Query 009824
Match_columns 524
No_of_seqs 356 out of 2108
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.1E-25 3.8E-30 203.7 16.8 121 20-142 9-133 (134)
2 3gl9_A Response regulator; bet 99.9 1.6E-21 5.6E-26 168.9 17.3 116 24-141 3-121 (122)
3 3f6p_A Transcriptional regulat 99.9 1.5E-21 5.2E-26 168.3 17.0 117 24-142 3-119 (120)
4 2lpm_A Two-component response 99.9 5.2E-24 1.8E-28 190.2 0.5 113 22-140 7-120 (123)
5 3t6k_A Response regulator rece 99.9 4E-21 1.4E-25 169.6 17.9 120 23-144 4-126 (136)
6 1a04_A Nitrate/nitrite respons 99.9 3.4E-21 1.2E-25 182.6 17.1 121 22-144 4-127 (215)
7 2r25_B Osmosensing histidine p 99.9 8.2E-21 2.8E-25 166.9 17.0 120 23-142 2-127 (133)
8 1yio_A Response regulatory pro 99.9 2.5E-21 8.7E-26 182.2 13.4 119 23-143 4-123 (208)
9 3h1g_A Chemotaxis protein CHEY 99.8 2.2E-20 7.7E-25 162.7 16.9 119 23-142 5-127 (129)
10 3m6m_D Sensory/regulatory prot 99.8 3.4E-20 1.2E-24 165.2 17.1 119 22-142 13-136 (143)
11 2pl1_A Transcriptional regulat 99.8 9.4E-20 3.2E-24 155.5 18.4 118 24-143 1-119 (121)
12 3gt7_A Sensor protein; structu 99.8 6.9E-20 2.4E-24 164.9 18.0 120 23-144 7-129 (154)
13 2a9o_A Response regulator; ess 99.8 6.9E-20 2.3E-24 155.8 17.0 117 24-142 2-118 (120)
14 1zgz_A Torcad operon transcrip 99.8 1.1E-19 3.7E-24 155.7 18.3 117 24-142 3-119 (122)
15 3crn_A Response regulator rece 99.8 9E-20 3.1E-24 159.5 17.7 119 23-143 3-122 (132)
16 1dbw_A Transcriptional regulat 99.8 1.2E-19 4E-24 156.9 18.2 119 23-143 3-122 (126)
17 3q9s_A DNA-binding response re 99.8 2.1E-20 7.3E-25 183.2 14.9 120 23-144 37-156 (249)
18 3rqi_A Response regulator prot 99.8 1.3E-20 4.4E-25 175.4 12.6 119 23-143 7-126 (184)
19 2qzj_A Two-component response 99.8 8E-20 2.7E-24 161.2 16.9 119 23-143 4-122 (136)
20 3lua_A Response regulator rece 99.8 2.5E-20 8.6E-25 164.0 12.7 122 22-145 3-130 (140)
21 1xhf_A DYE resistance, aerobic 99.8 1.5E-19 5.3E-24 154.9 17.2 118 24-143 4-121 (123)
22 1zh2_A KDP operon transcriptio 99.8 1.1E-19 3.8E-24 154.8 16.2 118 24-143 2-119 (121)
23 1srr_A SPO0F, sporulation resp 99.8 1E-19 3.5E-24 156.6 16.0 117 24-142 4-121 (124)
24 3c3w_A Two component transcrip 99.8 8.3E-21 2.8E-25 182.5 9.9 120 24-145 2-124 (225)
25 3jte_A Response regulator rece 99.8 2.3E-19 7.7E-24 158.2 18.1 122 23-144 3-125 (143)
26 3hv2_A Response regulator/HD d 99.8 1.9E-19 6.5E-24 161.3 17.9 122 20-143 11-134 (153)
27 1jbe_A Chemotaxis protein CHEY 99.8 2.3E-19 7.9E-24 154.9 17.6 119 22-142 3-125 (128)
28 3klo_A Transcriptional regulat 99.8 3.1E-21 1.1E-25 184.9 6.4 122 22-145 6-132 (225)
29 1tmy_A CHEY protein, TMY; chem 99.8 1.6E-19 5.3E-24 154.2 16.3 115 24-140 3-119 (120)
30 3heb_A Response regulator rece 99.8 2.8E-19 9.6E-24 159.7 18.6 124 22-145 3-138 (152)
31 3grc_A Sensor protein, kinase; 99.8 7E-20 2.4E-24 160.9 14.4 122 22-145 5-130 (140)
32 3kto_A Response regulator rece 99.8 4E-20 1.4E-24 162.6 12.8 122 22-145 5-129 (136)
33 3hdv_A Response regulator; PSI 99.8 2.7E-19 9.1E-24 156.4 17.9 123 21-144 5-129 (136)
34 1p6q_A CHEY2; chemotaxis, sign 99.8 9.8E-20 3.4E-24 157.4 14.9 119 22-142 5-127 (129)
35 1mb3_A Cell division response 99.8 1.2E-19 4.1E-24 155.5 15.3 117 24-142 2-121 (124)
36 3f6c_A Positive transcription 99.8 6.9E-20 2.4E-24 159.4 13.7 123 23-147 1-125 (134)
37 3r0j_A Possible two component 99.8 2.1E-19 7.3E-24 175.1 18.5 121 22-144 22-143 (250)
38 1i3c_A Response regulator RCP1 99.8 2.4E-19 8.1E-24 160.3 17.3 122 22-143 7-138 (149)
39 3b2n_A Uncharacterized protein 99.8 2.3E-19 7.9E-24 157.1 16.5 120 23-144 3-125 (133)
40 3h5i_A Response regulator/sens 99.8 5.1E-20 1.7E-24 162.6 12.2 121 23-144 5-126 (140)
41 3eod_A Protein HNR; response r 99.8 1.5E-19 5.2E-24 156.7 15.0 120 22-143 6-127 (130)
42 3mm4_A Histidine kinase homolo 99.8 1.4E-19 4.8E-24 172.3 16.1 122 21-144 59-198 (206)
43 1dz3_A Stage 0 sporulation pro 99.8 2E-19 6.8E-24 156.3 15.7 118 24-143 3-124 (130)
44 3ilh_A Two component response 99.8 3.4E-19 1.2E-23 156.6 17.1 124 21-144 7-141 (146)
45 3nhm_A Response regulator; pro 99.8 2E-19 6.7E-24 156.3 15.3 120 22-145 3-125 (133)
46 3kht_A Response regulator; PSI 99.8 2.6E-19 9.1E-24 158.2 16.3 120 23-144 5-130 (144)
47 3hdg_A Uncharacterized protein 99.8 2.1E-19 7.3E-24 157.2 15.4 121 22-144 6-127 (137)
48 3i42_A Response regulator rece 99.8 9.9E-20 3.4E-24 157.3 12.9 118 23-143 3-123 (127)
49 3cnb_A DNA-binding response re 99.8 6.8E-19 2.3E-23 154.2 18.3 121 22-144 7-132 (143)
50 4e7p_A Response regulator; DNA 99.8 3.6E-19 1.2E-23 159.0 16.8 123 20-144 17-142 (150)
51 3n0r_A Response regulator; sig 99.8 2.8E-20 9.7E-25 187.5 10.5 118 23-144 160-279 (286)
52 1k68_A Phytochrome response re 99.8 5.2E-19 1.8E-23 153.7 17.0 122 23-144 2-133 (140)
53 3hzh_A Chemotaxis response reg 99.8 3.1E-19 1.1E-23 161.1 15.8 119 23-141 36-156 (157)
54 3cfy_A Putative LUXO repressor 99.8 3.3E-19 1.1E-23 157.4 15.6 118 24-143 5-123 (137)
55 2zay_A Response regulator rece 99.8 4.3E-19 1.5E-23 157.1 15.9 121 22-144 7-130 (147)
56 1mvo_A PHOP response regulator 99.8 5.5E-19 1.9E-23 154.1 16.2 118 24-143 4-122 (136)
57 2jba_A Phosphate regulon trans 99.8 9.5E-20 3.3E-24 156.8 11.1 118 24-143 3-123 (127)
58 3c3m_A Response regulator rece 99.8 6.2E-19 2.1E-23 155.3 16.0 119 23-143 3-124 (138)
59 4dad_A Putative pilus assembly 99.8 2.2E-19 7.5E-24 159.1 13.1 122 22-143 19-142 (146)
60 1k66_A Phytochrome response re 99.8 8.1E-19 2.8E-23 154.4 16.6 122 23-144 6-140 (149)
61 3snk_A Response regulator CHEY 99.8 3.3E-20 1.1E-24 162.6 7.5 120 21-142 12-133 (135)
62 3luf_A Two-component system re 99.8 4.7E-19 1.6E-23 175.2 16.4 122 22-144 123-247 (259)
63 3cg0_A Response regulator rece 99.8 9.7E-19 3.3E-23 152.9 16.5 121 22-144 8-130 (140)
64 3eul_A Possible nitrate/nitrit 99.8 1.4E-18 4.7E-23 155.2 17.5 125 20-146 12-139 (152)
65 1s8n_A Putative antiterminator 99.8 6.6E-19 2.2E-23 165.8 15.9 119 23-143 13-132 (205)
66 3lte_A Response regulator; str 99.8 1.3E-18 4.5E-23 150.9 16.5 119 22-143 5-126 (132)
67 2qxy_A Response regulator; reg 99.8 7.1E-19 2.4E-23 154.8 15.0 120 22-144 3-123 (142)
68 3n53_A Response regulator rece 99.8 2.7E-19 9.2E-24 157.4 11.7 120 23-145 3-125 (140)
69 3kcn_A Adenylate cyclase homol 99.8 1.4E-18 4.7E-23 155.4 16.2 121 22-144 3-125 (151)
70 3cg4_A Response regulator rece 99.8 4.1E-19 1.4E-23 156.0 12.1 121 22-144 6-129 (142)
71 2qr3_A Two-component system re 99.8 2E-18 6.8E-23 151.0 16.4 120 23-144 3-128 (140)
72 3dzd_A Transcriptional regulat 99.8 5.1E-19 1.7E-23 184.6 14.7 119 24-144 1-120 (368)
73 1kgs_A DRRD, DNA binding respo 99.8 1.6E-18 5.5E-23 164.7 16.9 120 23-144 2-122 (225)
74 3a10_A Response regulator; pho 99.8 8.8E-19 3E-23 148.7 13.3 113 24-140 2-115 (116)
75 1dcf_A ETR1 protein; beta-alph 99.8 1.6E-18 5.6E-23 151.6 14.8 119 22-143 6-130 (136)
76 2rjn_A Response regulator rece 99.8 2.9E-18 9.8E-23 153.5 16.6 120 22-143 6-127 (154)
77 2ayx_A Sensor kinase protein R 99.8 1.2E-18 4.2E-23 171.4 15.0 120 22-143 128-248 (254)
78 3cu5_A Two component transcrip 99.8 9.6E-19 3.3E-23 155.2 11.9 118 24-143 3-124 (141)
79 1qkk_A DCTD, C4-dicarboxylate 99.8 2.8E-18 9.7E-23 153.7 15.0 120 23-144 3-123 (155)
80 2qvg_A Two component response 99.8 5E-18 1.7E-22 149.2 16.3 121 22-142 6-135 (143)
81 3cz5_A Two-component response 99.8 3.8E-18 1.3E-22 152.5 15.7 120 23-144 5-127 (153)
82 2jk1_A HUPR, hydrogenase trans 99.8 6.4E-18 2.2E-22 148.7 16.5 117 24-143 2-120 (139)
83 2gkg_A Response regulator homo 99.8 3.7E-18 1.3E-22 145.9 14.4 116 24-142 6-125 (127)
84 2oqr_A Sensory transduction pr 99.8 2.1E-18 7.2E-23 164.7 13.9 118 24-143 5-122 (230)
85 3eq2_A Probable two-component 99.8 1.4E-18 4.8E-23 180.9 13.6 119 23-143 5-125 (394)
86 1ys7_A Transcriptional regulat 99.8 2.6E-18 8.8E-23 164.1 14.0 120 23-144 7-127 (233)
87 2gwr_A DNA-binding response re 99.8 2.5E-18 8.7E-23 166.0 13.7 118 24-143 6-123 (238)
88 1ny5_A Transcriptional regulat 99.8 5.1E-18 1.7E-22 178.0 16.7 118 24-143 1-119 (387)
89 1w25_A Stalked-cell differenti 99.8 6E-18 2E-22 178.9 17.3 118 24-143 2-122 (459)
90 2qsj_A DNA-binding response re 99.8 4.7E-18 1.6E-22 151.8 13.1 122 23-146 3-128 (154)
91 3c97_A Signal transduction his 99.8 5.4E-18 1.8E-22 149.3 12.2 117 24-145 11-133 (140)
92 3kyj_B CHEY6 protein, putative 99.8 3.2E-18 1.1E-22 151.6 10.8 117 19-136 9-129 (145)
93 2rdm_A Response regulator rece 99.7 2.6E-17 8.7E-22 142.4 16.1 119 23-144 5-125 (132)
94 2pln_A HP1043, response regula 99.7 2.3E-17 7.9E-22 144.5 15.8 117 21-143 16-134 (137)
95 2qv0_A Protein MRKE; structura 99.7 3.4E-17 1.2E-21 144.1 16.7 118 23-144 9-129 (143)
96 3t8y_A CHEB, chemotaxis respon 99.7 2.2E-17 7.5E-22 150.5 15.1 119 22-142 24-155 (164)
97 2j48_A Two-component sensor ki 99.7 9.6E-18 3.3E-22 140.7 11.6 112 24-140 2-116 (119)
98 3eqz_A Response regulator; str 99.7 4.4E-18 1.5E-22 147.6 9.7 119 23-144 3-127 (135)
99 3bre_A Probable two-component 99.7 1.2E-17 4.3E-22 170.2 14.1 117 23-141 18-138 (358)
100 1p2f_A Response regulator; DRR 99.7 2E-17 6.7E-22 157.1 14.1 116 24-144 3-119 (220)
101 1qo0_D AMIR; binding protein, 99.7 1.1E-17 3.7E-22 156.4 10.4 114 23-143 12-126 (196)
102 2hqr_A Putative transcriptiona 99.7 5.2E-17 1.8E-21 154.5 13.2 114 24-143 1-116 (223)
103 3sy8_A ROCR; TIM barrel phosph 99.7 3.4E-17 1.2E-21 171.5 13.0 121 23-144 3-130 (400)
104 2b4a_A BH3024; flavodoxin-like 99.7 2.7E-17 9.2E-22 144.2 9.6 117 20-142 12-131 (138)
105 1dc7_A NTRC, nitrogen regulati 99.7 6.3E-19 2.1E-23 150.4 -1.3 118 24-143 4-122 (124)
106 1a2o_A CHEB methylesterase; ba 99.7 1.1E-15 3.9E-20 158.3 16.0 118 23-142 3-133 (349)
107 3luf_A Two-component system re 99.6 3E-16 1E-20 155.1 9.4 103 23-129 4-107 (259)
108 2vyc_A Biodegradative arginine 99.6 1.6E-15 5.3E-20 171.9 9.9 119 24-143 1-134 (755)
109 1irz_A ARR10-B; helix-turn-hel 99.2 1.3E-11 4.5E-16 97.4 5.8 54 188-241 2-55 (64)
110 3cwo_X Beta/alpha-barrel prote 99.0 3.7E-10 1.3E-14 107.2 6.4 92 49-142 7-101 (237)
111 1w25_A Stalked-cell differenti 99.0 8.1E-09 2.8E-13 108.8 17.1 117 23-143 152-271 (459)
112 2ayx_A Sensor kinase protein R 97.3 0.0003 1E-08 68.4 7.1 97 21-141 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 97.1 0.00053 1.8E-08 77.3 6.7 105 35-143 18-124 (715)
114 3tm8_A BD1817, uncharacterized 96.7 0.00039 1.3E-08 71.1 1.2 56 216-283 209-265 (328)
115 3cwo_X Beta/alpha-barrel prote 96.0 0.043 1.5E-06 51.1 11.0 82 55-137 131-221 (237)
116 3q7r_A Transcriptional regulat 95.9 0.038 1.3E-06 47.2 9.1 102 24-142 13-118 (121)
117 2yxb_A Coenzyme B12-dependent 95.1 0.37 1.3E-05 44.0 13.6 117 23-142 18-145 (161)
118 3q58_A N-acetylmannosamine-6-p 93.3 0.49 1.7E-05 45.8 10.8 98 24-125 102-210 (229)
119 1wv2_A Thiazole moeity, thiazo 92.5 1.7 5.8E-05 43.1 13.4 99 39-141 127-237 (265)
120 3igs_A N-acetylmannosamine-6-p 92.0 0.87 3E-05 44.0 10.6 97 24-124 102-209 (232)
121 2i2x_B MTAC, methyltransferase 90.1 4.7 0.00016 39.3 13.9 110 23-140 123-242 (258)
122 1ccw_A Protein (glutamate muta 89.3 7.6 0.00026 34.1 13.4 107 30-139 14-133 (137)
123 1y80_A Predicted cobalamin bin 88.0 2.2 7.5E-05 40.0 9.5 98 23-125 88-197 (210)
124 3fkq_A NTRC-like two-domain pr 87.1 5.8 0.0002 40.4 12.8 104 22-140 20-126 (373)
125 3ezx_A MMCP 1, monomethylamine 85.5 1.9 6.4E-05 41.2 7.5 98 23-125 92-203 (215)
126 2htm_A Thiazole biosynthesis p 84.9 4.7 0.00016 40.0 10.2 103 34-141 112-228 (268)
127 1r8j_A KAIA; circadian clock p 84.8 9.2 0.00031 37.9 12.0 120 20-142 6-129 (289)
128 3qja_A IGPS, indole-3-glycerol 84.7 12 0.00039 37.0 13.1 90 33-125 148-242 (272)
129 4fo4_A Inosine 5'-monophosphat 81.4 13 0.00044 38.3 12.4 98 23-124 120-239 (366)
130 1yad_A Regulatory protein TENI 80.6 6.9 0.00023 36.6 9.3 74 47-124 110-191 (221)
131 2gjl_A Hypothetical protein PA 80.4 23 0.00079 35.2 13.7 81 41-124 112-200 (328)
132 1xi3_A Thiamine phosphate pyro 80.1 13 0.00043 34.2 10.8 69 52-124 114-189 (215)
133 3ffs_A Inosine-5-monophosphate 79.7 12 0.0004 39.2 11.5 99 23-124 156-274 (400)
134 3f4w_A Putative hexulose 6 pho 79.6 23 0.0008 32.5 12.6 110 25-140 79-207 (211)
135 1xrs_B D-lysine 5,6-aminomutas 79.4 15 0.00052 36.2 11.6 114 23-141 120-257 (262)
136 3o63_A Probable thiamine-phosp 78.8 12 0.00042 36.2 10.6 84 52-139 141-238 (243)
137 3kp1_A D-ornithine aminomutase 78.2 8 0.00028 42.9 9.8 115 23-142 602-735 (763)
138 1xm3_A Thiazole biosynthesis p 77.5 3.7 0.00013 40.2 6.5 76 47-125 126-207 (264)
139 1geq_A Tryptophan synthase alp 76.7 6.7 0.00023 37.3 8.0 53 85-137 69-127 (248)
140 2bfw_A GLGA glycogen synthase; 75.9 23 0.00079 31.3 11.0 106 23-141 70-179 (200)
141 3khj_A Inosine-5-monophosphate 74.9 15 0.00053 37.6 10.6 97 24-124 118-235 (361)
142 2q5c_A NTRC family transcripti 74.0 31 0.0011 32.0 11.7 56 21-76 2-58 (196)
143 2l69_A Rossmann 2X3 fold prote 73.9 27 0.00093 29.3 9.8 48 24-71 3-50 (134)
144 3bo9_A Putative nitroalkan dio 73.4 26 0.00088 35.1 11.7 81 41-124 118-204 (326)
145 3usb_A Inosine-5'-monophosphat 72.3 31 0.001 37.0 12.6 99 23-124 268-387 (511)
146 1req_A Methylmalonyl-COA mutas 71.3 16 0.00055 41.1 10.3 116 24-142 597-723 (727)
147 2xij_A Methylmalonyl-COA mutas 71.0 22 0.00075 40.2 11.4 116 24-142 605-731 (762)
148 3bw2_A 2-nitropropane dioxygen 69.0 35 0.0012 34.6 11.7 77 45-124 143-236 (369)
149 1y0e_A Putative N-acetylmannos 67.6 25 0.00087 32.5 9.6 86 36-124 107-203 (223)
150 1qop_A Tryptophan synthase alp 67.4 13 0.00043 36.3 7.6 72 69-140 44-144 (268)
151 2ekc_A AQ_1548, tryptophan syn 67.4 16 0.00054 35.6 8.3 56 85-140 82-144 (262)
152 1geq_A Tryptophan synthase alp 67.3 29 0.00098 32.8 10.0 84 38-125 124-220 (248)
153 2z6i_A Trans-2-enoyl-ACP reduc 67.1 32 0.0011 34.4 10.7 79 43-124 106-190 (332)
154 2w6r_A Imidazole glycerol phos 67.1 25 0.00085 33.5 9.6 68 56-125 158-229 (266)
155 2gek_A Phosphatidylinositol ma 66.4 22 0.00074 35.1 9.3 107 23-141 240-348 (406)
156 2c6q_A GMP reductase 2; TIM ba 66.3 46 0.0016 33.8 11.9 101 23-127 132-255 (351)
157 1ka9_F Imidazole glycerol phos 65.9 41 0.0014 31.7 10.8 78 57-136 155-242 (252)
158 3rht_A (gatase1)-like protein; 65.8 1.7 5.7E-05 42.9 0.9 77 23-105 4-88 (259)
159 2f9f_A First mannosyl transfer 65.4 34 0.0012 30.0 9.6 107 23-142 50-162 (177)
160 1eep_A Inosine 5'-monophosphat 65.4 33 0.0011 35.3 10.8 88 34-124 180-284 (404)
161 3r2g_A Inosine 5'-monophosphat 64.9 1.1E+02 0.0037 31.4 14.3 97 23-124 112-227 (361)
162 1thf_D HISF protein; thermophI 64.9 53 0.0018 30.9 11.4 78 56-135 153-240 (253)
163 2v82_A 2-dehydro-3-deoxy-6-pho 64.5 14 0.00047 34.2 7.0 78 41-125 95-176 (212)
164 4avf_A Inosine-5'-monophosphat 64.3 51 0.0018 35.0 12.2 98 23-124 241-360 (490)
165 3tsm_A IGPS, indole-3-glycerol 64.2 39 0.0013 33.3 10.5 85 36-124 158-248 (272)
166 1jcn_A Inosine monophosphate d 63.6 53 0.0018 34.9 12.2 88 34-124 282-386 (514)
167 4adt_A Pyridoxine biosynthetic 63.5 47 0.0016 33.1 11.1 58 85-142 196-260 (297)
168 4dzz_A Plasmid partitioning pr 62.8 12 0.00042 33.5 6.2 52 23-77 30-83 (206)
169 2tps_A Protein (thiamin phosph 62.4 25 0.00085 32.6 8.4 69 52-124 122-199 (227)
170 1vzw_A Phosphoribosyl isomeras 60.9 49 0.0017 31.0 10.3 79 55-135 147-238 (244)
171 3beo_A UDP-N-acetylglucosamine 60.7 74 0.0025 30.8 11.9 59 70-141 283-341 (375)
172 2lci_A Protein OR36; structura 60.5 23 0.0008 29.7 6.7 33 32-64 86-118 (134)
173 3fwz_A Inner membrane protein 60.2 37 0.0013 29.0 8.5 92 23-124 30-124 (140)
174 3c3y_A Pfomt, O-methyltransfer 59.0 37 0.0013 31.8 9.0 59 20-78 92-156 (237)
175 3ulq_B Transcriptional regulat 58.6 5.1 0.00017 32.7 2.4 48 221-269 37-85 (90)
176 1h5y_A HISF; histidine biosynt 58.6 49 0.0017 30.7 9.8 79 56-136 156-244 (253)
177 3vnd_A TSA, tryptophan synthas 58.4 19 0.00064 35.5 6.9 55 85-139 83-144 (267)
178 3fro_A GLGA glycogen synthase; 58.4 61 0.0021 31.9 11.0 106 23-141 285-394 (439)
179 3c48_A Predicted glycosyltrans 58.2 44 0.0015 33.4 10.0 108 23-141 276-390 (438)
180 1vgv_A UDP-N-acetylglucosamine 58.0 59 0.002 31.7 10.7 42 95-141 300-341 (384)
181 2w6r_A Imidazole glycerol phos 57.5 37 0.0013 32.3 8.8 69 55-125 31-103 (266)
182 1yxy_A Putative N-acetylmannos 57.5 44 0.0015 31.2 9.3 84 36-124 121-214 (234)
183 1sui_A Caffeoyl-COA O-methyltr 57.5 96 0.0033 29.2 11.8 70 20-91 101-176 (247)
184 2iw1_A Lipopolysaccharide core 57.4 51 0.0018 31.8 10.1 106 23-141 228-336 (374)
185 1v4v_A UDP-N-acetylglucosamine 57.2 73 0.0025 31.1 11.3 100 24-141 231-333 (376)
186 3bul_A Methionine synthase; tr 57.0 34 0.0012 37.4 9.4 101 23-125 98-211 (579)
187 3duw_A OMT, O-methyltransferas 56.8 45 0.0015 30.3 9.0 71 19-91 79-153 (223)
188 3okp_A GDP-mannose-dependent a 56.4 23 0.00079 34.6 7.4 106 24-141 230-343 (394)
189 2qzs_A Glycogen synthase; glyc 56.1 61 0.0021 33.0 10.8 108 23-141 321-440 (485)
190 1rzu_A Glycogen synthase 1; gl 55.3 82 0.0028 32.0 11.6 108 23-141 320-439 (485)
191 4e5v_A Putative THUA-like prot 55.2 13 0.00045 36.7 5.3 77 22-103 3-93 (281)
192 2xci_A KDO-transferase, 3-deox 54.6 32 0.0011 34.6 8.2 111 23-142 225-346 (374)
193 3dr5_A Putative O-methyltransf 54.5 18 0.00062 33.8 5.9 59 20-80 78-140 (221)
194 4fxs_A Inosine-5'-monophosphat 54.4 93 0.0032 33.0 12.1 98 23-124 243-362 (496)
195 1rd5_A Tryptophan synthase alp 54.2 28 0.00097 33.4 7.4 41 84-124 189-229 (262)
196 2d00_A V-type ATP synthase sub 54.0 68 0.0023 27.1 8.9 76 23-104 3-80 (109)
197 1ka9_F Imidazole glycerol phos 54.0 65 0.0022 30.2 9.9 68 55-124 32-103 (252)
198 2v5j_A 2,4-dihydroxyhept-2-ENE 53.9 1.3E+02 0.0044 29.6 12.3 97 39-138 30-132 (287)
199 3tr6_A O-methyltransferase; ce 53.3 49 0.0017 30.0 8.7 60 19-78 85-149 (225)
200 1qo2_A Molecule: N-((5-phospho 53.0 57 0.0019 30.6 9.3 78 55-135 145-239 (241)
201 2vws_A YFAU, 2-keto-3-deoxy su 53.0 1.5E+02 0.005 28.7 12.4 97 39-138 9-111 (267)
202 2avd_A Catechol-O-methyltransf 52.9 47 0.0016 30.2 8.5 59 20-78 91-154 (229)
203 1ep3_A Dihydroorotate dehydrog 52.8 78 0.0027 30.7 10.5 57 85-141 230-292 (311)
204 1h5y_A HISF; histidine biosynt 52.5 58 0.002 30.1 9.2 69 54-124 33-105 (253)
205 1je8_A Nitrate/nitrite respons 52.2 13 0.00044 29.4 3.8 51 221-272 29-80 (82)
206 3kts_A Glycerol uptake operon 52.1 18 0.00062 34.0 5.4 62 57-124 117-178 (192)
207 2y88_A Phosphoribosyl isomeras 52.1 56 0.0019 30.5 9.0 77 56-134 151-240 (244)
208 3cbg_A O-methyltransferase; cy 51.9 52 0.0018 30.6 8.7 60 19-78 93-157 (232)
209 3l4e_A Uncharacterized peptida 51.8 57 0.002 30.5 8.9 62 23-92 27-98 (206)
210 1qop_A Tryptophan synthase alp 51.2 61 0.0021 31.3 9.3 41 85-125 194-234 (268)
211 3ovp_A Ribulose-phosphate 3-ep 51.2 41 0.0014 32.0 7.9 55 69-124 134-196 (228)
212 3ceu_A Thiamine phosphate pyro 51.0 22 0.00075 33.1 5.9 68 52-124 94-171 (210)
213 1vrd_A Inosine-5'-monophosphat 50.7 1.1E+02 0.0037 32.1 11.9 88 34-124 264-368 (494)
214 4gmf_A Yersiniabactin biosynth 50.6 22 0.00074 36.5 6.2 104 22-142 6-118 (372)
215 3qz6_A HPCH/HPAI aldolase; str 50.2 1.1E+02 0.0036 29.7 10.8 83 55-139 25-110 (261)
216 3hc1_A Uncharacterized HDOD do 50.2 4.4 0.00015 40.3 0.8 50 225-283 176-225 (305)
217 3o07_A Pyridoxine biosynthesis 49.8 62 0.0021 32.3 9.0 60 84-143 186-252 (291)
218 3nav_A Tryptophan synthase alp 49.6 18 0.00062 35.7 5.2 55 85-139 85-146 (271)
219 2oo3_A Protein involved in cat 49.6 11 0.00038 37.6 3.7 54 24-77 114-167 (283)
220 1z0s_A Probable inorganic poly 49.4 12 0.0004 37.2 3.8 92 24-141 30-122 (278)
221 3u81_A Catechol O-methyltransf 49.1 35 0.0012 31.3 6.9 61 20-80 80-145 (221)
222 3qhp_A Type 1 capsular polysac 48.5 56 0.0019 27.7 7.8 107 22-141 31-139 (166)
223 3tdn_A FLR symmetric alpha-bet 47.6 64 0.0022 30.4 8.7 68 55-124 36-107 (247)
224 2fli_A Ribulose-phosphate 3-ep 47.5 24 0.00082 32.5 5.5 55 69-124 131-197 (220)
225 1ypf_A GMP reductase; GUAC, pu 47.4 2.2E+02 0.0077 28.2 14.2 90 31-124 132-238 (336)
226 3tfw_A Putative O-methyltransf 46.7 1.1E+02 0.0038 28.6 10.2 71 18-91 83-156 (248)
227 1rd5_A Tryptophan synthase alp 46.2 29 0.001 33.3 6.1 55 84-139 82-139 (262)
228 1thf_D HISF protein; thermophI 46.0 1.1E+02 0.0037 28.6 10.1 69 55-125 31-103 (253)
229 3paj_A Nicotinate-nucleotide p 45.9 78 0.0027 32.0 9.3 93 25-124 204-302 (320)
230 2l2q_A PTS system, cellobiose- 45.2 35 0.0012 28.5 5.7 78 21-104 2-84 (109)
231 1qdl_B Protein (anthranilate s 45.2 13 0.00044 34.2 3.2 50 24-75 1-51 (195)
232 3ot5_A UDP-N-acetylglucosamine 44.4 1.4E+02 0.0047 30.4 11.2 42 95-141 319-360 (403)
233 2r60_A Glycosyl transferase, g 44.2 75 0.0026 32.6 9.3 107 24-141 295-423 (499)
234 1h1y_A D-ribulose-5-phosphate 44.1 47 0.0016 31.1 7.1 81 43-124 109-200 (228)
235 3s83_A Ggdef family protein; s 43.9 59 0.002 30.6 7.8 97 39-138 144-254 (259)
236 3c57_A Two component transcrip 43.9 15 0.00051 29.9 3.0 52 220-272 34-86 (95)
237 2x6q_A Trehalose-synthase TRET 43.6 1.6E+02 0.0053 29.1 11.3 106 23-141 262-378 (416)
238 3euw_A MYO-inositol dehydrogen 43.5 1.1E+02 0.0039 30.0 10.2 105 23-140 4-113 (344)
239 1jvn_A Glutamine, bifunctional 43.4 1.1E+02 0.0038 32.9 10.7 79 56-136 454-543 (555)
240 3iwp_A Copper homeostasis prot 42.5 1.2E+02 0.0042 30.1 10.0 91 47-138 39-150 (287)
241 3ic5_A Putative saccharopine d 41.9 82 0.0028 25.0 7.4 90 23-122 5-97 (118)
242 1dxe_A 2-dehydro-3-deoxy-galac 41.6 2.1E+02 0.0071 27.3 11.4 98 39-138 10-112 (256)
243 1p0k_A Isopentenyl-diphosphate 41.2 2.4E+02 0.0082 28.0 12.2 88 35-125 166-280 (349)
244 3iwt_A 178AA long hypothetical 41.0 67 0.0023 28.9 7.3 60 18-77 10-89 (178)
245 1wa3_A 2-keto-3-deoxy-6-phosph 40.8 48 0.0016 30.2 6.4 64 55-124 113-177 (205)
246 1ujp_A Tryptophan synthase alp 40.7 1E+02 0.0035 30.1 9.1 39 85-125 191-229 (271)
247 2rnj_A Response regulator prot 40.5 19 0.00066 28.7 3.2 52 221-273 37-89 (91)
248 3l0g_A Nicotinate-nucleotide p 40.4 66 0.0023 32.3 7.7 91 26-123 181-277 (300)
249 3ajx_A 3-hexulose-6-phosphate 40.4 26 0.00089 32.0 4.5 81 55-139 11-99 (207)
250 1tqj_A Ribulose-phosphate 3-ep 40.3 45 0.0015 31.6 6.3 83 55-140 18-109 (230)
251 2ho3_A Oxidoreductase, GFO/IDH 40.2 2.3E+02 0.008 27.4 11.8 105 24-141 2-111 (325)
252 3tqv_A Nicotinate-nucleotide p 39.8 90 0.0031 31.1 8.5 92 26-124 172-269 (287)
253 3ajd_A Putative methyltransfer 39.8 1.2E+02 0.004 29.0 9.3 56 22-77 107-164 (274)
254 2qfm_A Spermine synthase; sper 39.6 42 0.0014 34.6 6.3 56 24-79 212-277 (364)
255 2jpc_A SSRB; DNA binding prote 39.5 14 0.00047 26.9 2.0 43 228-270 12-55 (61)
256 3oy2_A Glycosyltransferase B73 39.5 98 0.0034 30.5 9.0 106 24-141 216-354 (413)
257 1ujp_A Tryptophan synthase alp 39.2 35 0.0012 33.5 5.4 55 85-139 80-140 (271)
258 1ws6_A Methyltransferase; stru 39.0 1.1E+02 0.0038 25.9 8.2 67 24-91 64-131 (171)
259 2xxa_A Signal recognition part 38.9 55 0.0019 34.2 7.2 9 69-77 183-191 (433)
260 2hnk_A SAM-dependent O-methylt 38.7 1.2E+02 0.0041 27.9 9.0 60 20-79 82-157 (239)
261 3s5p_A Ribose 5-phosphate isom 38.5 83 0.0028 28.9 7.4 36 18-53 16-53 (166)
262 3l9w_A Glutathione-regulated p 38.4 49 0.0017 34.3 6.7 94 23-125 27-122 (413)
263 3rc1_A Sugar 3-ketoreductase; 38.3 2.2E+02 0.0077 28.1 11.5 106 23-142 27-139 (350)
264 1x3u_A Transcriptional regulat 37.7 31 0.001 26.3 3.8 52 220-272 23-75 (79)
265 3ffs_A Inosine-5-monophosphate 37.6 75 0.0026 33.0 7.9 65 57-124 146-211 (400)
266 2fhp_A Methylase, putative; al 37.6 1.9E+02 0.0066 24.7 9.8 68 24-91 68-138 (187)
267 1tqx_A D-ribulose-5-phosphate 37.3 53 0.0018 31.3 6.2 82 42-125 109-201 (227)
268 3gnn_A Nicotinate-nucleotide p 37.2 1.3E+02 0.0045 30.0 9.3 65 51-122 214-278 (298)
269 3vk5_A MOEO5; TIM barrel, tran 37.2 55 0.0019 32.6 6.4 56 70-126 200-257 (286)
270 1rpx_A Protein (ribulose-phosp 36.9 38 0.0013 31.6 5.1 55 69-124 140-206 (230)
271 2dul_A N(2),N(2)-dimethylguano 36.6 1.2E+02 0.004 31.0 9.1 76 24-105 72-165 (378)
272 1g5t_A COB(I)alamin adenosyltr 36.6 80 0.0027 29.6 7.2 58 57-114 106-170 (196)
273 2al1_A Enolase 1, 2-phospho-D- 36.6 58 0.002 34.2 6.9 107 30-139 219-362 (436)
274 1qpo_A Quinolinate acid phosph 36.6 85 0.0029 31.1 7.8 94 26-124 168-268 (284)
275 3szt_A QCSR, quorum-sensing co 36.4 20 0.00067 34.0 3.0 53 220-273 182-235 (237)
276 3axs_A Probable N(2),N(2)-dime 36.3 1.4E+02 0.0048 30.8 9.7 77 24-106 78-160 (392)
277 4had_A Probable oxidoreductase 36.2 2.1E+02 0.0072 27.9 10.8 110 20-142 20-136 (350)
278 4gud_A Imidazole glycerol phos 36.1 44 0.0015 30.6 5.3 43 25-75 4-46 (211)
279 2fqx_A Membrane lipoprotein TM 36.0 1.5E+02 0.0052 28.7 9.6 65 36-105 26-95 (318)
280 3p9n_A Possible methyltransfer 35.9 1.3E+02 0.0046 26.3 8.5 78 24-103 68-153 (189)
281 1zh8_A Oxidoreductase; TM0312, 35.8 2.2E+02 0.0077 27.9 10.9 108 22-141 17-131 (340)
282 4fyk_A Deoxyribonucleoside 5'- 35.8 1.6E+02 0.0055 26.4 8.8 102 32-141 17-141 (152)
283 3f4w_A Putative hexulose 6 pho 35.6 46 0.0016 30.4 5.3 83 55-139 11-99 (211)
284 2jjm_A Glycosyl transferase, g 35.5 62 0.0021 31.8 6.7 65 70-141 285-349 (394)
285 3q2i_A Dehydrogenase; rossmann 35.5 1.9E+02 0.0063 28.5 10.3 107 22-141 12-124 (354)
286 3jy6_A Transcriptional regulat 35.1 1.4E+02 0.0049 27.6 8.9 63 36-105 26-94 (276)
287 3sgz_A Hydroxyacid oxidase 2; 35.1 1.7E+02 0.0057 29.9 9.9 85 37-124 207-300 (352)
288 3tsa_A SPNG, NDP-rhamnosyltran 35.0 71 0.0024 31.4 7.1 73 23-103 1-142 (391)
289 2akz_A Gamma enolase, neural; 34.6 62 0.0021 34.0 6.7 107 30-139 217-359 (439)
290 1gox_A (S)-2-hydroxy-acid oxid 34.5 1.5E+02 0.005 30.2 9.4 86 36-124 214-308 (370)
291 3mz0_A Inositol 2-dehydrogenas 34.5 1.7E+02 0.0057 28.8 9.7 107 24-142 3-116 (344)
292 2khz_A C-MYC-responsive protei 34.4 61 0.0021 29.1 5.9 116 20-143 8-152 (165)
293 3inp_A D-ribulose-phosphate 3- 33.9 76 0.0026 30.7 6.8 83 55-139 41-130 (246)
294 3lab_A Putative KDPG (2-keto-3 33.4 88 0.003 29.8 7.0 55 82-137 49-104 (217)
295 3cea_A MYO-inositol 2-dehydrog 33.3 1.4E+02 0.0048 29.1 8.9 106 22-139 7-118 (346)
296 3u3x_A Oxidoreductase; structu 33.2 1.3E+02 0.0044 30.1 8.7 107 22-141 25-137 (361)
297 3llv_A Exopolyphosphatase-rela 33.1 2.1E+02 0.0072 23.7 9.4 27 96-124 96-122 (141)
298 3ec7_A Putative dehydrogenase; 33.0 1.2E+02 0.0041 30.2 8.4 109 23-142 23-137 (357)
299 1x1o_A Nicotinate-nucleotide p 32.9 2.3E+02 0.0079 27.9 10.3 92 26-124 169-267 (286)
300 3dzc_A UDP-N-acetylglucosamine 32.9 1.1E+02 0.0038 30.8 8.3 42 95-141 325-366 (396)
301 1i1q_B Anthranilate synthase c 32.8 47 0.0016 30.1 4.9 51 24-75 1-54 (192)
302 4hkt_A Inositol 2-dehydrogenas 32.6 1.9E+02 0.0065 28.1 9.7 105 23-141 3-112 (331)
303 1vc4_A Indole-3-glycerol phosp 32.6 59 0.002 31.4 5.8 84 37-124 141-235 (254)
304 1viz_A PCRB protein homolog; s 32.4 62 0.0021 31.3 5.9 55 57-124 23-83 (240)
305 3k9c_A Transcriptional regulat 32.1 84 0.0029 29.6 6.8 65 35-106 29-98 (289)
306 1izc_A Macrophomate synthase i 32.0 2.7E+02 0.0091 28.1 10.8 82 56-139 52-139 (339)
307 2iuy_A Avigt4, glycosyltransfe 31.9 42 0.0014 32.4 4.6 106 24-141 189-307 (342)
308 3w01_A Heptaprenylglyceryl pho 31.8 41 0.0014 32.5 4.4 50 69-125 36-87 (235)
309 1wl8_A GMP synthase [glutamine 31.8 43 0.0015 30.2 4.4 48 25-75 2-49 (189)
310 3dqp_A Oxidoreductase YLBE; al 31.3 1.6E+02 0.0056 26.3 8.4 30 24-53 1-30 (219)
311 3c0k_A UPF0064 protein YCCW; P 31.3 1.3E+02 0.0045 30.4 8.5 54 24-77 244-301 (396)
312 3snr_A Extracellular ligand-bi 31.2 1.3E+02 0.0045 28.7 8.1 70 37-110 153-230 (362)
313 1p4w_A RCSB; solution structur 30.8 30 0.001 28.6 2.9 46 228-273 48-94 (99)
314 2h6r_A Triosephosphate isomera 30.8 2.5E+02 0.0085 26.1 9.8 97 24-124 83-198 (219)
315 2yxd_A Probable cobalt-precorr 30.7 2.4E+02 0.0084 23.8 10.4 74 22-103 56-131 (183)
316 4e38_A Keto-hydroxyglutarate-a 30.4 1.5E+02 0.005 28.5 8.1 95 39-137 27-124 (232)
317 1qap_A Quinolinic acid phospho 30.3 3.6E+02 0.012 26.6 11.2 91 26-124 182-279 (296)
318 2f6u_A GGGPS, (S)-3-O-geranylg 30.3 50 0.0017 31.8 4.8 58 57-124 23-83 (234)
319 3bt7_A TRNA (uracil-5-)-methyl 30.3 1.2E+02 0.0042 30.3 8.0 77 24-104 236-327 (369)
320 1f0k_A MURG, UDP-N-acetylgluco 30.2 1.2E+02 0.004 29.3 7.6 53 84-139 264-322 (364)
321 3nav_A Tryptophan synthase alp 30.2 1.9E+02 0.0065 28.2 9.1 96 27-125 130-237 (271)
322 3db2_A Putative NADPH-dependen 30.2 1.6E+02 0.0054 29.0 8.7 108 22-142 4-116 (354)
323 3qp6_A CVIR transcriptional re 30.1 31 0.001 33.4 3.3 55 220-275 204-259 (265)
324 2pyy_A Ionotropic glutamate re 30.1 1.3E+02 0.0045 26.1 7.4 49 22-77 111-159 (228)
325 3r3h_A O-methyltransferase, SA 29.8 41 0.0014 31.7 4.1 59 20-78 82-145 (242)
326 1ydw_A AX110P-like protein; st 29.7 3.2E+02 0.011 26.8 11.0 109 22-140 5-119 (362)
327 1wxx_A TT1595, hypothetical pr 29.6 1.4E+02 0.0049 29.9 8.4 54 24-77 232-287 (382)
328 1l3l_A Transcriptional activat 29.2 38 0.0013 31.7 3.7 52 220-272 180-232 (234)
329 4fzr_A SSFS6; structural genom 29.2 1.4E+02 0.0047 29.5 8.1 75 21-103 13-151 (398)
330 3abi_A Putative uncharacterize 29.2 89 0.0031 31.3 6.7 92 22-124 15-106 (365)
331 4fxs_A Inosine-5'-monophosphat 29.2 1E+02 0.0035 32.7 7.4 65 57-124 233-299 (496)
332 2qjg_A Putative aldolase MJ040 29.2 3.7E+02 0.013 25.3 12.0 69 69-141 179-258 (273)
333 3kux_A Putative oxidoreductase 29.1 2.9E+02 0.0099 27.1 10.5 108 19-141 3-116 (352)
334 2i2c_A Probable inorganic poly 29.1 76 0.0026 30.7 5.9 86 24-142 1-93 (272)
335 2rir_A Dipicolinate synthase, 29.0 46 0.0016 32.5 4.3 102 19-124 3-125 (300)
336 3c6k_A Spermine synthase; sper 29.0 1.1E+02 0.0037 31.7 7.3 56 24-79 229-294 (381)
337 3moi_A Probable dehydrogenase; 28.7 1.8E+02 0.0063 29.1 9.0 106 23-142 2-114 (387)
338 3r2g_A Inosine 5'-monophosphat 28.7 1.4E+02 0.0048 30.6 8.0 65 57-124 102-168 (361)
339 3kke_A LACI family transcripti 28.4 1.5E+02 0.0053 27.9 8.0 67 34-106 32-104 (303)
340 2fpo_A Methylase YHHF; structu 28.3 1.8E+02 0.0063 26.0 8.2 65 24-91 78-144 (202)
341 2iuy_A Avigt4, glycosyltransfe 28.2 1.3E+02 0.0043 28.9 7.4 56 23-80 3-95 (342)
342 2b78_A Hypothetical protein SM 28.1 1.3E+02 0.0045 30.5 7.8 53 25-77 237-293 (385)
343 2px0_A Flagellar biosynthesis 28.0 85 0.0029 30.8 6.1 58 23-83 134-194 (296)
344 3l4b_C TRKA K+ channel protien 28.0 1.3E+02 0.0046 27.3 7.3 93 23-124 23-118 (218)
345 2hqb_A Transcriptional activat 28.0 1.6E+02 0.0055 28.1 8.1 66 35-105 25-96 (296)
346 4gqa_A NAD binding oxidoreduct 27.9 1.7E+02 0.0058 29.5 8.6 111 19-142 22-146 (412)
347 3vnd_A TSA, tryptophan synthas 27.9 2.8E+02 0.0095 26.9 9.8 97 27-125 128-235 (267)
348 3h2s_A Putative NADH-flavin re 27.7 75 0.0026 28.5 5.3 57 24-82 1-57 (224)
349 3gjy_A Spermidine synthase; AP 27.6 61 0.0021 32.6 5.0 57 23-81 113-171 (317)
350 3brq_A HTH-type transcriptiona 27.6 2.2E+02 0.0076 26.2 8.9 67 34-105 38-110 (296)
351 2as0_A Hypothetical protein PH 27.4 1.7E+02 0.0058 29.5 8.5 54 24-77 241-297 (396)
352 1p4c_A L(+)-mandelate dehydrog 27.4 1.2E+02 0.0043 30.9 7.5 87 35-124 213-306 (380)
353 2qai_A V-type ATP synthase sub 27.3 2.3E+02 0.0078 24.0 7.9 70 24-106 1-79 (111)
354 2nli_A Lactate oxidase; flavoe 27.3 1.9E+02 0.0066 29.3 8.8 87 35-124 217-312 (368)
355 1lst_A Lysine, arginine, ornit 27.2 1.4E+02 0.0047 26.5 7.0 52 23-77 111-162 (239)
356 3ezy_A Dehydrogenase; structur 27.2 2.4E+02 0.0081 27.6 9.4 106 24-142 3-114 (344)
357 2q0o_A Probable transcriptiona 27.1 33 0.0011 32.2 2.9 52 220-272 182-234 (236)
358 3qk7_A Transcriptional regulat 27.0 1.8E+02 0.0062 27.2 8.2 65 35-105 28-97 (294)
359 3td9_A Branched chain amino ac 26.9 3.6E+02 0.012 25.8 10.6 81 25-109 151-243 (366)
360 3c3k_A Alanine racemase; struc 26.8 1.6E+02 0.0056 27.4 7.8 64 35-105 26-95 (285)
361 2p10_A MLL9387 protein; putati 26.6 4.2E+02 0.014 26.2 10.7 79 45-126 161-260 (286)
362 2ixa_A Alpha-N-acetylgalactosa 26.5 2.5E+02 0.0084 28.8 9.7 114 23-142 20-141 (444)
363 3khj_A Inosine-5-monophosphate 26.2 1.4E+02 0.0047 30.4 7.5 65 57-124 107-172 (361)
364 3tha_A Tryptophan synthase alp 26.2 49 0.0017 32.3 3.9 46 96-142 88-139 (252)
365 2gek_A Phosphatidylinositol ma 26.2 1.9E+02 0.0064 28.1 8.4 35 19-53 16-58 (406)
366 3bbl_A Regulatory protein of L 26.0 2.1E+02 0.0072 26.6 8.4 66 34-105 25-96 (287)
367 3c3p_A Methyltransferase; NP_9 25.9 2.2E+02 0.0077 25.3 8.3 66 20-91 78-146 (210)
368 2i7c_A Spermidine synthase; tr 25.9 1.2E+02 0.0043 29.1 6.9 58 21-81 100-163 (283)
369 2qr6_A IMP dehydrogenase/GMP r 25.8 3.2E+02 0.011 27.6 10.3 78 43-124 151-238 (393)
370 1jub_A Dihydroorotate dehydrog 25.7 2.2E+02 0.0074 27.6 8.7 66 57-124 109-191 (311)
371 2igt_A SAM dependent methyltra 25.7 1.2E+02 0.0041 30.2 6.8 54 24-77 176-233 (332)
372 1xea_A Oxidoreductase, GFO/IDH 25.5 2E+02 0.007 27.8 8.4 105 24-141 3-112 (323)
373 1dbq_A Purine repressor; trans 25.4 2.5E+02 0.0085 25.9 8.8 66 35-105 25-96 (289)
374 1qpz_A PURA, protein (purine n 25.1 2.4E+02 0.0081 27.1 8.8 66 35-105 76-147 (340)
375 3s28_A Sucrose synthase 1; gly 25.1 2E+02 0.0069 32.6 9.2 108 24-141 604-729 (816)
376 2gjl_A Hypothetical protein PA 24.9 2.5E+02 0.0086 27.5 9.1 62 55-125 84-145 (328)
377 3lkv_A Uncharacterized conserv 24.9 65 0.0022 31.2 4.6 103 20-132 137-246 (302)
378 3cvo_A Methyltransferase-like 24.8 73 0.0025 29.9 4.7 113 23-139 51-199 (202)
379 2nzl_A Hydroxyacid oxidase 1; 24.6 1.8E+02 0.0061 29.9 8.0 86 36-124 241-335 (392)
380 2nvw_A Galactose/lactose metab 24.4 2.4E+02 0.0081 29.6 9.1 107 23-140 39-162 (479)
381 3ntv_A MW1564 protein; rossman 24.4 1.3E+02 0.0044 27.7 6.4 64 23-91 95-162 (232)
382 1fse_A GERE; helix-turn-helix 24.3 68 0.0023 23.8 3.7 43 228-270 25-68 (74)
383 3sr7_A Isopentenyl-diphosphate 24.3 5.7E+02 0.019 25.9 12.1 86 35-124 194-306 (365)
384 3tqp_A Enolase; energy metabol 24.3 89 0.003 32.7 5.7 108 31-139 216-354 (428)
385 3b0p_A TRNA-dihydrouridine syn 24.2 3.7E+02 0.012 26.9 10.2 39 85-124 185-224 (350)
386 1kbi_A Cytochrome B2, L-LCR; f 24.2 3E+02 0.01 29.3 9.9 86 36-124 332-431 (511)
387 4avf_A Inosine-5'-monophosphat 24.1 1.4E+02 0.0049 31.5 7.4 67 55-124 229-297 (490)
388 3m2t_A Probable dehydrogenase; 24.1 2.4E+02 0.0083 27.9 8.8 108 23-142 5-118 (359)
389 3g8r_A Probable spore coat pol 24.0 2.6E+02 0.0088 28.5 8.9 78 34-116 78-155 (350)
390 2fep_A Catabolite control prot 24.0 2.6E+02 0.0089 26.0 8.6 65 35-105 34-104 (289)
391 2nv1_A Pyridoxal biosynthesis 23.9 56 0.0019 32.2 3.9 42 84-125 195-238 (305)
392 2uva_G Fatty acid synthase bet 23.8 1.3E+02 0.0044 37.9 7.8 85 39-125 684-795 (2060)
393 3e18_A Oxidoreductase; dehydro 23.7 3.9E+02 0.013 26.4 10.3 105 23-142 5-115 (359)
394 2ekc_A AQ_1548, tryptophan syn 23.6 2.7E+02 0.0092 26.6 8.7 39 86-125 196-234 (262)
395 3k4h_A Putative transcriptiona 23.6 1.6E+02 0.0055 27.3 7.0 65 35-105 31-101 (292)
396 2rdx_A Mandelate racemase/muco 23.6 1.4E+02 0.0047 30.1 6.9 79 55-138 201-283 (379)
397 3rjt_A Lipolytic protein G-D-S 23.5 2E+02 0.0068 25.0 7.3 60 18-77 3-91 (216)
398 1tqj_A Ribulose-phosphate 3-ep 23.5 62 0.0021 30.6 4.0 79 42-124 107-200 (230)
399 3st7_A Capsular polysaccharide 23.5 2.7E+02 0.0092 27.2 9.0 79 24-105 1-95 (369)
400 3uuw_A Putative oxidoreductase 23.5 1.9E+02 0.0066 27.7 7.8 107 23-142 6-116 (308)
401 2rgy_A Transcriptional regulat 23.4 2.5E+02 0.0086 26.1 8.4 65 35-105 26-99 (290)
402 2qh8_A Uncharacterized protein 23.3 2.4E+02 0.0083 26.6 8.4 62 33-102 23-96 (302)
403 1zgh_A Methionyl-tRNA formyltr 23.3 79 0.0027 30.9 4.8 61 15-77 22-85 (260)
404 2yzr_A Pyridoxal biosynthesis 23.2 1.3E+02 0.0046 30.4 6.5 59 84-142 228-293 (330)
405 3qja_A IGPS, indole-3-glycerol 23.2 2E+02 0.007 27.9 7.8 56 85-140 102-159 (272)
406 3ctl_A D-allulose-6-phosphate 23.0 2.2E+02 0.0074 27.0 7.8 81 55-139 14-102 (231)
407 3pfn_A NAD kinase; structural 22.9 1.2E+02 0.0042 31.1 6.3 101 24-143 39-165 (365)
408 1jcn_A Inosine monophosphate d 22.9 2E+02 0.0069 30.3 8.3 66 56-124 256-323 (514)
409 1qv9_A F420-dependent methylen 22.8 1.7E+02 0.0057 28.7 6.7 56 69-125 64-119 (283)
410 2glx_A 1,5-anhydro-D-fructose 22.7 5E+02 0.017 24.9 10.7 105 24-141 1-111 (332)
411 3vkj_A Isopentenyl-diphosphate 22.6 1.9E+02 0.0066 29.4 7.8 67 56-124 137-217 (368)
412 3inp_A D-ribulose-phosphate 3- 22.6 1.1E+02 0.0039 29.5 5.7 55 69-124 156-222 (246)
413 4a29_A Engineered retro-aldol 22.5 5.4E+02 0.019 25.0 12.9 86 36-125 142-233 (258)
414 2yw3_A 4-hydroxy-2-oxoglutarat 22.4 2.5E+02 0.0084 25.9 7.9 89 46-142 103-200 (207)
415 3ajx_A 3-hexulose-6-phosphate 22.3 3E+02 0.01 24.7 8.4 85 36-124 92-185 (207)
416 3hm2_A Precorrin-6Y C5,15-meth 22.1 2.6E+02 0.009 23.6 7.7 56 23-81 49-106 (178)
417 4eyg_A Twin-arginine transloca 21.8 5E+02 0.017 24.6 10.5 81 25-109 141-236 (368)
418 3egc_A Putative ribose operon 21.8 2.4E+02 0.0081 26.2 7.8 66 35-106 26-97 (291)
419 3e9m_A Oxidoreductase, GFO/IDH 21.7 2.7E+02 0.0094 27.0 8.6 109 23-141 5-116 (330)
420 3fro_A GLGA glycogen synthase; 21.7 2.4E+02 0.0083 27.5 8.2 32 23-54 2-42 (439)
421 3sc6_A DTDP-4-dehydrorhamnose 21.6 1.8E+02 0.0061 27.1 6.9 53 24-78 6-65 (287)
422 3cni_A Putative ABC type-2 tra 21.6 1.4E+02 0.0048 25.9 5.8 52 21-75 8-61 (156)
423 3ip3_A Oxidoreductase, putativ 21.5 1E+02 0.0035 30.3 5.4 36 107-142 80-117 (337)
424 3tb6_A Arabinose metabolism tr 21.5 3.7E+02 0.013 24.6 9.1 69 34-105 32-108 (298)
425 1qo2_A Molecule: N-((5-phospho 21.5 96 0.0033 29.0 4.9 39 85-124 63-101 (241)
426 2vpt_A Lipolytic enzyme; ester 21.4 2.5E+02 0.0084 25.0 7.6 85 22-106 4-130 (215)
427 3clo_A Transcriptional regulat 21.3 52 0.0018 31.4 3.0 52 220-272 204-256 (258)
428 3gr7_A NADPH dehydrogenase; fl 21.1 2.3E+02 0.008 28.3 8.0 39 85-123 266-304 (340)
429 3btv_A Galactose/lactose metab 21.1 1.8E+02 0.0061 29.9 7.3 108 22-140 19-143 (438)
430 3vzx_A Heptaprenylglyceryl pho 21.1 67 0.0023 30.8 3.7 58 58-124 22-81 (228)
431 1vcf_A Isopentenyl-diphosphate 21.0 2.7E+02 0.0092 27.5 8.4 45 83-127 242-288 (332)
432 3dbi_A Sugar-binding transcrip 20.8 4E+02 0.014 25.3 9.5 67 34-105 80-152 (338)
433 1id1_A Putative potassium chan 20.8 2.9E+02 0.01 23.3 7.6 94 23-123 26-123 (153)
434 3ew7_A LMO0794 protein; Q8Y8U8 20.8 93 0.0032 27.7 4.5 53 24-79 1-53 (221)
435 3tha_A Tryptophan synthase alp 20.8 2.7E+02 0.0093 26.9 8.0 97 26-125 120-227 (252)
436 3oti_A CALG3; calicheamicin, T 20.7 2.1E+02 0.007 28.2 7.5 33 23-55 20-56 (398)
437 1fy2_A Aspartyl dipeptidase; s 20.7 1.3E+02 0.0046 28.2 5.7 62 23-92 31-98 (229)
438 1tlt_A Putative oxidoreductase 20.7 1.8E+02 0.0063 28.1 6.9 104 23-141 5-114 (319)
439 3bfj_A 1,3-propanediol oxidore 20.6 1.6E+02 0.0053 29.9 6.6 63 24-91 34-111 (387)
440 3vkj_A Isopentenyl-diphosphate 20.6 5.8E+02 0.02 25.8 10.9 87 35-125 175-296 (368)
441 3tqv_A Nicotinate-nucleotide p 20.5 2E+02 0.0069 28.5 7.1 51 87-139 188-239 (287)
442 1wa3_A 2-keto-3-deoxy-6-phosph 20.4 4.6E+02 0.016 23.4 9.7 81 53-137 18-101 (205)
443 3oa2_A WBPB; oxidoreductase, s 20.4 1.3E+02 0.0044 29.6 5.7 111 23-142 3-123 (318)
444 1o2d_A Alcohol dehydrogenase, 20.4 1.4E+02 0.0047 30.2 6.1 63 24-91 41-117 (371)
445 3e3m_A Transcriptional regulat 20.3 2.8E+02 0.0095 26.8 8.3 63 35-103 88-156 (355)
446 1rpx_A Protein (ribulose-phosp 20.3 4.3E+02 0.015 24.1 9.2 57 83-139 55-114 (230)
447 3rpe_A MDAB, modulator of drug 20.3 2.1E+02 0.0073 26.9 7.1 15 19-33 21-35 (218)
448 2b2c_A Spermidine synthase; be 20.3 1.7E+02 0.0059 28.8 6.7 57 21-80 130-192 (314)
449 1ii5_A SLR1257 protein; membra 20.2 2.6E+02 0.0089 24.3 7.4 49 22-77 115-163 (233)
450 3lkb_A Probable branched-chain 20.2 4.4E+02 0.015 25.5 9.7 6 70-75 199-204 (392)
451 3e8x_A Putative NAD-dependent 20.1 1.1E+02 0.0039 27.7 5.1 55 22-78 20-75 (236)
452 3c85_A Putative glutathione-re 20.1 4.3E+02 0.015 22.9 9.2 41 23-64 39-80 (183)
453 2iks_A DNA-binding transcripti 20.0 4E+02 0.014 24.6 9.0 66 35-105 38-109 (293)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=1.1e-25 Score=203.71 Aligned_cols=121 Identities=30% Similarity=0.556 Sum_probs=111.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EM 95 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~ 95 (524)
+..++|||||||++.++..++.+|+..||+ |.+|.+|.+|++.+++.. ||+||+|++||+|||+++++.||. .+
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 456799999999999999999999999997 568999999999998765 999999999999999999999974 36
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|||++|++.+.+...+++++||++||.|||+.++|..++++++++
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999988754
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.88 E-value=1.6e-21 Score=168.93 Aligned_cols=116 Identities=28% Similarity=0.400 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPVI 100 (524)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++.. +++|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999997654 9999999999999999999999643 689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
++|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998764
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.88 E-value=1.5e-21 Score=168.34 Aligned_cols=117 Identities=32% Similarity=0.503 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++...++|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998654 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 4
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.87 E-value=5.2e-24 Score=190.21 Aligned_cols=113 Identities=24% Similarity=0.386 Sum_probs=101.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++|||||||++.++..++.+|+..||+|+ ++.++++|++++++.. ||+||+|++||+|||+++++.++. .++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCEE
Confidence 358999999999999999999999999986 7899999999998765 999999999999999999999975 579999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
++|++.+... +.++|+++||.|||+.++|..+++++.
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 9999987653 346899999999999999999887654
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.87 E-value=4e-21 Score=169.57 Aligned_cols=120 Identities=35% Similarity=0.527 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diPV 99 (524)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 478999999999999999999999999999999999999998764 999999999999999999999964 458999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999987654
No 6
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.86 E-value=3.4e-21 Score=182.57 Aligned_cols=121 Identities=19% Similarity=0.301 Sum_probs=111.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLREC-QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diP 98 (524)
.+++||||||++..+..++.+|+.. +|.| ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3579999999999999999999876 5888 58999999999998765 999999999999999999999964 57899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
||++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999998754
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.86 E-value=8.2e-21 Score=166.91 Aligned_cols=120 Identities=21% Similarity=0.436 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHHhc--CCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLREN---RNNFDLVISDVYMPDMDGFKLLELVGL--EMD 96 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-V~~a~sg~eALe~L~e~---~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~d 96 (524)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+... ...||+||+|+.||+++|+++++.++. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 378999999999999999999988875 77899999999998761 124999999999999999999999964 457
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+|||++|+..+.....++++.||++||.||++.++|..+++.++..
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999988654
No 8
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.85 E-value=2.5e-21 Score=182.18 Aligned_cols=119 Identities=26% Similarity=0.436 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+++|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988654 499999999999999999999996 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999989999999999999999999999999999998764
No 9
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.85 E-value=2.2e-20 Score=162.70 Aligned_cols=119 Identities=28% Similarity=0.498 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
+++||||||++..+..++.+|+..||. |..+.++.+|++.+... ..||+||+|+.||+++|+++++.++. .+.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 479999999999999999999999995 88999999999988764 25999999999999999999999974 35899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|+..+.....++++.||++||.||++.++|..+++.++.+
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.4e-20 Score=165.18 Aligned_cols=119 Identities=29% Similarity=0.419 Sum_probs=105.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-----CCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-----EMD 96 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-----~~d 96 (524)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 4689999999999999999999999999999999999999998754 999999999999999999998862 356
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+|||++|+..+.+...++++.||++||.||++.++|..++..+...
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999887644
No 11
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.84 E-value=9.4e-20 Score=155.53 Aligned_cols=118 Identities=30% Similarity=0.420 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
++||||||++..+..++..|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998754 99999999999999999999886 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988753
No 12
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.84 E-value=6.9e-20 Score=164.91 Aligned_cols=120 Identities=29% Similarity=0.476 Sum_probs=112.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPV 99 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 58999999999999999999999999999999999999999765 49999999999999999999999753 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++|+..+.+...++++.||++||.||++.++|..+++.++++.+
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 13
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.84 E-value=6.9e-20 Score=155.84 Aligned_cols=117 Identities=27% Similarity=0.466 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..++..|+..||+|..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 48999999999999999999999999999999999999998764 9999999999999999999999766889999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988764
No 14
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.84 E-value=1.1e-19 Score=155.68 Aligned_cols=117 Identities=22% Similarity=0.432 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..++.+|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999988654 9999999999999999999999777889999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+..+.....++++.||++|+.||++.++|..+++.++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.84 E-value=9e-20 Score=159.47 Aligned_cols=119 Identities=28% Similarity=0.444 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
.++||||||++..+..++.+|+..||+|..+.++.++++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 368999999999999999999999999999999999999998754 99999999999999999999886 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988764
No 16
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.84 E-value=1.2e-19 Score=156.92 Aligned_cols=119 Identities=22% Similarity=0.394 Sum_probs=110.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIv 101 (524)
+.+||||||++..+..++.+|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999998764 4999999999999999999998864 57899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 17
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.84 E-value=2.1e-20 Score=183.19 Aligned_cols=120 Identities=28% Similarity=0.466 Sum_probs=113.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.++..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 478999999999999999999999999999999999999998764 999999999999999999999987889999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|+..+.+.+.+++++||++||.||++.++|..+|+.++++..
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999987654
No 18
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.84 E-value=1.3e-20 Score=175.44 Aligned_cols=119 Identities=21% Similarity=0.377 Sum_probs=110.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+++|||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999997654 99999999999999999999886 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998877653
No 19
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.83 E-value=8e-20 Score=161.17 Aligned_cols=119 Identities=24% Similarity=0.466 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 579999999999999999999998999999999999999998754 999999999999999999999976568999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988754
No 20
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.83 E-value=2.5e-20 Score=164.04 Aligned_cols=122 Identities=16% Similarity=0.324 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHh-cCCCceEEEEeCCCC-CCCHHHHHHHHhc---CC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE-CQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMP-DMDGFKLLELVGL---EM 95 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~-~gy~V~~a~sg~eALe~L~e-~~~~pDLVIlDi~MP-dmdGleLLe~Lr~---~~ 95 (524)
.+++||||||++..+..++.+|+. .||+|..+.++.+|++.+.+ . .||+||+|+.|| +++|+++++.++. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~--~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLD--SITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCC--CCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCC--CCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 458999999999999999999999 99999999999999999876 4 499999999999 9999999999864 67
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
++|||++|+..+.+...++++.||++||.||++.++|..+++.++++...
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999887543
No 21
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.83 E-value=1.5e-19 Score=154.93 Aligned_cols=118 Identities=22% Similarity=0.374 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
.+||||||++..+..++.+|+..||+|..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999988999999999999999998754 9999999999999999999999755789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987653
No 22
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.83 E-value=1.1e-19 Score=154.75 Aligned_cols=118 Identities=29% Similarity=0.392 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
++||||||++..+..++.+|+..||+|..+.++.+++..+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 68999999999999999999999999999999999999887654 9999999999999999999999877889999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988753
No 23
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.83 E-value=1e-19 Score=156.58 Aligned_cols=117 Identities=22% Similarity=0.473 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999999999999999999999998764 999999999999999999998864 678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887643
No 24
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.83 E-value=8.3e-21 Score=182.47 Aligned_cols=120 Identities=23% Similarity=0.350 Sum_probs=111.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQ-YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~g-y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
++||||||++..+..++.+|+..+ |.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 789999999999999999999876 8855 7999999999998765 99999999999999999999886 46889999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
++|+..+.+...++++.||++||.||++.++|..+++.++++...
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 124 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSL 124 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCee
Confidence 999999999999999999999999999999999999999987643
No 25
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.83 E-value=2.3e-19 Score=158.17 Aligned_cols=122 Identities=29% Similarity=0.497 Sum_probs=113.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.+....||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4799999999999999999999999999999999999999985334699999999999999999999885 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654
No 26
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.83 E-value=1.9e-19 Score=161.32 Aligned_cols=122 Identities=30% Similarity=0.424 Sum_probs=113.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCc
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diP 98 (524)
...+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. |||||+|+.||+++|+++++.++ ..+.+|
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCe
Confidence 445689999999999999999999999999999999999999998764 99999999999999999999886 467899
Q ss_pred EEEEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 99 VVMLSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~G-A~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
||++|+..+.....++++.| |++||.||++.++|..+|+.++++.
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999999999998764
No 27
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.83 E-value=2.3e-19 Score=154.90 Aligned_cols=119 Identities=29% Similarity=0.525 Sum_probs=109.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDL 97 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~di 97 (524)
..++||||||++..+..++.+|+..|| .|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 357899999999999999999999899 688999999999998754 4999999999999999999999975 3679
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|||++|+..+.....++++.||++|+.||++.++|..+++.++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765
No 28
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.83 E-value=3.1e-21 Score=184.88 Aligned_cols=122 Identities=9% Similarity=0.015 Sum_probs=106.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHHH-HHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--CCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE-CQYEVTV-TNRAITALKM-LRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMD 96 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~-~gy~V~~-a~sg~eALe~-L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~d 96 (524)
..++||||||++..+..++.+|+. .||.|+. +.++.+++.. +... .||+||+|+.||++||+++++.++. .++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 358999999999999999999984 6898864 4556666553 4443 4999999999999999999999965 789
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
+|||++|+..+......+++.||++||.||++.++|..+++.++++...
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 132 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMW 132 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCB
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEe
Confidence 9999999999999999999999999999999999999999999987543
No 29
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.83 E-value=1.6e-19 Score=154.25 Aligned_cols=115 Identities=25% Similarity=0.446 Sum_probs=106.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
++||||||++..+..++.+|+..||++ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIV 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEE
Confidence 689999999999999999999999995 58999999999998765 99999999999999999999885 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
+|+..+.....++++.||++||.||++.++|..++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998763
No 30
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.83 E-value=2.8e-19 Score=159.74 Aligned_cols=124 Identities=27% Similarity=0.424 Sum_probs=111.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHh-------cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRE-------NRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e-------~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
.+++||||||++..+..++.+|+..|+ +|..+.++.+|++.++. ....||+||+|+.||+++|+++++.++
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 358999999999999999999999998 89999999999999961 124599999999999999999999996
Q ss_pred c---CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 93 L---EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 93 ~---~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
. .+++|||++|+..+.....++++.||++||.||++.++|..+++++.+....
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSV 138 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTT
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 5 4689999999999999999999999999999999999999999999776543
No 31
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.83 E-value=7e-20 Score=160.87 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++. .+++|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 4589999999999999999999999999999999999999998765 999999999999999999999964 57899
Q ss_pred EEEEecCCCHHHHH-HHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 99 VVMLSAYSDTKLVM-KGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 99 VIvlTa~~d~~~~~-~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
||++|+..+..... ++++.||++||.||++.++|..++++++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 99999998887777 899999999999999999999999999987654
No 32
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.83 E-value=4e-20 Score=162.55 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh-cCCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVG-LEMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~Lr-~~~diP 98 (524)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+.+. .||+||+|+.||+ ++|+++++.++ ..+++|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 457999999999999999999999999999999999999988654 4999999999999 99999999986 457899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
||++|+..+.+...++++.||++||.||++.++|..++++++.+...
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999887643
No 33
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.82 E-value=2.7e-19 Score=156.41 Aligned_cols=123 Identities=22% Similarity=0.323 Sum_probs=110.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--CCCCc
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLP 98 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~diP 98 (524)
+.+.+||||||++..+..++.+|+..||+|..+.++.+++..+.+. ..||+||+|+.||+++|+++++.++. .+.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 3468999999999999999999999999999999999999998764 25999999999999999999999975 47899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
||++|+..+.+...++++.||++||.||++.++|..+++++..+..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999999887653
No 34
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.82 E-value=9.8e-20 Score=157.44 Aligned_cols=119 Identities=32% Similarity=0.474 Sum_probs=109.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDL 97 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~di 97 (524)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 347899999999999999999999899 788899999999999865 4999999999999999999999975 3689
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|||++|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988764
No 35
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.82 E-value=1.2e-19 Score=155.53 Aligned_cols=117 Identities=25% Similarity=0.462 Sum_probs=103.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diPVI 100 (524)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 58999999999999999999999999999999999999988764 999999999999999999999974 3589999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
++|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999988899999999999999999999999999988754
No 36
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.82 E-value=6.9e-20 Score=159.41 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=111.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.++||||||++..+..++.+|+..||+++ .+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++ ..+++|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999998 8999999999998765 99999999999999999999986 56789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccCCC
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDP 147 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~~~ 147 (524)
++|+..+.....++++.||++||.||++.++|..+++.++++....+
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 125 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFP 125 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBCC
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEeC
Confidence 99999999999999999999999999999999999999998766543
No 37
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.82 E-value=2.1e-19 Score=175.06 Aligned_cols=121 Identities=34% Similarity=0.509 Sum_probs=113.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVI 100 (524)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+++|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999998765 999999999999999999999964 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|+..+.....+++++||++||.||++.++|..+++.++++..
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998643
No 38
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.82 E-value=2.4e-19 Score=160.27 Aligned_cols=122 Identities=19% Similarity=0.304 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEeCCCCCCCHHHHHHHHhcC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLREN-----RNNFDLVISDVYMPDMDGFKLLELVGLE 94 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~-----~~~pDLVIlDi~MPdmdGleLLe~Lr~~ 94 (524)
..++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.++..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 358999999999999999999998877 788999999999998742 1359999999999999999999999753
Q ss_pred ---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 95 ---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 95 ---~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+.+|||++|+..+...+.++++.||++||.||++.++|..+++.+++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999987654
No 39
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.82 E-value=2.3e-19 Score=157.06 Aligned_cols=120 Identities=20% Similarity=0.352 Sum_probs=107.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQ--YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPV 99 (524)
.++||||||++..+..++.+|+..+ +.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 3689999999999999999999866 45668999999999998765 999999999999999999999964 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999887644
No 40
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.82 E-value=5.1e-20 Score=162.65 Aligned_cols=121 Identities=22% Similarity=0.307 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr~~~diPVIv 101 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.++..+++|||+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 47999999999999999999999999999999999999999762 25999999999995 99999999997678999999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+..+.+...++++.||++||.||++.++|..+++.++++.+
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999998888999999999999999999999999999987643
No 41
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.82 E-value=1.5e-19 Score=156.73 Aligned_cols=120 Identities=28% Similarity=0.462 Sum_probs=103.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 357999999999999999999999999999999999999999765 499999999999999999999886 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~-~~eeL~~aI~~vlr~~ 143 (524)
++|+..+.....++++.||++||.||+ +.++|..+++.++++.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999998764
No 42
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.82 E-value=1.4e-19 Score=172.26 Aligned_cols=122 Identities=25% Similarity=0.396 Sum_probs=107.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc-----------CCCceEEEEeCCCCCCCHHHHH
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLREN-----------RNNFDLVISDVYMPDMDGFKLL 88 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~gy-~V~~a~sg~eALe~L~e~-----------~~~pDLVIlDi~MPdmdGleLL 88 (524)
..+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.+. ...|||||+|+.||+++|++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 3568999999999999999999999998 899999999999999864 1259999999999999999999
Q ss_pred HHHhc-----CCCCcEEEEecCC-CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 89 ELVGL-----EMDLPVVMLSAYS-DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 89 e~Lr~-----~~diPVIvlTa~~-d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+.|+. .+++|||++|+.. +.+...++++.||++||.||++ +|..+|+.++++.+
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 99875 4789999999998 8888999999999999999999 89999998876543
No 43
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.82 E-value=2e-19 Score=156.29 Aligned_cols=118 Identities=29% Similarity=0.548 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--CCCCcE
Q 009824 24 MRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPV 99 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~diPV 99 (524)
++||||||++..+..++.+|+.. ||+++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 68999999999999999999987 88876 7899999999998765 999999999999999999999864 467899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988754
No 44
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.82 E-value=3.4e-19 Score=156.62 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=111.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC---CCceEEEEeCCCCCCCHHHHHHHHhc--
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENR---NNFDLVISDVYMPDMDGFKLLELVGL-- 93 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~---~~pDLVIlDi~MPdmdGleLLe~Lr~-- 93 (524)
...++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.+.. ..||+||+|+.||+++|+++++.++.
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 86 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHF 86 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999999999999 8889999999999998710 24999999999999999999998864
Q ss_pred ---CCCCcEEEEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 94 ---EMDLPVVMLSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 94 ---~~diPVIvlTa~~d~~~~~~al~~G-A~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
.+.+|||++|+..+.....+++..| |++||.||++.++|..+|+++.....
T Consensus 87 ~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 87 QPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp GGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred hhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999 99999999999999999999876543
No 45
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.82 E-value=2e-19 Score=156.35 Aligned_cols=120 Identities=24% Similarity=0.337 Sum_probs=104.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
..++||||||++..+..++.+|+ .+|+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 45799999999999999999998 7999999999999999998765 999999999999999999999975 45899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
||++|+..+... .++++.||++||.||++.++|..+++.++++...
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 999999988877 8999999999999999999999999999987643
No 46
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.82 E-value=2.6e-19 Score=158.21 Aligned_cols=120 Identities=18% Similarity=0.331 Sum_probs=111.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDL 97 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~--V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~di 97 (524)
+++||||||++..+..++.+|+..||. |..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcccccCC
Confidence 579999999999999999999999987 88999999999999765 4999999999999999999999975 5789
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhcc
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRKK 144 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~-~~eeL~~aI~~vlr~~~ 144 (524)
|||++|+..+.+...++++.||++||.||+ +.++|..+|+.++++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999998754
No 47
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.82 E-value=2.1e-19 Score=157.20 Aligned_cols=121 Identities=23% Similarity=0.375 Sum_probs=112.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 3589999999999999999999998999999999999999998765 99999999999999999999886 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
No 48
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.82 E-value=9.9e-20 Score=157.30 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=106.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diPV 99 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999964 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+... .+++..||++||.||++.++|..++++..+..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999998888 88999999999999999999999999876543
No 49
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.81 E-value=6.8e-19 Score=154.18 Aligned_cols=121 Identities=22% Similarity=0.392 Sum_probs=111.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE-CQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMD 96 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~-~gy~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~d 96 (524)
.+++||||||++..+..++.+|+. .||+ |..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 468999999999999999999998 8999 889999999999998764 999999999999999999999975 578
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|||++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999988754
No 50
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.81 E-value=3.6e-19 Score=158.96 Aligned_cols=123 Identities=22% Similarity=0.361 Sum_probs=111.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQ--YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMD 96 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~d 96 (524)
...+++||||||++..+..++.+|+..+ +.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++ ..+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3346899999999999999999999876 78889999999999997654 99999999999999999999886 4678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 999999999999999999999999999999999999999999988754
No 51
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.81 E-value=2.8e-20 Score=187.47 Aligned_cols=118 Identities=20% Similarity=0.328 Sum_probs=108.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLLe~Lr~~~diPVI 100 (524)
+.+||||||++.++..++.+|+..||+|+ .+.++.+|++.+.+.. |||||+|+.|| +|||+++++.|+..+++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 9999999999998765 99999999999 79999999999765599999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|++.+ ...+++++||++||.||++.++|..+|+.++++..
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9999864 46778999999999999999999999999998753
No 52
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.81 E-value=5.2e-19 Score=153.72 Aligned_cols=122 Identities=18% Similarity=0.322 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEeCCCCCCCHHHHHHHHhcC-
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLREN-----RNNFDLVISDVYMPDMDGFKLLELVGLE- 94 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~-----~~~pDLVIlDi~MPdmdGleLLe~Lr~~- 94 (524)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.+. ...||+||+|+.||+++|+++++.++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999988 899999999999999751 0359999999999999999999999754
Q ss_pred --CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 95 --MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 95 --~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+.+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999987653
No 53
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.81 E-value=3.1e-19 Score=161.12 Aligned_cols=119 Identities=24% Similarity=0.368 Sum_probs=110.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
+++||||||++..+..++.+|+..||+|+ .+.++.+|++.+.+....|||||+|+.||+++|+++++.++ ..+.+|||
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii 115 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVI 115 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEE
Confidence 47999999999999999999999999998 99999999999987621389999999999999999999886 46789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
++|+..+.+...+++++||++||.||++.++|..+|+.+++
T Consensus 116 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 116 MISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988754
No 54
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=3.3e-19 Score=157.36 Aligned_cols=118 Identities=24% Similarity=0.470 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999988999999999999999998765 999999999999999999999964 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988654
No 55
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.81 E-value=4.3e-19 Score=157.12 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=112.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 3589999999999999999999999999999999999999998765 999999999999999999999975 57899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
||++|+..+.....++++.||++||.||++.++|..+++.++++.+
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654
No 56
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.81 E-value=5.5e-19 Score=154.09 Aligned_cols=118 Identities=27% Similarity=0.500 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
.+||||||++..+..++.+|+..||+|..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 68999999999999999999999999999999999999988764 999999999999999999999964 478999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 82 TAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp ECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999888899999999999999999999999999988764
No 57
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.81 E-value=9.5e-20 Score=156.79 Aligned_cols=118 Identities=26% Similarity=0.397 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPVI 100 (524)
++||||||++..+..++.+|+..||+|..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +++|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 6899999999999999999999999999999999999988654 49999999999999999999999753 689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
++|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
No 58
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.80 E-value=6.2e-19 Score=155.27 Aligned_cols=119 Identities=29% Similarity=0.411 Sum_probs=106.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPV 99 (524)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 368999999999999999999999999999999999999998754 9999999999999999999999643 57999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+......++..|+++||.||++.++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999887666666667788999999999999999999988654
No 59
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.80 E-value=2.2e-19 Score=159.10 Aligned_cols=122 Identities=16% Similarity=0.273 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPV 99 (524)
.+.+||||||++..+..++.+|+..| |+|..+.++.+++..+.+....|||||+|+.||+++|+++++.++ ..+.+||
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 98 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTC 98 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcE
Confidence 46899999999999999999999988 999999999988887654202499999999999999999999885 4678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+.+...++++.||++||.||++.++|..+|+.++++.
T Consensus 99 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 99 LLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998864
No 60
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=8.1e-19 Score=154.40 Aligned_cols=122 Identities=20% Similarity=0.323 Sum_probs=111.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC--------CCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENR--------NNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~--------~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 47899999999999999999999988 8999999999999998510 3599999999999999999999997
Q ss_pred cC---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 93 LE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 93 ~~---~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
.. +.+|||++|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 54 68999999999999999999999999999999999999999999987653
No 61
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.80 E-value=3.3e-20 Score=162.59 Aligned_cols=120 Identities=18% Similarity=0.097 Sum_probs=109.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCc
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLP 98 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diP 98 (524)
...++||||||++..+..++.+|+..| |+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+++|
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 89 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALWATVP 89 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGGTTCC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhCCCCc
Confidence 345799999999999999999999999 9999999999999988654 4999999999999999999999864 46899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
||++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 90 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 90 LIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999987654
No 62
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.80 E-value=4.7e-19 Score=175.17 Aligned_cols=122 Identities=28% Similarity=0.410 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diP 98 (524)
..++||||||++..+..+...|+..+|.|..+.++.+|++.+.+. ..||+||+|+.||++||+++++.++.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 358999999999999999999999999999999999999999764 248999999999999999999999642 3689
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
||++|+..+.....+++++||++||.||++.++|..++++++++..
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999987653
No 63
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.80 E-value=9.7e-19 Score=152.94 Aligned_cols=121 Identities=22% Similarity=0.344 Sum_probs=112.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhcCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLLe~Lr~~~diPV 99 (524)
.+++||||||++..+..++.+|+..||+|. .+.++.+|++.+.+.. ||+||+|+.|| +++|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 458999999999999999999999999999 5999999999998765 99999999999 7999999998864488999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988654
No 64
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.80 E-value=1.4e-18 Score=155.24 Aligned_cols=125 Identities=23% Similarity=0.325 Sum_probs=111.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMD 96 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~d 96 (524)
.+.+.+||||||++..+..++.+|+..|+. |..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++ ..+.
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYELP 89 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCS
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 446789999999999999999999988854 448999999999998765 99999999999999999999886 4678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccCC
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVD 146 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~~ 146 (524)
+|||++|+..+.....++++.||++||.||++.++|..+++.++++....
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 99999999999999999999999999999999999999999999876543
No 65
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.80 E-value=6.6e-19 Score=165.83 Aligned_cols=119 Identities=30% Similarity=0.436 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
.++||||||++..+..++.+|+..||+|+ .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.....|||+
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~ 90 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPIVV 90 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEE
Confidence 37999999999999999999999999998 8999999999998765 99999999999999999999997655579999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 66
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.80 E-value=1.3e-18 Score=150.90 Aligned_cols=119 Identities=22% Similarity=0.391 Sum_probs=103.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCC---CCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM---DLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~---diP 98 (524)
.+++||||||++..+..++.+|++.||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++... ..+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 4589999999999999999999999999999999999999998764 99999999999999999999997543 455
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
||+++...+. ...++++.||++||.||++.++|..+|+++....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 6666665554 7889999999999999999999999999987654
No 67
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.80 E-value=7.1e-19 Score=154.77 Aligned_cols=120 Identities=27% Similarity=0.456 Sum_probs=110.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+. .||+||+|+ ||+++|+++++.++ ..+++|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 457999999999999999999999999999999999999999765 499999999 99999999999885 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999987654
No 68
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.80 E-value=2.7e-19 Score=157.41 Aligned_cols=120 Identities=23% Similarity=0.333 Sum_probs=101.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPV 99 (524)
+++||||||++..+..++.+|+.. |.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 478999999999999999999887 99999999999999998765 9999999999999999999999754 78999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
|++|+..+.+...++++.||++||.||++.++|..+++.++++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999887543
No 69
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.79 E-value=1.4e-18 Score=155.39 Aligned_cols=121 Identities=26% Similarity=0.472 Sum_probs=111.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.+++||||||++..+..++.+|+. +|+|..+.++.+|++.+.+.. .||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 458999999999999999999976 999999999999999998753 369999999999999999999886 46889999
Q ss_pred EEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~G-A~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|+..+.....++++.| |++||.||++.++|..+|+.++++..
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999987653
No 70
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.79 E-value=4.1e-19 Score=156.02 Aligned_cols=121 Identities=22% Similarity=0.366 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 4589999999999999999999999999999999999999998654 999999999999999999999964 57899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
||++|+..+.....++++.||++||.||++.++|..+++.++++.+
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 9999999988888899999999999999999999999999987654
No 71
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.79 E-value=2e-18 Score=150.96 Aligned_cols=120 Identities=27% Similarity=0.444 Sum_probs=110.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHh-cCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVG-LEMD 96 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLLe~Lr-~~~d 96 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.|| +++|+++++.++ ..+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999999999999999999999998764 99999999999 999999999885 4678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|||++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987654
No 72
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.79 E-value=5.1e-19 Score=184.64 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=111.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
.+||||||++.++..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.++ ..+++|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 37999999999999999999999999999999999999998765 99999999999999999999886 4688999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++.+.+.+.++++.||++||.||++.++|..++++++....
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 73
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.79 E-value=1.6e-18 Score=164.65 Aligned_cols=120 Identities=34% Similarity=0.564 Sum_probs=112.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIv 101 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+++|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 379999999999999999999999999999999999999998754 999999999999999999999964 57899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988754
No 74
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.79 E-value=8.8e-19 Score=148.68 Aligned_cols=113 Identities=28% Similarity=0.488 Sum_probs=103.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
++||||||++..+..++..|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999999999999999999999998754 99999999999999999999886 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
|+..+.. .++++.||++||.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987655 67889999999999999999999998764
No 75
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.79 E-value=1.6e-18 Score=151.64 Aligned_cols=119 Identities=21% Similarity=0.368 Sum_probs=105.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CC----C
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EM----D 96 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~----d 96 (524)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+... +|+||+|+.||+++|+++++.++. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 358999999999999999999999999999999999999987532 499999999999999999998862 22 3
Q ss_pred C-cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 97 L-PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 97 i-PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
. +||++|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 3 5888999999999999999999999999999999999999987653
No 76
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.78 E-value=2.9e-18 Score=153.49 Aligned_cols=120 Identities=28% Similarity=0.463 Sum_probs=111.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 3589999999999999999999999999999999999999997654 99999999999999999999886 45789999
Q ss_pred EEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~G-A~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
++|+..+.....++++.| |++||.||++.++|..+++.++++.
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999999999998764
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=1.2e-18 Score=171.36 Aligned_cols=120 Identities=30% Similarity=0.475 Sum_probs=111.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVI 100 (524)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||++||+++++.++. .+++|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4689999999999999999999999999999999999999998764 999999999999999999999864 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887653
No 78
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.78 E-value=9.6e-19 Score=155.16 Aligned_cols=118 Identities=25% Similarity=0.440 Sum_probs=101.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHH--hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcE
Q 009824 24 MRVLAVDDDQTCLKILEKFLR--ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~--~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPV 99 (524)
++||||||++..+..++..|+ ..+|.++ .+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 689999999999999999997 3688888 899999999998754 499999999999999999999886 4678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999887653
No 79
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.78 E-value=2.8e-18 Score=153.68 Aligned_cols=120 Identities=28% Similarity=0.481 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 57999999999999999999999999999999999999988754 499999999999999999999885 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+..+.....++++.||++||.||++.++|..+++.++++.+
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987643
No 80
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.78 E-value=5e-18 Score=149.23 Aligned_cols=121 Identities=19% Similarity=0.288 Sum_probs=108.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc----CCCceEEEEeCCCCCCCHHHHHHHHhcC-
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLREN----RNNFDLVISDVYMPDMDGFKLLELVGLE- 94 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~----~~~pDLVIlDi~MPdmdGleLLe~Lr~~- 94 (524)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.+++. ...||+||+|+.||+++|+++++.++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 357899999999999999999999888 899999999999999851 1359999999999999999999999754
Q ss_pred --CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 95 --MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 95 --~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+.+|||++|+..+.+...++++.||++||.||++.++|..++......
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999987765543
No 81
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.78 E-value=3.8e-18 Score=152.53 Aligned_cols=120 Identities=18% Similarity=0.334 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPV 99 (524)
+++||||||++..+..++.+|+. .||.++ .+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 57999999999999999999998 799998 8999999999998654 99999999999999999999886 4578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999887654
No 82
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.77 E-value=6.4e-18 Score=148.68 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=106.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
.+||||||++..+..++.+|+.. |+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 47999999999999999999875 99999999999999998754 99999999999999999999886 4578999999
Q ss_pred ecCCCHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINH-GACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~-GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.....+++.. ||++||.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999998888899876 59999999999999999999988754
No 83
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.77 E-value=3.7e-18 Score=145.90 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhc---CCCCcE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGL---EMDLPV 99 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLLe~Lr~---~~diPV 99 (524)
++||||||++..+..++..|+..||+|..+.++.+|++.+.+.. ||+||+|+.|| +++|+++++.++. .+++||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999999999999999999999998765 99999999999 9999999999975 478999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|++ +..+.....++++.||++|+.||++.++|..+++++++.
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 999 888888999999999999999999999999999988753
No 84
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.77 E-value=2.1e-18 Score=164.65 Aligned_cols=118 Identities=29% Similarity=0.428 Sum_probs=111.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+++|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 68999999999999999999999999999999999999998765 9999999999999999999999766889999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998764
No 85
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.77 E-value=1.4e-18 Score=180.87 Aligned_cols=119 Identities=25% Similarity=0.520 Sum_probs=107.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. |||||+|++||++||+++++.++ ..+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 479999999999999999999999999999999999999998764 99999999999999999999996 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~-~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.+.+.++++.||++||.||+ ..++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6888988888887643
No 86
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.77 E-value=2.6e-18 Score=164.11 Aligned_cols=120 Identities=37% Similarity=0.537 Sum_probs=112.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIv 101 (524)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+++|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998754 999999999999999999999964 57899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999998888999999999999999999999999999988754
No 87
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.77 E-value=2.5e-18 Score=165.99 Aligned_cols=118 Identities=35% Similarity=0.571 Sum_probs=111.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEe
Confidence 68999999999999999999999999999999999999998764 9999999999999999999999876799999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 104 a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999989999999999999999999999999999988764
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.76 E-value=5.1e-18 Score=178.01 Aligned_cols=118 Identities=28% Similarity=0.534 Sum_probs=110.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
|+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||++||+++++.++ ..+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998754 99999999999999999999986 4678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++.+.+.+.++++.||+|||.||++.++|..+++++++..
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
No 89
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.76 E-value=6e-18 Score=178.91 Aligned_cols=118 Identities=32% Similarity=0.470 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diPVI 100 (524)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.... |||||+|+.||++||+++++.++. .+++|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999975 3579999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
++|+..+.+...++++.||++||.||++.++|..+++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754
No 90
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.76 E-value=4.7e-18 Score=151.80 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=100.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QY-EVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy-~V~~a~sg~eALe~L~e-~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diP 98 (524)
.++||||||++..+..++.+|+.. || .|..+.++.+|++.+.+ . .||+||+|+.||+++|+++++.++ ..+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADN--TVDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTC--CCSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccC--CCCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 88 67799999999999986 4 499999999999999999999886 457899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccCC
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVD 146 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~~ 146 (524)
||++|+..+.....++++.||++||.||++.++|..+++.++++....
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 999999999999999999999999999999999999999998876543
No 91
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.75 E-value=5.4e-18 Score=149.33 Aligned_cols=117 Identities=21% Similarity=0.388 Sum_probs=101.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc------CCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL------EMDL 97 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~------~~di 97 (524)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~ 88 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRA 88 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCce
Confidence 68999999999999999999988999999999999999998754 999999999999999999998864 3688
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhccC
Q 009824 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (524)
Q Consensus 98 PVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~~ 145 (524)
|||++|+........ ++||++||.||++.++|..+++.++.+...
T Consensus 89 ~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 133 (140)
T 3c97_A 89 SIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAE 133 (140)
T ss_dssp CCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred EEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCC
Confidence 999999876544332 789999999999999999999998876543
No 92
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.75 E-value=3.2e-18 Score=151.64 Aligned_cols=117 Identities=24% Similarity=0.314 Sum_probs=96.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCC
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~d 96 (524)
..+...+||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.+.. .||+||+|+.||+++|+++++.++....
T Consensus 9 ~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~~ 87 (145)
T 3kyj_B 9 HHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKTR 87 (145)
T ss_dssp --CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHCC
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3445689999999999999999999987 89875 8999999999998751 4999999999999999999999976556
Q ss_pred CcEEEEec--CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 009824 97 LPVVMLSA--YSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (524)
Q Consensus 97 iPVIvlTa--~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI 136 (524)
+|||++++ ..+.+.+.++++.||++||.||++.++|...+
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 99999998 66677788999999999999999966554443
No 93
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.75 E-value=2.6e-17 Score=142.45 Aligned_cols=119 Identities=20% Similarity=0.377 Sum_probs=107.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHh-cCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~Lr-~~~diPVI 100 (524)
+++||||||++..+..++..|+..||+|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.++ ..+.+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 47999999999999999999999999999999999999999864 14999999999998 99999999886 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|+..+.....++++.| +||.||++.++|..+++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 84 YISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 999999988888887776 899999999999999999988654
No 94
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.75 E-value=2.3e-17 Score=144.48 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=106.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCC-CCcE
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM-DLPV 99 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~-diPV 99 (524)
..+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+|| ||+++|+++++.++..+ .+||
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~i 89 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVV 89 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCccE
Confidence 45689999999999999999999999999999999999999998754 99999 99999999999886447 8999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~-~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+.+...++++.||++||.||+ +.++|..+++.++++.
T Consensus 90 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 90 LVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999 9999999999887653
No 95
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.75 E-value=3.4e-17 Score=144.12 Aligned_cols=118 Identities=23% Similarity=0.398 Sum_probs=104.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-CCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~diPV 99 (524)
.++||||||++..+..++.+|+.. +|.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCceE
Confidence 589999999999999999999875 89855 8999999999998754 9999999999999999999999754 45678
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|++|+..+ ...++++.||++||.||++.++|..++++++++.+
T Consensus 87 i~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 87 VFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp EEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99998754 57789999999999999999999999999887643
No 96
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.74 E-value=2.2e-17 Score=150.52 Aligned_cols=119 Identities=23% Similarity=0.402 Sum_probs=101.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQ-YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~g-y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
..++||||||++..+..++.+|+..+ +.++ .+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++....+||
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~i 101 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTRV 101 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCEE
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCceE
Confidence 35799999999999999999999874 4444 7899999999998765 999999999999999999999975444999
Q ss_pred EEEecCCCHH--HHHHHHhcCCcEEEeCCCC---------HHHHHHHHHHHHHh
Q 009824 100 VMLSAYSDTK--LVMKGINHGACDYLLKPVR---------MEELKNTWQHVIRR 142 (524)
Q Consensus 100 IvlTa~~d~~--~~~~al~~GA~dYL~KP~~---------~eeL~~aI~~vlr~ 142 (524)
|++|+..+.. .+.++++.||++||.||++ .++|..+++.++.+
T Consensus 102 i~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 102 IMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp EEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred EEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 9999977754 6779999999999999999 57777777766554
No 97
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.74 E-value=9.6e-18 Score=140.72 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=103.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPVI 100 (524)
++||||||++..+..++.+|+..||+|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 68999999999999999999999999999999999999998765 9999999999999999999999654 689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
++|+..+.. ++++.|+++|+.||++.++|..+++.++
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 999988766 8899999999999999999999887654
No 98
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.74 E-value=4.4e-18 Score=147.56 Aligned_cols=119 Identities=21% Similarity=0.326 Sum_probs=106.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIv 101 (524)
+++||||||++..+..++.+|+..++.|..+.++.++++.+.. . ||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999987653 3 99999999999999999999886 457899999
Q ss_pred EecCCCH-----HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 102 LSAYSDT-----KLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 102 lTa~~d~-----~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
+|+..+. +...++++.||++||.||++.++|..+++++..+..
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 9999885 667788899999999999999999999999876543
No 99
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.74 E-value=1.2e-17 Score=170.16 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=107.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH-hCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---CCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLR-ECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~-~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~~diP 98 (524)
.++||||||++..+..++.+|+ ..||+|..+.++.+|++.+.... ||+||+|+.||++||+++++.++. .+++|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 3679999999999999999996 46899999999999999998765 999999999999999999999975 35799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
||++|+..+...+.++++.||++||.||++.++|..++..+++
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987754
No 100
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.73 E-value=2e-17 Score=157.14 Aligned_cols=116 Identities=28% Similarity=0.437 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvl 102 (524)
++||||||++..+..++.+|+..| .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.++. .+++|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 689999999999999999999888 888999999999876 2 4999999999999999999999864 489999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 119 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999998753
No 101
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.72 E-value=1.1e-17 Score=156.37 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=103.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-CCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~diPVIv 101 (524)
+++||||||++..+..++.+|+..||.|+.+.++.+|+ . ..||+||+|+.||+++|+ +++.++.. +++|||+
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~ 84 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVA 84 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEE
Confidence 57999999999999999999998999999888877765 2 259999999999999999 88888765 8999999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
+|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654
No 102
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.71 E-value=5.2e-17 Score=154.53 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCC-CCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM-DLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~-diPVIvl 102 (524)
|+||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+|| ||+++|+++++.++..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 5899999999999999999999999999999999999998765 499999 99999999999886446 8999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~-~~eeL~~aI~~vlr~~ 143 (524)
|+..+.+...++++.||++||.||+ +.++|..+++.++++.
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999 9999999999998764
No 103
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.71 E-value=3.4e-17 Score=171.55 Aligned_cols=121 Identities=18% Similarity=0.249 Sum_probs=106.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVI 100 (524)
+++||||||++..+..++.+|+. .+|+|..+.++.+|++.+... ..|||||+|++||+|||+++++.++. .+.++||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 37999999999999999999998 588999999999999999863 24999999999999999999998864 4566777
Q ss_pred EEecCCCH-----HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 009824 101 MLSAYSDT-----KLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (524)
Q Consensus 101 vlTa~~d~-----~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~~ 144 (524)
++|+..+. ..+.++++.||++||.||++.++|..++++++++..
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 77777776 677889999999999999999999999999987654
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.70 E-value=2.7e-17 Score=144.21 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=101.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDMDGFKLLELVGL-EMDL 97 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e-~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~di 97 (524)
.+.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++. .+.+
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~~~~ 89 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQTKQP 89 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSSSCC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCC
Confidence 4467899999999999999999999999999999999999999876 54 999999999999999999999964 5689
Q ss_pred cEEEEe-cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLS-AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlT-a~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|||++| +..+... .+++ |++||.||++.++|..+++.++++
T Consensus 90 ~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 90 SVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 999999 8877665 5665 999999999999999999887654
No 105
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.70 E-value=6.3e-19 Score=150.40 Aligned_cols=118 Identities=31% Similarity=0.423 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvl 102 (524)
.+||||||++..+..++..|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 5799999999999999999998899999999999999988654 499999999999999999999885 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|+..+.+...++++.||++|+.||++.++|..+++.+++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99998888899999999999999999999999999988754
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.65 E-value=1.1e-15 Score=158.35 Aligned_cols=118 Identities=26% Similarity=0.440 Sum_probs=104.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
+++||||||++..+..++.+|+.. +|++ ..+.++.+|++.+.+.. ||+||+|+.||++||+++++.++....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999985 8995 58999999999998765 9999999999999999999999755459999
Q ss_pred EEecCCCH--HHHHHHHhcCCcEEEeCCCCH---------HHHHHHHHHHHHh
Q 009824 101 MLSAYSDT--KLVMKGINHGACDYLLKPVRM---------EELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~--~~~~~al~~GA~dYL~KP~~~---------eeL~~aI~~vlr~ 142 (524)
++|+..+. +...++++.||+|||.||++. ++|..+++.+.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99998876 458899999999999999983 7788888887654
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.64 E-value=3e-16 Score=155.06 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=86.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
+.+||||||++..+..|...|+. .+|.|..+ ++.+++..+.. ..||+||+|++||++||+++++.++.. .+|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLER-GLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEE
Confidence 36899999999999999999976 47777544 55555555433 359999999999999999999999753 699999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPVRM 129 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~~~ 129 (524)
+|+..+.+...+++++||+|||.||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999643
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.59 E-value=1.6e-15 Score=171.93 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=108.7
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 009824 24 MRVLAVDDDQ-TC-------LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD----MDGFKLLELV 91 (524)
Q Consensus 24 irVLIVDDdp-~~-------~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd----mdGleLLe~L 91 (524)
|+||||||++ .. ++.|+..|++.||+|..+.++++|++.+... ..+|+||+|++||+ +||+++++.|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5899999999 88 9999999999999999999999999998754 24999999999999 9999999999
Q ss_pred hc-CCCCcEEEEecCCC-HHHHHHHHhcCCcEEEeCCCCHHH-HHHHHHHHHHhc
Q 009824 92 GL-EMDLPVVMLSAYSD-TKLVMKGINHGACDYLLKPVRMEE-LKNTWQHVIRRK 143 (524)
Q Consensus 92 r~-~~diPVIvlTa~~d-~~~~~~al~~GA~dYL~KP~~~ee-L~~aI~~vlr~~ 143 (524)
|. .+++||||+|+..+ .+....++..||+||+.||++..| |..+|+++++++
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 64 46899999999887 777888999999999999999999 888999998875
No 109
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.21 E-value=1.3e-11 Score=97.40 Aligned_cols=54 Identities=67% Similarity=1.025 Sum_probs=49.2
Q ss_pred cCCCCceEeeHHHHHHHHHHHHHcCCCCCchHHHHhhcCCCCCCHHhHHhhhhh
Q 009824 188 TQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVKFRLSL 241 (524)
Q Consensus 188 ~~kk~rvvw~veLh~kflaavn~LGl~~avPk~IL~lmk~~~LT~eevk~rL~m 241 (524)
+.+++|+.|+.+||.+|+.|+++||.++++|+.||++|++++||.++|+.++++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999555533
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.99 E-value=3.7e-10 Score=107.19 Aligned_cols=92 Identities=21% Similarity=0.366 Sum_probs=77.5
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC-
Q 009824 49 EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP- 126 (524)
Q Consensus 49 ~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP- 126 (524)
.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++ ..+..++++++.....+...++++.||++|+.||
T Consensus 7 ~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~ 84 (237)
T 3cwo_X 7 IVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTA 84 (237)
T ss_dssp EEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHH
T ss_pred EEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCc
Confidence 4445788999999988765 99999999999999999999886 3456677777777778899999999999999999
Q ss_pred -CCHHHHHHHHHHHHHh
Q 009824 127 -VRMEELKNTWQHVIRR 142 (524)
Q Consensus 127 -~~~eeL~~aI~~vlr~ 142 (524)
++..++...+...+..
T Consensus 85 ~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 85 AVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHCTHHHHHHHHHHTG
T ss_pred ccChHHHHHHHHHHhCC
Confidence 7888888888776653
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.98 E-value=8.1e-09 Score=108.83 Aligned_cols=117 Identities=26% Similarity=0.340 Sum_probs=99.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC---CCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~---~diPV 99 (524)
..+|++|||+...+..+...|.. .+.+....+..+++. .... .||+|++|+.||+|+|+++++.++.. ..+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 46899999999988888888865 467777888888763 3333 48999999999999999999988643 47899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
|++|+..+.....++++.|++||+.||+..+++...+..+++..
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887776543
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.33 E-value=0.0003 Score=68.38 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=72.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
..+.+||||||++..+..|+.+|+..|++|..+.+ .....+|++|+|+.||+..+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 45789999999999999999999999999987764 112459999999999976442 1256
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.++...... ....+...++.||+...++...+.++..
T Consensus 69 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 666543210 1133556899999999888888877654
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.09 E-value=0.00053 Score=77.30 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHH
Q 009824 35 CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa~~d~~~~~~ 113 (524)
..+.|...|++.||+|+.+.+.++|+..++++ ..+++||+|+.|+ +.++++.|+ ...++||++++.......+..
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 34556688888899999999999999999876 4799999999986 788999885 678999999998854332221
Q ss_pred HHhcCCcEEEeCCCC-HHHHHHHHHHHHHhc
Q 009824 114 GINHGACDYLLKPVR-MEELKNTWQHVIRRK 143 (524)
Q Consensus 114 al~~GA~dYL~KP~~-~eeL~~aI~~vlr~~ 143 (524)
..-.++++|+.+..+ .+.+...|.++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 123578899998864 444545665555443
No 114
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=96.68 E-value=0.00039 Score=71.09 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=43.6
Q ss_pred CchHHHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHH-hhcCCCchhhhhhhhhccCCCcccCCCC
Q 009824 216 AVPKKILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVA-SVGSKDSSYLRIGALDGFGGSHSVNSPG 283 (524)
Q Consensus 216 avPk~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~-~L~~sd~~ll~~aa~igl~hhe~~dGsG 283 (524)
.+|++|+ .|++.||.+| +++ +++|+. .|+. ++... ++......+.+.|||+|||+|
T Consensus 209 ~ip~~il--~k~~~L~~~E--~~~-~~~H~~-----~G~~~ll~~~--~~~~~v~~~i~~HHEr~dGsG 265 (328)
T 3tm8_A 209 HSPLNLN--QPLDSMSPED--LAL-WKKHPI-----EGAQKVQDKK--HFDQTVINIIGQHEETINGTG 265 (328)
T ss_dssp TCSCCCS--SCGGGSCHHH--HHH-HHHHHH-----HHHHHHTTCT--TSCHHHHHHHHHTTCCTBSCS
T ss_pred cCCHHHH--hCCCCCCHHH--HHH-HHHHHH-----HHHHHHHHhC--CCcHHHHHHHHHhcCCCCCCC
Confidence 6788888 7889999999 777 788887 6666 44433 344666778899999999999
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.99 E-value=0.043 Score=51.13 Aligned_cols=82 Identities=12% Similarity=0.225 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC-CCCCCCHH--HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEE------eC
Q 009824 55 RAITALKMLRENRNNFDLVISDV-YMPDMDGF--KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL------LK 125 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi-~MPdmdGl--eLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL------~K 125 (524)
+..+.++.+... ...++++.++ .++.++|+ ++++.++...++|||.+++....+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 455666666544 2356999997 66667774 46677766678999999999999999999999999996 57
Q ss_pred CCCHHHHHHHHH
Q 009824 126 PVRMEELKNTWQ 137 (524)
Q Consensus 126 P~~~eeL~~aI~ 137 (524)
|++..+++..++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 888888876543
No 116
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.95 E-value=0.038 Score=47.23 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=79.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC-CCCCHHHHHHHHh---cCCCCcE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM-PDMDGFKLLELVG---LEMDLPV 99 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~M-PdmdGleLLe~Lr---~~~diPV 99 (524)
-.||+|-.|-..-..+++++....|+++...... ....-|+|+|.+.+ |. .+. .....-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~--------~e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK--------QELSADLVVCEYSLLPR--------EIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC--------CCTTEEEEEEEGGGSCT--------TCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccC--------CcccceeEEEeeecChH--------HhcCCCCCCcccE
Confidence 4588898888888889999977889988765321 11347999999854 32 121 1233458
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
|++-..-+.+...+.+..||. ||..|+.+.-+..+|++.++.
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 888888899999999999999 999999999999999988874
No 117
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.12 E-value=0.37 Score=43.96 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=81.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhc
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL 93 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLLe~Lr~ 93 (524)
..+|++. |-|..-...+..+|+..||+|+. ....++.++.+.+.+ +|+|.+-..|.. +. --++++.++.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4678888 88888899999999999999984 346788888887764 999998877653 22 2335556654
Q ss_pred C--CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 94 E--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 94 ~--~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
. .+++|++ .+..-.+....+.+.|++.++..--+..+....++.++..
T Consensus 96 ~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 96 LGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp TTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 3 3677654 4555444454566899998665545556666666666544
No 118
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=93.34 E-value=0.49 Score=45.76 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=69.4
Q ss_pred cEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHHh
Q 009824 24 MRVLAVDD----DQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY------MPDMDGFKLLELVG 92 (524)
Q Consensus 24 irVLIVDD----dp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~------MPdmdGleLLe~Lr 92 (524)
..++++|- +|.....+.+.+++.|..+. .+.+.+++.++.+. .+|+|.+-.. .+...++++++.++
T Consensus 102 ad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~ 178 (229)
T 3q58_A 102 ADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQLS 178 (229)
T ss_dssp CSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHHH
T ss_pred CCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHHH
Confidence 44555553 34344444455566677765 66788888877653 3898864322 23345788898886
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.. ++|||.-.+-.+.+.+.+++++||+++++=
T Consensus 179 ~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 179 HA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp TT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 55 899999999999999999999999999873
No 119
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=92.53 E-value=1.7 Score=43.06 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=67.8
Q ss_pred HHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHhcCCCCcEEEEecCCCHHHH
Q 009824 39 LEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAYSDTKLV 111 (524)
Q Consensus 39 L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLLe~Lr~~~diPVIvlTa~~d~~~~ 111 (524)
..+.|.+.||.|. ++.+...|.++. +. .+++| ..+-.|- ..-+++++.++...++|||+=.+-..++.+
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~-~~--G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDA 202 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLA-EI--GCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDA 202 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHH-HS--CCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHH-Hh--CCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 3444556699987 445666665554 33 37777 4444431 223788888877789999998899999999
Q ss_pred HHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHH
Q 009824 112 MKGINHGACDYLLK-----PVRMEELKNTWQHVIR 141 (524)
Q Consensus 112 ~~al~~GA~dYL~K-----P~~~eeL~~aI~~vlr 141 (524)
..+++.||++.++= --++..+..++..++.
T Consensus 203 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 203 AIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999863 3345555555555443
No 120
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=91.98 E-value=0.87 Score=44.00 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=68.0
Q ss_pred cEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHHh
Q 009824 24 MRVLAVDD----DQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY------MPDMDGFKLLELVG 92 (524)
Q Consensus 24 irVLIVDD----dp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~------MPdmdGleLLe~Lr 92 (524)
..++++|- +|.....+.+.+++.|..+. .+.+.+++.++... .+|+|.+-.. .+...++++++.++
T Consensus 102 ad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~ 178 (232)
T 3igs_A 102 AAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKALH 178 (232)
T ss_dssp CSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHHH
T ss_pred CCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHHH
Confidence 44555543 34344444455566677765 66788888777653 3898864321 12345688888886
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.. ++|||.-.+-.+.+.+.+++++||+++++
T Consensus 179 ~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 179 DA-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HT-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 55 89999999999999999999999999986
No 121
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=90.06 E-value=4.7 Score=39.29 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=75.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhc
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGL 93 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLLe~Lr~ 93 (524)
+-+||++ |-|..-..++..+|+..||+|+. -...++.++.+.+.+ ||+|.+-..|+. +..+ ++++.++.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4577777 77788888999999999999873 345677778877665 999999887763 5544 46677753
Q ss_pred -CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 94 -EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 94 -~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
.+++||++--.....+.. -+.||+.|.... .+....++.++
T Consensus 201 ~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred cCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 456787766555554432 367987776533 44445555544
No 122
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=89.29 E-value=7.6 Score=34.06 Aligned_cols=107 Identities=11% Similarity=-0.009 Sum_probs=71.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhc-CC-CCcEEEE
Q 009824 30 DDDQTCLKILEKFLRECQYEVT---VTNRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL-EM-DLPVVML 102 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLLe~Lr~-~~-diPVIvl 102 (524)
|-|..-...+..+|+..||+|+ .....++.++.+.+.+ +|+|.+-..|.. +. --++++.++. .. +++|+ +
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~-v 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY-V 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEE-E
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEE-E
Confidence 4556666788899999999998 3467888888888765 999998887743 22 2234555543 22 56664 4
Q ss_pred ecCC-----CHH-HHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 103 SAYS-----DTK-LVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 103 Ta~~-----d~~-~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
.+.. +.. ....+.+.|++.|...--+..++...+...
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 4432 222 244567899998887667777776666543
No 123
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=87.96 E-value=2.2 Score=40.00 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=68.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhc
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGL 93 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLLe~Lr~ 93 (524)
+-+|+++ |-|..-...+..+|+..||+|... ...++.++.+++.+ ||+|.+-..|+. +..+ ++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 3478887 778888899999999999999854 24677777777665 999999887763 3333 35566653
Q ss_pred C---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 94 E---MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 94 ~---~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
. +++||++--...+.+.. .+.||+.|..-
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~d 197 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPD 197 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECC
Confidence 2 35887766555554433 45699887653
No 124
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.08 E-value=5.8 Score=40.39 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=74.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE---CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~---~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
.++|+.|+|.|+...+.|..+|.. ..|+|..+++.+.+.+.+++.+ +|++|+|-.++... .......+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-------~~~~~~~~ 90 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-------SEFKRNCG 90 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-------GGGCSSCE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-------hhhcccCc
Confidence 358999999999999999999964 3678999999999999988764 99999998775421 11223456
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
+++++.....+ ...-...+.|--+.+++...+....
T Consensus 91 v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 91 LAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp EEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 77776543221 1122346788888888877665554
No 125
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=85.49 E-value=1.9 Score=41.15 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=68.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEE--eCCCC-CCCHH-HHHHHH
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVIS--DVYMP-DMDGF-KLLELV 91 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIl--Di~MP-dmdGl-eLLe~L 91 (524)
+-+|++. |-|..=..++..+|+..||+|+.. ...++.++.+.+.+ ||+|.+ -..|. .+..+ ++++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4577777 777888889999999999999854 35677778888765 999998 77774 34433 355666
Q ss_pred hcC-C--CCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 92 GLE-M--DLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 92 r~~-~--diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+.. . ++||++=-+.-..+.+ -+.||+.|-..
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~d 203 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAEN 203 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSS
T ss_pred HHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECC
Confidence 533 3 6787766555565433 35699988653
No 126
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=84.87 E-value=4.7 Score=39.97 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHHHHHhc-CCC-CcEEEEec
Q 009824 34 TCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPDMDG-----FKLLELVGL-EMD-LPVVMLSA 104 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdG-----leLLe~Lr~-~~d-iPVIvlTa 104 (524)
...+..+. |.+.||.|. +..+...|-++. +. .+++| ..+-.|-..| .++++.++. ..+ +|||+=.+
T Consensus 112 ~tv~aa~~-L~k~Gf~Vlpy~~~D~~~ak~l~-~~--G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GG 186 (268)
T 2htm_A 112 ETLKAAER-LIEEDFLVLPYMGPDLVLAKRLA-AL--GTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAG 186 (268)
T ss_dssp HHHHHHHH-HHHTTCEECCEECSCHHHHHHHH-HH--TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESC
T ss_pred HHHHHHHH-HHHCCCEEeeccCCCHHHHHHHH-hc--CCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCC
Confidence 33333333 445599977 445665554443 33 26766 4444432222 456777765 677 99999999
Q ss_pred CCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 009824 105 YSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIR 141 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr 141 (524)
-..++.+..+++.||++.++ |--++..+..++..++.
T Consensus 187 I~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 187 LGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp CCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999886 43345555555555443
No 127
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=84.83 E-value=9.2 Score=37.93 Aligned_cols=120 Identities=10% Similarity=0.075 Sum_probs=81.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hcCCCCc
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV-GLEMDLP 98 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L-r~~~diP 98 (524)
+...+.|.+.-.++.....+..+|....|.++.+.+.++.++.+++++..+|++|+... +..-..+...+ ....-.|
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP 83 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVP 83 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCcccc
Confidence 45568888999999999999999988899999999999999999988889999998761 22355566666 4556789
Q ss_pred EEEEecCCCHHHHHH---HHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMK---GINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~---al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+|++..... ..-.+ .+-+-..+.-...-..+++-..|.+++.+
T Consensus 84 ~vil~~~~~-~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~ 129 (289)
T 1r8j_A 84 AIVVGDRDS-EDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAE 129 (289)
T ss_dssp EEEESCCC-------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHH
T ss_pred EEEeccCcc-ccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHH
Confidence 998865422 00000 01111122223334456677777766654
No 128
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=84.75 E-value=12 Score=37.03 Aligned_cols=90 Identities=10% Similarity=-0.069 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh-cCC-CCcEEEEecCCC
Q 009824 33 QTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVG-LEM-DLPVVMLSAYSD 107 (524)
Q Consensus 33 p~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~Lr-~~~-diPVIvlTa~~d 107 (524)
+.....+....+..|..+. .+.+.+++..++.. .+|+|-+.-.-.. .-+++.++.+. ..+ ++|||..++-.+
T Consensus 148 ~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t 224 (272)
T 3qja_A 148 QSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRG 224 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCS
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCC
Confidence 3334444555566788765 67888887776653 3788777532111 11345555553 333 799999999999
Q ss_pred HHHHHHHHhcCCcEEEeC
Q 009824 108 TKLVMKGINHGACDYLLK 125 (524)
Q Consensus 108 ~~~~~~al~~GA~dYL~K 125 (524)
.+.+.++.++||+++++=
T Consensus 225 ~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 225 TADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999883
No 129
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=81.44 E-value=13 Score=38.34 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=66.8
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 009824 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (524)
Q Consensus 23 ~irVLIVD----Ddp~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (524)
+..+++|| +.+...+.++.+-+.. +..|. .+.+.++|.++.+.. .|.|.+.+. |+ ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCcccc
Confidence 45677776 3445555566655554 55654 478899998877643 788888421 22 23
Q ss_pred HHHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLLe~Lr---~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.++++..+. ...++|||.--+-.+...+.+++.+||+....
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 445554442 24579999998998999999999999998865
No 130
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=80.60 E-value=6.9 Score=36.64 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=52.9
Q ss_pred CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC
Q 009824 47 QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG 118 (524)
Q Consensus 47 gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~G 118 (524)
+..+- .+.+.+++.+.... ..|.|+++-..+. .-|++.++.++...++|||+..+- +.+.+.++++.|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 44443 56788887776543 3899999765432 236777877754458999988887 788899999999
Q ss_pred CcEEEe
Q 009824 119 ACDYLL 124 (524)
Q Consensus 119 A~dYL~ 124 (524)
|+.+..
T Consensus 186 a~gv~v 191 (221)
T 1yad_A 186 ADGIAV 191 (221)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998765
No 131
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=80.39 E-value=23 Score=35.24 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=58.9
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009824 41 KFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (524)
Q Consensus 41 ~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~ 112 (524)
+.+++.+..|. .+.+.+++..+... .+|.|+++-.-++ ...+++++.++...++|||+-.+-.+.+.+.
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~ 188 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLV 188 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 34444566665 46777877766543 3788888532221 2467788888766689999999998999999
Q ss_pred HHHhcCCcEEEe
Q 009824 113 KGINHGACDYLL 124 (524)
Q Consensus 113 ~al~~GA~dYL~ 124 (524)
+++..||+....
T Consensus 189 ~al~~GAdgV~v 200 (328)
T 2gjl_A 189 AALALGADAINM 200 (328)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998876
No 132
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=80.06 E-value=13 Score=34.19 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=50.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.+..++.+.... .+|.|+++-..|. ..+++.++.++...++||++..+-. .+.+.++++.||+.+..
T Consensus 114 ~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 46777777665432 3899998865553 3478888877654589998877776 77788889999999865
No 133
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=79.73 E-value=12 Score=39.20 Aligned_cols=99 Identities=11% Similarity=0.209 Sum_probs=65.5
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCC---------C--CCCCHH
Q 009824 23 GMRVLAVDD----DQTCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVY---------M--PDMDGF 85 (524)
Q Consensus 23 ~irVLIVDD----dp~~~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~---------M--PdmdGl 85 (524)
+..++++|- .....+.++.+-+..+..|. .+.+.++|..+++. ..|.|++.+. . .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 356777752 23344555554444466665 57888888877653 3898888321 0 012345
Q ss_pred HHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 86 KLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 86 eLLe~Lr---~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+++..+. ...++|||.-.+-.+...+.+++.+||+....
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 5555553 23579999999999999999999999998865
No 134
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=79.64 E-value=23 Score=32.47 Aligned_cols=110 Identities=11% Similarity=0.050 Sum_probs=65.1
Q ss_pred EEEEEeCCH--HHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHH
Q 009824 25 RVLAVDDDQ--TCLKILEKFLRECQYEVTVT----NRAITALKMLRENRNNFDLVISDVYMPDM-------DGFKLLELV 91 (524)
Q Consensus 25 rVLIVDDdp--~~~~~L~~~L~~~gy~V~~a----~sg~eALe~L~e~~~~pDLVIlDi~MPdm-------dGleLLe~L 91 (524)
..+++-+.+ .....+.+.+++.|..+... .+..+.++.+.+. ..|.|-++ |+. .+++.++.+
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~---~g~~g~~~~~~~~~~i~~l 153 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVH---TGTDQQAAGRKPIDDLITM 153 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEE---CCHHHHHTTCCSHHHHHHH
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEc---CCCcccccCCCCHHHHHHH
Confidence 344555544 33355555666667776532 3443433443333 27877766 332 356777777
Q ss_pred hcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHH
Q 009824 92 GLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVI 140 (524)
Q Consensus 92 r~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vl 140 (524)
+.. +++||++-.+-. .+.+.+++++||+.++. +.-++.+....+...+
T Consensus 154 ~~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~ 207 (211)
T 3f4w_A 154 LKVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVL 207 (211)
T ss_dssp HHHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHH
Confidence 644 578988776664 78888999999999876 4444444444444333
No 135
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=79.39 E-value=15 Score=36.17 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=76.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC----
Q 009824 23 GMRVLAV----DDDQTCLKILEKF--------LREC-QYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM---- 82 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~--------L~~~-gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdm---- 82 (524)
..+|++. |-|..=..++..+ |+.. ||+|+.. -..++.++.+.+.+ +|+|.+-..|...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccchH
Confidence 4566654 6777777778877 9999 9999743 36788888888765 9999999988752
Q ss_pred CHH-HHHHHHhcC---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 83 DGF-KLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 83 dGl-eLLe~Lr~~---~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+ ++++.++.. .+++||+=-+..+.+ .+.+.||+.|..--....++...+...+.
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 222 244555432 236665444444433 35678999988877777777776655443
No 136
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=78.76 E-value=12 Score=36.23 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=59.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcC--CCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLE--MDLPVVMLSAYSDTKLVMKGINHGACDY 122 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLLe~Lr~~--~diPVIvlTa~~d~~~~~~al~~GA~dY 122 (524)
.+.+.+|+.++... .+|.|.+.-..|. .-|++.++++... .++|||.+.+- +.+.+.+++++||+.+
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 67889988877653 4899998665443 2378888877654 48999999887 6777889999999998
Q ss_pred Ee-----CCCCHHHHHHHHHHH
Q 009824 123 LL-----KPVRMEELKNTWQHV 139 (524)
Q Consensus 123 L~-----KP~~~eeL~~aI~~v 139 (524)
.+ +.-++.+....+...
T Consensus 217 av~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 217 VVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp EESHHHHTCSSHHHHHHHHHHH
T ss_pred EEeHHHhCCCCHHHHHHHHHHH
Confidence 76 333444444444433
No 137
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=78.21 E-value=8 Score=42.94 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=76.8
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHH-
Q 009824 23 GMRVLAV----DDDQTCLKIL----EKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD----MDGFK- 86 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L----~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPd----mdGle- 86 (524)
..+|++. |-|..=...+ ..+|+..||+|+.. ...++.++.+.+.+ +|+|.+-..|.. +..+.
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 4678877 5555444433 57889899999843 46888888888765 999999988876 34443
Q ss_pred HHHHHhcC-C--CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 87 LLELVGLE-M--DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 87 LLe~Lr~~-~--diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+++.++.. . +++||+=-+..+.+. +.+.||+.|........++...|...++.
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 45566432 2 356555433444433 34789999988778887777766665544
No 138
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=77.52 E-value=3.7 Score=40.19 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=52.3
Q ss_pred CCeEE--EECCHHHHHHHHHhcCCCceEEEE-eCCCC---CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCc
Q 009824 47 QYEVT--VTNRAITALKMLRENRNNFDLVIS-DVYMP---DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC 120 (524)
Q Consensus 47 gy~V~--~a~sg~eALe~L~e~~~~pDLVIl-Di~MP---dmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~ 120 (524)
|+.+. ++.+.+++.++.+.. .|.|+. -..-. +..+.+++++++...++|||+..+-.+.+.+.+++++||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~g---ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEELG---VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHHT---CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHhC---CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 77665 445666665554432 566633 00001 1234778888876678999999999999999999999999
Q ss_pred EEEeC
Q 009824 121 DYLLK 125 (524)
Q Consensus 121 dYL~K 125 (524)
..++=
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98873
No 139
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=76.68 E-value=6.7 Score=37.28 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSD------TKLVMKGINHGACDYLLKPVRMEELKNTWQ 137 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d------~~~~~~al~~GA~dYL~KP~~~eeL~~aI~ 137 (524)
+++++.++...++||++++.... .+.+..++++||+..+.-....++....++
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 67778887667889998874332 467888899999999996565555444433
No 140
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=75.92 E-value=23 Score=31.28 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=71.6
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVTV-T--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp-~~~~~L~~~L~~~gy~V~~-a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
.++++|+.+.+ .....++.++++.+ .|.. . -+.++..+++. ..|++|+-... +.-|+.+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 57888887654 35667777777766 5554 3 34456666653 27888875443 334777888774 3578
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
||.. .. ....+.+ .|..+++..|-+.+++..++..++.
T Consensus 142 vI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7654 22 2344455 7888999999999999999998876
No 141
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=74.93 E-value=15 Score=37.59 Aligned_cols=97 Identities=11% Similarity=0.217 Sum_probs=63.3
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CCHH
Q 009824 24 MRVLAVD----DDQTCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MDGF 85 (524)
Q Consensus 24 irVLIVD----Ddp~~~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------mdGl 85 (524)
..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+-+. |+ ...+
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~-~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIG-PGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CCTTCCHHHHTCBCCCHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecC-CCcCCCcccccCCCCCcH
Confidence 4456654 333445566665555566665 56788888777653 3788887321 11 2234
Q ss_pred HHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 86 KLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 86 eLLe~Lr---~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.+..+. ...++|||.--+-.+...+.+++.+||+....
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4454442 22479999988888999999999999998875
No 142
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=74.05 E-value=31 Score=31.99 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=43.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEe
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISD 76 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlD 76 (524)
+-..+|+++-..+.....+++++.+.+.++. ...+.+++++..++....+|+||+-
T Consensus 2 ~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISR 58 (196)
T 2q5c_A 2 SLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISR 58 (196)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEE
T ss_pred CCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEEC
Confidence 3446899999999999999998887666765 4567888888776633468999873
No 143
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=73.93 E-value=27 Score=29.28 Aligned_cols=48 Identities=8% Similarity=0.276 Sum_probs=37.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCce
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFD 71 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pD 71 (524)
+-|++..-+...++..+.+++..||.|.++.+..+.-+.+++.-..+.
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkyn 50 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYN 50 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhC
Confidence 445666778888899999999999999999999988777765433343
No 144
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=73.37 E-value=26 Score=35.12 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=58.7
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009824 41 KFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (524)
Q Consensus 41 ~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~a 114 (524)
+.++..+..|. .+.+.+++..+.+. .+|.|+++-.-.+ ...++++..++...++|||+-.+-.+.+.+.++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 34445566665 46777887766543 3788888642222 246788877765558999999999999999999
Q ss_pred HhcCCcEEEe
Q 009824 115 INHGACDYLL 124 (524)
Q Consensus 115 l~~GA~dYL~ 124 (524)
+..||+...+
T Consensus 195 l~~GA~gV~v 204 (326)
T 3bo9_A 195 FALGAEAVQM 204 (326)
T ss_dssp HHHTCSEEEE
T ss_pred HHhCCCEEEe
Confidence 9999999876
No 145
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=72.27 E-value=31 Score=36.99 Aligned_cols=99 Identities=10% Similarity=0.134 Sum_probs=64.3
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----------CCH
Q 009824 23 GMRVLAVDD----DQTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD-----------MDG 84 (524)
Q Consensus 23 ~irVLIVDD----dp~~~~~L~~~L~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-----------mdG 84 (524)
+..+++||. ...+.+.++++-+..+ ..|. .+.+.++|..+.+.. .|.|++.+.--. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCCCc
Confidence 456777773 3344455555555543 4444 567788887776543 788887432111 223
Q ss_pred HHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~L---r~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
++++..+ ....++|||.--+-.+...+.+++.+||+..+.
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 4444333 233479999999999999999999999999876
No 146
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=71.30 E-value=16 Score=41.10 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=77.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhc-
Q 009824 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL- 93 (524)
Q Consensus 24 irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLLe~Lr~- 93 (524)
.+|++. |.|..-..++..+|+..||+|+.. ...++.++...+.. +|+|.+-..|.. +. .-++++.|+.
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~~ 674 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKL 674 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHhc
Confidence 566665 566666678888999999999853 35788888887764 998888776643 32 3345666653
Q ss_pred CC-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 94 EM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 94 ~~-diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.. ++ +|++-+..-......+.+.|++.|+..-.+..++...+...++.
T Consensus 675 G~~~i-~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 675 GRPDI-LITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TCTTS-EEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 23 44 44455433333344567899999998667777777766665543
No 147
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=71.03 E-value=22 Score=40.22 Aligned_cols=116 Identities=11% Similarity=0.067 Sum_probs=76.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhc-
Q 009824 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL- 93 (524)
Q Consensus 24 irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLLe~Lr~- 93 (524)
.+|++. |.|..-..++..+|+..||+|+.. ...++.++...+.. +|+|.+-..|.. +. .-++++.|+.
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr~~ 682 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELNSL 682 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHHhc
Confidence 466665 455666678888999999999843 35788888887754 898888766643 22 3345566653
Q ss_pred CC-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 94 EM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 94 ~~-diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.. +++ |++-+..-......+.+.|+++|...--+..+....+...+..
T Consensus 683 G~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~ 731 (762)
T 2xij_A 683 GRPDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEK 731 (762)
T ss_dssp TCTTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHH
Confidence 23 444 4455422222344567899999998666777777776666643
No 148
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=69.00 E-value=35 Score=34.56 Aligned_cols=77 Identities=18% Similarity=0.105 Sum_probs=55.4
Q ss_pred hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC---------CCC-------CCHHHHHHHHhcCCCCcEEEEecCCC
Q 009824 45 ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY---------MPD-------MDGFKLLELVGLEMDLPVVMLSAYSD 107 (524)
Q Consensus 45 ~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~---------MPd-------mdGleLLe~Lr~~~diPVIvlTa~~d 107 (524)
..+..|. .+.+.+++..+... .+|.|+++-. .++ ...+++++.++...++|||+..+-.+
T Consensus 143 ~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~ 219 (369)
T 3bw2_A 143 RAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMR 219 (369)
T ss_dssp HTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred HCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCC
Confidence 3466655 56778877665542 3899988531 111 23488888886556899999988889
Q ss_pred HHHHHHHHhcCCcEEEe
Q 009824 108 TKLVMKGINHGACDYLL 124 (524)
Q Consensus 108 ~~~~~~al~~GA~dYL~ 124 (524)
.+.+.+++..||+.+..
T Consensus 220 ~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 220 GGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999988765
No 149
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=67.57 E-value=25 Score=32.51 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=56.1
Q ss_pred HHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-----CCC----CCHHHHHHHHhcCCCCcEEEEec
Q 009824 36 LKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVY-----MPD----MDGFKLLELVGLEMDLPVVMLSA 104 (524)
Q Consensus 36 ~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~-----MPd----mdGleLLe~Lr~~~diPVIvlTa 104 (524)
.+.++.+-+.. +..+. .+.+.+++.++... ..|+|.+-.. ..+ ..++++++.++...++|||...+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecC
Confidence 34444444333 55554 55677787765442 3787754221 011 12456677776555899999999
Q ss_pred CCCHHHHHHHHhcCCcEEEe
Q 009824 105 YSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~dYL~ 124 (524)
-.+.+.+.+++++||+.++.
T Consensus 184 I~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 88999999999999999876
No 150
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=67.45 E-value=13 Score=36.31 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=49.0
Q ss_pred CceEEEEeCCC--CCCCH--------------------HHHHHHHhcC-CCCcEEEEecCC------CHHHHHHHHhcCC
Q 009824 69 NFDLVISDVYM--PDMDG--------------------FKLLELVGLE-MDLPVVMLSAYS------DTKLVMKGINHGA 119 (524)
Q Consensus 69 ~pDLVIlDi~M--PdmdG--------------------leLLe~Lr~~-~diPVIvlTa~~------d~~~~~~al~~GA 119 (524)
..|+|-+|+-. |-+|| +++++.++.. .++||++++-.. -...+..+.++||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 48888888733 22333 4566777665 789999885222 2466778889999
Q ss_pred cEEEeCCCCHHHHHHHHHHHH
Q 009824 120 CDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 120 ~dYL~KP~~~eeL~~aI~~vl 140 (524)
++++.-.+..+++...++.+.
T Consensus 124 dgii~~d~~~e~~~~~~~~~~ 144 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAAL 144 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHHH
Confidence 999997777777665555543
No 151
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=67.37 E-value=16 Score=35.56 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=38.8
Q ss_pred HHHHHHHhcCC-CCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 009824 85 FKLLELVGLEM-DLPVVMLSAYSD------TKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (524)
Q Consensus 85 leLLe~Lr~~~-diPVIvlTa~~d------~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vl 140 (524)
+++++.++... ++|+++++-... ...+..+.++|+++++.-.+..+++...+..+.
T Consensus 82 ~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 82 LELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 45566666544 899999853321 345677889999999997788887666655543
No 152
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=67.30 E-value=29 Score=32.77 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCeEEEE-C--CHHHHHHHHHhcCCCce-EEEEeCCCCCCC---------HHHHHHHHhcCCCCcEEEEec
Q 009824 38 ILEKFLRECQYEVTVT-N--RAITALKMLRENRNNFD-LVISDVYMPDMD---------GFKLLELVGLEMDLPVVMLSA 104 (524)
Q Consensus 38 ~L~~~L~~~gy~V~~a-~--sg~eALe~L~e~~~~pD-LVIlDi~MPdmd---------GleLLe~Lr~~~diPVIvlTa 104 (524)
.+.+.+++.|..+... . +..+.++.+... .| +|.+ +..|+.. +++.++.++...++||++-.+
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 3444445556555432 2 345666655443 33 5433 2225433 345666666555799998888
Q ss_pred CCCHHHHHHHHhcCCcEEEeC
Q 009824 105 YSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 105 ~~d~~~~~~al~~GA~dYL~K 125 (524)
-...+.+.+++++||+.+++=
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 888789999999999999863
No 153
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=67.07 E-value=32 Score=34.44 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh
Q 009824 43 LRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGIN 116 (524)
Q Consensus 43 L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~ 116 (524)
+++.++.|. .+.+.+++..+.+. .+|.|+++-.-.+ ...+++++.++...++|||+..+-.+.+.+.+++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 444566665 46677776555432 3888888632111 34578888776666899999999999999999999
Q ss_pred cCCcEEEe
Q 009824 117 HGACDYLL 124 (524)
Q Consensus 117 ~GA~dYL~ 124 (524)
.||+....
T Consensus 183 ~GAdgV~v 190 (332)
T 2z6i_A 183 LGAEAVQV 190 (332)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEe
Confidence 99988765
No 154
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=67.07 E-value=25 Score=33.54 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCCceEEE-EeCCCCC---CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 56 AITALKMLRENRNNFDLVI-SDVYMPD---MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVI-lDi~MPd---mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
..+..+.+.+. .++.|+ .++.-.+ .-.+++++.++...++|||...+-.+.+.+.++++.||++.++=
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34544544443 256555 4443111 12378888887777899999999999999999999999998773
No 155
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=66.40 E-value=22 Score=35.05 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=64.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++++|+.+.+. ..++..+++..-.|.. .-+..+..+.+.. .|++|+-..-.+.-|+.+++.+.. .+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a~--G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMAA--GTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHHH--TCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHHc--CCCEE
Confidence 456666666554 4444444432112322 2233444555543 577776422123346677777643 46777
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.. .. ....+.+..|..+++.+|-+.++|..++..++.
T Consensus 312 ~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 AS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp EC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred Ee-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 53 22 446677788899999999999999999998876
No 156
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=66.32 E-value=46 Score=33.82 Aligned_cols=101 Identities=10% Similarity=0.092 Sum_probs=64.2
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 009824 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (524)
Q Consensus 23 ~irVLIVD----Ddp~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (524)
+..++.++ +.....+.++.+=+.. +..|. .+.+.++|..+.+. ..|.|.+-.. ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566666 3344555555554444 55554 57788888877653 3888877431 22 12
Q ss_pred HHHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-CCC
Q 009824 84 GFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL-KPV 127 (524)
Q Consensus 84 GleLLe~L---r~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~-KP~ 127 (524)
-+..+..+ ....++|||.-.+-.+...+.+++.+||+.... ++|
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 23333333 122469999999999999999999999998644 554
No 157
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=65.93 E-value=41 Score=31.65 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCCC-C--HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe------CC
Q 009824 57 ITALKMLRENRNNFD-LVISDVYMPDM-D--GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL------KP 126 (524)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~MPdm-d--GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~------KP 126 (524)
.+..+.+.+. .++ +++.+..-.++ . .+++++.++...++|||...+-.+.+.+.++++.||++.+. .|
T Consensus 155 ~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVEL--GAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHH--TCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHc--CCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4444444433 255 55565542221 2 38888888766689999999999989999999999999876 35
Q ss_pred CCHHHHHHHH
Q 009824 127 VRMEELKNTW 136 (524)
Q Consensus 127 ~~~eeL~~aI 136 (524)
++..+++..+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6666665543
No 158
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=65.80 E-value=1.7 Score=42.95 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=46.8
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHhcCCCceEEEEeCCCC-CCC--HHHHH-HHHhcC
Q 009824 23 GMRVLAVDDD--QTCLKILEKFLRECQYEVTVTNRAIT--ALKMLRENRNNFDLVISDVYMP-DMD--GFKLL-ELVGLE 94 (524)
Q Consensus 23 ~irVLIVDDd--p~~~~~L~~~L~~~gy~V~~a~sg~e--ALe~L~e~~~~pDLVIlDi~MP-dmd--GleLL-e~Lr~~ 94 (524)
+.|||||+++ +.....+...|+..||+|+......- -.+.|. .+|+||++-... ..+ -++.+ ++++.
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d~~~~~l~~~~~~~L~~yV~~- 78 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSDYPAERMTAQAIDQLVTMVKA- 78 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEESCCGGGBCHHHHHHHHHHHHT-
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcCCccccCCHHHHHHHHHHHHh-
Confidence 3579999998 77889999999999999986553221 112332 389998873222 122 23333 34443
Q ss_pred CCCcEEEEecC
Q 009824 95 MDLPVVMLSAY 105 (524)
Q Consensus 95 ~diPVIvlTa~ 105 (524)
.--+|++.+.
T Consensus 79 -GGgLi~~gG~ 88 (259)
T 3rht_A 79 -GCGLVMLGGW 88 (259)
T ss_dssp -TCEEEEECST
T ss_pred -CCeEEEecCc
Confidence 3456766554
No 159
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=65.41 E-value=34 Score=29.99 Aligned_cols=107 Identities=10% Similarity=0.133 Sum_probs=67.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--h--C--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLR--E--C--QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~--~--~--gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~d 96 (524)
.++++|+.+.+.. ..++.+++ . . ...+.-.-+.++..+++.. .|++|+=.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677777765432 23334443 2 1 2233333455666666653 578876333 3344677888774 35
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+|||+.. .....+.++.|..+++. +-+.+++..+|..++..
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 7887642 23455666778899999 99999999999998864
No 160
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=65.37 E-value=33 Score=35.28 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC---------C--CCCHHHHHHHHh---cCCC
Q 009824 34 TCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYM---------P--DMDGFKLLELVG---LEMD 96 (524)
Q Consensus 34 ~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~M---------P--dmdGleLLe~Lr---~~~d 96 (524)
...+.++.+-+.. +..|. .+.+.++|..+.+ ..+|.|.+-..- . +.-.++.+..+. ...+
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3444444444444 56665 4667777766543 248888882110 0 122345454443 2458
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+|||...+-.+...+.+++.+||+....
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 9999999999999999999999998876
No 161
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=64.92 E-value=1.1e+02 Score=31.42 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=61.0
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCC------------C
Q 009824 23 GMRVLAVDD----DQTCLKILEKFLREC-QYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDM------------D 83 (524)
Q Consensus 23 ~irVLIVDD----dp~~~~~L~~~L~~~-gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~MPdm------------d 83 (524)
+..++.+|- .....+.++.+=+.. +..|.. +.+.++|..+.+. ..|.|.+... |+. .
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 355777762 223333444333332 556653 7788888877653 3898888543 322 2
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-++.+..+..... |||.-.+-.+...+.+++.+||+....
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 2344443332222 999988999999999999999988765
No 162
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=64.91 E-value=53 Score=30.88 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCC-CC--HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC------
Q 009824 56 AITALKMLRENRNNFD-LVISDVYMPD-MD--GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK------ 125 (524)
Q Consensus 56 g~eALe~L~e~~~~pD-LVIlDi~MPd-md--GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K------ 125 (524)
..+.++.+.+. .++ +++.++.-.+ .. .+++++.++...++|||.-.+-.+.+.+.++++.||+.++.=
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 44544544443 366 4445554222 12 378888887666899999999999899999999999998762
Q ss_pred CCCHHHHHHH
Q 009824 126 PVRMEELKNT 135 (524)
Q Consensus 126 P~~~eeL~~a 135 (524)
|+++++++..
T Consensus 231 ~~~~~~~~~~ 240 (253)
T 1thf_D 231 EIDVRELKEY 240 (253)
T ss_dssp CSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4455554443
No 163
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=64.53 E-value=14 Score=34.22 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=53.6
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHh
Q 009824 41 KFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEM--DLPVVMLSAYSDTKLVMKGIN 116 (524)
Q Consensus 41 ~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLLe~Lr~~~--diPVIvlTa~~d~~~~~~al~ 116 (524)
+..+..|..+. .+.+..++.+.... .+|.|++ .| +..|++.++.++... ++|||...+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 34455566543 47888888766542 3898886 22 123677777775443 59999888776 778888899
Q ss_pred cCCcEEEeC
Q 009824 117 HGACDYLLK 125 (524)
Q Consensus 117 ~GA~dYL~K 125 (524)
+||+.+..=
T Consensus 168 ~Ga~gv~vG 176 (212)
T 2v82_A 168 AGCAGAGLG 176 (212)
T ss_dssp HTCSEEEEC
T ss_pred cCCCEEEEC
Confidence 999998753
No 164
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=64.34 E-value=51 Score=34.99 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=64.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 009824 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (524)
Q Consensus 23 ~irVLIVD----Ddp~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (524)
+..++++| ..+...+.++.+-+.. +..|. .+.+.++|..+... ..|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 34567776 3445556666665554 44554 36788888777653 3788887321 21 12
Q ss_pred HHHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLLe~Lr---~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.++++..+. ...++|||.-.+-.+...+.+++.+||+....
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 344454442 23479999999999999999999999998776
No 165
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=64.21 E-value=39 Score=33.33 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCC-C--CCCHHHHHHHH-hcC-CCCcEEEEecCCCHH
Q 009824 36 LKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYM-P--DMDGFKLLELV-GLE-MDLPVVMLSAYSDTK 109 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~M-P--dmdGleLLe~L-r~~-~diPVIvlTa~~d~~ 109 (524)
...+....+..|..+. .+++.+|+..++.. .+|+|=+.-.- - ..| ++....+ +.- .++|+|.-++-...+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 3444444556788865 77888888776642 47877554221 1 112 3444333 333 378999999999999
Q ss_pred HHHHHHhcCCcEEEe
Q 009824 110 LVMKGINHGACDYLL 124 (524)
Q Consensus 110 ~~~~al~~GA~dYL~ 124 (524)
.+.++.++||+.+|+
T Consensus 234 dv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999987
No 166
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=63.57 E-value=53 Score=34.86 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCC--------------CCCCCHHHHHHHHhcCCC
Q 009824 34 TCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVY--------------MPDMDGFKLLELVGLEMD 96 (524)
Q Consensus 34 ~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~--------------MPdmdGleLLe~Lr~~~d 96 (524)
...+.++.+-+.. +..|. .+.+.++|..+.+.. .|.|.+-.. +|....+.++..+....+
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ 358 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFG 358 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGT
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCC
Confidence 3445555555554 56655 367777777666543 787777331 111223556666655568
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+|||...+-.+...+.+++.+||+....
T Consensus 359 ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 359 VPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 9999999999999999999999998654
No 167
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=63.49 E-value=47 Score=33.14 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 009824 85 FKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 85 leLLe~Lr~~~diPVI--vlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~ 142 (524)
+++++.++....+||| .-.+-.+.+.+.+++.+||+.+++ |--++.+....+...+..
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 5667766555568887 455666899999999999999986 444555555555555443
No 168
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=62.85 E-value=12 Score=33.51 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=32.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE--CQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~--~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
+.+|++||-|+.. .+..++.. .++.+..+.. ....+.+......+|+||+|.
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 5789999988653 23444432 3566665544 333344444344699999997
No 169
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=62.39 E-value=25 Score=32.58 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=46.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC--------CCCHHHHHHHHhcCCC-CcEEEEecCCCHHHHHHHHhcCCcEE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMP--------DMDGFKLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDY 122 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MP--------dmdGleLLe~Lr~~~d-iPVIvlTa~~d~~~~~~al~~GA~dY 122 (524)
.+.+..++.+.... .+|.|++....| ..-|++.++.++...+ +|||+..+-. .+.+.++++.||+.+
T Consensus 122 s~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 35777776555432 389888632222 1236788887765445 9998887776 777888889999988
Q ss_pred Ee
Q 009824 123 LL 124 (524)
Q Consensus 123 L~ 124 (524)
..
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 170
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=60.94 E-value=49 Score=31.04 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=51.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc---CCcEEEe---
Q 009824 55 RAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH---GACDYLL--- 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~---GA~dYL~--- 124 (524)
+..+..+.+.+. .+| +++.++.-.+. -.+++++.++...++|||.-.+-.+.+.+.+++++ ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 445554544443 367 45566542111 23678888876668999999999999999999999 9999876
Q ss_pred ---CCCCHHHHHHH
Q 009824 125 ---KPVRMEELKNT 135 (524)
Q Consensus 125 ---KP~~~eeL~~a 135 (524)
.|+...++...
T Consensus 225 l~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 225 LYAKAFTLEEALEA 238 (244)
T ss_dssp HHTTSSCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 35555554443
No 171
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=60.72 E-value=74 Score=30.82 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=39.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.|++++.. |.-+++.+. ..+|||+....... .+.++.| .+++..+ +.++|..++..++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57776643 544666553 35798866322222 3346778 8999877 99999999998875
No 172
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.50 E-value=23 Score=29.69 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHH
Q 009824 32 DQTCLKILEKFLRECQYEVTVTNRAITALKMLR 64 (524)
Q Consensus 32 dp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~ 64 (524)
+...++..++-++..||+|..+.+.++|+..++
T Consensus 86 deneleefkrkiesqgyevrkvtddeealkivr 118 (134)
T 2lci_A 86 DENELEEFKRKIESQGYEVRKVTDDEEALKIVR 118 (134)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCeeeeecCChHHHHHHHH
Confidence 333333344444444555555555555555444
No 173
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=60.16 E-value=37 Score=29.01 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=46.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHh-cCCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVG-LEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~Lr-~~~diPV 99 (524)
+..|.++|.++...+.++ ..|+.+.... .-.+.++.+.- ...|+||+-+ |+. .-..++..++ ..+.++|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~--~~~~~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTI--PNGYEAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECC--SCHHHHHHHHHHHHHHCSSSEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEEC--CChHHHHHHHHHHHHHCCCCeE
Confidence 355666676665544332 2455554321 12223332211 2367776643 322 1222334443 4567777
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
|.... +.+......+.||+..+.
T Consensus 102 iar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEEC
Confidence 76654 345556666889887665
No 174
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=58.97 E-value=37 Score=31.81 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=44.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLREN---RNNFDLVISDVY 78 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~---~~~pDLVIlDi~ 78 (524)
+|.+.+|..||-++...+..++.+++.|+ +|. ...++.+.+..+... ...+|+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 45567999999999999999999988776 354 557787776655321 245999999964
No 175
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=58.62 E-value=5.1 Score=32.74 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhh
Q 009824 221 ILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGA 269 (524)
Q Consensus 221 IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa 269 (524)
|+.++. .|+|.+||+-++.+...|+..+...++.+|+ .+...++.+|.
T Consensus 37 Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~lv~~a~ 85 (90)
T 3ulq_B 37 ILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAK 85 (90)
T ss_dssp HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 444444 6666666666666666666556666667776 34445555554
No 176
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=58.62 E-value=49 Score=30.65 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCCceEEEE-eCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe------C
Q 009824 56 AITALKMLRENRNNFDLVIS-DVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL------K 125 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIl-Di~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~------K 125 (524)
..+.++.+.+.. +|.|++ ++.-.+. -.++.++.++...++|||+-.+-...+.+.+++++||+.++. .
T Consensus 156 ~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~ 233 (253)
T 1h5y_A 156 AVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 233 (253)
T ss_dssp HHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcC
Confidence 445444444432 676654 4432111 145777777655689999998888888899999999999875 3
Q ss_pred CCCHHHHHHHH
Q 009824 126 PVRMEELKNTW 136 (524)
Q Consensus 126 P~~~eeL~~aI 136 (524)
+...+++...+
T Consensus 234 ~~~~~~~~~~l 244 (253)
T 1h5y_A 234 VLSIAQVKRYL 244 (253)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44545444443
No 177
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=58.38 E-value=19 Score=35.49 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=39.0
Q ss_pred HHHHHHHhcC-CCCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 85 FKLLELVGLE-MDLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 85 leLLe~Lr~~-~diPVIvlTa~~------d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
+++++.+|.. .++||++++=.. -...+.++.++|+++.+.-.+..+|....++.+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 5566666654 789999997432 245678888999999999777777755544444
No 178
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=58.37 E-value=61 Score=31.94 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=71.8
Q ss_pred ccEEEEEeCCHH-HHHHHHHHHHhCCCeEEEE-C--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 23 GMRVLAVDDDQT-CLKILEKFLRECQYEVTVT-N--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~-~~~~L~~~L~~~gy~V~~a-~--sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
.++++|+.+.+. ....++.+.++.+ .++.+ . +.++..+.+. ..|++++-... +.-|+.+++.+. ..+|
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma--~G~P 356 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 356 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH--CCCC
Confidence 577888876653 3466777777777 55443 3 4555555553 26888765543 445677888774 3578
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
||.. ... ...+.++.| .+++..|-+.++|..++..++.
T Consensus 357 vi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 8753 332 344555567 9999999999999999999887
No 179
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=58.16 E-value=44 Score=33.37 Aligned_cols=108 Identities=11% Similarity=0.182 Sum_probs=65.7
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCC
Q 009824 23 GMRVLAVDDD---QTCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM 95 (524)
Q Consensus 23 ~irVLIVDDd---p~~~~~L~~~L~~~gy--~V~~a~--sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~ 95 (524)
.++++|+.+. ......++.+.++.+. .|.... +..+..+.+.. .|++|+-.. .+.-|+.+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4667777651 1234455666655443 344332 33556666553 577776432 2334677777764 3
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+|||.. .... ..+.+..|.++++..|-+.++|..++..++.
T Consensus 349 G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 5788764 3332 3455677889999999999999999998875
No 180
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=58.04 E-value=59 Score=31.74 Aligned_cols=42 Identities=10% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+|||+.-...+.. +.++.| .+++..| +.++|..++..++.
T Consensus 300 ~G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 468998764323322 235668 8999988 99999999998875
No 181
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=57.49 E-value=37 Score=32.33 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 55 RAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 55 sg~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+..+..+.+.+.. .| |.+.|....+. .-+++++.++...++|||+..+..+.+.+.++++.||+..+.=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4555555555432 44 55567654321 1267888887777899999988888888999999999998774
No 182
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=57.46 E-value=44 Score=31.19 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=56.5
Q ss_pred HHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEE---EEeCCCCC-----CCHHHHHHHHhcCCCCcEEEEecC
Q 009824 36 LKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLV---ISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 36 ~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLV---IlDi~MPd-----mdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.+.++.+-+.. +..|. .+.+.+++..++.. ..|.| +..+. |+ ...+++++.++.. ++|||...+-
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI 195 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCC
Confidence 34444444333 55554 45677887766553 37887 33221 21 1246778877655 8999999999
Q ss_pred CCHHHHHHHHhcCCcEEEe
Q 009824 106 SDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 106 ~d~~~~~~al~~GA~dYL~ 124 (524)
.+.+.+.+++++||+.++.
T Consensus 196 ~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 8899999999999999876
No 183
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=57.45 E-value=96 Score=29.19 Aligned_cols=70 Identities=11% Similarity=0.242 Sum_probs=49.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLREN---RNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~---~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
+|.+.+|..||-++...+..++.++..|+ +|. ...++.+.+..+... ...||+|++|...+ +-..+++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHH
Confidence 45567999999999999999999988776 354 557777776655321 24599999997532 334445443
No 184
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=57.42 E-value=51 Score=31.82 Aligned_cols=106 Identities=18% Similarity=0.331 Sum_probs=64.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++++|+.+.+. ..++.+.++.+. .|......++..+.+.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEE
Confidence 356777766542 445555554432 34444333344444442 5777764432 344677777764 357888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeC-CCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLK-PVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~K-P~~~eeL~~aI~~vlr 141 (524)
......- .+.+..|..+++.. |.+.++|..++..++.
T Consensus 299 ~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 7543332 33455677899997 8999999999998876
No 185
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=57.23 E-value=73 Score=31.05 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=54.5
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 24 MRVLAV-DDDQTCLKILEKFLRECQYEVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIV-DDdp~~~~~L~~~L~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
++++++ .+.+..+..++++.... -.|.... ...+..+++. ..|++++.- -|+ +++.+. ..+|+|
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~a--~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGAA--LGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHHH--TTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHHH--cCCCEE
Confidence 455554 55554455555544321 1344331 2233344443 267776642 354 546553 468998
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
+.....+.... ++.| .+++.. .+.++|..++..++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 76443443332 4556 577774 489999999988874
No 186
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=57.05 E-value=34 Score=37.40 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=68.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHh-
Q 009824 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVG- 92 (524)
Q Consensus 23 ~irVLIV----DDdp~~~~~L~~~L~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLLe~Lr- 92 (524)
+-+||++ |-|..-..++..+|+..||+|+.. ...++.++.+.+.+ +|+|.+-..|.. ++.+ ++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4567777 677788888999999999999854 35778888887765 999999887753 2222 3455564
Q ss_pred cCCCCcEEEEecCCCHHHHHHHH---hcCCcEEEeC
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGI---NHGACDYLLK 125 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al---~~GA~dYL~K 125 (524)
...++||++--+....+....-+ -.||+.|...
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D 211 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN 211 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECC
Confidence 44678887666656655432111 1288888653
No 187
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=56.84 E-value=45 Score=30.29 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=49.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENR-NNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~-~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
.+|.+.+|..||-++......+..+...++ .|. ...++.+.+..+.... ..+|+|++|...+ .-.++++.+
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 79 GLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 455567999999999999999999987765 354 5678877776654321 3599999997532 223445444
No 188
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=56.43 E-value=23 Score=34.58 Aligned_cols=106 Identities=11% Similarity=0.158 Sum_probs=62.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCC------CCCCHHHHHHHHhcCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYM------PDMDGFKLLELVGLEM 95 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~M------PdmdGleLLe~Lr~~~ 95 (524)
++++|+.+.+.. ..++.+.....-.|... -+.++..+++.. .|++|+-... ++.-|..+++.+. .
T Consensus 230 ~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~ 302 (394)
T 3okp_A 230 AQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--C 302 (394)
T ss_dssp CEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--T
T ss_pred eEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--c
Confidence 556666554332 23333332221233322 233555555543 5777764433 1445677777774 3
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+|||. |.... ..+.+..| .+++..|-+.++|..++..++.
T Consensus 303 G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 303 GVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 578876 33332 34455678 9999999999999999998875
No 189
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=56.10 E-value=61 Score=33.00 Aligned_cols=108 Identities=7% Similarity=0.004 Sum_probs=65.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVT-VT-NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp-~~~~~L~~~L~~~gy~V~-~a-~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
.++++||.+.+ .....++.+.++.+-.|. .. ....+..+.+.. .|++++=.. .+.-|+.+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 35666666543 345566666655543443 22 233333344432 567665433 2344566677664 25788
Q ss_pred EEEecCCCHHHHHHHHhcC---------CcEEEeCCCCHHHHHHHHHHHHH
Q 009824 100 VMLSAYSDTKLVMKGINHG---------ACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~G---------A~dYL~KP~~~eeL~~aI~~vlr 141 (524)
|... . .-..+.+..| .++++..|-+.++|..++..++.
T Consensus 394 I~s~-~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVRR-T---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEES-S---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EECC-C---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 7542 2 3455666777 89999999999999999998874
No 190
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=55.28 E-value=82 Score=32.01 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=70.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp-~~~~~L~~~L~~~gy~V~-~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
.++++||.+.+ .....++.+.++.+-.|. ... ...+..+.+.. .|++++=... +.-|+.+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHH--CCCCE
Confidence 46778887765 356677777766554454 222 33333455543 5787764432 344666777664 25788
Q ss_pred EEEecCCCHHHHHHHHhcC---------CcEEEeCCCCHHHHHHHHHHHHH
Q 009824 100 VMLSAYSDTKLVMKGINHG---------ACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~G---------A~dYL~KP~~~eeL~~aI~~vlr 141 (524)
|.. .. .-..+.+..| .++++..|-+.++|..++..++.
T Consensus 393 I~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VVA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EEe-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 864 22 3455666777 89999999999999999998874
No 191
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=55.19 E-value=13 Score=36.73 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=49.6
Q ss_pred CccEEEEEeCC-----HHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHhcCCCceEEEEeCCCCCCCHHH---H
Q 009824 22 IGMRVLAVDDD-----QTCLKILEKFLRECQ-YEVTVTNRAI-----TALKMLRENRNNFDLVISDVYMPDMDGFK---L 87 (524)
Q Consensus 22 ~~irVLIVDDd-----p~~~~~L~~~L~~~g-y~V~~a~sg~-----eALe~L~e~~~~pDLVIlDi~MPdmdGle---L 87 (524)
+.+|||||... +.....|..+|++.| |+|+.+.+.. +.+ .+.-..+|+||++..+...+.-. |
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~~L~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VLDFSPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CCCCTTCSEEEECCCSSCCCHHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hhhhhcCCEEEEeCCCCcCCHHHHHHH
Confidence 35899999873 677789999999888 9998776531 222 12224699999988655443322 2
Q ss_pred HHHHhcCCCCcEEEEe
Q 009824 88 LELVGLEMDLPVVMLS 103 (524)
Q Consensus 88 Le~Lr~~~diPVIvlT 103 (524)
.+.++. ...+|++=
T Consensus 80 ~~yV~~--Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQN--GGGVVIYH 93 (281)
T ss_dssp HHHHHT--TCEEEEEG
T ss_pred HHHHHc--CCCEEEEe
Confidence 234443 45777664
No 192
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=54.61 E-value=32 Score=34.60 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=59.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe----------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE----------VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~----------V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
.++++||-|.+.....+++++++.|.. |.......+..+++. ..|++++--..-+.=|.-++|.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAm- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPT- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHH-
Confidence 366777777666545566666665543 222221223333332 25776652211111234455655
Q ss_pred cCCCCcEEEEecCCCHHH-HHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 93 LEMDLPVVMLSAYSDTKL-VMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~-~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
...+|||.-+...+... +....+.| ++..+-+.++|..++..++..
T Consensus 300 -A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 -CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred -HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 34689985323333333 33333444 566667899999999998863
No 193
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=54.53 E-value=18 Score=33.83 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=43.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~---V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP 80 (524)
+|.+.+|..||-++...+..++.++..|+. |. ...++.+.+..+. ...||+|++|...+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~ 140 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPM 140 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTT
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHH
Confidence 455679999999999999999999987764 65 3456666544331 24599999997543
No 194
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=54.38 E-value=93 Score=33.05 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=64.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 009824 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (524)
Q Consensus 23 ~irVLIVD----Ddp~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (524)
+..++++| +.....+.++.+-+.. +..|. .+.+.++|.++.... .|.|++.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCC-CCcCcccccccCCCcc
Confidence 34577776 3445556666666655 44443 467788877766543 788887532 22 12
Q ss_pred HHHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLLe~Lr---~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-++++..+. ...++|||.-.+-.+...+.+++.+||+..+.
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 344444332 13469999988999999999999999998776
No 195
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=54.21 E-value=28 Score=33.36 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+++++.++...++||++-.+-.+.+.+.+++.+||+.+++
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 45677777665689999999998899999999999999986
No 196
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=54.05 E-value=68 Score=27.11 Aligned_cols=76 Identities=22% Similarity=0.176 Sum_probs=47.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc--CCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLREN--RNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~--~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.|||.|+.|. ... ..++-.|.++..+.+.+++.+.+++- ..++.+|++.-.+-+. --+.++.++.....|+|
T Consensus 3 ~mkiaVIgD~-dtv----~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIADP-ETA----QGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEECH-HHH----HHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeCH-HHH----HHHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 4789999993 322 23444588888777777766555431 2368999998776542 22344555544567877
Q ss_pred EEec
Q 009824 101 MLSA 104 (524)
Q Consensus 101 vlTa 104 (524)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6543
No 197
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.99 E-value=65 Score=30.21 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCCC---HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFD-LVISDVYMPDMD---GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pD-LVIlDi~MPdmd---GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+..+.+.+.. .| +.+.|....+.. -+++++.++...++|||+.....+.+.+.++++.||+..+.
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 4555555555432 44 556676543332 24556777767789999999999999999999999988876
No 198
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=53.85 E-value=1.3e+02 Score=29.58 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=61.7
Q ss_pred HHHHHHhCCC-eEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHH
Q 009824 39 LEKFLRECQY-EVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 39 L~~~L~~~gy-~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~ 113 (524)
+++.|+. |. .+-.+ .+..+.++.+... .+|.|++|+.=...+--++...++ .....++++-+...+...+.+
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5566654 44 33322 3344455555543 499999998554344444444443 234678999999889999999
Q ss_pred HHhcCCcEEEeCC-CCHHHHHHHHHH
Q 009824 114 GINHGACDYLLKP-VRMEELKNTWQH 138 (524)
Q Consensus 114 al~~GA~dYL~KP-~~~eeL~~aI~~ 138 (524)
+++.|++..+.-= -+.+++..+++.
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999998766522 456776655553
No 199
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=53.35 E-value=49 Score=30.03 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=44.8
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcC--CCceEEEEeCC
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~-~a~sg~eALe~L~e~~--~~pDLVIlDi~ 78 (524)
.+|.+.+|..||-++...+..+..++..+.. |. ...++.+.+..+.... ..+|+|++|..
T Consensus 85 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 85 ALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 4555789999999999999999999877653 54 5577777766554210 35999999874
No 200
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=53.03 E-value=57 Score=30.62 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=53.9
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc-----C-CcEEE
Q 009824 55 RAITALKMLRENRNNFD-LVISDVY----MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH-----G-ACDYL 123 (524)
Q Consensus 55 sg~eALe~L~e~~~~pD-LVIlDi~----MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~-----G-A~dYL 123 (524)
+..+..+.+.+. .++ +++.++. +.+. .+++++.++...++|||...+-.+.+.+.++++. | |++.+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 455554444433 366 5555642 2333 3788888866568999999999999999999988 9 99876
Q ss_pred e------CCCCHHHHHHH
Q 009824 124 L------KPVRMEELKNT 135 (524)
Q Consensus 124 ~------KP~~~eeL~~a 135 (524)
+ .+++.++++..
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 6 46666666543
No 201
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=52.98 E-value=1.5e+02 Score=28.68 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=60.2
Q ss_pred HHHHHHhCCC-eEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHH
Q 009824 39 LEKFLRECQY-EVT--VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 39 L~~~L~~~gy-~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~ 113 (524)
+++.|+. |. .+- ......+.++.+... .+|.|++|..=.-.+--++...++ .....++++-+...+...+.+
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 5566654 43 222 223344445555443 499999998543334444444443 224678888888888899999
Q ss_pred HHhcCCcEEEeCC-CCHHHHHHHHHH
Q 009824 114 GINHGACDYLLKP-VRMEELKNTWQH 138 (524)
Q Consensus 114 al~~GA~dYL~KP-~~~eeL~~aI~~ 138 (524)
+++.|++..+.-= -+.+++..+++.
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999998765522 457776665554
No 202
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=52.86 E-value=47 Score=30.24 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=43.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~--~~pDLVIlDi~ 78 (524)
+|.+.+|..||-++......++.++..|. .|. ...++.+.+..+.... ..+|+|++|..
T Consensus 91 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 91 LPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp SCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 45467999999999999999999987765 344 4567777666554321 35999999864
No 203
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=52.82 E-value=78 Score=30.69 Aligned_cols=57 Identities=16% Similarity=0.353 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe------CCCCHHHHHHHHHHHHH
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL------KPVRMEELKNTWQHVIR 141 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~------KP~~~eeL~~aI~~vlr 141 (524)
+++++.++...++|||...+-.+.+.+.+++..||+.... .|.-..++...+...+.
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~ 292 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMD 292 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHH
Confidence 4677777766689999988888999999999999887644 35444555555555444
No 204
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=52.49 E-value=58 Score=30.08 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 54 NRAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 54 ~sg~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+..+..+.+.+. .+| +.+.|...... ..+++++.++...++|||+-....+.+.+.+++++||+.+..
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4566666666554 367 55666543222 245667777665689999988888889999999999888774
No 205
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.21 E-value=13 Score=29.43 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhc
Q 009824 221 ILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDG 272 (524)
Q Consensus 221 IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~ig 272 (524)
|+.++ ..++|.+||+-.+.+...|+......+..+|+ .+...++.+|...|
T Consensus 29 vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~g 80 (82)
T 1je8_A 29 ILKLI-AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 80 (82)
T ss_dssp HHHHH-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 44444 36666666666665555555555556666666 33345555555444
No 206
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=52.15 E-value=18 Score=34.00 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.+++.+.+.+ ||+| =.||+.-- ++++.++...++|||.=-.-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i---EiLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI---ELLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE---EEECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE---EECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 45777777654 8977 33687543 788888777789999888889999999999999998765
No 207
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=52.13 E-value=56 Score=30.50 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCceE-EEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc---CCcEEEe----
Q 009824 56 AITALKMLRENRNNFDL-VISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH---GACDYLL---- 124 (524)
Q Consensus 56 g~eALe~L~e~~~~pDL-VIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~---GA~dYL~---- 124 (524)
..+.++.+.+. .+|. ++.+..-.+. -.+++++.++...++|||.-.+-.+.+.+.++++. ||+.++.
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 35555555443 3664 4566543322 24678888876678999999999998999999998 9998876
Q ss_pred --CCCCHHHHHH
Q 009824 125 --KPVRMEELKN 134 (524)
Q Consensus 125 --KP~~~eeL~~ 134 (524)
.|....+++.
T Consensus 229 ~~~~~~~~~~~~ 240 (244)
T 2y88_A 229 YARRFTLPQALA 240 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCcCHHHHHH
Confidence 3555544443
No 208
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=51.88 E-value=52 Score=30.55 Aligned_cols=60 Identities=22% Similarity=0.436 Sum_probs=44.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCC
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~--~~pDLVIlDi~ 78 (524)
.+|.+.+|..||-++...+..+..++..|+ .|. ...++.+.+..+.... ..+|+|++|..
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 345567999999999999999998887665 344 5577777666554321 35999999965
No 209
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=51.75 E-value=57 Score=30.47 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=46.6
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 23 GMRVLAVD------DDQTCLKILEKFLRECQYEVTVT----NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 23 ~irVLIVD------Ddp~~~~~L~~~L~~~gy~V~~a----~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
+-+|++|+ |.......+++.|++.|+++... .+.++..+.+++ .|.|++ ||.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 46899997 44567788899999999998877 477777777764 577775 7887777776664
No 210
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=51.24 E-value=61 Score=31.32 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.++++.++...++||++=.+-.+.+.+.+++..||+.+++=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57788887666899888777777999999999999999873
No 211
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=51.18 E-value=41 Score=32.05 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=38.4
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 69 NFDLVISDVYMPDMDG-------FKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+|.|++.-.-|+..| ++-++.++. ..+++| .+.+--+.+.+..+.++||+.++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCSTTTHHHHHHHTCCEEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCcCHHHHHHHHHcCCCEEEE
Confidence 3788888777888766 333445543 335555 455555678899999999999876
No 212
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=51.03 E-value=22 Score=33.09 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=48.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhcC--CCCcEEEEecCCCHHHHHHHHhcCCcE
Q 009824 52 VTNRAITALKMLRENRNNFDLVISDVYMPDM--------DGFKLLELVGLE--MDLPVVMLSAYSDTKLVMKGINHGACD 121 (524)
Q Consensus 52 ~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm--------dGleLLe~Lr~~--~diPVIvlTa~~d~~~~~~al~~GA~d 121 (524)
.+.+.+++.++. . ..|.|+++-..|.. -|++.++.+... .++|||.+-+-. .+.+.++++.||.+
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 567888876653 2 38999887655422 367788777544 689999887766 67788999999999
Q ss_pred EEe
Q 009824 122 YLL 124 (524)
Q Consensus 122 YL~ 124 (524)
+-+
T Consensus 169 Vav 171 (210)
T 3ceu_A 169 AVV 171 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 213
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=50.69 E-value=1.1e+02 Score=32.13 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCHHHHHHHHh---cCCC
Q 009824 34 TCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-----------DMDGFKLLELVG---LEMD 96 (524)
Q Consensus 34 ~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----------dmdGleLLe~Lr---~~~d 96 (524)
...+.++.+-+.. +..|. ...+.++|..+.+. .+|.|.+...-- +...++.+..+. ...+
T Consensus 264 ~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 340 (494)
T 1vrd_A 264 RVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYD 340 (494)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcC
Confidence 3455555555544 45543 45677777555542 378888743210 122344443332 2358
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+|||.-.+-.+...+.+++.+||+....
T Consensus 341 ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 341 VPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999988765
No 214
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=50.61 E-value=22 Score=36.54 Aligned_cols=104 Identities=10% Similarity=0.070 Sum_probs=57.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLREC--QYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~--gy~V~-~a~s-g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~di 97 (524)
+++||.||.-- . .+.-...+.+. +++++ .+.. .+.+-+..++.. +. +..|+. .+-...|+
T Consensus 6 ~~~rv~VvG~G-~-g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~g--v~-~~~~~~-----------~l~~~~D~ 69 (372)
T 4gmf_A 6 PKQRVLIVGAK-F-GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFG--IP-LYTSPE-----------QITGMPDI 69 (372)
T ss_dssp -CEEEEEECST-T-THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTT--CC-EESSGG-----------GCCSCCSE
T ss_pred CCCEEEEEehH-H-HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhC--CC-EECCHH-----------HHhcCCCE
Confidence 46899999864 2 22222223232 57777 4443 344444443321 22 233431 11112344
Q ss_pred cEEEEecCC-C----HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 98 PVVMLSAYS-D----TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 98 PVIvlTa~~-d----~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
-+| .|... - .+.+.+++++|..=++-||++.+|....++.+-+.
T Consensus 70 v~i-~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 70 ACI-VVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp EEE-CCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEE-ECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 333 33222 2 57889999999999999999999888777766443
No 215
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=50.18 E-value=1.1e+02 Score=29.73 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC-CCHHH
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP-VRMEE 131 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~--~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP-~~~ee 131 (524)
+..+.++.+... .+|.||+|+.---.+.-++...++. ...++++|-....+...+.++++.|++..++-= -+.++
T Consensus 25 ~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed 102 (261)
T 3qz6_A 25 YNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAET 102 (261)
T ss_dssp CCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHH
T ss_pred CCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHH
Confidence 335555555543 4999999997665555555555532 235677777777788899999999999876633 46677
Q ss_pred HHHHHHHH
Q 009824 132 LKNTWQHV 139 (524)
Q Consensus 132 L~~aI~~v 139 (524)
+..+++.+
T Consensus 103 ~~~~~~~~ 110 (261)
T 3qz6_A 103 MRETVRLA 110 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666654
No 216
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=50.18 E-value=4.4 Score=40.27 Aligned_cols=50 Identities=8% Similarity=-0.239 Sum_probs=32.0
Q ss_pred cCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhcCCCchhhhhhhhhccCCCcccCCCC
Q 009824 225 MNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPG 283 (524)
Q Consensus 225 mk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~~sd~~ll~~aa~igl~hhe~~dGsG 283 (524)
.++..++.+| ++++...|+. .|...+.....| .........|||+|+|++
T Consensus 176 ~~~~~l~~~E--~~~~~~~H~~-----iG~~ll~~w~lp--~~i~~~I~~HHe~~~~~~ 225 (305)
T 3hc1_A 176 EEKITFGQAE--ERLFGTSHCE-----VGFALAKRWSLN--EFICDTILYHHDIEAVPY 225 (305)
T ss_dssp HHCCCHHHHH--HHHHSSCHHH-----HHHHHHHHTTCC--HHHHHHHHHTTCGGGCSS
T ss_pred hcCCCHHHHH--HHHHCCCHHH-----HHHHHHHHcCCC--HHHHHHHHHhCChhhccc
Confidence 4667788888 7773337776 566666533222 223345578999999976
No 217
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=49.75 E-value=62 Score=32.33 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCcEEEE--ecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHhc
Q 009824 84 GFKLLELVGLEMDLPVVML--SAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvl--Ta~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~~ 143 (524)
.+++++.++...++|||++ .+-.+++.+.++++.||++.++ |--++.....++..++..+
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 3677887876678999887 4455789999999999999976 3345777777777777654
No 218
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=49.62 E-value=18 Score=35.70 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=38.5
Q ss_pred HHHHHHHhcC-CCCcEEEEec------CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 85 FKLLELVGLE-MDLPVVMLSA------YSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 85 leLLe~Lr~~-~diPVIvlTa------~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
+++++.+|.. .++|||+|+= ++-...+.++.++|+++.|.--+..+|.......+
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 5566666654 7899999973 23345688888999999999667777754444433
No 219
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=49.56 E-value=11 Score=37.59 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=40.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
-++.+||-++.....|++-++...--.+...++.+++..+......+|+||+|-
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 579999999999999999887633222355788888887654434699999995
No 220
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=49.37 E-value=12 Score=37.24 Aligned_cols=92 Identities=23% Similarity=0.348 Sum_probs=59.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCC-CcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD-LPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~d-iPVIvl 102 (524)
|||.||-....-.+.+.++|++.|++|.......+.+ ..+|+||+ -|.||. +|+..+...+ +||+=+
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilGI 97 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFGI 97 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEEE
Confidence 7888885322116778888998999988655432221 13788876 378885 4444443222 899877
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 103 Ta~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.. |-.+||. ++..+++..++..++.
T Consensus 98 N~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 98 NT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred CC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 64 5556776 4677777778887776
No 221
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=49.13 E-value=35 Score=31.25 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=44.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN--RNNFDLVISDVYMP 80 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~-~a~sg~eALe~L~e~--~~~pDLVIlDi~MP 80 (524)
++.+.+|..||=++...+..++.++..+.. |. ...++.+.+..+... ...+|+|++|....
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 455679999999999999999999877653 54 567777665544310 03599999997544
No 222
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=48.53 E-value=56 Score=27.75 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=67.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCC-cE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL-PV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~-a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~di-PV 99 (524)
+.++++|+.+.+. ...++.++++.+..|.. .-+..+..+.+. ..|++++-.. .+.-|+.+++.+. ..+ ||
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 3588899987654 46677777777766554 122455555553 3788887544 3445777888774 355 88
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
|..+..... .+.+..+. ++..|-+.+++..++..++.
T Consensus 103 i~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 103 IANSPLSAT---RQFALDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EECCTTCGG---GGGCSSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred EeeCCCCch---hhhccCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 873322222 22223333 37888999999999998876
No 223
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=47.60 E-value=64 Score=30.40 Aligned_cols=68 Identities=7% Similarity=0.092 Sum_probs=48.6
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCC---CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFD-LVISDVYMP---DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pD-LVIlDi~MP---dmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+..+.+.+. .+| |.+.|+.-. ...-+++++.++...++|||+--+-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 455555555543 255 455676422 22336788888777799999999999999999999999887765
No 224
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=47.48 E-value=24 Score=32.54 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=35.9
Q ss_pred CceEEEEeCCCCCCCHH-------HHHHHHhcC-----CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 69 NFDLVISDVYMPDMDGF-------KLLELVGLE-----MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 69 ~pDLVIlDi~MPdmdGl-------eLLe~Lr~~-----~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..|.|+++-..|+.+|. +-++.++.. .++||++.-+-. .+.+.+++++||+.+++
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEE
Confidence 37889888777765542 334444321 267776555544 67777888899998866
No 225
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=47.43 E-value=2.2e+02 Score=28.23 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--C------------HHHHHHHHhc
Q 009824 31 DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPDM--D------------GFKLLELVGL 93 (524)
Q Consensus 31 Ddp~~~~~L~~~L~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm--d------------GleLLe~Lr~ 93 (524)
+.....+.++.+-+.. +.-|. .+.+.++|..+.+.. .|.|++--+ ++. + -++++..++.
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 4455666776666654 34444 256788887776543 788877322 221 1 3566666655
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 94 ~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..++|||.-.+-.+...+.+++.+||+....
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 5589999999999999999999999998765
No 226
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=46.67 E-value=1.1e+02 Score=28.59 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=48.1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 18 ~~~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
..+|.+.+|..||-++......+..++..|+. |. ...++.+.+..+. ....+|+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCchH--HHHHHHHHH
Confidence 34555689999999999999999999887653 54 5567766554432 113699999987432 223445444
No 227
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=46.18 E-value=29 Score=33.25 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHH---HHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 84 GFKLLELVGLEMDLPVVMLSAYSDTK---LVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~~d~~---~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
++++++.++...++||++++ +.+.. .+.++.+.||+.++.-....+++...+..+
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 46677777766789999875 22221 123488999999998655555555555443
No 228
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=46.03 E-value=1.1e+02 Score=28.62 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcCCCceE-EEEeCCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 55 RAITALKMLRENRNNFDL-VISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDL-VIlDi~MPdm---dGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+..+..+.+.+. ..|. .+.|...... ..+++++.++...++|||+-.+..+.+.+.++++.||+..+.=
T Consensus 31 d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 445555555443 2554 4455432221 2355667777677899999989899999999999999988763
No 229
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=45.88 E-value=78 Score=32.02 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 25 RVLAVDDDQTCLKILEKFLR----ECQY-E-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~----~~gy-~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
-|||-|.+-...-.+...++ ..+. . .+.+.+.+++.+++.. ..|+|.+|-. +--++-+.++....-.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----SLEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----CHHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhCCCC
Confidence 36777766443322333332 2332 2 3478899999888874 3899999973 3333333333211234
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.|..|+.-+.+.+.+..+.|++.|-+
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~isv 302 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYISV 302 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEEC
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 66788999999999999999976643
No 230
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=45.24 E-value=35 Score=28.48 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCC
Q 009824 21 PIGMRVLAVDDD----QTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM 95 (524)
Q Consensus 21 p~~irVLIVDDd----p~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~ 95 (524)
|+.|+||+|=+. ......+++.+.+.|+++. .+.+..++-..+ .++|+||+-..+... ++-++..-...
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 556888887543 2566778888887777543 333333333322 348999998766543 33222221224
Q ss_pred CCcEEEEec
Q 009824 96 DLPVVMLSA 104 (524)
Q Consensus 96 diPVIvlTa 104 (524)
++||+++..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 689998875
No 231
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=45.24 E-value=13 Score=34.16 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=33.2
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 24 MR-VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 24 ir-VLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
|| |+|||........+.++|++.|+++..+...+..++.+... .+|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 46 99999777766778889999999887665432123333322 2787776
No 232
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=44.45 E-value=1.4e+02 Score=30.35 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+|+|++-...+... .++.| ..+++.+ +.++|..++..++.
T Consensus 319 ~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp TTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 5689987733333332 35677 5777766 89999999988875
No 233
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=44.24 E-value=75 Score=32.55 Aligned_cols=107 Identities=13% Similarity=0.166 Sum_probs=71.7
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEEEE--CCHHHHHHHHHhcCCCc----eEEEEeCCCCC
Q 009824 24 MRVLAVDD--DQ------------TCLKILEKFLRECQY--EVTVT--NRAITALKMLRENRNNF----DLVISDVYMPD 81 (524)
Q Consensus 24 irVLIVDD--dp------------~~~~~L~~~L~~~gy--~V~~a--~sg~eALe~L~e~~~~p----DLVIlDi~MPd 81 (524)
++++|+.+ .+ .....++.+.++.+. .|... -+.++..+.+.. . |++++=..- +
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~-E 369 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFY-E 369 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSC-B
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECccc-C
Confidence 46788887 22 116778888877654 25433 335666677654 5 888864332 3
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 82 mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.-|+.+++.+. ..+|||... .. ...+.+..|.++++..|-+.++|..++..++.
T Consensus 370 g~~~~~lEAma--~G~PvI~s~-~~---g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 370 PFGLAPVEAMA--SGLPAVVTR-NG---GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp CCCSHHHHHHH--TTCCEEEES-SB---HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHH--cCCCEEEec-CC---CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 44667777764 357888653 22 34566777889999999999999999988874
No 234
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=44.14 E-value=47 Score=31.13 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHhCCCeEE-EE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHhcCC-CCcEEEEecCCCHHHH
Q 009824 43 LRECQYEVT-VT--NRAITALKMLRENRNNFDLVISDVYMPDMD-------GFKLLELVGLEM-DLPVVMLSAYSDTKLV 111 (524)
Q Consensus 43 L~~~gy~V~-~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmd-------GleLLe~Lr~~~-diPVIvlTa~~d~~~~ 111 (524)
+++.|..+. .+ .+..+.++.+.......|.|+++-..|+.. +++.++.++... ++||++.-+-.. +.+
T Consensus 109 i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni 187 (228)
T 1h1y_A 109 IKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STI 187 (228)
T ss_dssp HHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTH
T ss_pred HHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHH
Confidence 344466554 33 233345554443100379999998888643 355556665433 788776665554 678
Q ss_pred HHHHhcCCcEEEe
Q 009824 112 MKGINHGACDYLL 124 (524)
Q Consensus 112 ~~al~~GA~dYL~ 124 (524)
.+++++||+.++.
T Consensus 188 ~~~~~aGaD~vvv 200 (228)
T 1h1y_A 188 DVAASAGANCIVA 200 (228)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 8888899999876
No 235
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=43.94 E-value=59 Score=30.62 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=62.6
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC----CC-CCHHHHHHHH-h--cCCCCcEEEEecCCCH
Q 009824 39 LEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYM----PD-MDGFKLLELV-G--LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 39 L~~~L~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVIlDi~M----Pd-mdGleLLe~L-r--~~~diPVIvlTa~~d~ 108 (524)
.-..|+..|+.+.. +..+...+..+..-+ +|.|=+|..+ .. .....+++.+ . ...++.| +..+-.+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~v-iaeGVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV-VAEGVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEE-EECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeE-EEEeCCCH
Confidence 33456677998764 456667777887655 9999999633 22 2233344433 2 2345554 46777888
Q ss_pred HHHHHHHhcCCcE----EEeCCCCHHHHHHHHHH
Q 009824 109 KLVMKGINHGACD----YLLKPVRMEELKNTWQH 138 (524)
Q Consensus 109 ~~~~~al~~GA~d----YL~KP~~~eeL~~aI~~ 138 (524)
+....+.+.|++. |+.||...+++...+..
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 8888888999875 37799999998776653
No 236
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=43.92 E-value=15 Score=29.89 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhc
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDG 272 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~ig 272 (524)
+|+.++ ..++|.+||+-++.+...|+......+..+|+ .+...++.+|...|
T Consensus 34 ~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~g 86 (95)
T 3c57_A 34 TLLGLL-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELK 86 (95)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC---------
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 455555 57777777777776666666666667777777 34455666665443
No 237
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=43.61 E-value=1.6e+02 Score=29.08 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=61.2
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCC--eEEEEC-----CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 23 GMRVLAVDDD----QTCLKILEKFLRECQY--EVTVTN-----RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 23 ~irVLIVDDd----p~~~~~L~~~L~~~gy--~V~~a~-----sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
.++++||.+. +.....++.+.+..+. .|.... +.++..+.+.. .|++++-..- +.-|+.+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 3566666665 2334445554444332 343321 12344444432 4666653322 33466677766
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 92 r~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
. ..+|||..- . ....+.+..|..+++.. +.++|..++..++.
T Consensus 337 a--~G~PvI~~~-~---~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGRA-V---GGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEES-C---HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEcc-C---CCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 4 357887642 2 34556677788999996 89999999988875
No 238
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=43.53 E-value=1.1e+02 Score=29.95 Aligned_cols=105 Identities=11% Similarity=0.201 Sum_probs=59.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
++||.||.--..-...+..+.+..+++++ .+....+..+.+.+..+ +. +..|+ -+.+. .+++-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g-~~-~~~~~----------~~~l~-~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANG-AE-AVASP----------DEVFA-RDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTT-CE-EESSH----------HHHTT-CSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC-Cc-eeCCH----------HHHhc-CCCCCEEE
Confidence 58899998876655555554444478877 44444444444433211 11 12121 12232 23344444
Q ss_pred Ee--cCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHH
Q 009824 102 LS--AYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVI 140 (524)
Q Consensus 102 lT--a~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vl 140 (524)
++ .....+.+..++++|..=++.||+ +.++....++.+-
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 113 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG 113 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 43 334456788899999999999994 5667666665543
No 239
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=43.38 E-value=1.1e+02 Score=32.89 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCceEEE-EeCCCCCC-C--HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh-cCCcEEEe------
Q 009824 56 AITALKMLRENRNNFDLVI-SDVYMPDM-D--GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGIN-HGACDYLL------ 124 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVI-lDi~MPdm-d--GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~-~GA~dYL~------ 124 (524)
..+..+.+.+. .++.|+ .|+.-.++ . -+++++.++...++|||.-.+-.+.+.+.++++ .||++.+.
T Consensus 454 ~~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEAL--GAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHHT--TCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 34444444443 255544 45532222 2 377888887667899999888999999999998 79999876
Q ss_pred CCCCHHHHHHHH
Q 009824 125 KPVRMEELKNTW 136 (524)
Q Consensus 125 KP~~~eeL~~aI 136 (524)
.++...+++..+
T Consensus 532 ~~~~~~e~~~~l 543 (555)
T 1jvn_A 532 GEFTVNDVKEYL 543 (555)
T ss_dssp TSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 367777776643
No 240
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=42.54 E-value=1.2e+02 Score=30.11 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=59.2
Q ss_pred CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhcCCCCcEEEEecCCCH-------------HHH
Q 009824 47 QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGLEMDLPVVMLSAYSDT-------------KLV 111 (524)
Q Consensus 47 gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~Lr~~~diPVIvlTa~~d~-------------~~~ 111 (524)
.+.+. ++.+.+.+..+.+...+.+.|. .++..++. -+..+++.++...++||.+|--..+. +.+
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI 117 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADI 117 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHH
Confidence 45555 6788899988877654233322 22233443 47888988877778999877655444 567
Q ss_pred HHHHhcCCcEEEeC---C---CCHHHHHHHHHH
Q 009824 112 MKGINHGACDYLLK---P---VRMEELKNTWQH 138 (524)
Q Consensus 112 ~~al~~GA~dYL~K---P---~~~eeL~~aI~~ 138 (524)
..+.++||++++.= | ++.+.+...+..
T Consensus 118 ~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 118 RLAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 78889999999875 3 455555555554
No 241
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=41.86 E-value=82 Score=24.98 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=50.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
+++|+|+.- -.+-..+...|...| ++|+.+....+.++.+... ....+..|+.- --++.+.++ ..-+|+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~~----~~~~~~~~~---~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAKD----EAGLAKALG---GFDAVI 74 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTTC----HHHHHHHTT---TCSEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCCC----HHHHHHHHc---CCCEEE
Confidence 478999988 666666666676778 8888665555555555432 35666666532 222333333 233444
Q ss_pred EecC--CCHHHHHHHHhcCCcEE
Q 009824 102 LSAY--SDTKLVMKGINHGACDY 122 (524)
Q Consensus 102 lTa~--~d~~~~~~al~~GA~dY 122 (524)
.+.. ........+.+.|+.-|
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCchhhHHHHHHHHHhCCCEE
Confidence 4432 22334555556776544
No 242
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=41.58 E-value=2.1e+02 Score=27.32 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=59.0
Q ss_pred HHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHH
Q 009824 39 LEKFLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKG 114 (524)
Q Consensus 39 L~~~L~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~a 114 (524)
+++.|+.-...+ .......+.++.+... .+|.|++|+.=.-.+--++...++ .....++++-+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 555665422222 2223444455555433 499999998543222223333332 2245789999999999999999
Q ss_pred HhcCCcEEEeC-CCCHHHHHHHHHH
Q 009824 115 INHGACDYLLK-PVRMEELKNTWQH 138 (524)
Q Consensus 115 l~~GA~dYL~K-P~~~eeL~~aI~~ 138 (524)
++.|++..+.- --+.+++..+++.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 99999886552 2467777555443
No 243
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=41.25 E-value=2.4e+02 Score=28.01 Aligned_cols=88 Identities=19% Similarity=0.084 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCeEEE--E---CCHHHHHHHHHhcCCCceEEEEeCC--------------------C-CCCCHHHHH
Q 009824 35 CLKILEKFLRECQYEVTV--T---NRAITALKMLRENRNNFDLVISDVY--------------------M-PDMDGFKLL 88 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~--a---~sg~eALe~L~e~~~~pDLVIlDi~--------------------M-PdmdGleLL 88 (524)
..+.++.+-+..+..|.. + .+.+++..+.+. ..|.|++.-+ + -+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 345555554444555442 3 456666555443 3787777421 1 134566666
Q ss_pred HHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 89 ELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 89 e~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
..++.. .++|||...+-.+.+.+.+++.+||+...+=
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 666433 5899999999999999999999999998763
No 244
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.99 E-value=67 Score=28.86 Aligned_cols=60 Identities=13% Similarity=0.287 Sum_probs=33.8
Q ss_pred CCCCCccEE--EEEeCC------------HHHHHHHHHHHHhCCCeEE---EECCHHHHH-HHHHh--cCCCceEEEEeC
Q 009824 18 DKFPIGMRV--LAVDDD------------QTCLKILEKFLRECQYEVT---VTNRAITAL-KMLRE--NRNNFDLVISDV 77 (524)
Q Consensus 18 ~~~p~~irV--LIVDDd------------p~~~~~L~~~L~~~gy~V~---~a~sg~eAL-e~L~e--~~~~pDLVIlDi 77 (524)
.+.|..+|| +.|.|. ..+...|..+|++.|++|. .+.|..+.+ +.+.+ ....+|+||+-=
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 445666665 444452 3455678999999999876 445543333 33332 123578888743
No 245
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=40.85 E-value=48 Score=30.22 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..++...+.. .+|+|-..-. ..-|++.++.++.. +++||+...+-. .+.+.+++++||+.+..
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 56666666543 3676654321 12377888877644 389988877765 56888999999998765
No 246
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=40.74 E-value=1e+02 Score=30.07 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.++++.++...++||++=.+-.+++.+.++ .||+..++=
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 477888877778999988888889999885 999999873
No 247
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.47 E-value=19 Score=28.75 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=28.6
Q ss_pred HHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhcc
Q 009824 221 ILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDGF 273 (524)
Q Consensus 221 IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~igl 273 (524)
|+.++ ..++|.+||+-.+.+...|+......+..+|+ .+...++.+|...|+
T Consensus 37 vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~gl 89 (91)
T 2rnj_A 37 ILLLI-AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 89 (91)
T ss_dssp HHHHH-HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHTC
T ss_pred HHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 44333 35566666655555555555445556666666 344566666655443
No 248
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=40.44 E-value=66 Score=32.25 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=56.5
Q ss_pred EEEEeCCHHHHHHHHHHHH----hC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 26 VLAVDDDQTCLKILEKFLR----EC-QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~----~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
|||=|.+-...-.+...++ .. ...| +.+.+.+|+.++++. ..|+|.+|-.-| -++-+.++....-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~----~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSI----SEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHhhcCceE
Confidence 6666655443322333332 22 2233 378899999999875 389999996333 233333322112356
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEE
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL 123 (524)
|..|+.-+.+.+.+..+.|++.+-
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 778898888889888899997664
No 249
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=40.43 E-value=26 Score=32.04 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcC-CCCcEEE--EecCCC-HH-HHHHHHhcCCcEEEeCCC
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGLE-MDLPVVM--LSAYSD-TK-LVMKGINHGACDYLLKPV 127 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~Lr~~-~diPVIv--lTa~~d-~~-~~~~al~~GA~dYL~KP~ 127 (524)
+.+++++.++......| ++++.+|- .+|.++++.++.. ++.||++ .+. + .+ .+..+.++||+....-+.
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~--di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTM--DAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEEC--SCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEec--CccHHHHHHHHhCCCCEEEEecc
Confidence 45566666554321123 35665542 3567778877644 4788875 433 4 34 477888999999887775
Q ss_pred CH-HHHHHHHHHH
Q 009824 128 RM-EELKNTWQHV 139 (524)
Q Consensus 128 ~~-eeL~~aI~~v 139 (524)
.. +.+..+++.+
T Consensus 87 ~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 87 ADDSTIAGAVKAA 99 (207)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 54 4444444433
No 250
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=40.28 E-value=45 Score=31.59 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=52.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCC---C-CCC-CHHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEEEeCCC
Q 009824 55 RAITALKMLRENRNNFDLVISDVY---M-PDM-DGFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLLKPV 127 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~---M-Pdm-dGleLLe~Lr~~~diPVI--vlTa~~d~~~~~~al~~GA~dYL~KP~ 127 (524)
+-.+.++.+.+. ..|++=+|+. . |.. .|+++++.++...+.|+. +++... ...+..+.++||+.+..-..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcc
Confidence 344555655543 3677766662 1 232 377999999866667776 677432 34678888999999877655
Q ss_pred --CHHHHHHHHHHHH
Q 009824 128 --RMEELKNTWQHVI 140 (524)
Q Consensus 128 --~~eeL~~aI~~vl 140 (524)
..++....++.+.
T Consensus 95 ~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 95 HNASPHLHRTLCQIR 109 (230)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred cccchhHHHHHHHHH
Confidence 4445555555553
No 251
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=40.24 E-value=2.3e+02 Score=27.35 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=58.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
+||.||.--..-...+..+.+..+++++ .+....+..+.+.+... ..-+..| - -+.+ .+++-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~-------~---~~~l--~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ-NIQLFDQ-------L---EVFF--KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGSS-SCEEESC-------H---HHHH--TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC-CCeEeCC-------H---HHHh--CCCCCEEEE
Confidence 6788888766555555554443467766 44433333333333211 1112222 1 1223 234445544
Q ss_pred ecC--CCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 103 SAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 103 Ta~--~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
+.. ...+.+.+++++|..=|+.||+ +.++....++.+-+
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 111 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEK 111 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 443 3456788899999999999996 66776666665543
No 252
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=39.81 E-value=90 Score=31.07 Aligned_cols=92 Identities=11% Similarity=0.015 Sum_probs=54.7
Q ss_pred EEEEeCCHHHHHHHHHHHH---hC--CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 26 VLAVDDDQTCLKILEKFLR---EC--QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~---~~--gy~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
|||-|.|-...-.+...++ +. ...+ +.+.+.+|+.++++. ..|+|.+|-.-| -++-+.++....-..
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ 244 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVA 244 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCE
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCce
Confidence 6666665433322333322 21 2233 378899999998874 389999997433 222223322112345
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
|..|+.-+.+.+.+..+.|++.+-+
T Consensus 245 ieaSGGIt~~~i~~~a~tGVD~Isv 269 (287)
T 3tqv_A 245 LEVSGNIDRNSIVAIAKTGVDFISV 269 (287)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 6688888888898988999977643
No 253
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=39.80 E-value=1.2e+02 Score=29.01 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=40.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy-~V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
...+|..+|=++...+.++..+++.|. .|. ...++.+....+......+|+|++|.
T Consensus 107 ~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 107 NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 336899999999999999999988776 344 45677665443321224599999994
No 254
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=39.62 E-value=42 Score=34.56 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eEE-EECCHHHHHHHHHhcCCCceEEEEeCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQ---Y------EVT-VTNRAITALKMLRENRNNFDLVISDVYM 79 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~g---y------~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~M 79 (524)
-+|.+||=++.+.+..++.+.... + ++. ...++.+.++.+.+....||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 689999999999999999875321 1 243 5678888877653223469999999854
No 255
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.54 E-value=14 Score=26.92 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=21.2
Q ss_pred CCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhh
Q 009824 228 EGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGAL 270 (524)
Q Consensus 228 ~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~ 270 (524)
.++|.+||+-.+.+...|+......+..+|+ .+...++.+|..
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~~~~~ 55 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARR 55 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4455555544444444444444445555665 334455555543
No 256
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=39.47 E-value=98 Score=30.50 Aligned_cols=106 Identities=9% Similarity=0.066 Sum_probs=66.2
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCe--------EEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 009824 24 MRVLAVDDDQT-----CLKILEKFLRECQYE--------VTVT---NRAITALKMLRENRNNFDLVISDVYMPDMDGFKL 87 (524)
Q Consensus 24 irVLIVDDdp~-----~~~~L~~~L~~~gy~--------V~~a---~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleL 87 (524)
++++||.+.+. ....+++++++.|.. ++.. -+.++..+.+.. .|++++-.. -+.-|+.+
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~ 290 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLCS 290 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcHH
Confidence 56676765543 345666666665543 2322 235566666653 578777333 23446777
Q ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCc---------------EE--EeCCCCHHHHHHHHHHHHH
Q 009824 88 LELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC---------------DY--LLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 88 Le~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~---------------dY--L~KP~~~eeL~~aI~~vlr 141 (524)
++.+. ..+|||.. . .....+.+..|.. ++ +..|-+.++|..++ .++.
T Consensus 291 lEAma--~G~PvI~s-~---~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 291 AEGAV--LGKPLIIS-A---VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHT--TTCCEEEE-C---CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHH--cCCCEEEc-C---CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 78764 45788863 2 2245566666776 88 99999999999999 8764
No 257
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=39.19 E-value=35 Score=33.51 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCCCcEEEEecC------CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 85 FKLLELVGLEMDLPVVMLSAY------SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~------~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
+++++.+|...++|||+++-. .-...+..+.++|+++++.--+..+++...+..+
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 466677766678999998522 2234566788999999999767666665555444
No 258
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=38.96 E-value=1.1e+02 Score=25.89 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
.+|..||=++...+..+..+...+..+. ...+..+.+..+......+|+|++|.... .+--++++.+
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~ 131 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGEL 131 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHH
Confidence 3599999999999999988876654444 34566665544443223599999995332 2223444444
No 259
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=38.86 E-value=55 Score=34.23 Aligned_cols=9 Identities=22% Similarity=0.623 Sum_probs=8.2
Q ss_pred CceEEEEeC
Q 009824 69 NFDLVISDV 77 (524)
Q Consensus 69 ~pDLVIlDi 77 (524)
.+|+||+|.
T Consensus 183 ~~D~VIIDT 191 (433)
T 2xxa_A 183 FYDVLLVDT 191 (433)
T ss_dssp TCSEEEEEC
T ss_pred CCCEEEEEC
Confidence 499999999
No 260
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=38.73 E-value=1.2e+02 Score=27.87 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=43.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc------------C-CCceEEEEeCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN------------R-NNFDLVISDVYM 79 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy~--V~-~a~sg~eALe~L~e~------------~-~~pDLVIlDi~M 79 (524)
+|.+.+|..||-++...+..+..++..|+. |. ...++.+.+..+... . ..+|+|++|...
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~ 157 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK 157 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH
Confidence 444578999999999999999999887652 44 556777765544321 1 359999999653
No 261
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=38.53 E-value=83 Score=28.89 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=28.0
Q ss_pred CCCCCccEEEEEeCCH--HHHHHHHHHHHhCCCeEEEE
Q 009824 18 DKFPIGMRVLAVDDDQ--TCLKILEKFLRECQYEVTVT 53 (524)
Q Consensus 18 ~~~p~~irVLIVDDdp--~~~~~L~~~L~~~gy~V~~a 53 (524)
.+-|..|||.|--|+. ...+.|..+|++.||+|+-+
T Consensus 16 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 16 TQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp ---CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 4567779999999997 45678999999999999854
No 262
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=38.42 E-value=49 Score=34.29 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=54.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVI 100 (524)
++.|+|||.++...+.++ ..|+.|+... +-.+.|+.+. -...|+||+-+.- +..-+.++..++ ..++++||
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~ag--i~~A~~viv~~~~-~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAG--AAKAEVLINAIDD-PQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTT--TTTCSEEEECCSS-HHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcC--CCccCEEEECCCC-hHHHHHHHHHHHHhCCCCeEE
Confidence 466888888877655443 4566654322 1233344332 2347888875521 112333444444 46788888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+.+.. ........++||+..+.-
T Consensus 100 ara~~--~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 100 ARARD--VDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp EEESS--HHHHHHHHHTTCSSCEET
T ss_pred EEECC--HHHHHHHHHCCCCEEECc
Confidence 77654 456667778999987753
No 263
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=38.30 E-value=2.2e+02 Score=28.06 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred ccEEEEEeCCHHHHH-HHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 23 GMRVLAVDDDQTCLK-ILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~-~L~~~L~~~gy~V~-~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
++||.||.--..-.. .+..+.+..+++++ .+. +.+.+.+..++.. +..+ .|+ -+.+. .+++-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~----------~~ll~-~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY----------PALLE-RDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH----------HHHHT-CTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH----------HHHhc-CCCCCE
Confidence 489999998776663 44444443478876 333 4444444433321 2222 332 23332 233444
Q ss_pred EEEe--cCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 100 VMLS--AYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 100 IvlT--a~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
|+++ .....+.+..++++|..=++-||+ +.++....++.+.+.
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4443 334456788999999999999995 667777777665443
No 264
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.69 E-value=31 Score=26.29 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=33.3
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhc
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDG 272 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~ig 272 (524)
+|+.++ ..++|.+||+-.+.+...++......+..+|+ .+...++.++...|
T Consensus 23 ~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~~~~g 75 (79)
T 1x3u_A 23 QVLSAV-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGG 75 (79)
T ss_dssp HHHHHH-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 466555 57777777776666666665555566777776 34456667665544
No 265
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=37.63 E-value=75 Score=33.03 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMDG-FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdG-leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.++.+.+.. +|+|++|..-..... .++++.++...++|||+= .-...+.+..+.++||+....
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 45555555443 999999976533222 567777776557888862 224577888999999999887
No 266
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=37.63 E-value=1.9e+02 Score=24.75 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=45.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
.+|..||-++...+..+..+...+. .+. ...+..+.+..+......+|+|++|...-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999999998877664 244 4567776555443223469999998542233444555554
No 267
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=37.29 E-value=53 Score=31.31 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=53.2
Q ss_pred HHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhcC-CCCcEEEEecCCCHHH
Q 009824 42 FLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMPDMDG-------FKLLELVGLE-MDLPVVMLSAYSDTKL 110 (524)
Q Consensus 42 ~L~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVIlDi~MPdmdG-------leLLe~Lr~~-~diPVIvlTa~~d~~~ 110 (524)
.+++.|.++-.+- +..+.++.+... +.+|+|++=-.-|+..| ++-++.++.. .+++ |.+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 6667788766443 334445544331 14899988777787665 4444555432 2554 45667777889
Q ss_pred HHHHHhcCCcEEEeC
Q 009824 111 VMKGINHGACDYLLK 125 (524)
Q Consensus 111 ~~~al~~GA~dYL~K 125 (524)
+..+.++||+-++.=
T Consensus 187 i~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 187 TEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999998763
No 268
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=37.20 E-value=1.3e+02 Score=30.00 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=45.3
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 009824 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (524)
Q Consensus 51 ~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dY 122 (524)
+.+.+.+++.+++.. ..|+|.+|-. +--++-+.++....-..|..|+.-+.+.+.+..+.|++.+
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn~----~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDNF----TLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEESC----CHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 368889998888874 3899999973 3333333333222234567888888888999999999665
No 269
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=37.20 E-value=55 Score=32.62 Aligned_cols=56 Identities=11% Similarity=0.018 Sum_probs=46.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~--diPVIvlTa~~d~~~~~~al~~GA~dYL~KP 126 (524)
.++|.+|+.- ..-..++++.++... ++||++=-+-.+.+.+.+++++||+..++--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 5799999754 334468888886555 8999999999999999999999999998865
No 270
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=36.94 E-value=38 Score=31.58 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=36.9
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcC-----CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 69 NFDLVISDVYMPDMDG-------FKLLELVGLE-----MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLLe~Lr~~-----~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..|.|+++-..|+..| ++.++.++.. .++||++.-+-. .+.+.+++++||+.+++
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 3688888887775533 4445555432 267877655554 67777888999998876
No 271
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=36.65 E-value=1.2e+02 Score=31.01 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=49.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 009824 24 MRVLAVDDDQTCLKILEKFLREC---------------QYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK 86 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~---------------gy~-V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGle 86 (524)
.+|+.+|=++...+.+++-++.. +.. +. ...++.+.+... ...||+|++|- | ....+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~-~~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--F-GSPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--S-SCCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--C-CCHHH
Confidence 57999999999999999988876 654 44 456776665433 23599999884 3 33345
Q ss_pred HHHHH-hcCCCCcEEEEecC
Q 009824 87 LLELV-GLEMDLPVVMLSAY 105 (524)
Q Consensus 87 LLe~L-r~~~diPVIvlTa~ 105 (524)
+++.. +.-..-.+|++|..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 55432 32222236667653
No 272
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=36.64 E-value=80 Score=29.56 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=37.0
Q ss_pred HHHHHHHHhcC--CCceEEEEeCCCC----C-CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009824 57 ITALKMLRENR--NNFDLVISDVYMP----D-MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (524)
Q Consensus 57 ~eALe~L~e~~--~~pDLVIlDi~MP----d-mdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~a 114 (524)
..+++.+.+.- ..+||||+|=-.. + .+--++++.+...+.---|++|+...+....+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 33444444432 4699999996432 2 345567788876666666778888777766554
No 273
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=36.60 E-value=58 Score=34.15 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=63.9
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEEE---EC-------------------------CHHHHHHHHHhcCCCceEEEEeCCC
Q 009824 30 DDDQTCLKILEKFLRECQY--EVTV---TN-------------------------RAITALKMLRENRNNFDLVISDVYM 79 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy--~V~~---a~-------------------------sg~eALe~L~e~~~~pDLVIlDi~M 79 (524)
+++....+.+++.++..|| +|.. +. +..++++.+.+.-.+++++.+.==+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4566677788888876676 3331 10 4577766544321237888886655
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEEE-eCCC---CHHHHHHHHHHH
Q 009824 80 PDMDGFKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDYL-LKPV---RMEELKNTWQHV 139 (524)
Q Consensus 80 PdmdGleLLe~Lr~~~diPVIvlTa~---~d~~~~~~al~~GA~dYL-~KP~---~~eeL~~aI~~v 139 (524)
+..| ++-.+.++....+||+ ... .+.....++++.|++++| .|+- ...+.+.++..+
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA 362 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDS 362 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHH
Confidence 5444 4445555544567774 444 357889999999977765 5664 344444444433
No 274
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=36.58 E-value=85 Score=31.06 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHH----HHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCc
Q 009824 26 VLAVDDDQTCLK----ILEKFLRECQ--YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLP 98 (524)
Q Consensus 26 VLIVDDdp~~~~----~L~~~L~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diP 98 (524)
|||-|++-...- .++..-+..+ .-.+.+.+.+++.++++. ..|+|.+|-.-|+ +-.+.++.++. .+++
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~-~~~~~v~~l~~~~~~v- 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW-QTQTAVQRRDSRAPTV- 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH-HHHHHHHHHHHHCTTC-
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccCCCe-
Confidence 677776644322 2333222233 223367788999888764 3899999984331 11123344432 2343
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.|..|+.-+.+.+.+..+.|++.|.+
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 56678888888899999999887754
No 275
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=36.41 E-value=20 Score=34.02 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=33.7
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhcc
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDGF 273 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~igl 273 (524)
+||.++. .|+|.+||+-++.++..|+..+..+++.+|+ .+...++.+|...|+
T Consensus 182 ~vl~~~~-~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~gl 235 (237)
T 3szt_A 182 EMLKWTA-VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGL 235 (237)
T ss_dssp HHHHHHH-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTC
T ss_pred HHHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCC
Confidence 4555553 6777777776676666666666667777777 344456666665544
No 276
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=36.34 E-value=1.4e+02 Score=30.76 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hcCCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALK-MLRENRNNFDLVISDVYMPDMDGFKLLELV-GLEMDL 97 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~---V~-~a~sg~eALe-~L~e~~~~pDLVIlDi~MPdmdGleLLe~L-r~~~di 97 (524)
-+|..||-++...+.+++-++..+.+ +. ...++.+.+. .+ ...||+|++|- ++.. .++++.. +.-..-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGTP-VPFIESVALSMKRG 151 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSCC-HHHHHHHHHHEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcCH-HHHHHHHHHHhCCC
Confidence 46999999999999999999987763 54 4456665543 22 23599999997 4332 2355432 311122
Q ss_pred cEEEEecCC
Q 009824 98 PVVMLSAYS 106 (524)
Q Consensus 98 PVIvlTa~~ 106 (524)
-+|++|...
T Consensus 152 Gll~~t~t~ 160 (392)
T 3axs_A 152 GILSLTATD 160 (392)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecc
Confidence 367776643
No 277
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=36.18 E-value=2.1e+02 Score=27.92 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=64.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~d 96 (524)
+..+|||-||.--..-+.-....|+. .+++|+ .+. +.+.|-+..++.. +.-+..|+ -+.+. .++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~----------~ell~-~~~ 86 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY----------EEMLA-SDV 86 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH----------HHHHH-CSS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH----------HHHhc-CCC
Confidence 44568999999876665554555554 477877 444 3444444433321 22233332 12333 234
Q ss_pred CcEEEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 97 LPVVMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
+=+|+++. ..-.+.+.+|+++|..=|+-||+ +.++....++.+-+.
T Consensus 87 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 136 (350)
T 4had_A 87 IDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRN 136 (350)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHc
Confidence 44444443 33457789999999999999995 567777666655443
No 278
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=36.15 E-value=44 Score=30.61 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=33.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
+|+|||=-.-+...+.+.|++.|++++...+.++. . .+|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~----~~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----L----AADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----H----HCSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----h----CCCEEEE
Confidence 59999977777788999999999999988876543 2 1677776
No 279
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=36.01 E-value=1.5e+02 Score=28.72 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCeEEEECC-----HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 36 LKILEKFLRECQYEVTVTNR-----AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~a~s-----g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.+.+++.+++.||++..+.+ ..+.++.+.+. .+|.||+-- +... -.+.+..+..+++|+|++...
T Consensus 26 ~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~--~~dgIi~~~--~~~~-~~~~~~a~~~p~~p~v~id~~ 95 (318)
T 2fqx_A 26 WEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADE--NMGLVVACG--SFLV-EAVIETSARFPKQKFLVIDAV 95 (318)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHT--TCSEEEEES--TTTH-HHHHHHHHHCTTSCEEEESSC
T ss_pred HHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHc--CCCEEEECC--hhHH-HHHHHHHHHCCCCEEEEEcCc
Confidence 45666777788999875422 23456655544 489888731 1121 123333345678999999764
No 280
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=35.91 E-value=1.3e+02 Score=26.30 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=48.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc----CC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGL----EM 95 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy-~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLLe~Lr~----~~ 95 (524)
.+|..||=++...+..+..++..+. .+. ...+..+.+..+. ...+|+|++|.-.... +-.++++.+.. .+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~p 145 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAALGTNGWTRE 145 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHHHhcCccCC
Confidence 4799999999999999998887664 343 4567666544321 2459999998543321 23345554432 34
Q ss_pred CCcEEEEe
Q 009824 96 DLPVVMLS 103 (524)
Q Consensus 96 diPVIvlT 103 (524)
+-.+++-+
T Consensus 146 gG~l~~~~ 153 (189)
T 3p9n_A 146 GTVAVVER 153 (189)
T ss_dssp TCEEEEEE
T ss_pred CeEEEEEe
Confidence 44455444
No 281
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=35.84 E-value=2.2e+02 Score=27.88 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=60.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE--CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~--~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
..+||.||.--..........|.. .+++++ .+....+..+.+.+..+ ..-+..| +-+.+. .+++-
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~-~~~~~~~----------~~~ll~-~~~vD 84 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG-NPAVFDS----------YEELLE-SGLVD 84 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS-SCEEESC----------HHHHHH-SSCCS
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC-CCcccCC----------HHHHhc-CCCCC
Confidence 458999998773333333334444 367776 44433333333332211 1112222 122333 23344
Q ss_pred EEEEe--cCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 99 VVMLS--AYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 99 VIvlT--a~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
+|+++ ...-.+.+.+|+++|..=|+-||+ +.++....++.+-+
T Consensus 85 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 85 AVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44443 334457888999999999999996 67777777766544
No 282
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=35.82 E-value=1.6e+02 Score=26.39 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEC---------------CH----HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHH
Q 009824 32 DQTCLKILEKFLRECQYEVTVTN---------------RA----ITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELV 91 (524)
Q Consensus 32 dp~~~~~L~~~L~~~gy~V~~a~---------------sg----~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLLe~L 91 (524)
+....+.+...|++.| .|.... +. ..-+++++ ..|+||..+.-|+ ..++|+--..
T Consensus 17 ~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~----~aD~vvA~l~~~d~Gt~~EiG~A~ 91 (152)
T 4fyk_A 17 DQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQ----QADVVVAEVTQPSLGVGYELGRAV 91 (152)
T ss_dssp THHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHH----HCSEEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHH----HCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3345577788888877 553111 11 11223333 3799999888664 3566665443
Q ss_pred hcCCCCcEEEEecCC---CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 92 GLEMDLPVVMLSAYS---DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 92 r~~~diPVIvlTa~~---d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
. ...||+++.... ......++...| ..|-.+.+.-.+|..++...+.
T Consensus 92 a--lgkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 92 A--LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp H--TTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC
T ss_pred H--cCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHH
Confidence 3 367999876533 223344454433 4577777776888888877654
No 283
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=35.60 E-value=46 Score=30.44 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcC-CCCcEEE--EecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGLE-MDLPVVM--LSAYSDTKLVMKGINHGACDYLLKPVRM 129 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLLe~Lr~~-~diPVIv--lTa~~d~~~~~~al~~GA~dYL~KP~~~ 129 (524)
+.+++++.++.....+|+|=.- +|- ..|+++++.++.. +++||.+ ++.+.....+..+.++||+..+.--...
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G--~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVG--TPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEC--HHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEEEeC--cHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 3445555444322234543322 243 3577888888754 6788753 2233333338888999999988854443
Q ss_pred -HHHHHHHHHH
Q 009824 130 -EELKNTWQHV 139 (524)
Q Consensus 130 -eeL~~aI~~v 139 (524)
+.+...++.+
T Consensus 89 ~~~~~~~~~~~ 99 (211)
T 3f4w_A 89 VLTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 3344444443
No 284
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=35.51 E-value=62 Score=31.81 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=44.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 70 pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.|++++-.. .+.-|+.+++.+. ..+|||.... .. ..+.++.|-.+++..|-+.++|..++..++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~-~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRV-GG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECC-TT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecC-CC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 467776433 2334667777764 3578876543 22 2344566788999999999999999998875
No 285
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=35.51 E-value=1.9e+02 Score=28.54 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=61.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
.++||.||.--..-...+..+.+. .+++++ .+....+..+.+.+. +.+-..+ |--++ +.. +++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~~------~~~~l---l~~-~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGHA------SLTDM---LAQ-TDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEES------CHHHH---HHH-CCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCceeC------CHHHH---hcC-CCCCE
Confidence 358999999876666666555554 478877 444333433333322 2222221 11223 321 33444
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 100 IvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
|+++. ....+.+.+++++|..=++.||+ +.++....++.+.+
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 44433 33456788899999999999995 56777666665544
No 286
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=35.13 E-value=1.4e+02 Score=27.57 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 36 LKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~a~s---g---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
...+++.+++.||.+..+.. . .+.++.+... .+|-||+--..+ -+.++.+. ...+|||++...
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~ 94 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHH-TTSSCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHH-HCCCCEEEEecc
Confidence 44556667778999886532 2 2345555543 488877754333 45566554 357899988654
No 287
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=35.10 E-value=1.7e+02 Score=29.86 Aligned_cols=85 Identities=14% Similarity=0.012 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhc--CCCCcEEEEecCCC
Q 009824 37 KILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGL--EMDLPVVMLSAYSD 107 (524)
Q Consensus 37 ~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLLe~Lr~--~~diPVIvlTa~~d 107 (524)
+.++.+-+..+..|. .+.+.++|..+.+. .+|.|++.-+-- +...++++..+.. ..++|||.-.+-.+
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~ 283 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRT 283 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCS
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 445554444454443 56788888777653 388888743211 1235677765532 34799999999999
Q ss_pred HHHHHHHHhcCCcEEEe
Q 009824 108 TKLVMKGINHGACDYLL 124 (524)
Q Consensus 108 ~~~~~~al~~GA~dYL~ 124 (524)
...+.+++.+||+...+
T Consensus 284 g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 284 GTDVLKALALGARCIFL 300 (352)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999766
No 288
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=35.05 E-value=71 Score=31.40 Aligned_cols=73 Identities=27% Similarity=0.256 Sum_probs=0.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECC-------------------------------------------
Q 009824 23 GMRVLAVD----DDQTCLKILEKFLRECQYEVTVTNR------------------------------------------- 55 (524)
Q Consensus 23 ~irVLIVD----Ddp~~~~~L~~~L~~~gy~V~~a~s------------------------------------------- 55 (524)
.||||++- .+-.-...|...|++.|++|+.+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 56 ----------------------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 56 ----------------------g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
..+..+.+++.+ ||+|++|. +...|.-+.+.++ +|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--PD~Vv~~~--~~~~~~~aa~~~g----iP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR--PSVLLVDV--CALIGRVLGGLLD----LPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCHHHHHHHHHTT----CCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC--CCEEEeCc--chhHHHHHHHHhC----CCEEEEe
No 289
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=34.57 E-value=62 Score=33.98 Aligned_cols=107 Identities=11% Similarity=0.231 Sum_probs=62.8
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEEE---E-C-----------------------CHHHHHHHHHhcCCCceEEEEeCCCC
Q 009824 30 DDDQTCLKILEKFLRECQY--EVTV---T-N-----------------------RAITALKMLRENRNNFDLVISDVYMP 80 (524)
Q Consensus 30 DDdp~~~~~L~~~L~~~gy--~V~~---a-~-----------------------sg~eALe~L~e~~~~pDLVIlDi~MP 80 (524)
+++....+.+++.++..|| +|.. + . +..++++.+.+.-.+++++.+.==++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4566777788888876666 3321 1 1 45666665443212377888876555
Q ss_pred CCCHHHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEEE-eCCC---CHHHHHHHHHHH
Q 009824 81 DMDGFKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDYL-LKPV---RMEELKNTWQHV 139 (524)
Q Consensus 81 dmdGleLLe~Lr~~~diPVIvlTa~---~d~~~~~~al~~GA~dYL-~KP~---~~eeL~~aI~~v 139 (524)
..| ++-.+.++....+||+ ... .+.....++++.|++++| .|+- ...+.+.++..+
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~lA 359 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLA 359 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHH
Confidence 443 4444455444567774 444 367889999999977665 5764 344444444433
No 290
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=34.47 E-value=1.5e+02 Score=30.16 Aligned_cols=86 Identities=15% Similarity=0.009 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHhc-C-CCCcEEEEecCC
Q 009824 36 LKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYM----P-DMDGFKLLELVGL-E-MDLPVVMLSAYS 106 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~M----P-dmdGleLLe~Lr~-~-~diPVIvlTa~~ 106 (524)
.+.++.+-+..+..|. .+.+.+++..+++. .+|.|.+.-+- . +..-++++..++. . .++|||.-.+-.
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~ 290 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCC
T ss_pred HHHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3455555555566554 35677777666543 38888874321 1 1134566665643 2 379999999999
Q ss_pred CHHHHHHHHhcCCcEEEe
Q 009824 107 DTKLVMKGINHGACDYLL 124 (524)
Q Consensus 107 d~~~~~~al~~GA~dYL~ 124 (524)
+...+.+++.+||+...+
T Consensus 291 ~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFI 308 (370)
T ss_dssp SHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEee
Confidence 999999999999998866
No 291
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=34.47 E-value=1.7e+02 Score=28.79 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=59.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCc-eEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNF-DLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~p-DLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
+||.||.--..-...+..+.+. .+++++ .+....+..+.+.+.. .+ .-+..|+ -+.+. .+++-+|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-g~~~~~~~~~----------~~ll~-~~~~D~V 70 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-QLNATVYPND----------DSLLA-DENVDAV 70 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-TCCCEEESSH----------HHHHH-CTTCCEE
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-CCCCeeeCCH----------HHHhc-CCCCCEE
Confidence 6888888766555555555523 577776 4443334334333321 11 1222221 12233 2333344
Q ss_pred EEe--cCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 101 MLS--AYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlT--a~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
+++ .....+.+.+++++|..=++.||+ +.++....++.+.+.
T Consensus 71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 443 334456788899999999999995 567777777665443
No 292
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=34.39 E-value=61 Score=29.12 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCCccEEEEEeCCH-----H-HHHHHHHHHHhCCCeEEEEC---------------C----HHHHHHHHHhcCCCceEEE
Q 009824 20 FPIGMRVLAVDDDQ-----T-CLKILEKFLRECQYEVTVTN---------------R----AITALKMLRENRNNFDLVI 74 (524)
Q Consensus 20 ~p~~irVLIVDDdp-----~-~~~~L~~~L~~~gy~V~~a~---------------s----g~eALe~L~e~~~~pDLVI 74 (524)
.+..++|.|.-... . ..+.++..|++.| .|.... + ...-+++++ ..|+||
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~----~aD~vv 82 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQ----QADVVV 82 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHH----HCSEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHH----hCCEEE
Confidence 34568999985433 1 4577888888888 763100 1 122234443 379999
Q ss_pred EeCCCCC-CCHHHHHHHHhcCCCCcEEEEecCCC---HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 75 SDVYMPD-MDGFKLLELVGLEMDLPVVMLSAYSD---TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 75 lDi~MPd-mdGleLLe~Lr~~~diPVIvlTa~~d---~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
.++.-++ ..++|+--.. ....|||++....+ ......+...+ ..|-.+.++.++|...+...++..
T Consensus 83 a~~~~~d~Gt~~EiGyA~--algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 83 AEVTQPSLGVGYELGRAV--ALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp EECSSCCHHHHHHHHHHH--HTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHTS
T ss_pred EECCCCCCCHHHHHHHHH--HCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHhc
Confidence 9886222 2244443322 34689999975542 11222222221 223343448889999998888754
No 293
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=33.88 E-value=76 Score=30.72 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=55.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC----CCC-CHHHHHHHHhcC-CCCcEEE-EecCCCHHHHHHHHhcCCcEEEeCCC
Q 009824 55 RAITALKMLRENRNNFDLVISDVYM----PDM-DGFKLLELVGLE-MDLPVVM-LSAYSDTKLVMKGINHGACDYLLKPV 127 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~M----Pdm-dGleLLe~Lr~~-~diPVIv-lTa~~d~~~~~~al~~GA~dYL~KP~ 127 (524)
+-.+.++.+.+. ..|.+=+|++- |.. -|.++++.+|.. +++|+.+ +--..-..++..+.++||+.+..-..
T Consensus 41 ~L~~~i~~l~~~--G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAA--GADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHc--CCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 346777777654 37777777753 333 388999988754 4788755 33333345777888999998887765
Q ss_pred CHHHHHHHHHHH
Q 009824 128 RMEELKNTWQHV 139 (524)
Q Consensus 128 ~~eeL~~aI~~v 139 (524)
..+++.+.++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 445666666655
No 294
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=33.40 E-value=88 Score=29.85 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=34.9
Q ss_pred CCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 009824 82 MDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQ 137 (524)
Q Consensus 82 mdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~ 137 (524)
-++++.++.++. .++ .+|-.-.-.+.+.+.+++++||.-.+..-++.+-+..+.+
T Consensus 49 ~~a~~~I~~l~~~~p~-~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~ 104 (217)
T 3lab_A 49 EAGLAAISAIKKAVPE-AIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQ 104 (217)
T ss_dssp TTHHHHHHHHHHHCTT-SEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHCCC-CeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHH
Confidence 456777776653 344 5555555667889999999999776664455443333333
No 295
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=33.29 E-value=1.4e+02 Score=29.11 Aligned_cols=106 Identities=8% Similarity=0.156 Sum_probs=59.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHH-HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFL-RECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L-~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
..+||.||.--..-...+..+. +..+++++ .+....+..+.+.+.. ..+-+..| +-+.+. .+++-+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~----------~~~~l~-~~~~D~ 74 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTN----------YKDMID-TENIDA 74 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESC----------HHHHHT-TSCCSE
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCC----------HHHHhc-CCCCCE
Confidence 4589999998665555555544 23477766 4444444444443321 12222222 122333 223444
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHH
Q 009824 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHV 139 (524)
Q Consensus 100 IvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~v 139 (524)
|+++. ....+.+.++++.|..=++.||+ +.++....++.+
T Consensus 75 V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred EEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 44443 33456788899999888899995 466665555544
No 296
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=33.20 E-value=1.3e+02 Score=30.06 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=60.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~s-g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
.++||.||.=-..-...+...|...+++++ .+.. .+.+-+...+.. .+ -+..|+ -+.+. .+++-+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-~~-~~~~~~----------~~ll~-~~~vD~ 91 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-DA-RRIATA----------EEILE-DENIGL 91 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-SC-CEESCH----------HHHHT-CTTCCE
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-CC-cccCCH----------HHHhc-CCCCCE
Confidence 358999998654433344445555788877 4443 333433333321 11 122221 12232 334444
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 100 IvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
|+++. ....+.+.+|+++|..=|+-||+ +.++....++.+-+
T Consensus 92 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 92 IVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred EEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44443 33456788999999999999995 66777776665533
No 297
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=33.08 E-value=2.1e+02 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=13.6
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
...||...... .......+.|++..+.
T Consensus 96 ~~~iia~~~~~--~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 96 DVYAIVRVSSP--KKKEEFEEAGANLVVL 122 (141)
T ss_dssp CCCEEEEESCG--GGHHHHHHTTCSEEEE
T ss_pred CceEEEEEcCh--hHHHHHHHcCCCEEEC
Confidence 44555544333 2344455677765444
No 298
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=32.99 E-value=1.2e+02 Score=30.23 Aligned_cols=109 Identities=10% Similarity=0.135 Sum_probs=62.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHhc-CCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGL-EMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLLe~Lr~-~~diP 98 (524)
++||.||.--..-...+..+.+. .+++++ .+....+..+.+.+.. .++ -+..| +-+.+.. ..++-
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-g~~~~~~~~----------~~~ll~~~~~D~V 91 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY-AIEAKDYND----------YHDLINDKDVEVV 91 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH-TCCCEEESS----------HHHHHHCTTCCEE
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh-CCCCeeeCC----------HHHHhcCCCCCEE
Confidence 47999999887766666666533 578877 3443333333332221 111 12222 1223332 23433
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
+|........+.+..++++|..=|+-||+ +.++....++.+.+.
T Consensus 92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 33333344556788999999999999995 677777777665544
No 299
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=32.90 E-value=2.3e+02 Score=27.91 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=57.6
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 26 VLAVDDDQTCLKILEKFL----RECQY--EV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L----~~~gy--~V-~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
+||.|||-.....+...+ +..+. .| +.+.+.+++.+++... .|.|.+|-.-|.. --+.++.++ .++|
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld~~~~~~-~k~av~~v~--~~ip 242 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLDNFPLEA-LREAVRRVG--GRVP 242 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEESCCHHH-HHHHHHHHT--TSSC
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEECCCCHHH-HHHHHHHhC--CCCe
Confidence 688888876543333332 33333 23 3678899998888643 7999999743311 011222332 3577
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
++. ++--+.+.+.+..+.|++.+-+
T Consensus 243 i~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 243 LEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp EEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred EEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 665 6667788999999999987754
No 300
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=32.87 E-value=1.1e+02 Score=30.84 Aligned_cols=42 Identities=10% Similarity=0.322 Sum_probs=28.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+|+|++-...+.. +.++.|+. +++.+ +.++|..++..++.
T Consensus 325 ~G~PvV~~~~~~~~~---e~v~~G~~-~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 325 LGKPVLVMRETTERP---EAVAAGTV-KLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp GTCCEEECCSSCSCH---HHHHHTSE-EECTT-CHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCcch---HHHHcCce-EEcCC-CHHHHHHHHHHHHc
Confidence 468999753444432 45677864 77655 78999999988875
No 301
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=32.84 E-value=47 Score=30.12 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=32.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA---ITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg---~eALe~L~e~~~~pDLVIl 75 (524)
++|+|||....+-..+.+.|++.|++++..... ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 479999966667778888888889988766543 3333333221 12456655
No 302
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=32.60 E-value=1.9e+02 Score=28.11 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=59.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
++||.||.--..-...+..+.+..+++++ .+....+..+.+.+. +.+-..| -- +.+. .+++-+|+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~~~-------~~---~~l~-~~~~D~V~ 68 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA---YGCEVRT-------ID---AIEA-AADIDAVV 68 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH---TTCEECC-------HH---HHHH-CTTCCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH---hCCCcCC-------HH---HHhc-CCCCCEEE
Confidence 37888888766555555544444578877 444334433433332 2221222 11 2232 23344444
Q ss_pred Ee--cCCCHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 009824 102 LS--AYSDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIR 141 (524)
Q Consensus 102 lT--a~~d~~~~~~al~~GA~dYL~KP--~~~eeL~~aI~~vlr 141 (524)
++ .....+.+..++++|..=|+.|| .+.++....++.+-+
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 43 33445678889999999999999 466777776665544
No 303
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=32.59 E-value=59 Score=31.43 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=53.3
Q ss_pred HHHHHHHH---hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-CCC-CCHHHHHHHH-hcCC----CCcEEEEecC
Q 009824 37 KILEKFLR---ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY-MPD-MDGFKLLELV-GLEM----DLPVVMLSAY 105 (524)
Q Consensus 37 ~~L~~~L~---~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~-MPd-mdGleLLe~L-r~~~----diPVIvlTa~ 105 (524)
..+++++. ..|..+. .+.+.+|+...+... .|+|=+... .-+ .-+++.++.+ +..+ ++|+|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~g---ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAG---AEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHT---CSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC---CCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 44555554 5688765 678888877666543 566644321 111 1123333333 2112 6899999999
Q ss_pred CCHHHHHHHHhcCCcEEEe
Q 009824 106 SDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 106 ~d~~~~~~al~~GA~dYL~ 124 (524)
.+.+.+.++.+ ||+.+++
T Consensus 218 ~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEE
T ss_pred CCHHHHHHHHc-CCCEEEE
Confidence 99999999999 9999987
No 304
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=32.45 E-value=62 Score=31.25 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC------HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMD------GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmd------GleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.++++.+.+.- .|+|.+-. -+ .+++++.+|. .++|||+++...+.- ..|++.||.
T Consensus 23 ~~~~~~l~~~G--aD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC------CSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc------cCCCCEEEE
No 305
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.07 E-value=84 Score=29.56 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCeEEEEC--C---HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCC
Q 009824 35 CLKILEKFLRECQYEVTVTN--R---AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYS 106 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~--s---g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~ 106 (524)
+...+++.+++.||.+..+. . ..+.++.+... .+|-||+--..+ +. +.++.+.. .+|||++....
T Consensus 29 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~~~~ 98 (289)
T 3k9c_A 29 LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRE--RCEAAILLGTRF--DT-DELGALAD--RVPALVVARAS 98 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTT--TEEEEEEETCCC--CH-HHHHHHHT--TSCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhC--CCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEcCCC
Confidence 34456666777899987542 2 34555555433 489877753322 22 56666643 89999886543
No 306
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=31.95 E-value=2.7e+02 Score=28.08 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---C--CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC-CCH
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---E--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKP-VRM 129 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~---~--~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP-~~~ 129 (524)
..+.++.+... .+|.|++|+.=.-.+--++.+.++. . ...+++|-+...+...+..+++.|+...+.-= -+.
T Consensus 52 ~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~sa 129 (339)
T 1izc_A 52 STFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETV 129 (339)
T ss_dssp CHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCH
T ss_pred CHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCH
Confidence 34444544443 4999999985433343334444431 1 23788999988899999999999998766522 456
Q ss_pred HHHHHHHHHH
Q 009824 130 EELKNTWQHV 139 (524)
Q Consensus 130 eeL~~aI~~v 139 (524)
+++..++..+
T Consensus 130 ee~~~~~~~~ 139 (339)
T 1izc_A 130 EEVREFVKEM 139 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777665553
No 307
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=31.87 E-value=42 Score=32.38 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=60.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCC---------CCCCCHHHHHHHHh
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVY---------MPDMDGFKLLELVG 92 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~---------MPdmdGleLLe~Lr 92 (524)
++++|+.+.+ ....++++.+..+-.|... -+..+..+.+.. .|++++=.. -.+.-|+.+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 4566666543 2233334333333233322 234444555543 577766433 12344677777764
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhc--CCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGINH--GACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al~~--GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
..+|||..- ... ..+.++. |..+++..| +.++|..++..++.
T Consensus 264 --~G~PvI~s~-~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 264 --SGTPVVGTG-NGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp --TTCCEEECC-TTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred --cCCCEEEcC-CCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 357887543 332 4556677 888999999 99999998876543
No 308
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=31.80 E-value=41 Score=32.53 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=36.4
Q ss_pred CceEEEEeCCC--CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 69 NFDLVISDVYM--PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 69 ~pDLVIlDi~M--PdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
..|+|++-... ...+-+++++.+|. .++|||+++... +.+..||+.|+.-
T Consensus 36 GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 36 QTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp SCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred CCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 47999987743 12245667778877 899999999864 2346699999885
No 309
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=31.77 E-value=43 Score=30.18 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=33.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
.|+|+|-.......+.+.|++.|++++.+.... .++.+... .+|.||+
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~--~~dglil 49 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAM--NPKGIIF 49 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHT--CCSEEEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhccc--CCCEEEE
Confidence 499999888888899999999999887665432 22223322 3776665
No 310
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=31.31 E-value=1.6e+02 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=21.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT 53 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a 53 (524)
|+|||..-.-.+-..+...|.+.|++|+.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~ 30 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 567777777777777777776667777643
No 311
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=31.29 E-value=1.3e+02 Score=30.37 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY---EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy---~V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
-+|.-||-++...+..+.-++..+. .+. ...+..+.+..+......+|+||+|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4799999999999999999887776 454 56788777665543234699999984
No 312
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=31.25 E-value=1.3e+02 Score=28.68 Aligned_cols=70 Identities=6% Similarity=-0.088 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCeEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCH
Q 009824 37 KILEKFLRECQYEVTV---T----NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDT 108 (524)
Q Consensus 37 ~~L~~~L~~~gy~V~~---a----~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr-~~~diPVIvlTa~~d~ 108 (524)
+.+++.|++.|.+++. + .+....+..+.... ||+|++.. .+.+...+++.++ ....+|+|...+..+.
T Consensus 153 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~--~dav~~~~--~~~~a~~~~~~~~~~g~~~p~i~~~g~~~~ 228 (362)
T 3snr_A 153 NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAAN--PDAILVGA--SGTAAALPQTTLRERGYNGLIYQTHGAASM 228 (362)
T ss_dssp HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHC--CSEEEEEC--CHHHHHHHHHHHHHTTCCSEEEECGGGCSH
T ss_pred HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHHHcCCCccEEeccCcCcH
Confidence 3444555566666431 1 23344455444432 67776643 1233444555443 3345666555555554
Q ss_pred HH
Q 009824 109 KL 110 (524)
Q Consensus 109 ~~ 110 (524)
..
T Consensus 229 ~~ 230 (362)
T 3snr_A 229 DF 230 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 313
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=30.81 E-value=30 Score=28.63 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=21.2
Q ss_pred CCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhcc
Q 009824 228 EGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDGF 273 (524)
Q Consensus 228 ~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~igl 273 (524)
.++|.+||+-++.+...|+......++.+|+ .+...++.+|...|+
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gl 94 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 3444444444443443333333344555555 233456666655443
No 314
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=30.80 E-value=2.5e+02 Score=26.11 Aligned_cols=97 Identities=16% Similarity=0.084 Sum_probs=54.6
Q ss_pred cEEEEEeCC------HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH----------H-
Q 009824 24 MRVLAVDDD------QTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDG----------F- 85 (524)
Q Consensus 24 irVLIVDDd------p~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdG----------l- 85 (524)
...+++.+. ....+.+.. ..+.|..+. ++.+..+..++ ... ..++|=..-.-.-..| +
T Consensus 83 ad~Vll~~ser~l~~~e~~~~~~~-a~~~Gl~~iv~v~~~~e~~~~-~~~--~~~~i~~~~~~~iGtG~~~~t~~~~~~~ 158 (219)
T 2h6r_A 83 CKGTLINHSEKRMLLADIEAVINK-CKNLGLETIVCTNNINTSKAV-AAL--SPDCIAVEPPELIGTGIPVSKANPEVVE 158 (219)
T ss_dssp CCEEEESBTTBCCBHHHHHHHHHH-HHHHTCEEEEEESSSHHHHHH-TTT--CCSEEEECCCC--------------CSH
T ss_pred CCEEEECCccccCCHHHHHHHHHH-HHHCCCeEEEEeCCchHHHHH-HhC--CCCEEEEEeccccccCCCCccCCHHHHH
Confidence 455566553 133333333 334588766 55665554333 222 2455544433320123 1
Q ss_pred HHHHHHhcCC-CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 86 KLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 86 eLLe~Lr~~~-diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.++.++... ++||++-.+-...+.+..+...|++++|+
T Consensus 159 ~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlV 198 (219)
T 2h6r_A 159 GTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLL 198 (219)
T ss_dssp HHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEE
Confidence 2334444333 78999888888888898899999999987
No 315
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=30.75 E-value=2.4e+02 Score=23.77 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=49.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy-~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
...+|..+|-++...+..+..++..+. .+. ...+..+. +.. ..+|+|+++.. .+--++++.+...++-.+
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~--~~~D~i~~~~~---~~~~~~l~~~~~~~gG~l 127 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDK--LEFNKAFIGGT---KNIEKIIEILDKKKINHI 127 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGG--CCCSEEEECSC---SCHHHHHHHHHHTTCCEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---ccC--CCCcEEEECCc---ccHHHHHHHHhhCCCCEE
Confidence 357899999999999999999887664 344 45666552 222 35999999866 455566666643344445
Q ss_pred EEEe
Q 009824 100 VMLS 103 (524)
Q Consensus 100 IvlT 103 (524)
++.+
T Consensus 128 ~~~~ 131 (183)
T 2yxd_A 128 VANT 131 (183)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5444
No 316
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=30.36 E-value=1.5e+02 Score=28.46 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=55.9
Q ss_pred HHHHHHhCCC-eEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHH
Q 009824 39 LEKFLRECQY-EVTVTNRAITALKMLREN-RNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGI 115 (524)
Q Consensus 39 L~~~L~~~gy-~V~~a~sg~eALe~L~e~-~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al 115 (524)
+.+.|++.+. -|+...+.++++++.+.- ...+++|=+ .+-..++++.++.++. .++ .+|-.-.--+.+.+..++
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEv--t~~t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai 103 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEI--TFRSDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAK 103 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEE--ETTSTTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHH
Confidence 3344444443 344556666666655431 123554444 4445678999988864 344 444444456789999999
Q ss_pred hcCCcEEEeCCCCHHHHHHHHH
Q 009824 116 NHGACDYLLKPVRMEELKNTWQ 137 (524)
Q Consensus 116 ~~GA~dYL~KP~~~eeL~~aI~ 137 (524)
++||+..+. |-...++....+
T Consensus 104 ~AGA~fIvs-P~~~~~vi~~~~ 124 (232)
T 4e38_A 104 EAGATFVVS-PGFNPNTVRACQ 124 (232)
T ss_dssp HHTCSEEEC-SSCCHHHHHHHH
T ss_pred HcCCCEEEe-CCCCHHHHHHHH
Confidence 999976665 544444444433
No 317
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=30.29 E-value=3.6e+02 Score=26.63 Aligned_cols=91 Identities=11% Similarity=0.003 Sum_probs=56.0
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcC-CCCc
Q 009824 26 VLAVDDDQTC----LKILEKFLRECQY-E-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLP 98 (524)
Q Consensus 26 VLIVDDdp~~----~~~L~~~L~~~gy-~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~diP 98 (524)
|+|.|.+-.. ...++..-+..+. . .+.+.+.+++.+.++. ..|.|.+|- ++--++.+.++.. .+++
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~~e~l~~~v~~~~~~~~ 254 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FNTDQMREAVKRVNGQAR 254 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CCHHHHHHHHHTTCTTCC
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCe
Confidence 5666655543 3444444444443 3 3467888888887753 389999986 3333333333322 3455
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
| ..++.-+.+.+.+..+.||+.+-+
T Consensus 255 I-~ASGGIt~~~i~~~a~~GvD~isv 279 (296)
T 1qap_A 255 L-EVSGNVTAETLREFAETGVDFISV 279 (296)
T ss_dssp E-EECCCSCHHHHHHHHHTTCSEEEC
T ss_pred E-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 5 466666899999999999965543
No 318
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=30.27 E-value=50 Score=31.81 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCC--CCCHHHHHHHHhcCCCCcEEEEecC-CCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMP--DMDGFKLLELVGLEMDLPVVMLSAY-SDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MP--dmdGleLLe~Lr~~~diPVIvlTa~-~d~~~~~~al~~GA~dYL~ 124 (524)
.++++.+.+.- .|+|.+-..-. -.+-+++++.+|. .++|||+++.. ... ..|++++|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 319
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=30.25 E-value=1.2e+02 Score=30.34 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcC------------CCceEEEEeCCCCCC-CHHHHH
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENR------------NNFDLVISDVYMPDM-DGFKLL 88 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy-~V~-~a~sg~eALe~L~e~~------------~~pDLVIlDi~MPdm-dGleLL 88 (524)
-+|+-||-++...+..+.-++..+. .+. ...++.+.+..+.... ..||+|++|- |.. -.-+++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dP--Pr~g~~~~~~ 313 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP--PRSGLDSETE 313 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECC--CTTCCCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECc--CccccHHHHH
Confidence 4799999999999999988887665 344 4456666655443210 1599999984 322 122456
Q ss_pred HHHhcCCCCcEEEEec
Q 009824 89 ELVGLEMDLPVVMLSA 104 (524)
Q Consensus 89 e~Lr~~~diPVIvlTa 104 (524)
+.++ +.-.||++|-
T Consensus 314 ~~l~--~~g~ivyvsc 327 (369)
T 3bt7_A 314 KMVQ--AYPRILYISC 327 (369)
T ss_dssp HHHT--TSSEEEEEES
T ss_pred HHHh--CCCEEEEEEC
Confidence 6665 2334555543
No 320
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=30.23 E-value=1.2e+02 Score=29.25 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCCcEEEEecCC--CHH--HHHHHHhcCCcEEEeCCCC--HHHHHHHHHHH
Q 009824 84 GFKLLELVGLEMDLPVVMLSAYS--DTK--LVMKGINHGACDYLLKPVR--MEELKNTWQHV 139 (524)
Q Consensus 84 GleLLe~Lr~~~diPVIvlTa~~--d~~--~~~~al~~GA~dYL~KP~~--~eeL~~aI~~v 139 (524)
|..+++.+.. .+|||+..... +.+ ......+.|+ +++..|-+ .++|..++..+
T Consensus 264 ~~~~~EAma~--G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAAA--GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHHH--TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHHh--CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 7777776643 57888764331 211 1334556777 99998855 88888887654
No 321
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=30.21 E-value=1.9e+02 Score=28.22 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=57.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEE-EEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCH---------HHHHHHHhcC
Q 009824 27 LAVDDDQTCLKILEKFLRECQYEVT-VTN--RAITALKMLRENRNNFDLVISDVYMPDMDG---------FKLLELVGLE 94 (524)
Q Consensus 27 LIVDDdp~~~~~L~~~L~~~gy~V~-~a~--sg~eALe~L~e~~~~pDLVIlDi~MPdmdG---------leLLe~Lr~~ 94 (524)
+|.|=.+.....+...+++.|..++ .+. +..+-++.+.+.. .+.|-+ +...+..| .+++++++..
T Consensus 130 IipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~-vs~~GvTG~~~~~~~~~~~~v~~vr~~ 206 (271)
T 3nav_A 130 LIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYL-LSRAGVTGAETKANMPVHALLERLQQF 206 (271)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEE-CCCC--------CCHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEE-EeccCCCCcccCCchhHHHHHHHHHHh
Confidence 4444444445567777777787644 332 2334444444443 233332 11222222 3567777766
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.++||++=.+-.+++.+.+++..||++.++-
T Consensus 207 ~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 207 DAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 6899998778888999988999999999985
No 322
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=30.16 E-value=1.6e+02 Score=29.04 Aligned_cols=108 Identities=10% Similarity=0.185 Sum_probs=58.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
.++||.||.--..-...+..+.+..+++++ .+....+..+.+.+. +.+ +.-+. +-+.+. .+++-+|
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---~g~-------~~~~~--~~~~l~-~~~~D~V 70 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR---YNC-------AGDAT--MEALLA-REDVEMV 70 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH---HTC-------CCCSS--HHHHHH-CSSCCEE
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCC-------CCcCC--HHHHhc-CCCCCEE
Confidence 348899998876554444433333378876 444333333333221 111 11111 112232 2333344
Q ss_pred EEe--cCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 101 MLS--AYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlT--a~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
+++ .....+.+..++++|..=|+.||+ +.++....++.+.+.
T Consensus 71 ~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 71 IITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp EECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 443 334456788899999999999994 567777766665443
No 323
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=30.11 E-value=31 Score=33.40 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhccCC
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDGFGG 275 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~igl~h 275 (524)
+||.++. .|+|.+||+-.+.++..|+..+..+++.+|+ .+...++..|...|+-.
T Consensus 204 ~vl~~~~-~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~~~~~~a~~~gli~ 259 (265)
T 3qp6_A 204 DIFHWMS-RGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHLAMTP 259 (265)
T ss_dssp HHHHHHH-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHTHHHHHCS
T ss_pred HHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCC
Confidence 6777774 8999999988888888888888888999998 45556667777666653
No 324
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=30.10 E-value=1.3e+02 Score=26.14 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=38.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
.+.+|.++.+... ..+|+..+..++.+.+..+++++|... ++|+++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecH
Confidence 4678888877763 345566788998999999999999865 499999974
No 325
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=29.77 E-value=41 Score=31.71 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=43.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLREN--RNNFDLVISDVY 78 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~--~~~pDLVIlDi~ 78 (524)
+|.+.+|..||-++...+..++.++..|. .|. ...++.+.+..+... ...+|+|++|..
T Consensus 82 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 82 LPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp SCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence 45567999999999988888888887765 354 567787776655321 245999999975
No 326
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=29.71 E-value=3.2e+02 Score=26.82 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=58.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCC-ceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNN-FDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~-pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
..+||.||.--..-...+..+.+..+++++ .+....+..+.+.+..+. ++....+ | +-+.+. .+++-+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~---~~~ll~-~~~~D~ 74 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------S---YESLLE-DPEIDA 74 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------S---HHHHHH-CTTCCE
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------C---HHHHhc-CCCCCE
Confidence 458999998766655555554444467776 444333333333322110 0111111 1 122333 233444
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHH
Q 009824 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVI 140 (524)
Q Consensus 100 IvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vl 140 (524)
|+++. ....+.+.+++++|..=++-||+ +.++....++.+-
T Consensus 75 V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~ 119 (362)
T 1ydw_A 75 LYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACE 119 (362)
T ss_dssp EEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHH
Confidence 44443 33457788999999999999995 5666666655543
No 327
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=29.60 E-value=1.4e+02 Score=29.94 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~-V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
.+|..||-++...+..+.-++..+.. +. ...++.+.+..+......+|+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 47999999999999999988876653 43 56788777665543334699999985
No 328
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=29.24 E-value=38 Score=31.71 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=36.1
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhc
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDG 272 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~ig 272 (524)
+||.++. .|+|.+||+-.+.++..|+..+..+++.+|+ .+...++.+|...|
T Consensus 180 ~vl~~~~-~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 232 (234)
T 1l3l_A 180 TYLRWIA-VGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRK 232 (234)
T ss_dssp HHHHHHT-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 5666654 7888888887777777777777778888888 34455666665444
No 329
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=29.21 E-value=1.4e+02 Score=29.48 Aligned_cols=75 Identities=25% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCeEEEECCHH---------------------------------------
Q 009824 21 PIGMRVLAVDDD----QTCLKILEKFLRECQYEVTVTNRAI--------------------------------------- 57 (524)
Q Consensus 21 p~~irVLIVDDd----p~~~~~L~~~L~~~gy~V~~a~sg~--------------------------------------- 57 (524)
...||||++-.. -.-...|...|.+.|++|+.+....
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPRE 92 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSS
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccc
Q ss_pred ---------------------HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 58 ---------------------TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 58 ---------------------eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
+..+.+++.+ ||+|+.|. ...-|.-+.+.++ +|+|.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--pDlVv~d~--~~~~~~~~a~~~g----iP~v~~~ 151 (398)
T 4fzr_A 93 EKPLLEHIGRGYGRLVLRMRDEALALAERWK--PDLVLTET--YSLTGPLVAATLG----IPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCTHHHHHHHHHT----CCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECc--cccHHHHHHHhhC----CCEEEec
No 330
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=29.20 E-value=89 Score=31.26 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=54.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
.+|||+|+.- -.+...+...|.+ .++|+.+.-..+.++.+.+. ...+-+|+. |--++.+.++ ..++-|.+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~---~~~~~~d~~----d~~~l~~~~~-~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF---ATPLKVDAS----NFDKLVEVMK-EFELVIGA 84 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT---SEEEECCTT----CHHHHHHHHT-TCSEEEEC
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc---CCcEEEecC----CHHHHHHHHh-CCCEEEEe
Confidence 3589999987 6677777778865 58888776555666665432 455555652 3333444554 23432222
Q ss_pred EecCCCHHHHHHHHhcCCcEEEe
Q 009824 102 LSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+-..-....+..|+++|+. |+-
T Consensus 85 ~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 85 LPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp CCGGGHHHHHHHHHHHTCE-EEE
T ss_pred cCCcccchHHHHHHhcCcc-eEe
Confidence 2233345677788888875 554
No 331
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=29.20 E-value=1e+02 Score=32.73 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMD-GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmd-GleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+..+.+.+. .+|+|.+|...+... -+++++.++. .+++|||+ ..-...+.+..+.++||+...+
T Consensus 233 ~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhc--cCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 3334444333 499999999877553 3467777754 46889887 3345677888999999998885
No 332
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=29.17 E-value=3.7e+02 Score=25.31 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=45.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCC--HHH----HHHHHhcCCcEEEe-----CCCCHHHHHHHHH
Q 009824 69 NFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSD--TKL----VMKGINHGACDYLL-----KPVRMEELKNTWQ 137 (524)
Q Consensus 69 ~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d--~~~----~~~al~~GA~dYL~-----KP~~~eeL~~aI~ 137 (524)
..|+|.+.. + -|++.++.+....++|||...+-.. .+. +.++++.||+.+.. +.-++.+....+.
T Consensus 179 Gad~i~~~~--~--~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~ 254 (273)
T 2qjg_A 179 GADIVKTSY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVC 254 (273)
T ss_dssp TCSEEEECC--C--SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHH
T ss_pred CCCEEEECC--C--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHH
Confidence 489888874 2 4688888776545799999888773 444 66677899998765 2224444444444
Q ss_pred HHHH
Q 009824 138 HVIR 141 (524)
Q Consensus 138 ~vlr 141 (524)
.++.
T Consensus 255 ~~~~ 258 (273)
T 2qjg_A 255 KIVH 258 (273)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 333
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=29.15 E-value=2.9e+02 Score=27.11 Aligned_cols=108 Identities=10% Similarity=0.137 Sum_probs=61.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCC
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~d 96 (524)
.|..++||.||.--..-.......|... +++++ .+....+..+ +.. +.+-+.+ |- -+.+. .++
T Consensus 3 ~M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~--~~~~~~~------~~---~~ll~-~~~ 67 (352)
T 3kux_A 3 AMADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADW--PAIPVVS------DP---QMLFN-DPS 67 (352)
T ss_dssp TTTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTC--SSCCEES------CH---HHHHH-CSS
T ss_pred cccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhC--CCCceEC------CH---HHHhc-CCC
Confidence 3556799999998766555344445543 77877 3433332222 111 1111111 11 12333 234
Q ss_pred CcEEEEec--CCCHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 009824 97 LPVVMLSA--YSDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIR 141 (524)
Q Consensus 97 iPVIvlTa--~~d~~~~~~al~~GA~dYL~KP--~~~eeL~~aI~~vlr 141 (524)
+-+|+++. ....+.+.+|+++|..=|+-|| .+.++....++.+-+
T Consensus 68 vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 68 IDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 44444433 3445778899999999999999 567777777666544
No 334
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=29.08 E-value=76 Score=30.72 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=51.2
Q ss_pred cEEEEEeC-CHHHH---HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH--HHHHhcC-CC
Q 009824 24 MRVLAVDD-DQTCL---KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKL--LELVGLE-MD 96 (524)
Q Consensus 24 irVLIVDD-dp~~~---~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleL--Le~Lr~~-~d 96 (524)
|||.||-. .+... ..+...|++.|+++. ...+|+||+ -|.||.=+ ++.+... .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~---------------~~~~D~vv~----lGGDGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD---------------DVEPEIVIS----IGGDGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC---------------SSSCSEEEE----EESHHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC---------------CCCCCEEEE----EcCcHHHHHHHHHHhhcCCC
Confidence 45655543 33333 345555777788771 134898887 37888532 2333322 47
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
+||+-+.. |-.+|+. .+.++++..+++.++.+
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTT
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcC
Confidence 89887732 4455665 55677788888887765
No 335
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=29.00 E-value=46 Score=32.52 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=56.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHH--------HHHHHhcCCCceEEEEeCCCCCCC-------
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITA--------LKMLRENRNNFDLVISDVYMPDMD------- 83 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eA--------Le~L~e~~~~pDLVIlDi~MPdmd------- 83 (524)
++-.+|+|++++.++.....++. |.+.|++|....-..+. .+.+.+...+.|+|++- +|+..
T Consensus 3 ~~~~~mki~v~~~~~~~~~~~~~-L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~--~~~~~~~~~i~s 79 (300)
T 2rir_A 3 AMLTGLKIAVIGGDARQLEIIRK-LTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILP--VSATTGEGVVST 79 (300)
T ss_dssp CCCCSCEEEEESBCHHHHHHHHH-HHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECC--SSCEETTTEECB
T ss_pred ccccCCEEEEECCCHHHHHHHHH-HHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEec--cccccCCccccc
Confidence 44557899999998877666544 56679998755311110 00011111247888861 11110
Q ss_pred ---HHH--H-HHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 84 ---GFK--L-LELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 84 ---Gle--L-Le~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+.. + -+.+...+...+|+ ++.+..+....+.+.|+.-+-.
T Consensus 80 ~~a~~~~~~~~~~l~~~~~l~~i~-~g~~~~d~~~~~~~~gi~v~~~ 125 (300)
T 2rir_A 80 VFSNEEVVLKQDHLDRTPAHCVIF-SGISNAYLENIAAQAKRKLVKL 125 (300)
T ss_dssp SSCSSCEECCHHHHHTSCTTCEEE-ESSCCHHHHHHHHHTTCCEEEG
T ss_pred ccccCCccchHHHHhhcCCCCEEE-EecCCHHHHHHHHHCCCEEEee
Confidence 001 1 12333445666776 8887766577888888776544
No 336
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=28.95 E-value=1.1e+02 Score=31.68 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=41.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCe---EE-EECCHHHHHHHHHhcCCCceEEEEeCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLREC------QYE---VT-VTNRAITALKMLRENRNNFDLVISDVYM 79 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~------gy~---V~-~a~sg~eALe~L~e~~~~pDLVIlDi~M 79 (524)
-+|-+||=|+.+.+..+++|... ..+ |. ...++.+.++...+....||+||+|+--
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 294 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCC
Confidence 57999999999999999987421 112 33 5688988887655444569999999754
No 337
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=28.70 E-value=1.8e+02 Score=29.12 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=55.9
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEEE-ECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcE
Q 009824 23 GMRVLAVDDDQTCL-KILEKFLRECQYEVTV-TNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~-~~L~~~L~~~gy~V~~-a~s-g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPV 99 (524)
++||.||.--.... ..+..+.+..+++++. +.. .+.+-+...+.. +. +.. |--++ +.. +++-+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~-~~~-------~~~el---l~~-~~vD~ 67 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYG--IP-VFA-------TLAEM---MQH-VQMDA 67 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHT--CC-EES-------SHHHH---HHH-SCCSE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC--CC-eEC-------CHHHH---HcC-CCCCE
Confidence 36788887773333 3344443334677763 332 333333322211 11 111 11222 221 23334
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 100 IvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
|+++. ....+.+.+++++|..=|+-||+ +.++....++.+-+.
T Consensus 68 V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 68 VYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 44433 33456788999999999999995 567777766665443
No 338
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=28.67 E-value=1.4e+02 Score=30.56 Aligned_cols=65 Identities=14% Similarity=-0.077 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMDG-FKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdG-leLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.++.+.+. .+|+|.+|........ .+.+++++. .+++|||+= .-.+.+.+..+.++||+...+
T Consensus 102 ~e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 3444444443 4899999976533222 456777764 367888861 134577889999999998886
No 339
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=28.43 E-value=1.5e+02 Score=27.89 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCC
Q 009824 34 TCLKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYS 106 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~s---g---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~ 106 (524)
.+...+++.+++.||.+..+.. . .+.++.+... .+|-||+--..+.. -+.++.+.. .+|||++....
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~~--~~~~~~l~~--~iPvV~i~~~~ 104 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEG--RVDGVLLQRREDFD--DDMLAAVLE--GVPAVTINSRV 104 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSC--SSSEEEECCCTTCC--HHHHHHHHT--TSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCcEEEEecCCCCc--HHHHHHHhC--CCCEEEECCcC
Confidence 3455667777788999875532 2 2345555443 48877764322221 115555654 89999886543
No 340
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=28.26 E-value=1.8e+02 Score=26.01 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=43.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy-~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
-+|..||-++...+..+..++..+. .+. ...+..+.+. .....+|+|++|.-....+--++++.+
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l 144 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLL 144 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 3899999999999999999987765 454 3455554332 222469999998543333444566555
No 341
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=28.19 E-value=1.3e+02 Score=28.86 Aligned_cols=56 Identities=21% Similarity=0.060 Sum_probs=37.2
Q ss_pred ccEEEEEeCC--------------------HHHHHHHHHHHHhCCCeEEEECCHH-----------------HHHHHHHh
Q 009824 23 GMRVLAVDDD--------------------QTCLKILEKFLRECQYEVTVTNRAI-----------------TALKMLRE 65 (524)
Q Consensus 23 ~irVLIVDDd--------------------p~~~~~L~~~L~~~gy~V~~a~sg~-----------------eALe~L~e 65 (524)
+||||+|-.. ......+...|.+.|++|+.+.... ...+.+++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 3889999877 2344556677777899998665321 34555655
Q ss_pred cCCCceEEEEeCCCC
Q 009824 66 NRNNFDLVISDVYMP 80 (524)
Q Consensus 66 ~~~~pDLVIlDi~MP 80 (524)
. .||+|++-...+
T Consensus 83 ~--~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 83 A--DVDVVHDHSGGV 95 (342)
T ss_dssp C--CCSEEEECSSSS
T ss_pred c--CCCEEEECCchh
Confidence 4 499998866544
No 342
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=28.07 E-value=1.3e+02 Score=30.48 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=40.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC---eEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 25 RVLAVDDDQTCLKILEKFLRECQY---EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 25 rVLIVDDdp~~~~~L~~~L~~~gy---~V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
+|.-||=++...+..++-++..+. .+. ...++.+.+..+......||+||+|-
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 799999999999999998887665 344 56788877765543333699999984
No 343
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.03 E-value=85 Score=30.81 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=26.8
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC
Q 009824 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83 (524)
Q Consensus 23 ~irVLIVDDdp~---~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmd 83 (524)
+.+|+++|-|+. ..+.+..+.+..|..+....+..+....+... ..+|+||+| .++.+
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 345666666542 12223333333333332223333332333322 358999999 45544
No 344
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=28.03 E-value=1.3e+02 Score=27.25 Aligned_cols=93 Identities=15% Similarity=0.026 Sum_probs=45.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhc-CCCCcE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGL-EMDLPV 99 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLLe~Lr~-~~diPV 99 (524)
+..|.++|.++...+.+.. ..++.+.... .-.+.++... -...|+||+-. ++. .-..++...+. .+...|
T Consensus 23 g~~v~vid~~~~~~~~l~~---~~~~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~--~~d~~n~~~~~~a~~~~~~~~i 95 (218)
T 3l4b_C 23 KYGVVIINKDRELCEEFAK---KLKATIIHGDGSHKEILRDAE--VSKNDVVVILT--PRDEVNLFIAQLVMKDFGVKRV 95 (218)
T ss_dssp TCCEEEEESCHHHHHHHHH---HSSSEEEESCTTSHHHHHHHT--CCTTCEEEECC--SCHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEECCHHHHHHHHH---HcCCeEEEcCCCCHHHHHhcC--cccCCEEEEec--CCcHHHHHHHHHHHHHcCCCeE
Confidence 4567778877765544332 3355554321 1223333321 23478887643 322 12222333343 456666
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 100 VMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 100 IvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
|..+... .......++||+..+.
T Consensus 96 ia~~~~~--~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 96 VSLVNDP--GNMEIFKKMGITTVLN 118 (218)
T ss_dssp EECCCSG--GGHHHHHHHTCEECCC
T ss_pred EEEEeCc--chHHHHHHCCCCEEEC
Confidence 6554443 3344445778865544
No 345
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=28.02 E-value=1.6e+02 Score=28.11 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTNR---AI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s---g~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
..+.+++.+++.||++..+.+ .. +.++.+.+. .+|.||+=- +.. .-.+.+..+..+++|+|++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~--~vdgIi~~~--~~~-~~~~~~~~~~~p~~p~v~id~~ 96 (296)
T 2hqb_A 25 AYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDG--GVNLIFGHG--HAF-AEYFSTIHNQYPDVHFVSFNGE 96 (296)
T ss_dssp HHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHT--TCCEEEECS--THH-HHHHHTTTTSCTTSEEEEESCC
T ss_pred HHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHC--CCCEEEEcC--HhH-HHHHHHHHHHCCCCEEEEEecC
Confidence 456777788888999876532 22 345555443 499988721 111 1112222234578999998654
No 346
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=27.94 E-value=1.7e+02 Score=29.51 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHh--------CCCeEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 009824 19 KFPIGMRVLAVDDDQTCLKILEKFLRE--------CQYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88 (524)
Q Consensus 19 ~~p~~irVLIVDDdp~~~~~L~~~L~~--------~gy~V~-~a~s-g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL 88 (524)
.|..+|||-||.=--.-+.-+..+.+. .+.+|+ .|.. .+.+-+..++.. ..-+..|+ -
T Consensus 22 ~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~--~~~~y~d~----------~ 89 (412)
T 4gqa_A 22 SMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLG--AEKAYGDW----------R 89 (412)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHT--CSEEESSH----------H
T ss_pred cccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcC--CCeEECCH----------H
Confidence 466679999998765444333333221 145666 4443 333333333321 22233332 1
Q ss_pred HHHhcCCCCcEEEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 89 ELVGLEMDLPVVMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 89 e~Lr~~~diPVIvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
+.+. .+++-+|+++. ....+.+.+|+++|..=|+-||+ +.++....++.+-+.
T Consensus 90 ~ll~-~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 146 (412)
T 4gqa_A 90 ELVN-DPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRA 146 (412)
T ss_dssp HHHH-CTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHH
T ss_pred HHhc-CCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHh
Confidence 2332 23444444433 34457899999999999999995 667777777765443
No 347
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=27.89 E-value=2.8e+02 Score=26.94 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=57.5
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEE-EE-C-CHHHHHHHHHhcCCCceEEEEeCCCC--CC------CHHHHHHHHhcCC
Q 009824 27 LAVDDDQTCLKILEKFLRECQYEVT-VT-N-RAITALKMLRENRNNFDLVISDVYMP--DM------DGFKLLELVGLEM 95 (524)
Q Consensus 27 LIVDDdp~~~~~L~~~L~~~gy~V~-~a-~-sg~eALe~L~e~~~~pDLVIlDi~MP--dm------dGleLLe~Lr~~~ 95 (524)
+|.|-.+.....+...+++.|..+. .+ . +..+-++.+.+.. .+.|.+=-.++ +. +-.+++++++...
T Consensus 128 ii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~--~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~ 205 (267)
T 3vnd_A 128 LIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG--EGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN 205 (267)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC--CSCEEESCCCCCC--------CHHHHHHHHHTTT
T ss_pred EeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC--CCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc
Confidence 3333333445566667777777654 22 2 2334455444433 22333311222 11 1245667777667
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 96 diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
++||++=.+-.+.+.+.+++..||+.+++-
T Consensus 206 ~~pv~vGfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 206 APPPLLGFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp CCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 899998777788899988999999999985
No 348
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=27.70 E-value=75 Score=28.52 Aligned_cols=57 Identities=9% Similarity=-0.015 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdm 82 (524)
|+|||..-.-.+-..+...|.+.|++|+.+....+.+..+.. ..+.++..|+.-++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEecccccccH
Confidence 689999988888888888887779999865544444444322 247788888765543
No 349
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=27.61 E-value=61 Score=32.57 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=39.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
+.+|.+||=++.+.+..++.+... +-++. ...++.+.++.+. ...||+||+|...+.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT--PASRDVIIRDVFAGA 171 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC--TTCEEEEEECCSTTS
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc--CCCCCEEEECCCCcc
Confidence 458999999999999998887532 22343 4677776654321 235999999976553
No 350
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=27.57 E-value=2.2e+02 Score=26.20 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 34 TCLKILEKFLRECQYEVTVTNR---AI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~s---g~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.+...++..+++.||++..+.. .. +.++.+... .+|-||+--.. .+. +.++.+.....+|||++...
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~--~~~-~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPRF--LSV-DEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHT--TCSEEEEECSS--SCH-HHHHHHHHTCSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEecCC--CCh-HHHHHHHhcCCCCEEEEccc
Confidence 3456677777788999886643 22 344444443 48877764322 222 44455543257999988643
No 351
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=27.42 E-value=1.7e+02 Score=29.50 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
-+|+-||-++...+..+.-++..+. .+. ...++.+.+..+......+|+|++|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 3799999999999999998887765 354 56787777665543334699999984
No 352
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=27.40 E-value=1.2e+02 Score=30.85 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHHhcCCCCcEEEEecCCC
Q 009824 35 CLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-D----MDGFKLLELVGLEMDLPVVMLSAYSD 107 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP-d----mdGleLLe~Lr~~~diPVIvlTa~~d 107 (524)
..+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+.-+-. . ..-++++..++...++|||.-.+-.+
T Consensus 213 ~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~a---Gad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~ 289 (380)
T 1p4c_A 213 NWEALRWLRDLWPHKLLVKGLLSAEDADRCIAE---GADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRR 289 (380)
T ss_dssp CHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHT---TCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCS
T ss_pred cHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCC
Confidence 34566666666666655 46788888777653 378877732210 1 11255565554433459999999999
Q ss_pred HHHHHHHHhcCCcEEEe
Q 009824 108 TKLVMKGINHGACDYLL 124 (524)
Q Consensus 108 ~~~~~~al~~GA~dYL~ 124 (524)
...+.+++.+||+....
T Consensus 290 ~~dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 290 GSDIVKALALGAEAVLL 306 (380)
T ss_dssp HHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHhCCcHhhe
Confidence 99999999999998765
No 353
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=27.31 E-value=2.3e+02 Score=24.00 Aligned_cols=70 Identities=17% Similarity=0.346 Sum_probs=41.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-CCH----HHHHHHHHh--cCCCceEEEEeCCCCCCCHHHHHHHHh--cC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT-NRA----ITALKMLRE--NRNNFDLVISDVYMPDMDGFKLLELVG--LE 94 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a-~sg----~eALe~L~e--~~~~pDLVIlDi~MPdmdGleLLe~Lr--~~ 94 (524)
|||.||.|. .... .++-.|.....+ .+. +++.+.+++ ...++.+|++.- .+.+.++ ..
T Consensus 1 MKIaVIGD~-Dtv~----GFrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte--------~ia~~i~~~~~ 67 (111)
T 2qai_A 1 MKIVVMGDS-DTVV----GFRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITE--------RLAQRIGSLPE 67 (111)
T ss_dssp CEEEEEECH-HHHH----HHHHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEH--------HHHHHHCSCCC
T ss_pred CEEEEEECH-HHHH----HHHHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcH--------HHHhhcccccc
Confidence 688999993 3222 222346666655 444 555544443 224688998874 3566776 55
Q ss_pred CCCcEEEEecCC
Q 009824 95 MDLPVVMLSAYS 106 (524)
Q Consensus 95 ~diPVIvlTa~~ 106 (524)
-+.|+|+.-...
T Consensus 68 i~~P~IleIPs~ 79 (111)
T 2qai_A 68 VKFPIILQIPDK 79 (111)
T ss_dssp CSSSEEEEECTT
T ss_pred cCCCEEEEECCC
Confidence 568887765443
No 354
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=27.29 E-value=1.9e+02 Score=29.34 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCC----CC-CCCHHHHHHHHhc--CCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVY----MP-DMDGFKLLELVGL--EMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~----MP-dmdGleLLe~Lr~--~~diPVIvlTa~ 105 (524)
..+.++.+-+..+..|. .+.+.++|..+.+. .+|.|.+.-+ +. +..-++++..++. ..++|||.-.+-
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI 293 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGV 293 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSC
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCC
Confidence 34455555554555444 45778888766543 3788877432 11 2234666666642 236999999999
Q ss_pred CCHHHHHHHHhcCCcEEEe
Q 009824 106 SDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 106 ~d~~~~~~al~~GA~dYL~ 124 (524)
.+...+.+++..||+....
T Consensus 294 ~~g~D~~kalalGAd~V~i 312 (368)
T 2nli_A 294 RRGEHVAKALASGADVVAL 312 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999998876
No 355
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=27.19 E-value=1.4e+02 Score=26.45 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=38.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
+.+|.++..... ...+...+...+.++..+.+..+++++|... ++|+++.|.
T Consensus 111 g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDLTAG--RLDAALQDE 162 (239)
T ss_dssp TCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHHHTT--SCSEEEEEH
T ss_pred CCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHHHcC--CCCEEEeCc
Confidence 567887766653 4455555544578888999999999999865 499999984
No 356
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=27.15 E-value=2.4e+02 Score=27.62 Aligned_cols=106 Identities=10% Similarity=0.123 Sum_probs=57.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~s-g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
+||.||.--..-...+..+.+..+++++ .+.. .+.+.+...... ..-+..|+ -+.+. .+++-+|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~~~----------~~ll~-~~~~D~V~ 69 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG--VEKAYKDP----------HELIE-DPNVDAVL 69 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT--CSEEESSH----------HHHHH-CTTCCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC--CCceeCCH----------HHHhc-CCCCCEEE
Confidence 6788888765555544444443467776 3433 333333332221 22222221 12232 23344444
Q ss_pred Eec--CCCHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHHHh
Q 009824 102 LSA--YSDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIRR 142 (524)
Q Consensus 102 lTa--~~d~~~~~~al~~GA~dYL~KP--~~~eeL~~aI~~vlr~ 142 (524)
++. ....+.+..++++|..=++.|| .+.++....++.+-+.
T Consensus 70 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~ 114 (344)
T 3ezy_A 70 VCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKA 114 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHH
T ss_pred EcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 433 3334567889999999999999 5667777766665443
No 357
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=27.10 E-value=33 Score=32.15 Aligned_cols=52 Identities=12% Similarity=-0.009 Sum_probs=34.6
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhc-CCCchhhhhhhhhc
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVG-SKDSSYLRIGALDG 272 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~-~sd~~ll~~aa~ig 272 (524)
+||.++. .|+|.+||+-.+.+...|+..+..+++.+|+ .+...++..|...|
T Consensus 182 ~vl~~~~-~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 234 (236)
T 2q0o_A 182 LCLVWAS-KGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRG 234 (236)
T ss_dssp HHHHHHH-TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 5666554 7778888777777777777667777788887 34455566565443
No 358
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.96 E-value=1.8e+02 Score=27.25 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCeEEEECC-----HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTNR-----AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s-----g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...++..+++.||.+..+.. ..+.++.+.... +|-||+--..+.. +.++.+.. ..+|||++...
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~~---~~~~~l~~-~~iPvV~~~~~ 97 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRR--VDALIVAHTQPED---FRLQYLQK-QNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTC--CSEEEECSCCSSC---HHHHHHHH-TTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCC--CCEEEEeCCCCCh---HHHHHHHh-CCCCEEEECCC
Confidence 344556667778999875432 245566666543 8877764332222 45555532 36899888654
No 359
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=26.90 E-value=3.6e+02 Score=25.77 Aligned_cols=81 Identities=12% Similarity=0.027 Sum_probs=41.1
Q ss_pred EEEEE-e-CCHHH---HHHHHHHHHhCCCeEEEE------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-
Q 009824 25 RVLAV-D-DDQTC---LKILEKFLRECQYEVTVT------NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG- 92 (524)
Q Consensus 25 rVLIV-D-Ddp~~---~~~L~~~L~~~gy~V~~a------~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr- 92 (524)
+|.+| + ++... .+.+++.+++.|.+|+.. .+....+..+... .+|+|++... +.+...+++.++
T Consensus 151 ~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~~~ 226 (366)
T 3td9_A 151 RVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSF--NPDAIYITGY--YPEIALISRQARQ 226 (366)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHT--CCSEEEECSC--HHHHHHHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhc--CCCEEEEccc--hhHHHHHHHHHHH
Confidence 56666 3 34332 244555666667766521 2344555555543 3788877321 233444555553
Q ss_pred cCCCCcEEEEecCCCHH
Q 009824 93 LEMDLPVVMLSAYSDTK 109 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~ 109 (524)
....+|+|...+..+..
T Consensus 227 ~g~~~~~~~~~~~~~~~ 243 (366)
T 3td9_A 227 LGFTGYILAGDGADAPE 243 (366)
T ss_dssp TTCCSEEEECGGGCSTH
T ss_pred cCCCceEEeeCCcCCHH
Confidence 33456665444444433
No 360
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=26.83 E-value=1.6e+02 Score=27.38 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~---sg~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...++..+++.||.+..+. +.. +.++.+... .+|-||+--. +.+ -+.++.++ ..+|||++...
T Consensus 26 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~--~~~-~~~~~~l~--~~iPvV~~~~~ 95 (285)
T 3c3k_A 26 VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGK--MVDGVITMDA--LSE-LPELQNII--GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTT--CCSEEEECCC--GGG-HHHHHHHH--TTSSEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEeCC--CCC-hHHHHHHh--cCCCEEEEccc
Confidence 44556667777899987553 222 334444433 4887776321 112 24555555 67999988643
No 361
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=26.57 E-value=4.2e+02 Score=26.24 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=51.3
Q ss_pred hCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCC--CCCH----------HHHHHHH----h-cCCCCcEEEEe-cC
Q 009824 45 ECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMP--DMDG----------FKLLELV----G-LEMDLPVVMLS-AY 105 (524)
Q Consensus 45 ~~gy~-V~~a~sg~eALe~L~e~~~~pDLVIlDi~MP--dmdG----------leLLe~L----r-~~~diPVIvlT-a~ 105 (524)
+.|.. +.++.+.++|..+..-. +|+|++..-+- +.-| .+.++.+ + ..+++.|+.-. +-
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpI 237 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPI 237 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTC
T ss_pred HCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 34654 55889999999887643 89999865432 3222 2333322 1 35676555444 45
Q ss_pred CCHHHHHHHHhc--CCcEEEeCC
Q 009824 106 SDTKLVMKGINH--GACDYLLKP 126 (524)
Q Consensus 106 ~d~~~~~~al~~--GA~dYL~KP 126 (524)
..++.+..+++. |+++|+.-.
T Consensus 238 stpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 238 ANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp CSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCHHHHHHHHhcCCCccEEEeeh
Confidence 788999999999 999999864
No 362
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=26.46 E-value=2.5e+02 Score=28.84 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=61.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHh---cCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCc
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRE---NRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e---~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diP 98 (524)
.+||.||.=-..-...+..+.+..+++++ .+....+..+.+.+ ..+.++.-+.+- ...| +-+.+. .+++-
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~---~~~ll~-~~~vD 93 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDD---YKNMLK-DKNID 93 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTT---HHHHTT-CTTCC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCC---HHHHhc-CCCCC
Confidence 58999998776555555544433477876 44433333333222 111122222210 0112 223333 23444
Q ss_pred EEEEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 99 VVMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 99 VIvlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
+|+++. ....+.+.+|+++|..=|+-||+ +.++....++.+-+.
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~ 141 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQT 141 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 444443 34457788999999999999995 577777766665443
No 363
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=26.19 E-value=1.4e+02 Score=30.42 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 57 ITALKMLRENRNNFDLVISDVYMPDMDG-FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdG-leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+.++.+.+. .+|+|.+|..-.+... ++.++.++...++|||+-. -...+.+..+.++||+...+
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 4444444443 3899998865433322 3566666554478888622 35677888999999988876
No 364
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=26.18 E-value=49 Score=32.28 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=32.6
Q ss_pred CCcEEEEec------CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 009824 96 DLPVVMLSA------YSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 96 diPVIvlTa------~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~ 142 (524)
.+|+|+|+= ++-.....++.++|+++.|+--+..+|.. .+....++
T Consensus 88 ~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~-~~~~~~~~ 139 (252)
T 3tha_A 88 KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESD-DLIKECER 139 (252)
T ss_dssp SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCH-HHHHHHHH
T ss_pred CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHH
Confidence 389999984 34455678888999999999777777643 34444443
No 365
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=26.16 E-value=1.9e+02 Score=28.05 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=21.4
Q ss_pred CCCCccEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEE
Q 009824 19 KFPIGMRVLAVDDDQ--------TCLKILEKFLRECQYEVTVT 53 (524)
Q Consensus 19 ~~p~~irVLIVDDdp--------~~~~~L~~~L~~~gy~V~~a 53 (524)
....+||||+|-+.. .....+...|.+.|++|+.+
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 58 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 344569999998652 34455666777779998743
No 366
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.99 E-value=2.1e+02 Score=26.58 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 34 TCLKILEKFLRECQYEVTVTNR------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~s------g~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.+...+++.+++.||.+..+.. ..+.++.+... .+|-||+--..+. + +.++.+.. ..+|||++...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~--~~~~~l~~-~~iPvV~~~~~ 96 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSG--NVDGFVLSSINYN-D--PRVQFLLK-QKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTT--CCSEEEECSCCTT-C--HHHHHHHH-TTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcC--CCCEEEEeecCCC-c--HHHHHHHh-cCCCEEEECCc
Confidence 4456667777888999876532 13456666544 4887777432222 2 44555532 46899888543
No 367
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=25.92 E-value=2.2e+02 Score=25.25 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=45.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 20 ~p~~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
+|.+.+|..||-++...+..++.++..++ .|. ...++.+.+.. ... +|+|++|... .+-.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~-fD~v~~~~~~--~~~~~~l~~~ 146 (210)
T 3c3p_A 78 ISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG---QRD-IDILFMDCDV--FNGADVLERM 146 (210)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT---CCS-EEEEEEETTT--SCHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc---CCC-CCEEEEcCCh--hhhHHHHHHH
Confidence 45467999999999999999998887665 344 45666554332 234 9999999542 3444556555
No 368
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=25.90 E-value=1.2e+02 Score=29.11 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=40.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLREC-----QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~-----gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
+...+|..||=++.+.+..++.+... .-+|. ...++.+.+... ...+|+||+|...|.
T Consensus 100 ~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 100 KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPI 163 (283)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCC
Confidence 34578999999999999999887642 12343 456776654432 346999999986553
No 369
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.78 E-value=3.2e+02 Score=27.60 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=45.6
Q ss_pred HHhCCCeEEE-EC--CHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009824 43 LRECQYEVTV-TN--RAITALKMLRENRNNFDLVISDVYM-------PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (524)
Q Consensus 43 L~~~gy~V~~-a~--sg~eALe~L~e~~~~pDLVIlDi~M-------PdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~ 112 (524)
+++.++.+.. .. ...+..+.+.+. ..|++.++..- |.. ..+-+++++...++|||+ -+-.+.+.+.
T Consensus 151 ~~~~g~~v~~~v~~~~~~e~a~~~~~a--gad~i~i~~~~~~~~~~~~~~-~~~~i~~l~~~~~~pvi~-ggi~t~e~a~ 226 (393)
T 2qr6_A 151 VRDSGEIVAVRVSPQNVREIAPIVIKA--GADLLVIQGTLISAEHVNTGG-EALNLKEFIGSLDVPVIA-GGVNDYTTAL 226 (393)
T ss_dssp HHHTTSCCEEEECTTTHHHHHHHHHHT--TCSEEEEECSSCCSSCCCC------CHHHHHHHCSSCEEE-ECCCSHHHHH
T ss_pred HhhcCCeEEEEeCCccHHHHHHHHHHC--CCCEEEEeCCccccccCCCcc-cHHHHHHHHHhcCCCEEE-CCcCCHHHHH
Confidence 3445776543 22 233333444332 47888887431 211 222345555455899997 4556778899
Q ss_pred HHHhcCCcEEEe
Q 009824 113 KGINHGACDYLL 124 (524)
Q Consensus 113 ~al~~GA~dYL~ 124 (524)
+++++||+...+
T Consensus 227 ~~~~~Gad~i~v 238 (393)
T 2qr6_A 227 HMMRTGAVGIIV 238 (393)
T ss_dssp HHHTTTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999887
No 370
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=25.73 E-value=2.2e+02 Score=27.64 Aligned_cols=66 Identities=23% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCCCCH-----------HHHHHHHhcCCCCcEEE-EecCCCHHH----HHHHHhcCC
Q 009824 57 ITALKMLRENRNNFD-LVISDVYMPDMDG-----------FKLLELVGLEMDLPVVM-LSAYSDTKL----VMKGINHGA 119 (524)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~MPdmdG-----------leLLe~Lr~~~diPVIv-lTa~~d~~~----~~~al~~GA 119 (524)
.++.+.+.+.. +| .|-+.+.-|...| .++++.++...++||++ ++..-+.+. +..+.++|+
T Consensus 109 ~~~a~~~~~~g--~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~ 186 (311)
T 1jub_A 109 IAMLKKIQESD--FSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPL 186 (311)
T ss_dssp HHHHHHHHHSC--CCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhcC--CCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Q ss_pred cEEEe
Q 009824 120 CDYLL 124 (524)
Q Consensus 120 ~dYL~ 124 (524)
+.+.+
T Consensus 187 d~i~v 191 (311)
T 1jub_A 187 TYVNS 191 (311)
T ss_dssp CEEEE
T ss_pred cEEEe
No 371
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=25.68 E-value=1.2e+02 Score=30.19 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=38.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~---V~-~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
.+|..||=++...+..++-++..+.. +. ...+..+.+..+......+|+||+|.
T Consensus 176 a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 176 AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 48999999999999999988765542 44 45677776654332223599999985
No 372
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=25.46 E-value=2e+02 Score=27.83 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=55.2
Q ss_pred cEEEEEeCCHHHHH-HHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009824 24 MRVLAVDDDQTCLK-ILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (524)
Q Consensus 24 irVLIVDDdp~~~~-~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvl 102 (524)
+||.||.--..-.. .+..+.+..+++++.+....+..+.+.+..+ ...+..| -.++ +. .++-+|++
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g-~~~~~~~-------~~~~---l~--~~~D~V~i 69 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR-VSATCTD-------YRDV---LQ--YGVDAVMI 69 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT-CCCCCSS-------TTGG---GG--GCCSEEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC-CCccccC-------HHHH---hh--cCCCEEEE
Confidence 68888887655443 3444433346777744433443443333211 1110111 1122 22 23444444
Q ss_pred ec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 103 SA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 103 Ta--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
+. ....+.+.+++++|..=++.||+ +.++....++.+-+
T Consensus 70 ~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 43 33446677899999998999996 46676666555443
No 373
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=25.40 E-value=2.5e+02 Score=25.87 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~---sg~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...++..+++.||++..+. +.+ +.++.+... .+|-||+--... +. .+++.+.....+|||++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~--~~-~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 25 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQK--RVDGLLVMCSEY--PE-PLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEEECSCC--CH-HHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhC--CCCEEEEEeccC--CH-HHHHHHHhccCCCEEEEccC
Confidence 34556666777899987553 333 234444443 488777643222 21 34455543357999988654
No 374
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=25.11 E-value=2.4e+02 Score=27.10 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHHH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTN---RAIT---ALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~---sg~e---ALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...++..+++.||.+..+. +.+. .++.+... .+|-||+--. +.+. .+++.+.....+|||++-..
T Consensus 76 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~--~~~~-~~~~~l~~~~~iPvV~~~~~ 147 (340)
T 1qpz_A 76 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQK--RVDGLLVMCS--EYPE-PLLAMLEEYRHIPMVVMDWG 147 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--CCCH-HHHHHHHTTTTSCEEEEEES
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEEeCC--CCCh-HHHHHHHhhCCCCEEEEecc
Confidence 34556666777899987653 2332 34555443 4887776321 1222 34455543357999988643
No 375
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=25.09 E-value=2e+02 Score=32.57 Aligned_cols=108 Identities=12% Similarity=0.214 Sum_probs=69.3
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHHhCCC--eEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 009824 24 MRVLAVDDDQ----------TCLKILEKFLRECQY--EVTVTN---RA---ITALKMLRENRNNFDLVISDVYMPDMDGF 85 (524)
Q Consensus 24 irVLIVDDdp----------~~~~~L~~~L~~~gy--~V~~a~---sg---~eALe~L~e~~~~pDLVIlDi~MPdmdGl 85 (524)
++++||.+.+ .....++.+.++.+. .|.... +. .+..+.+... .|++++=-. -+.-|+
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~a---aDvfV~PS~-~Egfgl 679 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDT---KGAFVQPAL-YEAFGL 679 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHT---TCEEEECCS-CBSSCH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhc---CeEEEECCC-ccCccH
Confidence 5677777766 255666666666554 344432 22 4444444422 467766332 244577
Q ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 009824 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (524)
Q Consensus 86 eLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr 141 (524)
.+++.+. ..+|||. |..+. ..+.+..|.++++..|-+.++|..+|..++.
T Consensus 680 vllEAMA--~G~PVIa-sd~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~ 729 (816)
T 3s28_A 680 TVVEAMT--CGLPTFA-TCKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFFT 729 (816)
T ss_dssp HHHHHHH--TTCCEEE-ESSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCEEE-eCCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7888764 3578886 44433 3455678899999999999999999988764
No 376
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=24.90 E-value=2.5e+02 Score=27.51 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+..+.++.+.+. .+|+|.+....| .++++.++.. .++|+... ...+.+.++.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~~--g~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEA--GIRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhc--CCCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 345777776654 389999887666 5777777654 67877543 45667788889999998874
No 377
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=24.90 E-value=65 Score=31.19 Aligned_cols=103 Identities=10% Similarity=0.058 Sum_probs=52.5
Q ss_pred CCCccEEEEEeCCH-----HHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 20 FPIGMRVLAVDDDQ-----TCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 20 ~p~~irVLIVDDdp-----~~~~~L~~~L~~~gy~V~~a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
+|..-+|.|+-|.. ...+.++..++..|++++.. .+..+....+.....+.|++++...-.-...++.+..+.
T Consensus 137 ~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~~~~~~~i~~~~ 216 (302)
T 3lkv_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAA 216 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcchhhHHHHHHHHH
Confidence 45556787776543 23455666677789987743 333333333332223588888754211112233343444
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHH
Q 009824 93 LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132 (524)
Q Consensus 93 ~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL 132 (524)
....+||+-.. . ..++.|+..=+. ++..++
T Consensus 217 ~~~~iPv~~~~----~----~~v~~G~l~~~~--~~~~~~ 246 (302)
T 3lkv_A 217 NQAKTPVFGAA----T----SYVERGAIASLG--FDYYQI 246 (302)
T ss_dssp HHTTCCEEESS----H----HHHHTTCSEEEE--CCHHHH
T ss_pred hhcCCceeecc----c----ccccCCceEEEe--cCHHHH
Confidence 45678876432 1 234667664333 344444
No 378
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=24.82 E-value=73 Score=29.87 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=63.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC----eEE-EECCHHHH--------------HHHHH----h--cCCCceEEEEeC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY----EVT-VTNRAITA--------------LKMLR----E--NRNNFDLVISDV 77 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy----~V~-~a~sg~eA--------------Le~L~----e--~~~~pDLVIlDi 77 (524)
+-+|.-||.++...+..+..|++.|+ +|. ...++.++ +..+. . ....||+||+|-
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 56899999999999999999999886 454 33443222 22111 1 124699999997
Q ss_pred CCCCCCHHHHHH-HHhcCCCCcEEEEe---cCCCHHHHHHHHh----cC-CcEEEeCC--CCHHHHHHHHHHH
Q 009824 78 YMPDMDGFKLLE-LVGLEMDLPVVMLS---AYSDTKLVMKGIN----HG-ACDYLLKP--VRMEELKNTWQHV 139 (524)
Q Consensus 78 ~MPdmdGleLLe-~Lr~~~diPVIvlT---a~~d~~~~~~al~----~G-A~dYL~KP--~~~eeL~~aI~~v 139 (524)
.- +...+. .++.-..--+|++= .......+.+.++ .| ..-|-+|| +..+.|...++..
T Consensus 131 ~k----~~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~~ 199 (202)
T 3cvo_A 131 RF----RVGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRTM 199 (202)
T ss_dssp SS----HHHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHHH
T ss_pred CC----chhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHHh
Confidence 42 223222 22222222344442 2233334444443 12 33455656 6777777777654
No 379
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=24.55 E-value=1.8e+02 Score=29.93 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhc--CCCCcEEEEecCC
Q 009824 36 LKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGL--EMDLPVVMLSAYS 106 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLLe~Lr~--~~diPVIvlTa~~ 106 (524)
.+.++.+-+..+..|. .+.+.++|..+.+. .+|.|++.-+-. +..-++++..++. ..++|||.-.+-.
T Consensus 241 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~ 317 (392)
T 2nzl_A 241 WEDIKWLRRLTSLPIVAKGILRGDDAREAVKH---GLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVR 317 (392)
T ss_dssp HHHHHHHC--CCSCEEEEEECCHHHHHHHHHT---TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCC
T ss_pred HHHHHHHHHhhCCCEEEEecCCHHHHHHHHHc---CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCC
Confidence 3344444443444443 45778888776643 388888843211 2234566655532 2369999999999
Q ss_pred CHHHHHHHHhcCCcEEEe
Q 009824 107 DTKLVMKGINHGACDYLL 124 (524)
Q Consensus 107 d~~~~~~al~~GA~dYL~ 124 (524)
+...+.+++.+||+....
T Consensus 318 ~g~Dv~kalalGAd~V~i 335 (392)
T 2nzl_A 318 KGTDVLKALALGAKAVFV 335 (392)
T ss_dssp SHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhCCCeeEE
Confidence 999999999999998765
No 380
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=24.42 E-value=2.4e+02 Score=29.56 Aligned_cols=107 Identities=11% Similarity=0.080 Sum_probs=58.3
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHhcCC
Q 009824 23 GMRVLAVDD----DQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGLEM 95 (524)
Q Consensus 23 ~irVLIVDD----dp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLLe~Lr~~~ 95 (524)
.+||.||.- -..-...+..+.+. .+++++ .+....+..+.+.+..+.++ -+..| +-+.+. .+
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d----------~~ell~-~~ 107 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDS----------LESFAQ-YK 107 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESC----------HHHHHH-CT
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCC----------HHHHhc-CC
Confidence 489999987 44444444444443 478876 44433333333333211111 12222 112332 23
Q ss_pred CCcEEEEec--CCCHHHHHHHHhcC------CcEEEeCCC--CHHHHHHHHHHHH
Q 009824 96 DLPVVMLSA--YSDTKLVMKGINHG------ACDYLLKPV--RMEELKNTWQHVI 140 (524)
Q Consensus 96 diPVIvlTa--~~d~~~~~~al~~G------A~dYL~KP~--~~eeL~~aI~~vl 140 (524)
++-+|+++. ....+.+.+|+++| ..=|+-||+ +.++....++.+-
T Consensus 108 ~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~ 162 (479)
T 2nvw_A 108 DIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQ 162 (479)
T ss_dssp TCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHH
Confidence 444555543 33456788899999 778999995 5667666666543
No 381
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=24.39 E-value=1.3e+02 Score=27.71 Aligned_cols=64 Identities=14% Similarity=0.358 Sum_probs=44.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALK-MLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy--~V~-~a~sg~eALe-~L~e~~~~pDLVIlDi~MPdmdGleLLe~L 91 (524)
..+|..||-++......+..++..+. .|. ...++.+.+. .+ ...||+|++|...+. -.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~~--~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAKAQ--SKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTSSS--HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcHHH--HHHHHHHH
Confidence 57899999999999999999988775 344 4566665544 33 235999999965433 33455544
No 382
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.34 E-value=68 Score=23.75 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=20.1
Q ss_pred CCCCHHhHHhhhhhcccchhhhhhhHHHhhcC-CCchhhhhhhh
Q 009824 228 EGLTRENVKFRLSLKRLGNKTLEAGMVASVGS-KDSSYLRIGAL 270 (524)
Q Consensus 228 ~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~~-sd~~ll~~aa~ 270 (524)
.++|.+||+-.+.+...++......+..+|+. +...++..+..
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~~~~ 68 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45555555544444444443333445555552 33345554443
No 383
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=24.29 E-value=5.7e+02 Score=25.90 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCCCeEEE--E---CCHHHHHHHHHhcCCCceEEEEeCCCCC---------------------CCHHHHH
Q 009824 35 CLKILEKFLRECQYEVTV--T---NRAITALKMLRENRNNFDLVISDVYMPD---------------------MDGFKLL 88 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~--a---~sg~eALe~L~e~~~~pDLVIlDi~MPd---------------------mdGleLL 88 (524)
+.+.++.+-+..+..|.. + .+.++|..+.+. .+|.|.++-. .+ ....+.+
T Consensus 194 ~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 194 WKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp HHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHH
Confidence 345566655555555543 3 467777766654 3788877543 11 1223444
Q ss_pred HHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 89 ELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 89 e~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..++. ..++|||.-.+-.+...+.+++.+||+....
T Consensus 270 ~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 270 LNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44432 3479999999999999999999999998766
No 384
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=24.26 E-value=89 Score=32.73 Aligned_cols=108 Identities=12% Similarity=0.233 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhCCCe----EEE---E-----------------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 009824 31 DDQTCLKILEKFLRECQYE----VTV---T-----------------NRAITALKMLRENRNNFDLVISDVYMPDMDGFK 86 (524)
Q Consensus 31 Ddp~~~~~L~~~L~~~gy~----V~~---a-----------------~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGle 86 (524)
++...++.+.+.+++.||+ |.. + -+..++++.+++.-.+++++.+.==++..| ++
T Consensus 216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~e 294 (428)
T 3tqp_A 216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIEDGLSEND-WA 294 (428)
T ss_dssp SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTC-HH
T ss_pred cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEeCCCCccc-HH
Confidence 3455556667777777663 221 2 256788887765112478888766555433 33
Q ss_pred HHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEE-EeCCCC---HHHHHHHHHHH
Q 009824 87 LLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDY-LLKPVR---MEELKNTWQHV 139 (524)
Q Consensus 87 LLe~Lr~~~diPVIvlTa~---~d~~~~~~al~~GA~dY-L~KP~~---~eeL~~aI~~v 139 (524)
-.+.++..-..||-++... .+.....++++.|++++ ..|+-. ..+.+.++..+
T Consensus 295 g~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTealkia~lA 354 (428)
T 3tqp_A 295 GWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLA 354 (428)
T ss_dssp HHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHH
Confidence 3333432223455334333 26788899999887766 456633 34444444433
No 385
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=24.24 E-value=3.7e+02 Score=26.89 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=31.6
Q ss_pred HHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+++++.++.. +++|||.--+-.+.+.+.++++ ||+....
T Consensus 185 ~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 185 HDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 5677777654 4899999888889999999998 9887655
No 386
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=24.17 E-value=3e+02 Score=29.33 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-------CCCCcEEE
Q 009824 36 LKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGL-------EMDLPVVM 101 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLLe~Lr~-------~~diPVIv 101 (524)
.+.++.+-+..+..|. .+.+.++|..+.+. .+|.|++.-+-- ....++++..+.. ..++|||+
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia 408 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEI---GVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHT---TCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHc---CCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEE
Confidence 3445544444455444 45677777766543 388888843211 1124566654421 24799999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEe
Q 009824 102 LSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~ 124 (524)
-.+-.+...+.+++.+||+...+
T Consensus 409 ~GGI~~g~Dv~kaLalGAdaV~i 431 (511)
T 1kbi_A 409 DGGVRRGTDVLKALCLGAKGVGL 431 (511)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ECCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998765
No 387
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=24.09 E-value=1.4e+02 Score=31.52 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDMD-GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdmd-GleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+..+..+.+.+. .+|+|.+|...+... -+++++.++. .+++|||+- .-...+.+..+.++||+...+
T Consensus 229 ~~~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAA--GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhc--ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 334444555443 499999998876543 3467777754 458888873 345677889999999999886
No 388
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=24.07 E-value=2.4e+02 Score=27.91 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=60.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
++||.||.--..-...+...|.. .+++++ .+....+..+.+.+....+. +.. |--++ +. .+++-+|
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~-~~~-------~~~~l---l~-~~~vD~V 72 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIP-VLD-------NVPAM---LN-QVPLDAV 72 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCC-EES-------SHHHH---HH-HSCCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCc-ccC-------CHHHH---hc-CCCCCEE
Confidence 48899999887665533334444 477877 44443443343332211111 111 22223 32 1333344
Q ss_pred EEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 101 MLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
++.. ....+.+.+++++|..=|+-||+ +.++....++.+-+.
T Consensus 73 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 118 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRS 118 (359)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 4433 33456788999999999999995 567777776665443
No 389
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=23.95 E-value=2.6e+02 Score=28.51 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009824 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~ 113 (524)
.....|.++-++.|..+.+..=..++++.+.+.. +|+ +=+--.++.-+.||+.+.. ...|||+=|+....+.+..
T Consensus 78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~~~--v~~--~KI~S~~~~N~pLL~~va~-~gKPviLstGmstl~Ei~~ 152 (350)
T 3g8r_A 78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEAHG--IEI--IKIASCSFTDWPLLERIAR-SDKPVVASTAGARREDIDK 152 (350)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT--CCE--EEECSSSTTCHHHHHHHHT-SCSCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHHcC--CCE--EEECcccccCHHHHHHHHh-hCCcEEEECCCCCHHHHHH
Confidence 4456677777778998875544456677776532 444 3444457888999999864 4689999999998887776
Q ss_pred HHh
Q 009824 114 GIN 116 (524)
Q Consensus 114 al~ 116 (524)
|++
T Consensus 153 Ave 155 (350)
T 3g8r_A 153 VVS 155 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 390
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=23.95 E-value=2.6e+02 Score=26.04 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~---sg~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...++..+++.||.+..+. +.. +.++.+... .+|-||+--. +.+ -+.++.+. ...+|||++...
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~-~~~~~~l~-~~~iPvV~~~~~ 104 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGK--QVDGIVFMGG--NIT-DEHVAEFK-RSPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--CCC-HHHHHHHH-HSSSCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecC--CCC-HHHHHHHH-hcCCCEEEEccc
Confidence 34556667778899987553 222 345555443 4887776432 122 23455553 357899988543
No 391
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=23.87 E-value=56 Score=32.19 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 84 GFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 84 GleLLe~Lr~~~diPVI--vlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
++++++.++...++||| ...+-.+.+.+.+++..||+.+++=
T Consensus 195 ~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 195 PYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 45677777555678988 5666668899999999999988764
No 392
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=23.81 E-value=1.3e+02 Score=37.88 Aligned_cols=85 Identities=6% Similarity=0.033 Sum_probs=55.6
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHH---HHhcCCCceEEE-EeCC---CCCCCH--------HHHHHHHhcCCCCcEEEE
Q 009824 39 LEKFLRECQYEVT-VTNRAITALKM---LRENRNNFDLVI-SDVY---MPDMDG--------FKLLELVGLEMDLPVVML 102 (524)
Q Consensus 39 L~~~L~~~gy~V~-~a~sg~eALe~---L~e~~~~pDLVI-lDi~---MPdmdG--------leLLe~Lr~~~diPVIvl 102 (524)
+.++++..|..+. .+.+..+|.+. +.+. .+|.|+ +.+. --+-.| ++++..++...++|||+-
T Consensus 684 ~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~a--G~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaa 761 (2060)
T 2uva_G 684 ANEYIQTLGIRHISFKPGSVDAIQQVINIAKA--NPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAG 761 (2060)
T ss_dssp HHHHHHHSCCSEEEECCCSHHHHHHHHHHHHH--CTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHcCCeEEEecCCHHHHHHHHHHHHHc--CCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEe
Confidence 4455666666655 34455555554 1222 377666 2222 112222 456677777778999999
Q ss_pred ecCCCHHHHHHHH-----------hcCCcEEEeC
Q 009824 103 SAYSDTKLVMKGI-----------NHGACDYLLK 125 (524)
Q Consensus 103 Ta~~d~~~~~~al-----------~~GA~dYL~K 125 (524)
.+-.+...+.+++ .+||++...=
T Consensus 762 GGI~~g~~i~aaltg~ws~~~g~palGAdgV~~G 795 (2060)
T 2uva_G 762 SGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFG 795 (2060)
T ss_dssp SSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEES
T ss_pred CCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEc
Confidence 9999999999999 9999998763
No 393
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=23.73 E-value=3.9e+02 Score=26.37 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=59.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~~-a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
++||.||.--..-...+. .|.. .+++++. +....+..+...+ +++-.. .|-- +.+. .+++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~~------~~~~---~ll~-~~~~D~V 69 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ----KGLKIY------ESYE---AVLA-DEKVDAV 69 (359)
T ss_dssp CEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT----TTCCBC------SCHH---HHHH-CTTCCEE
T ss_pred cCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh----cCCcee------CCHH---HHhc-CCCCCEE
Confidence 488999988766555444 4444 4778773 4433343343322 222110 1212 2232 2344444
Q ss_pred EEec--CCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 101 MLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa--~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
+++. ....+.+.+++++|..=++-||+ +.++....++.+-+.
T Consensus 70 ~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (359)
T 3e18_A 70 LIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV 115 (359)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHh
Confidence 4433 33456788999999999999995 567777777665443
No 394
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=23.63 E-value=2.7e+02 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.065 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 86 eLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
++++.++...++||++=.+-.+.+.+.+ +..||+..++=
T Consensus 196 ~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVG 234 (262)
T 2ekc_A 196 KKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVG 234 (262)
T ss_dssp HHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEEC
T ss_pred HHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEEC
Confidence 5666776555899888777777888877 88899999873
No 395
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=23.59 E-value=1.6e+02 Score=27.29 Aligned_cols=65 Identities=12% Similarity=0.246 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCeEEEECC--H----HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTNR--A----ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s--g----~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...+++.+++.||.+..+.. . .+.++.+... .+|-||+--.-.. + +.++.+.. ..+|||++...
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiIi~~~~~~-~--~~~~~l~~-~~iPvV~~~~~ 101 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGR--QIGGIILLYSREN-D--RIIQYLHE-QNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTT--CCCEEEESCCBTT-C--HHHHHHHH-TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEEeCCCCC-h--HHHHHHHH-CCCCEEEECCC
Confidence 345566667788999886542 2 2234444433 4888776321111 1 44555532 36899888654
No 396
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=23.58 E-value=1.4e+02 Score=30.14 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEE-EeCCCC---HH
Q 009824 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY-LLKPVR---ME 130 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dY-L~KP~~---~e 130 (524)
+.++|++.++.- .++++ .++--++ -++.++.++....+||+.-=...+.....++++.|++|+ ..||.. +.
T Consensus 201 ~~~~a~~~~~~l-~~~~i-~iE~P~~---~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 275 (379)
T 2rdx_A 201 RVDNAIRLARAT-RDLDY-ILEQPCR---SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLS 275 (379)
T ss_dssp CHHHHHHHHHHT-TTSCC-EEECCSS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHH
T ss_pred CHHHHHHHHHHH-HhCCe-EEeCCcC---CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHH
Confidence 456666665543 23555 5543333 345556666556788876655567788888888876554 567765 34
Q ss_pred HHHHHHHH
Q 009824 131 ELKNTWQH 138 (524)
Q Consensus 131 eL~~aI~~ 138 (524)
+.+.+...
T Consensus 276 ~~~~i~~~ 283 (379)
T 2rdx_A 276 KARRTRDF 283 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 397
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=23.52 E-value=2e+02 Score=25.03 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCCCCccEEEEEeCCHH-------------------HHHHHHHHHHhC----CCeEEEEC----CHHHHHHHHHh--cCC
Q 009824 18 DKFPIGMRVLAVDDDQT-------------------CLKILEKFLREC----QYEVTVTN----RAITALKMLRE--NRN 68 (524)
Q Consensus 18 ~~~p~~irVLIVDDdp~-------------------~~~~L~~~L~~~----gy~V~~a~----sg~eALe~L~e--~~~ 68 (524)
..++++.+|+++.|.-. ....+...|... ++.+.-.. ...+.+..+.. ...
T Consensus 3 ~~~~~~~~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~ 82 (216)
T 3rjt_A 3 AMIEPGSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVMAL 82 (216)
T ss_dssp CCCCTTCEEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGGCCEEEECCCTTCCHHHHHHHHHHHTGGG
T ss_pred CcCCCCCEEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCCCeEEEECCCCCccHHHHHHHHHhHHhhc
Confidence 35677889999999876 556677777643 36665322 33445554432 123
Q ss_pred CceEEEEeC
Q 009824 69 NFDLVISDV 77 (524)
Q Consensus 69 ~pDLVIlDi 77 (524)
.||+|++-+
T Consensus 83 ~pd~vvi~~ 91 (216)
T 3rjt_A 83 QPDYVSLMI 91 (216)
T ss_dssp CCSEEEEEC
T ss_pred CCCEEEEEe
Confidence 589999965
No 398
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=23.51 E-value=62 Score=30.61 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=48.3
Q ss_pred HHHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHhcC-----CCCcEEEEecCC
Q 009824 42 FLRECQYEVTV-T--NRAITALKMLRENRNNFDLVISDVYMPDMD-------GFKLLELVGLE-----MDLPVVMLSAYS 106 (524)
Q Consensus 42 ~L~~~gy~V~~-a--~sg~eALe~L~e~~~~pDLVIlDi~MPdmd-------GleLLe~Lr~~-----~diPVIvlTa~~ 106 (524)
.+++.|..+-. + .+..+.++.+.. ..|.|++=-..|+.. +++.+++++.. .++||.+.-+-.
T Consensus 107 ~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~ 183 (230)
T 1tqj_A 107 QIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 183 (230)
T ss_dssp HHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCC
T ss_pred HHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcC
Confidence 34455666543 3 344455544332 378887777777632 45656655432 278888776665
Q ss_pred CHHHHHHHHhcCCcEEEe
Q 009824 107 DTKLVMKGINHGACDYLL 124 (524)
Q Consensus 107 d~~~~~~al~~GA~dYL~ 124 (524)
. +.+.++.++||+.++.
T Consensus 184 ~-~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 184 P-NNTWQVLEAGANAIVA 200 (230)
T ss_dssp T-TTTHHHHHHTCCEEEE
T ss_pred H-HHHHHHHHcCCCEEEE
Confidence 4 7788888999999887
No 399
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=23.50 E-value=2.7e+02 Score=27.15 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=47.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECC--HHHHHHHHHhcCCCceEEEEeCCCC-----------CCCHH-HHH
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTVTNR--AITALKMLRENRNNFDLVISDVYMP-----------DMDGF-KLL 88 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy-~V~~a~s--g~eALe~L~e~~~~pDLVIlDi~MP-----------dmdGl-eLL 88 (524)
|+|||..-.-.+-..|...|.+.|+ +|+.+.- -.+.++.+-+ .+|+||-=.-.. ...|. .++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~---~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~ 77 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALL---KADFIVHLAGVNRPEHDKEFSLGNVSYLDHVL 77 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHH---HCSEEEECCCSBCTTCSTTCSSSCCBHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhc---cCCEEEECCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999888888877777777788 8886543 3444444333 289888533211 12333 355
Q ss_pred HHHhcCCC-CcEEEEecC
Q 009824 89 ELVGLEMD-LPVVMLSAY 105 (524)
Q Consensus 89 e~Lr~~~d-iPVIvlTa~ 105 (524)
+..+.... .++|++|+.
T Consensus 78 ~a~~~~~~~~~~v~~Ss~ 95 (369)
T 3st7_A 78 DILTRNTKKPAILLSSSI 95 (369)
T ss_dssp HHHTTCSSCCEEEEEEEG
T ss_pred HHHHHhCCCCeEEEeCch
Confidence 65543332 368888764
No 400
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=23.46 E-value=1.9e+02 Score=27.72 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=60.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
++||.||.--..-...+...|.. .+++++ .+....+..+.+.+..+ ... . .|--++ +. ..++-+|
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-~~~-~-------~~~~~l---l~-~~D~V~i 72 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR-IMP-F-------DSIESL---AK-KCDCIFL 72 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT-CCB-C-------SCHHHH---HT-TCSEEEE
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC-CCC-c-------CCHHHH---Hh-cCCEEEE
Confidence 48899998876666534444544 578877 44433333333332211 111 1 122223 33 3443333
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 101 MLSAYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 101 vlTa~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
........+.+.+++++|..=++.||+ +.++....++.+-+.
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 73 HSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred eCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 333344456788899999999999996 667777777665543
No 401
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=23.36 E-value=2.5e+02 Score=26.09 Aligned_cols=65 Identities=22% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCeEEEECC---H---HH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTNR---A---IT---ALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s---g---~e---ALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...++..+++.||.+..+.. . .+ .++.+... .+|-||+--..+ + -+.++.++. ..+|||++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~-~~~~~~l~~-~~iPvV~~~~~ 99 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGR--DCDGVVVISHDL--H-DEDLDELHR-MHPKMVFLNRA 99 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHT--TCSEEEECCSSS--C-HHHHHHHHH-HCSSEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhc--CccEEEEecCCC--C-HHHHHHHhh-cCCCEEEEccc
Confidence 445566677788999876532 1 23 55655544 388877743222 2 244555532 46899988543
No 402
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=23.33 E-value=2.4e+02 Score=26.61 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC------eEEEECCH------HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 33 QTCLKILEKFLRECQY------EVTVTNRA------ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 33 p~~~~~L~~~L~~~gy------~V~~a~sg------~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
..+.+.+++.|++.|| .+..+.+. .+.++.+.+.+ +|.||+ .+............++|||
T Consensus 23 ~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~--vDgII~------~~~~~~~~~~~~~~~iPvV 94 (302)
T 2qh8_A 23 DATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGEN--PDVLVG------IATPTAQALVSATKTIPIV 94 (302)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEE------ESHHHHHHHHHHCSSSCEE
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCC--CCEEEE------CChHHHHHHHhcCCCcCEE
Q ss_pred EE
Q 009824 101 ML 102 (524)
Q Consensus 101 vl 102 (524)
++
T Consensus 95 ~~ 96 (302)
T 2qh8_A 95 FT 96 (302)
T ss_dssp EE
T ss_pred EE
No 403
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=23.33 E-value=79 Score=30.93 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=35.2
Q ss_pred CcCCCCCCccEEEEEeCCHHHHHHHHHHHHh--CCCeEEEEC-CHHHHHHHHHhcCCCceEEEEeC
Q 009824 15 GVIDKFPIGMRVLAVDDDQTCLKILEKFLRE--CQYEVTVTN-RAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 15 ~~~~~~p~~irVLIVDDdp~~~~~L~~~L~~--~gy~V~~a~-sg~eALe~L~e~~~~pDLVIlDi 77 (524)
.++++--..|+||++.....+....+++-.+ .++.|.... ...+.++.|++.. ||+|++=-
T Consensus 22 ~~~~~~~~~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L~~~~--pDliv~~~ 85 (260)
T 1zgh_A 22 TSLYKKAGLMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN--PEYILFPH 85 (260)
T ss_dssp --------CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHHHHHC--CSEEEESS
T ss_pred ccCccccCceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHhcC--CCEEEEec
Confidence 3444444569999998877776666554332 367776553 3445566776654 89888744
No 404
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=23.17 E-value=1.3e+02 Score=30.44 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 009824 84 GFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 84 GleLLe~Lr~~~diPVI--vlTa~~d~~~~~~al~~GA~dYL~-----KP~~~eeL~~aI~~vlr~ 142 (524)
++++++.++....+||| ...+-.+++.+.+++++||+.+++ |--++.+....+..++..
T Consensus 228 ~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~ 293 (330)
T 2yzr_A 228 LYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYN 293 (330)
T ss_dssp HHHHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHh
Confidence 55888888665678986 455566799999999999999986 334566666666655543
No 405
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=23.16 E-value=2e+02 Score=27.91 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe--CCCCHHHHHHHHHHHH
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL--KPVRMEELKNTWQHVI 140 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~--KP~~~eeL~~aI~~vl 140 (524)
++.++.++...++||+.--..-+...+..+..+||+..++ .-++.+++...+..+.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 7778888766789999776666766789999999999987 4466666666655543
No 406
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=22.97 E-value=2.2e+02 Score=26.99 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC---CC-CCC-CHHHHHHHHhcCCCCcE--EEEecCCCHHHHHHHHhcCCcEEEeCCC
Q 009824 55 RAITALKMLRENRNNFDLVISDV---YM-PDM-DGFKLLELVGLEMDLPV--VMLSAYSDTKLVMKGINHGACDYLLKPV 127 (524)
Q Consensus 55 sg~eALe~L~e~~~~pDLVIlDi---~M-Pdm-dGleLLe~Lr~~~diPV--IvlTa~~d~~~~~~al~~GA~dYL~KP~ 127 (524)
+-.++++.+ +.. .|.+=+|+ +- |.. -|..+++.+|...+.|+ =+++... ..++..+.++||+.+..-..
T Consensus 14 ~l~~~i~~~-~~g--ad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp-~~~i~~~~~aGAd~itvh~E 89 (231)
T 3ctl_A 14 KFKEQIEFI-DSH--ADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRP-QDYIAQLARAGADFITLHPE 89 (231)
T ss_dssp GHHHHHHHH-HTT--CSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCG-GGTHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHH-HcC--CCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecCH-HHHHHHHHHcCCCEEEECcc
Confidence 445667777 332 45444443 31 433 38999999986556664 3444433 23577888999998877654
Q ss_pred C-HHHHHHHHHHH
Q 009824 128 R-MEELKNTWQHV 139 (524)
Q Consensus 128 ~-~eeL~~aI~~v 139 (524)
. ...+...++.+
T Consensus 90 a~~~~~~~~i~~i 102 (231)
T 3ctl_A 90 TINGQAFRLIDEI 102 (231)
T ss_dssp GCTTTHHHHHHHH
T ss_pred cCCccHHHHHHHH
Confidence 4 33455555544
No 407
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=22.88 E-value=1.2e+02 Score=31.06 Aligned_cols=101 Identities=24% Similarity=0.312 Sum_probs=62.1
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHH-------------------hcCCCceEEEEeCCC
Q 009824 24 MRVLAVD--DDQTC---LKILEKFLRECQYEVTVTNRAITALKMLR-------------------ENRNNFDLVISDVYM 79 (524)
Q Consensus 24 irVLIVD--Ddp~~---~~~L~~~L~~~gy~V~~a~sg~eALe~L~-------------------e~~~~pDLVIlDi~M 79 (524)
-+|+||- +++.. ...|.++|...|++|..-....+.+.... +....+|+||+
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~---- 114 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC---- 114 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----
Confidence 3688884 33433 44555666677999876544444332211 01124677776
Q ss_pred CCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 009824 80 PDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (524)
Q Consensus 80 PdmdGleLLe~Lr--~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~vlr~~ 143 (524)
-|.||. +|+..+ ....+||+=+. .|-.+||. ++..+++..++..++++.
T Consensus 115 lGGDGT-~L~aa~~~~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 115 LGGDGT-LLYASSLFQGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp ESSTTH-HHHHHHHCSSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred EcChHH-HHHHHHHhccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCC
Confidence 378884 333332 23568987664 36667887 788889999999998764
No 408
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=22.87 E-value=2e+02 Score=30.27 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 56 AITALKMLRENRNNFDLVISDVYMPDMDG-FKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~MPdmdG-leLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
..+..+.+.+. .+|+|.+|........ .++++.++.. +++|||+-+. ...+.+..+.++||+.+.+
T Consensus 256 ~~~~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34444444443 4899999887644333 4778877644 4889886433 5577888999999988866
No 409
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=22.84 E-value=1.7e+02 Score=28.68 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=40.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 69 NFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 69 ~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
+||+||.=-=-|..-|-.-.+.+-...++|.|+++...... ..++++..-.+||.=
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIiv 119 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILV 119 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEE
Confidence 38988876655566787777766456789999999877766 557776666666553
No 410
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=22.68 E-value=5e+02 Score=24.86 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=55.5
Q ss_pred cEEEEEeCCHHHHHH-HHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 24 MRVLAVDDDQTCLKI-LEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 24 irVLIVDDdp~~~~~-L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
|||.||.--..-... +..+.+ .+++++ .+....+..+.+.+..+.+. +. .| +-+.+. .+++-+|+
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g~~~-~~-------~~---~~~~l~-~~~~D~V~ 67 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGK-SV-------TS---VEELVG-DPDVDAVY 67 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTTCSC-CB-------SC---HHHHHT-CTTCCEEE
T ss_pred CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcCCCc-cc-------CC---HHHHhc-CCCCCEEE
Confidence 467777765555554 444444 678876 44433333333332211110 01 11 112333 23344554
Q ss_pred EecC--CCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 102 LSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 102 lTa~--~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
++.. ...+.+.+++++|..=|+.||+ +.++....++.+-+
T Consensus 68 i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 68 VSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 4433 3446788899999988999996 56666666655543
No 411
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=22.61 E-value=1.9e+02 Score=29.42 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCC------CCCCC------HHHHHHHHhcCCCCcEEEE--ecCCCHHHHHHHHhcCCcE
Q 009824 56 AITALKMLRENRNNFDLVISDVY------MPDMD------GFKLLELVGLEMDLPVVML--SAYSDTKLVMKGINHGACD 121 (524)
Q Consensus 56 g~eALe~L~e~~~~pDLVIlDi~------MPdmd------GleLLe~Lr~~~diPVIvl--Ta~~d~~~~~~al~~GA~d 121 (524)
.+.+.++++.. ..|.+.++++ +|+.+ -++.++.++..-++|||+= ......+.+..+.++||+.
T Consensus 137 ~~~~~~av~~~--~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~ 214 (368)
T 3vkj_A 137 LKEFQDAIQMI--EADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKN 214 (368)
T ss_dssp HHHHHHHHHHT--TCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHh--cCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCE
Confidence 45555545433 2577777764 34322 3667788877778999883 2224578899999999999
Q ss_pred EEe
Q 009824 122 YLL 124 (524)
Q Consensus 122 YL~ 124 (524)
..+
T Consensus 215 I~V 217 (368)
T 3vkj_A 215 FDT 217 (368)
T ss_dssp EEC
T ss_pred EEE
Confidence 987
No 412
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=22.59 E-value=1.1e+02 Score=29.48 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=34.4
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 69 NFDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLLe~Lr~-----~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
.+|.|++=-.-|+..| ++-+++++. ..+++| .+.+--+.+.+.++.++||+-++.
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I-~VDGGI~~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILL-EIDGGVNPYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEE-EEESSCCTTTHHHHHTTTCCEEEE
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeE-EEECCcCHHHHHHHHHcCCCEEEE
Confidence 3677776555677666 333344432 234554 455555678899999999999876
No 413
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=22.53 E-value=5.4e+02 Score=25.03 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCC--CCCHHHHHHHH-hcC-CCCcEEEEecCCCHH
Q 009824 36 LKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDV-YMP--DMDGFKLLELV-GLE-MDLPVVMLSAYSDTK 109 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi-~MP--dmdGleLLe~L-r~~-~diPVIvlTa~~d~~ 109 (524)
+..|..+-...|.++. .+.+.+|...++... .++|=++- ++- ..| ++....+ ..- .++.+|.-|+-.+.+
T Consensus 142 l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~---a~iIGINNRnL~tf~vd-l~~t~~L~~~ip~~~~~VsESGI~t~~ 217 (258)
T 4a29_A 142 LESLLEYARSYGMEPLILINDENDLDIALRIG---ARFIGIMSRDFETGEIN-KENQRKLISMIPSNVVKVAKLGISERN 217 (258)
T ss_dssp HHHHHHHHHHTTCCCEEEESSHHHHHHHHHTT---CSEEEECSBCTTTCCBC-HHHHHHHHTTSCTTSEEEEEESSCCHH
T ss_pred HHHHHHHHHHHhHHHHHhcchHHHHHHHhcCC---CcEEEEeCCCccccccC-HHHHHHHHhhCCCCCEEEEcCCCCCHH
Confidence 3444555556788765 789999988777643 67664432 222 223 3333333 333 356677788999999
Q ss_pred HHHHHHhcCCcEEEeC
Q 009824 110 LVMKGINHGACDYLLK 125 (524)
Q Consensus 110 ~~~~al~~GA~dYL~K 125 (524)
.+.+..++|++.||+-
T Consensus 218 dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 218 EIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHHTTCCEEEEC
T ss_pred HHHHHHHCCCCEEEEC
Confidence 9999999999999984
No 414
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=22.43 E-value=2.5e+02 Score=25.94 Aligned_cols=89 Identities=6% Similarity=-0.088 Sum_probs=60.4
Q ss_pred CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcE
Q 009824 46 CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACD 121 (524)
Q Consensus 46 ~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLLe~Lr~-~~diPVIvlTa~~d~~~~~~al~~GA~d 121 (524)
.|..+. -+.+..|+.++++. ..|.|-+ -|. .- |.+.++.++. .+++|++.+-+-. .+.+.+.+.+||+.
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~ 175 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLL 175 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBS
T ss_pred hCCCEEecCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcE
Confidence 354443 57788998887764 3787766 453 33 8898888864 4589998666554 67888999999887
Q ss_pred EEe-----CCCCHHHHHHHHHHHHHh
Q 009824 122 YLL-----KPVRMEELKNTWQHVIRR 142 (524)
Q Consensus 122 YL~-----KP~~~eeL~~aI~~vlr~ 142 (524)
... + -+++++..+.+.++..
T Consensus 176 vavgSai~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 176 AVGGSWLLQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp CEEESGGGS-SCHHHHHHHHHHHHHH
T ss_pred EEEehhhhC-CCHHHHHHHHHHHHHH
Confidence 643 3 4455566666665543
No 415
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=22.30 E-value=3e+02 Score=24.66 Aligned_cols=85 Identities=13% Similarity=-0.026 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCeEEE-EC---CHHHHHHHHHhcCCCceEE-EEeCCC---CCCCHH-HHHHHHhcCCCCcEEEEecCC
Q 009824 36 LKILEKFLRECQYEVTV-TN---RAITALKMLRENRNNFDLV-ISDVYM---PDMDGF-KLLELVGLEMDLPVVMLSAYS 106 (524)
Q Consensus 36 ~~~L~~~L~~~gy~V~~-a~---sg~eALe~L~e~~~~pDLV-IlDi~M---PdmdGl-eLLe~Lr~~~diPVIvlTa~~ 106 (524)
...+.+.+++.|..+-. +. +..+.++.+.+. ..|+| +.=... ++.+.. +.++.+... ++||++.-+-.
T Consensus 92 ~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~--g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GGI~ 168 (207)
T 3ajx_A 92 IAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL--GAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGGVK 168 (207)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT--TCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESSCC
T ss_pred HHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh--CCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECCcC
Confidence 33444555555666532 32 445544444433 37877 542211 222212 444444322 67877665554
Q ss_pred CHHHHHHHHhcCCcEEEe
Q 009824 107 DTKLVMKGINHGACDYLL 124 (524)
Q Consensus 107 d~~~~~~al~~GA~dYL~ 124 (524)
.+.+.+++++||+.++.
T Consensus 169 -~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 169 -VATIPAVQKAGAEVAVA 185 (207)
T ss_dssp -GGGHHHHHHTTCSEEEE
T ss_pred -HHHHHHHHHcCCCEEEE
Confidence 67888899999998865
No 416
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=22.09 E-value=2.6e+02 Score=23.61 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=38.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPD 81 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~--V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPd 81 (524)
+.+|..+|-++...+..+..++..+.. +....+..+. +......+|+|++...+..
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D~i~~~~~~~~ 106 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFIGGGLTA 106 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGGCCSCCSEEEECC-TTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhccCCCCCEEEECCcccH
Confidence 578999999999999999988876653 5444454332 2221145999999887765
No 417
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=21.81 E-value=5e+02 Score=24.61 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=43.8
Q ss_pred EEEEE-eCCHHH---HHHHHHHHHhCCCeEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 009824 25 RVLAV-DDDQTC---LKILEKFLRECQYEVTV---T----NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (524)
Q Consensus 25 rVLIV-DDdp~~---~~~L~~~L~~~gy~V~~---a----~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~ 93 (524)
||.+| +|+... .+.+++.|++.|.+++. + .+....+..+.... +|+|++.. .+.+...+++.++.
T Consensus 141 ~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~~ 216 (368)
T 4eyg_A 141 KVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAK--PDAMFVFV--PAGQGGNFMKQFAE 216 (368)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHC--CSEEEEEC--CTTCHHHHHHHHHH
T ss_pred EEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcC--CCEEEEec--cchHHHHHHHHHHH
Confidence 34333 444433 34556667777877652 1 24556666665543 88888854 34467777776642
Q ss_pred -CC---CCcEEEEecCCCHH
Q 009824 94 -EM---DLPVVMLSAYSDTK 109 (524)
Q Consensus 94 -~~---diPVIvlTa~~d~~ 109 (524)
.. ++|+|......+..
T Consensus 217 ~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 217 RGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp TTGGGTTCEEEEETTTTCHH
T ss_pred cCCCcCCceEEecCcccCHH
Confidence 22 25665544334433
No 418
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.76 E-value=2.4e+02 Score=26.15 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecCC
Q 009824 35 CLKILEKFLRECQYEVTVTNR---AI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYS 106 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s---g~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~~ 106 (524)
+...+++.+++.||.+..+.. .. +.++.+... .+|-||+--.-+ .-+.++.+. ...+|||++....
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~---~~~~~~~~~-~~~iPvV~~~~~~ 97 (291)
T 3egc_A 26 VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFER--RVDGLILAPSEG---EHDYLRTEL-PKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCSS---CCHHHHHSS-CTTSCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHC--CCCEEEEeCCCC---ChHHHHHhh-ccCCCEEEEeccc
Confidence 345666677788999886542 22 244555444 488887643322 223444443 3578999886554
No 419
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=21.74 E-value=2.7e+02 Score=27.05 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=58.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEE
Q 009824 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVT-NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a-~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIv 101 (524)
++||.||.--..-...+..+.+..+++++.+ ....+..+.+.+..+ ..-+. .|--++++ ....++-+|.
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~-~~~~~-------~~~~~ll~--~~~~D~V~i~ 74 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA-IPVAY-------GSYEELCK--DETIDIIYIP 74 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT-CCCCB-------SSHHHHHH--CTTCSEEEEC
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC-CCcee-------CCHHHHhc--CCCCCEEEEc
Confidence 4788888876665555555544457787744 322233333322211 11011 12122222 1223333333
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 102 LSAYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 102 lTa~~d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
.......+.+..++++|..=++.||+ +.++....++.+-+
T Consensus 75 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 75 TYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp CCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33344456788899999999999994 56777776665544
No 420
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.71 E-value=2.4e+02 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=22.6
Q ss_pred ccEEEEEeCC--H-------HHHHHHHHHHHhCCCeEEEEC
Q 009824 23 GMRVLAVDDD--Q-------TCLKILEKFLRECQYEVTVTN 54 (524)
Q Consensus 23 ~irVLIVDDd--p-------~~~~~L~~~L~~~gy~V~~a~ 54 (524)
.||||+|-+. | .....|...|.+.|++|+.+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5899999865 1 245567777878899988543
No 421
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=21.62 E-value=1.8e+02 Score=27.13 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=37.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN-------RAITALKMLRENRNNFDLVISDVY 78 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVIlDi~ 78 (524)
|+|||..-.-.+-..+...|.+.|++|+... +.+...+++... .+|+||--.-
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~--~~d~vi~~a~ 65 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEI--RPHIIIHCAA 65 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHH--CCSEEEECCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhc--CCCEEEECCc
Confidence 6899999988888888888877799998664 334444444432 3899885443
No 422
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=21.60 E-value=1.4e+02 Score=25.87 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCccEEEEEeCCHH-HHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEE
Q 009824 21 PIGMRVLAVDDDQT-CLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVIS 75 (524)
Q Consensus 21 p~~irVLIVDDdp~-~~~~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIl 75 (524)
+..++|.|||.|.. .-+.|.+.|. ..+.++ ...+.++|.+.++..+ ++.+|.
T Consensus 8 ~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~g~--~~~~l~ 61 (156)
T 3cni_A 8 TVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVKKEK--APAIIV 61 (156)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHHHHT--CSEEEE
T ss_pred CCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHHcCC--eeEEEE
Confidence 34578999986642 2234444455 444332 2468999999998765 665544
No 423
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=21.50 E-value=1e+02 Score=30.26 Aligned_cols=36 Identities=14% Similarity=0.368 Sum_probs=27.4
Q ss_pred CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 009824 107 DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (524)
Q Consensus 107 d~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr~ 142 (524)
..+.+.+|+++|..=|+-||+ +.++....++.+-+.
T Consensus 80 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 117 (337)
T 3ip3_A 80 NGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKV 117 (337)
T ss_dssp HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 346688999999999999996 456777777665543
No 424
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.49 E-value=3.7e+02 Score=24.63 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHhcCCCCcEEEEecC
Q 009824 34 TCLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPD-M-DGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~---sg~---eALe~L~e~~~~pDLVIlDi~MPd-m-dGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.+...+++.+++.||.+..+. +.. +.++.+... .+|-||+--.-+. . ...++++.++. ..+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~ 108 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQ--HIDGLIVEPTKSALQTPNIGYYLNLEK-NGIPFAMINAS 108 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEECCSSTTSCCTTHHHHHHHHH-TTCCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHC--CCCEEEEecccccccCCcHHHHHHHHh-cCCCEEEEecC
Confidence 345667777788899988654 233 344444443 4888777432221 1 23355555542 47899988654
No 425
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=21.48 E-value=96 Score=28.99 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
+++++.++ ..++|||+..+..+.+.+.++++.||+..+.
T Consensus 63 ~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 63 LPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 67777777 6789999999999999999999999988766
No 426
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=21.40 E-value=2.5e+02 Score=25.04 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=47.7
Q ss_pred CccEEEEEeCCHHH----------HHHHHHHHHhCCCeEEEE--------------------CCHHHHHHHHHhc--CCC
Q 009824 22 IGMRVLAVDDDQTC----------LKILEKFLRECQYEVTVT--------------------NRAITALKMLREN--RNN 69 (524)
Q Consensus 22 ~~irVLIVDDdp~~----------~~~L~~~L~~~gy~V~~a--------------------~sg~eALe~L~e~--~~~ 69 (524)
..++|+++.|.-.. ...|...|...++.+... ....+.+..+... ...
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~~ 83 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTHN 83 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhccC
Confidence 45789999987653 567788887767765432 1223444433221 124
Q ss_pred ceEEEEeCCCCCC--------CHH-HHHHHHh-cCCCCcEEEEecCC
Q 009824 70 FDLVISDVYMPDM--------DGF-KLLELVG-LEMDLPVVMLSAYS 106 (524)
Q Consensus 70 pDLVIlDi~MPdm--------dGl-eLLe~Lr-~~~diPVIvlTa~~ 106 (524)
||+|++-+-.-|. ..+ ++++.++ ..++.+||+++...
T Consensus 84 pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~p~~~ii~~~~~p 130 (215)
T 2vpt_A 84 PDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKPNVTLFVADYYP 130 (215)
T ss_dssp CSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCTTCEEEEECCCS
T ss_pred CCEEEEEccccccCCCCChhHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 8999986522111 122 2345554 35678888877543
No 427
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.35 E-value=52 Score=31.35 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred HHHhhcCCCCCCHHhHHhhhhhcccchhhhhhhHHHhhcC-CCchhhhhhhhhc
Q 009824 220 KILDLMNVEGLTRENVKFRLSLKRLGNKTLEAGMVASVGS-KDSSYLRIGALDG 272 (524)
Q Consensus 220 ~IL~lmk~~~LT~eevk~rL~mKr~t~~~q~~~~~~~L~~-sd~~ll~~aa~ig 272 (524)
+|+.+. ..|+|.+||+-.+.+...|+..+..++..+|+. +...++.+|...|
T Consensus 204 evl~L~-~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~~a~~~g 256 (258)
T 3clo_A 204 EILRCI-RKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMK 256 (258)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 677776 699999999988888888887888888888884 4556666665443
No 428
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=21.08 E-value=2.3e+02 Score=28.31 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 85 leLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
+++++.++...++|||..-+..+.+.+.++++.|..|.+
T Consensus 266 ~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 266 VPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEE
Confidence 567788876668999998888899999999999955544
No 429
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=21.06 E-value=1.8e+02 Score=29.92 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=58.3
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHhcC
Q 009824 22 IGMRVLAVDD----DQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGLE 94 (524)
Q Consensus 22 ~~irVLIVDD----dp~~~~~L~~~L~~-~gy~V~-~a~sg~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLLe~Lr~~ 94 (524)
..+||.||.- -..-...+..+.+. .+++++ .+....+..+.+.+..+.++ -+..| +-+.+. .
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~----------~~~ll~-~ 87 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPT----------LESFAS-S 87 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESS----------HHHHHH-C
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCC----------HHHHhc-C
Confidence 3589999986 32223334444443 478876 44444444444333211111 12222 122333 2
Q ss_pred CCCcEEEEecC--CCHHHHHHHHhcC------CcEEEeCCC--CHHHHHHHHHHHH
Q 009824 95 MDLPVVMLSAY--SDTKLVMKGINHG------ACDYLLKPV--RMEELKNTWQHVI 140 (524)
Q Consensus 95 ~diPVIvlTa~--~d~~~~~~al~~G------A~dYL~KP~--~~eeL~~aI~~vl 140 (524)
+++-+|+++.. ...+.+..|+++| ..=|+-||+ +.++....++.+-
T Consensus 88 ~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~ 143 (438)
T 3btv_A 88 STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAA 143 (438)
T ss_dssp SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHH
Confidence 34445555433 3456788899999 888999995 4677766666553
No 430
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=21.06 E-value=67 Score=30.85 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCceEEEEeCCC--CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 009824 58 TALKMLRENRNNFDLVISDVYM--PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (524)
Q Consensus 58 eALe~L~e~~~~pDLVIlDi~M--PdmdGleLLe~Lr~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~ 124 (524)
++++.+.+.. .|.|++.-.. ...+-+++++.++. .++|+|++++.. ..+..||+.|+.
T Consensus 22 ~~~~~~~~~G--tD~i~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvlfp~~~------~~v~~gaD~~l~ 81 (228)
T 3vzx_A 22 EQLEILCESG--TDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI------EAIVPGFDLYFI 81 (228)
T ss_dssp THHHHHHTSS--CSEEEECCCSCCCHHHHHHHHHHHTT-SSSCEEEECSCG------GGCCSCCSEEEE
T ss_pred HHHHHHHHcC--CCEEEECCcCCCCHHHHHHHHHHhhc-cCCCEEEeCCCH------HHccccCCEEEE
No 431
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=20.98 E-value=2.7e+02 Score=27.47 Aligned_cols=45 Identities=18% Similarity=0.091 Sum_probs=34.5
Q ss_pred CHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe-CCC
Q 009824 83 DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL-KPV 127 (524)
Q Consensus 83 dGleLLe~Lr~~-~diPVIvlTa~~d~~~~~~al~~GA~dYL~-KP~ 127 (524)
..++++..++.. .++|||...+-.+...+.+++..||+.... .|+
T Consensus 242 ~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 242 PTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPL 288 (332)
T ss_dssp BHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred cHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHH
Confidence 345666656433 379999999999999999999999988654 443
No 432
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.85 E-value=4e+02 Score=25.31 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 34 TCLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 34 ~~~~~L~~~L~~~gy~V~~a~---sg~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
.+...++..+++.||.+..+. +.. +.++.+... .+|-||+--. ..+.-.+.+.++ ...+|||++...
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~-~~~iPvV~~~~~ 152 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPR--FLSVDEIDDIID-AHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHT--TCSEEEECCS--SSCHHHHHHHHH-HCSSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC--CCChHHHHHHHH-cCCCCEEEEcCC
Confidence 345566677778899988654 222 244555544 4888777322 233433444443 346899888654
No 433
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=20.81 E-value=2.9e+02 Score=23.32 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=42.6
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-CCCCc
Q 009824 23 GMRVLAVDDD-QTCLKILEKFLRECQYEVTVTNRA--ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLP 98 (524)
Q Consensus 23 ~irVLIVDDd-p~~~~~L~~~L~~~gy~V~~a~sg--~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~-~~diP 98 (524)
+.+|.+||.+ +...+.+...+. .|+.+... ++ .+.++.. .-...|+||+-..-. ..-..++...+. .+..+
T Consensus 26 g~~V~vid~~~~~~~~~~~~~~~-~~~~~i~g-d~~~~~~l~~a--~i~~ad~vi~~~~~d-~~n~~~~~~a~~~~~~~~ 100 (153)
T 1id1_A 26 GQNVTVISNLPEDDIKQLEQRLG-DNADVIPG-DSNDSSVLKKA--GIDRCRAILALSDND-ADNAFVVLSAKDMSSDVK 100 (153)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHC-TTCEEEES-CTTSHHHHHHH--TTTTCSEEEECSSCH-HHHHHHHHHHHHHTSSSC
T ss_pred CCCEEEEECCChHHHHHHHHhhc-CCCeEEEc-CCCCHHHHHHc--ChhhCCEEEEecCCh-HHHHHHHHHHHHHCCCCE
Confidence 3556666665 333333433322 24554432 22 2233222 122477777754211 111222233333 46677
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEE
Q 009824 99 VVMLSAYSDTKLVMKGINHGACDYL 123 (524)
Q Consensus 99 VIvlTa~~d~~~~~~al~~GA~dYL 123 (524)
||+.....+. .....+.|++..+
T Consensus 101 ii~~~~~~~~--~~~l~~~G~~~vi 123 (153)
T 1id1_A 101 TVLAVSDSKN--LNKIKMVHPDIIL 123 (153)
T ss_dssp EEEECSSGGG--HHHHHTTCCSEEE
T ss_pred EEEEECCHHH--HHHHHHcCCCEEE
Confidence 7776544333 3334567887554
No 434
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=20.80 E-value=93 Score=27.66 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=33.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 009824 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM 79 (524)
Q Consensus 24 irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~M 79 (524)
|||||..-.-.+-..+...|.+.|++|+.+....+.++.+. ....++..|+.-
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d 53 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---KDINILQKDIFD 53 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---SSSEEEECCGGG
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---CCCeEEeccccC
Confidence 67888888877777777777777899885543333333332 125555555543
No 435
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=20.77 E-value=2.7e+02 Score=26.93 Aligned_cols=97 Identities=10% Similarity=0.010 Sum_probs=59.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE--EEC-CHHHHHHHHHhcCCCceEEEEeCCC--CCCC-H-----HHHHHHHhcC
Q 009824 26 VLAVDDDQTCLKILEKFLRECQYEVT--VTN-RAITALKMLRENRNNFDLVISDVYM--PDMD-G-----FKLLELVGLE 94 (524)
Q Consensus 26 VLIVDDdp~~~~~L~~~L~~~gy~V~--~a~-sg~eALe~L~e~~~~pDLVIlDi~M--Pdmd-G-----leLLe~Lr~~ 94 (524)
++|+|=.+.....+...+++.|..++ .+. +..+-++.+.+....| |-+=..+ -|.. + .++++++|..
T Consensus 120 ~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gF--iY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~ 197 (252)
T 3tha_A 120 LIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGF--IYLLASIGITGTKSVEEAILQDKVKEIRSF 197 (252)
T ss_dssp EECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSC--EEEECCSCSSSCSHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCe--EEEEecCCCCCcccCCCHHHHHHHHHHHHh
Confidence 44444444556667777788787654 333 3356666665544233 3331222 1322 2 2456777777
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 95 ~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
.++||++=.+-.+.+.+.++.+ +|++.++-
T Consensus 198 ~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVG 227 (252)
T 3tha_A 198 TNLPIFVGFGIQNNQDVKRMRK-VADGVIVG 227 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHHTT-TSSEEEEC
T ss_pred cCCcEEEEcCcCCHHHHHHHHh-cCCEEEEC
Confidence 7899999888889988877665 69999874
No 436
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=20.75 E-value=2.1e+02 Score=28.21 Aligned_cols=33 Identities=27% Similarity=0.147 Sum_probs=21.8
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCCeEEEECC
Q 009824 23 GMRVLAVDDD----QTCLKILEKFLRECQYEVTVTNR 55 (524)
Q Consensus 23 ~irVLIVDDd----p~~~~~L~~~L~~~gy~V~~a~s 55 (524)
.||||++-.. -.-...|...|++.|++|+.+..
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 4899998643 11124566677778999986644
No 437
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=20.67 E-value=1.3e+02 Score=28.20 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=37.0
Q ss_pred ccEEEEEeCC------HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 009824 23 GMRVLAVDDD------QTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (524)
Q Consensus 23 ~irVLIVDDd------p~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr 92 (524)
.-||++|+-- ..+...+.+.|++.|+++.......+..+.+++ .|.|++ |+.+-..+++.++
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----ad~I~l----pGG~~~~~~~~l~ 98 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----AEIIIV----GGGNTFQLLKESR 98 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----CSEEEE----CCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----CCEEEE----CCCcHHHHHHHHH
Confidence 4678888744 266677778888888887665322222233332 456554 6666666666554
No 438
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=20.65 E-value=1.8e+02 Score=28.07 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=54.5
Q ss_pred ccEEEEEeCCHHHHH-HHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEE
Q 009824 23 GMRVLAVDDDQTCLK-ILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (524)
Q Consensus 23 ~irVLIVDDdp~~~~-~L~~~L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVI 100 (524)
++||.||.--..-.. .+..+.+..+++++ .+....+..+.+.+. +.+ +--+.++.+ . .++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---~g~-------~~~~~~~~l---~--~~~D~V 69 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES---WRI-------PYADSLSSL---A--ASCDAV 69 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH---HTC-------CBCSSHHHH---H--TTCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH---cCC-------CccCcHHHh---h--cCCCEE
Confidence 478888887554444 33333333467776 443222222222221 111 011222322 2 234455
Q ss_pred EEecCCC--HHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 009824 101 MLSAYSD--TKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (524)
Q Consensus 101 vlTa~~d--~~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~vlr 141 (524)
+++.... .+.+..++++|..=++.||+ +.++....++.+-+
T Consensus 70 ~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 70 FVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp EECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5544433 46778899999988999995 56676665555433
No 439
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=20.63 E-value=1.6e+02 Score=29.87 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=40.6
Q ss_pred cEEEEEeCCHH------HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 009824 24 MRVLAVDDDQT------CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88 (524)
Q Consensus 24 irVLIVDDdp~------~~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL 88 (524)
-|+|||-|... ..+.+...|++.|+++..+. ...++++.+++.. +|+||- .-|..-+++.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~IIa---vGGGsv~D~a 108 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQ--CDIIVT---VGGGSPHDCG 108 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTT--CCEEEE---EESHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcchhhHH
Confidence 48999988743 46667777887788776543 2356666666654 888773 2345555665
Q ss_pred HHH
Q 009824 89 ELV 91 (524)
Q Consensus 89 e~L 91 (524)
+.+
T Consensus 109 K~i 111 (387)
T 3bfj_A 109 KGI 111 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 440
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=20.59 E-value=5.8e+02 Score=25.81 Aligned_cols=87 Identities=16% Similarity=-0.022 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCeEEEE-----CCHHHHHHHHHhcCCCceEEEEeCCCCCCC--------------------------
Q 009824 35 CLKILEKFLRECQYEVTVT-----NRAITALKMLRENRNNFDLVISDVYMPDMD-------------------------- 83 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a-----~sg~eALe~L~e~~~~pDLVIlDi~MPdmd-------------------------- 83 (524)
..+.++.+-+..+..|..- .+.+.|..+.+. .+|.|.++-+ .+..
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a---Gad~I~V~g~-GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~ 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY---GIKNFDTSGQ-GGTNWIAIEMIRDIRRGNWKAESAKNFLDW 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT---TCCEEECCCB-TSBCHHHHHHHHHHHTTCTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC---CCCEEEEeCC-CCCcccchhhhhcccccccchhhccccccc
Confidence 5556666555556666542 466777666543 3888887654 3311
Q ss_pred H---HHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 009824 84 G---FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (524)
Q Consensus 84 G---leLLe~Lr-~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~K 125 (524)
| ...+..++ ..+++|||.-.+-.+...+.+++.+||+....=
T Consensus 251 g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig 296 (368)
T 3vkj_A 251 GVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296 (368)
T ss_dssp SCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred cccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 1 12233332 334699999999999999999999999988763
No 441
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.45 E-value=2e+02 Score=28.50 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=38.8
Q ss_pred HHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 009824 87 LLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (524)
Q Consensus 87 LLe~Lr-~~~diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~eeL~~aI~~v 139 (524)
.++..+ ..+..||.+- -.+.+.+.+++++||+..+...++++++..+++.+
T Consensus 188 Av~~ar~~~~~~~IeVE--v~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 188 AVTKAKKLDSNKVVEVE--VTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHCTTSCEEEE--ESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCcEEEE--eCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 444444 3466787764 33457889999999999999999999999888764
No 442
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=20.42 E-value=4.6e+02 Score=23.36 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=46.8
Q ss_pred ECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhcC-C-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 009824 53 TNRAITALKMLREN-RNNFDLVISDVYMPDMDGFKLLELVGLE-M-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRM 129 (524)
Q Consensus 53 a~sg~eALe~L~e~-~~~pDLVIlDi~MPdmdGleLLe~Lr~~-~-diPVIvlTa~~d~~~~~~al~~GA~dYL~KP~~~ 129 (524)
..+.+++.+.++.- ...+|+|-+.+..| ++.+.++.++.. + +. +|-+....+.+.+..+.+.||+.. .-|.-.
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~ 93 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPHLD 93 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSSCC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCCCC
Confidence 34555555444321 12377776655554 566777777543 3 33 344434456788899999999877 656544
Q ss_pred HHHHHHHH
Q 009824 130 EELKNTWQ 137 (524)
Q Consensus 130 eeL~~aI~ 137 (524)
.++....+
T Consensus 94 ~~~~~~~~ 101 (205)
T 1wa3_A 94 EEISQFCK 101 (205)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 443
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=20.40 E-value=1.3e+02 Score=29.60 Aligned_cols=111 Identities=9% Similarity=-0.014 Sum_probs=59.4
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH---HHHh--cCCC
Q 009824 23 GMRVLAVDD-DQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL---ELVG--LEMD 96 (524)
Q Consensus 23 ~irVLIVDD-dp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL---e~Lr--~~~d 96 (524)
++||.||.- -..-...+..+ ...+.+++.+.+.......+.+.. ++.-+.+ |=-+++ +.+. ..++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~~~~~~~--~~~~~~~------~~~~ll~~~~~l~~~~~~~ 73 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVGIIDSIS--PQSEFFT------EFEFFLDHASNLKRDSATA 73 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCGGGGGTC--TTCEEES------SHHHHHHHHHHHTTSTTTS
T ss_pred ceEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHHHHHhhC--CCCcEEC------CHHHHHHhhhhhhhccCCC
Confidence 478888886 33334444443 344777774433221111111111 1211111 112333 2332 2455
Q ss_pred CcEEEEec--CCCHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHHHh
Q 009824 97 LPVVMLSA--YSDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIRR 142 (524)
Q Consensus 97 iPVIvlTa--~~d~~~~~~al~~GA~dYL~KP--~~~eeL~~aI~~vlr~ 142 (524)
+-+|+++. ....+.+.+|+++|..=|+-|| .+.++....++.+-+.
T Consensus 74 vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 74 LDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 55555543 3445678899999999999999 5677777777665443
No 444
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=20.38 E-value=1.4e+02 Score=30.21 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=38.9
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 009824 24 MRVLAVDDDQT-----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (524)
Q Consensus 24 irVLIVDDdp~-----~~~~L~~~L~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe 89 (524)
-|+|||-|... ..+.+...|++.|+++..+. ...++.+.+++. ++|+||- .-|..-+++.+
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRND--SFDFVVG---LGGGSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTS--CCSEEEE---EESHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHHH
Confidence 57888888733 45777788887787765432 234555555543 4898873 23445556655
Q ss_pred HH
Q 009824 90 LV 91 (524)
Q Consensus 90 ~L 91 (524)
.+
T Consensus 116 ~i 117 (371)
T 1o2d_A 116 AV 117 (371)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 445
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.35 E-value=2.8e+02 Score=26.84 Aligned_cols=63 Identities=8% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009824 35 CLKILEKFLRECQYEVTVTNR---AI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~s---g~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlT 103 (524)
+...++..+++.||.+..+.. .. +.++.+... .+|-||+--. +.+. +.++.+. ...+|+|++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~--~~~~-~~~~~l~-~~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRR--RPEAMVLSYD--GHTE-QTIRLLQ-RASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEEECS--CCCH-HHHHHHH-HCCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC--CCCH-HHHHHHH-hCCCCEEEEC
Confidence 445666677788999886532 22 344555444 3887666321 2222 4455553 2478999883
No 446
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=20.29 E-value=4.3e+02 Score=24.14 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=35.7
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCH-HHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHH
Q 009824 83 DGFKLLELVGLEMDLPVVMLSAYSDT-KLVMKGINHGACDYLLKPV--RMEELKNTWQHV 139 (524)
Q Consensus 83 dGleLLe~Lr~~~diPVIvlTa~~d~-~~~~~al~~GA~dYL~KP~--~~eeL~~aI~~v 139 (524)
.|+++++.++...+.|+++..-..+. ..+..+.++||+....-.. ..+++...++.+
T Consensus 55 ~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~ 114 (230)
T 1rpx_A 55 IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQI 114 (230)
T ss_dssp CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHH
T ss_pred cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHH
Confidence 57899988875545666554444444 4677788999998865444 334444444444
No 447
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=20.28 E-value=2.1e+02 Score=26.86 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=10.3
Q ss_pred CCCCccEEEEEeCCH
Q 009824 19 KFPIGMRVLAVDDDQ 33 (524)
Q Consensus 19 ~~p~~irVLIVDDdp 33 (524)
+-..++|||||..+|
T Consensus 21 ~~~~M~kiLiI~gsp 35 (218)
T 3rpe_A 21 QSNAMSNVLIINAMK 35 (218)
T ss_dssp ---CCCCEEEEECCC
T ss_pred ccccCcceEEEEeCC
Confidence 334567999999888
No 448
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=20.26 E-value=1.7e+02 Score=28.82 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=38.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--C---CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 009824 21 PIGMRVLAVDDDQTCLKILEKFLREC--Q---YEVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (524)
Q Consensus 21 p~~irVLIVDDdp~~~~~L~~~L~~~--g---y~V~-~a~sg~eALe~L~e~~~~pDLVIlDi~MP 80 (524)
++..+|..||=++.+.+..++.+... + -+|. ...++.+.+.. ....+|+||+|..-|
T Consensus 130 ~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 130 ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDP 192 (314)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC--
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCC
Confidence 34578999999999999999888642 2 2344 44666665443 234699999998544
No 449
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=20.20 E-value=2.6e+02 Score=24.31 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=37.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIlDi 77 (524)
.+.+|.++...... ..|...+.+++.+.+..+++++|... ++|+++.|.
T Consensus 115 ~g~~v~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~ 163 (233)
T 1ii5_A 115 KNKEVAVVRDTTAV-----DWANFYQADVRETNNLTAAITLLQKK--QVEAVMFDR 163 (233)
T ss_dssp TTCEEEEETTSHHH-----HHHHHTTCEEEEESSHHHHHHHHHTT--SCSEEEEEH
T ss_pred CCCeEEEECCccHH-----HHHHHcCCCeEEcCCHHHHHHHHHcC--CccEEEeCH
Confidence 35788888776543 24444478888999999999999865 499999985
No 450
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=20.15 E-value=4.4e+02 Score=25.53 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=2.9
Q ss_pred ceEEEE
Q 009824 70 FDLVIS 75 (524)
Q Consensus 70 pDLVIl 75 (524)
||+|++
T Consensus 199 ~dav~~ 204 (392)
T 3lkb_A 199 VEYVVH 204 (392)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 455444
No 451
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=20.09 E-value=1.1e+02 Score=27.73 Aligned_cols=55 Identities=27% Similarity=0.281 Sum_probs=38.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCc-eEEEEeCC
Q 009824 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNF-DLVISDVY 78 (524)
Q Consensus 22 ~~irVLIVDDdp~~~~~L~~~L~~~gy~V~~a~sg~eALe~L~e~~~~p-DLVIlDi~ 78 (524)
.+++|||..-.-.+-..+...|.+.|++|+.+....+.++.+... .+ .++..|+.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--~~~~~~~~Dl~ 75 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--GASDIVVANLE 75 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--TCSEEEECCTT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--CCceEEEcccH
Confidence 368999999988888888888877899998655433344444432 36 67777776
No 452
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.06 E-value=4.3e+02 Score=22.88 Aligned_cols=41 Identities=15% Similarity=-0.146 Sum_probs=24.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHH
Q 009824 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVTVTNRAITALKMLR 64 (524)
Q Consensus 23 ~irVLIVDDdp~~~~~L~~~L~~~-gy~V~~a~sg~eALe~L~ 64 (524)
+.+|+|+.-- .+-..+...|.+. |++|+.+..-.+..+.++
T Consensus 39 ~~~v~IiG~G-~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~ 80 (183)
T 3c85_A 39 HAQVLILGMG-RIGTGAYDELRARYGKISLGIEIREEAAQQHR 80 (183)
T ss_dssp TCSEEEECCS-HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH
T ss_pred CCcEEEECCC-HHHHHHHHHHHhccCCeEEEEECCHHHHHHHH
Confidence 4578888754 4444555566666 788776654344444433
No 453
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.00 E-value=4e+02 Score=24.64 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009824 35 CLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (524)
Q Consensus 35 ~~~~L~~~L~~~gy~V~~a~---sg~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLLe~Lr~~~diPVIvlTa~ 105 (524)
+...++..+++.||++..+. +.. +.++.+... .+|-||+--..+... ++++.++ ...+|||++...
T Consensus 38 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~~~~--~~~~~~~-~~~iPvV~~~~~ 109 (293)
T 2iks_A 38 IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQR--QVDAIIVSTSLPPEH--PFYQRWA-NDPFPIVALDRA 109 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCSSCTTC--HHHHTTT-TSSSCEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCCCcH--HHHHHHH-hCCCCEEEECCc
Confidence 34555666777899987553 222 244444443 488877743222212 3444443 357899988654
Done!