78 0.0017 27.1 8.8 92 24-124 22-115 (116)
182 TIGR00735 hisF imidazoleglycer 58.7 1E+02 0.0022 30.9 10.9 79 57-137 158-247 (254)
183 PRK07649 para-aminobenzoate/an 58.6 12 0.00027 36.2 4.1 48 26-75 2-49 (195)
184 TIGR00566 trpG_papA glutamine 58.4 40 0.00087 32.3 7.6 74 26-103 2-79 (188)
185 CHL00200 trpA tryptophan synth 58.4 32 0.00069 35.2 7.2 56 84-139 79-140 (263)
186 PF03808 Glyco_tran_WecB: Glyc 57.7 66 0.0014 30.4 8.8 77 23-103 48-133 (172)
187 cd00381 IMPDH IMPDH: The catal 57.4 1.2E+02 0.0027 31.8 11.6 98 23-124 106-225 (325)
188 TIGR02082 metH 5-methyltetrahy 57.1 75 0.0016 39.4 11.1 102 24-127 733-847 (1178)
189 PRK07695 transcriptional regul 57.1 62 0.0013 31.2 8.7 68 52-123 101-175 (201)
190 TIGR00262 trpA tryptophan synt 57.1 41 0.00089 34.2 7.7 58 83-140 73-137 (256)
191 PF01729 QRPTase_C: Quinolinat 56.9 34 0.00075 32.7 6.7 95 26-124 53-154 (169)
192 COG0157 NadC Nicotinate-nucleo 56.3 97 0.0021 32.2 10.1 93 25-124 160-261 (280)
193 cd04723 HisA_HisF Phosphoribos 55.7 63 0.0014 32.1 8.7 67 56-124 148-217 (233)
194 COG4262 Predicted spermidine s 55.5 42 0.00091 36.3 7.5 65 17-83 307-379 (508)
195 PRK02155 ppnK NAD(+)/NADH kina 55.4 1E+02 0.0023 31.9 10.5 99 25-142 7-119 (291)
196 PLN02591 tryptophan synthase 55.2 2.3E+02 0.0049 28.9 12.6 98 26-126 110-219 (250)
197 cd03818 GT1_ExpC_like This fam 54.9 1E+02 0.0023 32.3 10.7 76 56-142 291-366 (396)
198 cd05212 NAD_bind_m-THF_DH_Cycl 54.8 44 0.00096 30.9 6.9 56 22-81 27-83 (140)
199 COG4122 Predicted O-methyltran 54.6 45 0.00097 33.4 7.3 62 19-81 80-144 (219)
200 PRK02083 imidazole glycerol ph 54.5 1.5E+02 0.0031 29.7 11.2 77 57-136 156-244 (253)
201 PRK06096 molybdenum transport 54.5 53 0.0011 34.1 8.1 70 51-124 194-263 (284)
202 PF04131 NanE: Putative N-acet 54.0 1.6E+02 0.0034 29.0 10.7 97 24-125 65-173 (192)
203 PRK05848 nicotinate-nucleotide 53.9 71 0.0015 33.0 8.8 91 26-124 155-256 (273)
204 PRK14098 glycogen synthase; Pr 53.8 1.6E+02 0.0034 32.7 12.2 112 24-142 337-451 (489)
205 PF09936 Methyltrn_RNA_4: SAM- 53.8 1E+02 0.0022 30.0 9.3 100 25-129 44-162 (185)
206 PRK06774 para-aminobenzoate sy 53.6 18 0.00038 34.7 4.2 48 26-75 2-49 (191)
207 PF00196 GerE: Bacterial regul 53.5 10 0.00023 29.1 2.2 46 221-267 11-57 (58)
208 TIGR01163 rpe ribulose-phospha 53.5 50 0.0011 31.5 7.3 81 41-125 98-193 (210)
209 PRK07259 dihydroorotate dehydr 53.2 2.2E+02 0.0047 29.2 12.5 58 85-142 223-286 (301)
210 cd03819 GT1_WavL_like This fam 53.0 1.7E+02 0.0037 29.3 11.6 109 23-141 216-329 (355)
211 cd03313 enolase Enolase: Enola 53.0 1E+02 0.0022 33.5 10.3 106 30-138 210-351 (408)
212 PRK04180 pyridoxal biosynthesi 52.8 40 0.00087 35.1 6.8 62 83-144 190-258 (293)
213 PF02581 TMP-TENI: Thiamine mo 52.5 64 0.0014 30.6 7.8 70 51-124 100-176 (180)
214 PRK11889 flhF flagellar biosyn 52.0 1.8E+02 0.0038 32.2 11.7 55 23-77 269-328 (436)
215 PRK12726 flagellar biosynthesi 51.2 1.9E+02 0.004 31.7 11.8 101 23-123 234-348 (407)
216 cd01573 modD_like ModD; Quinol 51.0 84 0.0018 32.3 8.9 68 51-124 188-257 (272)
217 PRK04302 triosephosphate isome 50.7 2.5E+02 0.0055 27.5 12.6 79 44-125 111-202 (223)
218 PRK05581 ribulose-phosphate 3- 50.6 75 0.0016 30.6 8.2 56 70-125 132-198 (220)
219 cd01568 QPRTase_NadC Quinolina 50.5 96 0.0021 31.7 9.2 94 25-124 153-254 (269)
220 PLN02781 Probable caffeoyl-CoA 50.4 78 0.0017 31.5 8.4 59 20-78 90-153 (234)
221 PRK09490 metH B12-dependent me 50.4 1.2E+02 0.0026 37.8 11.3 101 24-126 752-865 (1229)
222 PRK01231 ppnK inorganic polyph 50.3 1.6E+02 0.0035 30.6 11.0 104 21-143 2-119 (295)
223 cd03785 GT1_MurG MurG is an N- 50.3 2.6E+02 0.0056 28.4 12.5 65 70-141 253-323 (350)
224 PRK14974 cell division protein 50.0 2.1E+02 0.0046 30.3 11.9 100 23-124 168-286 (336)
225 cd03804 GT1_wbaZ_like This fam 49.9 1.2E+02 0.0026 31.0 9.9 105 24-142 222-326 (351)
226 PF04321 RmlD_sub_bind: RmlD s 49.9 32 0.00069 35.1 5.6 80 24-105 1-102 (286)
227 PRK13125 trpA tryptophan synth 49.8 2E+02 0.0044 28.7 11.3 89 35-126 117-215 (244)
228 PRK13719 conjugal transfer tra 49.8 14 0.0003 36.9 2.8 52 220-272 150-202 (217)
229 cd03825 GT1_wcfI_like This fam 49.7 54 0.0012 33.0 7.3 75 24-102 1-82 (365)
230 cd04732 HisA HisA. Phosphorib 49.4 2.3E+02 0.0049 27.6 11.4 68 55-124 147-218 (234)
231 cd05844 GT1_like_7 Glycosyltra 49.3 2.9E+02 0.0063 27.9 12.7 108 23-141 219-335 (367)
232 PLN02935 Bifunctional NADH kin 49.3 1.3E+02 0.0029 33.7 10.6 101 24-143 195-319 (508)
233 PRK13585 1-(5-phosphoribosyl)- 49.2 2.7E+02 0.0058 27.4 12.0 78 55-134 150-237 (241)
234 PRK10742 putative methyltransf 49.0 1.6E+02 0.0035 30.1 10.3 57 23-82 110-177 (250)
235 PRK03372 ppnK inorganic polyph 48.1 2.2E+02 0.0048 29.8 11.6 101 24-143 6-129 (306)
236 PRK03562 glutathione-regulated 48.0 1E+02 0.0022 35.4 9.9 91 24-123 424-516 (621)
237 PRK05718 keto-hydroxyglutarate 48.0 1.7E+02 0.0037 28.9 10.2 92 41-136 10-104 (212)
238 cd03801 GT1_YqgM_like This fam 47.4 2.7E+02 0.0059 26.9 12.1 74 57-141 267-340 (374)
239 PRK06731 flhF flagellar biosyn 47.3 1.9E+02 0.004 29.8 10.7 54 24-78 104-163 (270)
240 PRK06895 putative anthranilate 47.3 26 0.00057 33.5 4.3 31 24-54 2-32 (190)
241 TIGR00734 hisAF_rel hisA/hisF 46.9 1.2E+02 0.0025 30.1 8.9 68 55-124 142-212 (221)
242 PRK07765 para-aminobenzoate sy 46.7 30 0.00066 34.0 4.7 79 24-103 1-83 (214)
243 COG0742 N6-adenine-specific me 46.7 39 0.00085 33.0 5.4 53 24-77 67-122 (187)
244 cd00429 RPE Ribulose-5-phospha 46.7 67 0.0015 30.5 7.1 55 70-125 128-194 (211)
245 PRK03708 ppnK inorganic polyph 46.6 1.3E+02 0.0029 30.9 9.6 100 24-142 1-112 (277)
246 TIGR03449 mycothiol_MshA UDP-N 46.5 2.8E+02 0.0061 28.8 12.3 107 24-141 253-367 (405)
247 PRK06978 nicotinate-nucleotide 46.5 1.7E+02 0.0037 30.6 10.3 93 25-124 178-276 (294)
248 cd00331 IGPS Indole-3-glycerol 46.4 1.7E+02 0.0037 28.3 10.0 68 72-139 48-117 (217)
249 PLN02589 caffeoyl-CoA O-methyl 46.3 1E+02 0.0022 31.3 8.4 59 20-78 101-165 (247)
250 KOG1562 Spermidine synthase [A 46.2 70 0.0015 33.7 7.3 63 25-89 147-215 (337)
251 PRK06543 nicotinate-nucleotide 45.9 3.1E+02 0.0067 28.5 12.0 93 25-124 161-264 (281)
252 PLN02275 transferase, transfer 45.3 2.6E+02 0.0057 29.2 11.9 104 23-139 261-370 (371)
253 PRK03659 glutathione-regulated 45.3 1.1E+02 0.0024 34.9 9.6 39 85-125 479-518 (601)
254 cd04731 HisF The cyclase subun 45.2 1.2E+02 0.0025 30.1 8.7 69 54-124 27-99 (243)
255 PRK13609 diacylglycerol glucos 45.1 3.1E+02 0.0067 28.5 12.4 104 24-141 231-337 (380)
256 PRK13143 hisH imidazole glycer 44.8 54 0.0012 31.7 6.1 44 24-75 1-44 (200)
257 PLN02476 O-methyltransferase 44.6 1E+02 0.0022 32.0 8.3 59 20-78 140-203 (278)
258 PF01959 DHQS: 3-dehydroquinat 44.6 2E+02 0.0044 30.9 10.6 71 70-141 97-169 (354)
259 TIGR00095 RNA methyltransferas 44.5 80 0.0017 30.4 7.2 67 25-91 74-143 (189)
260 PRK15490 Vi polysaccharide bio 44.3 3.9E+02 0.0084 30.7 13.4 103 24-138 430-534 (578)
261 PRK11359 cyclic-di-GMP phospho 44.3 1.9E+02 0.0041 33.3 11.4 97 39-138 683-793 (799)
262 TIGR00736 nifR3_rel_arch TIM-b 44.0 1.2E+02 0.0025 30.6 8.4 94 28-124 116-219 (231)
263 TIGR01302 IMP_dehydrog inosine 43.9 1.9E+02 0.0042 31.7 10.9 100 22-125 235-356 (450)
264 TIGR02149 glgA_Coryne glycogen 43.9 2.4E+02 0.0053 28.9 11.2 108 23-141 229-351 (388)
265 PRK01033 imidazole glycerol ph 43.9 1.2E+02 0.0026 30.6 8.7 68 56-124 154-225 (258)
266 TIGR01133 murG undecaprenyldip 43.8 3.6E+02 0.0078 27.3 12.9 56 84-141 260-320 (348)
267 cd03806 GT1_ALG11_like This fa 43.7 2.9E+02 0.0062 29.7 12.1 108 23-142 273-392 (419)
268 PRK08007 para-aminobenzoate sy 43.6 30 0.00065 33.2 4.1 48 26-75 2-49 (187)
269 PRK06559 nicotinate-nucleotide 43.4 2.2E+02 0.0047 29.8 10.5 93 25-124 169-268 (290)
270 smart00052 EAL Putative diguan 43.4 1.2E+02 0.0027 28.9 8.4 89 38-129 137-239 (241)
271 cd08179 NADPH_BDH NADPH-depend 43.3 1.9E+02 0.0041 30.8 10.5 63 24-91 24-100 (375)
272 PRK09016 quinolinate phosphori 43.2 1.3E+02 0.0029 31.4 8.9 92 26-124 182-279 (296)
273 PRK00726 murG undecaprenyldiph 43.2 3.9E+02 0.0083 27.4 13.1 54 85-141 263-323 (357)
274 PRK07028 bifunctional hexulose 43.1 3.6E+02 0.0078 29.3 12.7 101 39-142 99-212 (430)
275 PRK04128 1-(5-phosphoribosyl)- 43.0 1.2E+02 0.0026 30.2 8.4 66 55-124 144-210 (228)
276 TIGR03704 PrmC_rel_meth putati 43.0 2.6E+02 0.0056 28.1 10.9 90 23-115 110-228 (251)
277 PRK14722 flhF flagellar biosyn 42.9 1.9E+02 0.0042 31.2 10.4 90 24-114 168-265 (374)
278 cd04949 GT1_gtfA_like This fam 42.9 2.1E+02 0.0046 29.3 10.6 56 82-142 290-345 (372)
279 PRK04338 N(2),N(2)-dimethylgua 42.7 1.3E+02 0.0027 32.6 9.0 78 25-109 83-163 (382)
280 cd04731 HisF The cyclase subun 42.5 1.4E+02 0.003 29.5 8.8 65 58-124 153-222 (243)
281 COG0134 TrpC Indole-3-glycerol 42.3 1.9E+02 0.0041 29.7 9.7 78 43-125 152-236 (254)
282 cd01948 EAL EAL domain. This d 42.3 92 0.002 29.8 7.3 88 39-129 137-238 (240)
283 TIGR01163 rpe ribulose-phospha 42.3 2.4E+02 0.0052 26.8 10.1 56 83-138 43-99 (210)
284 PRK13170 hisH imidazole glycer 42.2 66 0.0014 31.1 6.2 44 24-75 1-44 (196)
285 PRK00811 spermidine synthase; 42.1 2.7E+02 0.0058 28.5 11.0 58 21-81 98-162 (283)
286 cd04951 GT1_WbdM_like This fam 42.1 2E+02 0.0044 28.7 10.1 105 23-141 219-325 (360)
287 PRK06106 nicotinate-nucleotide 42.1 1.6E+02 0.0034 30.7 9.2 92 26-124 167-265 (281)
288 PRK13789 phosphoribosylamine-- 42.0 3E+02 0.0065 30.0 11.9 62 22-85 3-84 (426)
289 PF01081 Aldolase: KDPG and KH 41.8 66 0.0014 31.6 6.1 60 72-132 34-94 (196)
290 COG3836 HpcH 2,4-dihydroxyhept 41.2 2.4E+02 0.0053 28.8 10.0 93 38-133 7-104 (255)
291 PRK01362 putative translaldola 41.1 1.8E+02 0.0039 28.9 9.1 81 42-125 96-185 (214)
292 PF03102 NeuB: NeuB family; I 41.0 1.1E+02 0.0023 31.0 7.7 85 34-123 56-144 (241)
293 cd08187 BDH Butanol dehydrogen 40.8 1.9E+02 0.004 30.9 10.0 63 24-91 29-105 (382)
294 cd04724 Tryptophan_synthase_al 40.6 1.9E+02 0.004 29.0 9.4 97 26-125 108-215 (242)
295 cd03799 GT1_amsK_like This is 40.5 2.8E+02 0.006 27.6 10.8 76 56-141 246-326 (355)
296 PRK08649 inosine 5-monophospha 40.4 4.2E+02 0.0091 28.5 12.5 66 55-124 142-214 (368)
297 PRK02649 ppnK inorganic polyph 40.3 2.1E+02 0.0045 30.0 9.9 100 25-143 3-125 (305)
298 PRK09140 2-dehydro-3-deoxy-6-p 40.2 2.6E+02 0.0056 27.4 10.1 84 52-137 17-101 (206)
299 PLN02823 spermine synthase 40.1 64 0.0014 34.2 6.2 55 23-80 127-187 (336)
300 PRK06512 thiamine-phosphate py 39.9 2.2E+02 0.0048 28.2 9.7 67 54-124 119-191 (221)
301 cd03812 GT1_CapH_like This fam 39.9 2.5E+02 0.0054 28.2 10.4 108 23-143 223-332 (358)
302 PRK06015 keto-hydroxyglutarate 39.5 2E+02 0.0043 28.4 9.1 56 74-130 32-88 (201)
303 PRK05637 anthranilate synthase 39.3 50 0.0011 32.4 5.0 49 24-75 2-50 (208)
304 cd02801 DUS_like_FMN Dihydrour 39.3 3.5E+02 0.0076 26.1 11.0 92 31-124 107-212 (231)
305 KOG3111 D-ribulose-5-phosphate 39.2 3.5E+02 0.0076 26.9 10.4 110 25-141 94-218 (224)
306 PRK03522 rumB 23S rRNA methylu 38.9 1.8E+02 0.0039 30.2 9.3 78 23-106 195-276 (315)
307 TIGR03061 pip_yhgE_Nterm YhgE/ 38.7 81 0.0018 29.3 6.1 79 22-106 42-131 (164)
308 TIGR00511 ribulose_e2b2 ribose 38.5 1.2E+02 0.0026 31.6 7.9 80 22-106 140-227 (301)
309 TIGR00696 wecB_tagA_cpsF bacte 38.5 2E+02 0.0044 27.6 8.9 76 22-101 47-130 (177)
310 PLN02335 anthranilate synthase 38.3 40 0.00087 33.4 4.1 78 22-103 17-98 (222)
311 cd03808 GT1_cap1E_like This fa 38.2 2.8E+02 0.0061 27.0 10.2 53 83-141 276-328 (359)
312 PRK08535 translation initiatio 38.2 1.3E+02 0.0029 31.4 8.1 80 22-106 145-232 (310)
313 TIGR01182 eda Entner-Doudoroff 38.1 2.5E+02 0.0054 27.7 9.6 79 52-134 15-95 (204)
314 COG2200 Rtn c-di-GMP phosphodi 37.9 2.9E+02 0.0062 27.8 10.3 99 36-137 138-250 (256)
315 cd03798 GT1_wlbH_like This fam 37.9 2.7E+02 0.0058 27.2 10.0 53 84-142 292-344 (377)
316 PRK14723 flhF flagellar biosyn 37.8 2.6E+02 0.0056 33.2 11.1 102 24-126 216-333 (767)
317 PRK13566 anthranilate synthase 37.8 46 0.001 38.9 5.1 78 22-103 525-605 (720)
318 TIGR01302 IMP_dehydrog inosine 37.8 1.2E+02 0.0026 33.4 8.1 64 57-124 227-292 (450)
319 TIGR00064 ftsY signal recognit 37.6 3.2E+02 0.0069 27.9 10.7 90 23-114 100-210 (272)
320 PF07279 DUF1442: Protein of u 37.6 1.7E+02 0.0036 29.4 8.2 71 25-102 72-147 (218)
321 cd06304 PBP1_BmpA_like Peripla 37.3 2.1E+02 0.0046 27.9 9.1 69 32-105 13-89 (260)
322 PLN02716 nicotinate-nucleotide 37.2 2.4E+02 0.0053 29.7 9.8 99 26-124 173-289 (308)
323 TIGR00735 hisF imidazoleglycer 37.2 2.3E+02 0.0049 28.5 9.4 71 54-125 30-103 (254)
324 CHL00101 trpG anthranilate syn 37.1 44 0.00095 32.1 4.1 48 26-75 2-49 (190)
325 CHL00200 trpA tryptophan synth 37.1 4.7E+02 0.01 26.7 12.0 100 24-126 120-232 (263)
326 TIGR01306 GMP_reduct_2 guanosi 37.1 5.3E+02 0.012 27.3 12.6 98 25-125 110-227 (321)
327 PF04309 G3P_antiterm: Glycero 36.7 49 0.0011 32.0 4.3 62 56-123 106-167 (175)
328 PRK05670 anthranilate synthase 36.7 48 0.001 31.6 4.3 48 26-75 2-49 (189)
329 cd00532 MGS-like MGS-like doma 36.5 88 0.0019 27.3 5.6 25 29-53 7-31 (112)
330 PRK02615 thiamine-phosphate py 36.4 2.9E+02 0.0064 29.5 10.5 69 52-124 246-321 (347)
331 cd06338 PBP1_ABC_ligand_bindin 36.4 4.4E+02 0.0095 26.7 11.6 65 36-104 158-230 (345)
332 PRK03378 ppnK inorganic polyph 36.4 2.7E+02 0.0059 28.9 10.0 99 25-142 7-119 (292)
333 TIGR00875 fsa_talC_mipB fructo 36.2 1.9E+02 0.0042 28.7 8.5 81 42-126 96-186 (213)
334 cd00405 PRAI Phosphoribosylant 36.1 2.1E+02 0.0045 27.5 8.7 54 68-124 119-180 (203)
335 PRK08072 nicotinate-nucleotide 36.1 2.7E+02 0.0058 28.8 9.8 91 25-124 160-259 (277)
336 COG1748 LYS9 Saccharopine dehy 36.1 3E+02 0.0066 29.9 10.6 17 200-216 243-259 (389)
337 TIGR00737 nifR3_yhdG putative 36.0 3.7E+02 0.0081 27.9 11.1 93 30-124 114-221 (319)
338 TIGR00417 speE spermidine synt 36.0 2.5E+02 0.0054 28.4 9.6 56 23-81 96-157 (270)
339 cd03807 GT1_WbnK_like This fam 35.9 3.9E+02 0.0085 26.1 10.9 64 70-142 269-332 (365)
340 cd03805 GT1_ALG2_like This fam 35.9 4.6E+02 0.01 26.9 11.8 108 23-142 245-364 (392)
341 PRK13125 trpA tryptophan synth 35.9 1.4E+02 0.0031 29.8 7.7 54 86-139 64-125 (244)
342 PF01008 IF-2B: Initiation fac 35.7 55 0.0012 33.2 4.8 79 23-105 133-219 (282)
343 cd05013 SIS_RpiR RpiR-like pro 35.5 2.9E+02 0.0062 23.7 10.2 84 25-110 15-101 (139)
344 PRK00654 glgA glycogen synthas 35.5 4E+02 0.0088 28.9 11.8 108 24-142 312-428 (466)
345 PRK04885 ppnK inorganic polyph 35.4 2.2E+02 0.0049 29.1 9.1 73 36-142 17-93 (265)
346 TIGR01579 MiaB-like-C MiaB-lik 35.3 2.7E+02 0.0059 29.9 10.3 92 34-139 11-107 (414)
347 KOG3040 Predicted sugar phosph 35.2 39 0.00085 33.8 3.4 95 24-143 40-138 (262)
348 COG0673 MviM Predicted dehydro 35.1 4.7E+02 0.01 26.6 11.6 107 23-141 3-116 (342)
349 cd08185 Fe-ADH1 Iron-containin 35.0 1.9E+02 0.0041 30.8 8.9 63 24-91 26-102 (380)
350 PF04131 NanE: Putative N-acet 34.8 1E+02 0.0022 30.3 6.1 71 47-124 45-117 (192)
351 PRK00748 1-(5-phosphoribosyl)- 34.8 2.2E+02 0.0048 27.7 8.8 72 54-126 30-104 (233)
352 cd06354 PBP1_BmpA_PnrA_like Pe 34.6 2.2E+02 0.0047 28.0 8.8 64 36-104 21-89 (265)
353 cd04740 DHOD_1B_like Dihydroor 34.3 5.1E+02 0.011 26.3 13.0 57 85-141 220-282 (296)
354 PRK15201 fimbriae regulatory p 34.3 38 0.00082 33.1 3.0 41 228-268 147-188 (198)
355 PRK09860 putative alcohol dehy 34.2 2.6E+02 0.0056 30.0 9.8 63 24-91 32-107 (383)
356 PRK00025 lpxB lipid-A-disaccha 34.2 4.8E+02 0.01 26.9 11.7 22 120-141 319-340 (380)
357 TIGR01305 GMP_reduct_1 guanosi 34.2 1.8E+02 0.0039 31.1 8.3 57 69-125 121-178 (343)
358 KOG4175 Tryptophan synthase al 34.2 1.1E+02 0.0025 30.4 6.3 41 95-135 94-140 (268)
359 cd01572 QPRTase Quinolinate ph 34.1 2.8E+02 0.006 28.4 9.6 91 25-124 154-253 (268)
360 PRK05458 guanosine 5'-monophos 34.0 1.4E+02 0.0031 31.6 7.5 65 57-123 100-166 (326)
361 PF00977 His_biosynth: Histidi 33.7 1.7E+02 0.0037 29.0 7.8 69 55-124 148-219 (229)
362 PF01564 Spermine_synth: Sperm 33.7 76 0.0016 32.0 5.3 63 19-84 96-165 (246)
363 PRK06843 inosine 5-monophospha 33.7 1.8E+02 0.0039 31.8 8.5 55 69-124 165-221 (404)
364 TIGR00078 nadC nicotinate-nucl 33.4 3.1E+02 0.0066 28.1 9.7 91 25-124 150-249 (265)
365 PRK04457 spermidine synthase; 33.4 3.8E+02 0.0082 27.1 10.4 52 23-77 90-144 (262)
366 cd08194 Fe-ADH6 Iron-containin 33.3 3.1E+02 0.0068 29.1 10.2 63 24-91 24-99 (375)
367 PLN02898 HMP-P kinase/thiamin- 33.2 2.1E+02 0.0044 31.9 9.1 65 52-120 396-467 (502)
368 cd06346 PBP1_ABC_ligand_bindin 33.2 4.8E+02 0.01 26.3 11.2 68 37-108 155-230 (312)
369 TIGR00479 rumA 23S rRNA (uraci 33.1 3.1E+02 0.0067 29.7 10.3 80 24-105 315-397 (431)
370 PRK02290 3-dehydroquinate synt 33.0 3.4E+02 0.0074 29.1 10.1 68 70-139 89-158 (344)
371 PRK13146 hisH imidazole glycer 33.0 1.1E+02 0.0023 30.0 6.1 45 23-75 1-47 (209)
372 PRK11829 biofilm formation reg 32.9 3.1E+02 0.0067 31.1 10.7 95 37-136 542-652 (660)
373 cd02911 arch_FMN Archeal FMN-b 32.8 5.1E+02 0.011 25.8 12.2 90 30-124 123-219 (233)
374 cd04726 KGPDC_HPS 3-Keto-L-gul 32.8 1.5E+02 0.0033 28.1 7.0 45 83-127 39-86 (202)
375 PF03328 HpcH_HpaI: HpcH/HpaI 32.7 2.9E+02 0.0063 26.9 9.2 84 54-139 8-106 (221)
376 COG0352 ThiE Thiamine monophos 32.6 2.2E+02 0.0047 28.3 8.2 69 52-124 110-185 (211)
377 cd02809 alpha_hydroxyacid_oxid 32.5 4.2E+02 0.0091 27.2 10.7 69 53-124 180-255 (299)
378 PF00290 Trp_syntA: Tryptophan 32.4 78 0.0017 32.4 5.2 57 85-141 75-138 (259)
379 PLN02819 lysine-ketoglutarate 32.4 5.1E+02 0.011 32.0 12.7 113 23-141 569-694 (1042)
380 PRK06372 translation initiatio 32.4 2.2E+02 0.0047 29.2 8.3 77 24-105 110-194 (253)
381 TIGR03128 RuMP_HxlA 3-hexulose 32.3 4.5E+02 0.0097 25.0 13.7 83 36-124 91-185 (206)
382 cd00886 MogA_MoaB MogA_MoaB fa 32.1 1E+02 0.0022 28.5 5.6 52 25-76 4-68 (152)
383 PRK12723 flagellar biosynthesi 32.1 5.2E+02 0.011 28.0 11.7 91 23-115 206-306 (388)
384 PRK10060 RNase II stability mo 32.0 3.6E+02 0.0078 31.0 11.1 99 37-138 544-656 (663)
385 cd02810 DHOD_DHPD_FMN Dihydroo 31.9 4E+02 0.0087 26.9 10.4 39 85-123 230-270 (289)
386 TIGR01425 SRP54_euk signal rec 31.9 4.1E+02 0.0089 29.3 10.9 98 23-124 128-246 (429)
387 PLN02617 imidazole glycerol ph 31.8 3.5E+02 0.0077 30.7 10.7 68 70-137 453-530 (538)
388 PRK04128 1-(5-phosphoribosyl)- 31.8 4.9E+02 0.011 25.8 10.7 68 54-124 30-101 (228)
389 cd03816 GT1_ALG1_like This fam 31.8 6.1E+02 0.013 27.0 12.3 107 23-142 269-381 (415)
390 TIGR03499 FlhF flagellar biosy 31.8 1.3E+02 0.0029 30.7 6.9 53 24-77 225-280 (282)
391 PRK15128 23S rRNA m(5)C1962 me 31.7 1.7E+02 0.0036 31.8 7.8 54 24-77 244-301 (396)
392 PRK10415 tRNA-dihydrouridine s 31.7 3.8E+02 0.0083 28.0 10.4 95 28-124 114-223 (321)
393 COG0626 MetC Cystathionine bet 31.7 4E+02 0.0087 29.1 10.7 99 22-124 101-206 (396)
394 COG0118 HisH Glutamine amidotr 31.6 80 0.0017 31.3 4.8 37 23-59 1-37 (204)
395 PRK08335 translation initiatio 31.6 2.1E+02 0.0045 29.7 8.1 78 23-105 135-220 (275)
396 PRK13695 putative NTPase; Prov 31.6 3.8E+02 0.0082 24.8 9.4 72 68-140 95-172 (174)
397 cd08176 LPO Lactadehyde:propan 31.4 3.3E+02 0.0071 29.0 10.0 63 24-91 29-104 (377)
398 TIGR01304 IMP_DH_rel_2 IMP deh 31.4 7E+02 0.015 26.9 12.4 66 55-124 143-215 (369)
399 cd00956 Transaldolase_FSA Tran 31.2 3.1E+02 0.0066 27.0 9.0 71 52-126 108-186 (211)
400 TIGR00959 ffh signal recogniti 31.1 4.4E+02 0.0095 29.0 11.0 84 23-108 128-226 (428)
401 PRK14076 pnk inorganic polypho 31.1 2E+02 0.0043 32.7 8.6 101 24-143 291-405 (569)
402 cd03316 MR_like Mandelate race 30.9 2.9E+02 0.0062 28.9 9.4 43 85-127 229-272 (357)
403 PRK00994 F420-dependent methyl 30.9 3.6E+02 0.0078 27.7 9.3 79 45-126 29-116 (277)
404 TIGR03572 WbuZ glycosyl amidat 30.9 2.9E+02 0.0062 27.1 8.9 66 57-124 156-226 (232)
405 cd06284 PBP1_LacI_like_6 Ligan 30.7 2.6E+02 0.0057 26.7 8.5 62 35-103 17-84 (267)
406 cd08181 PPD-like 1,3-propanedi 30.7 3.8E+02 0.0083 28.3 10.3 63 24-91 26-102 (357)
407 cd03795 GT1_like_4 This family 30.5 5.5E+02 0.012 25.5 13.5 109 23-142 218-332 (357)
408 COG1091 RfbD dTDP-4-dehydrorha 30.5 1E+02 0.0022 32.0 5.7 57 24-83 1-64 (281)
409 cd03794 GT1_wbuB_like This fam 30.5 4.9E+02 0.011 25.6 10.6 50 86-141 315-364 (394)
410 COG0159 TrpA Tryptophan syntha 30.3 1.7E+02 0.0037 30.2 7.2 58 85-142 82-146 (265)
411 cd02940 DHPD_FMN Dihydropyrimi 30.3 3.2E+02 0.0069 28.1 9.4 40 85-124 239-280 (299)
412 cd00758 MoCF_BD MoCF_BD: molyb 30.2 1.6E+02 0.0036 26.4 6.5 43 34-76 19-65 (133)
413 PRK05031 tRNA (uracil-5-)-meth 30.0 5.3E+02 0.011 27.4 11.2 77 25-106 230-322 (362)
414 TIGR03572 WbuZ glycosyl amidat 30.0 3E+02 0.0065 26.9 8.8 70 54-125 30-103 (232)
415 TIGR01361 DAHP_synth_Bsub phos 29.9 2.2E+02 0.0048 29.0 8.0 90 39-129 124-234 (260)
416 PRK03604 moaC bifunctional mol 29.8 1.6E+02 0.0035 31.0 7.1 64 12-75 144-221 (312)
417 PRK10416 signal recognition pa 29.8 5.8E+02 0.013 26.8 11.3 91 23-115 142-253 (318)
418 cd08170 GlyDH Glycerol dehydro 29.7 2.6E+02 0.0056 29.3 8.8 76 24-104 23-109 (351)
419 cd03811 GT1_WabH_like This fam 29.7 5.1E+02 0.011 25.0 10.4 65 70-141 264-328 (353)
420 KOG1467 Translation initiation 29.6 1.5E+02 0.0032 33.2 6.9 79 22-105 384-470 (556)
421 PRK08999 hypothetical protein; 29.6 2.3E+02 0.0049 29.1 8.2 68 52-123 232-306 (312)
422 TIGR00524 eIF-2B_rel eIF-2B al 29.2 1.3E+02 0.0029 31.4 6.4 81 23-106 152-241 (303)
423 COG0313 Predicted methyltransf 29.2 4.5E+02 0.0097 27.4 9.9 81 23-108 30-118 (275)
424 PRK14967 putative methyltransf 29.1 5.3E+02 0.011 25.0 10.3 47 25-76 61-108 (223)
425 cd06281 PBP1_LacI_like_5 Ligan 29.0 3.3E+02 0.0072 26.3 9.0 67 34-105 16-88 (269)
426 cd03817 GT1_UGDG_like This fam 29.0 5.6E+02 0.012 25.1 11.1 65 70-142 279-343 (374)
427 PF00497 SBP_bac_3: Bacterial 28.9 1.9E+02 0.0042 26.6 7.0 52 22-77 109-160 (225)
428 PRK10423 transcriptional repre 28.8 2.5E+02 0.0055 28.2 8.3 64 36-104 75-144 (327)
429 cd06296 PBP1_CatR_like Ligand- 28.7 3.2E+02 0.007 26.3 8.8 66 34-105 16-87 (270)
430 KOG1203 Predicted dehydrogenas 28.7 1.6E+02 0.0034 32.4 6.9 73 18-92 74-147 (411)
431 COG2070 Dioxygenases related t 28.6 2.4E+02 0.0052 29.9 8.3 74 46-122 126-210 (336)
432 PRK12727 flagellar biosynthesi 28.5 4.8E+02 0.01 29.9 10.8 54 24-78 381-437 (559)
433 PRK11572 copper homeostasis pr 28.4 3.6E+02 0.0077 27.6 9.0 92 31-124 98-197 (248)
434 PRK14329 (dimethylallyl)adenos 28.3 3.2E+02 0.0068 30.2 9.5 104 23-140 23-139 (467)
435 PRK00771 signal recognition pa 28.3 6.8E+02 0.015 27.6 11.9 86 23-109 123-220 (437)
436 PLN02316 synthase/transferase 28.2 7E+02 0.015 30.8 12.8 70 70-142 920-998 (1036)
437 KOG1601 GATA-4/5/6 transcripti 28.2 17 0.00037 35.4 -0.4 118 19-139 12-136 (340)
438 COG2109 BtuR ATP:corrinoid ade 28.1 2E+02 0.0043 28.4 6.8 46 69-114 122-172 (198)
439 cd06282 PBP1_GntR_like_2 Ligan 28.0 3.6E+02 0.0078 25.7 9.0 66 35-105 17-88 (266)
440 PLN02366 spermidine synthase 28.0 2.4E+02 0.0051 29.5 8.0 60 20-81 112-177 (308)
441 PRK09522 bifunctional glutamin 27.9 91 0.002 35.2 5.2 76 24-103 2-84 (531)
442 PRK09496 trkA potassium transp 27.9 3.9E+02 0.0085 28.6 10.0 96 23-124 23-123 (453)
443 cd04946 GT1_AmsK_like This fam 27.9 5.7E+02 0.012 27.2 11.2 108 24-141 264-376 (407)
444 PRK12656 fructose-6-phosphate 27.7 3.6E+02 0.0078 27.0 8.9 80 43-126 101-190 (222)
445 COG2265 TrmA SAM-dependent met 27.5 4.8E+02 0.01 28.8 10.5 80 23-106 315-398 (432)
446 COG1927 Mtd Coenzyme F420-depe 27.5 5.6E+02 0.012 25.8 9.8 80 45-126 29-117 (277)
447 TIGR03569 NeuB_NnaB N-acetylne 27.4 2.9E+02 0.0062 29.3 8.5 77 34-115 76-152 (329)
448 cd08551 Fe-ADH iron-containing 27.3 3.4E+02 0.0073 28.7 9.2 63 24-91 24-99 (370)
449 PRK05437 isopentenyl pyrophosp 27.2 6.5E+02 0.014 26.7 11.3 87 35-124 174-289 (352)
450 PRK02228 V-type ATP synthase s 27.2 4.1E+02 0.0089 23.0 10.2 75 24-104 1-78 (100)
451 PF00249 Myb_DNA-binding: Myb- 27.2 1.3E+02 0.0028 22.1 4.3 42 195-239 3-44 (48)
452 PRK07455 keto-hydroxyglutarate 27.0 5.3E+02 0.011 24.8 9.7 82 49-132 16-98 (187)
453 PRK05567 inosine 5'-monophosph 27.0 2.7E+02 0.0059 30.9 8.7 65 57-124 230-296 (486)
454 COG3967 DltE Short-chain dehyd 26.9 3.3E+02 0.0071 27.5 8.2 78 24-103 6-85 (245)
455 PRK06806 fructose-bisphosphate 26.8 3E+02 0.0065 28.5 8.4 71 52-124 151-229 (281)
456 PRK08883 ribulose-phosphate 3- 26.5 2.5E+02 0.0055 27.8 7.6 54 70-124 129-194 (220)
457 PRK02083 imidazole glycerol ph 26.5 4.7E+02 0.01 26.0 9.7 71 54-125 30-103 (253)
458 PRK00941 acetyl-CoA decarbonyl 26.5 9.6E+02 0.021 28.7 13.1 115 22-142 236-383 (781)
459 TIGR00236 wecB UDP-N-acetylglu 26.5 7.3E+02 0.016 25.6 12.8 42 95-141 292-333 (365)
460 cd03114 ArgK-like The function 26.4 1.8E+02 0.0039 26.7 6.1 44 56-105 80-123 (148)
461 PRK06371 translation initiatio 26.3 2.3E+02 0.005 30.2 7.5 79 23-104 170-257 (329)
462 PRK11036 putative S-adenosyl-L 26.2 5.9E+02 0.013 25.2 10.3 66 23-91 66-135 (255)
463 TIGR02990 ectoine_eutA ectoine 26.2 3.1E+02 0.0068 27.6 8.3 74 25-100 122-210 (239)
464 COG3959 Transketolase, N-termi 26.2 1.1E+02 0.0024 31.0 4.8 54 26-79 174-242 (243)
465 PRK08185 hypothetical protein; 26.2 2.4E+02 0.0051 29.3 7.5 82 53-141 148-240 (283)
466 PRK01581 speE spermidine synth 26.2 4E+02 0.0087 28.9 9.4 57 21-80 172-237 (374)
467 PRK07807 inosine 5-monophospha 26.2 5.8E+02 0.012 28.5 11.0 99 23-124 239-358 (479)
468 PRK10909 rsmD 16S rRNA m(2)G96 26.1 5E+02 0.011 25.3 9.4 78 24-106 77-161 (199)
469 cd08171 GlyDH-like2 Glycerol d 26.1 3.2E+02 0.007 28.6 8.7 76 24-104 23-110 (345)
470 PRK03612 spermidine synthase; 26.1 3.9E+02 0.0084 30.0 9.8 58 21-81 319-385 (521)
471 PRK14024 phosphoribosyl isomer 26.1 4.5E+02 0.0098 26.1 9.4 78 57-135 149-238 (241)
472 cd02811 IDI-2_FMN Isopentenyl- 25.8 6.1E+02 0.013 26.6 10.7 87 35-124 166-283 (326)
473 cd01541 PBP1_AraR Ligand-bindi 25.8 3.8E+02 0.0082 25.9 8.7 68 34-104 16-91 (273)
474 PRK12655 fructose-6-phosphate 25.7 4E+02 0.0086 26.6 8.8 81 42-126 98-188 (220)
475 cd04733 OYE_like_2_FMN Old yel 25.7 2.3E+02 0.0049 29.8 7.4 40 85-124 281-320 (338)
476 cd08182 HEPD Hydroxyethylphosp 25.6 3.8E+02 0.0082 28.3 9.2 63 24-91 24-96 (367)
477 PRK12653 fructose-6-phosphate 25.6 4E+02 0.0086 26.6 8.7 81 42-126 98-188 (220)
478 COG2247 LytB Putative cell wal 25.5 3.3E+02 0.0072 29.0 8.3 28 25-52 78-105 (337)
479 cd01575 PBP1_GntR Ligand-bindi 25.5 4.2E+02 0.0091 25.3 8.9 63 35-103 17-85 (268)
480 cd02930 DCR_FMN 2,4-dienoyl-Co 25.4 3.9E+02 0.0085 28.2 9.3 40 85-124 265-304 (353)
481 PRK02090 phosphoadenosine phos 25.4 3E+02 0.0065 27.4 8.0 75 34-108 27-105 (241)
482 cd08174 G1PDH-like Glycerol-1- 25.4 3.8E+02 0.0082 27.9 9.0 75 24-103 26-106 (331)
483 COG0077 PheA Prephenate dehydr 25.3 1.5E+02 0.0033 30.8 5.8 80 26-105 99-183 (279)
484 PRK13111 trpA tryptophan synth 25.3 7.3E+02 0.016 25.2 12.2 98 26-126 121-229 (258)
485 PRK15454 ethanol dehydrogenase 25.3 3E+02 0.0064 29.7 8.4 63 24-91 50-125 (395)
486 PRK13523 NADPH dehydrogenase N 25.3 1.9E+02 0.0042 30.6 6.8 40 85-124 264-303 (337)
487 PF00532 Peripla_BP_1: Peripla 25.2 3E+02 0.0065 27.8 8.0 66 35-106 19-89 (279)
488 cd05014 SIS_Kpsf KpsF-like pro 25.2 2.5E+02 0.0054 24.3 6.6 87 32-126 11-99 (128)
489 cd04736 MDH_FMN Mandelate dehy 25.2 4.3E+02 0.0092 28.5 9.4 84 38-124 227-317 (361)
490 COG2089 SpsE Sialic acid synth 25.1 4.4E+02 0.0095 28.2 9.2 86 34-124 90-179 (347)
491 PF00563 EAL: EAL domain; Int 25.1 1.1E+02 0.0025 29.0 4.8 82 37-122 138-228 (236)
492 cd01571 NAPRTase_B Nicotinate 25.0 2.7E+02 0.0058 29.1 7.7 65 56-122 198-270 (302)
493 TIGR00138 gidB 16S rRNA methyl 25.0 6E+02 0.013 24.1 10.5 83 23-113 66-152 (181)
494 COG3010 NanE Putative N-acetyl 25.0 7.2E+02 0.016 25.0 10.3 100 23-126 98-210 (229)
495 PRK05286 dihydroorotate dehydr 25.0 5.8E+02 0.013 26.9 10.4 55 87-141 278-341 (344)
496 TIGR00512 salvage_mtnA S-methy 24.9 2.5E+02 0.0054 29.9 7.5 81 23-106 180-269 (331)
497 PRK01033 imidazole glycerol ph 24.9 4.2E+02 0.009 26.7 9.0 72 53-125 29-103 (258)
498 TIGR02855 spore_yabG sporulati 24.8 1.4E+02 0.0029 31.1 5.3 54 20-75 101-159 (283)
499 PRK06552 keto-hydroxyglutarate 24.6 6.5E+02 0.014 24.9 10.0 93 41-135 8-104 (213)
500 PRK05742 nicotinate-nucleotide 24.6 6.2E+02 0.014 26.1 10.2 64 52-124 195-260 (277)
No 1
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=295.77 Aligned_cols=243 Identities=26% Similarity=0.339 Sum_probs=185.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-C---CCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-E---MDL 97 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~---~di 97 (524)
..++||+|||++..+..+..+|+..+|+|..|.++++|++++.++. +|+||+|++||+|||+++|.+|+. . ..+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 4589999999999999999999999999999999999999988765 999999999999999999999975 3 468
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccCCCcccCCCchhH-HHhhhhhccCCCCCcc---
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEF-EKSYRKRKDQDGEDED--- 173 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~e~--- 173 (524)
|||++|+..|.+...+++..||+|||.||+++.+|..++...+..+.......++..... .+..++..+ ....+.
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~~~~~~~le~~e~~~~~~e-~~~~~~~~~ 169 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLLDQNLYLELQELRRRTEE-LAQIEDNLD 169 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999766644322211111111111 000000000 000000
Q ss_pred c---cCCCCCCCccccccCCCCceEeeHHHHHHHHHHHHHcCCCC------------------CchHHHHhhcCCCCCCH
Q 009824 174 E---DGDDDGHENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDK------------------AVPKKILDLMNVEGLTR 232 (524)
Q Consensus 174 E---~~~~~~~~~e~~s~~kk~rvvw~veLh~kflaavn~LGl~~------------------avPk~IL~lmk~~~LT~ 232 (524)
+ ......+.++..++ +|+.+++.+.+.++.. +|+++ ++||.|| +||+.||.
T Consensus 170 ~t~~~L~~~~E~R~~etg----~H~~Rv~~~~~~lAe~--lgLse~~v~~i~~AapLHDIGKvaiPD~IL--lKpg~Lt~ 241 (360)
T COG3437 170 ETLEELAALLEVRDYETG----DHLERVAQYSELLAEL--LGLSEEEVDLIKKAAPLHDIGKVAIPDSIL--LKPGKLTS 241 (360)
T ss_pred HHHHHHHHHHHhcccchh----hHHHHHHHHHHHHHHH--hCCCHHHHHHHHhccchhhcccccCChHHh--cCCCCCCH
Confidence 0 00001122222333 5556666667666554 78775 9999999 99999999
Q ss_pred HhHHhhhhhcccchhhhhhhHHHhhcCCCchhhhhhhhhccCCCcccCCCCc
Q 009824 233 ENVKFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPGR 284 (524)
Q Consensus 233 eevk~rL~mKr~t~~~q~~~~~~~L~~sd~~ll~~aa~igl~hhe~~dGsGy 284 (524)
+| |.+ ||.|+. .|+.+|..+.. +++.|++||+.|||||||+||
T Consensus 242 ee--~~i-mk~H~~-----~G~~il~~s~~-~mq~a~eIa~~HHErwDGsGY 284 (360)
T COG3437 242 EE--FEI-MKGHPI-----LGAEILKSSER-LMQVAAEIARHHHERWDGSGY 284 (360)
T ss_pred HH--HHH-HhcchH-----HHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCC
Confidence 99 888 999998 88889987654 999999999999999999999
No 2
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.91 E-value=8.1e-24 Score=200.20 Aligned_cols=184 Identities=21% Similarity=0.270 Sum_probs=147.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
...-|.|||||..+|+.+..+|+..||+|.++.++++.|..... ..|.++|+|+.||+++|++|.+++. ....+|||
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEE
Confidence 34569999999999999999999999999999999999998533 4599999999999999999999885 56789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccCCCcccCCCchhHHHhhhhhccCCCCCccccCCCCC
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFEKSYRKRKDQDGEDEDEDGDDDG 180 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~e~E~~~~~~ 180 (524)
|+|+++|.....++++.||.|||.|||+.+.|+.++++++++...... ..........+..+++++|++
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~-----~~~~~~~~~~~l~tLT~RERq------ 149 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRA-----EADRQAAIRARLATLTPRERQ------ 149 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhcCHHHHH------
Confidence 999999999999999999999999999999999999999887532211 111223333444444433332
Q ss_pred CCccccccCCCCceEeeHHHHHHHHHHHHHcCCCCCchHHHHhhcCCCCCCHHhHHhhhhhcccc
Q 009824 181 HENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVKFRLSLKRLG 245 (524)
Q Consensus 181 ~~~e~~s~~kk~rvvw~veLh~kflaavn~LGl~~avPk~IL~lmk~~~LT~eevk~rL~mKr~t 245 (524)
.+..+ ..+..+|+|+..|+++..|+|-|+.+++.|..+
T Consensus 150 -----------------------Vl~~v----V~G~~NKqIA~dLgiS~rTVe~HRanvM~Km~a 187 (202)
T COG4566 150 -----------------------VLDLV----VRGLMNKQIAFDLGISERTVELHRANVMEKMQA 187 (202)
T ss_pred -----------------------HHHHH----HcCcccHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 12222 346789999999999999999999999555544
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.87 E-value=2.5e-21 Score=191.68 Aligned_cols=118 Identities=36% Similarity=0.568 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--CCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~diPVIv 101 (524)
++||||||++..+..|...|+..||+|..+.++.+|++.+.. . ||+||+|++||++||+++|+++|. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999999999999999999999874 3 999999999999999999999983 46789999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+.++......++++||+|||.|||++.||..+++.++|+..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999999864
No 4
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.87 E-value=3.7e-21 Score=188.09 Aligned_cols=122 Identities=33% Similarity=0.432 Sum_probs=111.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
++|+||||+|.++..|+.+|+.. +++|+ .+.++.++++.++... ||+||+|+.||+++|+++++.++ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 57999999999999999999875 48877 6778999999977654 99999999999999999999996 67899999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccCCC
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDP 147 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~~~ 147 (524)
++|.+.+...+.+++++||.+|+.|..+.++|..+|+.+..+..+.+
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~ 125 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLP 125 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeC
Confidence 99999999999999999999999999999999999999998875443
No 5
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.82 E-value=6.5e-20 Score=196.21 Aligned_cols=119 Identities=31% Similarity=0.517 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLR--ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~--~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diP 98 (524)
+++||||||++.+|++|+.++. .+|++|+ +|.+|.+|++.+++.. |||||+|++||+|||++|++.++ ..|++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 3689999999999999999995 4799988 8999999999999875 99999999999999999999996 578999
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|++|++.+.+++.+|+++|+.|||+||++.++|..++.++..+.
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987653
No 6
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.81 E-value=2.4e-19 Score=192.02 Aligned_cols=119 Identities=34% Similarity=0.580 Sum_probs=112.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
.+|||||||+.++..++..|+..||+|..+.++.+|++++... .+|+||+|+.||++||+++++.++ ..+++|||++
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 5699999999999999999999999999999999999999875 499999999999999999999885 5689999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++++.+.+.+|++.||+|||.|||+.+.|...+.+++...+
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988644
No 7
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=6.5e-19 Score=169.90 Aligned_cols=119 Identities=25% Similarity=0.506 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
++|||||||+.+.++-+.+++.. ||.++ +|.+.++|..++++.+ |||||+|+.||+.+|++|+..++ ...++-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 68999999999999999999974 88877 8899999999998765 89999999999999999999886 56788999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|+..|.+.+.+++++||.|||.|||..+.|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877654
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.78 E-value=7.7e-18 Score=144.51 Aligned_cols=110 Identities=36% Similarity=0.610 Sum_probs=104.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEe
Q 009824 26 VLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLS 103 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlT 103 (524)
||||||++..++.++.+|+..|| +|..+.++.++++.+.... ||+||+|+.||+++|+++++.|+ ..+.+|||++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 8999999999999998765 99999999999999999999996 45799999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQ 137 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~ 137 (524)
...+.....+++++|+++||.||++.++|..+++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998874
No 9
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.78 E-value=2.2e-17 Score=161.22 Aligned_cols=123 Identities=25% Similarity=0.413 Sum_probs=110.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRE-CQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMD 96 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~-~gy~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~d 96 (524)
+|..++||||||++.++..++.+|+. .++. |..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .++
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~ 78 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYP 78 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 46679999999999999999999986 4786 558999999999997654 999999999999999999999864 567
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|||++|+..+.....++++.||.+||.||++.++|..+++++..+..
T Consensus 79 ~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred CCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998876544
No 10
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.77 E-value=8.4e-18 Score=162.50 Aligned_cols=121 Identities=19% Similarity=0.284 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHh-cCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY-E-VTVTNRAITALKMLRENRNNFDLVISDVYMPD---MDGFKLLELVG-LEMD 96 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy-~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd---mdGleLLe~Lr-~~~d 96 (524)
+++||||||++..+..++.+|+..++ . +..+.++.++++.+... .||+||+|+.||+ ++|+++++.++ ..+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhC--CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 48999999999999999999987654 4 55789999999988764 4999999999999 59999999885 4678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
+|||++|...+.....++++.||++|+.||++.++|..+++.+..+...
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~ 129 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKF 129 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCee
Confidence 9999999999999999999999999999999999999999999876543
No 11
>PRK09483 response regulator; Provisional
Probab=99.75 E-value=6.4e-17 Score=153.82 Aligned_cols=121 Identities=24% Similarity=0.335 Sum_probs=109.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPV 99 (524)
+++||||||++..+..++.+|+.. ++.++ .+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~i 78 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYTPDVKI 78 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeE
Confidence 378999999999999999999874 88876 789999999988765 499999999999999999999885 5678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
|++|...+.....+++..||++|+.||++.++|..+++.++++...
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~ 124 (217)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRY 124 (217)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999999999999999999876543
No 12
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.73 E-value=7.3e-17 Score=152.01 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIv 101 (524)
|+|+||||++..+..+...|+..|+++. .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999998899987 689999999988754 4999999999999999999998864 56789999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998764
No 13
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.71 E-value=4.8e-16 Score=136.60 Aligned_cols=119 Identities=36% Similarity=0.614 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-CCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAI-TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~-eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~diPV 99 (524)
...+||+|||++..+..++.+|...|+.|..+.++. +|++.++... .||+|++|+.||++||+++++.++.. +.+||
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 358899999999999999999999999999999995 9999998641 39999999999999999999999765 77899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHH-HHHHHHHHHH
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEE-LKNTWQHVIR 141 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~ee-L~~aI~~vlr 141 (524)
|++|++.......++++.|+.+|+.||+...+ |..++.+.+.
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 99999999887788899999999999977666 7777775554
No 14
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.69 E-value=3.9e-16 Score=152.45 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=92.3
Q ss_pred HHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEE---EeCCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCH
Q 009824 36 LKILEKFLRE---CQYEVTVTNRAITALKMLRENRNNFDLVI---SDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 36 ~~~L~~~L~~---~gy~V~~a~sg~eALe~L~e~~~~pDLVI---lDi~MPdmdGleLLe~Lr-~~~diPVIvlTa~~d~ 108 (524)
+..++.+|+. .+|.|..+.+++++++.+... .||+|| +|+.||+++|+++++.++ ..+++|||++|++.+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 5678888865 356667899999999988654 489998 688899999999999884 6789999999999888
Q ss_pred HHHHHHH-hcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 109 KLVMKGI-NHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 109 ~~~~~al-~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
....+++ ++||.+||.||++.++|..+|+.++++...
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~ 118 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQ 118 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcc
Confidence 7676666 799999999999999999999999987654
No 15
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.68 E-value=3.4e-15 Score=147.01 Aligned_cols=119 Identities=20% Similarity=0.422 Sum_probs=105.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
++||||||++.++..++.+|+. .++.++ .+.++.++++.+......||+||+|+.||+++|+++++.++ ..+++|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 6899999999999999999986 477755 77899999998863223599999999999999999999885 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|+..+.....++++.||.+|+.||++.++|..++..++.+
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~ 123 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876543
No 16
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.68 E-value=1.3e-15 Score=145.83 Aligned_cols=118 Identities=29% Similarity=0.390 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
++||||||++..+..+...|+..||++..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999887654 49999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.+...++++.||++|+.||++.++|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999888764
No 17
>PLN03029 type-a response regulator protein; Provisional
Probab=99.68 E-value=9e-16 Score=150.90 Aligned_cols=121 Identities=32% Similarity=0.568 Sum_probs=108.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC------------------CCceEEEEeCCCCCCCH
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENR------------------NNFDLVISDVYMPDMDG 84 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~------------------~~pDLVIlDi~MPdmdG 84 (524)
.++||||||++..+..+..+|+..||+|.++.++.++++.+.... ..+||||+|+.||+++|
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 489999999999999999999999999999999999999986432 13689999999999999
Q ss_pred HHHHHHHhcC---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 85 FKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 85 leLLe~Lr~~---~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+++++.++.. .++|||++|+..+.....++++.||++||.||+...+|...+.++++.+
T Consensus 88 ~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 88 YDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 9999999643 5799999999999999999999999999999999999988888776643
No 18
>PRK11173 two-component response regulator; Provisional
Probab=99.67 E-value=2.1e-15 Score=146.51 Aligned_cols=118 Identities=23% Similarity=0.396 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..+...|+..||+|..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999998765 49999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+......+++.||++|+.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988764
No 19
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.66 E-value=2.6e-15 Score=143.84 Aligned_cols=118 Identities=31% Similarity=0.432 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
|+||+|||++..+..+...|+..||+|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+++|||++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999988764 4999999999999999999998864 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988763
No 20
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.66 E-value=3.9e-15 Score=139.34 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLREC-QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
++||||||++..+..++..|+.. ++.+ ..+.++.++++.+... .||+||+|+.||+++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 68999999999999999999753 6664 5789999999998754 499999999999999999999885 3689999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|...+.+...++++.||++|+.||++.++|..+++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998763
No 21
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.66 E-value=2.9e-15 Score=140.89 Aligned_cols=119 Identities=21% Similarity=0.327 Sum_probs=107.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPV 99 (524)
..+||||||++..+..++..|+.. ++.++ .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 478999999999999999999876 68876 688999999988754 4999999999999999999998864 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+.....++++.|+++|+.||++.++|..+++.++.+.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999988764
No 22
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.65 E-value=3.6e-15 Score=142.46 Aligned_cols=118 Identities=20% Similarity=0.409 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
++||+|||++..+..+...|+..||+|..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|||+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988754 49999999999999999999999777789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.....++++.||+||+.||++.++|..++..++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999988764
No 23
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.65 E-value=4.4e-15 Score=142.68 Aligned_cols=117 Identities=27% Similarity=0.577 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
|+||||||++..+..+...|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+++|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999987654 4999999999999999999998864 478999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|+..+.+...++++.||++|+.||++.++|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998875
No 24
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.65 E-value=5.2e-15 Score=140.41 Aligned_cols=118 Identities=34% Similarity=0.513 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
|+||||||++..+..+...|+..|+.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999999999999999999999988764 499999999999999999999886 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.....++++.||.+|+.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888754
No 25
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.65 E-value=2e-15 Score=160.93 Aligned_cols=122 Identities=34% Similarity=0.520 Sum_probs=113.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
...+||||||+...++.++.+|...||+|+.+.++.+|+..+.+. .||+||+|+.||++||++++.+++. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 468999999999999999999999999999999999999999876 4999999999999999999998863 45799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
||++++.++.....+|++.|+.|||.||+...+|..+++..+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999988887653
No 26
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.64 E-value=7e-15 Score=142.91 Aligned_cols=118 Identities=24% Similarity=0.397 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..+...|+..||++..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999999999999999999999999999999998764 49999999999999999999999766678999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.....++++.||++|+.||++..+|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999888999999999999999999999999999888764
No 27
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.63 E-value=8.6e-15 Score=139.52 Aligned_cols=118 Identities=26% Similarity=0.517 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
|+||||||++..+..+...|+..|+.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988654 49999999999999999999999766789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.+...++++.||++|+.||++.++|..+++.++++.
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999887653
No 28
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=9.4e-15 Score=138.61 Aligned_cols=118 Identities=27% Similarity=0.382 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
|+||||||++..+..+...|+..+|++..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999998899999999999999988654 4999999999999999999998864 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.....+++++||++|+.||++.++|..+++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887753
No 29
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.63 E-value=9.1e-15 Score=140.18 Aligned_cols=118 Identities=31% Similarity=0.494 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..+...|+..||.|..+.++.++++.+.. .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999889999999999999998752 49999999999999999999988755459999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+..+.....++++.||++|+.||++.++|..+++.++++..
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 119 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999887643
No 30
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.63 E-value=1e-14 Score=140.31 Aligned_cols=117 Identities=28% Similarity=0.444 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPVI 100 (524)
++||||||++..+..+...|+..||++..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 6799999999999999999998899999999999999988754 49999999999999999999988643 679999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|+..+.....+++++||++|+.||++.++|..+++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998876
No 31
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.63 E-value=1.1e-14 Score=138.37 Aligned_cols=118 Identities=27% Similarity=0.470 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diPVI 100 (524)
++||||||++..+..+...|+..+++|..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 6899999999999999999998899999999999999988765 4999999999999999999998864 3579999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
++|+..+.....++++.||++|+.||++.++|..++..++++.
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999988764
No 32
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.63 E-value=1.2e-14 Score=140.17 Aligned_cols=119 Identities=38% Similarity=0.589 Sum_probs=110.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
.++||||||++..+..+...|+..+|.|..+.++.+++..+... .||+||+|+.||+++|+++++.++..+++|||++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 47999999999999999999998899999899999999988754 4999999999999999999999976678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999888764
No 33
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.62 E-value=1.2e-14 Score=142.08 Aligned_cols=117 Identities=21% Similarity=0.404 Sum_probs=107.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEec
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA 104 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa 104 (524)
+||||||++..+..+...|+..+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|+|++|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 799999999999999999999999999999999999988754 499999999999999999999997667899999998
Q ss_pred C-CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 105 Y-SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 105 ~-~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
. .+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 46677889999999999999999999999999988764
No 34
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.62 E-value=1.6e-14 Score=133.69 Aligned_cols=119 Identities=29% Similarity=0.423 Sum_probs=108.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.+.+||||||++..+..+...|+..+|.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 457899999999999999999998899999999999999888654 499999999999999999999885 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|...+......+++.|+.+|+.||+..+++..++..++..
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765
No 35
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=4.6e-15 Score=136.28 Aligned_cols=112 Identities=24% Similarity=0.445 Sum_probs=105.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEe
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLS 103 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlT 103 (524)
..||||||..++..|...+++-||.|+++.+.++++..++... |.-.++|+.|.+.+|+++++.|+ ...+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999998765 99999999999999999999886 56899999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHH
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~ 138 (524)
++.+...+.+|++.||++||.||-+.++++.++..
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999999887764
No 36
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.61 E-value=1.8e-14 Score=139.76 Aligned_cols=119 Identities=29% Similarity=0.494 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIv 101 (524)
..+||||||++..+..++..|+..||++..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+++|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988754 4999999999999999999998864 46899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+++..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999988764
No 37
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.61 E-value=1.9e-14 Score=137.16 Aligned_cols=118 Identities=34% Similarity=0.470 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
++||||||++..+..+...|+..+|+|..+.++.+++..+... .||+||+|+.||+.+|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 6899999999999999999998999999999999999988654 4999999999999999999998864 478999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999999999999999999999999999999999887764
No 38
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.61 E-value=2.4e-14 Score=137.27 Aligned_cols=117 Identities=26% Similarity=0.376 Sum_probs=107.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhc-CCCCcEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGL-EMDLPVVM 101 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~Lr~-~~diPVIv 101 (524)
+||||||++..+..+...|+..||+|..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++. .+.+|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999989999999999999999887654 999999999998 589999998864 46899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+......++++||++|+.||++.++|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764
No 39
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.61 E-value=7.4e-15 Score=144.30 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=97.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH-HHHh-cCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL-ELVG-LEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL-e~Lr-~~~diPVI 100 (524)
.+|++|||+|..+..|+.+|+. ++.|. .+.++.++++.+. .|||||+|+.||+++|++++ +.++ ..+.++||
T Consensus 11 ~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred ceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 4699999999999999999984 55544 6788999988642 38999999999999999997 5565 56789999
Q ss_pred EEecCCCHHHHHHHHh--cCCcEEEeCCCCHHHHHHHHHHHHHhccCCC
Q 009824 101 MLSAYSDTKLVMKGIN--HGACDYLLKPVRMEELKNTWQHVIRRKKVDP 147 (524)
Q Consensus 101 vlTa~~d~~~~~~al~--~GA~dYL~KP~~~eeL~~aI~~vlr~~~~~~ 147 (524)
++|+..+ ....++. .||.+|+.|+.+.++|..+|+.+.++....+
T Consensus 86 vlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~ 132 (216)
T PRK10100 86 LLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFT 132 (216)
T ss_pred EEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccC
Confidence 9999987 3445555 5999999999999999999999998765543
No 40
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.60 E-value=2.4e-15 Score=150.85 Aligned_cols=115 Identities=30% Similarity=0.494 Sum_probs=103.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
++|+|||||......|..+|.+.+..|..|....+|++.|...+ |||||+|+.||+|+|++++++++ ..+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 58999999999999999999999977889999999999998765 99999999999999999999886 4678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|++.+ .....+...+.|||.||+..+.|-++|.+..++
T Consensus 79 ssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 79 SSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred ecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 99975 556667777899999999999999999988743
No 41
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.59 E-value=1.5e-14 Score=166.96 Aligned_cols=120 Identities=29% Similarity=0.429 Sum_probs=110.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-----C
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-----M 95 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-----~ 95 (524)
|.+++||||||++..+..++.+|+..||+|.++.++.+|++.+.+. .||+||+|+.||++||+++++.++.. +
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~ 765 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDP 765 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCC
Confidence 3468999999999999999999999999999999999999998765 49999999999999999999988642 6
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.+|||++|+..+.....++++.|+++||.||++.++|..++..+++.
T Consensus 766 ~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 766 DCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999887653
No 42
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.59 E-value=3e-14 Score=138.84 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHHHHh-cCCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDVY--MPDMDGFKLLELVG-LEMDL 97 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~--MPdmdGleLLe~Lr-~~~di 97 (524)
|.|+||||++.++..++.+|+..++ +++ .+.++.++++.+... .|||||+|+. ||+++|+++++.++ ..+++
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4689999999999999999986543 443 789999999988654 4999999966 88889999999885 57889
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcE-EEeCCCCHHHHHHHHHHHHHhccC
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACD-YLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~d-YL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
+||++|++.+..... ++..|+.. |+.|+.+.++|..+++.+..+...
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~ 126 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETT 126 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcc
Confidence 999999998876653 55555554 899999999999999999877543
No 43
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.58 E-value=2.6e-14 Score=166.86 Aligned_cols=120 Identities=30% Similarity=0.471 Sum_probs=111.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVI 100 (524)
.+++||||||++.++..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+|+|+++++.++. .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4579999999999999999999999999999999999999998654 999999999999999999999864 5689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
++|+....+...+++++|+++||.||++.++|..++..+.++.
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876643
No 44
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-14 Score=166.19 Aligned_cols=123 Identities=28% Similarity=0.453 Sum_probs=112.2
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC--
Q 009824 17 IDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-- 94 (524)
Q Consensus 17 ~~~~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-- 94 (524)
.+.+..+.+||||||++..+++...+|+..|.+|+++.++.||++++.. ...||+||+|++||.|||++..+.||..
T Consensus 660 ~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~ 738 (786)
T KOG0519|consen 660 DSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER 738 (786)
T ss_pred ccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc
Confidence 3556668999999999999999999999999999999999999999972 3469999999999999999999999644
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
..+|||.+|++.+.....+|++.|.++||.|||..+.|..+++..+
T Consensus 739 ~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 739 WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999888765
No 45
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.58 E-value=5.4e-14 Score=130.72 Aligned_cols=119 Identities=21% Similarity=0.364 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPV 99 (524)
.++||||||++..+..+...|... ++.++ .+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 478999999999999999999865 56655 788999999887654 499999999999999999998885 3578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+......+++.|+.+|+.||+...+|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999887653
No 46
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.58 E-value=2.5e-14 Score=164.98 Aligned_cols=119 Identities=27% Similarity=0.434 Sum_probs=110.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
..++||||||++..+..++.+|+..|+.|..+.++.+|++.+.+. .||+||+|+.||++||+++++.++. .+++|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 358999999999999999999999999999999999999999765 4999999999999999999999974 45799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|+..+.+...++++.|+++||.||++.++|..++.+++..
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999887654
No 47
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.57 E-value=8.4e-14 Score=131.74 Aligned_cols=117 Identities=32% Similarity=0.560 Sum_probs=107.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa 104 (524)
||||||++..+..+...|+..+|.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+++|||++|+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 58999999999999999998999999999999999988754 499999999999999999999886 457899999999
Q ss_pred CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 105 YSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
..+.....++++.||++|+.||++.++|..+++.++++..
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998877643
No 48
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.56 E-value=1.2e-13 Score=130.08 Aligned_cols=119 Identities=20% Similarity=0.334 Sum_probs=106.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPV 99 (524)
..+||||||++..+..+...|+.. ++.++ .+.++.+++..+... .||+||+|+.||+++|+++++.++ ..+.+|+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~v 83 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGRI 83 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 378999999999999999999764 66654 688999999988764 499999999999999999999885 4578899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+++...+......+++.|+.+|+.||++.++|...++.++++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999988754
No 49
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.56 E-value=4.5e-13 Score=127.04 Aligned_cols=119 Identities=34% Similarity=0.535 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
|+|++|||++..+..++..|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+++|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999999999998899998999999999887654 499999999999999999999885 4568999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|...+.....++++.||++|+.||+..++|..+++.++++..
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~ 120 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999998877543
No 50
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.55 E-value=1.1e-13 Score=134.68 Aligned_cols=116 Identities=28% Similarity=0.441 Sum_probs=99.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQ-YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~g-y~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
+++|+||||++..+..++.+|+..+ +.+ ..+.++.++++.+... .||+||+|+.||+++|+++++.++.....+||
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii 78 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIV 78 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEE
Confidence 3799999999999999999998876 344 4688999999988764 49999999999999999999988644445688
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|++. +.+.++++.||.+||.||+..++|..++.++.+.
T Consensus 79 ~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 79 FVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888875 4678899999999999999999999999988654
No 51
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.55 E-value=5.9e-14 Score=162.44 Aligned_cols=121 Identities=22% Similarity=0.298 Sum_probs=110.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.+.+||||||++.++..++.+|+..||+|..+.++.+|++.+... ..||+||+|+.||++||+++++.++ ..+.+|||
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii 758 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLI 758 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 357999999999999999999999999999999999999988643 3589999999999999999999886 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
++|++.......++++.|+++||.||++.++|..++.++++..
T Consensus 759 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 759 GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999988654
No 52
>PRK14084 two-component response regulator; Provisional
Probab=99.55 E-value=1.3e-13 Score=135.40 Aligned_cols=115 Identities=23% Similarity=0.391 Sum_probs=100.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQ-Y-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~g-y-~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVI 100 (524)
|+|+||||++..+..++.+|+..+ + .+..+.++.++++.+.+. .||+||+|+.||+++|+++++.++. .+..+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998764 4 456889999999998764 4999999999999999999998864 4567788
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|++.+ ...++++.||.+||.||+..++|..+++++.+.
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 8888754 567899999999999999999999999988754
No 53
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.55 E-value=1.3e-13 Score=137.04 Aligned_cols=118 Identities=29% Similarity=0.530 Sum_probs=105.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-C--CC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-M--DL 97 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~--di 97 (524)
+++||||||++..+..+...|+.. ++.++ .+.++.++++.+.... ||+||+|+.||++||+++++.++.. . .+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 56665 7899999999988654 9999999999999999999988642 3 38
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|||++|+..+.....++++.|+++|+.||++.++|..+++.++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988754
No 54
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.54 E-value=1.2e-13 Score=148.26 Aligned_cols=121 Identities=29% Similarity=0.516 Sum_probs=110.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCc
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diP 98 (524)
|+...+||||||++..+..+...|+..||+|..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|
T Consensus 1 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~~~~p 78 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTP 78 (457)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 34567899999999999999999999999999999999999998765 499999999999999999999885 457899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|+..+.+...++++.||.+|+.||++.++|...++.++..
T Consensus 79 vI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 79 VILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999988877653
No 55
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.54 E-value=8.7e-14 Score=148.58 Aligned_cols=119 Identities=35% Similarity=0.631 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
..++||||||++..+..++..|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+++|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 358999999999999999999999999999999999999988754 499999999999999999999885 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|++.+.+...++++.||.+|+.||++.++|..+++.++.+
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.53 E-value=3.8e-14 Score=149.43 Aligned_cols=118 Identities=29% Similarity=0.448 Sum_probs=105.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
...+||||||++..+..+..+|.. .+.+..+.++.+|+..+.+. .||+||+|+.||+++|+++++.++. .+++|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 357899999999999999999965 57777899999999987654 4999999999999999999999963 37899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|++.+.+.+.++++.||+|||.||++.++|...+....+.
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776553
No 57
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.53 E-value=3.1e-13 Score=126.80 Aligned_cols=119 Identities=22% Similarity=0.291 Sum_probs=105.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPV 99 (524)
.++||||||++..+..+...|+. .++.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++ ..+.+|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 37899999999999999999975 578876 688999999987654 499999999999999999999886 4467899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+++...+......+++.|+++|+.||++.++|..+++.++.+.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 127 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGS 127 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999887653
No 58
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.53 E-value=3.9e-13 Score=129.54 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..+...|+..++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999999999999999999999999999999988754 49999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
...+......+++.||.+|+.||++.++|..+++.++++.
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9999988999999999999999999999999999887754
No 59
>PRK15115 response regulator GlrR; Provisional
Probab=99.52 E-value=1.4e-13 Score=147.57 Aligned_cols=118 Identities=30% Similarity=0.480 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
..+||||||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 37899999999999999999999999999999999999998754 499999999999999999999885 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+|+..+.....++++.||.+|+.||+..++|..+++.+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 60
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.52 E-value=2.3e-13 Score=146.95 Aligned_cols=117 Identities=31% Similarity=0.435 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
.+||||||++..+..++..|+..||.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 68999999999999999999999999999999999999997654 99999999999999999999885 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|++.+.+....+++.||.+|+.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887764
No 61
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.51 E-value=1.8e-13 Score=159.20 Aligned_cols=118 Identities=26% Similarity=0.360 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-CC---Cc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MD---LP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~d---iP 98 (524)
+.+||||||++..+..++.+|+..||+|.++.++.+|++.+... .||+||+|+.||+++|+++++.++.. +. +|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 45899999999999999999999999999999999999999764 49999999999999999999999743 33 89
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|++.+.....++++.|+++||.||++.++|..++..++..
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 62
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.50 E-value=3.1e-13 Score=140.39 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=99.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLR-ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~-~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
|+||||||++..+..++.+|+ ..+++++ .+.++.++++.+.+. .||+|++|+.||+|+|+++++.++....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5688887 789999999998765 499999999999999999999997666799999
Q ss_pred EecCCC--HHHHHHHHhcCCcEEEeCCC---------CHHHHHHHHHHHHH
Q 009824 102 LSAYSD--TKLVMKGINHGACDYLLKPV---------RMEELKNTWQHVIR 141 (524)
Q Consensus 102 lTa~~d--~~~~~~al~~GA~dYL~KP~---------~~eeL~~aI~~vlr 141 (524)
+++..+ .....++++.|+.+|+.||+ ..++|...++.+.+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 998754 56677899999999999999 45666666666554
No 63
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.50 E-value=2.6e-13 Score=161.62 Aligned_cols=121 Identities=29% Similarity=0.469 Sum_probs=111.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCc
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diP 98 (524)
++..++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|
T Consensus 955 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~p 1032 (1197)
T PRK09959 955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLP 1032 (1197)
T ss_pred cccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 44568999999999999999999999999999999999999998764 499999999999999999999886 457899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|+..+.....++++.|+++||.||++.++|..+++.+...
T Consensus 1033 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1033 IWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999877653
No 64
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.50 E-value=3.1e-13 Score=144.96 Aligned_cols=113 Identities=25% Similarity=0.380 Sum_probs=103.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHh-cCCCCcE
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLLe~Lr-~~~diPV 99 (524)
||||||++..+..+...| .+|+|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.++ ..+++||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 689999999999999999865 4999999999996 89999999885 5678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|++|+..+.+...++++.||+|||.||++.++|..+++.++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999887654
No 65
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.49 E-value=3.4e-13 Score=154.05 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=104.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CC-Cc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MD-LP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~d-iP 98 (524)
+++||||||++.++..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||++||+++++.++.. +. .|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 58999999999999999999999999999999999999998754 49999999999999999999999643 34 48
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|+.... ...++++.|+++||.||++.++|..++++++..
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 9999988764 467889999999999999999999999988754
No 66
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.48 E-value=5.3e-13 Score=143.71 Aligned_cols=115 Identities=34% Similarity=0.512 Sum_probs=106.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa 104 (524)
||||||++..+..+...|+..||+|..+.++.+|+..+... .||+||+|+.||+++|+++++.++ ..+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988754 499999999999999999999885 457899999999
Q ss_pred CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 105 YSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+.+.....++++.|+.+|+.||+..++|..+++.++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887664
No 67
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.47 E-value=4.1e-13 Score=128.26 Aligned_cols=120 Identities=28% Similarity=0.380 Sum_probs=105.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
..+||++||++..+..+...|...||.++ ++.++.++.+...... ||+||+|+.||..|-.+-+.+....+..|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 37899999999999999999999999877 7788888888877655 99999999999999544445556677889999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+++++..+..+++.||.+||+||++...|+.++.-+..+..
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~ 125 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFE 125 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877653
No 68
>PRK13435 response regulator; Provisional
Probab=99.46 E-value=1.7e-12 Score=117.04 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=101.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLLe~Lr~~~diPVI 100 (524)
.++|||+|+++.....+...|+..||.++ .+.++.++++.+.+. .||+||+|+.|+ +.+|+++++.++..+.+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 58999999999999999999998899987 788999999988654 499999999998 58999999988766789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+++...+. ..++..|+.+|+.||++.++|..++++++.+..
T Consensus 83 ~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 83 FMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 99986542 467789999999999999999999998876543
No 69
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.45 E-value=5.3e-12 Score=106.51 Aligned_cols=118 Identities=30% Similarity=0.554 Sum_probs=105.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diP 98 (524)
.++|+++|+++.....++..|+..+++ +..+.++.+++..+... .+|++++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988885 66788999999987654 49999999999999999999988643 5689
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+|+++...+.....++++.|+.+|+.||++.+++...++.++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999887764
No 70
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.44 E-value=3e-12 Score=135.00 Aligned_cols=117 Identities=31% Similarity=0.482 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPVI 100 (524)
.+||||||++..+..+...|...+|+|..+.++.++++.+... .||+||+|+.||+.+|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 4799999999999999999998899999999999999998764 49999999999999999999999653 478999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|+..+.....++++.||++|+.||++.++|..++..+++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764
No 71
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.43 E-value=1.3e-12 Score=146.69 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
+.++||||||++..+..+..+|...+|.|..+.++.++++.+... .|||||+|+.||+++|+++++.++ ..+++|||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI 83 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTTAVPPVV 83 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEE
Confidence 458999999999999999999988899999999999999988754 499999999999999999999996 46789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCH--HHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRM--EELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~--eeL~~aI~~vlr~ 142 (524)
++|+..+.....++++.||.+|+.||... ..+..+++.++..
T Consensus 84 ~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 84 VVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999754 3666666666544
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.42 E-value=3.7e-12 Score=133.10 Aligned_cols=104 Identities=29% Similarity=0.462 Sum_probs=91.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
+++||||||++..+..++.+|+.. +++++ .+.++.++++.+.... ||+|++|+.||+++|+++++.++....+|||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999875 88887 8899999999887654 9999999999999999999988654449999
Q ss_pred EEecCC--CHHHHHHHHhcCCcEEEeCCCC
Q 009824 101 MLSAYS--DTKLVMKGINHGACDYLLKPVR 128 (524)
Q Consensus 101 vlTa~~--d~~~~~~al~~GA~dYL~KP~~ 128 (524)
++|+.. +.....++++.||++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999764 3466788999999999999994
No 73
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.40 E-value=2.3e-12 Score=134.10 Aligned_cols=104 Identities=29% Similarity=0.471 Sum_probs=92.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQ-YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~g-y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
+||||||||.+..|..|+++|...+ .+|+ ++.++.+|++.+.+.. ||+|.+|+.||.|||+++++.+-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 4899999999999999999999877 5555 8899999999998765 9999999999999999999988666899999
Q ss_pred EEecCCC--HHHHHHHHhcCCcEEEeCCCC
Q 009824 101 MLSAYSD--TKLVMKGINHGACDYLLKPVR 128 (524)
Q Consensus 101 vlTa~~d--~~~~~~al~~GA~dYL~KP~~ 128 (524)
|+++... .+...+++++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9987544 567889999999999999974
No 74
>PRK09191 two-component response regulator; Provisional
Probab=99.31 E-value=4.3e-11 Score=118.15 Aligned_cols=116 Identities=19% Similarity=0.348 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr~~~diPVI 100 (524)
..+||||||++..+..++..|+..|+.++ .+.++.++++.+.+. .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35799999999999999999998899987 688999999998764 4999999999995 8999999988643489999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|+..+.... +...|+.+|+.||++.++|..+++.++..
T Consensus 215 ~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 99998765433 34567899999999999999999887654
No 75
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.29 E-value=5.2e-11 Score=137.68 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=107.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
+.+||||||++..+..++..|+..||+|+.+.++.++++.+.+....||+||+ .||+++|+++++.++ ..+.+|||+
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIv 774 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIIL 774 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 56899999999999999999999999999999999999998765445899999 799999999999885 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.....++++.| ++||.||++..+|..+++++++..
T Consensus 775 ls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 775 GGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99999999999999999 999999999999999999988754
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.23 E-value=2.1e-10 Score=91.98 Aligned_cols=111 Identities=35% Similarity=0.558 Sum_probs=98.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecC
Q 009824 27 LAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAY 105 (524)
Q Consensus 27 LIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~ 105 (524)
+++|+++..+..+...|+..|+.+..+.+..+++..+... .+|++|+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 4789999999999999998899998899999999988754 4999999999999999999988854 567899999988
Q ss_pred CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 106 SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 106 ~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
.+.....++++.|+.+|+.||+..++|..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8888888999999999999999999998887653
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.17 E-value=4e-10 Score=121.52 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=107.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhc-CCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGL-EMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr~-~~diPVI 100 (524)
+.+||||||++..+..+..+|+..+|.+..+.++.++++.+... ..||+||+|..||+ ++|+++++.++. .+.+|||
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 56899999999999999999999999999999999999988643 24999999999997 999999998864 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+++...+......++..|+.+|+.||++.++|..+++.++..
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 999999988888999999999999999999999999887654
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.13 E-value=3.9e-10 Score=116.00 Aligned_cols=89 Identities=28% Similarity=0.443 Sum_probs=79.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC-CH
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV-RM 129 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~-~~ 129 (524)
.+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+.+.++++.||+||+.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 467899999998764 4999999999999999999998864 4689999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHh
Q 009824 130 EELKNTWQHVIRR 142 (524)
Q Consensus 130 eeL~~aI~~vlr~ 142 (524)
++|..++..+++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988887754
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.08 E-value=8.3e-10 Score=125.71 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=92.7
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH----HHHHHH
Q 009824 24 MRVLAVDDDQT--------CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF----KLLELV 91 (524)
Q Consensus 24 irVLIVDDdp~--------~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl----eLLe~L 91 (524)
||||||||+.. .++.|+..|+..||+|..+.++.+|++.+... ..||+||+|++||+++|+ ++++++
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999752 259999999999999997 899888
Q ss_pred hc-CCCCcEEEEecCCC--HHHHHHHHhcCCcEEEeCCCCHHHH-HHHHHHHHHhc
Q 009824 92 GL-EMDLPVVMLSAYSD--TKLVMKGINHGACDYLLKPVRMEEL-KNTWQHVIRRK 143 (524)
Q Consensus 92 r~-~~diPVIvlTa~~d--~~~~~~al~~GA~dYL~KP~~~eeL-~~aI~~vlr~~ 143 (524)
+. .+++|||++|+..+ .......++ -+.+|+-+--+..++ ...+....+++
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y 134 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHH
Confidence 74 56899999999986 443333333 367788887554444 33455554433
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.01 E-value=1.5e-09 Score=108.76 Aligned_cols=116 Identities=29% Similarity=0.445 Sum_probs=99.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPV 99 (524)
.++|+++||++..+..|..++.. ..+++. .+.++.++++.+... .+|++++|+.||+++|+++...++. .+..+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAI 78 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeE
Confidence 37899999999999999999984 234443 678899999998865 5999999999999999999999975 567789
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|++|++.+ .+..+++..|.||+.||+..+.|...+....+.
T Consensus 79 vfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 79 VFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 99999875 667777899999999999999999999876554
No 81
>PLN03162 golden-2 like transcription factor; Provisional
Probab=98.85 E-value=2.7e-09 Score=109.55 Aligned_cols=60 Identities=47% Similarity=0.815 Sum_probs=53.0
Q ss_pred cccCCCCceEeeHHHHHHHHHHHHHcCCCCCchHHHHhhcCCCCCCHHhH-----Hhhhhhcccc
Q 009824 186 STTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENV-----KFRLSLKRLG 245 (524)
Q Consensus 186 ~s~~kk~rvvw~veLh~kflaavn~LGl~~avPk~IL~lmk~~~LT~eev-----k~rL~mKr~t 245 (524)
..+.||+|+.|+.+||++|+.+|++||.++++||.||++|++.+||+++| |||+++|+..
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~ 294 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA 294 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence 45688999999999999999999999999999999999999999999999 5555555433
No 82
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=98.83 E-value=2.3e-09 Score=112.51 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=65.1
Q ss_pred ceEeeHHHHHHHHHHHHHcCCCC------------------CchHHHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHH
Q 009824 193 RVVWTTELHTKFIGAVNLLGLDK------------------AVPKKILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMV 254 (524)
Q Consensus 193 rvvw~veLh~kflaavn~LGl~~------------------avPk~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~ 254 (524)
.|.++++.+..+++.- +|+++ ++|+.|| .|+++||.+| |++ ||.|+. .++
T Consensus 151 ~Hs~~va~~a~~ia~~--lgl~~~~i~~l~~aalLHDIGKi~ip~~IL--~K~g~Lt~eE--~~~-ik~H~~-----~g~ 218 (344)
T COG2206 151 GHSVRVAELAEAIAKK--LGLSEEKIEELALAGLLHDIGKIGIPDSIL--NKPGKLTEEE--FEI-IKKHPI-----YGY 218 (344)
T ss_pred HHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhcccccCCHHHh--CCCCCCCHHH--HHH-HHhchH-----HHH
Confidence 5566677777776655 88775 9999999 9999999999 888 999998 777
Q ss_pred HhhcCCCchhhhhhhhhccCCCcccCCCCc
Q 009824 255 ASVGSKDSSYLRIGALDGFGGSHSVNSPGR 284 (524)
Q Consensus 255 ~~L~~sd~~ll~~aa~igl~hhe~~dGsGy 284 (524)
.+|..-. .+...+..+++.|||||||+||
T Consensus 219 ~iL~~~~-~~~~~~~~~~l~HHEr~DGtGY 247 (344)
T COG2206 219 DILKDLP-EFLESVRAVALRHHERWDGTGY 247 (344)
T ss_pred HHHHhcc-cccHHHHHHHHHhhhccCCCCC
Confidence 7776543 4666677889999999999999
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.30 E-value=7.3e-06 Score=95.11 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=95.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-HHhc--CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LVGL--EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe-~Lr~--~~diP 98 (524)
.+.+|+|+||++..+..+..+|+..||.|..+.+..+ +.. ..||++|+|+.||++++...+. .++. ....+
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDF 608 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCc
Confidence 4689999999999999999999999999998888777 232 3599999999999988776554 3332 23457
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
+|+++...+......+.+.|+.+|+.||+...++..++....
T Consensus 609 ~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 609 LILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred EEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 888899888889999999999999999999999998887654
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.19 E-value=1.5e-06 Score=93.55 Aligned_cols=94 Identities=34% Similarity=0.500 Sum_probs=83.3
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 47 QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 47 gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
-|+|.++..+.+++..+...+ +|.+++|++||+|+|+++++.++..+.. ++++|...+.....+++++|+.++|.||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 356777899999999987654 9999999999999999999999877655 9999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 009824 127 VRMEELKNTWQHVIRRK 143 (524)
Q Consensus 127 ~~~eeL~~aI~~vlr~~ 143 (524)
+....+......+.+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99999988888776543
No 85
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.12 E-value=4.2e-06 Score=65.74 Aligned_cols=51 Identities=57% Similarity=0.900 Sum_probs=46.2
Q ss_pred CCceEeeHHHHHHHHHHHHHcCC-CCCchHHHHhhcCCCCCCHHhHHhhhhh
Q 009824 191 KPRVVWTTELHTKFIGAVNLLGL-DKAVPKKILDLMNVEGLTRENVKFRLSL 241 (524)
Q Consensus 191 k~rvvw~veLh~kflaavn~LGl-~~avPk~IL~lmk~~~LT~eevk~rL~m 241 (524)
++|..|+.++|.+|+.+++.+|. +.++|+.|++.|.+.+||.++|+.++++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence 46889999999999999999998 8899999999999999999999766633
No 86
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=97.82 E-value=8.1e-06 Score=65.26 Aligned_cols=48 Identities=10% Similarity=-0.086 Sum_probs=29.7
Q ss_pred CCCCHHhHHhhhhhcccchhhhhhhHHHhhcCCCchhhhhhhhhccCCCcccCCCCc
Q 009824 228 EGLTRENVKFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPGR 284 (524)
Q Consensus 228 ~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~~sd~~ll~~aa~igl~hhe~~dGsGy 284 (524)
+.||.+| +++ +++|.. .+..+|..-. .+-...+.+.+.|||+|||+||
T Consensus 1 G~Lt~~e--~~~-~~~Hp~-----~~~~~l~~~~-~l~~~v~~~i~~hhEr~DGsGy 48 (64)
T PF13487_consen 1 GKLTPEE--REI-IQQHPE-----YGAELLSQIP-RLSPEVADIILQHHERWDGSGY 48 (64)
T ss_dssp -GS-HHH--HHH-HHHHHH-----HHHHHHTT-T-TS-HHHHHHHHHTT--TBS-S-
T ss_pred CCCCHHH--HHH-HHHHHH-----HHHHHHHcch-hhHHHHHHHHHHhccCCcCCCC
Confidence 4689999 778 788886 5556665432 2333567889999999999999
No 87
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.63 E-value=0.00044 Score=61.17 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=74.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEE-EEeCCCCCCCHHHHHHHH-hcCCCCcEEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLV-ISDVYMPDMDGFKLLELV-GLEMDLPVVML 102 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLV-IlDi~MPdmdGleLLe~L-r~~~diPVIvl 102 (524)
||||||||..-+..|+.+|+=.|+++..+....- ....... ..+.+ |.....+ ...++++.+ +..+.+|||++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999989999887765443 2222222 23433 3333333 445566655 67889999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
......... ..+.+-|..|+++.+|..+++++
T Consensus 76 g~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 887765111 12677799999999999998875
No 88
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.57 E-value=0.00058 Score=47.10 Aligned_cols=55 Identities=38% Similarity=0.619 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP 80 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MP 80 (524)
++|+++++++..+..+...+...++++..+.+..+++..+... .+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999998899988899999999888654 499999998664
No 89
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.62 E-value=0.054 Score=48.51 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=79.6
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhcC-
Q 009824 25 RVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGLE- 94 (524)
Q Consensus 25 rVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLLe~Lr~~- 94 (524)
||++. |.|..=...+..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..++.. .--++++.++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 777777788888999999999853 35778888887654 9999998877543 223456666543
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI 136 (524)
+....|++.+....+...+..++|+++|+..--..++...-+
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 434556676666666778888999999999888888776554
No 90
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.48 E-value=0.026 Score=50.23 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh-cCCCCcEEEEecCCCHHHHH
Q 009824 36 LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVG-LEMDLPVVMLSAYSDTKLVM 112 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~Lr-~~~diPVIvlTa~~d~~~~~ 112 (524)
...|...|++.|++|+.+.+..+++..++.. ..++.|++|+. ++ ....++++.++ ....+||.+++.....+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 4567778887899999999999999999875 47999999997 22 23456777774 67899999999876555444
Q ss_pred HHHhcCCcEEEeCCC-CHHHHHHHHHHHHHh
Q 009824 113 KGINHGACDYLLKPV-RMEELKNTWQHVIRR 142 (524)
Q Consensus 113 ~al~~GA~dYL~KP~-~~eeL~~aI~~vlr~ 142 (524)
..+-..+++|+-..- +.+.+...|..+.++
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 445556888998874 455555677777665
No 91
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.39 E-value=0.14 Score=47.08 Aligned_cols=115 Identities=17% Similarity=0.055 Sum_probs=84.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLLe~Lr~ 93 (524)
+.+||+. |.|..-..++..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|... .-.++++.++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4678888 888888899999999999999854 45788888887654 9999999888743 23456667753
Q ss_pred C-C-CCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 94 E-M-DLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 94 ~-~-diPVIvlTa~~------d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
. . +++ |++.+.. ..+...++.+.|++.+....-..+++...++..+
T Consensus 81 ~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3 554 4444433 3445677889999888888888888888777654
No 92
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.98 E-value=0.095 Score=46.27 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhcC-C-CCcEEEE
Q 009824 30 DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGLE-M-DLPVVML 102 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLLe~Lr~~-~-diPVIvl 102 (524)
|.+..=...+..+|+..||+|+.. ...++.++.+.+.+ ||+|.+-..+... +..++++.++.. + +++ |++
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~-i~v 86 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIP-VLV 86 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCe-EEE
Confidence 667777788999999999999743 35677788877654 9999998876543 456677777644 4 444 555
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeC
Q 009824 103 SAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~K 125 (524)
.+..-......+.+.|++.|+..
T Consensus 87 GG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 87 GGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred ECCCCChhHHHHHHcCCeEEECC
Confidence 55554444456778999777763
No 93
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.76 E-value=0.059 Score=63.79 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=43.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM 79 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~M 79 (524)
...+.+||||||++.++..+..+|+..|++|+.+.++. . ...||+||+|+.+
T Consensus 686 ~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------~--~~~~Dlvl~D~~~ 737 (894)
T PRK10618 686 LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------I--SQEYDIFLTDNPS 737 (894)
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------c--CCCCCEEEECCCC
Confidence 34678999999999999999999999999999887531 1 2359999999984
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.22 E-value=0.53 Score=43.09 Aligned_cols=110 Identities=10% Similarity=0.020 Sum_probs=77.1
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhc-CCCCcEEEEe
Q 009824 30 DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGL-EMDLPVVMLS 103 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLLe~Lr~-~~diPVIvlT 103 (524)
|-|..-...+..+|+..||+|+. ..+.+++++...+.. +|+|.+-..|.. +..+ ++++.++. ..+...|++-
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 55666667888899999999984 456888888887654 898888665532 2233 24455653 3333345556
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+....+...+..++|+++|+..--+..+....+...++
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 54555667778899999999988888888887776553
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.26 E-value=0.46 Score=54.87 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=73.0
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCC
Q 009824 24 MRVLAVDDDQ-TC-----LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMD 96 (524)
Q Consensus 24 irVLIVDDdp-~~-----~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~d 96 (524)
|+|+|||++- .. .+.|...|++.||+|..+.+..+++..++.. ..+++|++|+.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788888773 22 4556667788899999999999999998744 5789999995322 345777774 6689
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCC-HHHHHHHHHHHHHh
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVR-MEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~-~eeL~~aI~~vlr~ 142 (524)
+||+++........+-...-.-+.+|+..-.. .+.+...|..+.++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNE 123 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHH
Confidence 99999876543322222222234555554332 33333444444443
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=93.76 E-value=0.59 Score=54.04 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=58.8
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCC
Q 009824 24 MRVLAVDDDQ-T-----CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMD 96 (524)
Q Consensus 24 irVLIVDDdp-~-----~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~d 96 (524)
|+|+||+++. . -.+.|...|++.||+|+.+.+..+++..++.. ...++|++|+.- ...++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK---YNLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch---hhHHHHHHHHHhCCC
Confidence 5788887772 1 24566677888899999999999999988744 578999999522 2244777774 6689
Q ss_pred CcEEEEecCC
Q 009824 97 LPVVMLSAYS 106 (524)
Q Consensus 97 iPVIvlTa~~ 106 (524)
+||+++....
T Consensus 77 ~Pv~~~~~~~ 86 (714)
T PRK15400 77 LPLYAFANTY 86 (714)
T ss_pred CCEEEEcccc
Confidence 9999987654
No 97
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.46 E-value=2 Score=39.63 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=75.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcC-CCCcEEEEe
Q 009824 30 DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGLE-MDLPVVMLS 103 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLLe~Lr~~-~diPVIvlT 103 (524)
|-|..-..++..+|+..||+|+. ....++.++...+.. +|+|-+-..|-. +..+ ++.+.++.. ..-++|++-
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 33445556788899999999984 457888888887764 999998887753 3333 344566532 323456676
Q ss_pred cC---CCHH---HHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 104 AY---SDTK---LVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 104 a~---~d~~---~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+. ...+ ...++.+.|++......-..+++...+++.++
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 63 1222 24467789998888887888999888887653
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.98 E-value=1.3 Score=44.82 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=73.1
Q ss_pred cEEEEEeCCHHHHHHHHHHH------HhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHH
Q 009824 24 MRVLAVDDDQTCLKILEKFL------RECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP---------DMDGFK 86 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L------~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP---------dmdGle 86 (524)
+|+=|+.|+.....-+.+.+ -+.|+.|. ++.+...|-++.. - .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~-~--G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED-A--GCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 56666666543333222222 23499887 4456666655543 2 37877 77 111157
Q ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 009824 87 LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 87 LLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~ 142 (524)
+++.++...++|||+=.+-..++.+.++++.||+..++ |.-++..+..+...++..
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 77777666789999999999999999999999999976 434455666666555543
No 99
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.85 E-value=1.2 Score=45.00 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=72.9
Q ss_pred cEEEEEeCCHHHHHHHHHH------HHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHH
Q 009824 24 MRVLAVDDDQTCLKILEKF------LRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP---------DMDGFK 86 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~------L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP---------dmdGle 86 (524)
+|+=|+.|+.....-+... |-+.|+.|. ++.+...|-++.. - .+|+| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~-~--G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE-A--GCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 5666676654333222222 223499987 4456666655543 2 37877 77 111156
Q ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 009824 87 LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIR 141 (524)
Q Consensus 87 LLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr 141 (524)
+++.++...++|||+=.+-..++.+.++++.||+..++ |--++..+..+...++.
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 77777665789999999999999999999999999976 43445666666665554
No 100
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.51 E-value=0.39 Score=49.88 Aligned_cols=84 Identities=19% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEec-CCCHHHHHHHHhcCCcEEEeC
Q 009824 47 QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA-YSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 47 gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa-~~d~~~~~~al~~GA~dYL~K 125 (524)
|.+++.+.+..++-... ..-.+|++|..+- + ...+. ..-+...+|++.+ ..+......+++.||.|||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~---~-~~~~~-~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW----ARAPLVLVDADMA---E-ACAAA-GLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhcc----ccCCeEEECchhh---h-HHHhc-cCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 45566666665554333 3357899986441 1 11111 1112233665554 567889999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 009824 126 PVRMEELKNTWQHV 139 (524)
Q Consensus 126 P~~~eeL~~aI~~v 139 (524)
|++..+|..++..+
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988776
No 101
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.94 E-value=3.4 Score=35.97 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCC-CCC-CHHHHHHHHhc-CCCCcEEEEec
Q 009824 31 DDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYM-PDM-DGFKLLELVGL-EMDLPVVMLSA 104 (524)
Q Consensus 31 Ddp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~M-Pdm-dGleLLe~Lr~-~~diPVIvlTa 104 (524)
-++.-...+..+|++.||+|... ...++..+.+.+.+ ||+|.+-..+ +.. ...++++.++. .++++||+=-.
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 45677889999999999999866 23567777777654 9999998844 443 34566677764 45666654444
Q ss_pred CCCHHHHHHHHh--cCCcEEEeC
Q 009824 105 YSDTKLVMKGIN--HGACDYLLK 125 (524)
Q Consensus 105 ~~d~~~~~~al~--~GA~dYL~K 125 (524)
+. ...-...++ .|++..+.-
T Consensus 90 ~~-t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HA-TADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SS-GHHHHHHHHHHHTSEEEEEE
T ss_pred ch-hcChHHHhccCcCcceecCC
Confidence 43 334445554 566555543
No 102
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.61 E-value=5 Score=39.33 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=58.5
Q ss_pred HHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhcCCCCcEEEEecCCCH
Q 009824 38 ILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVY-------MPDMDGFKLLELVGLEMDLPVVMLSAYSDT 108 (524)
Q Consensus 38 ~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~-------MPdmdGleLLe~Lr~~~diPVIvlTa~~d~ 108 (524)
.+.+.+++ .+..+. .+.+.+++..+... .+|+|.+... .....++++++.++...++|||...+-.+.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCH
Confidence 34444445 566655 55677777655432 3788765321 122345778888876568999999999999
Q ss_pred HHHHHHHhcCCcEEEeC
Q 009824 109 KLVMKGINHGACDYLLK 125 (524)
Q Consensus 109 ~~~~~al~~GA~dYL~K 125 (524)
+.+.++++.||+.++.=
T Consensus 186 ~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 186 EQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999998763
No 103
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=90.20 E-value=3.7 Score=39.95 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=69.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLLe~Lr~ 93 (524)
..+|++. |-|..=..++..+|+..||+|+.. ...++.++.+.+.+ ||+|-+-..|... ...++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 3578877 778877889999999999999843 34678888887654 9999998887653 33456677754
Q ss_pred C-C--CCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 94 E-M--DLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 94 ~-~--diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
. + +++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 3 3 56666554444433 3456799998763
No 104
>PRK15320 transcriptional activator SprB; Provisional
Probab=89.82 E-value=2.2 Score=41.99 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=62.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLREC--QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~--gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
+|+|-.|.=.++-.++.++++. +..|.+|.+-...+..++.. ||.+++=.--|..--+-+-.....-++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 4777788878888899999874 66788888888888888753 665554333344333322222334578899988
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeC
Q 009824 103 SAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~K 125 (524)
+..--.....-..-.|+.+|+.|
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH
Confidence 86543322222234688888876
No 105
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=89.71 E-value=3.8 Score=40.54 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=70.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhc
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MDG-FKLLELVGL 93 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdG-leLLe~Lr~ 93 (524)
.-+|++. |.|..=..++..+|+..||+|+.. ...++.++.+.+.+ ||+|.+-..|+. +.. -++++.++.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHHh
Confidence 4577777 788888888999999999999854 34788888887765 999999988874 333 346677753
Q ss_pred -CCCCcEEEEecCCCHHHHHH---HHhcCCcEEEeCC
Q 009824 94 -EMDLPVVMLSAYSDTKLVMK---GINHGACDYLLKP 126 (524)
Q Consensus 94 -~~diPVIvlTa~~d~~~~~~---al~~GA~dYL~KP 126 (524)
..+++|++=-+--+.+...+ +-..||+.|-.-.
T Consensus 166 ~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 166 RGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred cCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 34666665554444444332 1346998887643
No 106
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=89.47 E-value=9.4 Score=34.98 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=71.1
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcC--CCCcEEEE
Q 009824 30 DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGLE--MDLPVVML 102 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLLe~Lr~~--~diPVIvl 102 (524)
|-|..-..++..+|+..||+|+- ....++.++...++. +|+|.+-..|.. +..+ ++.+.++.. .+++ |++
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~-viv 86 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDIL-LYV 86 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCe-EEE
Confidence 34445557888899999999983 456788888887764 999998887754 4443 355666533 2544 445
Q ss_pred ecCC-----C-HHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 009824 103 SAYS-----D-TKLVMKGINHGACDYLLKPVRMEELKNTWQ 137 (524)
Q Consensus 103 Ta~~-----d-~~~~~~al~~GA~dYL~KP~~~eeL~~aI~ 137 (524)
-+.. + .+...+..++|++..+...-.++++...++
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 5442 1 234456778999999987778877766554
No 107
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.07 E-value=10 Score=35.38 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=77.3
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH----HHHHH
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVT---VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK----LLELV 91 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGle----LLe~L 91 (524)
+.||||. |-|..-.+.+.+.|+..||+|. ...+.+|+.+..-++ +.|+|.+-.. .....+ +.+.+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl--~g~h~~l~~~lve~l 87 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSL--DGGHLTLVPGLVEAL 87 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEec--cchHHHHHHHHHHHH
Confidence 4566654 7888888999999999999998 456889998887554 3777665432 222333 34455
Q ss_pred hcC--CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 92 GLE--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 92 r~~--~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+.. .++. +++-+.-..+...+..+.|++.|+.--....+...-+...+.
T Consensus 88 re~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 88 REAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 433 2333 456666666777777789999999877777777665555443
No 108
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=88.36 E-value=2.2 Score=38.70 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=75.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-HH-hc-CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LV-GL-EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe-~L-r~-~~diP 98 (524)
.+-+.+.|+.+.........+|...+.+|+.-.... .+-. ..+|.+|+.+-.+-.+-+.+.+ ++ +. .+.--
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~ 83 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALSMTDF 83 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccCh--hhhceeeecccccccCCchHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999998543322 2211 2399999999888766655553 33 32 12223
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI 136 (524)
||+--.......+.+...-|+.++|.||++...|+-.+
T Consensus 84 vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 84 VILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred eEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 44333333445566777889999999999998887643
No 109
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.93 E-value=7.6 Score=37.27 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=50.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPDM--------DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDY 122 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm--------dGleLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dY 122 (524)
.+.+..++.+.... .+|.|.+.-..|.. .|++.++.++.. +++||++..+- +.+.+.+++++||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45666777766542 48999887655543 358888877544 34999888777 5788889999999999
Q ss_pred Ee
Q 009824 123 LL 124 (524)
Q Consensus 123 L~ 124 (524)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 75
No 110
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.81 E-value=5 Score=34.35 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=52.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
+||||...+.....++..+++.|++.... .........+...-...|+||+=...-.=+-...++..-...++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 48999998889999999999999998877 222222212222223478887755444434444444443456889987
Q ss_pred EecCC
Q 009824 102 LSAYS 106 (524)
Q Consensus 102 lTa~~ 106 (524)
.-..+
T Consensus 81 ~~~~~ 85 (97)
T PF10087_consen 81 SRSRG 85 (97)
T ss_pred ECCCC
Confidence 75443
No 111
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.03 E-value=11 Score=32.41 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=63.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
|||.||.=-..-...+..+++. .+++++ .+....+..+.+.+.. .+. ++.| +-+.+. ...++-+|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~-~~~~----------~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIP-VYTD----------LEELLADEDVDAVII 68 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSE-EESS----------HHHHHHHTTESEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-ccc-chhH----------HHHHHHhhcCCEEEE
Confidence 4677777766666666666665 466666 3443333333333322 233 4444 112332 23343334
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
........+.+..+++.|..=|+-||+ +.+++...++.+-+.
T Consensus 69 ~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 69 ATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp ESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred ecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 333445567789999999999999997 788888877776554
No 112
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=85.70 E-value=19 Score=36.84 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=68.0
Q ss_pred HHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCCC--HH---HHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009824 41 KFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDMD--GF---KLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 41 ~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~MPdmd--Gl---eLLe~Lr~~~diPVIvlTa~~d~~~~~~ 113 (524)
+.|-+.||.|.. ..|..-|.++.+-. + .++.-+--|=.+ |+ ..++.|...+++|||+=.+-...+.+..
T Consensus 131 e~Lv~eGF~VlPY~~~D~v~a~rLed~G---c-~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~ 206 (267)
T CHL00162 131 EFLVKKGFTVLPYINADPMLAKHLEDIG---C-ATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQ 206 (267)
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHcC---C-eEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHH
Confidence 345566999984 34555555543321 3 233333334233 33 4567777788999999999999999999
Q ss_pred HHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 009824 114 GINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 114 al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~ 142 (524)
+++.|+++.+. |--++.++..+++.++..
T Consensus 207 AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 207 AMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 99999999865 666778888888887764
No 113
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.85 E-value=13 Score=36.41 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=53.3
Q ss_pred CeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCC
Q 009824 48 YEVT-VTNRAITALKMLRENRNNFDLVISDVY-------MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGA 119 (524)
Q Consensus 48 y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~-------MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA 119 (524)
..+. .+.+.+++...... .+|+|.+... .....++++++.++...++|||...+-.+.+.+.++++.||
T Consensus 124 ~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~Ga 200 (219)
T cd04729 124 CLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGA 200 (219)
T ss_pred CeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 5443 55677887666543 3888755321 11234578888887655899999999999999999999999
Q ss_pred cEEEeC
Q 009824 120 CDYLLK 125 (524)
Q Consensus 120 ~dYL~K 125 (524)
+..+.=
T Consensus 201 dgV~vG 206 (219)
T cd04729 201 DAVVVG 206 (219)
T ss_pred CEEEEc
Confidence 998763
No 114
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=83.04 E-value=13 Score=43.22 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=73.1
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHhcCC--CCcEEEE
Q 009824 30 DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-M-DGFKLLELVGLEM--DLPVVML 102 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVIlDi~MPd-m-dGleLLe~Lr~~~--diPVIvl 102 (524)
|.|..-...+..+|+..||+|.. ..+.+++.+...+.. +|+|++=..+.. + ..-++++.|+..- +++ |++
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~-vl~ 669 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKLGREDIM-VVV 669 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhcCCCCcE-EEE
Confidence 44455556788889989999973 346788888877654 888776554433 2 2345667776442 233 445
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+..-++......+.|+++|+..-.+..+++..+...++
T Consensus 670 GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 670 GGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred eCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 555334444567789999999998999888887777664
No 115
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=81.36 E-value=12 Score=36.35 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=59.4
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcC---CCCcEEE
Q 009824 30 DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGLE---MDLPVVM 101 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLLe~Lr~~---~diPVIv 101 (524)
|.|..=..++..+|+..||+|+.. ...++.++.+.+.+ ||+|.+-..|+. +..+ ++++.++.. .+++|++
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~v 172 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMV 172 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 455566677888899999999844 35688888887765 999999988764 3333 455666543 2355554
Q ss_pred EecCCCHHHHHHHHhcCCcEEEe
Q 009824 102 LSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~ 124 (524)
=-..-..+ -+.+.||+.|-.
T Consensus 173 GG~~~~~~---~~~~~gad~~~~ 192 (197)
T TIGR02370 173 GGAPVTQD---WADKIGADVYGE 192 (197)
T ss_pred EChhcCHH---HHHHhCCcEEeC
Confidence 33333332 345679999864
No 116
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=80.64 E-value=15 Score=38.37 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=61.3
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009824 39 LEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (524)
Q Consensus 39 L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~ 112 (524)
+-..|+..|..|. .+.+.++|.++.+. .+|.|++.-.-.+ ..-++++..++...++|||.--+-.+...+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 4445566677665 56778888766543 4899888443221 2347888888666679999999999999999
Q ss_pred HHHhcCCcEEEeC
Q 009824 113 KGINHGACDYLLK 125 (524)
Q Consensus 113 ~al~~GA~dYL~K 125 (524)
+++..||+....=
T Consensus 178 ~al~~GA~gV~iG 190 (307)
T TIGR03151 178 AAFALGAEAVQMG 190 (307)
T ss_pred HHHHcCCCEeecc
Confidence 9999999998763
No 117
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=79.31 E-value=21 Score=31.67 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhc-CCCCcEEEEecCCCH
Q 009824 33 QTCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGL-EMDLPVVMLSAYSDT 108 (524)
Q Consensus 33 p~~~~~L~~~L~~~gy~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~Lr~-~~diPVIvlTa~~d~ 108 (524)
|.-...+..+|++.|++|... ...++.++.+... .+||+|.+-+.-+.. ...++++.+|. .++++||+--.+...
T Consensus 2 plgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~ 80 (127)
T cd02068 2 PLGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF 80 (127)
T ss_pred cchHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh
Confidence 345667888998888877643 3456666666542 359999998855544 35567777764 567777655444332
Q ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 109 KLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 109 ~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
. ....+..-..||+.+--....+...++.+.+
T Consensus 81 ~-p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~ 112 (127)
T cd02068 81 F-PEEILEEPGVDFVVIGEGEETFLKLLEELEE 112 (127)
T ss_pred C-HHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 2 2222444556788876555555555555433
No 118
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=78.58 E-value=7.4 Score=39.69 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=66.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa 104 (524)
|.+.-.++.....+..+|....|.++.+.++++.++.+++++..+|++|+.... .-..++..+. ...-.|+|++..
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g~LLPaVil~~ 79 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQGILLPAVILGS 79 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT----EEEES-
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcCccccEEEEec
Confidence 455566788889999999988999999999999999999888889999998754 3445566663 445689999866
Q ss_pred CCCHHHHHHHHhcCCcEE-----EeCCCCHHHHHHHHHHHHHh
Q 009824 105 YSDTKLVMKGINHGACDY-----LLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~dY-----L~KP~~~eeL~~aI~~vlr~ 142 (524)
..... ..-..|...| -.+.-..++|-..|.+++.+
T Consensus 80 ~~s~~---~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsr 119 (283)
T PF07688_consen 80 SESAS---TTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISR 119 (283)
T ss_dssp --S-----TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHH
T ss_pred Ccccc---cCCCCCceeeehHheEccHHHHHHHHHHHHHHHHH
Confidence 32211 1112444444 33334455665666666543
No 119
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=77.24 E-value=13 Score=36.58 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=47.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~--~~pDLVIlDi~ 78 (524)
+|.+-+|.-||-++...+..+..+++.|+ +|. ...++.+.+..+.... +.||+||+|..
T Consensus 67 l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 67 LPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp STTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred hcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 56667999999999999999999998876 455 5578888888776432 36999999984
No 120
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=76.77 E-value=32 Score=33.71 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 56 AITALKMLRENRNNFD-LVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 56 g~eALe~L~e~~~~pD-LVIlDi~MPdm-dG--leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..+..+.+.+. .+| +++.|+.--++ .| +++++.++...++|||+-.+-.+.+.+.++++.||++.+.
T Consensus 147 ~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 147 LEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34455555443 366 77788854432 22 6777777666789999999999999999999999999876
No 121
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=76.71 E-value=11 Score=39.06 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=60.7
Q ss_pred EEEEeCCHHHHH---HHHHHHHh----C-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCC
Q 009824 26 VLAVDDDQTCLK---ILEKFLRE----C-QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (524)
Q Consensus 26 VLIVDDdp~~~~---~L~~~L~~----~-gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~d 96 (524)
|||=|.|-...- .+...++. . ...| +.+.+.+++.+++.. .+|+|++| +|+-.+-.+.++.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 677676655443 34444332 1 2223 367899999999864 38999999 3443333444455542222
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-.+|-.++.-+.+.+.+..+.|++-+.+
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLFIT 262 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 3467788899999999999999887644
No 122
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=76.57 E-value=37 Score=33.15 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=54.5
Q ss_pred HHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009824 42 FLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 42 ~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~ 113 (524)
.+++.+..+. .+.+.+++.++. +. ..|.|+++-.-++ ...+++++.++...++||++.-+-...+.+.+
T Consensus 97 ~~~~~~i~~i~~v~~~~~~~~~~-~~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~ 173 (236)
T cd04730 97 RLKAAGIKVIPTVTSVEEARKAE-AA--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAA 173 (236)
T ss_pred HHHHcCCEEEEeCCCHHHHHHHH-Hc--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHH
Confidence 3444455554 344555554443 33 3788887653221 14567888777666799999988888889999
Q ss_pred HHhcCCcEEEeC
Q 009824 114 GINHGACDYLLK 125 (524)
Q Consensus 114 al~~GA~dYL~K 125 (524)
++..||+...+-
T Consensus 174 ~l~~GadgV~vg 185 (236)
T cd04730 174 ALALGADGVQMG 185 (236)
T ss_pred HHHcCCcEEEEc
Confidence 999999998774
No 123
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=75.72 E-value=28 Score=36.81 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=71.2
Q ss_pred cEEEEEeCCHHHHHHHHHHH------HhCCCeE-E-EECCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHH
Q 009824 24 MRVLAVDDDQTCLKILEKFL------RECQYEV-T-VTNRAITALKMLRENRNNFDLVISDVYMP---------DMDGFK 86 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L------~~~gy~V-~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP---------dmdGle 86 (524)
+|+=|+.|++....-+...+ -+.|+.| . ++.+...|-++..- .| +. .|| +..--+
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~a----vmPl~~pIGsg~gv~~p~ 239 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VA----VMPLGAPIGSGLGIQNPY 239 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EE----EeeccccccCCCCCCCHH
Confidence 45556666544443332222 2349988 3 55667776655432 24 22 244 122234
Q ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 009824 87 LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 87 LLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~ 142 (524)
.++.+...+++|||+=.+-...+.+..+++.||++.|. |--++..+..+.+.++..
T Consensus 240 ~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 240 TIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 55666556789999999999999999999999999876 555667777777766653
No 124
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.00 E-value=82 Score=32.02 Aligned_cols=95 Identities=20% Similarity=0.115 Sum_probs=61.1
Q ss_pred EEEEeC-CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeC-C--CCCCCHHHHHHHH-hcCC-CCc
Q 009824 26 VLAVDD-DQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDV-Y--MPDMDGFKLLELV-GLEM-DLP 98 (524)
Q Consensus 26 VLIVDD-dp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi-~--MPdmdGleLLe~L-r~~~-diP 98 (524)
.|++.+ .+.....+....+..|.++. .+.+.+|+.+++.. .+|+|-+.- . --..| ++....+ +..+ +.+
T Consensus 138 lLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~ 213 (260)
T PRK00278 138 LLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRL 213 (260)
T ss_pred EEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCE
Confidence 344444 34344444444455688765 77888888766542 378776531 1 11122 5555544 3334 468
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+|..++-.+.+.+.+++++||+.+++
T Consensus 214 vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 214 VVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999876
No 125
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=74.48 E-value=12 Score=36.00 Aligned_cols=67 Identities=28% Similarity=0.461 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH---HHHHHHHh
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE--V-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDG---FKLLELVG 92 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~--V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdG---leLLe~Lr 92 (524)
-+|+.||-++.....+++-++.++.. + +...+...++..+......+|+|++| -|-..+ .++++.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD--PPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD--PPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC--CCcccchHHHHHHHHHH
Confidence 47999999999999999999987643 3 35678888887765444579999999 354333 44666664
No 126
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=74.46 E-value=78 Score=30.76 Aligned_cols=78 Identities=18% Similarity=0.045 Sum_probs=53.2
Q ss_pred HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEe-CCC-CCCCHHHHHHHHhcC--CCCcEEEEecCCCHHHHHHHHhcC
Q 009824 44 RECQYEVT-VTNRAITALKMLRENRNNFDLVISD-VYM-PDMDGFKLLELVGLE--MDLPVVMLSAYSDTKLVMKGINHG 118 (524)
Q Consensus 44 ~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlD-i~M-PdmdGleLLe~Lr~~--~diPVIvlTa~~d~~~~~~al~~G 118 (524)
...|..+. .+.+.+++.+..+. .+|.+.+- ... ....++++++.++.. .++|||...+-...+.+.+++++|
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 34577654 56777776666543 37777554 110 012345777766543 478999999999999999999999
Q ss_pred CcEEEe
Q 009824 119 ACDYLL 124 (524)
Q Consensus 119 A~dYL~ 124 (524)
|+++++
T Consensus 195 a~gviv 200 (217)
T cd00331 195 ADAVLI 200 (217)
T ss_pred CCEEEE
Confidence 999876
No 127
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.31 E-value=17 Score=37.77 Aligned_cols=95 Identities=13% Similarity=0.021 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC-C-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 26 VLAVDDDQTCLKILEKFLRE----CQ-Y-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~----~g-y-~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
|||=|.|-...-.+...+++ .. . -.+.+.+.+++.+++.. .+|+|.+| +|.-.+=-+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 66656554433334444432 22 2 23477899999999863 38999999 3431111222333332333346
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
|..|+.-+.+.+.+..+.|++.+-+
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEe
Confidence 8888999999999999999887644
No 128
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=74.29 E-value=24 Score=32.94 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=49.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPD--------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPd--------mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
.+.+..++.+.+.. .+|.|++...-|. ..|++.++.++...++||++..+-. .+.+.++++.|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEE
Confidence 34566676665542 3899998765443 3467888877655789999887774 6788899999999886
Q ss_pred e
Q 009824 124 L 124 (524)
Q Consensus 124 ~ 124 (524)
.
T Consensus 177 ~ 177 (196)
T cd00564 177 V 177 (196)
T ss_pred E
Confidence 5
No 129
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=73.91 E-value=40 Score=34.17 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHH
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV-RMEEL 132 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~-~~eeL 132 (524)
.....+++... .||.|++|..--.+|--++...++ ....++.|+-....+...+.++++.||.+++..=+ +.++.
T Consensus 22 sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea 99 (249)
T TIGR03239 22 NPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEA 99 (249)
T ss_pred CcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHH
Confidence 34556666543 499999999887777766666664 23456777788888999999999999999988555 45666
Q ss_pred HHHHHHH
Q 009824 133 KNTWQHV 139 (524)
Q Consensus 133 ~~aI~~v 139 (524)
..+++.+
T Consensus 100 ~~~v~a~ 106 (249)
T TIGR03239 100 ERAVAAT 106 (249)
T ss_pred HHHHHHc
Confidence 6665543
No 130
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=73.82 E-value=37 Score=34.57 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred HHHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHH
Q 009824 38 ILEKFLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 38 ~L~~~L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~ 113 (524)
.|++.|+.-...+ ........+.+++... .+|.|++|..--..|--++...++ ....++.|+-....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 3666666522211 1223334556666543 499999999887777767766664 234577788888889999999
Q ss_pred HHhcCCcEEEeCCC-CHHHHHHHHHHH
Q 009824 114 GINHGACDYLLKPV-RMEELKNTWQHV 139 (524)
Q Consensus 114 al~~GA~dYL~KP~-~~eeL~~aI~~v 139 (524)
+++.||.+++..=+ +.++...+++..
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999988555 456666666554
No 131
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=73.77 E-value=5.4 Score=38.99 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=51.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCCCH--HHHHHHHhcCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM--PDMDG--FKLLELVGLEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~M--PdmdG--leLLe~Lr~~~diP 98 (524)
+++||+||.....--.|.++|+..|++|++..+....++.++.. .||.|++---- |...| ++++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 36899999999999999999999998888665543333344433 38988885321 32223 3344433 35688
Q ss_pred EEEEe
Q 009824 99 VVMLS 103 (524)
Q Consensus 99 VIvlT 103 (524)
|+=+.
T Consensus 77 iLGVC 81 (191)
T COG0512 77 ILGVC 81 (191)
T ss_pred EEEEC
Confidence 87553
No 132
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=72.84 E-value=65 Score=32.73 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=63.6
Q ss_pred cEEEEEeCCHH----HHHH--HHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHH
Q 009824 24 MRVLAVDDDQT----CLKI--LEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPDMDGF-----KLLEL 90 (524)
Q Consensus 24 irVLIVDDdp~----~~~~--L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl-----eLLe~ 90 (524)
+|+=|+.|+.. ..+. -.+.|-+.||.|. +..|..-|-++.+ - .+.. +.=+--|=.+|. ..++.
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d-~--Gcaa-vMPlgsPIGSg~Gi~n~~~l~~ 169 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLED-A--GCAA-VMPLGSPIGSGRGIQNPYNLRI 169 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHH-T--T-SE-BEEBSSSTTT---SSTHHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHH-C--CCCE-EEecccccccCcCCCCHHHHHH
Confidence 45556655532 2222 2345667799998 3455555555443 2 1332 333444434443 35566
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHH
Q 009824 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIR 141 (524)
Q Consensus 91 Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K-----P~~~eeL~~aI~~vlr 141 (524)
|....++|||+=.+-+.+..+..+++.|++..|+- --++..+..+.+.++.
T Consensus 170 i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 170 IIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 65556999999999999999999999999999984 4456666666666654
No 133
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=72.49 E-value=43 Score=37.16 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHh-cCCCCcEEEE
Q 009824 32 DQTCLKILEKFLRECQ-YEVTVTN------RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 32 dp~~~~~L~~~L~~~g-y~V~~a~------sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~Lr-~~~diPVIvl 102 (524)
.|.-...|...|++.| ++|.... +.++..+.+++. .||+|.+-..-+.. ...++++.+| ..|+++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4777888999999889 5777543 234445556554 49999987655543 3456777775 4577777755
Q ss_pred ecCCCHHHHHHHHh-cCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 103 SAYSDTKLVMKGIN-HGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 103 Ta~~d~~~~~~al~-~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
-.+... ...++++ ....||++.--..+.+...++.+..
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 444432 2344553 4567899988777767777766543
No 134
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=72.14 E-value=23 Score=30.69 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=51.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHH-hcCC-CCcEEEEe
Q 009824 30 DDDQTCLKILEKFLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELV-GLEM-DLPVVMLS 103 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~L-r~~~-diPVIvlT 103 (524)
|-++.-...+..+|++.||++.... ...+..+.+.+. .||+|.+-..+... ..++.+..+ +..+ +++|++=-
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG 87 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGG 87 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 6677778889999999999988543 556677777664 49999999877653 345555555 4455 67776554
Q ss_pred cC
Q 009824 104 AY 105 (524)
Q Consensus 104 a~ 105 (524)
..
T Consensus 88 ~~ 89 (125)
T cd02065 88 AH 89 (125)
T ss_pred Cc
Confidence 33
No 135
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=72.10 E-value=42 Score=36.44 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=63.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
.++++||.|.+. ...++++.+.....+.-.-..++..+++.. .|++++=.. .+.=|+.+++.+. ..+|||..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 467777776653 344555444322222222334555555543 567665322 2333666777664 35899854
Q ss_pred ecCCCHHHHHHHHhc---CCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 103 SAYSDTKLVMKGINH---GACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 103 Ta~~d~~~~~~al~~---GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.. .. ..+.+.. |-++++..|-+.++|..++..++.
T Consensus 362 ~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 33 33 2334455 899999999999999999988875
No 136
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=72.09 E-value=44 Score=35.56 Aligned_cols=105 Identities=10% Similarity=0.148 Sum_probs=62.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-C-CCeEE-EECCHHHHHHHHHhcCCCceE-EEEeCCCCCCCHHHHHHHHhcCCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE-C-QYEVT-VTNRAITALKMLRENRNNFDL-VISDVYMPDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~-~-gy~V~-~a~sg~eALe~L~e~~~~pDL-VIlDi~MPdmdGleLLe~Lr~~~di 97 (524)
+.+||.||.- -. ...-...+.. . +++++ .+....+..+.+.+. +++ +..|+ -++ + ...++
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---~gi~~y~~~-------eel---l-~d~Di 65 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHR---LGVPLYCEV-------EEL---P-DDIDI 65 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---hCCCccCCH-------HHH---h-cCCCE
Confidence 4589999997 43 3333333443 3 57877 444444433433332 332 12222 122 2 34566
Q ss_pred cEEEEe----cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLS----AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlT----a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
-+|.+. .....+.+.+++++|..=++-||+..+|..+.++.+-++
T Consensus 66 ~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 66 ACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred EEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 666662 235578899999999999999999987777777766543
No 137
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=71.22 E-value=38 Score=36.14 Aligned_cols=111 Identities=12% Similarity=0.128 Sum_probs=59.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeE---------------EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEV---------------TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKL 87 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V---------------~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleL 87 (524)
.++++||-|++.-...+++.+++.|... .......+..+.+. ..|++++--...+.-|.-+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----IADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH----hCCEEEECCCcCCCCCCCH
Confidence 4667777777655456666666655432 22222233333332 1577655222211234445
Q ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 88 LELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 88 Le~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+|.+. ..+|||+--...+...+.+.+.. .+++..|-+.++|..++..++.
T Consensus 338 lEAma--~G~PVI~g~~~~~~~e~~~~~~~--~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA--FGVPVISGPHTFNFKEIFERLLQ--AGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH--hCCCEEECCCccCHHHHHHHHHH--CCCeEEECCHHHHHHHHHHHhc
Confidence 55543 35788853322334444443321 2466668889999999988764
No 138
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=71.18 E-value=29 Score=35.96 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=62.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC---------------------------------CC--CCCCHHHHHHHHhcCCC
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDV---------------------------------YM--PDMDGFKLLELVGLEMD 96 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi---------------------------------~M--PdmdGleLLe~Lr~~~d 96 (524)
-+.+.+||+...+. .+|+|=+=+ .. ....|+++++.+.....
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~ 194 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGR 194 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC
Confidence 45678888888764 378776544 01 12357888888866667
Q ss_pred CcEE--EEecCCCHHHHHHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHHh
Q 009824 97 LPVV--MLSAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVI--vlTa~~d~~~~~~al~~GA~dYL~K-----P~~~eeL~~aI~~vlr~ 142 (524)
+||| ...+-..++.+.++++.||+.+++= .-++.+....+..++.+
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 9997 6777779999999999999998763 33566666666666554
No 139
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=70.85 E-value=51 Score=33.85 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHH
Q 009824 38 ILEKFLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 38 ~L~~~L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~ 113 (524)
.|++.|+.-...+ ........+.+++... .||.|++|..--..|--++...++ ....++.++-....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 3566665522211 1222334555666543 499999999887777666665554 234566677778888999999
Q ss_pred HHhcCCcEEEeCCCC-HHHHHHHHHHH
Q 009824 114 GINHGACDYLLKPVR-MEELKNTWQHV 139 (524)
Q Consensus 114 al~~GA~dYL~KP~~-~eeL~~aI~~v 139 (524)
+++.||.+.+..-++ .++...+++..
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 999999999996654 55665555544
No 140
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=70.50 E-value=30 Score=32.91 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=49.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPD--------MDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPd--------mdGleLLe~Lr-~~~diPVIvlTa~~d~~~~~~al~~GA~dY 122 (524)
.+.+.+++.++.+ ..+|.|.++-..|. ..|++.++.+. ..+++||+++-+- +.+.+.++++.|++++
T Consensus 102 s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 5677777766543 24899998766552 23788888774 3456998888666 5788889999999987
Q ss_pred Ee
Q 009824 123 LL 124 (524)
Q Consensus 123 L~ 124 (524)
..
T Consensus 178 a~ 179 (196)
T TIGR00693 178 AV 179 (196)
T ss_pred EE
Confidence 65
No 141
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=69.85 E-value=30 Score=35.92 Aligned_cols=61 Identities=20% Similarity=0.069 Sum_probs=47.6
Q ss_pred CHHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHhc
Q 009824 83 DGFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 83 dGleLLe~Lr~~~diPVI--vlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~~ 143 (524)
-|+++++.+.....+||| ...+-..++.+..++++||+.+++ |.-++.+....+..++..+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 588899888666679998 677777999999999999999865 4446777777676666654
No 142
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=69.61 E-value=35 Score=35.25 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=62.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~--V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++++++.+.+. ...++..++..+.. |.......+..+.+.. .|++++=-. .+.=|..+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 356666665543 34455555554432 3322222333334332 466554221 2334667777764 457887
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+ |..+. ..+.+..|.++++..|-+.+++..++..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 43333 3455667889999999999999999988764
No 143
>PRK12704 phosphodiesterase; Provisional
Probab=69.11 E-value=5.3 Score=44.77 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=39.9
Q ss_pred cEEEEecCCCHH--HHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLSAYSDTK--LVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlTa~~d~~--~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.+|++|+.+... .+..+++.++.|+..||++++++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 489999998876 899999999999999999999999998876653
No 144
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=67.94 E-value=1e+02 Score=29.33 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=61.3
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHhcCCCceEEEEeCC-CC----CCCHHHHHHHH
Q 009824 23 GMRVLAVDDDQ--TCLKILEKFLRECQYEVT----VTNRAITALKMLRENRNNFDLVISDVY-MP----DMDGFKLLELV 91 (524)
Q Consensus 23 ~irVLIVDDdp--~~~~~L~~~L~~~gy~V~----~a~sg~eALe~L~e~~~~pDLVIlDi~-MP----dmdGleLLe~L 91 (524)
+...+++.+.+ .....+.+.+++.|..+. .+.+..++++.+.. .+|.|.+... .+ ...+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL---GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC---CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 34445554433 233444555556666654 44577777774432 4788877421 11 23456777766
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 92 r~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+...++||++.-+- ..+.+.++++.||+.++.=
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 64467888776666 4888999999999988763
No 145
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=67.79 E-value=80 Score=31.19 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=45.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.|++|+=....+.-|+.+++.+. ..+|||.. .... ..+.+..|..+++.++-+.+++..++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666533223445667777774 35788753 3332 4455677888999999999999999998875
No 146
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.53 E-value=24 Score=35.29 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdm-dG--leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.++.+.+. .--.+|++|+..-++ .| +++++.+....++|||+-.+..+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4455555432 123699999987653 34 5677777666789999999999999999999999999887
No 147
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=66.40 E-value=47 Score=33.70 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=68.7
Q ss_pred cEEEEEeCCHH------HHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHH
Q 009824 24 MRVLAVDDDQT------CLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGF-----KLLEL 90 (524)
Q Consensus 24 irVLIVDDdp~------~~~~L~~~L~~~gy~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl-----eLLe~ 90 (524)
+|+=|+-|+.. -.-.-.++|-+.||.|..+ .+..-|-++ ++-- + ..++-+--|=.+|+ ..++.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrL-ee~G--c-aavMPl~aPIGSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRL-EEAG--C-AAVMPLGAPIGSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHH-HhcC--c-eEeccccccccCCcCcCCHHHHHH
Confidence 45555555422 2222334566679999843 445545443 3321 2 33444444434443 34566
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC-----CCHHHHHHHHHHHH
Q 009824 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP-----VRMEELKNTWQHVI 140 (524)
Q Consensus 91 Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP-----~~~eeL~~aI~~vl 140 (524)
|..+.++|||+=.+-+.+..+..+++.|++..|.-. -++-.+..+...++
T Consensus 177 iie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av 231 (262)
T COG2022 177 IIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAV 231 (262)
T ss_pred HHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHH
Confidence 666679999999999999999999999999998742 23344444444443
No 148
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=66.29 E-value=1.2e+02 Score=32.06 Aligned_cols=109 Identities=12% Similarity=0.154 Sum_probs=64.3
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 23 GMRVLAVDDDQ--------TCLKILEKFLRECQYEVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 23 ~irVLIVDDdp--------~~~~~L~~~L~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
.++++||.|.+ ...+.++.+....+-.|.... ..++..+.+.. .|++++=....+.=|+.+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 36677776532 223344444444444454332 34455555542 57777643333333556667664
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhcCCcEE-EeCCCCHHHHHHHHHHHHH
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGINHGACDY-LLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al~~GA~dY-L~KP~~~eeL~~aI~~vlr 141 (524)
..+|||.. ..+. ..+.+..|.++| +..|.+.++|..++..++.
T Consensus 300 --~G~PVI~s-~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 --AGKPVLAS-TKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred --cCCCEEEe-CCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 35888764 3333 334566788898 5678999999999988875
No 149
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=66.18 E-value=26 Score=35.16 Aligned_cols=58 Identities=12% Similarity=0.263 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 84 GFKLLELVGLEMDLPVVMLSAYSD------TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~~d------~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
++++++.++...++|+++|+-... ...+.++.++|+++.+.-.+..+++...++.+.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 455666666555899988876543 5667888899999999966667776666655543
No 150
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=66.14 E-value=57 Score=29.79 Aligned_cols=56 Identities=20% Similarity=0.086 Sum_probs=41.5
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 69 NFDLVISDVYMPDMDG-------FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..|.|.++-..+...+ ...+..++....+||+...+-.+.+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 3788888877765432 2334445556789999999888889999999999988764
No 151
>PLN02591 tryptophan synthase
Probab=65.70 E-value=19 Score=36.60 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=44.5
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 83 DGFKLLELVGLEMDLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 83 dGleLLe~Lr~~~diPVIvlTa~~------d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+.+++++.+|...++|+|+||=.. -.....++.++|+++.|.-.+..+|.......+.+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 356777777766789999888543 33457788899999999988888888777666544
No 152
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=65.47 E-value=83 Score=31.80 Aligned_cols=83 Identities=17% Similarity=0.108 Sum_probs=60.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC-CCHHH
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP-VRMEE 131 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP-~~~ee 131 (524)
......+.+... .+|.|++|+.--..|--++...++. ...+.+|+-....+...+.++++.||.+.+.-- -+.++
T Consensus 21 ~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~ 98 (249)
T TIGR02311 21 ADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQ 98 (249)
T ss_pred CCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHH
Confidence 344556666543 4999999998766777677666643 234577777788888899999999999987744 56777
Q ss_pred HHHHHHHH
Q 009824 132 LKNTWQHV 139 (524)
Q Consensus 132 L~~aI~~v 139 (524)
+..+++.+
T Consensus 99 a~~~v~~~ 106 (249)
T TIGR02311 99 AEAAVAAT 106 (249)
T ss_pred HHHHHHHc
Confidence 77766655
No 153
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=65.39 E-value=83 Score=30.59 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=64.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++++|+.+.+. ...+...++..+. .|......++..+.+.. .|+++.-... +.-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 466777765543 2334444444433 33333333444445442 6788776554 333667777764 457887
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+....... ......|..+++.++.+.+++..++..++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 54333332 234456678999999999999999998864
No 154
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.99 E-value=63 Score=33.46 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=62.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----C-CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-C-CCC
Q 009824 26 VLAVDDDQTCLKILEKFLREC----Q-YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-E-MDL 97 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~----g-y~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~-~di 97 (524)
|||-|+|-... .+...++.. . ..| +.+.+.+++.+++.. .+|+|.+|-..|+. =-+.++.++. . ..-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e~-l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPEE-IREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHHH-HHHHHHHHHhcCcCCC
Confidence 78888886665 566665431 1 233 378899999999864 38999999765431 1122233332 1 123
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..|..|+.-+.+.+.+..+.|++.+.+
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 467788888999999999999887654
No 155
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.74 E-value=33 Score=35.63 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=57.8
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCC
Q 009824 26 VLAVDDDQTCLKILEKFLR----ECQ--YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDL 97 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~----~~g--y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~di 97 (524)
|||=|.|-...-.+...++ ..+ ..|. .+.+.+|+.+++.. .+|+|.+|-.-| .+=-+.++.++. .+++
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~-e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPV-DLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHHHhcCCCe
Confidence 6776666444433444443 234 3343 67899999999863 489999993222 111122333432 4555
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
| |..++.-+.+.+.+....|++.+-+
T Consensus 245 ~-leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 245 K-IEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 5 5566677888898999999987654
No 156
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=64.59 E-value=76 Score=30.75 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=63.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-HHhcCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQ--YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe-~Lr~~~diPVI 100 (524)
-+++|+.+++..++.++++++..| |.|....+-+++++.++..-..|.|+..+....+ .++-++ .+.. .-|++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~--~~p~L 107 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK--GEPLL 107 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc--CCcEE
Confidence 368999999999999999999864 6788999999999988743235788888888866 444443 2322 44665
Q ss_pred EEec-CCCHHHHHHHHhcCCcEEEeC
Q 009824 101 MLSA-YSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 101 vlTa-~~d~~~~~~al~~GA~dYL~K 125 (524)
++-+ ..=+..+.+ .+||.+-
T Consensus 108 IvvGg~gvp~evye-----~aDynlg 128 (176)
T PRK03958 108 IVVGAEKVPREVYE-----LADWNVA 128 (176)
T ss_pred EEEcCCCCCHHHHh-----hCCEEec
Confidence 5554 333333332 3466653
No 157
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=64.55 E-value=60 Score=36.01 Aligned_cols=98 Identities=17% Similarity=0.240 Sum_probs=61.0
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 009824 23 GMRVLAVDDD----QTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (524)
Q Consensus 23 ~irVLIVDDd----p~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (524)
++.+++||.. ..+...++.+-+.. +..|. .+.+.++|..+++. .+|.|.+-+ =|+ ..
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGVP 315 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCcC
Confidence 5678888864 12333344433333 33433 45677888887753 378776533 122 11
Q ss_pred HHHHHHHH-h--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLLELV-G--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLLe~L-r--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-++++..+ + ....+|||.=.+......+.+|+.+||+..+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 23444333 2 23478999888999999999999999999876
No 158
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=64.37 E-value=55 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=16.8
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 009824 28 AVDDDQTCLKILEKFLRECQYEVTVTN 54 (524)
Q Consensus 28 IVDDdp~~~~~L~~~L~~~gy~V~~a~ 54 (524)
+-|.+......+...|...||++....
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEch
Confidence 344555555566666777799886443
No 159
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=64.37 E-value=59 Score=36.31 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
..++|||.=.+......+.+|+.+||+....=
T Consensus 342 ~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 342 ERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 35689888888899999999999999998763
No 160
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=64.01 E-value=56 Score=34.31 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=55.3
Q ss_pred HHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-C----C-CC-CHHHHHHHHhcCCCCcEEEEecCCCHHHH
Q 009824 40 EKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY-M----P-DM-DGFKLLELVGLEMDLPVVMLSAYSDTKLV 111 (524)
Q Consensus 40 ~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~-M----P-dm-dGleLLe~Lr~~~diPVIvlTa~~d~~~~ 111 (524)
.+.++..|..|. .+.+.++|..+++. .+|.|++-=. - . .. +-+.|+..++...++|||.--+-.+...+
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~i 205 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGI 205 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHH
T ss_pred HHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHH
Confidence 345667787776 78999999887764 3898887532 1 1 12 24666677776677999999999999999
Q ss_pred HHHHhcCCcEEEe
Q 009824 112 MKGINHGACDYLL 124 (524)
Q Consensus 112 ~~al~~GA~dYL~ 124 (524)
..++..||++...
T Consensus 206 aaal~lGA~gV~~ 218 (330)
T PF03060_consen 206 AAALALGADGVQM 218 (330)
T ss_dssp HHHHHCT-SEEEE
T ss_pred HHHHHcCCCEeec
Confidence 9999999999876
No 161
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=63.45 E-value=64 Score=36.25 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=19.4
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..++++||....+ .+......+.||+..+.
T Consensus 505 ~~~~~~iiar~~~--~~~~~~l~~~Gad~vv~ 534 (558)
T PRK10669 505 KRPDIEIIARAHY--DDEVAYITERGANQVVM 534 (558)
T ss_pred HCCCCeEEEEECC--HHHHHHHHHcCCCEEEC
Confidence 4577888877643 44555556788886663
No 162
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=63.41 E-value=59 Score=35.52 Aligned_cols=107 Identities=13% Similarity=0.201 Sum_probs=64.5
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCC
Q 009824 23 GMRVLAVDDD---QTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 23 ~irVLIVDDd---p~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~di 97 (524)
.++++|+.+. +...+.++.+.++.+. .|.... ..+..+.+. ..|++++--. .+.-|+.+++.+. ..+
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAma--~G~ 395 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAMA--AGI 395 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHHH--cCC
Confidence 3566666543 3455556666655543 343333 333333333 2677776543 2344667777764 357
Q ss_pred cEEEEecCCCHHHHHHHHhc------CCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 98 PVVMLSAYSDTKLVMKGINH------GACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~------GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
|||. |..+.. .+.+.. |.++++..|-+.++|..++..++.
T Consensus 396 PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 396 PVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 8876 444433 344444 789999999999999999998865
No 163
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=63.26 E-value=37 Score=33.26 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC-CcEEEe
Q 009824 57 ITALKMLRENRNNFD-LVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG-ACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~MPdm-dG--leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~G-A~dYL~ 124 (524)
.+..+.+.+. .++ +++.|...-++ .| +++++.+.....+|||.-.+-.+.+.+.++++.| |++.+.
T Consensus 149 ~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 5555555543 256 78888765432 34 6788888665679999999999999999999988 988876
No 164
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.21 E-value=73 Score=33.14 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=59.9
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------------HHhcCCCceEEEEeCCCCCCCHH
Q 009824 24 MRVLAV--DDDQTCL---KILEKFLRECQYEVTVTNRAITALKM-------------LRENRNNFDLVISDVYMPDMDGF 85 (524)
Q Consensus 24 irVLIV--DDdp~~~---~~L~~~L~~~gy~V~~a~sg~eALe~-------------L~e~~~~pDLVIlDi~MPdmdGl 85 (524)
|+|.|+ -+.+... ..+..+|++.|++|.......+.+.. .......+|+||+ -|.||.
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 566666 2334444 45555677788888765432222210 0111123677776 488995
Q ss_pred HHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 86 KLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 86 eLLe~Lr--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+ ...++||+=+- .|-.+||. .+..+++..+++.++++.
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 444333 23478988553 35567887 578899999999988754
No 165
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=62.56 E-value=79 Score=28.52 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=68.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNR--AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~s--g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
.++++|+.+.+... .+....+..+. .+..... ..+..+++.. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEccccccc-cccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 46778887443333 34444444333 3444433 3466666653 5787775555 555677777764 3467
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
||+ +... ...+.+..+..+++..+.+.+++..++..++...
T Consensus 119 vI~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 774 3332 3456778888999999999999999999988754
No 166
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=62.51 E-value=80 Score=30.50 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=60.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCC-CCC-CCHHHHHHHHhcCCC
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTN-------RAITALKMLRENRNNFDLVISDVY-MPD-MDGFKLLELVGLEMD 96 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVIlDi~-MPd-mdGleLLe~Lr~~~d 96 (524)
|||=|.|...++.++..-++.|-++...+ ++++.++++.+.+.+|=+|..|-. .++ ..|-+.++++-..++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 67778888888899988888898888654 689999999887766777777653 343 467788888877787
Q ss_pred CcE---EEEecCC
Q 009824 97 LPV---VMLSAYS 106 (524)
Q Consensus 97 iPV---IvlTa~~ 106 (524)
+-| |.+.+..
T Consensus 83 IeVLG~iAVASnT 95 (180)
T PF14097_consen 83 IEVLGAIAVASNT 95 (180)
T ss_pred ceEEEEEEEEecC
Confidence 765 4444443
No 167
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=62.31 E-value=1.2e+02 Score=31.08 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcE------EEeCCCCHHHHHHHHHHHHHhc
Q 009824 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACD------YLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 86 eLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~d------YL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+.+..++...++|||..-+-.+.+.+.+++..||+. ++.+|.-..++..-+...+...
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 556666666679999999999999999999999886 4556755555666666555543
No 168
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.21 E-value=1.3e+02 Score=31.96 Aligned_cols=98 Identities=9% Similarity=0.102 Sum_probs=62.5
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCC----------CC-CCC--H
Q 009824 25 RVLAVDDD----QTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVY----------MP-DMD--G 84 (524)
Q Consensus 25 rVLIVDDd----p~~~~~L~~~L~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~----------MP-dmd--G 84 (524)
.+++||-- ....+.++.+=+... ..|. .+.+.++|..+++. .+|.|.+-+. .. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 67777643 333333333333332 3344 36788888877753 3788764421 11 112 4
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+..+..+....++|||.-.+-.....+.+|+..||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55566665445799999999999999999999999998764
No 169
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=62.10 E-value=66 Score=32.74 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=63.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
.+++|+.+.+. ...++...++.+. .|.......+..+.+. ..|++++=.. .+.-|+.+++.+. ..+|||.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS----IADLFLLPSE-KESFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH----hcCEEEeCCC-cCCCccHHHHHHH--cCCCEEE
Confidence 55666655433 2344555554433 3443333333333333 2577665433 2344677777764 4588886
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
. .... ..+.+..|..+|+.+|-+.+++..++..++.
T Consensus 300 s-~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 S-NAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred e-CCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 4 3332 4566778899999999999999999887764
No 170
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.79 E-value=28 Score=35.45 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=43.2
Q ss_pred HHHHHHHHh-cCCCCcEEEEecC------CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 84 GFKLLELVG-LEMDLPVVMLSAY------SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 84 GleLLe~Lr-~~~diPVIvlTa~------~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+++++.++ ..+++|+|+||=. +-.....++.++|+++.|.-.+..+|....+..+..
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 466677776 5678999999833 344568888899999999977888877766665533
No 171
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.79 E-value=1.1e+02 Score=34.42 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=64.1
Q ss_pred ccEEEEEeCCHHH----HHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeC--------C------CCC
Q 009824 23 GMRVLAVDDDQTC----LKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDV--------Y------MPD 81 (524)
Q Consensus 23 ~irVLIVDDdp~~----~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi--------~------MPd 81 (524)
+..|+++|-..-. .+.++++=+.. +..|. .+.+.++|..+++. .+|.|.+-+ + .|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc
Confidence 4567777754321 12333332223 34454 36788888888763 388887642 1 123
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 82 mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..-+..+..+....++|||.=.+......+.+|+.+||+....
T Consensus 337 ~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 337 ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3345555555445679999999999999999999999999876
No 172
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=61.68 E-value=94 Score=32.22 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=63.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~di 97 (524)
.++++||.+-+. ...+++..+..+. .|... .+..+.+..+-. ..|++++=-.. +.=|+.+++.+. ..+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~~-Egf~~~~lEAma--~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSKF-EGFPMTLLEAMS--YGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCcc-cCcChHHHHHHH--cCC
Confidence 466777766543 3445555554432 34332 122222222111 14666642221 223667777764 357
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|||..-..+. ..+.+..|.++++..|-+.+++.+++..++...
T Consensus 283 Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 8875321333 335667889999999999999999999987654
No 173
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.97 E-value=73 Score=34.82 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=54.3
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CC-CCCHHHHH-HHHh-cC
Q 009824 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MP-DMDGFKLL-ELVG-LE 94 (524)
Q Consensus 23 ~irVLIVDDdp~~---~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~--MP-dmdGleLL-e~Lr-~~ 94 (524)
+.+|.+|+-|+.- ...|..+-+..+..+..+.+..+....+... ..+|+||+|.- .+ +...++.+ +.++ ..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 5789999988742 3345555555677777677777766666654 35899999973 12 11233333 3334 22
Q ss_pred -CCCcEEEEecCCCHHHHHHHH
Q 009824 95 -MDLPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 95 -~diPVIvlTa~~d~~~~~~al 115 (524)
+.-.++++++........+++
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred CCCeEEEEEECCCCHHHHHHHH
Confidence 223367777776655554443
No 174
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.12 E-value=1.1e+02 Score=33.73 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=54.7
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCC-CCCHHHHHH-HHhc--
Q 009824 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV--YMP-DMDGFKLLE-LVGL-- 93 (524)
Q Consensus 23 ~irVLIVDDdp~~---~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi--~MP-dmdGleLLe-~Lr~-- 93 (524)
+.+|++++-|+.- ...++.+.+..+..+..+.+..++.+.+.. ..+|+||+|. .++ +.+-++-+. .++.
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~ 329 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCFG 329 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhc
Confidence 4578888888622 223444444456666655556667776654 3599999997 222 112222222 2221
Q ss_pred --CCCCcEEEEecCCCHHHHHHHHh----cCCcEEE
Q 009824 94 --EMDLPVVMLSAYSDTKLVMKGIN----HGACDYL 123 (524)
Q Consensus 94 --~~diPVIvlTa~~d~~~~~~al~----~GA~dYL 123 (524)
.+.-.++++++........++++ .|.+..|
T Consensus 330 ~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 330 EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 12345777887777655555543 4555544
No 175
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=60.02 E-value=1.6e+02 Score=31.58 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=67.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEE--CCHHHHHHHHHhcCCCceEEEEeCCC-C--CCC--HHHHHHHHhc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVT--NRAITALKMLRENRNNFDLVISDVYM-P--DMD--GFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~M-P--dmd--GleLLe~Lr~ 93 (524)
.+++.||.|-+. ...++.++++.|. .|... -+.++..+.+.. .|+.++=... + +.+ |..+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 356777776654 4556666666553 24332 234555555542 5777764322 1 123 456777764
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+|||. |.... ..+.+..|.++++..|-+.++|..++..++.
T Consensus 327 -~G~PVI~-t~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 -VGIPVVS-TLHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred -CCCCEEE-eCCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3578875 33333 4456778999999999999999999998875
No 176
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=59.67 E-value=1.9e+02 Score=29.35 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=58.8
Q ss_pred cEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EE-C-CHHHHHHHHHhcCCCceEEEEeCCCCCCC---------HHHHHHH
Q 009824 24 MRVLAVDDDQ-TCLKILEKFLRECQYEVT-VT-N-RAITALKMLRENRNNFDLVISDVYMPDMD---------GFKLLEL 90 (524)
Q Consensus 24 irVLIVDDdp-~~~~~L~~~L~~~gy~V~-~a-~-sg~eALe~L~e~~~~pDLVIlDi~MPdmd---------GleLLe~ 90 (524)
..-+++-|.| .....+...+++.|.... .+ . +..+-++.+.+....+..++. . + +.. -.+.++.
T Consensus 116 vdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~~ 192 (256)
T TIGR00262 116 VDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVKR 192 (256)
T ss_pred CCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHHH
Confidence 3444444444 344455555666776643 22 2 223444444444333555544 2 2 322 3455666
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 91 Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
++...+.||++=.+-.+.+.+.++.++||+.+++-.
T Consensus 193 lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 193 LKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 666667898776666678999999999999999853
No 177
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=59.63 E-value=64 Score=30.54 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=51.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC--QYEVTVTNR-------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~--gy~V~~a~s-------g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~ 93 (524)
+.+|.++...+.+.+.+.+.|++. +.+++.+.+ ..+.++.+.+. .||+|++-+-+|...- ++...+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE~--~~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQEL--WIARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHHH--HHHHHHH
Confidence 578999999999999999888764 556554321 23345666654 4999999999997663 3344443
Q ss_pred CCCCcEEEEe
Q 009824 94 EMDLPVVMLS 103 (524)
Q Consensus 94 ~~diPVIvlT 103 (524)
..+.+|++-.
T Consensus 122 ~l~~~v~~~v 131 (171)
T cd06533 122 RLPVPVAIGV 131 (171)
T ss_pred HCCCCEEEEe
Confidence 3355666543
No 178
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=59.63 E-value=1.1e+02 Score=33.41 Aligned_cols=100 Identities=12% Similarity=0.147 Sum_probs=60.9
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------C--CC
Q 009824 22 IGMRVLAVDDDQ----TCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP---------D--MD 83 (524)
Q Consensus 22 ~~irVLIVDDdp----~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP---------d--md 83 (524)
.+..|++||--. ...+.++.+=+.. +..|. -+.+.++|..+++. ..|.|.+-+--- + ..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 356678877532 2222333322222 23343 46788888888763 378887644210 0 11
Q ss_pred HHHHH---HHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLL---ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLL---e~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-+..+ ..+.....+|||.=.+......+.+|+.+||+....
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 23333 333234579999999999999999999999999876
No 179
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=59.48 E-value=72 Score=30.51 Aligned_cols=75 Identities=7% Similarity=-0.072 Sum_probs=53.9
Q ss_pred hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 009824 45 ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (524)
Q Consensus 45 ~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dY 122 (524)
..+..+. .+.+.+|+.++++. .+|.|-++- .+.. |.++++.++. .+++|++.+.+- +.+.+.+.++.||+..
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v 168 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAV 168 (190)
T ss_pred HcCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEE
Confidence 3344433 56688998888753 389988853 3333 8999988864 456888877666 7889999999998877
Q ss_pred EeC
Q 009824 123 LLK 125 (524)
Q Consensus 123 L~K 125 (524)
..-
T Consensus 169 ~v~ 171 (190)
T cd00452 169 GGG 171 (190)
T ss_pred EEc
Confidence 653
No 180
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=59.45 E-value=1.8e+02 Score=31.33 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=57.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-HHhcCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~-V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe-~Lr~~~diPVI 100 (524)
-+|+.+|=++...+.++.-++..+.+ +. ...++... +......+|+|++|- ++. ...++. .++.-.+-.++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~---l~~~~~~fDvIdlDP--fGs-~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV---LRYRNRKFHVIDIDP--FGT-PAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH---HHHhCCCCCEEEeCC--CCC-cHHHHHHHHHhcccCCEE
Confidence 46999999999999999988766543 32 33344444 333223599999986 443 235554 33444445688
Q ss_pred EEecCCCHHH----HHHHH-hcCCcE
Q 009824 101 MLSAYSDTKL----VMKGI-NHGACD 121 (524)
Q Consensus 101 vlTa~~d~~~----~~~al-~~GA~d 121 (524)
.+|+.+.... ...++ ++|+.-
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~~ 169 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGANP 169 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCcc
Confidence 8887655442 44555 667654
No 181
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=58.74 E-value=78 Score=27.06 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=54.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIv 101 (524)
++|++||.++...+.+ +..|+.+.... .-.+.++.+.- ...+.||+...- +..-+.++..++. .+..+||+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGI--EKADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCc--cccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 6799999998774333 34467765432 22444554433 347888887642 2234445556654 67788876
Q ss_pred EecCCCHHHHHHHHhcCCcEEEe
Q 009824 102 LSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.... ..........||+..+.
T Consensus 95 ~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 95 RVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp EESS--HHHHHHHHHTT-SEEEE
T ss_pred EECC--HHHHHHHHHCCcCEEEC
Confidence 6554 44555666789987664
No 182
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=58.72 E-value=1e+02 Score=30.92 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCceE-EEEeCCCCC-CCH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC-CcEEEe------C
Q 009824 57 ITALKMLRENRNNFDL-VISDVYMPD-MDG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG-ACDYLL------K 125 (524)
Q Consensus 57 ~eALe~L~e~~~~pDL-VIlDi~MPd-mdG--leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~G-A~dYL~------K 125 (524)
.+..+.+.+. .+|. ++.|+.--+ +.| +++++.++...++|||...+..+.+.+.++++.| |+..+. +
T Consensus 158 ~~~~~~l~~~--G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEKL--GAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHHc--CCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 3444455433 3664 444432211 122 5777877766789999999999999999999988 888544 2
Q ss_pred CCCHHHHHHHHH
Q 009824 126 PVRMEELKNTWQ 137 (524)
Q Consensus 126 P~~~eeL~~aI~ 137 (524)
-++.++++..+.
T Consensus 236 ~~~~~~~~~~~~ 247 (254)
T TIGR00735 236 EITIGEVKEYLA 247 (254)
T ss_pred CCCHHHHHHHHH
Confidence 355555544443
No 183
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=58.56 E-value=12 Score=36.20 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=35.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|||||.+...-..|..+|++.|+++......+..++.+... .||.||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999999888765443333333322 3887776
No 184
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=58.42 E-value=40 Score=32.32 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=44.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE-eCC-CCCCCH--HHHHHHHhcCCCCcEEE
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS-DVY-MPDMDG--FKLLELVGLEMDLPVVM 101 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl-Di~-MPdmdG--leLLe~Lr~~~diPVIv 101 (524)
|||||.....-..+.++|++.|+++.........++.+... .||.||+ .=- -|..++ .++++.. ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 89999999999999999999999887655322112333322 3886555 111 122223 2344433 34678875
Q ss_pred Ee
Q 009824 102 LS 103 (524)
Q Consensus 102 lT 103 (524)
+.
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 53
No 185
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=58.40 E-value=32 Score=35.24 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCCCcEEEEecC------CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 84 GFKLLELVGLEMDLPVVMLSAY------SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~------~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
.+++++.+|...++|+|+||=. +-.....++.++|+++.+.--+..+|....++.+
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 4667777776688999988854 3345688889999999999878777766555554
No 186
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.74 E-value=66 Score=30.44 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=51.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC--QYEVTVTNR-------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~--gy~V~~a~s-------g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~ 93 (524)
+.+|.++...+.+.+.+...|++. +..++.+.+ .++.++.+... .+|+|++-+-+|...- ++...+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE~--~~~~~~~ 123 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQER--WIARHRQ 123 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHHH--HHHHHHH
Confidence 478999999999999999988764 556664433 34455555544 4999999998886553 3444444
Q ss_pred CCCCcEEEEe
Q 009824 94 EMDLPVVMLS 103 (524)
Q Consensus 94 ~~diPVIvlT 103 (524)
.-..+|++-.
T Consensus 124 ~l~~~v~i~v 133 (172)
T PF03808_consen 124 RLPAGVIIGV 133 (172)
T ss_pred HCCCCEEEEE
Confidence 4445544443
No 187
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=57.39 E-value=1.2e+02 Score=31.80 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=57.8
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 009824 23 GMRVLAVDD----DQTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (524)
Q Consensus 23 ~irVLIVDD----dp~~~~~L~~~L~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (524)
+..+++||- .+...+.++.+=+... ..|. .+.+.+.|..+++. ..|.|.+.+ -|+ ..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCCC
Confidence 466777763 2333344443333322 3443 35667777777653 378887632 111 11
Q ss_pred HHHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLLe~L---r~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-+.++..+ ....++|||.--+-.+...+.+++.+||+....
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 22333322 223368999777888899999999999999876
No 188
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=57.14 E-value=75 Score=39.36 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=70.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHH-HHHHHh-c
Q 009824 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMP-DMDGFK-LLELVG-L 93 (524)
Q Consensus 24 irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVIlDi~MP-dmdGle-LLe~Lr-~ 93 (524)
-+|++. |-|..=..++..+|+..||+|+-.. ..++.++.+++.+ +|+|-+-..|. .+..++ +++.++ .
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 467776 6777777788888999999998543 4678888887765 99999887775 455543 566774 4
Q ss_pred CCCCcEEEEecCCCHHHHHHHH---hcCCcEEEeCCC
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGI---NHGACDYLLKPV 127 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al---~~GA~dYL~KP~ 127 (524)
..++||++=-+..+.+.+..-+ ..||+.|-.-.+
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 4578887766665555554322 238888876433
No 189
>PRK07695 transcriptional regulator TenI; Provisional
Probab=57.10 E-value=62 Score=31.16 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=48.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
.+.+.+++.++.+ ...|.|++....|. ..|++.++.+....++|||.+-+- +.+.+.++++.|++.+.
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIA 175 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 5567777665543 24888887654332 236788887765567999988777 78889999999998873
No 190
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.09 E-value=41 Score=34.17 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=43.0
Q ss_pred CHHHHHHHHhcC-CCCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 83 DGFKLLELVGLE-MDLPVVMLSAYSD------TKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 83 dGleLLe~Lr~~-~diPVIvlTa~~d------~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
+.+++++.++.. .++|+++|+-... ...+.++.++|++..+.-....++....+..+.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 356667777655 7899888876654 567888889999999998787777766555543
No 191
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=56.95 E-value=34 Score=32.66 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=58.0
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 26 VLAVDDDQTCLKILEKFLRE----CQ--YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~----~g--y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
|||=|.+-...-.+...++. .+ ..|. .+.+.+++.++++.. +|+|.+|-.-| .+=-++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g---~d~I~lD~~~~-~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAG---ADIIMLDNMSP-EDLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT----SEEEEES-CH-HHHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhC---CCEEEecCcCH-HHHHHHHHHHhhcCCcE
Confidence 56655555544444554432 22 2233 788999999998743 89999997654 11222334443333337
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.|.+++.-+.+.+.+..+.|++.+-+
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 78889988889999999999877643
No 192
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=56.29 E-value=97 Score=32.16 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=63.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCCe--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--CC
Q 009824 25 RVLAVDDDQTCLKILEKFLRE----CQYE--VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EM 95 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~----~gy~--V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~ 95 (524)
-|||=|.|-...-.++..+++ .+|. |. .+.+.+++.+++... +|+|++|-+-| -++-+.++. ..
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLDNm~~----e~~~~av~~l~~~ 232 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLDNMSP----EELKEAVKLLGLA 232 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEecCCCH----HHHHHHHHHhccC
Confidence 377777777666667777754 3542 33 678999999998753 89999996444 233333322 33
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.-.++=.|+.-+.+.+.+....|++.+-+
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tGVD~IS~ 261 (280)
T COG0157 233 GRALLEASGGITLENIREYAETGVDVISV 261 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcCCCEEEe
Confidence 44566788888999998888999876543
No 193
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=55.73 E-value=63 Score=32.15 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdm-dG--leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..+.++.+... .-.++++|+..-++ .| +++++.+.....+|||+-.+-.+.+.+.++++.||...+.
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45556665543 12599999977543 33 5677777666789999999999999999999999999876
No 194
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=55.51 E-value=42 Score=36.32 Aligned_cols=65 Identities=31% Similarity=0.399 Sum_probs=49.4
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHH--HHHHhC------CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC
Q 009824 17 IDKFPIGMRVLAVDDDQTCLKILE--KFLREC------QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83 (524)
Q Consensus 17 ~~~~p~~irVLIVDDdp~~~~~L~--~~L~~~------gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmd 83 (524)
+-++|.-..|-.||=||.+.+.-+ ..|+.. +-+|..+. ++|..+++...+.+|.||+|+--|+..
T Consensus 307 llkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 307 LLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTP 379 (508)
T ss_pred HHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCc
Confidence 457887889999999999999888 566653 23555443 467788887777899999999877654
No 195
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=55.41 E-value=1e+02 Score=31.88 Aligned_cols=99 Identities=16% Similarity=0.296 Sum_probs=59.5
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------HHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 25 RVLAV--DDDQTCL---KILEKFLRECQYEVTVTNRAITALKM-------LRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 25 rVLIV--DDdp~~~---~~L~~~L~~~gy~V~~a~sg~eALe~-------L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
+|+|+ .+.+... ..+..+|++.++++.........+.. .......+|+||+ -|.||. +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 37776 3334444 45556677788887754432221110 0111124788877 488885 444443
Q ss_pred --cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 93 --LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 93 --~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
...++||+=+. .|=.+||. .+..+++...+..++++
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 23578887553 46668888 78889999999988765
No 196
>PLN02591 tryptophan synthase
Probab=55.17 E-value=2.3e+02 Score=28.89 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=62.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE-EE-CCH-HHHHHHHHhcCCCceEEEEeCCCCCC--------C-HHHHHHHHhc
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVT-VT-NRA-ITALKMLRENRNNFDLVISDVYMPDM--------D-GFKLLELVGL 93 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~-~a-~sg-~eALe~L~e~~~~pDLVIlDi~MPdm--------d-GleLLe~Lr~ 93 (524)
|+|.|-...-...+...+++.|...+ .+ .+. ++=++.+.+.. .+.|-+ +-+.+. . -.++++.+|.
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~-Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYL-VSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEE-eeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 56666666666677777777777655 33 222 33344444433 233211 111221 1 2345677777
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
..++||++=.+-.+.+.+.++.+.||++.++-.
T Consensus 187 ~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 789999998888899999999999999999864
No 197
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=54.91 E-value=1e+02 Score=32.31 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~a 135 (524)
.++..+.+.. .|+.++ ...|..-|+.+++.+. ..+|||. |.... ..+.+..|.++++..|.+.++|..+
T Consensus 291 ~~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA--~G~PVIa-s~~~g---~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 291 YDQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA--CGCLVVG-SDTAP---VREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred HHHHHHHHHh----CcEEEE-cCcccccchHHHHHHH--CCCCEEE-cCCCC---chhhcccCCceEEcCCCCHHHHHHH
Confidence 3455555542 455554 2235555667777763 4578875 33332 4456677899999999999999999
Q ss_pred HHHHHHh
Q 009824 136 WQHVIRR 142 (524)
Q Consensus 136 I~~vlr~ 142 (524)
+..++..
T Consensus 360 i~~ll~~ 366 (396)
T cd03818 360 VIELLDD 366 (396)
T ss_pred HHHHHhC
Confidence 9988753
No 198
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=54.76 E-value=44 Score=30.90 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=43.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEEeCCCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAI-TALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~-eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
.+-+|+|+.......+-|..+|.+.|..|+.+.+-. +..+.++ ..|+|++-.--|.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----hCCEEEEecCCCC
Confidence 467899999999999999999999999999887221 2222332 2799999887664
No 199
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=54.57 E-value=45 Score=33.36 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=43.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHh-cCCCceEEEEeCCCCC
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRE-NRNNFDLVISDVYMPD 81 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~~a~sg~eALe~L~e-~~~~pDLVIlDi~MPd 81 (524)
.+|..-+|.-||-++...+.-++.+++.|+. |..... -++++.+.. ....||+||+|..-+.
T Consensus 80 ~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~ 144 (219)
T COG4122 80 ALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKAD 144 (219)
T ss_pred hCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhh
Confidence 3454558999999999999999999998763 443331 344444443 2356999999986543
No 200
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=54.49 E-value=1.5e+02 Score=29.71 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc-CCcEEEe------
Q 009824 57 ITALKMLRENRNNFD-LVISDVY----MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH-GACDYLL------ 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~----MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~-GA~dYL~------ 124 (524)
.+..+.+.+. .++ +++.|+. +.+- -+++++.+....++|||.--+..+.+.+.++++. ||++.+.
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGY-DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 4444544433 355 6675643 2222 3677777766668999999999999999999975 9988876
Q ss_pred CCCCHHHHHHHH
Q 009824 125 KPVRMEELKNTW 136 (524)
Q Consensus 125 KP~~~eeL~~aI 136 (524)
.-++.++++..+
T Consensus 233 ~~~~~~~~~~~~ 244 (253)
T PRK02083 233 GEITIGELKAYL 244 (253)
T ss_pred CCCCHHHHHHHH
Confidence 235555555444
No 201
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=54.49 E-value=53 Score=34.12 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=48.4
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 51 ~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.+.+.+++.++++. .+|+|++|- |+-.+=-+.++.++....-.+|-.|+.-+.+.+.+....|++.+..
T Consensus 194 VEv~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 194 VEADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred EECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 367899999999864 389999994 4332333334444322223467788899999999999999887654
No 202
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=54.02 E-value=1.6e+02 Score=29.00 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=60.1
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeC------CCCCCCHHHHHHHH
Q 009824 24 MRVLAVDDDQ----TCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDV------YMPDMDGFKLLELV 91 (524)
Q Consensus 24 irVLIVDDdp----~~~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi------~MPdmdGleLLe~L 91 (524)
..|+-+|-.. .....+-..+++. |... -+++.+|++...+. .+|+|=.=+ ...+...++|++.+
T Consensus 65 adIIAlDaT~R~Rp~~l~~li~~i~~~-~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l 140 (192)
T PF04131_consen 65 ADIIALDATDRPRPETLEELIREIKEK-YQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVREL 140 (192)
T ss_dssp -SEEEEE-SSSS-SS-HHHHHHHHHHC-TSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHH
T ss_pred CCEEEEecCCCCCCcCHHHHHHHHHHh-CcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHH
Confidence 3466666432 2233333444443 3444 46789999988764 389886543 22234578899888
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 92 r~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
... .+|||.=-....++.+.+++++||+..++=
T Consensus 141 ~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 141 VQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 654 899998888999999999999999999874
No 203
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.89 E-value=71 Score=32.97 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=58.0
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC--eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh---c-C
Q 009824 26 VLAVDDDQTCLKILEKFLRE----CQY--EV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG---L-E 94 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~----~gy--~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr---~-~ 94 (524)
|||=|.|-.....+...+++ ..+ .| +.+.+.+||++++.. .+|+|.+|-. +--++.+.++ . .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~----~~e~l~~~v~~~~~~~ 227 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNM----SVEEIKEVVAYRNANY 227 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhhccC
Confidence 56655554444445555432 342 23 378899999999864 3899998752 2222222222 2 2
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+++ .|..++.-+.+.+.+..+.|++.+.+
T Consensus 228 ~~~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 228 PHV-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCe-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 333 56778888999999999999988764
No 204
>PRK14098 glycogen synthase; Provisional
Probab=53.78 E-value=1.6e+02 Score=32.70 Aligned_cols=112 Identities=8% Similarity=0.053 Sum_probs=60.7
Q ss_pred cEEEEEeCCH-HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 24 MRVLAVDDDQ-TCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp-~~~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
++++|+.+-+ .....++++.++.+-+|. ...+..++.+.+. ..|++++=-. -+.-|+..++.++ ..+|+|
T Consensus 337 ~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a----~aDi~l~PS~-~E~~Gl~~lEAma--~G~ppV 409 (489)
T PRK14098 337 IQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA----GLDMLLMPGK-IESCGMLQMFAMS--YGTIPV 409 (489)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH----hCCEEEeCCC-CCCchHHHHHHHh--CCCCeE
Confidence 5666666533 234555555554433333 2233333344443 2577663221 1234666665553 345665
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+....+-.+.+.+....+.++|+..|.+.++|..++.+++..
T Consensus 410 v~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 410 AYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred EecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 543333333333333347789999999999999999987654
No 205
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=53.76 E-value=1e+02 Score=30.04 Aligned_cols=100 Identities=25% Similarity=0.343 Sum_probs=53.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC-------------eEEEECCHHHHHHHHHhcC-CCceEEEEeCC-CCCCCHHHH
Q 009824 25 RVLAVDDDQTCLKILEKFLRE--CQY-------------EVTVTNRAITALKMLRENR-NNFDLVISDVY-MPDMDGFKL 87 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~--~gy-------------~V~~a~sg~eALe~L~e~~-~~pDLVIlDi~-MPdmdGleL 87 (524)
+-.||..-+.-++++++++.- .|+ .|..+.+.+++++.+++.. .+|-+|.+|.. -|+.-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 467888888888888888853 222 2678999999999987632 35889999998 345446655
Q ss_pred HHHHhcCCCCcEEEE--ecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 009824 88 LELVGLEMDLPVVML--SAYSDTKLVMKGINHGACDYLLKPVRM 129 (524)
Q Consensus 88 Le~Lr~~~diPVIvl--Ta~~d~~~~~~al~~GA~dYL~KP~~~ 129 (524)
++.+-...+-|++++ |+.+=.+.++ ..+||++.|+.-
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEccccc
Confidence 543322345566555 5555444443 357899999753
No 206
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=53.63 E-value=18 Score=34.70 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=34.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|||||.....-..|..+|+..|++|....+...-++.+... .||.||+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEE
Confidence 89999999999999999999999888665432222333332 3776665
No 207
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=53.54 E-value=10 Score=29.08 Aligned_cols=46 Identities=13% Similarity=0.367 Sum_probs=25.7
Q ss_pred HHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhh
Q 009824 221 ILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRI 267 (524)
Q Consensus 221 IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~ 267 (524)
||+++. .|.+..||+-.+.+...|+..+...++.+|+ .+...++.+
T Consensus 11 vl~~l~-~G~~~~eIA~~l~is~~tV~~~~~~i~~Kl~~~~~~~l~~~ 57 (58)
T PF00196_consen 11 VLRLLA-QGMSNKEIAEELGISEKTVKSHRRRIMKKLGVKNRAELIAL 57 (58)
T ss_dssp HHHHHH-TTS-HHHHHHHHTSHHHHHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred HHHHHH-hcCCcchhHHhcCcchhhHHHHHHHHHHHhCCCCHHHHHhh
Confidence 444444 6666666666665565555556666666776 344455544
No 208
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=53.47 E-value=50 Score=31.54 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecC
Q 009824 41 KFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAY 105 (524)
Q Consensus 41 ~~L~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdG-------leLLe~Lr~-----~~diPVIvlTa~ 105 (524)
+.++..+..+.. ..+..+.++.+.. .+|.|+++-.-|+..| ++.++.++. .+.+||++..+-
T Consensus 98 ~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI 174 (210)
T TIGR01163 98 QLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGV 174 (210)
T ss_pred HHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCc
Confidence 444445554332 2234555555432 2677777665555444 333333321 123676555555
Q ss_pred CCHHHHHHHHhcCCcEEEeC
Q 009824 106 SDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 106 ~d~~~~~~al~~GA~dYL~K 125 (524)
..+.+.++++.||+.+++-
T Consensus 175 -~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 175 -NDDNARELAEAGADILVAG 193 (210)
T ss_pred -CHHHHHHHHHcCCCEEEEC
Confidence 5688889899999988764
No 209
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=53.22 E-value=2.2e+02 Score=29.19 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEE------EeCCCCHHHHHHHHHHHHHh
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY------LLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dY------L~KP~~~eeL~~aI~~vlr~ 142 (524)
+++++.++...++|||...+-.+.+.+.+.+.+||+.. +..|.-..++..-+...+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56777776666899999999999999999999998654 22454444455544444443
No 210
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=53.04 E-value=1.7e+02 Score=29.29 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=62.0
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCC
Q 009824 23 GMRVLAVDDDQT---CLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 23 ~irVLIVDDdp~---~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~di 97 (524)
.++++||.+.+. ....+...+++.+. .|.......+..+.+.. .|++|+=..-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 356666654432 22333344444332 24433333333444432 56666533234455677777764 357
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
|||+. .... ..+.+..|.++++.++-+.+++..++..++.
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 88754 3333 3455667779999999999999999975543
No 211
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=52.98 E-value=1e+02 Score=33.51 Aligned_cols=106 Identities=13% Similarity=0.257 Sum_probs=63.3
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEEC-----------------------CHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 009824 30 DDDQTCLKILEKFLRECQYE----VTVTN-----------------------RAITALKMLRENRNNFDLVISDVYMPDM 82 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~----V~~a~-----------------------sg~eALe~L~e~~~~pDLVIlDi~MPdm 82 (524)
+++....+.+++.+++.||+ |..+- +..+++++++....+++++.+.==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 66778888889989877664 33222 3377877666532347787776555544
Q ss_pred CHHHHHHHHhcCC--CCcEEEEecC---CCHHHHHHHHhcCCcEE-EeCCCCH---HHHHHHHHH
Q 009824 83 DGFKLLELVGLEM--DLPVVMLSAY---SDTKLVMKGINHGACDY-LLKPVRM---EELKNTWQH 138 (524)
Q Consensus 83 dGleLLe~Lr~~~--diPVIvlTa~---~d~~~~~~al~~GA~dY-L~KP~~~---eeL~~aI~~ 138 (524)
| ++-.+.|+... .+|| +... .+.....++++.|++++ +.||-.. .+.+.+++.
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~l 351 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKL 351 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHH
Confidence 4 34344444332 4554 3333 35788889998887655 5688664 444444433
No 212
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=52.77 E-value=40 Score=35.13 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=48.3
Q ss_pred CHHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHhcc
Q 009824 83 DGFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 83 dGleLLe~Lr~~~diPVI--vlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~~~ 144 (524)
-++++++.+.....+||| ...+-..++.+..++++||+.+++ |.-++.+....+..++..+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 478888888666679998 677777999999999999999865 44477777777777776653
No 213
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=52.54 E-value=64 Score=30.56 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=49.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDM-------DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 51 ~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm-------dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
..+.+.+++.++.+. .+|.|++--.-|.. -|++.++++.....+||+.+-+-+ .+.+.++.+.||+++-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 378899997666542 38999988765533 388888888666679999998874 5567788899999864
Q ss_pred e
Q 009824 124 L 124 (524)
Q Consensus 124 ~ 124 (524)
.
T Consensus 176 v 176 (180)
T PF02581_consen 176 V 176 (180)
T ss_dssp E
T ss_pred E
Confidence 3
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.96 E-value=1.8e+02 Score=32.17 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=35.8
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEeC
Q 009824 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENR--NNFDLVISDV 77 (524)
Q Consensus 23 ~irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~--~~pDLVIlDi 77 (524)
+.+|.+++-|+. ..+.++.+-+..++.+..+.+..+..+.+.... ..+|+||+|.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 457888888765 334455555556888877777665555554322 2489999997
No 215
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.25 E-value=1.9e+02 Score=31.72 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=54.8
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHHh-----
Q 009824 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENR--NNFDLVISDVYMPDMDGFKLLELVG----- 92 (524)
Q Consensus 23 ~irVLIVDDdp~~---~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~--~~pDLVIlDi~MPdmdGleLLe~Lr----- 92 (524)
+.+|.+|+-|+.- .+.++.+-+..+..+..+.+..+..+.+.... ..+|+||+|.-=-.-..-+.++.++
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 4678888888642 34555555566777766777766655554321 3589999998311111122333221
Q ss_pred cCCCCcEEEEecCCCHHHHHHHH----hcCCcEEE
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGI----NHGACDYL 123 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al----~~GA~dYL 123 (524)
..++.-++++++........+.+ ..+.+.+|
T Consensus 314 ~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI 348 (407)
T PRK12726 314 VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFI 348 (407)
T ss_pred cCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEE
Confidence 23344455666555544444443 24455544
No 216
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=51.01 E-value=84 Score=32.29 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=47.4
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF-KLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 51 ~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl-eLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.+.+.+++.++++. ..|.|.+|-.-|. ++ ++++.++.. +++|+++. +--+.+.+.+..+.||+.+..
T Consensus 188 Vev~t~eea~~A~~~---gaD~I~ld~~~p~--~l~~~~~~~~~~~~~i~i~As-GGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAEA---GADILQLDKFSPE--ELAELVPKLRSLAPPVLLAAA-GGINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHhccCCCceEEEE-CCCCHHHHHHHHHcCCcEEEE
Confidence 477889999888753 4899999965553 33 234445433 46776655 455778899999999998854
No 217
>PRK04302 triosephosphate isomerase; Provisional
Probab=50.75 E-value=2.5e+02 Score=27.51 Aligned_cols=79 Identities=19% Similarity=0.088 Sum_probs=49.0
Q ss_pred HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC--CC---C-----CCH-HHHHHHHhc-CCCCcEEEEecCCCHHH
Q 009824 44 RECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY--MP---D-----MDG-FKLLELVGL-EMDLPVVMLSAYSDTKL 110 (524)
Q Consensus 44 ~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~--MP---d-----mdG-leLLe~Lr~-~~diPVIvlTa~~d~~~ 110 (524)
.+.|..+. ++.+.+++.. +.+. .+|+|-..-. +. + ..+ .++++.++. ..++|||.-.+-.+.+.
T Consensus 111 ~~~Gl~~I~~v~~~~~~~~-~~~~--~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~ 187 (223)
T PRK04302 111 KKLGLESVVCVNNPETSAA-AAAL--GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED 187 (223)
T ss_pred HHCCCeEEEEcCCHHHHHH-HhcC--CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH
Confidence 34688766 4455555544 3332 3676653211 10 1 112 234455654 34789999999999999
Q ss_pred HHHHHhcCCcEEEeC
Q 009824 111 VMKGINHGACDYLLK 125 (524)
Q Consensus 111 ~~~al~~GA~dYL~K 125 (524)
+.++++.||+++++=
T Consensus 188 ~~~~~~~gadGvlVG 202 (223)
T PRK04302 188 VKAALELGADGVLLA 202 (223)
T ss_pred HHHHHcCCCCEEEEe
Confidence 999999999999874
No 218
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=50.57 E-value=75 Score=30.62 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=34.5
Q ss_pred ceEEEEeCCCCCCCHH-------HHHHHHhcC---CCC-cEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 70 FDLVISDVYMPDMDGF-------KLLELVGLE---MDL-PVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 70 pDLVIlDi~MPdmdGl-------eLLe~Lr~~---~di-PVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+|.|+++-.-|+.+|- +.++.++.. ..+ ++|++.+--+.+.+.++++.|++.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 6777777655665442 333333221 122 5566666666788888889999987654
No 219
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=50.53 E-value=96 Score=31.74 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=60.0
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH-HHHHHhcCCC
Q 009824 25 RVLAVDDDQTCLKILEKFL----RECQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK-LLELVGLEMD 96 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L----~~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGle-LLe~Lr~~~d 96 (524)
.|||-|.|-...-.+...+ +..+ ..+ +.+.+.+++.+.+.. .+|.|.+|-.-| +.++ +++.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccCCC
Confidence 4777777755543333222 2233 233 477899999998763 389999987655 2222 2334433345
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+| |+.++--+.+.+.+..+.||+.+-+
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 65 5566777788999999999988754
No 220
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=50.40 E-value=78 Score=31.51 Aligned_cols=59 Identities=24% Similarity=0.459 Sum_probs=44.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN--RNNFDLVISDVY 78 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~-~a~sg~eALe~L~e~--~~~pDLVIlDi~ 78 (524)
.+..-+|.-+|=++...+..++.++..|+. |. ...++.+.+..+... ...||+|++|..
T Consensus 90 ~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 90 LPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 344568999999999999999999988763 44 456777777766432 246999999975
No 221
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=50.40 E-value=1.2e+02 Score=37.84 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=68.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCC-CCCHH-HHHHHHh-c
Q 009824 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMP-DMDGF-KLLELVG-L 93 (524)
Q Consensus 24 irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVIlDi~MP-dmdGl-eLLe~Lr-~ 93 (524)
-+||+. |-|..=..++..+|+..||+|+... ..++.++.+.+.+ +|+|.+-..|. .+..+ ++++.++ .
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 467777 7777777888888999999998543 4677888887765 99999887775 45444 4567774 4
Q ss_pred CCCCcEEEEecCCCHHH-HHHH-Hhc-CCcEEEeCC
Q 009824 94 EMDLPVVMLSAYSDTKL-VMKG-INH-GACDYLLKP 126 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~-~~~a-l~~-GA~dYL~KP 126 (524)
..++||++=-+..+... +.+. -.+ ||+.|..-.
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 46788877665555433 2221 123 888887643
No 222
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.33 E-value=1.6e+02 Score=30.57 Aligned_cols=104 Identities=23% Similarity=0.284 Sum_probs=60.5
Q ss_pred CCccEEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHhcCCCceEEEEeCCCCCCCHHHHH
Q 009824 21 PIGMRVLAV--DDDQT---CLKILEKFLRECQYEVTVTNRAITALK-----M--LRENRNNFDLVISDVYMPDMDGFKLL 88 (524)
Q Consensus 21 p~~irVLIV--DDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe-----~--L~e~~~~pDLVIlDi~MPdmdGleLL 88 (524)
|...+|.|| .+.+. ..+.+.++|++.++++.......+.+. . .......+|+||+ -|.||. ++
T Consensus 2 ~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l 76 (295)
T PRK01231 2 PSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LL 76 (295)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HH
Confidence 333357777 33333 344566667778888876443222111 0 0111123777776 378884 33
Q ss_pred HHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 89 ELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 89 e~Lr--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+ ...++||+-+.. |=.+||. .+..+++..+++.++++.
T Consensus 77 ~~~~~~~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 77 GAARALARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHHHHhcCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 3332 245789886643 5567774 688899999999987653
No 223
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=50.29 E-value=2.6e+02 Score=28.37 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=37.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC----CCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY----SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~----~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
.|++++.. + +..+++.+. ..+|||++... .......+.+..+-.+++..+- +.++|..++..++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam~--~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA--LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH--hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 46666521 2 455556553 46898876422 2222222333334467888774 89999999988764
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=50.00 E-value=2.1e+02 Score=30.32 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=51.7
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECCH-------HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH---
Q 009824 23 GMRVLAVDDDQ---TCLKILEKFLRECQYEVTVTNRA-------ITALKMLRENRNNFDLVISDVYMPDMDGFKLLE--- 89 (524)
Q Consensus 23 ~irVLIVDDdp---~~~~~L~~~L~~~gy~V~~a~sg-------~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe--- 89 (524)
+.+|++++-|. ...+.++.+.+..|..+.....+ .++++.... ..+|+||+|..=-.-.-..++.
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTaGr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTAGRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCccCCcHHHHHHHH
Confidence 46788888773 34445566666667666533221 234444433 2489999998411111223333
Q ss_pred HH-h-cCCCCcEEEEecCCCHHHHHH--HH--hcCCcEEEe
Q 009824 90 LV-G-LEMDLPVVMLSAYSDTKLVMK--GI--NHGACDYLL 124 (524)
Q Consensus 90 ~L-r-~~~diPVIvlTa~~d~~~~~~--al--~~GA~dYL~ 124 (524)
.+ + ..++.-++++.+....+.... .+ ..|++.++.
T Consensus 246 ~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 246 KIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 22 2 246666666666554433322 22 256666544
No 225
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=49.92 E-value=1.2e+02 Score=30.95 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=65.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
++++||.+.+... .++..+ .....+.-.-+.++..+++.. .|++++-.. +.-|+.+++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 6778888776432 333311 112222233455666666653 577776544 444666777664 357998754
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
. +. ..+.+..|..+++..|-+.++|..++..++..
T Consensus 292 ~-~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 292 K-GG---ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred C-CC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 3 22 23445677889999999999999999888764
No 226
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=49.88 E-value=32 Score=35.10 Aligned_cols=80 Identities=25% Similarity=0.249 Sum_probs=49.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----------
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN-------RAITALKMLRENRNNFDLVISDVYMPDMDGF----------- 85 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl----------- 85 (524)
|||||+...-.+...|...|+..|++|.... +.++..+.+.+.+ ||+||-=.-+.+.+..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999998898888663 4555556666554 9988764433322211
Q ss_pred ----HHHHHHhcCCCCcEEEEecC
Q 009824 86 ----KLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 86 ----eLLe~Lr~~~diPVIvlTa~ 105 (524)
..+...-....+++|.+|..
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 11111112357899999875
No 227
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.84 E-value=2e+02 Score=28.71 Aligned_cols=89 Identities=8% Similarity=-0.045 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HHHHHHHHHhcCCCceEEEEeCCCCCC------CHHHHHHHHhcC-CCCcEEEEec
Q 009824 35 CLKILEKFLRECQYEVTVTNR---AITALKMLRENRNNFDLVISDVYMPDM------DGFKLLELVGLE-MDLPVVMLSA 104 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s---g~eALe~L~e~~~~pDLVIlDi~MPdm------dGleLLe~Lr~~-~diPVIvlTa 104 (524)
....+...+++.|.++..+-+ ..+.++.+.... ..++++ -.+|+. +-.+.+++++.. .+.||++=.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 344556666777887664322 234444433322 456666 556653 113344555543 3567765556
Q ss_pred CCCHHHHHHHHhcCCcEEEeCC
Q 009824 105 YSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~dYL~KP 126 (524)
-.+.+.+.+++++||+.++.=.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 6688889998999999999853
No 228
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=49.83 E-value=14 Score=36.92 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=34.3
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhc
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDG 272 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~ig 272 (524)
+||+++. .|+|-+||+.++.+...|+.++...++.+|+ .+...++.+|...|
T Consensus 150 eVL~Lia-~G~SnkEIA~~L~IS~~TVk~hvs~I~~KLgv~sR~eLv~~A~~~g 202 (217)
T PRK13719 150 DVFILYS-FGFSHEYIAQLLNITVGSSKNKISEILKFFGISSRDELLIILHTSE 202 (217)
T ss_pred HHHHHHH-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 5666666 6777777777777777776667777777777 44555666664433
No 229
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=49.69 E-value=54 Score=32.96 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=44.0
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCC
Q 009824 24 MRVLAVDDDQ------TCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (524)
Q Consensus 24 irVLIVDDdp------~~~~~L~~~L~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~d 96 (524)
||||++-... .....+...|.+.|++|+... +.....+.+... .||+|.+-......-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH--cC
Confidence 6788876553 356667778888899887443 333344444433 599998755333333344443332 46
Q ss_pred CcEEEE
Q 009824 97 LPVVML 102 (524)
Q Consensus 97 iPVIvl 102 (524)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 777644
No 230
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=49.36 E-value=2.3e+02 Score=27.60 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+..+.+.+.. ++ +++.|+..-+. -.+++++.++...++|||.-.+-.+.+.+.++++.||++.+.
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555432 44 56677644322 236778878766689999999999999999999999999876
No 231
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=49.28 E-value=2.9e+02 Score=27.92 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=64.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEeCCC-C----CCCHHHHHHHHhc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYM-P----DMDGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~--sg~eALe~L~e~~~~pDLVIlDi~M-P----dmdGleLLe~Lr~ 93 (524)
.++++||.+.+.. ..++.+.++.+. .|.... ..++..+.+.. .|++++=... + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 4677777765533 345555555332 343322 23445555542 5676653221 1 123677777774
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+|||.-. ... ..+.+..|..+++.+|-+.+++..++..++.
T Consensus 293 -~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 -SGVPVVATR-HGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred -cCCCEEEeC-CCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 457888543 332 3445567788999999999999999988765
No 232
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=49.25 E-value=1.3e+02 Score=33.73 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=59.4
Q ss_pred cEEEEE--eCCHHHHHH---HHHHHH-hCCCeEEEECCHHHHHH----------------HHHhcCCCceEEEEeCCCCC
Q 009824 24 MRVLAV--DDDQTCLKI---LEKFLR-ECQYEVTVTNRAITALK----------------MLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 24 irVLIV--DDdp~~~~~---L~~~L~-~~gy~V~~a~sg~eALe----------------~L~e~~~~pDLVIlDi~MPd 81 (524)
-+|+|| -+.+..... +..+|+ ..|++|.........+. .+.+....+|+||+ -|
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iG 270 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LG 270 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----EC
Confidence 357777 455555544 444555 46788775443222110 00001123677766 48
Q ss_pred CCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 82 MDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 82 mdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
.||. +|+..+ ....+||+-+ ..|=.+||. ++..+++..++..++++.
T Consensus 271 GDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 271 GDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCC
Confidence 8995 444333 2346787743 467888985 789999999999988753
No 233
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.16 E-value=2.7e+02 Score=27.37 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=52.3
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCC---CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe------
Q 009824 55 RAITALKMLRENRNNFD-LVISDVYMP---DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL------ 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pD-LVIlDi~MP---dmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~------ 124 (524)
+..+..+.+... .++ +++.|+..- ..-.+++++.+....++|||+..+-.+.+.+.+..+.||...++
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 445555555433 255 566666321 22356778888666689999999999999999989999999765
Q ss_pred CCCCHHHHHH
Q 009824 125 KPVRMEELKN 134 (524)
Q Consensus 125 KP~~~eeL~~ 134 (524)
.|+..++++.
T Consensus 228 ~~~~~~~~~~ 237 (241)
T PRK13585 228 GKFTLEEAIE 237 (241)
T ss_pred CCcCHHHHHH
Confidence 4555555443
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=49.04 E-value=1.6e+02 Score=30.11 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=42.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------CC----eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC------QY----EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDM 82 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~------gy----~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm 82 (524)
+.+|..||-+|.+..+|+.-|++. +- ++. ...+..+.++. ....||+|.+|-+-|..
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 568999999999999999999874 21 233 34556666554 23359999999998864
No 235
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.13 E-value=2.2e+02 Score=29.84 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=60.1
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCC
Q 009824 24 MRVLAVD--DDQT---CLKILEKFLRECQYEVTVTNRAITALKM----------------LRENRNNFDLVISDVYMPDM 82 (524)
Q Consensus 24 irVLIVD--Ddp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~----------------L~e~~~~pDLVIlDi~MPdm 82 (524)
.+|.||- +.+. ....+..+|++.|++|.........+.. .......+|+||+ -|.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 4577773 3333 3455666677788888765433222110 0111123677766 488
Q ss_pred CHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 83 DGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 83 dGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
||. +|+..+ ...++||+-+- .|=.+||.- +..+++..+++.++++.
T Consensus 82 DGT-~L~aar~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 82 DGT-ILRAAELARAADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CHH-HHHHHHHhccCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 994 333332 23578887654 366788884 77899999999888753
No 236
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=48.05 E-value=1e+02 Score=35.36 Aligned_cols=91 Identities=15% Similarity=0.217 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
+.+.++|.|+...+.++ +.|+.|...+ +-.+.++... -.+.|++++-..=++ .-..++..+| ..|+++||+
T Consensus 424 ~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~ag--i~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 424 VKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAG--AAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhcC--CCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence 44555565555443332 2355544321 1222222221 123566665442211 2233444444 467888877
Q ss_pred EecCCCHHHHHHHHhcCCcEEE
Q 009824 102 LSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL 123 (524)
.+. +.+...+..+.||+..+
T Consensus 497 Ra~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 497 RAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEC--CHHHHHHHHHCCCCEEe
Confidence 654 44566777788988654
No 237
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.04 E-value=1.7e+02 Score=28.94 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=56.9
Q ss_pred HHHHhCCC-eEEEECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhc
Q 009824 41 KFLRECQY-EVTVTNRAITALKMLRENR-NNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINH 117 (524)
Q Consensus 41 ~~L~~~gy-~V~~a~sg~eALe~L~e~~-~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~ 117 (524)
..|...+. -|....+.+++++.++.-. ..++ ++.+-|-.-++++.++.++. .++ -+|-.-.-.+.+.+..++++
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHHHc
Confidence 44444443 3446677888877766432 1355 34444555589999988854 454 33444445566889999999
Q ss_pred CCcEEEeCCCCHHHHHHHH
Q 009824 118 GACDYLLKPVRMEELKNTW 136 (524)
Q Consensus 118 GA~dYL~KP~~~eeL~~aI 136 (524)
||.-.++.-++. ++....
T Consensus 87 GA~FivsP~~~~-~vi~~a 104 (212)
T PRK05718 87 GAQFIVSPGLTP-PLLKAA 104 (212)
T ss_pred CCCEEECCCCCH-HHHHHH
Confidence 998777655666 454443
No 238
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=47.45 E-value=2.7e+02 Score=26.94 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI 136 (524)
++..+.+.. .|++|.-... +.-|..+++.+. ..+|||+... .. ..+.+..+-.+++..+.+.+++..++
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 455555432 5666654433 344566777664 3578775443 22 33445567889999999999999999
Q ss_pred HHHHH
Q 009824 137 QHVIR 141 (524)
Q Consensus 137 ~~vlr 141 (524)
..++.
T Consensus 336 ~~~~~ 340 (374)
T cd03801 336 LRLLD 340 (374)
T ss_pred HHHHc
Confidence 88764
No 239
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.32 E-value=1.9e+02 Score=29.78 Aligned_cols=54 Identities=15% Similarity=0.323 Sum_probs=32.6
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH---HHhcCCCceEEEEeCC
Q 009824 24 MRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKM---LRENRNNFDLVISDVY 78 (524)
Q Consensus 24 irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~---L~e~~~~pDLVIlDi~ 78 (524)
.+|.+|+-|+. ....++.+.+..++.+..+.+..+..+. +... ..+|+||+|.-
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 46777766543 3344455555568888776665443333 3322 35899999983
No 240
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=47.25 E-value=26 Score=33.51 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=27.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN 54 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~ 54 (524)
|||||||.....-..+.++|++.|+++....
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 7999999999888889999999998877554
No 241
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=46.88 E-value=1.2e+02 Score=30.14 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCC-C--HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDM-D--GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdm-d--GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+..+.+.... ..+|++|+.--++ . .+++++.+....++|||+--+-.+.+.+.++.+.||+..+.
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4444555554332 4799999976543 3 37788888766789999999999999999999999998876
No 242
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=46.74 E-value=30 Score=34.01 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe-C-CCCCCCHHH--HHHHHhcCCCCcE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD-V-YMPDMDGFK--LLELVGLEMDLPV 99 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlD-i-~MPdmdGle--LLe~Lr~~~diPV 99 (524)
|||||+|........+...|++.|+++.........+....+....+|.||+- = ..|..++.+ +++.+. ..++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 68999999988888889999998998775543221111111111237766652 1 123333332 333321 236887
Q ss_pred EEEe
Q 009824 100 VMLS 103 (524)
Q Consensus 100 IvlT 103 (524)
+-+.
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 6553
No 243
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=46.73 E-value=39 Score=32.97 Aligned_cols=53 Identities=38% Similarity=0.498 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQ--YEVT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~g--y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
-++++||-+......|++-++.++ -++. ...++..++..+... ..+|+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 479999999999999999998776 3333 345566666665432 2499999995
No 244
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=46.68 E-value=67 Score=30.53 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=35.8
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 70 FDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 70 pDLVIlDi~MPdmdG-------leLLe~Lr~-----~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+|.|+++-..|+.+| ++.++.++. .+++||++.-+-. .+.+.++++.||+.++.=
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 688877766666544 333433322 2257876665554 588889999999998763
No 245
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.58 E-value=1.3e+02 Score=30.86 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=57.7
Q ss_pred cEEEEEe--CC---HHHHHHHHHHHHhCCCeEEEECCHHHHHHH-----H-HhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 24 MRVLAVD--DD---QTCLKILEKFLRECQYEVTVTNRAITALKM-----L-RENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 24 irVLIVD--Dd---p~~~~~L~~~L~~~gy~V~~a~sg~eALe~-----L-~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
|||.||- +. ......+..+|++.+++|.......+.... + .....++|+||+ -|.||. +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 5777772 22 233455666777788888765332211110 0 001124777776 478885 333333
Q ss_pred -cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 93 -LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 93 -~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
...++||+.+.. |-.+|+. .+.++++..++..++++
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 234789887764 3346665 67788888888888765
No 246
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=46.47 E-value=2.8e+02 Score=28.85 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred cEEEEEeCC---H-HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCC
Q 009824 24 MRVLAVDDD---Q-TCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM 95 (524)
Q Consensus 24 irVLIVDDd---p-~~~~~L~~~L~~~gy--~V~~a~--sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~ 95 (524)
++++||.+. . .....++.+.++.+. .|.... +.++..+.+.. .|+.++-.. .+.-|+.+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 666777531 1 334556666665543 344322 34555555542 577765433 3445777777764 3
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+|||.... .. ..+.+..|..+++..|-+.+++.+++..++.
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 579886443 32 3345677899999999999999999988875
No 247
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.46 E-value=1.7e+02 Score=30.61 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=59.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---C--CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 25 RVLAVDDDQTCLKILEKFLRE---C--QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~---~--gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
-|||=|.|-...-.+...++. . ...| +.+.+.+++.+++.. .+|+|++|-+-|+ ++-+.++....-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe----~l~~av~~~~~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD----MMREAVRVTAGRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHhhcCCe
Confidence 377777776555445554432 1 1234 367899999999864 3899999954332 2333332212234
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+|-.|+.-+.+.+.+..+.|++..-+
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 67788889999999998999886544
No 248
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=46.35 E-value=1.7e+02 Score=28.33 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=46.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe--CCCCHHHHHHHHHHH
Q 009824 72 LVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL--KPVRMEELKNTWQHV 139 (524)
Q Consensus 72 LVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~--KP~~~eeL~~aI~~v 139 (524)
|-++|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 44455544444566788888766789999876667777888999999999973 224445555555544
No 249
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=46.26 E-value=1e+02 Score=31.33 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=44.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLREN---RNNFDLVISDVY 78 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~---~~~pDLVIlDi~ 78 (524)
+|+.-+|.-+|-++...+.-+..+++.|+ .|. ...++.+.+..+... ...||+||+|..
T Consensus 101 l~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 101 LPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 45566899999999999999999998875 354 456777777766432 246999999986
No 250
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=46.23 E-value=70 Score=33.69 Aligned_cols=63 Identities=27% Similarity=0.484 Sum_probs=48.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 009824 25 RVLAVDDDQTCLKILEKFLRE--CQYE---VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~--~gy~---V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe 89 (524)
.|+++|-|..+.+.=+.++.. +||+ |. ...+|...++.+.++ .+|+||+|..=|.+.+-.+..
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHHH
Confidence 488899999888888888875 4663 43 445888888877654 499999999999998877653
No 251
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.86 E-value=3.1e+02 Score=28.54 Aligned_cols=93 Identities=22% Similarity=0.126 Sum_probs=60.1
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 009824 25 RVLAVDDDQTCL--K--ILEKFLR----ECQY--EV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (524)
Q Consensus 25 rVLIVDDdp~~~--~--~L~~~L~----~~gy--~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~ 93 (524)
.|||=|.|-... - .+...++ ..++ .| +.+.+.+++.+++.. .+|+|++|-.-| -++-+.+..
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~----e~l~~av~~ 233 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSL----DDLREGVEL 233 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCH----HHHHHHHHH
Confidence 377777775543 1 2444443 2342 34 478999999998863 489999995333 333333322
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-....+|-.|+.-+.+.+.+....|++...+
T Consensus 234 ~~~~~~leaSGgI~~~ni~~yA~tGVD~Is~ 264 (281)
T PRK06543 234 VDGRAIVEASGNVNLNTVGAIASTGVDVISV 264 (281)
T ss_pred hCCCeEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 2223478899999999999999999876543
No 252
>PLN02275 transferase, transferring glycosyl groups
Probab=45.35 E-value=2.6e+02 Score=29.23 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=65.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEE---CCHHHHHHHHHhcCCCceEEEEeC-CCC-CCCHHHHHHHHhcCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVT---NRAITALKMLRENRNNFDLVISDV-YMP-DMDGFKLLELVGLEMD 96 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-V~~a---~sg~eALe~L~e~~~~pDLVIlDi-~MP-dmdGleLLe~Lr~~~d 96 (524)
.++.+||.|-+. +..+++.+++.+.. |+.. -..++.-+.+.. .|+.++=. ..- ..=+..+++.+. ..
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA--~G 333 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFG--CG 333 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHH--CC
Confidence 589999998875 56777777776653 3332 234555555543 67876410 010 112566777663 46
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
+|||.. ..+. ..+.++.|.++|+.. +.++|.+++..+
T Consensus 334 ~PVVa~-~~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 334 LPVCAV-SYSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred CCEEEe-cCCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 899874 3333 456677899999986 578888877654
No 253
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=45.34 E-value=1.1e+02 Score=34.87 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=25.7
Q ss_pred HHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 85 leLLe~Lr-~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
..++..+| ..|+++||+-+. +.+...+..+.||+..+.-
T Consensus 479 ~~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 479 MKIVELCQQHFPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred HHHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 34445554 467888877654 3456777778999987753
No 254
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.24 E-value=1.2e+02 Score=30.10 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 54 NRAITALKMLRENRNNFD-LVISDVYMPD---MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pD-LVIlDi~MPd---mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+..+..+.+.+.. +| ++++|+.--+ ..-+++++.++....+||++--+-.+.+.+.+++..|++..+.
T Consensus 27 ~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 27 GDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 46777777776542 54 8888887422 1235677888766779999999999999999999999877655
No 255
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=45.13 E-value=3.1e+02 Score=28.52 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=51.1
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 24 MRVLAV-DDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 24 irVLIV-DDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
++++++ .++...+..++...+..+-.|....-..+..+++. ..|+++++ ++ |+.++|.+. ..+|+|+.
T Consensus 231 ~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~----~aD~~v~~---~g--g~t~~EA~a--~g~PvI~~ 299 (380)
T PRK13609 231 LQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFR----VTSCMITK---PG--GITLSEAAA--LGVPVILY 299 (380)
T ss_pred cEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHH----hccEEEeC---CC--chHHHHHHH--hCCCEEEC
Confidence 555544 44454555555555443323333322222223332 15676652 22 666666653 35787765
Q ss_pred ecCCC--HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 103 SAYSD--TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 103 Ta~~d--~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..... .+......+.|+. ..+.+.++|..++..++.
T Consensus 300 ~~~~g~~~~n~~~~~~~G~~---~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 300 KPVPGQEKENAMYFERKGAA---VVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCcchHHHHHHHhCCcE---EEECCHHHHHHHHHHHHC
Confidence 43222 1222223345552 234577888888887764
No 256
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=44.76 E-value=54 Score=31.70 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=35.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|||+|||-.-.+...+.+.|+..|+++....+..+ + ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H----ccCCEEEE
Confidence 68999999999999999999999999887765321 2 23888777
No 257
>PLN02476 O-methyltransferase
Probab=44.62 E-value=1e+02 Score=31.96 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN--RNNFDLVISDVY 78 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~-~a~sg~eALe~L~e~--~~~pDLVIlDi~ 78 (524)
+|+.-+|.-+|-++...+..+..+++.|+. |. ...++.+.|..+... ...||+||+|..
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 344457999999999999999999998874 44 456777777665321 246999999975
No 258
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=44.62 E-value=2e+02 Score=30.90 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=46.5
Q ss_pred ceEEEEeCCCCCCCHHHHH-HHHhcCCCCcEEEE-ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFKLL-ELVGLEMDLPVVML-SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLL-e~Lr~~~diPVIvl-Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+.+|++..-+..=-+|.+ ..+. .....||.. ....+...+..+++.|+++.+.+|-++.+++.....+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 6777777655444444422 3332 233445444 334455667788899999999999999999887776543
No 259
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=44.47 E-value=80 Score=30.38 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=43.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~--V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
+|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|-=.....--++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999999988877653 33 4456656655443222237999998633332333455555
No 260
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.31 E-value=3.9e+02 Score=30.69 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=59.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
++++||.|.+. +..++.+.++.+. .|.......+..+.+.. .|+.++=-. -+.-|..+++.+. ..+|||.
T Consensus 430 irLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~EGfp~vlLEAMA--~GlPVVA 501 (578)
T PRK15490 430 TRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YEGLPNVLIEAQM--VGVPVIS 501 (578)
T ss_pred eEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-ccCccHHHHHHHH--hCCCEEE
Confidence 56666666543 3445555555443 24433333333333331 566665322 2445667777664 4579984
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHH
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~ 138 (524)
.- .+. ..+.+..|.++|+.+|.+.+.+..++..
T Consensus 502 Td-vGG---~~EiV~dG~nG~LVp~~D~~aLa~ai~l 534 (578)
T PRK15490 502 TP-AGG---SAECFIEGVSGFILDDAQTVNLDQACRY 534 (578)
T ss_pred eC-CCC---cHHHcccCCcEEEECCCChhhHHHHHHH
Confidence 43 333 3355668999999999888777766543
No 261
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=44.27 E-value=1.9e+02 Score=33.32 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=67.7
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHH-h--cCCCCcEEEEecCCCH
Q 009824 39 LEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMP-D----MDGFKLLELV-G--LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 39 L~~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~MP-d----mdGleLLe~L-r--~~~diPVIvlTa~~d~ 108 (524)
.-..|++.||.+.. +.++-..+..|..-. +|.|=+|-.+- + .....+++.+ . ...++.|| ..+-.+.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~~ 759 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVETK 759 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCCH
Confidence 34457778999864 567777778777654 99999997542 1 1234455544 2 33455554 6788888
Q ss_pred HHHHHHHhcCCcE----EEeCCCCHHHHHHHHHH
Q 009824 109 KLVMKGINHGACD----YLLKPVRMEELKNTWQH 138 (524)
Q Consensus 109 ~~~~~al~~GA~d----YL~KP~~~eeL~~aI~~ 138 (524)
+....+.+.|++. |+.||...++|...++.
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 8888888999973 68899999999886544
No 262
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=44.02 E-value=1.2e+02 Score=30.64 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=61.8
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE--E---C--CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhcCC-CC
Q 009824 28 AVDDDQTCLKILEKFLRECQYEVTV--T---N--RAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGLEM-DL 97 (524)
Q Consensus 28 IVDDdp~~~~~L~~~L~~~gy~V~~--a---~--sg~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLLe~Lr~~~-di 97 (524)
+..|.....++++.+- ..+..|.. - . +..+..+.+.+. ..|.|.+|...|+. -.++.++.++... ++
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 3445555555555554 33444331 1 1 222344445443 48988889777764 2477788887664 59
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
|||-.-+-.+.+.+.+.+++||+...+
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999998764
No 263
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=43.93 E-value=1.9e+02 Score=31.74 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=60.4
Q ss_pred CccEEEEEeC---CHHH-HHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 009824 22 IGMRVLAVDD---DQTC-LKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------M 82 (524)
Q Consensus 22 ~~irVLIVDD---dp~~-~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------m 82 (524)
.+..+++||- +... .+.++.+=+.+ +..|. .+.+.++|..++.. ..|.|.+-+ -|+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~-g~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGI-GPGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECC-CCCcCCccceecCCCc
Confidence 3567888887 4332 23333332232 33433 45677888777753 367775432 121 1
Q ss_pred CHHHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 83 dGleLLe~L---r~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
--+.++..+ ....++|||.=.+......+.+|+.+||+....=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 123333322 2235789998889999999999999999998763
No 264
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=43.92 E-value=2.4e+02 Score=28.93 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=62.8
Q ss_pred ccEEEEEeC---CHHHHHHHHHHHHhCCC---eEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 009824 23 GMRVLAVDD---DQTCLKILEKFLRECQY---EVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDD---dp~~~~~L~~~L~~~gy---~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~ 93 (524)
.++++++-+ .+...+.++..+...+. .|+.. -+..+..+.+.. .|++++=.. .+.-|+.+++.+.
T Consensus 229 ~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a- 302 (388)
T TIGR02149 229 DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA- 302 (388)
T ss_pred cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH-
Confidence 345555532 33444556665554432 13322 234555555542 677776322 2344666777663
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCH------HHHHHHHHHHHH
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRM------EELKNTWQHVIR 141 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~------eeL~~aI~~vlr 141 (524)
..+|||+. ..+. ..+.+..|..+++.++-+. ++|..++..++.
T Consensus 303 -~G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 -CGTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred -cCCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 45788753 3333 4455677889999999887 788888877654
No 265
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=43.90 E-value=1.2e+02 Score=30.58 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCC-C--HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHH-hcCCcEEEe
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDM-D--GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGI-NHGACDYLL 124 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdm-d--GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al-~~GA~dYL~ 124 (524)
..+..+.+.+.. --.+++.|+.--++ . -+++++.++...++|||.-.+-.+.+.+.+++ +.|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 456666665432 23488888754332 3 35677777766889999999999999999999 799998765
No 266
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=43.83 E-value=3.6e+02 Score=27.27 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 84 GFKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~---~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
+..+++.+. ..+|+|+.... .+.....+.+..+-.+++..+- +.++|.+++..++.
T Consensus 260 ~~~l~Ea~~--~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 260 ASTVAELAA--AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hhHHHHHHH--cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 345556553 46898876321 1212223445566778887764 48999999988874
No 267
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=43.71 E-value=2.9e+02 Score=29.70 Aligned_cols=108 Identities=11% Similarity=0.173 Sum_probs=66.6
Q ss_pred ccEEEEEeCCH-----HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 009824 23 GMRVLAVDDDQ-----TCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp-----~~~~~L~~~L~~~gy--~V~~a~--sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~ 93 (524)
.++++||.+.+ ...+.|+++.++.+. .|.... +-++..++++. .|+++.=.. .+.=|+.++|.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~-~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMW-NEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCc-cCCcccHHHHHHH-
Confidence 47888888642 345666766666554 355433 35666666653 577765322 2334777888774
Q ss_pred CCCCcEEEEecCCCHHHHHHHHh---cCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGIN---HGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~---~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
..+|+|.....+. ..+.++ .|.++|+.. +.+++..++..++..
T Consensus 347 -~G~pvIa~~~ggp---~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 347 -AGLIPLAHASGGP---LLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred -cCCcEEEEcCCCC---chheeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 3467775432222 223344 688999974 899999999988763
No 268
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=43.60 E-value=30 Score=33.21 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=34.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|||||.....--.|.++|++.|+++..+...+..++.+... .||.||+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iil 49 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVI 49 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEE
Confidence 89999999999999999999898887665432122333322 3777666
No 269
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.44 E-value=2.2e+02 Score=29.81 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=60.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCC
Q 009824 25 RVLAVDDDQTCLKILEKFLRE----CQ--YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~----~g--y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~di 97 (524)
-|||=|.|-...-.+...+++ .. ..|. .+.+.+++.+++.. .+|+|++|-+-|+ ++-+.+..-..-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe----~l~~av~~~~~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE----QIEQAITLIAGR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHHhcCc
Confidence 378777776655445555533 33 2343 67899999999864 3899999954332 232322211123
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+|-.|+.-+.+.+.+....|++...+
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~Is~ 268 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYVSS 268 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 467788899999999998999887543
No 270
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=43.36 E-value=1.2e+02 Score=28.86 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHH-h--cCCCCcEEEEecCCC
Q 009824 38 ILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELV-G--LEMDLPVVMLSAYSD 107 (524)
Q Consensus 38 ~L~~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLLe~L-r--~~~diPVIvlTa~~d 107 (524)
..-..|++.|+.+.. +..+...+..+...+ ||.|-+|..+-. .....+++.+ . ....+.| +.++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQV-VAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeE-EEecCCC
Confidence 334556777998764 345566667776554 999999975431 1233455544 2 2344554 4778888
Q ss_pred HHHHHHHHhcCCcE----EEeCCCCH
Q 009824 108 TKLVMKGINHGACD----YLLKPVRM 129 (524)
Q Consensus 108 ~~~~~~al~~GA~d----YL~KP~~~ 129 (524)
.+....+.+.|++. |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 88888889999863 56777654
No 271
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=43.34 E-value=1.9e+02 Score=30.80 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 009824 24 MRVLAVDDDQTCL-----KILEKFLRECQYEVTVTNR---------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 24 irVLIVDDdp~~~-----~~L~~~L~~~gy~V~~a~s---------g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe 89 (524)
-|+|||-|..... +.+...|++.|+++..+.. ..++.+.+++.. +|+||- .-|++-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4789998876544 6678888877877765532 466777777654 898874 34666666555
Q ss_pred HH
Q 009824 90 LV 91 (524)
Q Consensus 90 ~L 91 (524)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 43
No 272
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=43.22 E-value=1.3e+02 Score=31.44 Aligned_cols=92 Identities=9% Similarity=0.020 Sum_probs=58.6
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC-C-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 26 VLAVDDDQTCLKILEKFLRE----CQ-Y-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~----~g-y-~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
|||=|.|-...-.+...+++ .. . -.+.+.+.+++.++++. .+|+|.+|-.-| -++-+.++....-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~----e~~~~av~~~~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT----EQMREAVKRTNGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh----HHHHHHHHhhcCCeE
Confidence 56666554444344444432 21 2 23478899999999874 389999996554 223333332222346
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
|..|+.-+.+.+.+..+.|++.+.+
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEe
Confidence 7788888999999999999987654
No 273
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=43.20 E-value=3.9e+02 Score=27.44 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCcEEEEec----CCCHHHHHHHH-hcCCcEEEeCCCC--HHHHHHHHHHHHH
Q 009824 85 FKLLELVGLEMDLPVVMLSA----YSDTKLVMKGI-NHGACDYLLKPVR--MEELKNTWQHVIR 141 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa----~~d~~~~~~al-~~GA~dYL~KP~~--~eeL~~aI~~vlr 141 (524)
..+++.+. ..+|+|++.. ..+.....+.+ +.| .+++..+-+ .++|.+++..++.
T Consensus 263 ~~~~Ea~~--~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 263 STVAELAA--AGLPAILVPLPHAADDHQTANARALVDAG-AALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred HHHHHHHH--hCCCEEEecCCCCCcCcHHHHHHHHHHCC-CEEEEEcccCCHHHHHHHHHHHHc
Confidence 44556553 4689987753 12232233444 455 477776644 8999999998875
No 274
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=43.09 E-value=3.6e+02 Score=29.29 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=60.6
Q ss_pred HHHHHHhCCCeEEE----ECCHHHHHHHHHhcCCCceEEEEeCC----CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHH
Q 009824 39 LEKFLRECQYEVTV----TNRAITALKMLRENRNNFDLVISDVY----MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKL 110 (524)
Q Consensus 39 L~~~L~~~gy~V~~----a~sg~eALe~L~e~~~~pDLVIlDi~----MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~ 110 (524)
+.+..++.|..+.. +.+..+.++.+.+. ..|.|.+..- .....+++.++.++...++||++..+- ..+.
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n 175 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAET 175 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHH
Confidence 33444456766553 12333333333332 3788766531 112456788888865566999887766 5778
Q ss_pred HHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 009824 111 VMKGINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 111 ~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~ 142 (524)
+.+++++||+.+.. +.-++.+....++..+.+
T Consensus 176 ~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 176 AAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 88999999997654 444556666666665554
No 275
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.99 E-value=1.2e+02 Score=30.21 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..++++.+.+.. -.+|++|+.=-++ .|++ +..+...++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d--~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE--EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH--HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3456666665442 3699999977664 6777 323333589999999999999999999999998776
No 276
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=42.95 E-value=2.6e+02 Score=28.11 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=54.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC---------C--------------C
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV---------Y--------------M 79 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi---------~--------------M 79 (524)
+.+|..||-++...+..+.-++..+.++.. .+..+.+.... ...+|+||+|- . .
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~--~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~ 186 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTAL--RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALD 186 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhc--CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhc
Confidence 368999999999999988888776665543 33333322111 13599999984 0 1
Q ss_pred CCCCHHHHHHHH-h-----cCCCCcEEEEecCCCHHHHHHHH
Q 009824 80 PDMDGFKLLELV-G-----LEMDLPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 80 PdmdGleLLe~L-r-----~~~diPVIvlTa~~d~~~~~~al 115 (524)
.+.||+++++.+ + ..+.-.+++.++......+...+
T Consensus 187 gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 187 GGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 234778777544 2 23444566666665555555554
No 277
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.94 E-value=1.9e+02 Score=31.22 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=51.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC-CCCCCHH--HHHHHHhc--CC
Q 009824 24 MRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY-MPDMDGF--KLLELVGL--EM 95 (524)
Q Consensus 24 irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~-MPdmdGl--eLLe~Lr~--~~ 95 (524)
.+|.+|..|.. ..+.|+.+-+..|..+..+.+..+....+.+. ..+|+||+|.- +...|.. +.+..+.. .+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 46777766654 34555655666677777666665555555543 35899999984 2222332 23333321 12
Q ss_pred CCcEEEEecCCCHHHHHHH
Q 009824 96 DLPVVMLSAYSDTKLVMKG 114 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~a 114 (524)
.-.++|+++....+...+.
T Consensus 247 ~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 247 VQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred CeEEEEecCccChHHHHHH
Confidence 2347788877766554433
No 278
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=42.90 E-value=2.1e+02 Score=29.30 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 82 mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.-|+.+++.+. ..+|||....... ..+.+..|..+|+.+|-+.++|..++..++..
T Consensus 290 g~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 290 GFGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred ccChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 34566666653 4678886532212 23445678999999999999999999988753
No 279
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=42.70 E-value=1.3e+02 Score=32.56 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=52.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-HhcCCCCcEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYE-V-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL-VGLEMDLPVVM 101 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~-V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~-Lr~~~diPVIv 101 (524)
+|..+|=++...+.++.-++..+.. + +...++.+.+.. ...+|+|++|- | ..+.+++.. ++....-.+|.
T Consensus 83 ~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~----~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 83 KVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE----ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh----cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999988766553 2 234455444322 23599999995 4 445567765 55444567999
Q ss_pred EecCCCHH
Q 009824 102 LSAYSDTK 109 (524)
Q Consensus 102 lTa~~d~~ 109 (524)
+|+.+-..
T Consensus 156 vSAtD~~~ 163 (382)
T PRK04338 156 VTATDTAP 163 (382)
T ss_pred EEecCchh
Confidence 99765443
No 280
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.47 E-value=1.4e+02 Score=29.51 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCCce-EEEEeCCC---CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc-CCcEEEe
Q 009824 58 TALKMLRENRNNFD-LVISDVYM---PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH-GACDYLL 124 (524)
Q Consensus 58 eALe~L~e~~~~pD-LVIlDi~M---PdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~-GA~dYL~ 124 (524)
+..+.+.+. .+| +++.++.= -.+-.+++++.++...++|||..-+..+.+.+.++++. ||+..++
T Consensus 153 ~~~~~l~~~--G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEEL--GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHC--CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 333444433 377 55655431 11224677887766678999999999999999999987 8987766
No 281
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=42.31 E-value=1.9e+02 Score=29.66 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH----HHHHh-cC-CCCcEEEEecCCCHHHHHHHH
Q 009824 43 LRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKL----LELVG-LE-MDLPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 43 L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleL----Le~Lr-~~-~diPVIvlTa~~d~~~~~~al 115 (524)
-.+.|.++. .+++.+|+-+++.- +.-|+.++--+...|++ .+.+. .. .+.-+|.-|+-...+.+.+..
T Consensus 152 A~~LGm~~LVEVh~~eEl~rAl~~-----ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~ 226 (254)
T COG0134 152 AHELGMEVLVEVHNEEELERALKL-----GAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLA 226 (254)
T ss_pred HHHcCCeeEEEECCHHHHHHHHhC-----CCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHH
Confidence 345688876 78899988888762 33455555555555443 23332 22 245567778899999999999
Q ss_pred hcCCcEEEeC
Q 009824 116 NHGACDYLLK 125 (524)
Q Consensus 116 ~~GA~dYL~K 125 (524)
++||++||+=
T Consensus 227 ~~ga~a~LVG 236 (254)
T COG0134 227 KAGADAFLVG 236 (254)
T ss_pred HcCCCEEEec
Confidence 9999999983
No 282
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=42.30 E-value=92 Score=29.77 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHH-h--cCCCCcEEEEecCCCH
Q 009824 39 LEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMP-D----MDGFKLLELV-G--LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 39 L~~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~MP-d----mdGleLLe~L-r--~~~diPVIvlTa~~d~ 108 (524)
....|+..||.+.. +..+...++.+.... ||.|-+|..+. + .....+++.+ + ...+++| ++++-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKV-VAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeE-EEEecCCH
Confidence 44446677998775 345666667776554 99999997543 1 2334555544 2 2345554 47888888
Q ss_pred HHHHHHHhcCCcE----EEeCCCCH
Q 009824 109 KLVMKGINHGACD----YLLKPVRM 129 (524)
Q Consensus 109 ~~~~~al~~GA~d----YL~KP~~~ 129 (524)
+....+.+.|++. |+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 9999999999953 56677654
No 283
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=42.26 E-value=2.4e+02 Score=26.79 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=38.5
Q ss_pred CHHHHHHHHhcCCCCcEEE-EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHH
Q 009824 83 DGFKLLELVGLEMDLPVVM-LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138 (524)
Q Consensus 83 dGleLLe~Lr~~~diPVIv-lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~ 138 (524)
-|++.++.++...+.|+.+ +...+....+..+.+.||+..+.-....++....++.
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 5888899887666677632 4445556778888899999988766555555555543
No 284
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.16 E-value=66 Score=31.09 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=35.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|+|+|||-.--+...+...|++.|+++..+.+.++. ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~--------~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVI--------LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHh--------CCCCEEEE
Confidence 689999988888899999999999999988776432 13787775
No 285
>PRK00811 spermidine synthase; Provisional
Probab=42.11 E-value=2.7e+02 Score=28.52 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=40.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLREC------QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~------gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
+..-+|.+||=++.+.+..++.|... .-+|. ...++.+.++. ....+|+||+|..-|.
T Consensus 98 ~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 98 PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 33458999999999999999988642 22343 45666655443 3346999999986664
No 286
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=42.10 E-value=2e+02 Score=28.73 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=59.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++++|+.+.+.. +.+++.++..+. .|.......+..+++.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4677777765533 445555555432 34444333344444432 5676664332 233667777764 356887
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+ +.... ..+.+.. .+++.++.+.+++..++..++.
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 33322 2222222 5778889999999999988874
No 287
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.09 E-value=1.6e+02 Score=30.67 Aligned_cols=92 Identities=15% Similarity=0.060 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 26 VLAVDDDQTCLKILEKFLRE----CQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~----~g--y~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
|||=|.|-...-.+...+++ .. ..| +.+.+.+++.+++.. .+|+|.+|-+-| -++-+.++.....-
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~----e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTP----DTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCH----HHHHHHHHHhCCCc
Confidence 56655554444334444432 33 233 478899999999864 489999996433 33333333222223
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+|-.|+.-+.+.+.+..+.|++.+-+
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~Is~ 265 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLISV 265 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 48889999999999999999876543
No 288
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=42.03 E-value=3e+02 Score=29.99 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=37.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-------------------CCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY-EVTVT-------------------NRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy-~V~~a-------------------~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
..||||||..--.-+.+...+.+...+ +|.++ .+.++.++.+++. .+|+|+....-|-
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~--~iD~Vv~g~E~~l 80 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSN--PFDLIVVGPEDPL 80 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHc--CCCEEEECCchHH
Confidence 358999999988877777666554212 22221 3445555566654 4999998765444
Q ss_pred CCHH
Q 009824 82 MDGF 85 (524)
Q Consensus 82 mdGl 85 (524)
..|+
T Consensus 81 ~~gl 84 (426)
T PRK13789 81 VAGF 84 (426)
T ss_pred HHHH
Confidence 4443
No 289
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=41.77 E-value=66 Score=31.57 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=34.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHH
Q 009824 72 LVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132 (524)
Q Consensus 72 LVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL 132 (524)
+=++.+.|-.-+.++.++.++ ..+++ +|=.-.-.+.+.+.+++++||...+..-++.+-+
T Consensus 34 i~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~ 94 (196)
T PF01081_consen 34 IRAIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVI 94 (196)
T ss_dssp --EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEESS--HHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 335566666667788887664 34442 3444455678889999999998777654555433
No 290
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=41.19 E-value=2.4e+02 Score=28.76 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=61.6
Q ss_pred HHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh---cCCCCcEEEEecCCCHHHHH
Q 009824 38 ILEKFLRECQYEVTVTNR--AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG---LEMDLPVVMLSAYSDTKLVM 112 (524)
Q Consensus 38 ~L~~~L~~~gy~V~~a~s--g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr---~~~diPVIvlTa~~d~~~~~ 112 (524)
.++..|+.-...|-.... ..-..|.+.. ..||.+++|..--..|.-.++..++ ..+..||| --...+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvV-R~p~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVV-RPPVGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCee-eCCCCCHHHHH
Confidence 356666653344433222 2233445543 3599999999888888888888775 33445555 55567788999
Q ss_pred HHHhcCCcEEEeCCCCHHHHH
Q 009824 113 KGINHGACDYLLKPVRMEELK 133 (524)
Q Consensus 113 ~al~~GA~dYL~KP~~~eeL~ 133 (524)
++++.||...|..=++..|=.
T Consensus 84 q~LD~GAqtlliPmV~s~eqA 104 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQA 104 (255)
T ss_pred HHHccccceeeeeccCCHHHH
Confidence 999999999999666544433
No 291
>PRK01362 putative translaldolase; Provisional
Probab=41.10 E-value=1.8e+02 Score=28.94 Aligned_cols=81 Identities=17% Similarity=0.019 Sum_probs=49.9
Q ss_pred HHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHh----cCCCCcEEEEecCCCHHHHH
Q 009824 42 FLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDV---YMPDMDGFKLLELVG----LEMDLPVVMLSAYSDTKLVM 112 (524)
Q Consensus 42 ~L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi---~MPdmdGleLLe~Lr----~~~diPVIvlTa~~d~~~~~ 112 (524)
.|+..|+.| +.+.+..+|+...... ++.|-.=+ .-.+.||+++++.+. ....-.-|+..+..+...+.
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~ 172 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVL 172 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHH
Confidence 355556654 4567888887776543 34322211 123679999987552 22212445566677888999
Q ss_pred HHHhcCCcEEEeC
Q 009824 113 KGINHGACDYLLK 125 (524)
Q Consensus 113 ~al~~GA~dYL~K 125 (524)
++..+|++.+-.-
T Consensus 173 ~~~~~G~d~iTi~ 185 (214)
T PRK01362 173 EAALAGADIATIP 185 (214)
T ss_pred HHHHcCCCEEecC
Confidence 9999999955443
No 292
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=40.97 E-value=1.1e+02 Score=31.04 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009824 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~ 113 (524)
.....|.++.++.|....+..-..++++.|.+ +++-+.=+-=.+.+-+.|++.+.. ...|||+-|+....+.+.+
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHH
Confidence 34455677777788887765556677777754 334444455557788999998854 5789999999998887776
Q ss_pred HH----hcCCcEEE
Q 009824 114 GI----NHGACDYL 123 (524)
Q Consensus 114 al----~~GA~dYL 123 (524)
|+ +.|..++.
T Consensus 131 Av~~~~~~~~~~l~ 144 (241)
T PF03102_consen 131 AVEVLREAGNEDLV 144 (241)
T ss_dssp HHHHHHHHCT--EE
T ss_pred HHHHHHhcCCCCEE
Confidence 65 34555554
No 293
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=40.77 E-value=1.9e+02 Score=30.91 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 009824 24 MRVLAVDDDQTC-----LKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 24 irVLIVDDdp~~-----~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe 89 (524)
-|+|||-|.... .+.+...|+..|+++..+. +..++++.+++.. +|+||- +-|++-+++.+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 103 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSAK 103 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHHH
Confidence 588888776443 3567788888777766543 3456677776654 898874 34555555555
Q ss_pred HH
Q 009824 90 LV 91 (524)
Q Consensus 90 ~L 91 (524)
.+
T Consensus 104 ~i 105 (382)
T cd08187 104 AI 105 (382)
T ss_pred HH
Confidence 43
No 294
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=40.59 E-value=1.9e+02 Score=29.00 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=60.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhcC
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTV-T--NRAITALKMLRENRNNFDLVISDVYMPDM--------DGFKLLELVGLE 94 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~-a--~sg~eALe~L~e~~~~pDLVIlDi~MPdm--------dGleLLe~Lr~~ 94 (524)
|++.|-+......+...+++.|..... + .+..+.++.+.... .|.|++=-.+|.- +..+.++.++..
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 444455555555566666777775542 2 23345555554422 4444332224421 234666777766
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.++||++=.+-.+.+.+.++.++ |+.+++-
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 78999998888888899999999 9999985
No 295
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=40.53 E-value=2.8e+02 Score=27.64 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHH
Q 009824 56 AITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~e 130 (524)
..+..+.+.. .|++++-..-+ +.-|..+++.+. ..+|||.. .... ..+.++.+..+++.++-+.+
T Consensus 246 ~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~ 315 (355)
T cd03799 246 QEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA--MGLPVIST-DVSG---IPELVEDGETGLLVPPGDPE 315 (355)
T ss_pred hHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH--cCCCEEec-CCCC---cchhhhCCCceEEeCCCCHH
Confidence 3455555542 56766533321 223667777663 46788753 3332 34566778889999999999
Q ss_pred HHHHHHHHHHH
Q 009824 131 ELKNTWQHVIR 141 (524)
Q Consensus 131 eL~~aI~~vlr 141 (524)
++..++..++.
T Consensus 316 ~l~~~i~~~~~ 326 (355)
T cd03799 316 ALADAIERLLD 326 (355)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 296
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=40.44 E-value=4.2e+02 Score=28.52 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFDLVISDVYM-------PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~M-------PdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+..+.+.+. .+|+|.++.+- +..+..++.+.++. .++|||. ..-.+.+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 455666666554 48999997532 22355666666654 4799887 5566778888999999999865
No 297
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.28 E-value=2.1e+02 Score=30.00 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=59.7
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCCC
Q 009824 25 RVLAV--DDDQT---CLKILEKFLRECQYEVTVTNRAITALKM----------------LRENRNNFDLVISDVYMPDMD 83 (524)
Q Consensus 25 rVLIV--DDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~----------------L~e~~~~pDLVIlDi~MPdmd 83 (524)
+|.|+ .+.+. ....+..+|++.|+++.......+.+.. .......+|+||+ -|.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 46666 33333 3456666777789988765433222110 0111113677776 4889
Q ss_pred HHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 84 GFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 84 GleLLe~Lr--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|- +|+..+ ...++||+-+. .|-.+||.- +..+++..+++.++++.
T Consensus 79 GT-lL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 79 GT-VLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred HH-HHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCC
Confidence 94 555443 23578887663 366788874 67889999999887653
No 298
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=40.22 E-value=2.6e+02 Score=27.45 Aligned_cols=84 Identities=10% Similarity=-0.030 Sum_probs=49.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc-EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHH
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP-VVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP-VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~e 130 (524)
...+.+++++.++.-. .-.+=++.+.+-.-++++.++.++.....+ +|=.-.--+.+.+..++++||...++ |....
T Consensus 17 r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs-p~~~~ 94 (206)
T PRK09140 17 RGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT-PNTDP 94 (206)
T ss_pred eCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC-CCCCH
Confidence 4456666666554321 123446666676677888888775433323 33333345677889999999965555 65555
Q ss_pred HHHHHHH
Q 009824 131 ELKNTWQ 137 (524)
Q Consensus 131 eL~~aI~ 137 (524)
++....+
T Consensus 95 ~v~~~~~ 101 (206)
T PRK09140 95 EVIRRAV 101 (206)
T ss_pred HHHHHHH
Confidence 5554433
No 299
>PLN02823 spermine synthase
Probab=40.07 E-value=64 Score=34.21 Aligned_cols=55 Identities=25% Similarity=0.371 Sum_probs=38.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-----QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-----gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP 80 (524)
..+|.+||=|+.+.+..++.+... +-++. ...|+.+.++ .....+|+||+|+--|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hCCCCccEEEecCCCc
Confidence 468999999999999999988532 12343 4466666553 3345699999997544
No 300
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=39.95 E-value=2.2e+02 Score=28.20 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCC----CC--CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 54 NRAITALKMLRENRNNFDLVISDVYM----PD--MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pDLVIlDi~M----Pd--mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+..++.++.+ ...|.|.+.-.- ++ --|+++++++....++||+.+-+- +.+.+.+++++||+++-.
T Consensus 119 ~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAv 191 (221)
T PRK06512 119 RDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVAL 191 (221)
T ss_pred CCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEE
Confidence 45666666543 247888775443 11 247888888766678999999876 567888999999999743
No 301
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=39.86 E-value=2.5e+02 Score=28.17 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=58.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++++||.+-+. ...++..+++.+. .|....-.++..+.+. ..|++++-... +.-|+.+++.+. ..+|||
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~ps~~-E~~~~~~lEAma--~G~PvI 294 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQ----AMDVFLFPSLY-EGLPLVLIEAQA--SGLPCI 294 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHH----hcCEEEecccc-cCCCHHHHHHHH--hCCCEE
Confidence 356666665443 2334444443332 2332222233333333 25666653332 334677777664 357888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
.. ...... +.+.. ...|+..+-+++++..++..++...
T Consensus 295 ~s-~~~~~~---~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 295 LS-DTITKE---VDLTD-LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred EE-cCCchh---hhhcc-CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 64 333322 23344 4567777778899999999987643
No 302
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.48 E-value=2e+02 Score=28.40 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=31.6
Q ss_pred EEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHH
Q 009824 74 ISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130 (524)
Q Consensus 74 IlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~e 130 (524)
++.+.|-.-+.++.++.++. .++ -+|=.-.-.+.+.+.+++++||...+..-++.+
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 33444444456666665643 332 223333455778889999999876555434444
No 303
>PRK05637 anthranilate synthase component II; Provisional
Probab=39.35 E-value=50 Score=32.43 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=35.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
.||||||-...+...|..+|++.|+.+..+..... ++.+... .||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEE
Confidence 47999999999999999999999988876654322 2222222 3777776
No 304
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=39.32 E-value=3.5e+02 Score=26.08 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhCCCeEEE-E---C----CHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHhcCCCC
Q 009824 31 DDQTCLKILEKFLRECQYEVTV-T---N----RAITALKMLRENRNNFDLVISDVYM----P-DMDGFKLLELVGLEMDL 97 (524)
Q Consensus 31 Ddp~~~~~L~~~L~~~gy~V~~-a---~----sg~eALe~L~e~~~~pDLVIlDi~M----P-dmdGleLLe~Lr~~~di 97 (524)
+.....+.++.+-+..++.|.. . . +..+.++.+.+. .+|.|.+.-.- + +.-.++.++.++...++
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~i 184 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEAVSI 184 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCC
Confidence 4444555666655555533321 1 1 233344444433 36776554321 1 22346777788777889
Q ss_pred cEEEEecCCCHHHHHHHHhc-CCcEEEe
Q 009824 98 PVVMLSAYSDTKLVMKGINH-GACDYLL 124 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~-GA~dYL~ 124 (524)
|||.--+-.+.+.+.+++.. ||+....
T Consensus 185 pvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 185 PVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred eEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 99998888899999999988 6766543
No 305
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=39.21 E-value=3.5e+02 Score=26.92 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=71.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECC---HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-------HHhcC
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNR---AITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-------LVGLE 94 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a~s---g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe-------~Lr~~ 94 (524)
++=.+++ ...+.+.+++.|..+-++-. ..+.++.+. ...|+||+=..-|+.-|-++.+ ++|..
T Consensus 94 H~E~~q~----~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~---~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~k 166 (224)
T KOG3111|consen 94 HYEATQK----PAELVEKIREKGMKVGLALKPGTPVEDLEPLA---EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREK 166 (224)
T ss_pred EEeeccC----HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh---ccccEEEEEEecCCCchhhhHHHHHHHHHHHHHh
Confidence 4444454 34556666777887766533 233333332 3479999888889998887763 44544
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHH
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIR 141 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~K-----P~~~eeL~~aI~~vlr 141 (524)
.....|=+-+--..+.+.++.++||+..+.= --++.+++..++...+
T Consensus 167 yp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 167 YPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVE 218 (224)
T ss_pred CCCceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHh
Confidence 4456666777778889999999999987653 3455666666655544
No 306
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=38.93 E-value=1.8e+02 Score=30.17 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=49.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHhcCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDG--FKLLELVGLEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdG--leLLe~Lr~~~diP 98 (524)
+.+|+-||-++...+..++-++..+.. +. ...+..+.... ....+|+|++| |-..| -++++.+.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 358999999999999988888776653 33 44566554322 12359999999 33444 35666664322234
Q ss_pred EEEEecCC
Q 009824 99 VVMLSAYS 106 (524)
Q Consensus 99 VIvlTa~~ 106 (524)
||+++...
T Consensus 269 ivyvsc~p 276 (315)
T PRK03522 269 ILYSSCNA 276 (315)
T ss_pred EEEEECCc
Confidence 66655544
No 307
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=38.68 E-value=81 Score=29.33 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=45.4
Q ss_pred CccEEEEEeCCHHH---------HHHHHHHHHhC-CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 22 IGMRVLAVDDDQTC---------LKILEKFLREC-QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 22 ~~irVLIVDDdp~~---------~~~L~~~L~~~-gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
..++|.|||.|... -+.+.+.|+.. .+.+. ..+..+|.+.++..+ ++.+|. .|..=.-+++...
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~-~~~~~ea~~~l~~g~--~~~~iv---IP~~Fs~~l~~~~ 115 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWH-FVSAKEAEKGLADGK--YYMVIT---IPEDFSENATSLL 115 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceE-EcCHHHHHHHhHcCc--EEEEEE---ECcchhHHHHhhc
Confidence 46789999988765 35555556543 44544 348899999998654 776653 3433222333322
Q ss_pred h-cCCCCcEEEEecCC
Q 009824 92 G-LEMDLPVVMLSAYS 106 (524)
Q Consensus 92 r-~~~diPVIvlTa~~ 106 (524)
+ ..+.+.|.+.+...
T Consensus 116 ~~~~~~~~i~~~~~~~ 131 (164)
T TIGR03061 116 DDQPKKAQLTYKTNDA 131 (164)
T ss_pred cCCCCccEEEEEECCC
Confidence 1 23345555555544
No 308
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=38.54 E-value=1.2e+02 Score=31.57 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=53.3
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--eCCCCCC-----CHHHHHHHHhc
Q 009824 22 IGMRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS--DVYMPDM-----DGFKLLELVGL 93 (524)
Q Consensus 22 ~~irVLIVDDdp~~~-~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl--Di~MPdm-----dGleLLe~Lr~ 93 (524)
...+|.|+|..|... ..+...|.+.|..|+...+..-+.-+ . ++|.||+ |..+.++ -|--.+..+..
T Consensus 140 ~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m-~----~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak 214 (301)
T TIGR00511 140 KDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFM-K----EVDHVVVGADAITANGALINKIGTSQLALAAR 214 (301)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEEEHHhHHHHHHHHH
Confidence 357888888888653 45667777789998877766555433 2 2788887 4445544 35555555555
Q ss_pred CCCCcEEEEecCC
Q 009824 94 EMDLPVVMLSAYS 106 (524)
Q Consensus 94 ~~diPVIvlTa~~ 106 (524)
...+||++++...
T Consensus 215 ~~~vPv~V~a~~~ 227 (301)
T TIGR00511 215 EARVPFMVAAETY 227 (301)
T ss_pred HhCCCEEEEcccc
Confidence 6689999987643
No 309
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.49 E-value=2e+02 Score=27.56 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=49.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLREC--QYEVTVTN------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~--gy~V~~a~------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~ 93 (524)
.+++|.++...+.+.+.+.+.|++. +.+|+.+. ..++.++.+.+. .+|+|++-+-+|...-+ +...+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~~--~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEIW--MRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHHH--HHHhHH
Confidence 3579999999999999999999763 45555331 123345556554 49999999999977643 333433
Q ss_pred CCCCcEEE
Q 009824 94 EMDLPVVM 101 (524)
Q Consensus 94 ~~diPVIv 101 (524)
....+|++
T Consensus 123 ~~~~~v~~ 130 (177)
T TIGR00696 123 LKPDAVMI 130 (177)
T ss_pred hCCCcEEE
Confidence 32344443
No 310
>PLN02335 anthranilate synthase
Probab=38.27 E-value=40 Score=33.37 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=44.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHhcCCCceEEEEe-CCC-CCCCHHHHHHHHh-cCCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA-ITALKMLRENRNNFDLVISD-VYM-PDMDGFKLLELVG-LEMDL 97 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg-~eALe~L~e~~~~pDLVIlD-i~M-PdmdGleLLe~Lr-~~~di 97 (524)
...+|||||-....-..|.+.|++.|+++.++... .++ +.+... .||.||+- ==| |...|. .++.++ ....+
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~--~~d~iVisgGPg~p~d~~~-~~~~~~~~~~~~ 92 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTV-EELKRK--NPRGVLISPGPGTPQDSGI-SLQTVLELGPLV 92 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCH-HHHHhc--CCCEEEEcCCCCChhhccc-hHHHHHHhCCCC
Confidence 34689999977777778999999989888765432 222 222222 37766552 111 222221 233343 23467
Q ss_pred cEEEEe
Q 009824 98 PVVMLS 103 (524)
Q Consensus 98 PVIvlT 103 (524)
||+-+.
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 876553
No 311
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=38.25 E-value=2.8e+02 Score=26.95 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=36.6
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 83 DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 83 dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
-|..+++.+. ..+|||+ |.... ..+.+..|..+++..+-+.+++..++..++.
T Consensus 276 ~~~~~~Ea~~--~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 276 LPRVLLEAMA--MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred cchHHHHHHH--cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 3566666663 3578876 33332 2344566788999999999999999988654
No 312
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=38.19 E-value=1.3e+02 Score=31.42 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=53.4
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--CCCCCC-----CHHHHHHHHhc
Q 009824 22 IGMRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD--VYMPDM-----DGFKLLELVGL 93 (524)
Q Consensus 22 ~~irVLIVDDdp~~~-~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlD--i~MPdm-----dGleLLe~Lr~ 93 (524)
...+|.|+|..|... ..+...|.+.|..|+...+..-+.-+ . ++|.||+. ..+.++ -|--.+..+..
T Consensus 145 k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m-~----~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak 219 (310)
T PRK08535 145 KDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFM-K----DVDKVVVGADAITANGAVINKIGTSQIALAAH 219 (310)
T ss_pred CeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEEeHHhHHHHHHHHH
Confidence 347888888888643 45667777889999877665555433 2 27888874 445544 35555555555
Q ss_pred CCCCcEEEEecCC
Q 009824 94 EMDLPVVMLSAYS 106 (524)
Q Consensus 94 ~~diPVIvlTa~~ 106 (524)
...+||++++...
T Consensus 220 ~~~vPv~V~a~~~ 232 (310)
T PRK08535 220 EARVPFMVAAETY 232 (310)
T ss_pred HhCCCEEEecccc
Confidence 6789999987643
No 313
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.14 E-value=2.5e+02 Score=27.74 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=42.8
Q ss_pred EECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 009824 52 VTNRAITALKMLREN-RNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRM 129 (524)
Q Consensus 52 ~a~sg~eALe~L~e~-~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~ 129 (524)
...+.+++++..+.- ...+.+ +.+.|-.-+.++.++.++. .+++. |=.-.-.+.+.+.+++++||...+..-++.
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~--iEit~~t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~FivsP~~~~ 91 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRV--LEVTLRTPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQFIVSPGLTP 91 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCE--EEEeCCCccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEECCCCCH
Confidence 444555555544321 112443 3334444557777777753 34432 333345577889999999997665544544
Q ss_pred HHHHH
Q 009824 130 EELKN 134 (524)
Q Consensus 130 eeL~~ 134 (524)
++..
T Consensus 92 -~v~~ 95 (204)
T TIGR01182 92 -ELAK 95 (204)
T ss_pred -HHHH
Confidence 4433
No 314
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=37.89 E-value=2.9e+02 Score=27.77 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHH-h--cCCCCcEEEEecC
Q 009824 36 LKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELV-G--LEMDLPVVMLSAY 105 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLLe~L-r--~~~diPVIvlTa~ 105 (524)
...+-..|+..|+.+. -+.+|-..+..|.+.+ ||.|=+|-.+- +.....+++.| . ..-.+.|| .-+-
T Consensus 138 ~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEGV 214 (256)
T COG2200 138 ALALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEGV 214 (256)
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE-Eeec
Confidence 3344455667788765 5778888899888755 99999987543 22344556544 2 23345555 4556
Q ss_pred CCHHHHHHHHhcCCcE----EEeCCCCHHHHHHHHH
Q 009824 106 SDTKLVMKGINHGACD----YLLKPVRMEELKNTWQ 137 (524)
Q Consensus 106 ~d~~~~~~al~~GA~d----YL~KP~~~eeL~~aI~ 137 (524)
...+......+.|++. |+.||...+++...+.
T Consensus 215 Et~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 215 ETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred CCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 6677777777899883 6889998877665543
No 315
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=37.87 E-value=2.7e+02 Score=27.19 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|..+++.+. ..+|||+. .... ..+.+..+..+++.++-+.+++..++..++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 445555553 35787753 3333 34556778888999999999999999988764
No 316
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.79 E-value=2.6e+02 Score=33.19 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=59.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCC-CHHHHHHHHh--cCC
Q 009824 24 MRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MPDM-DGFKLLELVG--LEM 95 (524)
Q Consensus 24 irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~--MPdm-dGleLLe~Lr--~~~ 95 (524)
-+|.+|+-|.. ..+.++.+-+..+..+..+.+..+..+.+++. ..+|+||+|.- ++.. .-.+.+..+. ..+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 47888777754 23556666666777777777888877777654 36899999972 2211 1233333332 234
Q ss_pred CCcEEEEecCCCHHHHH---HHHhc----CCcEEE-eCC
Q 009824 96 DLPVVMLSAYSDTKLVM---KGINH----GACDYL-LKP 126 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~---~al~~----GA~dYL-~KP 126 (524)
.-.++|+++....+... +.++. +.+.+| +|=
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEecc
Confidence 44567777766554433 44432 566654 453
No 317
>PRK13566 anthranilate synthase; Provisional
Probab=37.78 E-value=46 Score=38.94 Aligned_cols=78 Identities=27% Similarity=0.343 Sum_probs=48.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--CCCCCC-CHHHHHHHHhcCCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD--VYMPDM-DGFKLLELVGLEMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlD--i~MPdm-dGleLLe~Lr~~~diP 98 (524)
.+++|||||........|.++|++.|++|+.+..... .+.+.. ..||.||+= -.-|.. +-.++++.+. ..++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAAL-ARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHH-HCCCc
Confidence 4689999999988899999999999999886654321 122222 248887761 111211 2233444331 24688
Q ss_pred EEEEe
Q 009824 99 VVMLS 103 (524)
Q Consensus 99 VIvlT 103 (524)
|+-+.
T Consensus 601 ILGIC 605 (720)
T PRK13566 601 IFGVC 605 (720)
T ss_pred EEEEe
Confidence 76554
No 318
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=37.75 E-value=1.2e+02 Score=33.35 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.+..+++ ..+|+|.+|..-.. ..-++.+++++.. +++|||+ ..-.+.+.+..++++||+.+.+
T Consensus 227 ~r~~~L~~---aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~v 292 (450)
T TIGR01302 227 ERAEALVK---AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRV 292 (450)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEE
Confidence 44444443 24899999985543 3456677888654 7888887 4556778889999999988743
No 319
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=37.61 E-value=3.2e+02 Score=27.91 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=46.1
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH-H---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH---
Q 009824 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTN---RA-I---TALKMLRENRNNFDLVISDVYMPDMDGFKLLE--- 89 (524)
Q Consensus 23 ~irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~---sg-~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe--- 89 (524)
+.+|++||-|.. ..+.++.+.+..+..+.... +. . ++++.+.. ..+|+||+|.-=-....-.+++
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~G~~~~d~~~~~el~ 177 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTAGRLQNKVNLMDELK 177 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCCCCCcchHHHHHHHH
Confidence 468999997753 23455556666676655332 21 2 23333322 3599999998321111222222
Q ss_pred HH-h-c------CCCCcEEEEecCCCHHHHHHH
Q 009824 90 LV-G-L------EMDLPVVMLSAYSDTKLVMKG 114 (524)
Q Consensus 90 ~L-r-~------~~diPVIvlTa~~d~~~~~~a 114 (524)
.+ + . .++-.++++.+....+....+
T Consensus 178 ~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~ 210 (272)
T TIGR00064 178 KIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA 210 (272)
T ss_pred HHHHHHhcccCCCCceEEEEEECCCCHHHHHHH
Confidence 22 1 1 145567777776655444333
No 320
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=37.60 E-value=1.7e+02 Score=29.39 Aligned_cols=71 Identities=27% Similarity=0.263 Sum_probs=42.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHhcCCCCcE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQY----EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF-KLLELVGLEMDLPV 99 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy----~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl-eLLe~Lr~~~diPV 99 (524)
.|.|++|+.. +......|...+. +++.....++++..+. ..|.+++|... .|-. ++++.++..+.--|
T Consensus 72 ~vCIvp~~~~-~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~~~~~GaV 144 (218)
T PF07279_consen 72 HVCIVPDEQS-LSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAKLSPRGAV 144 (218)
T ss_pred EEEEcCChhh-HHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhccCCCceE
Confidence 3555555544 5556666655543 3333344566665542 48999999984 4444 67777765555455
Q ss_pred EEE
Q 009824 100 VML 102 (524)
Q Consensus 100 Ivl 102 (524)
|+.
T Consensus 145 VV~ 147 (218)
T PF07279_consen 145 VVC 147 (218)
T ss_pred EEE
Confidence 544
No 321
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=37.29 E-value=2.1e+02 Score=27.88 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=37.5
Q ss_pred CHHHH---HHHHHHHHhCCCeEEEEC--CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 32 DQTCL---KILEKFLRECQYEVTVTN--RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 32 dp~~~---~~L~~~L~~~gy~V~~a~--sg~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
++... ..+++.+++.||++..+. +.+ +.++.+... .+|-||+ +|....-.+.+.++..+.+|||++.
T Consensus 13 ~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii---~~~~~~~~~~~~~~~~~~ipvv~~~ 87 (260)
T cd06304 13 KSFNQSAYEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQ--GYDLIFG---VGFGFMDAVEKVAKEYPDVKFAIID 87 (260)
T ss_pred chHHHHHHHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHc--CCCEEEE---CCcchhHHHHHHHHHCCCCEEEEec
Confidence 45555 445566677899987543 222 344444443 3886665 2322122343444444578998886
Q ss_pred cC
Q 009824 104 AY 105 (524)
Q Consensus 104 a~ 105 (524)
..
T Consensus 88 ~~ 89 (260)
T cd06304 88 GV 89 (260)
T ss_pred Cc
Confidence 54
No 322
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=37.23 E-value=2.4e+02 Score=29.69 Aligned_cols=99 Identities=16% Similarity=0.009 Sum_probs=59.4
Q ss_pred EEEEeCCHHHHHHHHHHH-------HhCCC--eE-EEECCHHHHHHHHHh---cCCCceEEEEeCC--CCCC---CHHHH
Q 009824 26 VLAVDDDQTCLKILEKFL-------RECQY--EV-TVTNRAITALKMLRE---NRNNFDLVISDVY--MPDM---DGFKL 87 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L-------~~~gy--~V-~~a~sg~eALe~L~e---~~~~pDLVIlDi~--MPdm---dGleL 87 (524)
|||=|.|-...-.+...+ +..++ .| +.+.+.+++.+++.. .+..+|+|++|-+ -|+. +--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 677666654443333333 22222 33 378889999998861 1124899999975 2321 32233
Q ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 88 LELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 88 Le~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-+.+........|-.|+.-+.+.+.+....|++..-+
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~ 289 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISS 289 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3333322223347888999999999999999876543
No 323
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=37.17 E-value=2.3e+02 Score=28.45 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 54 NRAITALKMLRENRNNFDLVISDVYMPD---MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pDLVIlDi~MPd---mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.+..+..+.+.+. +--.++++|+.-.+ ..-+++++.+....++||++--+-.+.+.+.+++..||+..++-
T Consensus 30 ~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4777777777653 22358888987543 23456677776666899999999999999999999999887764
No 324
>CHL00101 trpG anthranilate synthase component 2
Probab=37.08 E-value=44 Score=32.08 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=33.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|||||-....-..|.+.|++.|+++..+......++.+... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999999888665432122222222 3777664
No 325
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.06 E-value=4.7e+02 Score=26.72 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=58.6
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEEE--E-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCH---------HHHHHH
Q 009824 24 MRVLAVDDD-QTCLKILEKFLRECQYEVTV--T-NRAITALKMLRENRNNFDLVISDVYMPDMDG---------FKLLEL 90 (524)
Q Consensus 24 irVLIVDDd-p~~~~~L~~~L~~~gy~V~~--a-~sg~eALe~L~e~~~~pDLVIlDi~MPdmdG---------leLLe~ 90 (524)
+.-++|-|- ..-...+...+++.|...+. + .+..+-++.+.+....|=.++. .++..| .+++++
T Consensus 120 vdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~~ 196 (263)
T CHL00200 120 VKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIET 196 (263)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHHH
Confidence 333344443 33444555566666765442 1 2334555554444322323323 344433 234556
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 91 Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
+|...++||++=-+-.+.+.+.++.++||++.++-.
T Consensus 197 ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 197 IKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 666678999986677788999999999999999864
No 326
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=37.06 E-value=5.3e+02 Score=27.31 Aligned_cols=98 Identities=9% Similarity=0.091 Sum_probs=61.2
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCC----------CC-CCC--H
Q 009824 25 RVLAVDDD----QTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVY----------MP-DMD--G 84 (524)
Q Consensus 25 rVLIVDDd----p~~~~~L~~~L~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~----------MP-dmd--G 84 (524)
.++++|-- ..+.+.++.+-+... ..|. .+.+.+.|..+++. ..|.|.+-+. +. +.- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 56676652 444445555444433 2233 24577777777653 3677664421 11 111 3
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+..+..++...++|||.-.+-.....+.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44555555556799999999999999999999999998763
No 327
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=36.67 E-value=49 Score=31.96 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
-+.+++.+++.+ ||.|=+ ||+ ---+++++++..-++|||.=---.+.+.+.+++++||.+.=
T Consensus 106 l~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 106 LETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp HHHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 355677777654 998754 788 55567777776678998866666788999999999998753
No 328
>PRK05670 anthranilate synthase component II; Provisional
Probab=36.67 E-value=48 Score=31.61 Aligned_cols=48 Identities=23% Similarity=0.253 Sum_probs=33.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|||||-....-..+.++|++.|+++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999999887654321111222222 2786666
No 329
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=36.49 E-value=88 Score=27.34 Aligned_cols=25 Identities=20% Similarity=0.103 Sum_probs=13.9
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEEE
Q 009824 29 VDDDQTCLKILEKFLRECQYEVTVT 53 (524)
Q Consensus 29 VDDdp~~~~~L~~~L~~~gy~V~~a 53 (524)
-|.+......+...|...||++...
T Consensus 7 ~d~~K~~~~~~a~~l~~~G~~i~AT 31 (112)
T cd00532 7 SDHVKAMLVDLAPKLSSDGFPLFAT 31 (112)
T ss_pred EcccHHHHHHHHHHHHHCCCEEEEC
Confidence 3334444445555566677877533
No 330
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=36.39 E-value=2.9e+02 Score=29.50 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=50.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.+.+++.++... .+|.|++--.-|. .-|++.++.+.....+||+.+-+-. .+.+.+.+.+|++++-+
T Consensus 246 S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~Ga~gVAv 321 (347)
T PRK02615 246 STTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAGAKRVAV 321 (347)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCcEEEE
Confidence 66788888777653 3898887544432 2478888888666679999887664 77888889999998754
No 331
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=36.36 E-value=4.4e+02 Score=26.73 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCeEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009824 36 LKILEKFLRECQYEVTV---T----NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~---a----~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa 104 (524)
...++..+++.|.+|+. + .+....+..++.. .+|+|++.. .+.+...+++.++ ...+.+++..+.
T Consensus 158 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 158 AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAG--HFPDAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECC--cchhHHHHHHHHHHcCCCCCEEEEec
Confidence 44556666777887752 1 2334455555443 488888754 3345666676664 344556665543
No 332
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.36 E-value=2.7e+02 Score=28.88 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=58.5
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHH-------HHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 25 RVLAV--DDDQTCL---KILEKFLRECQYEVTVTNRAITALK-------MLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 25 rVLIV--DDdp~~~---~~L~~~L~~~gy~V~~a~sg~eALe-------~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
+|+|| -+.+... ..+..+|++.|+++.........+. ........+|+||+ -|.||. +++..+
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHHH
Confidence 47777 3334444 4555667777888876543322221 00111124677776 488985 444333
Q ss_pred --cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 93 --LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 93 --~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
...++||+=+- .|=.+||. .+..+++..+++.++.+
T Consensus 82 ~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 82 VLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred HhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcC
Confidence 23467877553 35567777 67789999999988765
No 333
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=36.18 E-value=1.9e+02 Score=28.66 Aligned_cols=81 Identities=22% Similarity=0.158 Sum_probs=51.1
Q ss_pred HHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeC-CC--CCCCHHHHHHHHh----c-CCCCcEEEEecCCCHHHH
Q 009824 42 FLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDV-YM--PDMDGFKLLELVG----L-EMDLPVVMLSAYSDTKLV 111 (524)
Q Consensus 42 ~L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi-~M--PdmdGleLLe~Lr----~-~~diPVIvlTa~~d~~~~ 111 (524)
.|+..|..| +.+.+..+|+...+.. .|.|=.=+ +| -+.||+++++.+. . ..+++ |+..+..+...+
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v 171 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHV 171 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHH
Confidence 355556654 4567788887776543 34322111 11 2568999887552 2 34666 556667788889
Q ss_pred HHHHhcCCcEEEeCC
Q 009824 112 MKGINHGACDYLLKP 126 (524)
Q Consensus 112 ~~al~~GA~dYL~KP 126 (524)
.++...|++.+-.-|
T Consensus 172 ~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 172 LEAALIGADIATMPL 186 (213)
T ss_pred HHHHHcCCCEEEcCH
Confidence 999999998876654
No 334
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=36.12 E-value=2.1e+02 Score=27.53 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=35.9
Q ss_pred CCceEEEEeCCCCCC---C----HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC-CcEEEe
Q 009824 68 NNFDLVISDVYMPDM---D----GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG-ACDYLL 124 (524)
Q Consensus 68 ~~pDLVIlDi~MPdm---d----GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~G-A~dYL~ 124 (524)
...|.+++|..-++. + ++++++.+. ..+|+++..+- +++.+.++++.| ++.+-+
T Consensus 119 ~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv 180 (203)
T cd00405 119 GEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDV 180 (203)
T ss_pred ccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEc
Confidence 357899999865532 3 345555444 46898877665 778888888887 665533
No 335
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.09 E-value=2.7e+02 Score=28.83 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC--C
Q 009824 25 RVLAVDDDQTCLKILEKFLR----ECQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE--M 95 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~----~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~--~ 95 (524)
.|||=|.|-...-.+...++ ..+ ..| +.+.+.+++.+++.. .+|.|.+|- =|.+.++++... .
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 47777777555544444443 233 233 478899999888753 489999973 244555544322 2
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+| |+.++--+.+.+.+..+.||+.+-+
T Consensus 232 ~i~-i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIV-TEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred Cce-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 233 4455666888899999999988754
No 336
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=36.08 E-value=3e+02 Score=29.93 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCCCCC
Q 009824 200 LHTKFIGAVNLLGLDKA 216 (524)
Q Consensus 200 Lh~kflaavn~LGl~~a 216 (524)
-|-.++.....||+-+.
T Consensus 243 g~~~~i~~L~~lGll~~ 259 (389)
T COG1748 243 GHLEVIKALRDLGLLSR 259 (389)
T ss_pred cHHHHHHHHHHcCCCcc
Confidence 45666666666776554
No 337
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=36.01 E-value=3.7e+02 Score=27.86 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=56.7
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE-E-----C---CHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcCC
Q 009824 30 DDDQTCLKILEKFLRECQYEVTV-T-----N---RAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGLEM 95 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~-a-----~---sg~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLLe~Lr~~~ 95 (524)
.+-..+.++++.+-+..++.|.. . . +..+..+.+.+. ..|.|.+.-..+ +.--++.++.++...
T Consensus 114 ~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~ 191 (319)
T TIGR00737 114 RDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQAV 191 (319)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHHcC
Confidence 34445555566554455554432 1 1 233444445443 367776643322 112366777777667
Q ss_pred CCcEEEEecCCCHHHHHHHH-hcCCcEEEe
Q 009824 96 DLPVVMLSAYSDTKLVMKGI-NHGACDYLL 124 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al-~~GA~dYL~ 124 (524)
++|||...+-.+.+.+.+++ ..||+....
T Consensus 192 ~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 192 RIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 79999999999999999999 567877654
No 338
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=36.00 E-value=2.5e+02 Score=28.42 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=37.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQ-----YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~g-----y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
..+|.+||-++.+.+..++.+...+ -++. ...++.+.++. ....+|+||+|.--|.
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~---~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD---TENTFDVIIVDSTDPV 157 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---CCCCccEEEEeCCCCC
Confidence 3579999999999998888875421 1232 33555555443 2346999999986543
No 339
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=35.94 E-value=3.9e+02 Score=26.07 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=39.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.|++++-... +.-|..+++.+. ..+|||+ +.... ..+.+.. .+++.++-+.+++..++..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a--~g~PvI~-~~~~~---~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA--CGLPVVA-TDVGD---NAELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh--cCCCEEE-cCCCC---hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4666654333 333566677664 3578876 33332 2233333 67899999999999999988754
No 340
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=35.90 E-value=4.6e+02 Score=26.90 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=60.2
Q ss_pred ccEEEEEeCCH-------HHHHHHHHHHHh-CCC--eEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 009824 23 GMRVLAVDDDQ-------TCLKILEKFLRE-CQY--EVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (524)
Q Consensus 23 ~irVLIVDDdp-------~~~~~L~~~L~~-~gy--~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~ 90 (524)
.++++++.+.+ .....++...++ .+. .|... -..++..+.+.. .|++++-... +.-|+.+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~-E~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSN-EHFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCc-CCCCchHHHH
Confidence 46667776532 223445555554 333 33332 223333444432 5777764332 2235666666
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 91 Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+. ..+|||..- ... ..+.+..|..+|+..+ +.+++..++..++..
T Consensus 320 ma--~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 MY--AGKPVIACN-SGG---PLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HH--cCCCEEEEC-CCC---cHHHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 63 357887643 322 2344556778899877 899999888887653
No 341
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.85 E-value=1.4e+02 Score=29.81 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCcEEEEe-----cCCCHHHHHHHHhcCCcEEEeC--CCC-HHHHHHHHHHH
Q 009824 86 KLLELVGLEMDLPVVMLS-----AYSDTKLVMKGINHGACDYLLK--PVR-MEELKNTWQHV 139 (524)
Q Consensus 86 eLLe~Lr~~~diPVIvlT-----a~~d~~~~~~al~~GA~dYL~K--P~~-~eeL~~aI~~v 139 (524)
++++.++...++|+++++ ..+-...+..+.++|++.++.- |+. .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 355666666789987664 2233344777889999999985 343 35555555544
No 342
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=35.66 E-value=55 Score=33.17 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=43.3
Q ss_pred ccEEEEEeCCHHHHH-HHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCC-----CHHHHHHHHhcC
Q 009824 23 GMRVLAVDDDQTCLK-ILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MPDM-----DGFKLLELVGLE 94 (524)
Q Consensus 23 ~irVLIVDDdp~~~~-~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~--MPdm-----dGleLLe~Lr~~ 94 (524)
.++|+|+|..|...- .+...|.+.|+.|+...+..-+.- +.. .+|.||+... ++++ -|--.+..+...
T Consensus 133 ~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~~-m~~---~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~ 208 (282)
T PF01008_consen 133 KFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGYV-MPR---DVDKVLIGADAVLANGGVVNKVGTLQLALAAKE 208 (282)
T ss_dssp EEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHHH-HHC---TESEEEEE-SEEETTS-EEEETTHHHHHHHHHH
T ss_pred eEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHHH-HHH---hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHh
Confidence 467888888875432 355556667888887776554433 322 3888887554 4443 355555555445
Q ss_pred CCCcEEEEecC
Q 009824 95 MDLPVVMLSAY 105 (524)
Q Consensus 95 ~diPVIvlTa~ 105 (524)
.++||++++..
T Consensus 209 ~~vPv~v~~~~ 219 (282)
T PF01008_consen 209 FNVPVYVLAES 219 (282)
T ss_dssp TT-EEEEE--G
T ss_pred hCCCEEEEccc
Confidence 78999988754
No 343
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.52 E-value=2.9e+02 Score=23.72 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=48.3
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 25 RVLAVDD--DQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 25 rVLIVDD--dp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
+|+++-. .......+...|...|+.+....+............ .-| +|++...--..+-.++++.++. ..+++|+
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~~g~~~~~~~~~~~a~~-~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLT-PGDVVIAISFSGETKETVEAAEIAKE-RGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCC-CCCEEEEEeCCCCCHHHHHHHHHHHH-cCCeEEE
Confidence 3444433 344555677777788888887777666554443222 223 3334443323344555655543 4689999
Q ss_pred EecCCCHHH
Q 009824 102 LSAYSDTKL 110 (524)
Q Consensus 102 lTa~~d~~~ 110 (524)
+|+..+...
T Consensus 93 iT~~~~~~l 101 (139)
T cd05013 93 ITDSANSPL 101 (139)
T ss_pred EcCCCCChh
Confidence 999877543
No 344
>PRK00654 glgA glycogen synthase; Provisional
Probab=35.51 E-value=4e+02 Score=28.94 Aligned_cols=108 Identities=8% Similarity=0.069 Sum_probs=58.8
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 24 MRVLAVDDD-QTCLKILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDd-p~~~~~L~~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
++++|+.+- +.....++.+.++.+-++.. ..+.+.+-.++. ..|++++=-. -+.=|+.+++.+. ..+|+|
T Consensus 312 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS~-~E~~gl~~lEAma--~G~p~V 384 (466)
T PRK00654 312 GQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPSR-FEPCGLTQLYALR--YGTLPI 384 (466)
T ss_pred CEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCCC-CCCchHHHHHHHH--CCCCEE
Confidence 556666553 33445555555554433332 222222222322 2566665322 2345666666653 346666
Q ss_pred EEecCCCHHHHHHHHhcC------CcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHG------ACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~G------A~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+ |..+... +.+..| .++|+.+|-+.++|..++..++..
T Consensus 385 ~-~~~gG~~---e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~ 428 (466)
T PRK00654 385 V-RRTGGLA---DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALEL 428 (466)
T ss_pred E-eCCCCcc---ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 5 3333222 223344 789999999999999999988764
No 345
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.44 E-value=2.2e+02 Score=29.12 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--C--CCCcEEEEecCCCHHHH
Q 009824 36 LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--E--MDLPVVMLSAYSDTKLV 111 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~--~diPVIvlTa~~d~~~~ 111 (524)
...+..+|+..|+++. . ..+|+||+ -|.||. +|+.++. . .++||+=+-
T Consensus 17 ~~~l~~~l~~~g~~~~-------------~--~~~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------- 68 (265)
T PRK04885 17 ASKLKKYLKDFGFILD-------------E--KNPDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------- 68 (265)
T ss_pred HHHHHHHHHHcCCccC-------------C--cCCCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe--------
Confidence 4445556666676631 1 23788887 488995 4444432 2 578877543
Q ss_pred HHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 112 MKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 112 ~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.|-.+||. .++.+++...+..++.+
T Consensus 69 -----~G~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 69 -----TGHLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred -----CCCceecc-cCCHHHHHHHHHHHHcC
Confidence 57789999 68889999899888765
No 346
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=35.33 E-value=2.7e+02 Score=29.93 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC----CHHHHHHHHh-cCCCCcEEEEecCCCH
Q 009824 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM----DGFKLLELVG-LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm----dGleLLe~Lr-~~~diPVIvlTa~~d~ 108 (524)
..-+.+...|...||+.+.. ..++|+|++...-.-. ..++.++.++ ..++++||+--.+. .
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a-~ 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYA-Q 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcc-c
Confidence 34466778888889986521 1248999998654433 3677777775 44566655444333 2
Q ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 109 KLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 109 ~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
..-.++.+....|++.-+-....+...++..
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3333445666778888887777777766644
No 347
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=35.19 E-value=39 Score=33.84 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=69.4
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 24 MRVLAVDDD-QTCLKILEKFLRECQYEVT---VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 24 irVLIVDDd-p~~~~~L~~~L~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
.+|-.|-.. ....+.|.+.|.++||+|. .+++...|...+++++-.|-+++-|-.|++.+|++. ..|++-|
T Consensus 40 ~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT-----s~pn~VV 114 (262)
T KOG3040|consen 40 VKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT-----SDPNCVV 114 (262)
T ss_pred ceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC-----CCCCeEE
Confidence 445555544 4556678888889999886 577888899999988778999999999999999642 3566666
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|-+. .+-|+.+.|-++.+-++..+
T Consensus 115 igla--------------------pe~F~y~~ln~AFrvL~e~~ 138 (262)
T KOG3040|consen 115 IGLA--------------------PEGFSYQRLNRAFRVLLEMK 138 (262)
T ss_pred EecC--------------------cccccHHHHHHHHHHHHcCC
Confidence 5433 23577788888888777654
No 348
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=35.05 E-value=4.7e+02 Score=26.62 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=63.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQ--YEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDL 97 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~g--y~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~di 97 (524)
.+||.||.=-..........+...+ .+++.. .+.+.+.+...+.. +.-+..|+ -+.+.. ..|+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~~----------~~ll~~~~iD~ 70 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTDL----------EELLADPDIDA 70 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCCH----------HHHhcCCCCCE
Confidence 4788888866555554555555543 355533 34444444443321 22122222 123332 2455
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
-+|........+.+.+|+++|..=|+-||+ +.+|....++.+-+
T Consensus 71 V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 71 VYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred EEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 555555667778899999999999999995 56777766665544
No 349
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=34.95 E-value=1.9e+02 Score=30.82 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=40.6
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 009824 24 MRVLAVDDDQT-----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 24 irVLIVDDdp~-----~~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe 89 (524)
-|+|||-|... ..+.+...|++.+.++..+. +..++.+.+++. .+|+||- .-|++-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE--GCDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 57888888654 33567777877777665442 345677777765 4998874 34555566555
Q ss_pred HH
Q 009824 90 LV 91 (524)
Q Consensus 90 ~L 91 (524)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 43
No 350
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=34.84 E-value=1e+02 Score=30.35 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=49.2
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 47 QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 47 gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
++.|....+.+++.+++.. ..|+|-+|...-. .+--++++.++... .++|..-...+....|.++|+ ||+.
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~-D~I~ 117 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRPETLEELIREIKEKY---QLVMADISTLEEAINAAELGF-DIIG 117 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-SS-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT--SEEE
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCCcCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCC-CEEE
Confidence 5678888889999888864 3899999997622 56677888887655 777888899999999999995 4554
No 351
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=34.82 E-value=2.2e+02 Score=27.67 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCC--CC-CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 54 NRAITALKMLRENRNNFDLVISDVYM--PD-MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pDLVIlDi~M--Pd-mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
.+..+..+.+.+.. -=.+.++|+.- .+ ..-+++++.+.....+||++=-+-.+.+.+.+++..||+..+.--
T Consensus 30 ~~~~~~a~~~~~~g-~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 30 DDPVAQAKAWEDQG-AKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 46777777766532 12477888742 12 244777887766678999998888999999999999998877643
No 352
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=34.57 E-value=2.2e+02 Score=28.04 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCeEEEECC--H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEec
Q 009824 36 LKILEKFLRECQYEVTVTNR--A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA 104 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~a~s--g---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa 104 (524)
...+++.+++.||.+..+.. . .+.++.+... .+|-||+-- +..+ -...+.++...++|+|++..
T Consensus 21 ~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~--~vdgiI~~~--~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 21 WEGLERAAKELGIEYKYVESKSDADYEPNLEQLADA--GYDLIVGVG--FLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhC--CCCEEEEcC--cchH-HHHHHHHHHCCCCEEEEEec
Confidence 34556667778999876532 2 2345545443 488777631 1222 23444444445789998854
No 353
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=34.29 E-value=5.1e+02 Score=26.30 Aligned_cols=57 Identities=11% Similarity=0.236 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe------CCCCHHHHHHHHHHHHH
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL------KPVRMEELKNTWQHVIR 141 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~------KP~~~eeL~~aI~~vlr 141 (524)
+++++.++...++|||...+-.+.+.+.+++.+||+.... -|.-..++..-+...++
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHH
Confidence 4677777665689999999999999999999999876532 34434444444444444
No 354
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=34.27 E-value=38 Score=33.09 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred CCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhh
Q 009824 228 EGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIG 268 (524)
Q Consensus 228 ~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~a 268 (524)
.|+|..||+.++.+...|+.++...++.+|+ .+..++.++|
T Consensus 147 qGkTnKEIAe~L~IS~rTVkth~srImkKLgV~SRaELV~~A 188 (198)
T PRK15201 147 SGYHLSETAALLSLSEEQTKSLRRSIMRKLHVKTEQQFLKYI 188 (198)
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4555555555555555554445555555555 3334454443
No 355
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=34.22 E-value=2.6e+02 Score=30.01 Aligned_cols=63 Identities=27% Similarity=0.273 Sum_probs=40.8
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 009824 24 MRVLAVDDDQT----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (524)
Q Consensus 24 irVLIVDDdp~----~~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~ 90 (524)
-|+|||-|... ..+.+...|++.|..+..+. +..++.+.+++. .+|+||- .-|++-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--NCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc--CCCEEEE---eCCchHHHHHHH
Confidence 48999988633 34567778887777665443 345677777765 4999874 345666666554
Q ss_pred H
Q 009824 91 V 91 (524)
Q Consensus 91 L 91 (524)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 4
No 356
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.19 E-value=4.8e+02 Score=26.94 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=15.9
Q ss_pred cEEEeCCCCHHHHHHHHHHHHH
Q 009824 120 CDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 120 ~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..++.+..+.++|...+..++.
T Consensus 319 ~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 319 PELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred hhhcCCCCCHHHHHHHHHHHhc
Confidence 4566677788888887777764
No 357
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=34.16 E-value=1.8e+02 Score=31.10 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=40.3
Q ss_pred CceEEEEeCCCCCCC-HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 69 NFDLVISDVYMPDMD-GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 69 ~pDLVIlDi~MPdmd-GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.+|+|++|+---... =++.+++||....-+.|+--.-...+.+..++++||+...+=
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 589999999654433 356778887543334444444778889999999999998653
No 358
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.15 E-value=1.1e+02 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=32.6
Q ss_pred CCCcEEEEec------CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Q 009824 95 MDLPVVMLSA------YSDTKLVMKGINHGACDYLLKPVRMEELKNT 135 (524)
Q Consensus 95 ~diPVIvlTa------~~d~~~~~~al~~GA~dYL~KP~~~eeL~~a 135 (524)
-.+|||+++= +++..++..+.++||++||.--+.++|-...
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
Confidence 4689999984 4566788889999999999988887775543
No 359
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=34.12 E-value=2.8e+02 Score=28.44 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHH---H-hCC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hcC-C
Q 009824 25 RVLAVDDDQTCLKILEKFL---R-ECQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV-GLE-M 95 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L---~-~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L-r~~-~ 95 (524)
.|||.|+|-...-.+...+ + ..+ ..+ +.+.+.+++.+++.. .+|.|.+|-.- .+.++++ +.. .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~-----~e~l~~~~~~~~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMS-----PEELREAVALLKG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcC-----HHHHHHHHHHcCC
Confidence 4788888765553333222 2 233 223 478899999988753 38999998542 3445443 222 2
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
++|++ .++--+.+.+.+..+.|++.+-+
T Consensus 226 ~ipi~-AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 226 RVLLE-ASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred CCcEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 57755 44555778888999999987643
No 360
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.02 E-value=1.4e+02 Score=31.62 Aligned_cols=65 Identities=12% Similarity=-0.012 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMD-GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmd-GleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
+++.++++.. -.+|+|.+|.-.+..+ -.+++++++. .+++|||+= .-.+.+.+..+.++||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 4444444321 1259999999987654 4567788864 456776652 23377889999999999865
No 361
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=33.71 E-value=1.7e+02 Score=28.98 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPD-MDG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPd-mdG--leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+.++.+.+. .--.+|++|+.=-+ +.| +++++.++...++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 148 ~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 567777776654 23469999997665 344 4667777555599999999999999999999999988876
No 362
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=33.68 E-value=76 Score=31.96 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=42.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhC--C---CeEE-EECCHHHHHHHHHhcCC-CceEEEEeCCCCCCCH
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLREC--Q---YEVT-VTNRAITALKMLRENRN-NFDLVISDVYMPDMDG 84 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~--g---y~V~-~a~sg~eALe~L~e~~~-~pDLVIlDi~MPdmdG 84 (524)
+.|...+|-+||=|+.+.+..++++... + -++. ...++...++. ... .+|+||+|.--|...+
T Consensus 96 ~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~---~~~~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 96 KHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE---TQEEKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp TSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT---SSST-EEEEEEESSSTTSCG
T ss_pred hcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh---ccCCcccEEEEeCCCCCCCc
Confidence 3444468999999999999999988642 1 2333 55666666554 333 6999999998876544
No 363
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.65 E-value=1.8e+02 Score=31.77 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=41.4
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 69 NFDLVISDVYMPD-MDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 69 ~pDLVIlDi~MPd-mdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+|+|++|.--+. ..-.+++++++. .|+++|| +-.-...+.+..++++||+....
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLKV 221 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEEE
Confidence 4999999998874 455677888864 4677754 55566778899999999998753
No 364
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=33.42 E-value=3.1e+02 Score=28.11 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hc-CC
Q 009824 25 RVLAVDDDQTCLKILEKFLR----ECQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV-GL-EM 95 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~----~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L-r~-~~ 95 (524)
.|||.|+|-...-.+...++ ..+ ..+ +.+.+.+++++++.. .+|.|.+|-.-| +-++.+ +. ..
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 47888888655433333332 233 233 478899999998753 389999987544 333322 21 12
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+||+ .++--+.+.+.+..+.||+.+-+
T Consensus 222 ~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 36754 55666788899999999988754
No 365
>PRK04457 spermidine synthase; Provisional
Probab=33.39 E-value=3.8e+02 Score=27.11 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=38.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC--QYEVT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~--gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
..+|.+||=++.+.+..++.+... +-++. ...++.+.++.. ...+|+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---RHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---CCCCCEEEEeC
Confidence 578999999999999999887532 23443 446777666532 34699999996
No 366
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=33.27 E-value=3.1e+02 Score=29.12 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=39.7
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 009824 24 MRVLAVDDDQT----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (524)
Q Consensus 24 irVLIVDDdp~----~~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~ 90 (524)
-|+|||-|... ..+.+...|++.|.++..+. ...++.+.+++. .+|+||- .-|++-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG--GCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 47888887644 33557777877777765543 245666666654 4898774 345555665554
Q ss_pred H
Q 009824 91 V 91 (524)
Q Consensus 91 L 91 (524)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 4
No 367
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=33.19 E-value=2.1e+02 Score=31.85 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=45.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CC--CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCc
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMP-----DM--DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC 120 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----dm--dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~ 120 (524)
.+.+.+++.++... .+|.|.+--.-| +. -|++.++++....++||+.+-+- +.+.+.++++.|++
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 56777777666542 488887533332 21 27888887766678999988655 57788899999998
No 368
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.18 E-value=4.8e+02 Score=26.26 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCeEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCH
Q 009824 37 KILEKFLRECQYEVTV-------TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 37 ~~L~~~L~~~gy~V~~-------a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa~~d~ 108 (524)
..++..+++.|.+|+. ..+....+..++.. .||+|++-.. ..++..+++.++ .....++|..++..+.
T Consensus 155 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~--~pd~v~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 230 (312)
T cd06346 155 DAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG--GPDALVVIGY--PETGSGILRSAYEQGLFDKFLLTDGMKSD 230 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEEecc--cchHHHHHHHHHHcCCCCceEeeccccCh
Confidence 3455556666777652 13455566666543 3787776432 336666666553 3345566554443343
No 369
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=33.09 E-value=3.1e+02 Score=29.68 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=48.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhcCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMD-GFKLLELVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~-V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmd-GleLLe~Lr~~~diPVI 100 (524)
-+|+-||-++...+..+.-++..+.. +. ...+..+.+..+......+|+||+|- |... ..++++.+.....-.+|
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP--Pr~G~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTIIELKPERIV 392 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc--CCCCCCHHHHHHHHhcCCCEEE
Confidence 37999999999999888888766653 33 45666665543322123489999885 4321 35666666432223456
Q ss_pred EEecC
Q 009824 101 MLSAY 105 (524)
Q Consensus 101 vlTa~ 105 (524)
+++-.
T Consensus 393 yvsc~ 397 (431)
T TIGR00479 393 YVSCN 397 (431)
T ss_pred EEcCC
Confidence 56543
No 370
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=33.03 E-value=3.4e+02 Score=29.08 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhcCCCCcEEEEe-cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFK-LLELVGLEMDLPVVMLS-AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 70 pDLVIlDi~MPdmdGle-LLe~Lr~~~diPVIvlT-a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
.+.+|++..-...=-+| ++..+ .....||... ...+...+...++.|+++.+.+|-++.+++.....+
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 57777776544333344 22333 2344444433 334556677888999999999999999998777654
No 371
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.96 E-value=1.1e+02 Score=29.97 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=36.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
+|||.|||----+...+...|++.|+ ++....+.++. ..+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 47999999999888999999999998 77777766552 23888887
No 372
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=32.85 E-value=3.1e+02 Score=31.05 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=63.1
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHh---cCCCceEEEEeCC----CCCCCHHHHHHHH---hcCCCCcEEEEec
Q 009824 37 KILEKFLRECQYEVT--VTNRAITALKMLRE---NRNNFDLVISDVY----MPDMDGFKLLELV---GLEMDLPVVMLSA 104 (524)
Q Consensus 37 ~~L~~~L~~~gy~V~--~a~sg~eALe~L~e---~~~~pDLVIlDi~----MPdmdGleLLe~L---r~~~diPVIvlTa 104 (524)
..+...|++.|+.+. -+..+-..+..+.. -+ +|.|=+|-. ++. | -.+++.+ ....++.|| ..+
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~--~d~iKid~~~~~~~~~-~-~~~~~~i~~~a~~l~~~vi-aeg 616 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLP--IHMIKLDKSFVKNLPE-D-DAIARIISCVSDVLKVRVM-AEG 616 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCC--CcEEEECHHHHhcccC-C-HHHHHHHHHHHHHcCCeEE-Eec
Confidence 344555777898876 35677777888776 54 999998853 222 2 1233332 233455554 667
Q ss_pred CCCHHHHHHHHhcCCcE----EEeCCCCHHHHHHHH
Q 009824 105 YSDTKLVMKGINHGACD----YLLKPVRMEELKNTW 136 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~d----YL~KP~~~eeL~~aI 136 (524)
-.+.+....+.+.|++. |+.||...+++....
T Consensus 617 VEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 617 VETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred CCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 77888888888999964 688999998876544
No 373
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=32.80 E-value=5.1e+02 Score=25.81 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=58.0
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE-E-----CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcCCCCcEEEE
Q 009824 30 DDDQTCLKILEKFLRECQYEVTV-T-----NRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~~-a-----~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr~~~diPVIvl 102 (524)
.|.....++++.+ ++.+..|.. . .+..+..+.+.+. ..|.|-.+...++ .--++.++.++ .++|||..
T Consensus 123 ~~p~~l~eiv~av-r~~~~pVsvKir~g~~~~~~~la~~l~~a--G~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgn 197 (233)
T cd02911 123 KDPERLSEFIKAL-KETGVPVSVKIRAGVDVDDEELARLIEKA--GADIIHVDAMDPGNHADLKKIRDIS--TELFIIGN 197 (233)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEEcCCcCcCHHHHHHHHHHh--CCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEE
Confidence 3444455555544 344554441 1 2455555556543 3787777665554 22356666665 57999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEe
Q 009824 103 SAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~ 124 (524)
-+-.+.+.+.+.+..||+....
T Consensus 198 GgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 198 NSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred CCcCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999887654
No 374
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.76 E-value=1.5e+02 Score=28.10 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=28.8
Q ss_pred CHHHHHHHHhcC-CCCcEEEEec--CCCHHHHHHHHhcCCcEEEeCCC
Q 009824 83 DGFKLLELVGLE-MDLPVVMLSA--YSDTKLVMKGINHGACDYLLKPV 127 (524)
Q Consensus 83 dGleLLe~Lr~~-~diPVIvlTa--~~d~~~~~~al~~GA~dYL~KP~ 127 (524)
.|++.++.++.. +++||++-.. ......+..+.++||+..+.-..
T Consensus 39 ~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA 86 (202)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee
Confidence 567888877643 6788776422 22223456778889888776543
No 375
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=32.70 E-value=2.9e+02 Score=26.88 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC---------CCHHHHHHHHhc--CCCCcEEEEecCCCHHHHHH---HHhcCC
Q 009824 54 NRAITALKMLRENRNNFDLVISDVYMPD---------MDGFKLLELVGL--EMDLPVVMLSAYSDTKLVMK---GINHGA 119 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pDLVIlDi~MPd---------mdGleLLe~Lr~--~~diPVIvlTa~~d~~~~~~---al~~GA 119 (524)
.+..+.++.+... .+|.|++|+.-.- .+-.+++..++. .....+++-....+.....+ ++..|+
T Consensus 8 ~~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 3444555555443 5999999996533 122233333332 23457777777777777777 999999
Q ss_pred cEEEeCCC-CHHHHHHHHHHH
Q 009824 120 CDYLLKPV-RMEELKNTWQHV 139 (524)
Q Consensus 120 ~dYL~KP~-~~eeL~~aI~~v 139 (524)
++++..=+ +.+++..+++.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 99887555 466666666554
No 376
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=32.64 E-value=2.2e+02 Score=28.33 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=53.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC-------CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMP-------DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MP-------dmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.+.+++.++.+. .+|-|.+.-.-| ...|++.+++++....+|+|.+-+- +.+.+.+.++.||+..-+
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAv 185 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLEAGADGVAV 185 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHhCCCeEEe
Confidence 66788888887653 389888876544 3468999998876667999988765 567899999999998643
No 377
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=32.50 E-value=4.2e+02 Score=27.24 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=47.1
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhc-C-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 53 TNRAITALKMLRENRNNFDLVISDVYM-----PDMDGFKLLELVGL-E-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 53 a~sg~eALe~L~e~~~~pDLVIlDi~M-----PdmdGleLLe~Lr~-~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.+.++|..+.+. .+|.|.+.-+- .+...++++..++. . .++|||.-.+-.+...+.+++..||+....
T Consensus 180 v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 180 ILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred cCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3566666555432 37777665321 12244666666643 2 369999999999999999999999998765
No 378
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=32.43 E-value=78 Score=32.42 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHh-cCCCCcEEEEe------cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 85 FKLLELVG-LEMDLPVVMLS------AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 85 leLLe~Lr-~~~diPVIvlT------a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+++++.++ ...++|+|+|| .++-.....++.++|+++.|.--+..+|-......+.+
T Consensus 75 ~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~ 138 (259)
T PF00290_consen 75 FELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKK 138 (259)
T ss_dssp HHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH
No 379
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=32.41 E-value=5.1e+02 Score=31.96 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=69.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-------------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-------------VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-------------V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe 89 (524)
+-||+|+.--...+..++.+.+..+++ |+.+....+..+.+.+.......+-+|+. |--++.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~----D~e~L~~ 644 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS----DSESLLK 644 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC----CHHHHHH
Confidence 458999998776666555555544554 66565433333433332112456777752 3334555
Q ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 90 LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 90 ~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.++. .++-|+++-.......+..|+++|..-+..| ...++.....+.+.+
T Consensus 645 ~v~~-~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 645 YVSQ-VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKAKE 694 (1042)
T ss_pred hhcC-CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHHHH
Confidence 5543 5665665556667888999999999888888 666666655555443
No 380
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.36 E-value=2.2e+02 Score=29.16 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=52.2
Q ss_pred cEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCCC-----CHHHHHHHHhcCC
Q 009824 24 MRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV--YMPDM-----DGFKLLELVGLEM 95 (524)
Q Consensus 24 irVLIVDDdp~~~-~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi--~MPdm-----dGleLLe~Lr~~~ 95 (524)
.+|+|+|..|..- ..+.+.|.+.|..++...+..-+.-+ . ++|.||+.. .+.++ -|--.+.......
T Consensus 110 ~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~~m-~----~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~ 184 (253)
T PRK06372 110 KSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEAV-L----NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYL 184 (253)
T ss_pred CEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 5899999888643 56777777889999877666444322 2 288888754 34443 3655566665677
Q ss_pred CCcEEEEecC
Q 009824 96 DLPVVMLSAY 105 (524)
Q Consensus 96 diPVIvlTa~ 105 (524)
++||++++..
T Consensus 185 ~vPv~V~~~s 194 (253)
T PRK06372 185 KKPFYSLTIS 194 (253)
T ss_pred CCCEEEEeec
Confidence 8999997764
No 381
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.25 E-value=4.5e+02 Score=25.01 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCeEEEE-CCH----HHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHhcCCCCcEEEEe
Q 009824 36 LKILEKFLRECQYEVTVT-NRA----ITALKMLRENRNNFDLVISDVYMPDM-------DGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~a-~sg----~eALe~L~e~~~~pDLVIlDi~MPdm-------dGleLLe~Lr~~~diPVIvlT 103 (524)
...+.+..++.|..+... .+. +++..++. . .+|+|-+. |+. .+++.++.++...+.+.|+++
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~-~--g~d~v~~~---pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~ 164 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE-L--GADYIGVH---TGLDEQAKGQNPFEDLQTILKLVKEARVAVA 164 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH-c--CCCEEEEc---CCcCcccCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 344555566678777633 232 44444433 2 37888764 332 244555555432223456666
Q ss_pred cCCCHHHHHHHHhcCCcEEEe
Q 009824 104 AYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~ 124 (524)
+--+.+.+.+++++||+.++.
T Consensus 165 GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 165 GGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CCcCHHHHHHHHHcCCCEEEE
Confidence 777888899999999998766
No 382
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=32.08 E-value=1e+02 Score=28.45 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=30.0
Q ss_pred EEEEEeCCHH-------HHHHHHHHHHhCCCeEE---EECC-HHHHHHHHHhcCC--CceEEEEe
Q 009824 25 RVLAVDDDQT-------CLKILEKFLRECQYEVT---VTNR-AITALKMLRENRN--NFDLVISD 76 (524)
Q Consensus 25 rVLIVDDdp~-------~~~~L~~~L~~~gy~V~---~a~s-g~eALe~L~e~~~--~pDLVIlD 76 (524)
.|+.+.|+-. +...|+.+|++.|+++. .+.+ .++..+.+++... .+|+||+-
T Consensus 4 ~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 4 AVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred EEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4555555433 45678889999998866 2344 3333333433212 48888873
No 383
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.06 E-value=5.2e+02 Score=28.03 Aligned_cols=91 Identities=20% Similarity=0.181 Sum_probs=54.6
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHH---HHHHhc-
Q 009824 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MPDMDGFKL---LELVGL- 93 (524)
Q Consensus 23 ~irVLIVDDdp~~---~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~--MPdmdGleL---Le~Lr~- 93 (524)
+.+|.+|+-|..- ...|+.+.+..|..|..+.+..+..+.+... ..+|+||+|.- ++ .|-..+ .+.+..
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNAC 283 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHhc
Confidence 4578888877642 2234444445677777777777666666554 46999999984 23 243322 233332
Q ss_pred CCC-CcEEEEecCCCHHHHHHHH
Q 009824 94 EMD-LPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 94 ~~d-iPVIvlTa~~d~~~~~~al 115 (524)
.++ -.++++++......+.+.+
T Consensus 284 ~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 284 GRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred CCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 3567888877766655544
No 384
>PRK10060 RNase II stability modulator; Provisional
Probab=32.00 E-value=3.6e+02 Score=30.98 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHH-h--cCCCCcEEEEecCC
Q 009824 37 KILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYM----P-DMDGFKLLELV-G--LEMDLPVVMLSAYS 106 (524)
Q Consensus 37 ~~L~~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~M----P-dmdGleLLe~L-r--~~~diPVIvlTa~~ 106 (524)
..+-..|+..|+.+.. +.++-..+..|..-+ +|.|=+|-.. . +.....+++.+ . ...++.|| ..+-.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCC
Confidence 3344566778998874 567778888887654 9999999533 2 23445555544 2 23456665 55777
Q ss_pred CHHHHHHHHhcCCcE----EEeCCCCHHHHHHHHHH
Q 009824 107 DTKLVMKGINHGACD----YLLKPVRMEELKNTWQH 138 (524)
Q Consensus 107 d~~~~~~al~~GA~d----YL~KP~~~eeL~~aI~~ 138 (524)
+.+....+.+.|++. |+.||+..+++...++.
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 777787888899874 58899999988776543
No 385
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.94 E-value=4e+02 Score=26.90 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=31.1
Q ss_pred HHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 85 FKLLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 85 leLLe~Lr~~~--diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
++.++.++... ++|||...+-.+.+.+.+++.+||+...
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 45566665443 8999999999999999999999987654
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.90 E-value=4.1e+02 Score=29.29 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=48.1
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHH
Q 009824 23 GMRVLAVDDDQTCL---KILEKFLRECQYEVTVTN---RA----ITALKMLRENRNNFDLVISDVYMPDMD--GFKLLEL 90 (524)
Q Consensus 23 ~irVLIVDDdp~~~---~~L~~~L~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVIlDi~MPdmd--GleLLe~ 90 (524)
+.+|+||+-|+.-. +.|+.+-+..+..+.... +. .++++.++.. .+|+||+|.- |.. --++++.
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTa--Gr~~~d~~lm~E 203 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTS--GRHKQEDSLFEE 203 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CCCcchHHHHHH
Confidence 45788888875432 233333334455544332 21 2355555432 4999999984 322 1223433
Q ss_pred Hh-----cCCCCcEEEEecCCC--HHHHHHHHh--cCCcEEEe
Q 009824 91 VG-----LEMDLPVVMLSAYSD--TKLVMKGIN--HGACDYLL 124 (524)
Q Consensus 91 Lr-----~~~diPVIvlTa~~d--~~~~~~al~--~GA~dYL~ 124 (524)
++ ..++-.+.++.+... .....+++. .+....+.
T Consensus 204 l~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 204 MLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred HHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 32 234444555655432 223445553 35555543
No 387
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=31.82 E-value=3.5e+02 Score=30.67 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=50.7
Q ss_pred ceEEEEeCCCCCC-CHH--HHHHHHhcCCCCcEEEEecCCCHHHHHHHHh-cCCcEEEe------CCCCHHHHHHHHH
Q 009824 70 FDLVISDVYMPDM-DGF--KLLELVGLEMDLPVVMLSAYSDTKLVMKGIN-HGACDYLL------KPVRMEELKNTWQ 137 (524)
Q Consensus 70 pDLVIlDi~MPdm-dGl--eLLe~Lr~~~diPVIvlTa~~d~~~~~~al~-~GA~dYL~------KP~~~eeL~~aI~ 137 (524)
-.+++.|+..-++ .|+ ++++.+....++|||.-.+....+.+.++++ .||+.-+. +-++..+++..+.
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 4699999987763 564 5678787778999999999999999999997 45666444 4456666665544
No 388
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.81 E-value=4.9e+02 Score=25.85 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCC-CC-CC-CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 54 NRAITALKMLRENRNNFD-LVISDVY-MP-DM-DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pD-LVIlDi~-MP-dm-dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+..+..+.+.+. ++ ++++|+. +- +. .-+++++.+.....+||++=-+-.+.+.+.+++..||+..++
T Consensus 30 ~dp~~~a~~~~~~---~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY---VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh---CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 3677777766542 33 7778886 32 32 468888888666889999988899999999999999998776
No 389
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=31.79 E-value=6.1e+02 Score=27.00 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=66.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEE---CCHHHHHHHHHhcCCCceEEEEeC-CCCCC-CHHHHHHHHhcCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVT---NRAITALKMLRENRNNFDLVISDV-YMPDM-DGFKLLELVGLEMD 96 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-V~~a---~sg~eALe~L~e~~~~pDLVIlDi-~MPdm-dGleLLe~Lr~~~d 96 (524)
.++.+||.|-+. +..+++.+++.+.+ ++.. -..++..+.+.. .|+.++=. ...+. =+..+++.+. ..
T Consensus 269 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~~~~~~~~~~~p~~~~Eama--~G 341 (415)
T cd03816 269 KLLCIITGKGPL-KEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVSLHTSSSGLDLPMKVVDMFG--CG 341 (415)
T ss_pred CEEEEEEecCcc-HHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEEccccccccCCcHHHHHHHH--cC
Confidence 478888887653 56777777776653 4433 245566565543 57766410 11111 2456677664 46
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+|||. |.... ..+.++.|.++++.. +.++|.+++..++..
T Consensus 342 ~PVI~-s~~~~---~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 342 LPVCA-LDFKC---IDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred CCEEE-eCCCC---HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 79987 44333 445677888999984 889999999888664
No 390
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=31.75 E-value=1.3e+02 Score=30.70 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=24.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
.+|.+|+-|+. ....+..+-+..+..+..+.+..+..+.+... ..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 45556655542 12233333333344444444544444444433 2356666664
No 391
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=31.73 E-value=1.7e+02 Score=31.82 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=40.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~---V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
-+|.-||=++...+..++-++..++. +. ...+..+.+..+......||+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 47999999999999999999877653 33 45677777655543334699999984
No 392
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=31.66 E-value=3.8e+02 Score=28.02 Aligned_cols=95 Identities=11% Similarity=0.155 Sum_probs=59.5
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE------EC---CHHHHHHHHHhcCCCceEEEEeCCC-CC----CCHHHHHHHHhc
Q 009824 28 AVDDDQTCLKILEKFLRECQYEVTV------TN---RAITALKMLRENRNNFDLVISDVYM-PD----MDGFKLLELVGL 93 (524)
Q Consensus 28 IVDDdp~~~~~L~~~L~~~gy~V~~------a~---sg~eALe~L~e~~~~pDLVIlDi~M-Pd----mdGleLLe~Lr~ 93 (524)
++.|...+.++++.+-+..++.|.. .. +..+..+.+.+. ..|.|.+.-.- ++ .-.+++++.++.
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 3445556666666665555544442 11 233444444433 36766554332 22 133778888877
Q ss_pred CCCCcEEEEecCCCHHHHHHHHh-cCCcEEEe
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGIN-HGACDYLL 124 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~-~GA~dYL~ 124 (524)
..++|||..-+-.+.+.+.++++ .||+....
T Consensus 192 ~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 KVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 77899999999999999999997 58888755
No 393
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=31.66 E-value=4e+02 Score=29.05 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=60.1
Q ss_pred CccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCC-CCCCC---HHHHHHHHhcC
Q 009824 22 IGMRVLAVDD-DQTCLKILEKFLRECQYEVTVTN--RAITALKMLRENRNNFDLVISDVY-MPDMD---GFKLLELVGLE 94 (524)
Q Consensus 22 ~~irVLIVDD-dp~~~~~L~~~L~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVIlDi~-MPdmd---GleLLe~Lr~~ 94 (524)
.+=+|++.+| ---.+..+..+|.+.|.+|+.+. +..+.++.+.. ...++|+++-= -|-+. --.+.+..+.
T Consensus 101 ~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~- 177 (396)
T COG0626 101 AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKA- 177 (396)
T ss_pred CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHh-
Confidence 3457888888 56778889999999999998665 44556656543 23899999862 13332 2222233332
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.. .++++=..--.....+.+++||+-.+.
T Consensus 178 ~g-~~vvVDNTfatP~~q~PL~~GaDIVvh 206 (396)
T COG0626 178 YG-ALVVVDNTFATPVLQRPLELGADIVVH 206 (396)
T ss_pred cC-CEEEEECCcccccccChhhcCCCEEEE
Confidence 23 444443333334566777888776554
No 394
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=31.62 E-value=80 Score=31.30 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=33.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHH
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITA 59 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eA 59 (524)
+++|.|||=...++..+...|++.|++++...+.++.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 3789999999999999999999999999998888774
No 395
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=31.61 E-value=2.1e+02 Score=29.69 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=49.3
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--eCCCCCC-----CHHHHHHHHhcC
Q 009824 23 GMRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS--DVYMPDM-----DGFKLLELVGLE 94 (524)
Q Consensus 23 ~irVLIVDDdp~~~-~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl--Di~MPdm-----dGleLLe~Lr~~ 94 (524)
.++|+++|..|... ..|.+.|.+.|..|+...+..-+.-+ . .+|.||+ |..+.++ -|--.+..+...
T Consensus 135 ~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m-~----~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~ 209 (275)
T PRK08335 135 RFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFA-K----EATLALVGADNVTRDGYVVNKAGTYLLALACHD 209 (275)
T ss_pred ceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHH-H----hCCEEEECccEEecCCCEeehhhHHHHHHHHHH
Confidence 46788888887644 34577788889988866655544433 2 2788887 4444433 244444455456
Q ss_pred CCCcEEEEecC
Q 009824 95 MDLPVVMLSAY 105 (524)
Q Consensus 95 ~diPVIvlTa~ 105 (524)
.++|++++...
T Consensus 210 ~~vPfyV~a~~ 220 (275)
T PRK08335 210 NGVPFYVAAET 220 (275)
T ss_pred cCCCEEEECcc
Confidence 78899887543
No 396
>PRK13695 putative NTPase; Provisional
Probab=31.58 E-value=3.8e+02 Score=24.77 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=41.4
Q ss_pred CCceEEEEeC--CCCCCCH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHH--hcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 68 NNFDLVISDV--YMPDMDG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGI--NHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 68 ~~pDLVIlDi--~MPdmdG--leLLe~Lr~~~diPVIvlTa~~d~~~~~~al--~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
..+|++|+|= .+...+. .++++.+- ....|+|+++...........+ ..+..=|-..|-+.++|...|...+
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 3689999996 3333221 23333222 3457888887765443323333 2344456667888888888776543
No 397
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.43 E-value=3.3e+02 Score=28.99 Aligned_cols=63 Identities=14% Similarity=0.253 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 009824 24 MRVLAVDDDQTC----LKILEKFLRECQYEVTVTNR---------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (524)
Q Consensus 24 irVLIVDDdp~~----~~~L~~~L~~~gy~V~~a~s---------g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~ 90 (524)
-|+|||-|.... .+.++..|+..+.++..+.. ..++.+.+++. .+|+||- .-|.+-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 479999876543 34677788777777665532 35566666654 4898874 345566666554
Q ss_pred H
Q 009824 91 V 91 (524)
Q Consensus 91 L 91 (524)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 4
No 398
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=31.37 E-value=7e+02 Score=26.94 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFDLVISDVY-------MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~-------MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+..+.+.+. ..|+|.++-. -...+-.++.+.++ ..++|||+ ..-.+.+.+.++++.||+.++.
T Consensus 143 ~~~e~a~~l~eA--Gad~I~ihgrt~~q~~~sg~~~p~~l~~~i~-~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~ 215 (369)
T TIGR01304 143 NAREIAPIVVKA--GADLLVIQGTLVSAEHVSTSGEPLNLKEFIG-ELDVPVIA-GGVNDYTTALHLMRTGAAGVIV 215 (369)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCCCCHHHHHHHHH-HCCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 455666666554 4899998732 12334444445444 35799986 6677788899999999999873
No 399
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=31.17 E-value=3.1e+02 Score=27.03 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=42.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEE--EeC-CCCCCCHHHHHHHHh----cC-CCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVI--SDV-YMPDMDGFKLLELVG----LE-MDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVI--lDi-~MPdmdGleLLe~Lr----~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
.+.+..+|+...... .+.|= ++- .--+.||+++++.+. .. ..+. |+..+..+...+.++..+||+.+-
T Consensus 108 ~V~s~~Qa~~Aa~AG---A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tk-il~As~r~~~ei~~a~~~Gad~vT 183 (211)
T cd00956 108 AIFSAAQALLAAKAG---ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTK-ILAASIRNPQHVIEAALAGADAIT 183 (211)
T ss_pred EecCHHHHHHHHHcC---CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCce-EEecccCCHHHHHHHHHcCCCEEE
Confidence 456666666665533 23311 111 112579999887552 22 2333 445566678888899999999887
Q ss_pred eCC
Q 009824 124 LKP 126 (524)
Q Consensus 124 ~KP 126 (524)
.-|
T Consensus 184 v~~ 186 (211)
T cd00956 184 LPP 186 (211)
T ss_pred eCH
Confidence 654
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.14 E-value=4.4e+02 Score=29.01 Aligned_cols=84 Identities=25% Similarity=0.286 Sum_probs=43.1
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeCCC--C-CCCHHHHHH
Q 009824 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTN---RA----ITALKMLRENRNNFDLVISDVYM--P-DMDGFKLLE 89 (524)
Q Consensus 23 ~irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVIlDi~M--P-dmdGleLLe 89 (524)
+.+|++||-|.. ..+.|+.+-+..+..+..+. +. .++++.+.. ..+|+||+|.-= + +...++-+.
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTaGr~~~d~~l~~eL~ 205 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTAGRLQIDEELMEELA 205 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccccCHHHHHHHH
Confidence 468999988842 33444444455565555432 23 233444333 348999999832 2 122344443
Q ss_pred HHh--cCCCCcEEEEecCCCH
Q 009824 90 LVG--LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 90 ~Lr--~~~diPVIvlTa~~d~ 108 (524)
.+. ..++-.++|+.+....
T Consensus 206 ~i~~~~~p~e~lLVvda~tgq 226 (428)
T TIGR00959 206 AIKEILNPDEILLVVDAMTGQ 226 (428)
T ss_pred HHHHhhCCceEEEEEeccchH
Confidence 332 2344345555555433
No 401
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.08 E-value=2e+02 Score=32.72 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=56.4
Q ss_pred cEEEEE--eCCHHHHH---HHHHHHHhCCCeEEEECCHHHHHHH-HH------hcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 24 MRVLAV--DDDQTCLK---ILEKFLRECQYEVTVTNRAITALKM-LR------ENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 24 irVLIV--DDdp~~~~---~L~~~L~~~gy~V~~a~sg~eALe~-L~------e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
++|.|| -+.+...+ .+..+|++.+++|.........+.. +. .....+|+||+ -|.||. +|+..
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT-~L~aa 365 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDGT-VLRAS 365 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcHH-HHHHH
Confidence 567776 23333333 3444555667776654332222210 00 00113566555 378885 44433
Q ss_pred h--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 92 G--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 92 r--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+ ...++||+=+ ..|=.+||. .+..+++...+..++++.
T Consensus 366 ~~~~~~~~PilGi-------------n~G~lGFL~-~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 366 KLVNGEEIPIICI-------------NMGTVGFLT-EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred HHhcCCCCCEEEE-------------cCCCCCcCc-ccCHHHHHHHHHHHHcCC
Confidence 3 2347888754 346678888 788899999999987753
No 402
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=30.95 E-value=2.9e+02 Score=28.89 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-CCC
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL-KPV 127 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~-KP~ 127 (524)
++.++.++....+||++--...+.....++++.|+.|++. ||.
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 272 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVT 272 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCcc
Confidence 3334444444557766655555677778888877777663 443
No 403
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=30.87 E-value=3.6e+02 Score=27.67 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=46.4
Q ss_pred hCCCeEEEECCH-----HHHH---H-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHH
Q 009824 45 ECQYEVTVTNRA-----ITAL---K-MLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 45 ~~gy~V~~a~sg-----~eAL---e-~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al 115 (524)
+.+.+|..+.+| +++- . ++++. +||++|.=-=-|..-|-.-.+.+-...++|.|++|........ +++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~--~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l 105 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEW--KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAM 105 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhh--CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHH
Confidence 347777776654 2222 2 33333 4898887443333445444554434567899999988776655 667
Q ss_pred hcCCcEEEeCC
Q 009824 116 NHGACDYLLKP 126 (524)
Q Consensus 116 ~~GA~dYL~KP 126 (524)
+..-.+||.=+
T Consensus 106 ~~~g~GYIivk 116 (277)
T PRK00994 106 EEQGLGYIIVK 116 (277)
T ss_pred HhcCCcEEEEe
Confidence 66555665543
No 404
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=30.86 E-value=2.9e+02 Score=27.05 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCC-C--CHHHHHHHHhcCCCCcEEEEecCCCHHHHHH-HHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFD-LVISDVYMPD-M--DGFKLLELVGLEMDLPVVMLSAYSDTKLVMK-GINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~MPd-m--dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~-al~~GA~dYL~ 124 (524)
.+..+.+.+. ..| +++.++.--+ . -.+++++.++...++|||..-+-.+.+.+.+ +.+.||+..++
T Consensus 156 ~~~~~~~~~~--G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQL--GAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHc--CCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 4444555443 356 5566642211 1 2367888887667899999999999999988 66789998765
No 405
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.66 E-value=2.6e+02 Score=26.74 Aligned_cols=62 Identities=24% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCeEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 35 CLKILEKFLRECQYEVTVTNR------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s------g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
....+++.+++.||.+..+.. ..++++.+... .+|.||+....+... +.+.+ ...+|+|++.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~~~~~~---~~~~~--~~~ipvv~~~ 84 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRK--QADGIILLDGSLPPT---ALTAL--AKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHc--CCCEEEEecCCCCHH---HHHHH--hcCCCEEEEe
Confidence 446677777788999875542 22334444443 488777643222212 33333 2378999874
No 406
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=30.66 E-value=3.8e+02 Score=28.26 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 009824 24 MRVLAVDDDQTCL-----KILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 24 irVLIVDDdp~~~-----~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe 89 (524)
-|+|||-|..... +.+...|+..|.++..+. +..++.+.+++.. +|+||- .-|.+-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 5889998876522 567788887777766543 2456666666654 898875 34555566555
Q ss_pred HH
Q 009824 90 LV 91 (524)
Q Consensus 90 ~L 91 (524)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 33
No 407
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.55 E-value=5.5e+02 Score=25.49 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=63.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEE--CCHHHHHHHHHhcCCCceEEEEeCCC-CCCCHHHHHHHHhcCCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVT--NRAITALKMLRENRNNFDLVISDVYM-PDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~M-PdmdGleLLe~Lr~~~di 97 (524)
.++++|+.+.+. ...+++.+++.+. .|... -+..+..+.+.. .|++++-... .+.-|+.+++.+.. .+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~~--g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMAF--GK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHHc--CC
Confidence 467777776543 3345555544332 34432 233444445432 5776653221 23447778887743 57
Q ss_pred cEEEEecCCCHHHHHHHHh-cCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLSAYSDTKLVMKGIN-HGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~-~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|||..-.....+ .+. .|.++++..+-+.+++..++..++..
T Consensus 291 Pvi~~~~~~~~~----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 291 PVISTEIGTGGS----YVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred CEEecCCCCchh----HHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 888542222222 233 48889999999999999999998753
No 408
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=30.51 E-value=1e+02 Score=32.02 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=42.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-------CCHHHHHHHHHhcCCCceEEEEeCCCCCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT-------NRAITALKMLRENRNNFDLVISDVYMPDMD 83 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a-------~sg~eALe~L~e~~~~pDLVIlDi~MPdmd 83 (524)
|+|||..+.-..-..|.+.|. .+++|+.. .+.....+.+++.+ ||+||-=.-+...|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~--PDvVIn~AAyt~vD 64 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR--PDVVINAAAYTAVD 64 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC--CCEEEECccccccc
Confidence 579999999999999999997 56777643 34566667777654 99999655554443
No 409
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=30.50 E-value=4.9e+02 Score=25.55 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 86 eLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+++.+. ..+|||+.-.... ...+..+-.+++.++-+.++|.+++..++.
T Consensus 315 ~~~Ea~~--~G~pvi~~~~~~~----~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 315 KLFEYMA--AGKPVLASVDGES----AELVEEAGAGLVVPPGDPEALAAAILELLD 364 (394)
T ss_pred HHHHHHH--CCCcEEEecCCCc----hhhhccCCcceEeCCCCHHHHHHHHHHHHh
Confidence 3455543 3578776533332 233444577889999999999999998873
No 410
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.34 E-value=1.7e+02 Score=30.17 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHh-cCCCCcEEEEe------cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 85 FKLLELVG-LEMDLPVVMLS------AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 85 leLLe~Lr-~~~diPVIvlT------a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+++++.++ ...++|+|+|| .++-.....++.+.|+++.|+--+..++-......+.+.
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~ 146 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH 146 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHc
No 411
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.33 E-value=3.2e+02 Score=28.14 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=33.2
Q ss_pred HHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr~~~--diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
++.+..++... ++|||...+-.+.+.+.+.+.+||+...+
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 56666665443 89999999999999999999999998654
No 412
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.24 E-value=1.6e+02 Score=26.36 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCCeEEEE---CCH-HHHHHHHHhcCCCceEEEEe
Q 009824 34 TCLKILEKFLRECQYEVTVT---NRA-ITALKMLRENRNNFDLVISD 76 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a---~sg-~eALe~L~e~~~~pDLVIlD 76 (524)
.+...+..+|++.|+++... .+. ++..+.+++....+|+||+=
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 35567888888889887633 333 33333343322237888873
No 413
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=30.04 E-value=5.3e+02 Score=27.40 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=51.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhc------------CCCceEEEEeCCCCCCCH--HHHH
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLREN------------RNNFDLVISDVYMPDMDG--FKLL 88 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy-~V~-~a~sg~eALe~L~e~------------~~~pDLVIlDi~MPdmdG--leLL 88 (524)
+|+.||-++...+.+++-++..+. .+. ...+..+.++.+... ...||+||+|- | ..| -+++
T Consensus 230 ~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--P-R~G~~~~~l 306 (362)
T PRK05031 230 RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--P-RAGLDDETL 306 (362)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--C-CCCCcHHHH
Confidence 799999999999998888776665 343 567777777654321 11489999994 4 345 4566
Q ss_pred HHHhcCCCCcEEEEecCC
Q 009824 89 ELVGLEMDLPVVMLSAYS 106 (524)
Q Consensus 89 e~Lr~~~diPVIvlTa~~ 106 (524)
+.|.. + -.||+++-..
T Consensus 307 ~~l~~-~-~~ivyvSC~p 322 (362)
T PRK05031 307 KLVQA-Y-ERILYISCNP 322 (362)
T ss_pred HHHHc-c-CCEEEEEeCH
Confidence 77754 2 3466666554
No 414
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=29.98 E-value=3e+02 Score=26.93 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 54 NRAITALKMLRENRNNFD-LVISDVYMPD---MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pD-LVIlDi~MPd---mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.+..++.+.+.+.. ++ ++++|+.--+ ..-+++++.+.....+||++=.+-.+.+.+.+++..|++..+.-
T Consensus 30 ~dp~~~a~~~~~~g--~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKG--ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcC--CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 47777777776532 44 8899997643 23456777776666899998888888999999999998887764
No 415
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=29.91 E-value=2.2e+02 Score=29.00 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHhCCCeEEEEC----C---HHHHHHHHHhcCCCceEEEEeC-C-C--CC-C--CHHHHHHHHhcCCCCcEEEEec
Q 009824 39 LEKFLRECQYEVTVTN----R---AITALKMLRENRNNFDLVISDV-Y-M--PD-M--DGFKLLELVGLEMDLPVVMLSA 104 (524)
Q Consensus 39 L~~~L~~~gy~V~~a~----s---g~eALe~L~e~~~~pDLVIlDi-~-M--Pd-m--dGleLLe~Lr~~~diPVIvlTa 104 (524)
|...+.+.|..|..-. + ...|++.+... +..+|+|+.. . . |- . -.+..+..++...++||++=+.
T Consensus 124 LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~ 202 (260)
T TIGR01361 124 LLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPS 202 (260)
T ss_pred HHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCC
Confidence 3333444566555321 3 35566666543 3468999885 2 1 21 1 2334445566556799998455
Q ss_pred C-CC-----HHHHHHHHhcCCcE-EEeCCCCH
Q 009824 105 Y-SD-----TKLVMKGINHGACD-YLLKPVRM 129 (524)
Q Consensus 105 ~-~d-----~~~~~~al~~GA~d-YL~KP~~~ 129 (524)
| .. ......|+.+||++ +|-|=+++
T Consensus 203 Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~ 234 (260)
T TIGR01361 203 HAAGRRDLVIPLAKAAIAAGADGLMIEVHPDP 234 (260)
T ss_pred CCCCccchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 5 33 45566788999998 66665443
No 416
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=29.84 E-value=1.6e+02 Score=31.04 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=38.0
Q ss_pred CCCCcCCCCCCccE--EEEEeCCH-------HHHHHHHHHHHhCCCeEEE---ECCHHHHH-HHHHhc-CCCceEEEE
Q 009824 12 DEDGVIDKFPIGMR--VLAVDDDQ-------TCLKILEKFLRECQYEVTV---TNRAITAL-KMLREN-RNNFDLVIS 75 (524)
Q Consensus 12 ~~~~~~~~~p~~ir--VLIVDDdp-------~~~~~L~~~L~~~gy~V~~---a~sg~eAL-e~L~e~-~~~pDLVIl 75 (524)
...+.+.++++..+ |+++.|.. .+...|..+|++.|+++.. +.+..+.+ +.+++. ...+|+||+
T Consensus 144 gksg~~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIIT 221 (312)
T PRK03604 144 GKSGHKRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIIT 221 (312)
T ss_pred CCCCcccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEE
Confidence 33445566666556 99999853 4556788889888988763 33333333 333322 124677765
No 417
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=29.82 E-value=5.8e+02 Score=26.76 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=45.9
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeCC--CCCCCH-HHHHH
Q 009824 23 GMRVLAVDDDQTCL---KILEKFLRECQYEVTVTN---RA----ITALKMLRENRNNFDLVISDVY--MPDMDG-FKLLE 89 (524)
Q Consensus 23 ~irVLIVDDdp~~~---~~L~~~L~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVIlDi~--MPdmdG-leLLe 89 (524)
+.+|+|++-|..-. +.+..+-+..+..++... +. .+++..... ..+|+||+|.- ++..+. ++-++
T Consensus 142 g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTaGr~~~~~~l~~eL~ 219 (318)
T PRK10416 142 GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTAGRLHNKTNLMEELK 219 (318)
T ss_pred CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 46899998776322 234444455566555432 21 233333222 35999999983 332222 23232
Q ss_pred HH-h-------cCCCCcEEEEecCCCHHHHHHHH
Q 009824 90 LV-G-------LEMDLPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 90 ~L-r-------~~~diPVIvlTa~~d~~~~~~al 115 (524)
.+ + ..++-.++++.+........++.
T Consensus 220 ~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~ 253 (318)
T PRK10416 220 KIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253 (318)
T ss_pred HHHHHHhhhcCCCCceEEEEEECCCChHHHHHHH
Confidence 22 1 12344567777766554444443
No 418
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.73 E-value=2.6e+02 Score=29.34 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=46.9
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEE--E------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 24 MRVLAVDDDQTC---LKILEKFLRECQYEVTV--T------NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 24 irVLIVDDdp~~---~~~L~~~L~~~gy~V~~--a------~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
-|+|||-|.... .+.+...|++.+.++.. + .+..++.+.+++. .+|+||- +-|+.-+++.+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDN--GADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhc--CCCEEEE---ecCchhhHHHHHHH
Confidence 578888876443 33455556665655431 1 2345666666654 4898765 46777778777775
Q ss_pred cCCCCcEEEEec
Q 009824 93 LEMDLPVVMLSA 104 (524)
Q Consensus 93 ~~~diPVIvlTa 104 (524)
....+|+|.+..
T Consensus 98 ~~~~~P~iaIPT 109 (351)
T cd08170 98 DYLGAPVVIVPT 109 (351)
T ss_pred HHcCCCEEEeCC
Confidence 445688887743
No 419
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=29.72 E-value=5.1e+02 Score=24.97 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=40.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.|++|.-... +.-|..+++.+. ..+|||. |... ...+.+..|..+|+.++-+.+++...++.+..
T Consensus 264 ~d~~i~ps~~-e~~~~~~~Ea~~--~G~PvI~-~~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 264 ADLFVLSSRY-EGFPNVLLEAMA--LGTPVVA-TDCP---GPREILEDGENGLLVPVGDEAALAAAALALLD 328 (353)
T ss_pred CCEEEeCccc-CCCCcHHHHHHH--hCCCEEE-cCCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHHh
Confidence 3455443322 223555666553 3578775 3333 34566788899999999999998766666544
No 420
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=29.61 E-value=1.5e+02 Score=33.21 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=48.4
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHhc
Q 009824 22 IGMRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD-------GFKLLELVGL 93 (524)
Q Consensus 22 ~~irVLIVDDdp~~~-~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmd-------GleLLe~Lr~ 93 (524)
+.+||+|||..|.+. +.+-+.|...|+.++.+.= .|+..+-. +.+.||+..+----+ |-..+..+..
T Consensus 384 k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I--~a~syim~---evtkvfLGahailsNG~vysR~GTa~valvAn 458 (556)
T KOG1467|consen 384 KKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLI--NAASYIML---EVTKVFLGAHAILSNGAVYSRVGTACVALVAN 458 (556)
T ss_pred cceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEe--hhHHHHHH---hcceeeechhhhhcCcchhhhcchHHHHHHhc
Confidence 568999999998764 2344445556888874432 12222211 267888877543333 4444555566
Q ss_pred CCCCcEEEEecC
Q 009824 94 EMDLPVVMLSAY 105 (524)
Q Consensus 94 ~~diPVIvlTa~ 105 (524)
..++|||++.-.
T Consensus 459 a~nVPVlVCCE~ 470 (556)
T KOG1467|consen 459 AFNVPVLVCCEA 470 (556)
T ss_pred ccCCCEEEEech
Confidence 789999998654
No 421
>PRK08999 hypothetical protein; Provisional
Probab=29.57 E-value=2.3e+02 Score=29.06 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=49.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC-----C--CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMP-----D--MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----d--mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
.+.+.+++.++.+. .+|.|++--.-| + .-|++.++.+....++||+.+-+- +.+.+.+++++||+++-
T Consensus 232 S~h~~~~~~~a~~~---~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g~~gva 306 (312)
T PRK08999 232 SCHDAEELARAQRL---GVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHGAQGIA 306 (312)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhCCCEEE
Confidence 56777777665432 378887765443 1 247888887766678999999877 67788889999998864
No 422
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=29.20 E-value=1.3e+02 Score=31.35 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=55.0
Q ss_pred ccEEEEEeCCHHHH--HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--eCCCCCC-----CHHHHHHHHhc
Q 009824 23 GMRVLAVDDDQTCL--KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS--DVYMPDM-----DGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp~~~--~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl--Di~MPdm-----dGleLLe~Lr~ 93 (524)
..+|+|+|-.|... ..+...|.+.|..++...+..-+.-+ .. .++|.||+ |..+.++ -|--.+..+..
T Consensus 152 ~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m-~~--~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak 228 (303)
T TIGR00524 152 RIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFM-QK--GEIDAVIVGADRIARNGDVANKIGTYQLAVLAK 228 (303)
T ss_pred ceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHc-cc--cCCCEEEEcccEEecCCCEeEhhhHHHHHHHHH
Confidence 57888888787653 45677788889999987776655443 21 24898887 4455544 35555666655
Q ss_pred CCCCcEEEEecCC
Q 009824 94 EMDLPVVMLSAYS 106 (524)
Q Consensus 94 ~~diPVIvlTa~~ 106 (524)
...+||++++...
T Consensus 229 ~~~vPv~V~a~s~ 241 (303)
T TIGR00524 229 EFRIPFFVAAPLS 241 (303)
T ss_pred HhCCCEEEecccc
Confidence 6789999987643
No 423
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=29.20 E-value=4.5e+02 Score=27.35 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=51.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHH----HHHHhcCCCceEEEEeCCCCCCC--HHHHHHHHhcC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVT--NRAITAL----KMLRENRNNFDLVISDVYMPDMD--GFKLLELVGLE 94 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a--~sg~eAL----e~L~e~~~~pDLVIlDi~MPdmd--GleLLe~Lr~~ 94 (524)
..-+++++|....+..|..+=-.. .+..+ .+..+.. ..+... .-=.+++|.-||..+ |+.|++..+.
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~--~~is~h~hne~~~~~~li~~l~~g--~~valVSDAG~P~ISDPG~~LV~~a~~- 104 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKT--PLISYHEHNEKEKLPKLIPLLKKG--KSVALVSDAGTPLISDPGYELVRAARE- 104 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCC--ceecccCCcHHHHHHHHHHHHhcC--CeEEEEecCCCCcccCccHHHHHHHHH-
Confidence 356999999988887666542221 12222 3344333 334332 234678999999863 9999987753
Q ss_pred CCCcEEEEecCCCH
Q 009824 95 MDLPVVMLSAYSDT 108 (524)
Q Consensus 95 ~diPVIvlTa~~d~ 108 (524)
..++|+.+.+....
T Consensus 105 ~gi~V~~lPG~sA~ 118 (275)
T COG0313 105 AGIRVVPLPGPSAL 118 (275)
T ss_pred cCCcEEecCCccHH
Confidence 45899998877643
No 424
>PRK14967 putative methyltransferase; Provisional
Probab=29.11 E-value=5.3e+02 Score=25.00 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=32.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEe
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISD 76 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlD 76 (524)
+|..+|-++......+..++..+..+. ...+..+ .+.. ..+|+|+++
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~n 108 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSN 108 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEEC
Confidence 799999999988888887776665544 2334333 2222 359999998
No 425
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.98 E-value=3.3e+02 Score=26.34 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 34 TCLKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~s---g---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.+...+++.+++.||.+....+ . .++++.+... .+|-||+-... .+.-++++.++. .++|||++-..
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~--~~~~~~~~~~~~-~~ipvV~i~~~ 88 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQR--RMDGIIIAPGD--ERDPELVDALAS-LDLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEEEecCC--CCcHHHHHHHHh-CCCCEEEEecc
Confidence 3445666777788999875422 2 3455555544 38877764322 222345555543 46899988543
No 426
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=28.98 E-value=5.6e+02 Score=25.11 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=41.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.|+++.-.. .+.-|+.+++.+. ..+|||.. .... ..+.+..|..+++.++.+. ++..++..++..
T Consensus 279 ad~~l~~s~-~e~~~~~~~Ea~~--~g~PvI~~-~~~~---~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~ 343 (374)
T cd03817 279 ADLFVFAST-TETQGLVLLEAMA--AGLPVVAV-DAPG---LPDLVADGENGFLFPPGDE-ALAEALLRLLQD 343 (374)
T ss_pred cCEEEeccc-ccCcChHHHHHHH--cCCcEEEe-CCCC---hhhheecCceeEEeCCCCH-HHHHHHHHHHhC
Confidence 466665332 2334666777664 36788853 3322 4456677889999998777 788888877653
No 427
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=28.92 E-value=1.9e+02 Score=26.57 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=39.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
.+.+|.++.+.. ....+...... +.+++.+.+..+++++|... ++|.++.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g--~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSG--RIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcC--Ceeeeeccc
Confidence 456898888865 44445554433 67888899999999999865 499999985
No 428
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=28.82 E-value=2.5e+02 Score=28.18 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEec
Q 009824 36 LKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA 104 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~a~s---g---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa 104 (524)
...++..+++.||.+..+.. . .+.++.+.+. .+|-||+--...+....+ .+....++|||++..
T Consensus 75 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~~~~~~~~~---~l~~~~~iPvV~i~~ 144 (327)
T PRK10423 75 VRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQK--RVDGLLLLCTETHQPSRE---IMQRYPSVPTVMMDW 144 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCcchhhHH---HHHhcCCCCEEEECC
Confidence 34555667778999775432 2 2344444443 388777632111111222 233334789998853
No 429
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.74 E-value=3.2e+02 Score=26.29 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 34 TCLKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~s---g---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.....++..+++.||.+..... . .++++.+... .+|.||+....++ . ..++.+. ..++|+|++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~~ 87 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT--S-AQRAALR-RTGIPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEecc
Confidence 3445666677788999875432 2 2455555554 4898777544433 2 3355553 357899988543
No 430
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.70 E-value=1.6e+02 Score=32.36 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=58.0
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 18 ~~~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
...+....||||.-.--+.+.+-+.|.+.||.|. .+.+.+.+.+++... ..|..+.++.-+...+.+.+..+.
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~--~~d~~~~~v~~~~~~~~d~~~~~~ 147 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVF--FVDLGLQNVEADVVTAIDILKKLV 147 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhccc--ccccccceeeeccccccchhhhhh
Confidence 3344567899999999999999999988899988 567888888887622 368888888888888888887663
No 431
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=28.59 E-value=2.4e+02 Score=29.91 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=52.5
Q ss_pred CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHHHHHHHhcCCC-CcEEEEecCCCHHHHHHH
Q 009824 46 CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP---------DMDGFKLLELVGLEMD-LPVVMLSAYSDTKLVMKG 114 (524)
Q Consensus 46 ~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP---------dmdGleLLe~Lr~~~d-iPVIvlTa~~d~~~~~~a 114 (524)
.|..|. .+.+..+|.++.+. ..|.||..=.=- ...-+.|+..+....+ +|||.--+..+...+..+
T Consensus 126 ~g~~v~~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AA 202 (336)
T COG2070 126 AGIKVIHSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAA 202 (336)
T ss_pred cCCeEEEEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHH
Confidence 444444 56777777776542 367777654311 1233677777776667 999999999999999999
Q ss_pred HhcCCcEE
Q 009824 115 INHGACDY 122 (524)
Q Consensus 115 l~~GA~dY 122 (524)
+..||...
T Consensus 203 lalGA~gV 210 (336)
T COG2070 203 LALGADGV 210 (336)
T ss_pred HHhccHHH
Confidence 99999874
No 432
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.47 E-value=4.8e+02 Score=29.86 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=33.8
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC
Q 009824 24 MRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY 78 (524)
Q Consensus 24 irVLIVDDdp~~---~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~ 78 (524)
.+|.+|+-|..- ...+..+-+..++.+..+.+..+..+.++.. ..+|+||+|.-
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTa 437 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTA 437 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCC
Confidence 468888766522 2233333334566676667766666666654 35899999983
No 433
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.44 E-value=3.6e+02 Score=27.60 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE------EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcCCCCcEEEE
Q 009824 31 DDQTCLKILEKFLREC-QYEVT------VTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 31 Ddp~~~~~L~~~L~~~-gy~V~------~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr~~~diPVIvl 102 (524)
|.......++.+++.. ++.++ .+.+..+|++.|.+. .+|=||+-=.-+. .+|++.|+.+-....-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l--G~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL--GVARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4456666777777653 45554 245788899988765 3888887655553 589999876632222245777
Q ss_pred ecCCCHHHHHHHHhcCCcEEEe
Q 009824 103 SAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~ 124 (524)
-+--..+.+.+....|+..|-.
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVHS 197 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEee
Confidence 7777777777777889988864
No 434
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.33 E-value=3.2e+02 Score=30.22 Aligned_cols=104 Identities=18% Similarity=0.130 Sum_probs=61.8
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC----HHHHH---HHH
Q 009824 23 GMRVLAVD----DDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD----GFKLL---ELV 91 (524)
Q Consensus 23 ~irVLIVD----Ddp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmd----GleLL---e~L 91 (524)
..+|.|+- =+...-+.+...|...||+++. .....|+||+...-.-.+ -...+ +.+
T Consensus 23 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~ 89 (467)
T PRK14329 23 TKKLFIESYGCQMNFADSEIVASILQMAGYNTTE-------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFNAL 89 (467)
T ss_pred CCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-------------CcccCCEEEEeCcceechHHHHHHHHHHHHHHH
Confidence 34566542 3445557788888888998753 123479999987654322 22333 333
Q ss_pred h-cCCCCcEEEEecCCCHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHHHH
Q 009824 92 G-LEMDLPVVMLSAYSDTKLVMKGINH-GACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 92 r-~~~diPVIvlTa~~d~~~~~~al~~-GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
+ ..++.+|| +++..-...-.+.++. +..||+.-+-....+...+..+.
T Consensus 90 k~~~p~~~iv-vgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 90 KKKNPKLIVG-VLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred HhhCCCcEEE-EECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 3 34565555 4444322233344444 44899999988888888777654
No 435
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=28.26 E-value=6.8e+02 Score=27.63 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=42.5
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CHHH-HHHHHHhcCCCceEEEEeCCCCCCCHHHHHH---HHh
Q 009824 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTN---RAIT-ALKMLRENRNNFDLVISDVYMPDMDGFKLLE---LVG 92 (524)
Q Consensus 23 ~irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~---sg~e-ALe~L~e~~~~pDLVIlDi~MPdmdGleLLe---~Lr 92 (524)
+.+|++|+-|.. ..+.++.+.+..+..+.... +..+ +.+.++.. ...|+||+|.---...--++++ .+.
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~-~~~DvVIIDTAGr~~~d~~lm~El~~l~ 201 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF-KKADVIIVDTAGRHALEEDLIEEMKEIK 201 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh-hcCCEEEEECCCcccchHHHHHHHHHHH
Confidence 457888887753 33445555555666655432 3222 22333332 2369999998421111122332 221
Q ss_pred --cCCCCcEEEEecCCCHH
Q 009824 93 --LEMDLPVVMLSAYSDTK 109 (524)
Q Consensus 93 --~~~diPVIvlTa~~d~~ 109 (524)
..++-.++++.+....+
T Consensus 202 ~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 202 EAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred HHhcccceeEEEeccccHH
Confidence 23555566666554443
No 436
>PLN02316 synthase/transferase
Probab=28.23 E-value=7e+02 Score=30.79 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=41.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHH---------hcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGI---------NHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al---------~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
.|++++=- +-+.=|+-.++.++ ..+|+|+-..-+-.+.+...- ..+.++|+..|.+.+.|..+|.+++
T Consensus 920 ADiflmPS-~~EP~GLvqLEAMa--~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL 996 (1036)
T PLN02316 920 ADFILVPS-IFEPCGLTQLTAMR--YGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAI 996 (1036)
T ss_pred CcEEEeCC-cccCccHHHHHHHH--cCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHH
Confidence 46655422 12334666666554 345555533323333332220 1257899999999999999999887
Q ss_pred Hh
Q 009824 141 RR 142 (524)
Q Consensus 141 r~ 142 (524)
..
T Consensus 997 ~~ 998 (1036)
T PLN02316 997 SA 998 (1036)
T ss_pred hh
Confidence 64
No 437
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=28.18 E-value=17 Score=35.42 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQYE----VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL- 93 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~gy~----V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~- 93 (524)
.++.... +.+||+..++..+..++....+. ........+ ...... ...+|+++.++.||++.|++++..+..
T Consensus 12 ~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (340)
T KOG1601|consen 12 RFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPE-SFVAAT-SFSIDLSVPSLDMPGLEGFSLFVSENNP 88 (340)
T ss_pred Ccccccc-cccccccCCcccccccccccccccccccccccchhh-hhhccc-cccccccccccccccccccccccccccC
Confidence 3444444 78888888887777766653221 222222211 111110 135899999999999999998876642
Q ss_pred --CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 94 --EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 94 --~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
..++|++++............+..|+.+|+.||....++...+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 136 (340)
T KOG1601|consen 89 NSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHV 136 (340)
T ss_pred CCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCccc
Confidence 3456666676666666577777788999999998744444444433
No 438
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.08 E-value=2e+02 Score=28.44 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=31.1
Q ss_pred CceEEEEeCCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009824 69 NFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (524)
Q Consensus 69 ~pDLVIlDi~MP-----dmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~a 114 (524)
.+|+||+|=-.. =.+-=++++.|+..|.--=|++|+...+..+.+.
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 599999995332 1244456677777776667778998877665554
No 439
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=28.03 E-value=3.6e+02 Score=25.74 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~---sg~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
....+++.+++.||.+..+. +.. ++++.+... .+|.||+...-+. ..+.++.++. ..+|+|++...
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~--~~~~~~~~~~-~~ipvV~~~~~ 88 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQ--RVDGLILTVADAA--TSPALDLLDA-ERVPYVLAYND 88 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCC--chHHHHHHhh-CCCCEEEEecc
Confidence 34556666777899987653 223 344444433 4898887543332 2345555543 46898888543
No 440
>PLN02366 spermidine synthase
Probab=28.01 E-value=2.4e+02 Score=29.55 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLREC-----QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~-----gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
.|...+|.+||=|+.+.+..++.+... +-+|. ...++.+.++... ...+|+||+|..-|.
T Consensus 112 ~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 112 HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPV 177 (308)
T ss_pred CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCC
Confidence 344468999999999999988887542 22344 4466666554321 235999999986654
No 441
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=27.93 E-value=91 Score=35.19 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEeC--CCCCCCH--HHHHHHHhcCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA---ITALKMLRENRNNFDLVISDV--YMPDMDG--FKLLELVGLEMD 96 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg---~eALe~L~e~~~~pDLVIlDi--~MPdmdG--leLLe~Lr~~~d 96 (524)
++|||||.....-..|.++|+..|++|.++.+. ...++.+... .||.||+-= .-|...+ .++++++ ...
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~--~~~~IIlSpGPg~p~d~~~~~~i~~~~--~~~ 77 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATM--SNPVLMLSPGPGVPSEAGCMPELLTRL--RGK 77 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhc--CcCEEEEcCCCCChhhCCCCHHHHHHH--hcC
Confidence 589999999999999999999999888765532 1223333322 266665522 1121111 2334433 236
Q ss_pred CcEEEEe
Q 009824 97 LPVVMLS 103 (524)
Q Consensus 97 iPVIvlT 103 (524)
+||+=+.
T Consensus 78 iPILGIC 84 (531)
T PRK09522 78 LPIIGIC 84 (531)
T ss_pred CCEEEEc
Confidence 8877554
No 442
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.90 E-value=3.9e+02 Score=28.62 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=45.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~s-g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVI 100 (524)
+..|.++|.++.....++. ..++++..... -.+.++.+ .-..+|.||+-..= +.....++...+. .++..+|
T Consensus 23 g~~v~vid~~~~~~~~~~~---~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi~~~~~-~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 23 NNDVTVIDTDEERLRRLQD---RLDVRTVVGNGSSPDVLREA--GAEDADLLIAVTDS-DETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred CCcEEEEECCHHHHHHHHh---hcCEEEEEeCCCCHHHHHHc--CCCcCCEEEEecCC-hHHHHHHHHHHHHhcCCCeEE
Confidence 4566777776665443332 23455543211 12222222 12347777765421 1122233344444 3677788
Q ss_pred EEecCCCHHHHHHH---HhcCCcEEEe
Q 009824 101 MLSAYSDTKLVMKG---INHGACDYLL 124 (524)
Q Consensus 101 vlTa~~d~~~~~~a---l~~GA~dYL~ 124 (524)
+.+...+.....+. .+.||+..+.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~G~~~vi~ 123 (453)
T PRK09496 97 ARVRNPEYAEYDKLFSKEALGIDLLIS 123 (453)
T ss_pred EEECCccccchhhhhhhhcCCccEEEC
Confidence 77655443112222 4578886553
No 443
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=27.89 E-value=5.7e+02 Score=27.16 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=59.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 24 MRVLAVDDDQTCLKILEKFLREC--QYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~--gy~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
++..++.+.+. ...++.+.+.. ...|... -+.++..+.+... ..|+++.=-... .=|+.+++.+. ..+||
T Consensus 264 l~~~iiG~g~~-~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~--~~~v~v~~S~~E-g~p~~llEAma--~G~PV 337 (407)
T cd04946 264 IKWTHIGGGPL-EDTLKELAESKPENISVNFTGELSNSEVYKLYKEN--PVDVFVNLSESE-GLPVSIMEAMS--FGIPV 337 (407)
T ss_pred EEEEEEeCchH-HHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhc--CCCEEEeCCccc-cccHHHHHHHH--cCCCE
Confidence 33444554433 23344444332 2234322 2444555555432 256654322221 22455666664 35788
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCC-CCHHHHHHHHHHHHH
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKP-VRMEELKNTWQHVIR 141 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP-~~~eeL~~aI~~vlr 141 (524)
|. |..+. ..+.+..|.++++..+ .+.+++..++..++.
T Consensus 338 Ia-s~vgg---~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 338 IA-TNVGG---TPEIVDNGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred Ee-CCCCC---cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 76 44443 3456778888998876 588999999998875
No 444
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=27.72 E-value=3.6e+02 Score=26.98 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeC-CC--CCCCHHHHHHHHh----c-CCCCcEEEEecCCCHHHHH
Q 009824 43 LRECQYEV--TVTNRAITALKMLRENRNNFDLVISDV-YM--PDMDGFKLLELVG----L-EMDLPVVMLSAYSDTKLVM 112 (524)
Q Consensus 43 L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi-~M--PdmdGleLLe~Lr----~-~~diPVIvlTa~~d~~~~~ 112 (524)
|+..|+.| +.+.+..+|+.+.... .+.|=-=+ +| -+.||.++++.+. . ..++. |+..+..+...+.
T Consensus 101 L~~~Gi~vn~T~ifs~~Qa~~Aa~aG---a~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tk-ILaAS~r~~~~v~ 176 (222)
T PRK12656 101 LKAEGYHITATAIYTVFQGLLAIEAG---ADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSK-ILAASFKNVAQVN 176 (222)
T ss_pred HHHCCCceEEeeeCCHHHHHHHHHCC---CCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCE-EEEEecCCHHHHH
Confidence 44445543 4566777777766533 23221100 22 3569998886542 2 33444 4556677788899
Q ss_pred HHHhcCCcEEEeCC
Q 009824 113 KGINHGACDYLLKP 126 (524)
Q Consensus 113 ~al~~GA~dYL~KP 126 (524)
++...||+..-.-|
T Consensus 177 ~a~~~G~d~vTvp~ 190 (222)
T PRK12656 177 KAFALGAQAVTAGP 190 (222)
T ss_pred HHHHcCCCEEecCH
Confidence 99999987765544
No 445
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.49 E-value=4.8e+02 Score=28.77 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=57.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH--HHHHHHhcCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGF--KLLELVGLEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl--eLLe~Lr~~~diP 98 (524)
..+|+=||=.+......+.-.+..+.. +. .+.++++......+ ...||+||+| |-..|. ++++.|.......
T Consensus 315 ~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~-~~~~d~VvvD---PPR~G~~~~~lk~l~~~~p~~ 390 (432)
T COG2265 315 VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE-GYKPDVVVVD---PPRAGADREVLKQLAKLKPKR 390 (432)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc-cCCCCEEEEC---CCCCCCCHHHHHHHHhcCCCc
Confidence 468999999999998888888877665 44 55777777766542 2359999999 444444 4778886666667
Q ss_pred EEEEecCC
Q 009824 99 VVMLSAYS 106 (524)
Q Consensus 99 VIvlTa~~ 106 (524)
||.+|-+.
T Consensus 391 IvYVSCNP 398 (432)
T COG2265 391 IVYVSCNP 398 (432)
T ss_pred EEEEeCCH
Confidence 77777654
No 446
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=27.46 E-value=5.6e+02 Score=25.82 Aligned_cols=80 Identities=24% Similarity=0.211 Sum_probs=49.5
Q ss_pred hCCCeEEEECCH--------HHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHH
Q 009824 45 ECQYEVTVTNRA--------ITALK-MLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 45 ~~gy~V~~a~sg--------~eALe-~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al 115 (524)
+.+.+|..+.++ +.+.. ++++. .||.||.----|..-|-.-.+.+-...++|.|+++.-.......+.-
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~~--~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdele 106 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEEF--NPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELE 106 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHH
Confidence 346777665543 23333 34333 48988876666667777777766556789999998777554444444
Q ss_pred hcCCcEEEeCC
Q 009824 116 NHGACDYLLKP 126 (524)
Q Consensus 116 ~~GA~dYL~KP 126 (524)
+.|.-+.|+|+
T Consensus 107 eqGlGYIivk~ 117 (277)
T COG1927 107 EQGLGYIIVKA 117 (277)
T ss_pred hcCCeEEEecC
Confidence 55655556664
No 447
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.44 E-value=2.9e+02 Score=29.34 Aligned_cols=77 Identities=10% Similarity=0.138 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009824 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~ 113 (524)
.....|.++-++.|..+.+..=..++++.+.+. ++-++=+--.++.-+.||+.+.. ...|||+=|+..+.+.+..
T Consensus 76 e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~----~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGmatl~Ei~~ 150 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTPFDLESADFLEDL----GVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGMATLEEIEA 150 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc----CCCEEEECcccccCHHHHHHHHh-cCCcEEEECCCCCHHHHHH
Confidence 345556666677788887655556677777543 33344555567778999998854 3679999999998887776
Q ss_pred HH
Q 009824 114 GI 115 (524)
Q Consensus 114 al 115 (524)
|+
T Consensus 151 Av 152 (329)
T TIGR03569 151 AV 152 (329)
T ss_pred HH
Confidence 66
No 448
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=27.35 E-value=3.4e+02 Score=28.66 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 009824 24 MRVLAVDDDQTCL----KILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (524)
Q Consensus 24 irVLIVDDdp~~~----~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~ 90 (524)
-|||||-|..... +.+...|+..++++..+. +..++++.+++. .+|+||- +-|..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 4788888765433 467777877677665443 234566666554 4888764 345566666654
Q ss_pred H
Q 009824 91 V 91 (524)
Q Consensus 91 L 91 (524)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 4
No 449
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=27.22 E-value=6.5e+02 Score=26.75 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCeEEE--E---CCHHHHHHHHHhcCCCceEEEEeCCCC-----------------------CCCHHH
Q 009824 35 CLKILEKFLRECQYEVTV--T---NRAITALKMLRENRNNFDLVISDVYMP-----------------------DMDGFK 86 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~--a---~sg~eALe~L~e~~~~pDLVIlDi~MP-----------------------dmdGle 86 (524)
..+.++.+.+..++.|.. + .+.++|..+ .+. .+|.|.+.-.=. +....+
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l-~~~--Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRL-ADA--GVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHH-HHc--CCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 346666666655555542 2 344455444 332 478777643210 111223
Q ss_pred HHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 87 LLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 87 LLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+..++.. .++|||...+-.+...+.+++..||+.+-.
T Consensus 251 ~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44444443 579999999999999999999999998754
No 450
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=27.17 E-value=4.1e+02 Score=22.96 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=40.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhc--CCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLREN--RNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~--~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
|||.||.|. ... ..++-.|.+.. .+.+.+++.+.+++- ..++.+|++.=.+-..=- +.++.+......|+|
T Consensus 1 mkIaVIGD~-dtv----~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~-e~i~~~~~~~~~P~i 74 (100)
T PRK02228 1 MEIAVIGSP-EFT----TGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLP-RRLRRTLEESVEPTV 74 (100)
T ss_pred CEEEEEeCH-HHH----HHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhH-HHHHHHHhcCCCCEE
Confidence 678888883 332 23344577643 456655555555432 346888888765422111 233333334566766
Q ss_pred EEec
Q 009824 101 MLSA 104 (524)
Q Consensus 101 vlTa 104 (524)
+.-.
T Consensus 75 i~IP 78 (100)
T PRK02228 75 VTLG 78 (100)
T ss_pred EEEC
Confidence 5544
No 451
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=27.15 E-value=1.3e+02 Score=22.10 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=32.0
Q ss_pred EeeHHHHHHHHHHHHHcCCCCCchHHHHhhcCCCCCCHHhHHhhh
Q 009824 195 VWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVKFRL 239 (524)
Q Consensus 195 vw~veLh~kflaavn~LGl~~avPk~IL~lmk~~~LT~eevk~rL 239 (524)
-|+.+....|+.++.++|-. --+.|.+.+. .+.|..+++.+-
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~ 44 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRY 44 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHH
Confidence 58999999999999998876 4457776666 688998876543
No 452
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.00 E-value=5.3e+02 Score=24.76 Aligned_cols=82 Identities=11% Similarity=-0.033 Sum_probs=49.3
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC
Q 009824 49 EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127 (524)
Q Consensus 49 ~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~ 127 (524)
-|....+.+++++.++.-- +-.+=++.+.+...+..++++.++. .+.+.+=.-| --..+.+..|++.||+..++--+
T Consensus 16 ~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gt-vl~~d~~~~A~~~gAdgv~~p~~ 93 (187)
T PRK07455 16 AVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGT-ILTLEDLEEAIAAGAQFCFTPHV 93 (187)
T ss_pred EEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEE-EEcHHHHHHHHHcCCCEEECCCC
Confidence 3456677777777665421 1235566777777888888877753 2322110111 11236788889999988877556
Q ss_pred CHHHH
Q 009824 128 RMEEL 132 (524)
Q Consensus 128 ~~eeL 132 (524)
+.+.+
T Consensus 94 ~~~~~ 98 (187)
T PRK07455 94 DPELI 98 (187)
T ss_pred CHHHH
Confidence 65543
No 453
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=26.97 E-value=2.7e+02 Score=30.92 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.++.+.+.+. .+|+|++|..-.. ..-++.+++++.. +++|||+ -.-.+.+.+..++++||+...+
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEE
Confidence 4555555443 3899999975333 3445667777644 5888887 5666788899999999988753
No 454
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=26.92 E-value=3.3e+02 Score=27.54 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=57.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH-HHHHH-hcCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK-LLELV-GLEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGle-LLe~L-r~~~diPVIv 101 (524)
-.|||-..-.-+-..|.+.+.+.|-+|..|..-++.|+........+--+++|+ .|.++.+ +++++ +.+|.+-|++
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv--~d~~~~~~lvewLkk~~P~lNvli 83 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDV--ADRDSRRELVEWLKKEYPNLNVLI 83 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecc--cchhhHHHHHHHHHhhCCchheee
Confidence 458888888888888888888889999999888888887765542334456665 5667665 66888 4677777776
Q ss_pred Ee
Q 009824 102 LS 103 (524)
Q Consensus 102 lT 103 (524)
=-
T Consensus 84 NN 85 (245)
T COG3967 84 NN 85 (245)
T ss_pred ec
Confidence 43
No 455
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.82 E-value=3e+02 Score=28.46 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=50.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC--CC---CC--CCHHHHHHHHhcCCCCcEEEEecCC-CHHHHHHHHhcCCcEEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDV--YM---PD--MDGFKLLELVGLEMDLPVVMLSAYS-DTKLVMKGINHGACDYL 123 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi--~M---Pd--mdGleLLe~Lr~~~diPVIvlTa~~-d~~~~~~al~~GA~dYL 123 (524)
.+++.++|.+..++. .+|.+-+-+ .- |+ .=|++.++.++...++|+++.-+.+ ..+.+.++++.|++.+=
T Consensus 151 s~t~~eea~~f~~~t--g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEET--DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhh--CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 367888888887643 378777622 21 22 2488899988777789999887333 55678889999998875
Q ss_pred e
Q 009824 124 L 124 (524)
Q Consensus 124 ~ 124 (524)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 456
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.53 E-value=2.5e+02 Score=27.81 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=34.7
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 70 FDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 70 pDLVIlDi~MPdmdG-------leLLe~Lr~-----~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.|.|++=-.-|+..| ++-++.++. ..++||.+. +--+.+.+.++.++||+.++.
T Consensus 129 ~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd-GGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 129 VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID-GGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE-CCCCHHHHHHHHHcCCCEEEE
Confidence 677777556677655 333344432 124666654 444588899999999998865
No 457
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.51 E-value=4.7e+02 Score=26.01 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCC---CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 54 NRAITALKMLRENRNNFDLVISDVYMP---DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pDLVIlDi~MP---dmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.+..+..+.+... +---+.|.|+.-- ...-+++++.++...++||++--+-.+.+.+.+++..||+..+.-
T Consensus 30 ~d~~~~a~~~~~~-G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 30 GDPVELAKRYNEE-GADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred CCHHHHHHHHHHc-CCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4666666666543 2234788888642 233466778887667899999999999999999999998887664
No 458
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=26.48 E-value=9.6e+02 Score=28.67 Aligned_cols=115 Identities=16% Similarity=0.229 Sum_probs=74.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh----CCCeEE-EECCHHHHHHH----------------HHhcCCCceEEEEeCCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE----CQYEVT-VTNRAITALKM----------------LRENRNNFDLVISDVYMP 80 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~----~gy~V~-~a~sg~eALe~----------------L~e~~~~pDLVIlDi~MP 80 (524)
...+|+|...+|.....+..++++ .|.+|. .+.++.|.++. +. .+-+|++++|++--
T Consensus 236 ~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~--TGavD~~VvD~QCi 313 (781)
T PRK00941 236 SKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIR--SGIPDVIVVDEQCV 313 (781)
T ss_pred CCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHH--cCCCcEEEEecccC
Confidence 467899999999999999888763 267766 55666665422 22 24589999999754
Q ss_pred CCCHHHHHHHHhcCCCCcEEEEec----------CCCHHHHHHHHhcCC--cEEEeCCCCHHHHHHHHHHHHHh
Q 009824 81 DMDGFKLLELVGLEMDLPVVMLSA----------YSDTKLVMKGINHGA--CDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 81 dmdGleLLe~Lr~~~diPVIvlTa----------~~d~~~~~~al~~GA--~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
--+=.++.+. .++++|-+|. +.+.+.+.+.+..|- -.++.-|....|+.-.+...+..
T Consensus 314 ~p~L~eiA~~----ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~~ 383 (781)
T PRK00941 314 RTDILEEAKK----LGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVAP 383 (781)
T ss_pred cccHHHHHHH----hCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHhh
Confidence 4444444433 3455555543 345666666665443 45677788888877666555543
No 459
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=26.46 E-value=7.3e+02 Score=25.59 Aligned_cols=42 Identities=14% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+|+|.+....+.. +.+..|+. ++. |-+.++|..++..++.
T Consensus 292 ~g~PvI~~~~~~~~~---e~~~~g~~-~lv-~~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 292 LGKPVLVLRDTTERP---ETVEAGTN-KLV-GTDKENITKAAKRLLT 333 (365)
T ss_pred cCCCEEECCCCCCCh---HHHhcCce-EEe-CCCHHHHHHHHHHHHh
Confidence 468988874333322 34455644 444 5688889888887764
No 460
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=26.43 E-value=1.8e+02 Score=26.75 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
..++++.++.. .+|+||+|. ++..- .....+ ...+..||++|..
T Consensus 80 ~~~~~~~~~~~--~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDAA--GFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHhc--CCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 35566666543 599999999 66542 222323 2346677777766
No 461
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.26 E-value=2.3e+02 Score=30.16 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=51.6
Q ss_pred ccEEEEEeCCHHHH--HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCCC-----CHHHHHHHHhc
Q 009824 23 GMRVLAVDDDQTCL--KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV--YMPDM-----DGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp~~~--~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi--~MPdm-----dGleLLe~Lr~ 93 (524)
..+|++.|.-|... +.+...|.+.|..|+...+..-+.-+-+ ..+|.||+.. .+.+. -|--.+..+..
T Consensus 170 ~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~---~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak 246 (329)
T PRK06371 170 NIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRK---KEIDLVIVGADRIASNGDFANKIGTYEKAVLAK 246 (329)
T ss_pred eeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhh---cCCCEEEECccEEecCCCEeehhhHHHHHHHHH
Confidence 46788877777644 2346778888999997766655544422 2489999844 44433 24445555555
Q ss_pred CCCCcEEEEec
Q 009824 94 EMDLPVVMLSA 104 (524)
Q Consensus 94 ~~diPVIvlTa 104 (524)
..++|++++..
T Consensus 247 ~~~VPfyV~a~ 257 (329)
T PRK06371 247 VNGIPFYVAAP 257 (329)
T ss_pred HcCCCEEEecc
Confidence 67899998875
No 462
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=26.24 E-value=5.9e+02 Score=25.17 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=42.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHH
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELV 91 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~L 91 (524)
+.+|..||=++...+..++.+...+. .+. ...+..+..... ...+|+|++...+.-. +-.++++.+
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~~~~~~~~~l~~~ 135 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFHAVLEWVADPKSVLQTL 135 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEehhHHHhhCCHHHHHHHH
Confidence 46899999999999999988877654 233 334555433222 2359999987765432 333455544
No 463
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.23 E-value=3.1e+02 Score=27.57 Aligned_cols=74 Identities=8% Similarity=0.105 Sum_probs=43.7
Q ss_pred EEEEEeCCH-HHHHHHHHHHHhCCCeEEEEC-------------CHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHH
Q 009824 25 RVLAVDDDQ-TCLKILEKFLRECQYEVTVTN-------------RAITALKMLREN-RNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 25 rVLIVDDdp-~~~~~L~~~L~~~gy~V~~a~-------------sg~eALe~L~e~-~~~pDLVIlDi~MPdmdGleLLe 89 (524)
||-|+-..+ .+-+.+..+|+..|++|+... +.+...+++++. ..++|.|++= --.+..+++++
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifis--CTnLrt~~vi~ 199 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLS--CTALRAATCAQ 199 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEe--CCCchhHHHHH
Confidence 677777664 444578888888899887431 334444444432 2246655543 23445666666
Q ss_pred HHhcCCCCcEE
Q 009824 90 LVGLEMDLPVV 100 (524)
Q Consensus 90 ~Lr~~~diPVI 100 (524)
.+...-.+|||
T Consensus 200 ~lE~~lGkPVl 210 (239)
T TIGR02990 200 RIEQAIGKPVV 210 (239)
T ss_pred HHHHHHCCCEE
Confidence 66555667774
No 464
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=26.19 E-value=1.1e+02 Score=31.00 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=37.1
Q ss_pred EEEEeCCHHHHH----------HHHHHHHhCCCeEEEEC--CHHHHHHHHHhc---CCCceEEEEeCCC
Q 009824 26 VLAVDDDQTCLK----------ILEKFLRECQYEVTVTN--RAITALKMLREN---RNNFDLVISDVYM 79 (524)
Q Consensus 26 VLIVDDdp~~~~----------~L~~~L~~~gy~V~~a~--sg~eALe~L~e~---~~~pDLVIlDi~M 79 (524)
|.|||.+..-++ -|....+.+|++|+.+. +.++..+.+.+. .++|-+||+|..+
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 788888755443 36677778899999775 455555555432 3479999998754
No 465
>PRK08185 hypothetical protein; Provisional
Probab=26.17 E-value=2.4e+02 Score=29.35 Aligned_cols=82 Identities=13% Similarity=0.300 Sum_probs=53.7
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeC-----C-----CCCCCHHHHHHHHhcCCCCcEEEEecCC-CHHHHHHHHhcCCcE
Q 009824 53 TNRAITALKMLRENRNNFDLVISDV-----Y-----MPDMDGFKLLELVGLEMDLPVVMLSAYS-DTKLVMKGINHGACD 121 (524)
Q Consensus 53 a~sg~eALe~L~e~~~~pDLVIlDi-----~-----MPdmdGleLLe~Lr~~~diPVIvlTa~~-d~~~~~~al~~GA~d 121 (524)
.++.++|.+.++.. .+|.+-+-+ . -|+.+ +++++.|+...++|+++.-+.+ ..+...++++.|++-
T Consensus 148 ~t~peea~~f~~~T--gvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRT--GVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhh--CCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 44788888887753 378777733 1 24555 8899988766789999886653 456678899999765
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 009824 122 YLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 122 YL~KP~~~eeL~~aI~~vlr 141 (524)
+=.- .+|..+....++
T Consensus 225 iNi~----T~l~~a~~~~~~ 240 (283)
T PRK08185 225 INIS----SDMKYAFFKKVR 240 (283)
T ss_pred EEeC----hHHHHHHHHHHH
Confidence 4321 344444444443
No 466
>PRK01581 speE spermidine synthase; Validated
Probab=26.17 E-value=4e+02 Score=28.91 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=37.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHH--HH---hC---CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 009824 21 PIGMRVLAVDDDQTCLKILEKF--LR---EC---QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~--L~---~~---gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP 80 (524)
+...+|.+||=++.+.+..+.. |. +. +-+|. ...++.+.+.. ....+|+||+|+--|
T Consensus 172 ~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~---~~~~YDVIIvDl~DP 237 (374)
T PRK01581 172 ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS---PSSLYDVIIIDFPDP 237 (374)
T ss_pred CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh---cCCCccEEEEcCCCc
Confidence 4446899999999999888862 22 11 23454 45677766543 334699999997433
No 467
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.16 E-value=5.8e+02 Score=28.51 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=60.9
Q ss_pred ccEEEEEeCCHH----HHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC------CC-----CCH
Q 009824 23 GMRVLAVDDDQT----CLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYM------PD-----MDG 84 (524)
Q Consensus 23 ~irVLIVDDdp~----~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~M------Pd-----mdG 84 (524)
++.+++||-..- ..+.++++=+.+ +..|. -+.+.++|..++.. ..|.|-+.+-- .. .--
T Consensus 239 Gvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a---Gad~v~vgig~gsictt~~~~~~~~p~ 315 (479)
T PRK07807 239 GVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA---GADIVKVGVGPGAMCTTRMMTGVGRPQ 315 (479)
T ss_pred CCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc---CCCEEEECccCCcccccccccCCchhH
Confidence 567888884433 222333322232 33443 25677888887763 37888644321 11 122
Q ss_pred HHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr---~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.++..+. ...++|||.--+......+.+++.+||+....
T Consensus 316 ~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 316 FSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeec
Confidence 33443332 24579999999999999999999999998775
No 468
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=26.15 E-value=5e+02 Score=25.30 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH--HHHHHHhcC---CC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGF--KLLELVGLE---MD 96 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~-V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGl--eLLe~Lr~~---~d 96 (524)
.+|..||-++...+.++.-++..+.. +. ...+..+.+. .....+|+|++|- |-..|+ ++++.|... ..
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~---~~~~~fDlV~~DP--Py~~g~~~~~l~~l~~~~~l~~ 151 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA---QPGTPHNVVFVDP--PFRKGLLEETINLLEDNGWLAD 151 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh---hcCCCceEEEECC--CCCCChHHHHHHHHHHCCCcCC
Confidence 47999999999999999998876642 33 3345544432 2223599999985 434443 455666432 23
Q ss_pred CcEEEEecCC
Q 009824 97 LPVVMLSAYS 106 (524)
Q Consensus 97 iPVIvlTa~~ 106 (524)
-.||++....
T Consensus 152 ~~iv~ve~~~ 161 (199)
T PRK10909 152 EALIYVESEV 161 (199)
T ss_pred CcEEEEEecC
Confidence 3466665443
No 469
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.12 E-value=3.2e+02 Score=28.64 Aligned_cols=76 Identities=11% Similarity=0.141 Sum_probs=46.8
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 24 MRVLAVDDDQTC---LKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 24 irVLIVDDdp~~---~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
-|+|||-|.... .+.+...|++.+.++..+. +..++.+..++. ++|+||- +-|+.-+++.+.+
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~iia---vGGGs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQ--EADMIFA---VGGGKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhc--CCCEEEE---eCCcHHHHHHHHH
Confidence 578888886543 3456666766666554221 234455555443 4888874 4577777777777
Q ss_pred hcCCCCcEEEEec
Q 009824 92 GLEMDLPVVMLSA 104 (524)
Q Consensus 92 r~~~diPVIvlTa 104 (524)
.....+|+|.+-.
T Consensus 98 a~~~~~p~i~VPT 110 (345)
T cd08171 98 ADKLGKPVFTFPT 110 (345)
T ss_pred HHHcCCCEEEecC
Confidence 5444678877743
No 470
>PRK03612 spermidine synthase; Provisional
Probab=26.11 E-value=3.9e+02 Score=30.01 Aligned_cols=58 Identities=29% Similarity=0.348 Sum_probs=38.4
Q ss_pred CCccEEEEEeCCHHHHHHHHH--HHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 21 PIGMRVLAVDDDQTCLKILEK--FLREC------QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~--~L~~~------gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
|..-+|.+||=|+.+.+..++ .+.+. +-++. ...|+.+.++ .....+|+||+|.--|.
T Consensus 319 ~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 319 PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCCCCCCEEEEeCCCCC
Confidence 433689999999999999988 44321 12343 3456665544 33346999999976554
No 471
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=26.10 E-value=4.5e+02 Score=26.13 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh---cCCcEEEe------
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGIN---HGACDYLL------ 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~---~GA~dYL~------ 124 (524)
.+..+.+.+.. --.+++.|+..-++ -.+++++.++...++|||.-.+-.+.+.+.++.+ .||++.+.
T Consensus 149 ~~~~~~l~~~G-~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 149 WEVLERLDSAG-CSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred HHHHHHHHhcC-CCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 45555554332 22488888865432 2467777776667899999888888888888764 49998766
Q ss_pred CCCCHHHHHHH
Q 009824 125 KPVRMEELKNT 135 (524)
Q Consensus 125 KP~~~eeL~~a 135 (524)
.+++.++++..
T Consensus 228 g~~~~~~~~~~ 238 (241)
T PRK14024 228 GAFTLPEALAV 238 (241)
T ss_pred CCCCHHHHHHH
Confidence 35666655443
No 472
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=25.82 E-value=6.1e+02 Score=26.56 Aligned_cols=87 Identities=20% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCeEEE--E---CCHHHHHHHHHhcCCCceEEEEeCC------------CCCC---------C-H---
Q 009824 35 CLKILEKFLRECQYEVTV--T---NRAITALKMLRENRNNFDLVISDVY------------MPDM---------D-G--- 84 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~--a---~sg~eALe~L~e~~~~pDLVIlDi~------------MPdm---------d-G--- 84 (524)
+.+.|+.+.+...+.|.. . .+.++|..+ .+. .+|.|.+.-. -+.. + |
T Consensus 166 ~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l-~~~--Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t 242 (326)
T cd02811 166 WLERIEELVKALSVPVIVKEVGFGISRETAKRL-ADA--GVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT 242 (326)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHH-HHc--CCCEEEECCCCCCcccccccccccccccccccccccccccH
Confidence 446777777765555442 2 345555444 332 3788775431 0000 1 3
Q ss_pred HHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.+..++. ..++|||...+-.+...+.+++..||+.+-.
T Consensus 243 ~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i 283 (326)
T cd02811 243 AASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGM 283 (326)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 233434433 3389999999999999999999999988744
No 473
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=25.75 E-value=3.8e+02 Score=25.94 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHHHhcCCCCcEEEEec
Q 009824 34 TCLKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMD--GFKLLELVGLEMDLPVVMLSA 104 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~s---g---~eALe~L~e~~~~pDLVIlDi~MPdmd--GleLLe~Lr~~~diPVIvlTa 104 (524)
.+...+++.+++.||.+..+.. . .++++.+... .+|.+|+--..+... ..+.++.++ ..++|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~~~~~~~~~~~~~~~~-~~~ipvV~~~~ 91 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQ--GIDGLIIEPTKSALPNPNIDLYLKLE-KLGIPYVFINA 91 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeccccccccccHHHHHHHH-HCCCCEEEEec
Confidence 4455667777778999886532 2 3445555544 489888733222111 113444442 34689988854
No 474
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=25.68 E-value=4e+02 Score=26.60 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHh----c-CCCCcEEEEecCCCHHHH
Q 009824 42 FLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDV---YMPDMDGFKLLELVG----L-EMDLPVVMLSAYSDTKLV 111 (524)
Q Consensus 42 ~L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi---~MPdmdGleLLe~Lr----~-~~diPVIvlTa~~d~~~~ 111 (524)
.|+..|+.+ +.+.+..+|+-..... .+.|--=+ .--+.||+++++.+. . ..++.| +..+..+...+
T Consensus 98 ~L~~~GI~vn~T~vfs~~Qa~~Aa~aG---a~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkI-LaAS~r~~~~v 173 (220)
T PRK12655 98 KLKKEGIPTLGTAVYSAAQGLLAALAG---AKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMV-LAASFKTPRQA 173 (220)
T ss_pred HHHHCCCceeEeEecCHHHHHHHHHcC---CeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEE-EEEecCCHHHH
Confidence 355556654 4567777776555432 33221111 124679999887553 2 234444 45556677888
Q ss_pred HHHHhcCCcEEEeCC
Q 009824 112 MKGINHGACDYLLKP 126 (524)
Q Consensus 112 ~~al~~GA~dYL~KP 126 (524)
.+++..|++.+-.-|
T Consensus 174 ~~~~~~G~d~vTip~ 188 (220)
T PRK12655 174 LDCLLAGCQSITLPL 188 (220)
T ss_pred HHHHHcCCCEEECCH
Confidence 888889988776544
No 475
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.67 E-value=2.3e+02 Score=29.77 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.++.+.++...++|||+.....+.+.+.++++.|.+|++.
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4666778777789999999999999999999999888765
No 476
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.60 E-value=3.8e+02 Score=28.31 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=40.2
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 24 MRVLAVDDDQT-CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 24 irVLIVDDdp~-~~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
-|+|||-|... ....+...|++.++++..+. +..++.+.+++. .+|+||- .-|..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREF--GPDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCCcHHHHHHHHH
Confidence 37888877655 45667888887777665442 245666777654 4898763 3455556655544
No 477
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=25.57 E-value=4e+02 Score=26.59 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=48.3
Q ss_pred HHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeC-CC--CCCCHHHHHHHHh----c-CCCCcEEEEecCCCHHHH
Q 009824 42 FLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDV-YM--PDMDGFKLLELVG----L-EMDLPVVMLSAYSDTKLV 111 (524)
Q Consensus 42 ~L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi-~M--PdmdGleLLe~Lr----~-~~diPVIvlTa~~d~~~~ 111 (524)
.|+..|..| +.+.+..+|+-..... .+.|--=+ +| -+.||+++++.+. . ..++. |+..+..+...+
T Consensus 98 ~L~~~GI~vn~T~vfs~~Qa~~Aa~aG---a~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tk-ILaAS~r~~~~v 173 (220)
T PRK12653 98 MLKAEGIPTLGTAVYGAAQGLLSALAG---AEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAK-VLAASFKTPRQA 173 (220)
T ss_pred HHHHcCCCeeEEEecCHHHHHHHHhcC---CcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcE-EEEEecCCHHHH
Confidence 355556654 4567777777665432 33322111 12 3679999887553 2 23444 445556677788
Q ss_pred HHHHhcCCcEEEeCC
Q 009824 112 MKGINHGACDYLLKP 126 (524)
Q Consensus 112 ~~al~~GA~dYL~KP 126 (524)
.+++..|++.+-.-|
T Consensus 174 ~~~~~~G~d~vTip~ 188 (220)
T PRK12653 174 LDCLLAGCESITLPL 188 (220)
T ss_pred HHHHHcCCCEEECCH
Confidence 888899998876544
No 478
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.52 E-value=3.3e+02 Score=28.97 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=23.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTV 52 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~ 52 (524)
+|||+.....+-...+..|+..|+.|..
T Consensus 78 ~VLIIGGp~AVs~~yE~~Lks~GitV~R 105 (337)
T COG2247 78 LVLIIGGPIAVSPNYENALKSLGITVKR 105 (337)
T ss_pred eEEEECCCCcCChhHHHHHHhCCcEEEE
Confidence 5888888888888888888888887764
No 479
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=25.48 E-value=4.2e+02 Score=25.31 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 35 CLKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s---g---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
....+++.++..||.+..+.. . .++++.+... .+|-||+.-..+. -+.++.+. ...+|||++.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~---~~~~~~~~-~~~ipvv~~~ 85 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSR--RPAGLILTGLEHT---ERTRQLLR-AAGIPVVEIM 85 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHc--CCCEEEEeCCCCC---HHHHHHHH-hcCCCEEEEe
Confidence 335666677788999876432 1 3455555543 3887777543332 23344443 2368999884
No 480
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=25.44 E-value=3.9e+02 Score=28.17 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.++.+.++...++|||..-...+.+.+.++++.|..|++.
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 4456777777789999888888999999999999888764
No 481
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=25.44 E-value=3e+02 Score=27.39 Aligned_cols=75 Identities=7% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCeEEE-ECCHHH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCH
Q 009824 34 TCLKILEKFLRECQYEVTV-TNRAIT---ALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDT 108 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~-a~sg~e---ALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~ 108 (524)
...+.|+..++..+-.|.. ++-|.+ .+.++.+....+.+|++|..+.-...+++++.+.....+.++++......
T Consensus 27 ~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~~~ 105 (241)
T PRK02090 27 SAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDASA 105 (241)
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCccH
Confidence 3456678888776655543 343444 44455544345789999988876678888887765567888888876543
No 482
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=25.41 E-value=3.8e+02 Score=27.88 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTVT-----NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy-~V~~a-----~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~di 97 (524)
-|++||-|... .+.+...|+..+. .+..+ .+.++..+.+.... ++|+||. .-|..-+++.+.+.....+
T Consensus 26 ~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~~ 100 (331)
T cd08174 26 GRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRGI 100 (331)
T ss_pred CceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcCC
Confidence 47888887655 5567777766544 33332 34556666666543 5788773 4567777777777555678
Q ss_pred cEEEEe
Q 009824 98 PVVMLS 103 (524)
Q Consensus 98 PVIvlT 103 (524)
|+|.+.
T Consensus 101 p~i~vP 106 (331)
T cd08174 101 PLSVPT 106 (331)
T ss_pred CEEEec
Confidence 887774
No 483
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=25.33 E-value=1.5e+02 Score=30.77 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=59.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-Hhc--CCCCcEE
Q 009824 26 VLAVDDDQTCLKILEKFLREC--QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL-VGL--EMDLPVV 100 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~--gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~-Lr~--~~diPVI 100 (524)
|=.|-.+|......+.+|++. +++++.+.+..+|.+++.+..+.....|.--.--..-|++++.. |.. .-.+++|
T Consensus 99 Ik~vySHpqalaQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA~~YgL~il~~~I~D~~~N~TRF~ 178 (279)
T COG0077 99 IKTVYSHPQALAQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAAELYGLDILAENIEDEPNNRTRFL 178 (279)
T ss_pred CeEEEeCcHHHHHHHHHHHHcCCCceEEEcCCHHHHHHHHHhCCCcCeeEEcCHHHHHHcCcHhHhhcccCCCCCeEEEE
Confidence 344667899999999999987 68899999999999999875444555555444456788888864 643 3357999
Q ss_pred EEecC
Q 009824 101 MLSAY 105 (524)
Q Consensus 101 vlTa~ 105 (524)
+++..
T Consensus 179 vl~r~ 183 (279)
T COG0077 179 VLSRR 183 (279)
T ss_pred EEecc
Confidence 99854
No 484
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.32 E-value=7.3e+02 Score=25.23 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=59.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-E-CCH-HHHHHHHHhcCCCceEE-EEeC-CCCC------CCHHHHHHHHhcC
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVTV-T-NRA-ITALKMLRENRNNFDLV-ISDV-YMPD------MDGFKLLELVGLE 94 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~~-a-~sg-~eALe~L~e~~~~pDLV-IlDi-~MPd------mdGleLLe~Lr~~ 94 (524)
|+|.|=.......+...+++.|...+. + .+. .+=++.+.+.. .+.| ++-. --.+ .+..++++.++..
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 455555555555666666777876553 2 222 34444444433 3433 2122 1011 1345578888877
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
.++||++=.+-.+.+.+.++... |++.++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 78999998888899999998875 99988754
No 485
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=25.30 E-value=3e+02 Score=29.73 Aligned_cols=63 Identities=19% Similarity=0.109 Sum_probs=38.8
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 009824 24 MRVLAVDDDQTC----LKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (524)
Q Consensus 24 irVLIVDDdp~~----~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~ 90 (524)
-++|||-|.... .+.+...|++.|.++..+. ...++.+.+++.. +|+||- .-|.+-++..+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~--~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESG--CDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCChHHHHHHHH
Confidence 467888775332 3457777877777665542 2456777777654 998875 345555555544
Q ss_pred H
Q 009824 91 V 91 (524)
Q Consensus 91 L 91 (524)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 3
No 486
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.26 E-value=1.9e+02 Score=30.55 Aligned_cols=40 Identities=5% Similarity=0.092 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.++.+.++...++|||......+.+.+.++++.|.+|++.
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 4667778777789999998888999999999999777653
No 487
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.22 E-value=3e+02 Score=27.75 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCeEEEEC---C--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCC
Q 009824 35 CLKILEKFLRECQYEVTVTN---R--AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYS 106 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~---s--g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~ 106 (524)
+...+++.+++.||.+..+. + .+++++.+.+.. +|=||+=-. ..+ .+-+..+... ++|||++-...
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~--vDGiI~~s~--~~~-~~~l~~~~~~-~iPvV~~~~~~ 89 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRR--VDGIILASS--END-DEELRRLIKS-GIPVVLIDRYI 89 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTT--SSEEEEESS--SCT-CHHHHHHHHT-TSEEEEESS-S
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcC--CCEEEEecc--cCC-hHHHHHHHHc-CCCEEEEEecc
Confidence 34456666777899987443 2 235666776654 775555422 223 2333333223 78999887663
No 488
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.21 E-value=2.5e+02 Score=24.32 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhcCCCCcEEEEecCCCHH
Q 009824 32 DQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGLEMDLPVVMLSAYSDTK 109 (524)
Q Consensus 32 dp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLLe~Lr~~~diPVIvlTa~~d~~ 109 (524)
.......++..|...|+.+....+.......+... .+-|++|+ +-.++. +-+++++..+. .++|||.+|...+..
T Consensus 11 S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~-~g~~vi~iT~~~~s~ 87 (128)
T cd05014 11 SGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKR-RGAPIIAITGNPNST 87 (128)
T ss_pred hHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH-CCCeEEEEeCCCCCc
Confidence 34455667777777788887665543222221111 22355554 334443 34555555543 479999999988765
Q ss_pred HHHHHHhcCCcEEEeCC
Q 009824 110 LVMKGINHGACDYLLKP 126 (524)
Q Consensus 110 ~~~~al~~GA~dYL~KP 126 (524)
... .|+..|.-|
T Consensus 88 la~-----~ad~~l~~~ 99 (128)
T cd05014 88 LAK-----LSDVVLDLP 99 (128)
T ss_pred hhh-----hCCEEEECC
Confidence 443 355556544
No 489
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=25.18 E-value=4.3e+02 Score=28.49 Aligned_cols=84 Identities=19% Similarity=0.067 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEE-eCCCCCCC----HHHHHHHHhcCCCCcEEEEecCCCHHH
Q 009824 38 ILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVIS-DVYMPDMD----GFKLLELVGLEMDLPVVMLSAYSDTKL 110 (524)
Q Consensus 38 ~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIl-Di~MPdmd----GleLLe~Lr~~~diPVIvlTa~~d~~~ 110 (524)
.++.+-+..+..++ -+.+.++|..+++. .+|.|++ ..--...+ .++.+..++...++|||+-.+......
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~---G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~D 303 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIEL---GADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSD 303 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHC---CcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHH
Confidence 34444444433333 45688888888763 3676654 22222223 367776665444699999999999999
Q ss_pred HHHHHhcCCcEEEe
Q 009824 111 VMKGINHGACDYLL 124 (524)
Q Consensus 111 ~~~al~~GA~dYL~ 124 (524)
+.+|+.+||+....
T Consensus 304 v~KALaLGA~aV~i 317 (361)
T cd04736 304 IVKALALGANAVLL 317 (361)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998765
No 490
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.15 E-value=4.4e+02 Score=28.20 Aligned_cols=86 Identities=12% Similarity=0.224 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009824 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~ 113 (524)
.....|.++-++.|..+....-...+.++|..- ++-..=+--.+.+-+.+++.+... ..|||+-|+..+.+.+.+
T Consensus 90 e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~----~~~ayKIaS~E~~~~plik~iA~~-~kPiIlSTGma~~~ei~~ 164 (347)
T COG2089 90 EWHAQLKEYARKRGIIFFSSPFDLTAVDLLESL----NPPAYKIASGEINDLPLIKYIAKK-GKPIILSTGMATIEEIEE 164 (347)
T ss_pred HHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhc----CCCeEEecCccccChHHHHHHHhc-CCCEEEEcccccHHHHHH
Confidence 344455666666677666555556666776543 233333444566788899988533 339999999998887776
Q ss_pred HH----hcCCcEEEe
Q 009824 114 GI----NHGACDYLL 124 (524)
Q Consensus 114 al----~~GA~dYL~ 124 (524)
++ +.|.-+++.
T Consensus 165 av~~~r~~g~~~i~L 179 (347)
T COG2089 165 AVAILRENGNPDIAL 179 (347)
T ss_pred HHHHHHhcCCCCeEE
Confidence 65 578876654
No 491
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=25.15 E-value=1.1e+02 Score=29.03 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHH-h--cCCCCcEEEEecCCC
Q 009824 37 KILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD----MDGFKLLELV-G--LEMDLPVVMLSAYSD 107 (524)
Q Consensus 37 ~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd----mdGleLLe~L-r--~~~diPVIvlTa~~d 107 (524)
..++. |+..|+.+. -+..+...++.+.... ||.|-+|..+.. .....+++.+ . ...++. |++++-.+
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~l~--~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLASLP--PDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIK-VIAEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHHHC--GSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-E-EEEECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhhcc--cccceeecccccccchhhHHHHHHHHHHHhhccccc-cceeecCC
Confidence 44444 667899876 3555555666666554 999999987642 2233344433 2 233454 44778888
Q ss_pred HHHHHHHHhcCCcEE
Q 009824 108 TKLVMKGINHGACDY 122 (524)
Q Consensus 108 ~~~~~~al~~GA~dY 122 (524)
.+....+.+.|++.+
T Consensus 214 ~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 214 EEQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHHHTTESEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 888989999998853
No 492
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=25.00 E-value=2.7e+02 Score=29.06 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHH----hcC--CCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELV----GLE--MDLPVVMLSAYSDTKLVMKGINHGACDY 122 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~L----r~~--~diPVIvlTa~~d~~~~~~al~~GA~dY 122 (524)
..+|++.++.....+|+|.+| .|.+ .+..++++.+ +.. +++ .|.+|+.-+.+.+.+..+.|++-|
T Consensus 198 v~eal~~~~~~~~~~d~I~lD-n~~~~~G~~~~~~~~~~~~l~~~g~~~~-~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLD-TPSSRRGVFRYLIREVRWALDIRGYKHV-KIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEEC-CCCCCCCCHHHHHHHHHHHHHhCCCCCe-EEEEeCCCCHHHHHHHHHcCCCEE
Confidence 557888876643458999999 4431 2344444433 222 333 577888889999999999996655
No 493
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=24.98 E-value=6e+02 Score=24.09 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=47.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy-~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~~diP 98 (524)
..+|..||-++.....++..+++.++ .+. ...+..+. .. ...+|+|+++. +.+.. ++++.+. ..+.-.
T Consensus 66 ~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~---~~--~~~fD~I~s~~-~~~~~--~~~~~~~~~LkpgG~ 137 (181)
T TIGR00138 66 ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF---QH--EEQFDVITSRA-LASLN--VLLELTLNLLKVGGY 137 (181)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc---cc--cCCccEEEehh-hhCHH--HHHHHHHHhcCCCCE
Confidence 46899999999999988888887665 344 33444442 11 23599999986 33322 2333332 234444
Q ss_pred EEEEecCCCHHHHHH
Q 009824 99 VVMLSAYSDTKLVMK 113 (524)
Q Consensus 99 VIvlTa~~d~~~~~~ 113 (524)
+++.-+......+..
T Consensus 138 lvi~~~~~~~~~~~~ 152 (181)
T TIGR00138 138 FLAYKGKKYLDEIEE 152 (181)
T ss_pred EEEEcCCCcHHHHHH
Confidence 555544443333333
No 494
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=24.98 E-value=7.2e+02 Score=25.03 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=66.5
Q ss_pred ccEEEEEeCCHHHHH--HHHHHHHhCCC--eEE--EECCHHHHHHHHHhcCCCceEEEEe---C----CCCCCCHHHHHH
Q 009824 23 GMRVLAVDDDQTCLK--ILEKFLRECQY--EVT--VTNRAITALKMLRENRNNFDLVISD---V----YMPDMDGFKLLE 89 (524)
Q Consensus 23 ~irVLIVDDdp~~~~--~L~~~L~~~gy--~V~--~a~sg~eALe~L~e~~~~pDLVIlD---i----~MPdmdGleLLe 89 (524)
+..|+.+|-...-|- .+.++++...| ... -+++.+|++.+.+. .+|+|=+- + .-|...-|++++
T Consensus 98 Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lvk 174 (229)
T COG3010 98 GADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLVK 174 (229)
T ss_pred CCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHHH
Confidence 345666664422211 34444443222 222 46778898887653 37876432 1 234556789998
Q ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 90 LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 90 ~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
.+.. .+++||.=--...++.+.++++.||+..++=-
T Consensus 175 ~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 175 QLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGS 210 (229)
T ss_pred HHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECc
Confidence 8754 78999999999999999999999999998754
No 495
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=24.97 E-value=5.8e+02 Score=26.92 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=37.8
Q ss_pred HHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEE------EeC-CCCHHHHHHHHHHHHH
Q 009824 87 LLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDY------LLK-PVRMEELKNTWQHVIR 141 (524)
Q Consensus 87 LLe~Lr~~~--diPVIvlTa~~d~~~~~~al~~GA~dY------L~K-P~~~eeL~~aI~~vlr 141 (524)
.+..++... ++|||.+.+-.+.+.+.+.+.+||+.. +.+ |.-..++..-+...++
T Consensus 278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445554433 799999999999999999999998864 333 5444455544444443
No 496
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=24.90 E-value=2.5e+02 Score=29.89 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=52.7
Q ss_pred ccEEEEEeCCHHHHH--HHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCCC-----CHHHHHHHHhc
Q 009824 23 GMRVLAVDDDQTCLK--ILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV--YMPDM-----DGFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIVDDdp~~~~--~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi--~MPdm-----dGleLLe~Lr~ 93 (524)
..+|.|+|..|...- .+...|.+.|..|+...+..-+.-+ .. .++|.||+.. .+.++ -|--.+..+..
T Consensus 180 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m-~~--~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak 256 (331)
T TIGR00512 180 LEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLM-KH--GEVDAVIVGADRIAANGDTANKIGTYQLAVLAK 256 (331)
T ss_pred ceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHh-cc--cCCCEEEEcccEEecCCCEeehhhHHHHHHHHH
Confidence 478988888886542 3466788889999977776555433 22 2489888744 44433 24444455545
Q ss_pred CCCCcEEEEecCC
Q 009824 94 EMDLPVVMLSAYS 106 (524)
Q Consensus 94 ~~diPVIvlTa~~ 106 (524)
..++|++++....
T Consensus 257 ~~~vPfyV~a~~~ 269 (331)
T TIGR00512 257 HHGVPFYVAAPTS 269 (331)
T ss_pred HhCCCEEEecccc
Confidence 6789999886643
No 497
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.88 E-value=4.2e+02 Score=26.71 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=54.3
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 53 TNRAITALKMLRENRNNFDLVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 53 a~sg~eALe~L~e~~~~pDLVIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
..+..+..+.+.... --.++++|+.--++ .-+++++.+.....+||++=.+....+.+.+.+..|++.++.-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 346777777766532 23599999976642 3478888886667899998888889999999999999988764
No 498
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=24.82 E-value=1.4e+02 Score=31.10 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=37.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-----EECCHHHHHHHHHhcCCCceEEEE
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVT-----VTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-----~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|...=|||=+|.|+..++..-..-++.+..+. .-.-.+...++|.+.+ ||++++
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 159 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVI 159 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEE
Confidence 43335899999999999888888888776655 2223455556666654 887665
No 499
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.60 E-value=6.5e+02 Score=24.85 Aligned_cols=93 Identities=15% Similarity=-0.005 Sum_probs=53.4
Q ss_pred HHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-CCCc--EEEEecCCCHHHHHHHHh
Q 009824 41 KFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLP--VVMLSAYSDTKLVMKGIN 116 (524)
Q Consensus 41 ~~L~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~diP--VIvlTa~~d~~~~~~al~ 116 (524)
..|...+. -|....+.++++...+.-. .-.+=++.+.|-.-+.++.++.++.. ++-| +|=.-.-.+.+.+.++++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 33444333 3345556666666554321 12344666666666788888877533 2222 233344567888999999
Q ss_pred cCCcEEEeCCCCHHHHHHH
Q 009824 117 HGACDYLLKPVRMEELKNT 135 (524)
Q Consensus 117 ~GA~dYL~KP~~~eeL~~a 135 (524)
+||...+. |.-..++...
T Consensus 87 aGA~Fivs-P~~~~~v~~~ 104 (213)
T PRK06552 87 AGAQFIVS-PSFNRETAKI 104 (213)
T ss_pred cCCCEEEC-CCCCHHHHHH
Confidence 99976665 5444444443
No 500
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.59 E-value=6.2e+02 Score=26.14 Aligned_cols=64 Identities=11% Similarity=-0.027 Sum_probs=43.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV-GL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L-r~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.+.+++.+++.. .+|+|.+|-. +.+.++.+ +. .+++|++ .++.-+.+.+.+..+.||+.+-+
T Consensus 195 Ev~tleea~eA~~~---gaD~I~LD~~-----~~e~l~~~v~~~~~~i~le-AsGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 195 EVESLDELRQALAA---GADIVMLDEL-----SLDDMREAVRLTAGRAKLE-ASGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred EeCCHHHHHHHHHc---CCCEEEECCC-----CHHHHHHHHHHhCCCCcEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 67889999888853 3899999843 33444332 21 2467655 45556788888889999988754
Done!