Query 009825
Match_columns 524
No_of_seqs 226 out of 1477
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 17:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06464 phosphoenolpyruvate s 100.0 5.4E-62 1.2E-66 550.4 32.0 312 188-523 4-334 (795)
2 PRK06241 phosphoenolpyruvate s 100.0 1.1E-61 2.4E-66 555.2 32.0 304 189-523 3-312 (871)
3 TIGR01418 PEP_synth phosphoeno 100.0 5E-61 1.1E-65 542.9 31.4 308 191-523 2-332 (782)
4 PF01326 PPDK_N: Pyruvate phos 100.0 9.1E-64 2E-68 517.1 2.8 297 200-523 2-303 (327)
5 PRK05878 pyruvate phosphate di 100.0 4E-46 8.6E-51 402.3 22.0 265 188-523 6-298 (530)
6 COG0574 PpsA Phosphoenolpyruva 100.0 1.5E-46 3.3E-51 423.8 18.1 303 191-524 5-322 (740)
7 TIGR01828 pyru_phos_dikin pyru 100.0 4.4E-42 9.6E-47 389.3 21.7 268 189-523 2-338 (856)
8 PRK09279 pyruvate phosphate di 100.0 7.1E-38 1.5E-42 353.9 24.7 240 189-523 4-344 (879)
9 PRK05849 hypothetical protein; 100.0 8.8E-37 1.9E-41 341.6 21.8 211 200-524 4-217 (783)
10 PF00391 PEP-utilizers: PEP-ut 97.1 0.00032 7E-09 57.7 2.8 72 58-134 7-78 (80)
11 PRK08296 hypothetical protein; 96.7 0.0013 2.9E-08 73.3 3.8 98 33-139 503-600 (603)
12 PRK05849 hypothetical protein; 96.2 0.0068 1.5E-07 69.7 5.8 93 34-135 685-777 (783)
13 PRK06241 phosphoenolpyruvate s 95.8 0.011 2.4E-07 69.4 5.5 95 34-139 772-867 (871)
14 PRK05878 pyruvate phosphate di 95.7 0.009 1.9E-07 66.0 3.9 101 30-140 351-452 (530)
15 PRK06354 pyruvate kinase; Prov 95.6 0.011 2.3E-07 66.2 4.1 93 34-135 487-579 (590)
16 PRK09279 pyruvate phosphate di 95.1 0.011 2.3E-07 68.9 2.2 103 32-140 397-508 (879)
17 TIGR01418 PEP_synth phosphoeno 95.0 0.015 3.2E-07 67.4 3.0 95 32-135 357-451 (782)
18 TIGR01828 pyru_phos_dikin pyru 95.0 0.014 2.9E-07 68.1 2.4 102 33-140 392-502 (856)
19 PRK05865 hypothetical protein; 94.5 0.044 9.4E-07 63.9 5.2 96 34-140 740-836 (854)
20 PRK06464 phosphoenolpyruvate s 94.2 0.024 5.2E-07 65.8 2.0 98 33-140 360-460 (795)
21 COG3848 Phosphohistidine swive 94.0 0.2 4.3E-06 43.0 6.6 99 33-140 6-104 (111)
22 PRK11377 dihydroxyacetone kina 92.4 0.12 2.6E-06 56.5 3.9 73 59-135 394-466 (473)
23 PRK11177 phosphoenolpyruvate-p 91.7 0.15 3.2E-06 57.2 3.7 79 59-142 152-231 (575)
24 PRK11061 fused phosphoenolpyru 91.3 0.18 3.8E-06 58.4 3.8 78 59-142 319-397 (748)
25 PRK03955 hypothetical protein; 90.8 1.5 3.3E-05 39.6 8.5 98 33-138 6-126 (131)
26 TIGR01417 PTS_I_fam phosphoeno 89.6 0.32 6.9E-06 54.5 3.9 80 59-142 151-230 (565)
27 COG1080 PtsA Phosphoenolpyruva 86.8 0.69 1.5E-05 51.1 4.1 81 58-142 152-232 (574)
28 COG0574 PpsA Phosphoenolpyruva 83.5 1.3 2.8E-05 51.3 4.6 74 35-114 342-415 (740)
29 COG3605 PtsP Signal transducti 75.5 1.5 3.2E-05 48.6 1.6 71 56-132 323-395 (756)
30 PF02786 CPSase_L_D2: Carbamoy 51.2 36 0.00078 33.2 6.0 40 482-521 135-178 (211)
31 PRK09778 putative antitoxin of 27.7 1.8E+02 0.0039 24.9 5.6 21 235-255 34-54 (97)
32 PF10662 PduV-EutP: Ethanolami 22.1 1.8E+02 0.004 26.6 5.2 63 58-124 61-140 (143)
No 1
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=5.4e-62 Score=550.42 Aligned_cols=312 Identities=25% Similarity=0.304 Sum_probs=273.2
Q ss_pred ceEEEEccccc-CCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHH
Q 009825 188 STGVILLADAD-ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQ 266 (524)
Q Consensus 188 ~~~~~~l~~~~-~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~ 266 (524)
..+++||++.. .+...+||||+||++|.+.. +. .|++||+|||||+++|++||+.+++.+.+..++..
T Consensus 4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~--~~---------~g~pVP~gfvIt~~af~~fl~~~~l~~~i~~~l~~ 72 (795)
T PRK06464 4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNL--SG---------AGVPVPPGFATTAEAYRYFLEQTGLNEKIYELLDG 72 (795)
T ss_pred CceeeehhHcCcccccccChHHHHHHHHHhhh--hc---------cCCCCCCeEEECHHHHHHHHHhCChHHHHHHHHhh
Confidence 35788998874 57888999999999998731 11 58999999999999999999999999999888877
Q ss_pred hhhcCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC------CCcceEEccCCCccCccCCcccccccccCcCCCC
Q 009825 267 IETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFP------ANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPS 340 (524)
Q Consensus 267 l~~~~~~~~~l~~~~~~ir~~I~~~~~p~~l~~~l~~~~~------~~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~~ 340 (524)
++. .+...+++.+++||++|.+.++|+++.++|.+++. ++.+|+||||++.||++++||||||+|++||.
T Consensus 73 ~~~--~d~~~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~-- 148 (795)
T PRK06464 73 LDV--DDVDALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVR-- 148 (795)
T ss_pred cCc--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCC--
Confidence 753 46778999999999999999999999999998763 14689999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCC--eEEEEEecCCCCCCCCeEEEEeccCCCccc
Q 009825 341 NLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPD--LSFVLHTLSPTDRDHNSVEAEIAPGLGETL 418 (524)
Q Consensus 341 ~~~~l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~--~SGVl~T~nP~~g~~~~i~ie~~~GLGe~l 418 (524)
+.+++++|||+||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.++++||++|||||++
T Consensus 149 ~~~~l~~AIk~v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~v 228 (795)
T PRK06464 149 GIDDVLEAVKECFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMV 228 (795)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCccc
Confidence 578999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cccccCCceeEEecccCCc-----eeEEeecccceeEEeeccCCCCC-cEEEEeecC--CCCCCCCCHHHHHHHHHHHHH
Q 009825 419 ASGTRGTPWRLSSGKFDGL-----VRTQAFANFSEEMLVSGAGPADG-VVIRLTVDY--SKKPLTVDPIFRRQLGQRLCS 490 (524)
Q Consensus 419 V~G~~g~p~~~~~~k~~~~-----v~~~~~~~~~~~l~~~~~~~~~g-~~~~~~v~~--~~~~l~~d~~~r~~~~~~La~ 490 (524)
|+|.. +|++|.++|.++. +....++.|...+... +..+ +++.++++. ..++.++|+ .+++|++
T Consensus 229 VsG~v-~pd~~~v~~~~~~~~~~~i~~~~i~~K~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~-----~l~~La~ 299 (795)
T PRK06464 229 VQGAV-NPDEFYVHKPTLKAGKPAIVRRTLGSKKIKMVYD---DGGEHGVKTVDVPEEERNRFSLTDE-----EVLELAK 299 (795)
T ss_pred ccCCc-cCeEEEEecccccccccceeeeeccccceeeeec---cCCCCceeEEeCCHHHhhccCCCHH-----HHHHHHH
Confidence 99985 8999999998765 7778888888887752 2222 255555543 344555554 4799999
Q ss_pred HHHHHHHhhCCCEEEEEEEEC--CeEEEEeeeccc
Q 009825 491 VGFFLERKFGCPQDVEGCLVG--KDIYAVQTRPQP 523 (524)
Q Consensus 491 ~a~~lE~~fg~pqDIEw~i~~--~~l~IlQ~RP~~ 523 (524)
++.+||++||+|||||||+++ ++|||||+||++
T Consensus 300 l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit 334 (795)
T PRK06464 300 QAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET 334 (795)
T ss_pred HHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccc
Confidence 999999999999999999998 789999999987
No 2
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1.1e-61 Score=555.23 Aligned_cols=304 Identities=28% Similarity=0.430 Sum_probs=271.2
Q ss_pred eEEEEccccc-CCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHHh
Q 009825 189 TGVILLADAD-ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQI 267 (524)
Q Consensus 189 ~~~~~l~~~~-~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~l 267 (524)
..+++|.+.. .+...|||||+||++|.+ .|++||+|||||+++|++||+.+++.+.+.+.+..+
T Consensus 3 ~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---------------~G~~VP~gfvi~~~~~~~~l~~~~~~~~i~~~l~~~ 67 (871)
T PRK06241 3 SYVLDFQEIDKTQLPLVGGKGANLGELSR---------------AGIPVPEGFCVTTEAYKKFLEQNEEFDALLDQLSAL 67 (871)
T ss_pred ceEEEhhhcCcccccccChHHHHHHHHHH---------------CCCCCCCeEEecHHHHHHHHHhCCcHHHHHHHHhcC
Confidence 3578887764 577889999999999987 789999999999999999999998877776666555
Q ss_pred hhcCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC---CCcceEEccCCCccCccCCcccccccccCcCCCCcHHH
Q 009825 268 ETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFP---ANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRV 344 (524)
Q Consensus 268 ~~~~~~~~~l~~~~~~ir~~I~~~~~p~~l~~~l~~~~~---~~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~~~~~~ 344 (524)
.. .+...+.+++++||++|.+.++|+++.++|.+++. .+.+++||||++.||++++||||||+|++||. +.++
T Consensus 68 ~~--~~~~~~~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~--~~~~ 143 (871)
T PRK06241 68 KL--EDREQIGEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVI--GKDA 143 (871)
T ss_pred CC--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCC--CHHH
Confidence 43 36678999999999999999999999999998764 45789999999999999999999999999998 6899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCCeEEEEEecCCCCCCCCeEEEEeccCCCccccccccC
Q 009825 345 FQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRG 424 (524)
Q Consensus 345 l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~~SGVl~T~nP~~g~~~~i~ie~~~GLGe~lV~G~~g 424 (524)
+++|||+||||+||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+
T Consensus 144 ~~~ai~~~waS~~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v- 222 (871)
T PRK06241 144 ILQHIRKCWASLFTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV- 222 (871)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CceeEEecccCCceeEEeecccceeEEeeccCCCCCcEEEEeecCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 009825 425 TPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYS--KKPLTVDPIFRRQLGQRLCSVGFFLERKFGCP 502 (524)
Q Consensus 425 ~p~~~~~~k~~~~v~~~~~~~~~~~l~~~~~~~~~g~~~~~~v~~~--~~~l~~d~~~r~~~~~~La~~a~~lE~~fg~p 502 (524)
+|++|.++ ++.+....+++|...++. ..+|++....++.. ..+++++. .+++|++++.+||++||+|
T Consensus 223 ~pd~~~v~--~~~i~~~~i~~k~~~~~~----~~~gg~~~~~~~~~~~~~~~L~~~-----~~~~L~~l~~~ie~~~g~p 291 (871)
T PRK06241 223 SADTYKVR--EGKIIDKTIATKKLAIYA----LKEGGTETKEIEPEQQKSQTLTDE-----QILELARLGRKIEAHFGCP 291 (871)
T ss_pred CCeEEEEe--CCceEEEeccccceEEEe----cCCCceEEEECCHHHhcCCCCCHH-----HHHHHHHHHHHHHHHcCCC
Confidence 89999998 578888889998887653 35677777766654 33555444 5799999999999999999
Q ss_pred EEEEEEEECCeEEEEeeeccc
Q 009825 503 QDVEGCLVGKDIYAVQTRPQP 523 (524)
Q Consensus 503 qDIEw~i~~~~l~IlQ~RP~~ 523 (524)
||||||+++++|||||+||+|
T Consensus 292 qDIEw~~~~~~l~ilQaRPit 312 (871)
T PRK06241 292 QDIEWCLADGTFYILQSRPIT 312 (871)
T ss_pred cceEEEEECCEEEEEEcCCcc
Confidence 999999999999999999997
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=5e-61 Score=542.91 Aligned_cols=308 Identities=27% Similarity=0.347 Sum_probs=268.3
Q ss_pred EEEccccc-CCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009825 191 VILLADAD-ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIET 269 (524)
Q Consensus 191 ~~~l~~~~-~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~l~~ 269 (524)
++||++.. .+...|||||+||++|.+... . .|++||+|||||+++|++||++|++.+.+..+++.++.
T Consensus 2 ~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~--~---------~g~~VP~gfvIt~~af~~fl~~~~l~~~i~~~l~~~~~ 70 (782)
T TIGR01418 2 ILWLEEVRKDDVPLVGGKNASLGEMIQNLS--P---------AGVPVPPGFVVTAEAYRYFLEENGIAQKIRDLLEELDV 70 (782)
T ss_pred eeehhhcCcccccccChHHHHHHHHHhhhh--h---------cCCCCCCeEEEcHHHHHHHHHhCChHHHHHHHHHhcCc
Confidence 67787764 578889999999999987211 1 58999999999999999999999999988887776654
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC---C-----CcceEEccCCCccCccCCcccccccccCcCCCCc
Q 009825 270 AGPEGGELDNLCCQLQELISALQPSEDIIESIERIFP---A-----NAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSN 341 (524)
Q Consensus 270 ~~~~~~~l~~~~~~ir~~I~~~~~p~~l~~~l~~~~~---~-----~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~~~ 341 (524)
.++..+++.+++||++|++.++|+++.++|.+++. . +.+|+||||++.||++++||||||+|++||. +
T Consensus 71 --~~~~~l~~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~--~ 146 (782)
T TIGR01418 71 --EDSEALAAASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVT--G 146 (782)
T ss_pred --CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCC--C
Confidence 36778999999999999999999999999988753 1 2489999999999999999999999999997 5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCC--eEEEEEecCCCCCCCCeEEEEeccCCCcccc
Q 009825 342 LRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPD--LSFVLHTLSPTDRDHNSVEAEIAPGLGETLA 419 (524)
Q Consensus 342 ~~~l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~--~SGVl~T~nP~~g~~~~i~ie~~~GLGe~lV 419 (524)
.+++.+|||+||||+||+||+.||+++|+++++..|||+||+|++++ +|||+||+||.+++++.++||++|||||++|
T Consensus 147 ~~~l~~aik~v~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV 226 (782)
T TIGR01418 147 EEEVLEHVKKCWASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVV 226 (782)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccc
Confidence 78999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccccCCceeEEecccCCc-----eeEEeecccceeEEeeccCCCCCc---EEEEeecC--CCCCCCCCHHHHHHHHHHHH
Q 009825 420 SGTRGTPWRLSSGKFDGL-----VRTQAFANFSEEMLVSGAGPADGV---VIRLTVDY--SKKPLTVDPIFRRQLGQRLC 489 (524)
Q Consensus 420 ~G~~g~p~~~~~~k~~~~-----v~~~~~~~~~~~l~~~~~~~~~g~---~~~~~v~~--~~~~l~~d~~~r~~~~~~La 489 (524)
+|.. +|++|.+++.++. +....++.|...+.+. ++|+ +...+++. ..++.++|+ .+++|+
T Consensus 227 ~G~v-~pD~~~v~r~~~~~~~~~i~~~~~~~k~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~L~~~-----~l~~La 296 (782)
T TIGR01418 227 GGAV-TPDEYVVFKPTLEQGKKAILERTLGSKKIKMVYD----PDGGNVETKIVEVPEEERDAFSLSDE-----EILELA 296 (782)
T ss_pred cCCc-CCeEEEEecccccccccceeeeeccccceEEEEc----cCCCCcceEEEeCCHHHhhccCCCHH-----HHHHHH
Confidence 9985 9999999998765 7777788888877752 2333 44454443 234555554 478999
Q ss_pred HHHHHHHHhhCCCEEEEEEEE--CCeEEEEeeeccc
Q 009825 490 SVGFFLERKFGCPQDVEGCLV--GKDIYAVQTRPQP 523 (524)
Q Consensus 490 ~~a~~lE~~fg~pqDIEw~i~--~~~l~IlQ~RP~~ 523 (524)
+++.+||++||+|||||||++ +++|||||+||++
T Consensus 297 ~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPit 332 (782)
T TIGR01418 297 KLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPET 332 (782)
T ss_pred HHHHHHHHHhCCCceeEEEEECCCCeEEEEEeeccc
Confidence 999999999999999999999 6789999999987
No 4
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=9.1e-64 Score=517.13 Aligned_cols=297 Identities=32% Similarity=0.446 Sum_probs=232.7
Q ss_pred CccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHHhhhcCCCchhHHH
Q 009825 200 DAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDN 279 (524)
Q Consensus 200 ~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~l~~~~~~~~~l~~ 279 (524)
|...|||||+||++|.+ .+++||+|||||+++|++||+++++.+.+..+++.+.. .+...+++
T Consensus 2 d~~~vGgKa~~L~~L~~---------------~g~~VP~gfvIt~~~~~~~l~~~~l~~~i~~~~~~~~~--~~~~~~~~ 64 (327)
T PF01326_consen 2 DASLVGGKAANLAELRR---------------AGVPVPPGFVITTDAFQEFLESNGLREEIEQLLEPLDL--SDREDLQA 64 (327)
T ss_dssp GHHHHHHHHHHHHHHHH---------------TT-S---EEEE-HHHHHHHHTTCCHHHHHHHHHHBE-E--EEEEECSS
T ss_pred ChHHCCHHHHHHHHHHH---------------CCCCCCcEEEecHHHHHHHHHcCChHHHHHHHHhhhcc--ccHHHHHH
Confidence 45568999999999986 78999999999999999999999998888887764432 24556777
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCC----CcceEEccCCCccCccCCcccccccccCcCCCCcHHHHHHHHHHHHHh
Q 009825 280 LCCQLQELISALQPSEDIIESIERIFPA----NAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWAS 355 (524)
Q Consensus 280 ~~~~ir~~I~~~~~p~~l~~~l~~~~~~----~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~~~~~~l~~AIk~VWAS 355 (524)
.++.||++|.+.++|+++.++|.+++.. ..+++||||++.||+.++||||+|+|++|+. +.++|++|||+||||
T Consensus 65 ~~~~i~~~i~~~~lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~--~~~~l~~Aik~v~aS 142 (327)
T PF01326_consen 65 ISKEIRELILSAPLPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVP--GEEELLEAIKQVWAS 142 (327)
T ss_dssp HHTTCCHEEEEET--HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHH--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCC--hHHHHHHHHHHHHhC
Confidence 8899999999999999999999998864 3799999999999999999999999999998 479999999999999
Q ss_pred cCChhHHHHHHHhCCCCcCCceeEEEEeecCCCeEEEEEecCCCCCCCCe-EEEEeccCCCccccccccCCceeEEeccc
Q 009825 356 LYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNS-VEAEIAPGLGETLASGTRGTPWRLSSGKF 434 (524)
Q Consensus 356 ~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~~SGVl~T~nP~~g~~~~-i~ie~~~GLGe~lV~G~~g~p~~~~~~k~ 434 (524)
+||+||+.||+++|+++++..|||+||+||++++|||+||+||.+|++++ ++||+++||||++|+|.. +|++|.+++.
T Consensus 143 ~f~~ra~~yr~~~g~~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~ 221 (327)
T PF01326_consen 143 LFSPRALAYRRRRGIPDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRS 221 (327)
T ss_dssp TTSHHHHHHHHHTT-TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--E
T ss_pred cCCHHHHHHHHhcCCChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999998 999999999999999997 9999999988
Q ss_pred CCceeEEeecccceeEEeeccCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEEEEEECCeE
Q 009825 435 DGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDI 514 (524)
Q Consensus 435 ~~~v~~~~~~~~~~~l~~~~~~~~~g~~~~~~v~~~~~~l~~d~~~r~~~~~~La~~a~~lE~~fg~pqDIEw~i~~~~l 514 (524)
++.+....++.|...++. ..++++.++.++...+ ..+.+.++.+++|++++.+||++||+|||||||+++++|
T Consensus 222 ~~~~~~~~~~~k~~~~~~----~~~~~~~~~~~~~~~~---~~~~l~~~~~~~L~~l~~~le~~~g~p~DIEw~~~~~~l 294 (327)
T PF01326_consen 222 DPRIREREIGQKSVQLVP----DEGGGLEEVDVPEERQ---DSPSLSDEQLQQLAELARKLEEHFGRPQDIEWAIDGGQL 294 (327)
T ss_dssp HHHHHEEE----HCCCCC----CCTTTEECCCHHHHCH---CHHHHSHHHHHHHHHHHHHHHHHHTS-EEEEEEEETTEE
T ss_pred CcchhhhhcCCceEEEEE----cCCCceEEEeCchhhh---hhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEEEEECCEE
Confidence 776666777777777663 3567776665542211 234556677899999999999999999999999999999
Q ss_pred EEEeeeccc
Q 009825 515 YAVQTRPQP 523 (524)
Q Consensus 515 ~IlQ~RP~~ 523 (524)
||||+||++
T Consensus 295 ~iLQaRPi~ 303 (327)
T PF01326_consen 295 YILQARPIT 303 (327)
T ss_dssp EEEEEEE--
T ss_pred EEEEecccc
Confidence 999999996
No 5
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=4e-46 Score=402.33 Aligned_cols=265 Identities=19% Similarity=0.194 Sum_probs=219.3
Q ss_pred ceEEEEccccc-CCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcC-----ChhHHH
Q 009825 188 STGVILLADAD-ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSK-----CMDTFV 261 (524)
Q Consensus 188 ~~~~~~l~~~~-~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~-----~~~~i~ 261 (524)
..++++|++.. ...+.+|||++||++|++ .+++||+|||||+.+|++|+++++ +++.+.
T Consensus 6 ~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---------------~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~ 70 (530)
T PRK05878 6 ENAVVLLDGGANQPRELLGGKGHGIDMMRR---------------LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVL 70 (530)
T ss_pred CceEEECCCCChhhhhccCHHHHhHHHHHH---------------CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHH
Confidence 35799998874 567789999999999987 689999999999999999999987 777777
Q ss_pred HHHHHhhhcC-------CCchhHHHHHHH------HHHHHHhcCCCHHHHHHHHHhCCCCcceEEccCCCccCccCCccc
Q 009825 262 SFLEQIETAG-------PEGGELDNLCCQ------LQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAA 328 (524)
Q Consensus 262 ~ll~~l~~~~-------~~~~~l~~~~~~------ir~~I~~~~~p~~l~~~l~~~~~~~~~vaVRSSa~~ED~~~~S~A 328 (524)
..++.++... .++..+...+.. +++.|+++.+|+++.++|.+..+. |+..|| ...+|+
T Consensus 71 ~~l~~le~~~g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~--------~~~a~D-~~~rF~ 141 (530)
T PRK05878 71 DRMRWLEAETGRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGD--------PDFAAD-TRRRFT 141 (530)
T ss_pred HHHHHHHHHhhhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCC--------chhhhh-hhhhHH
Confidence 7777665421 022223333344 899999999999999999986422 688999 679999
Q ss_pred ccccccCcC----CCCcHHHHHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCC-----eEEEEEecCCC
Q 009825 329 GLYESIPNV----NPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPD-----LSFVLHTLSPT 399 (524)
Q Consensus 329 G~~~S~lnv----~~~~~~~l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~-----~SGVl~T~nP~ 399 (524)
|+|.+++++ +.+..++|..|||.||+|+||+||+.||+++|++++ ..|||+||+||.++ .|||+||+||.
T Consensus 142 ~~y~~vv~~~~~~p~dp~~qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~-~~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~ 220 (530)
T PRK05878 142 EMYRRIVGSGSPPPDDPYEQLRAAIEAVFASWNSPRAVAYRRHHGLDDD-GGTAVVVQAMVFGNLDANSGTGVLFSRNPI 220 (530)
T ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHHHHHcCCHHHHHHHHHcCCCcc-cCcEEEEEeCccCCCCCCcceEEEEeCCCC
Confidence 999999986 222358999999999999999999999999999875 48999999999764 58999999999
Q ss_pred CCCCCeEEEEeccCCCccccccccCCceeEEecccCCceeEEeecccceeEEeeccCCCCCcEEEEeecCCCCCCCCCHH
Q 009825 400 DRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPI 479 (524)
Q Consensus 400 ~g~~~~i~ie~~~GLGe~lV~G~~g~p~~~~~~k~~~~v~~~~~~~~~~~l~~~~~~~~~g~~~~~~v~~~~~~l~~d~~ 479 (524)
+++++.+.+.+++|+||.+|+|.. +|+.|...+. .. +
T Consensus 221 tg~~~~~~~~~~~GlGe~vVsG~~-~p~~~~~~~~------------------------------------~~-----p- 257 (530)
T PRK05878 221 TGANEPFGEWLPGGQGEDVVSGLV-DVAPITALRD------------------------------------EQ-----P- 257 (530)
T ss_pred CCCCcEEEEEcCCCCCHHHhcCCc-CCcchhhhcc------------------------------------cC-----H-
Confidence 999888888889999999999985 6655533211 00 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEEEEEECCeEEEEeeeccc
Q 009825 480 FRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQP 523 (524)
Q Consensus 480 ~r~~~~~~La~~a~~lE~~fg~pqDIEw~i~~~~l~IlQ~RP~~ 523 (524)
..+++|++++..||++||.||||||++++++|||||+||..
T Consensus 258 ---~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~~ 298 (530)
T PRK05878 258 ---AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSAK 298 (530)
T ss_pred ---HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeeccc
Confidence 24689999999999999999999999999999999999975
No 6
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=423.79 Aligned_cols=303 Identities=26% Similarity=0.373 Sum_probs=251.7
Q ss_pred EEEcccc-cCCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009825 191 VILLADA-DADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIET 269 (524)
Q Consensus 191 ~~~l~~~-~~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~l~~ 269 (524)
++++.+. ..+..++|||++||++|.+ .|++||+||||++.+|++|++.+++.+.+...+..+..
T Consensus 5 ~~~~~e~~~~~~~lvGgKga~L~Em~~---------------~Gl~VP~GF~itt~a~~~f~~~~~~~~~~~~~l~~~~~ 69 (740)
T COG0574 5 ILWLDEVKLEDVGLVGGKGASLGEMLK---------------MGLPVPPGFAITSEAYRYFLKENGLADKILKILSALDL 69 (740)
T ss_pred ccchhhcCcchhhhcCCccCCHHHHHh---------------CCCCCCCeEEEeHHHHHHHHhccchHHHHHHHhcCCCc
Confidence 4555554 2689999999999999987 68999999999999999999999887777766665443
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCC-------CcceEEccCCCccCccCCcccccccccCcCCCCcH
Q 009825 270 AGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPA-------NAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNL 342 (524)
Q Consensus 270 ~~~~~~~l~~~~~~ir~~I~~~~~p~~l~~~l~~~~~~-------~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~~~~ 342 (524)
. +...++.....++..|+..++|.++.+++.+++.. ...++||||++.||+++.|||||++|++|+. +.
T Consensus 70 ~--~~~~l~~~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~--~~ 145 (740)
T COG0574 70 N--DNVELEFRSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVD--GI 145 (740)
T ss_pred c--hhHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcC--CH
Confidence 2 44478888999999999999999999999987632 2479999999999999999999999999998 68
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCC--eEEEEEecCCCCCCCCeEEEEeccCCCccccc
Q 009825 343 RVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPD--LSFVLHTLSPTDRDHNSVEAEIAPGLGETLAS 420 (524)
Q Consensus 343 ~~l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~--~SGVl~T~nP~~g~~~~i~ie~~~GLGe~lV~ 420 (524)
++++.+|++||||+||+||+.||.++|++|..+.|||+||.||.++ .|||+||+||.||..+.+.+++.+||||.+|+
T Consensus 146 e~l~~~i~~~~aSl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~ 225 (740)
T COG0574 146 EDLLEAIKKCWASLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVD 225 (740)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEE
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cccCCceeEEecccCCceeEEeecccceeEEeeccCCCCCc---EEEEeec--CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009825 421 GTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGV---VIRLTVD--YSKKPLTVDPIFRRQLGQRLCSVGFFL 495 (524)
Q Consensus 421 G~~g~p~~~~~~k~~~~v~~~~~~~~~~~l~~~~~~~~~g~---~~~~~v~--~~~~~l~~d~~~r~~~~~~La~~a~~l 495 (524)
|.+ +|+.|.+.|++. ....++++..++.. ....++ .+...++ ...+..+ .+.++.+|++++..+
T Consensus 226 G~v-tpd~~~~~k~~~--~~~~~~~~~~~~i~---~~~~~e~~~~~~~ev~~~~~~~~~l-----~~~~i~~la~~~~~i 294 (740)
T COG0574 226 GQV-TPDEYYVSKDTL--VEKALPSKLIKLIY---DADKLEGHRARIEEIEDEFTDAFSL-----SDEEIKRLAKLAIKI 294 (740)
T ss_pred EEE-cCceEEEeccch--hhhhhhHHHHHHHH---HhhcccceeeeeccCChHHhhhhhc-----cHHHHHHHHHHHHHH
Confidence 998 999999998754 12233444433332 111111 1112222 1222222 345689999999999
Q ss_pred HHhhCCCEEEEEEEECCeEEEEeeecccC
Q 009825 496 ERKFGCPQDVEGCLVGKDIYAVQTRPQPH 524 (524)
Q Consensus 496 E~~fg~pqDIEw~i~~~~l~IlQ~RP~~~ 524 (524)
|.+|+.||||||++++ ++||+|+||.+.
T Consensus 295 e~~~~~p~diEw~id~-~~~ilq~rP~t~ 322 (740)
T COG0574 295 EKHYGRPMDIEWAIDG-KLYILQARPETV 322 (740)
T ss_pred HHhhCCchhhhhhhcC-ceEEEEecCccc
Confidence 9999999999999998 999999999863
No 7
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=4.4e-42 Score=389.28 Aligned_cols=268 Identities=19% Similarity=0.231 Sum_probs=219.7
Q ss_pred eEEEEccccc-CCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcC-----ChhHHHH
Q 009825 189 TGVILLADAD-ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSK-----CMDTFVS 262 (524)
Q Consensus 189 ~~~~~l~~~~-~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~-----~~~~i~~ 262 (524)
.++++|++.. .+...+|||++||++|.+ .+++||+||+||+.+|++|+++++ +++.+..
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---------------~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~ 66 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---------------LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKE 66 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---------------CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHH
Confidence 3688888863 567789999999999987 689999999999999999999998 7888888
Q ss_pred HHHHhhhc-------CCCchhHHHHHH------HHHHHHHhcCCCHHHHHHHHHhCC----------------CCcceEE
Q 009825 263 FLEQIETA-------GPEGGELDNLCC------QLQELISALQPSEDIIESIERIFP----------------ANAHLIV 313 (524)
Q Consensus 263 ll~~l~~~-------~~~~~~l~~~~~------~ir~~I~~~~~p~~l~~~l~~~~~----------------~~~~vaV 313 (524)
.++.++.. ..++..+...+. .++++|+++.+|+++.++|.+..+ +...+.|
T Consensus 67 ~~~~le~~~g~~fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v 146 (856)
T TIGR01828 67 ALTLLEEKTGKKFGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGI 146 (856)
T ss_pred HHHHHHHHhCcccCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCC
Confidence 88877631 112333434444 799999999999999999987321 2356789
Q ss_pred ccC-------------CCccCccCCc----------cccccccc-----CcCCCCcHHHHHHHHHHHHHhcCChhHHHHH
Q 009825 314 RSS-------------ANVEDLAGMS----------AAGLYESI-----PNVNPSNLRVFQNAVARVWASLYTRRAVLSR 365 (524)
Q Consensus 314 RSS-------------a~~ED~~~~S----------~AG~~~S~-----lnv~~~~~~~l~~AIk~VWAS~~~~rA~~yR 365 (524)
||| +..|| .++| |+|+|.+. ++++ .++|..||+.||||+||+||+.||
T Consensus 147 ~~~~f~~~~~~~~~~~~~~~d-~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p---~~qL~~Ai~~V~aS~~s~rA~~YR 222 (856)
T TIGR01828 147 PHELFEQILEAMKEEKGVKLD-TDLTADDLKELIEKYKAIYREATGKPFPQDP---KEQLELAIKAVFDSWNNPRAIVYR 222 (856)
T ss_pred CchhHHHHHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHcCChHHHHHH
Confidence 999 88899 6899 99999997 6654 899999999999999999999999
Q ss_pred HHhCCCCcCCceeEEEEeecCCC-----eEEEEEecCCCCCCCCeEEEEec-cCCCccccccccCCceeEEecccCCcee
Q 009825 366 RAAGVSQKDATMAVLVQEMLSPD-----LSFVLHTLSPTDRDHNSVEAEIA-PGLGETLASGTRGTPWRLSSGKFDGLVR 439 (524)
Q Consensus 366 ~~~Gi~~~~~~MAVLVQ~mV~a~-----~SGVl~T~nP~~g~~~~i~ie~~-~GLGe~lV~G~~g~p~~~~~~k~~~~v~ 439 (524)
+.+|++++ ..|||+||+||.++ .|||+||+||.++++. ++++.. .|+||.+|+|.. +|+.|...+
T Consensus 223 ~~~gi~~~-~~~aV~VQ~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~~------ 293 (856)
T TIGR01828 223 RLNDIPED-WGTAVNIQSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAME------ 293 (856)
T ss_pred HhcCCCcc-cCcEEEEEEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHhh------
Confidence 99999986 89999999999664 7999999999999754 555544 479999999985 555442200
Q ss_pred EEeecccceeEEeeccCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEEEEEECCeEEEEee
Q 009825 440 TQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQT 519 (524)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~~~g~~~~~~v~~~~~~l~~d~~~r~~~~~~La~~a~~lE~~fg~pqDIEw~i~~~~l~IlQ~ 519 (524)
. . .+ +.+++|++++..||++||.||||||++++++|||||+
T Consensus 294 ---------~-------------------------~-~p----~~~~~L~~~a~~lE~~fg~pqDIEfai~~g~L~iLQ~ 334 (856)
T TIGR01828 294 ---------A-------------------------D-MP----DVYKELLDIAEKLEGHYRDMQDIEFTIERGKLYMLQT 334 (856)
T ss_pred ---------h-------------------------c-Ch----HHHHHHHHHHHHHHHHcCCcccceEEEECCEEEEEEe
Confidence 0 0 01 2478999999999999999999999999889999999
Q ss_pred eccc
Q 009825 520 RPQP 523 (524)
Q Consensus 520 RP~~ 523 (524)
||..
T Consensus 335 RP~k 338 (856)
T TIGR01828 335 RNGK 338 (856)
T ss_pred ecCC
Confidence 9964
No 8
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=7.1e-38 Score=353.92 Aligned_cols=240 Identities=23% Similarity=0.277 Sum_probs=188.3
Q ss_pred eEEEEccc----c-cCCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCC-hhHHHH
Q 009825 189 TGVILLAD----A-DADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKC-MDTFVS 262 (524)
Q Consensus 189 ~~~~~l~~----~-~~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~-~~~i~~ 262 (524)
.+++++++ . ..+.+++|||++||++|.+ .|+|||+||+||+++|++|++..+. .+.
T Consensus 4 ~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---------------~glpVPpgF~itt~ac~~~~~~~~~~~~~--- 65 (879)
T PRK09279 4 KYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---------------LGLPVPPGFTITTEACNEYYANGKKLPEG--- 65 (879)
T ss_pred ceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---------------CCCCCCCcEEEcHHHHHHHHhcCccCcHH---
Confidence 46788844 2 2577899999999999987 6899999999999999999987642 111
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCC-C--cceEEccCCCccCccCCcccccccccCcCCC
Q 009825 263 FLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPA-N--AHLIVRSSANVEDLAGMSAAGLYESIPNVNP 339 (524)
Q Consensus 263 ll~~l~~~~~~~~~l~~~~~~ir~~I~~~~~p~~l~~~l~~~~~~-~--~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~ 339 (524)
+ ..++++.|. .|.+...+.|+. + ..|.|||+|. .|++|+++|+||+..
T Consensus 66 --------------l---~~~i~~~l~------~lE~~~g~~fg~~~~PLLvSVRSga~------~SmPGmmdTiLNlGl 116 (879)
T PRK09279 66 --------------L---KEEVKEALA------KLEELTGKKFGDPENPLLVSVRSGAR------VSMPGMMDTVLNLGL 116 (879)
T ss_pred --------------H---HHHHHHHHH------HHHHHhCcccCCCCCceeEEEecCCC------CCCCCcchhhhcCCC
Confidence 1 122333222 133334445643 2 3589999985 899999999999965
Q ss_pred Cc------------------------------------------------------------------------------
Q 009825 340 SN------------------------------------------------------------------------------ 341 (524)
Q Consensus 340 ~~------------------------------------------------------------------------------ 341 (524)
+|
T Consensus 117 nd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~ 196 (879)
T PRK09279 117 NDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEEILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEET 196 (879)
T ss_pred CHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHh
Confidence 43
Q ss_pred --------HHHHHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCC-----eEEEEEecCCCCCCCCeEEE
Q 009825 342 --------LRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPD-----LSFVLHTLSPTDRDHNSVEA 408 (524)
Q Consensus 342 --------~~~l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~-----~SGVl~T~nP~~g~~~~i~i 408 (524)
.++|+.||+.||+|+||+||+.||+.+|++++ ..|||+||+||.++ .|||+||+||.||+++ .++
T Consensus 197 g~~fp~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~-~~G 274 (879)
T PRK09279 197 GKPFPQDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-WGTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEKK-LYG 274 (879)
T ss_pred CCCCCCChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-cCceEEEEeccccCCCCCcceEEEEeCCCCCCCCc-eeE
Confidence 46899999999999999999999999999985 99999999999766 6999999999999864 455
Q ss_pred Ee-ccCCCccccccccCCceeEEecccCCceeEEeecccceeEEeeccCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHH
Q 009825 409 EI-APGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQR 487 (524)
Q Consensus 409 e~-~~GLGe~lV~G~~g~p~~~~~~k~~~~v~~~~~~~~~~~l~~~~~~~~~g~~~~~~v~~~~~~l~~d~~~r~~~~~~ 487 (524)
|. +.|+||.+|+|.+ +|+.+.. +- + . . .+.+++
T Consensus 275 e~l~~aqGedVVsG~~-tp~~~~~------------------l~--------------------~--~-~----p~~~~~ 308 (879)
T PRK09279 275 EFLINAQGEDVVAGIR-TPQPIPS------------------LE--------------------E--A-M----PEVYAE 308 (879)
T ss_pred EEecCCCChhhhcCcc-CcchhHH------------------Hh--------------------h--c-C----hHHHHH
Confidence 54 6799999999986 6654410 00 0 0 0 124789
Q ss_pred HHHHHHHHHHhhCCCEEEEEEEECCeEEEEeeeccc
Q 009825 488 LCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQP 523 (524)
Q Consensus 488 La~~a~~lE~~fg~pqDIEw~i~~~~l~IlQ~RP~~ 523 (524)
|++++..||++||.||||||++++++|||||+||..
T Consensus 309 L~~~~~~LE~~f~~pqDIEftie~g~L~iLQtRp~k 344 (879)
T PRK09279 309 LVDIAKKLEKHYRDMQDIEFTIERGKLYMLQTRNGK 344 (879)
T ss_pred HHHHHHHHHHHhCCCeeeEEEEECCEEEEEEeCCcc
Confidence 999999999999999999999999999999999975
No 9
>PRK05849 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=341.60 Aligned_cols=211 Identities=25% Similarity=0.238 Sum_probs=165.1
Q ss_pred CccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHHhhhcCCCchhHHH
Q 009825 200 DAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDN 279 (524)
Q Consensus 200 ~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~l~~~~~~~~~l~~ 279 (524)
..-.+|+||+||++|+++. .+++||+++++|...+.+ + .
T Consensus 4 ~~~~~~~KA~tL~~L~~~~-------------~~~~i~~~~v~~~~e~~~-----------------------~---~-- 42 (783)
T PRK05849 4 AELFFQTKAETLANLQPIL-------------KKAKILPLLLFSVREWLS-----------------------N---K-- 42 (783)
T ss_pred cccccchHHHHHHHHHhhh-------------cCCCCCCeEEeCHHhhcc-----------------------C---H--
Confidence 4557899999999998852 689999999998753211 1 1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCCCcceEEccCCCccCccCCcccccccccCcCCCCcHHHHHHHHHHHHHhcCCh
Q 009825 280 LCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTR 359 (524)
Q Consensus 280 ~~~~ir~~I~~~~~p~~l~~~l~~~~~~~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~~~~~~l~~AIk~VWAS~~~~ 359 (524)
+.+.+.|...| .+.+|+||||++.||+.++||||+|+|++||+..+.+++..||++||||+++
T Consensus 43 ---------------~~~~~~i~~~~-~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~- 105 (783)
T PRK05849 43 ---------------DKVLEEIQNSF-PADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT- 105 (783)
T ss_pred ---------------HHHHHHHHHhc-CCCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-
Confidence 11223334444 3568999999999999999999999999999977677999999999999776
Q ss_pred hHHHHHHHhCCCCcCCceeEEEEeecC-CCeEEEEEecCCCCCCCCeEEEEeccCCCccccccccCCceeEEecccCCce
Q 009825 360 RAVLSRRAAGVSQKDATMAVLVQEMLS-PDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLV 438 (524)
Q Consensus 360 rA~~yR~~~Gi~~~~~~MAVLVQ~mV~-a~~SGVl~T~nP~~g~~~~i~ie~~~GLGe~lV~G~~g~p~~~~~~k~~~~v 438 (524)
+ ..|+|+||+||. +..|||+||+||.+|++..+....++|+||.||+|.. +|.++.+.+.+
T Consensus 106 ----------~----~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--- 167 (783)
T PRK05849 106 ----------S----KDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--- 167 (783)
T ss_pred ----------C----CCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---
Confidence 2 238999999998 6999999999999998666544455899999999996 55444332110
Q ss_pred eEEeecccceeEEeeccCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CEEEEEEE-ECCeEEE
Q 009825 439 RTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGC-PQDVEGCL-VGKDIYA 516 (524)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~~~g~~~~~~v~~~~~~l~~d~~~r~~~~~~La~~a~~lE~~fg~-pqDIEw~i-~~~~l~I 516 (524)
.+.+.+ +.+++|++++++||++||+ ||||||++ .+++|||
T Consensus 168 ---------------------------------~~~l~p-----~~~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~l 209 (783)
T PRK05849 168 ---------------------------------ALVFKP-----PRLKKLIELIRELEALFGCDFLDIEFAIDEKEELYI 209 (783)
T ss_pred ---------------------------------cccCCH-----HHHHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEE
Confidence 001112 2478999999999999986 99999999 5677999
Q ss_pred EeeecccC
Q 009825 517 VQTRPQPH 524 (524)
Q Consensus 517 lQ~RP~~~ 524 (524)
||+||+++
T Consensus 210 LQ~RPi~~ 217 (783)
T PRK05849 210 LQVRPITV 217 (783)
T ss_pred EEccCCCc
Confidence 99999874
No 10
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=97.12 E-value=0.00032 Score=57.74 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=51.2
Q ss_pred CCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEEEc
Q 009825 58 SGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEAS 134 (524)
Q Consensus 58 ~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~~~ 134 (524)
..++++||+++..+.++ ++....+++||| +..+..+||.++.||++|||.+..-+ +.. ..-.+|.+|.+..+
T Consensus 7 ~~~~~~IlV~~~~~p~~-~~~~~~~~~Giv-~~~Gg~~SH~aIlAr~~giP~ivg~~-~~~--~~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 7 KLPEGVILVAEELTPSD-LALDLQRVAGIV-TEEGGPTSHAAILARELGIPAIVGVG-DAT--EAIKDGDWVTLDGN 78 (80)
T ss_dssp CTTSTEEEEESS--TTC-HHSHHTTSSEEE-ESSSSTTSHHHHHHHHTT-EEEESTT-THH--HHSCTTEEEEEETT
T ss_pred cCCCCEEEEECCCCHHH-HhcchhheEEEE-EEcCCccchHHHHHHHcCCCEEEeec-cHh--hccCCCCEEEEECC
Confidence 45678999999988884 553347999998 56668899999999999999997765 222 22334888877543
No 11
>PRK08296 hypothetical protein; Provisional
Probab=96.67 E-value=0.0013 Score=73.27 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=72.2
Q ss_pred eEeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEe
Q 009825 33 DVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTC 112 (524)
Q Consensus 33 ~~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~ 112 (524)
..+++|.+.|.+++|..... . ...+.+.||++...+.. .+|.- ..+.|||| ..+..+||.++.||++|||-+.+
T Consensus 503 ~~~s~G~v~G~vrvv~~~~~--~-~~~~~g~ILV~~~tdP~-~~~~~-~~~~GiVt-e~Gg~~SHaAIvARe~GIPaVvg 576 (603)
T PRK08296 503 FAASPGVVEGPARVIRSADE--L-SEVQEGEILVCPVTSPS-WAPIF-AKIKATVT-DIGGVMSHAAIVCREYGLPAVVG 576 (603)
T ss_pred eecCCCeEEEEEEEeCCHHH--H-HhccCceEEEeCCCCHH-HHHHH-HHheEEEE-ecCCCcchHHHHHHHcCCCEEEc
Confidence 35679999999999977432 1 24567799999988877 47764 78999985 45678999999999999998866
Q ss_pred cCchhHHHHHhhcCCeEEEEEcCCceE
Q 009825 113 EDDEKVSDIERLAGKYVRLEASSTCVN 139 (524)
Q Consensus 113 ~d~~~~~~l~~~~g~~V~l~~~~~~~~ 139 (524)
-.. ... +-.+|..|.+..+..-+.
T Consensus 577 v~~-at~--~l~dG~~V~vDg~~G~V~ 600 (603)
T PRK08296 577 TGN-ATK--RIKTGQRLRVDGTKGVVT 600 (603)
T ss_pred Ccc-Hhh--hcCCCCEEEEECCCCEEE
Confidence 532 221 134699998877754443
No 12
>PRK05849 hypothetical protein; Provisional
Probab=96.17 E-value=0.0068 Score=69.69 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=65.1
Q ss_pred EeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEec
Q 009825 34 VLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCE 113 (524)
Q Consensus 34 ~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~ 113 (524)
.++||.+.|.+++++.-. ....+..||++.+++-.- .|.-..+++||| +..+...||.+++||.+|||-+.--
T Consensus 685 ~is~g~v~g~v~v~~~~~-----~~~~~G~Ilv~~~tdPg~-~~lf~~~i~g~V-te~Gg~~SH~AI~ARe~gIPavvg~ 757 (783)
T PRK05849 685 FITQKRVEATVADLDNDN-----DDDLEGKIVCIENADPGY-DWLFTKGIAGLI-TCYGGANSHMAIRAAELGLPAVIGV 757 (783)
T ss_pred CccCCEEEEEEEEecChh-----hcCCCCCEEEeCCCCccc-hHHHhhheeEEE-EcCCCcccHHHHHHHHcCCCEEEcc
Confidence 379999999999987631 122245899999887742 221124799998 6677889999999999999998554
Q ss_pred CchhHHHHHhhcCCeEEEEEcC
Q 009825 114 DDEKVSDIERLAGKYVRLEASS 135 (524)
Q Consensus 114 d~~~~~~l~~~~g~~V~l~~~~ 135 (524)
.....+.+ .+|+.|.+....
T Consensus 758 ~~~~~~~~--~~g~~v~vDg~~ 777 (783)
T PRK05849 758 GEELFEKW--LKAKRILLDCAS 777 (783)
T ss_pred Ccchhhhc--cCCCEEEEECCC
Confidence 22213222 248888887664
No 13
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.81 E-value=0.011 Score=69.40 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=71.4
Q ss_pred EeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEec
Q 009825 34 VLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCE 113 (524)
Q Consensus 34 ~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~ 113 (524)
.+++|.+.|.++++..... .......||++...++. ..|.- ..+.||| +..+..+||.+|.||+.|||-++.-
T Consensus 772 ~~~~G~v~G~v~v~~~~~~----~~~~~g~ILV~~~~~p~-~~~~~-~~~~giv-~~~Gg~~sH~aIvare~gIPavv~~ 844 (871)
T PRK06241 772 PVSSGVVEGRARVILNPED----ADLEKGDILVTAFTDPG-WTPLF-VSIKGLV-TEVGGLMTHGAVIAREYGIPAVVGV 844 (871)
T ss_pred ecCCCeEEEEEEEECCHHH----cCCCCCeEEEecCCCHH-HHHHH-HhceEEE-EcCCCcchHHHHHHHhcCCCEEEcc
Confidence 3789999999999876432 13556689999999995 56654 6899997 6678889999999999999988654
Q ss_pred CchhHHHHHhh-cCCeEEEEEcCCceE
Q 009825 114 DDEKVSDIERL-AGKYVRLEASSTCVN 139 (524)
Q Consensus 114 d~~~~~~l~~~-~g~~V~l~~~~~~~~ 139 (524)
. +. .+.+ +|..|.+.....-+.
T Consensus 845 ~-~~---~~~l~~G~~v~lDg~~G~v~ 867 (871)
T PRK06241 845 E-NA---TKLIKDGQRIRVDGTEGYVE 867 (871)
T ss_pred c-cH---HhhcCCCCEEEEECCCCEEE
Confidence 2 22 2333 599999987754443
No 14
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=95.70 E-value=0.009 Score=65.97 Aligned_cols=101 Identities=24% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCceEeeceeeeEEEEE-ecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCcee
Q 009825 30 QGWDVLVPGAAVGKLVQ-VDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVV 108 (524)
Q Consensus 30 ~~~~~i~~g~a~G~l~~-v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~ 108 (524)
..=..++||.+.|+++. .+.... -.....+.||++...+-+ +++.- ..+.||||. .+-..||.++.||++|||
T Consensus 351 ~~G~~as~G~a~G~V~~~~~~~~~---~~~~~~g~ILV~~~t~P~-~~~~~-~~a~GIVte-~Gg~tSHaAivARelgiP 424 (530)
T PRK05878 351 AKGLPACPGVVSGTAYTDVDEALD---AADRGEPVILVRDHTRPD-DVHGM-LAAQGIVTE-VGGATSHAAVVSRELGRV 424 (530)
T ss_pred ccCeeccCceEEEEEEECHHHHHH---HhhccCCEEEEECCCCHH-HHhhh-HhheEEEEc-cCCccchHHHHHHHcCCC
Confidence 34467899999999864 222110 124456789999988887 57764 679999855 556899999999999999
Q ss_pred EEEecCchhHHHHHhhcCCeEEEEEcCCceEe
Q 009825 109 FVTCEDDEKVSDIERLAGKYVRLEASSTCVNL 140 (524)
Q Consensus 109 ~a~~~d~~~~~~l~~~~g~~V~l~~~~~~~~~ 140 (524)
-+..-... ...+ .+|..|.+.... |..+
T Consensus 425 ~VvG~~~~-~~~~--~~G~~VtvDg~~-G~V~ 452 (530)
T PRK05878 425 AVVGCGAG-VAAA--LAGKEITVDGYE-GEVR 452 (530)
T ss_pred EEEcccch-hhcc--CCCCEEEEECCC-CEEE
Confidence 99765322 2223 469999887764 5444
No 15
>PRK06354 pyruvate kinase; Provisional
Probab=95.60 E-value=0.011 Score=66.22 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=70.3
Q ss_pred EeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEec
Q 009825 34 VLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCE 113 (524)
Q Consensus 34 ~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~ 113 (524)
..+||.+.|.++++..... ....+.+.||+++..+. +.+|. ...+.|||+. .+...||.++.||++|||-+.+-
T Consensus 487 ~as~G~~~G~v~~~~~~~~---~~~~~~~~ILV~~~~~P-~~~~~-~~~~~GiVt~-~Gg~tSH~AIvAR~lgIPaVvg~ 560 (590)
T PRK06354 487 GIGRKSVSGKARVAKTAAE---VAKVNEGDILVTPSTDA-DMIPA-IEKAAAIITE-EGGLTSHAAVVGLRLGIPVIVGV 560 (590)
T ss_pred ccccccccceEEEeCChHh---hccCCCCeEEEeCCCCH-HHHHh-HHhcEEEEEe-cCCCcchHHHHHHhcCCCEEEec
Confidence 3477888999888876332 14667889999999988 46887 5899999955 56789999999999999999766
Q ss_pred CchhHHHHHhhcCCeEEEEEcC
Q 009825 114 DDEKVSDIERLAGKYVRLEASS 135 (524)
Q Consensus 114 d~~~~~~l~~~~g~~V~l~~~~ 135 (524)
... .. .-.+|.+|.+....
T Consensus 561 ~~~-~~--~l~~G~~v~vDg~~ 579 (590)
T PRK06354 561 KNA-TS--LIKDGQIITVDAAR 579 (590)
T ss_pred cch-hh--ccCCCCEEEEECCC
Confidence 322 21 12458998887764
No 16
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.11 E-value=0.011 Score=68.93 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=68.9
Q ss_pred ceEeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEE
Q 009825 32 WDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVT 111 (524)
Q Consensus 32 ~~~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~ 111 (524)
=...|||.|+|++++... +... -.....+.||+....+-+ +++.- ..+.|||| ..+-..||.+|-||++|+|-++
T Consensus 397 G~~aspGaa~G~v~~~~~-~a~~-~~~~~~~~ILV~~et~P~-di~~m-~~a~GIvT-~~GG~TSHAAIVAR~lGiP~Vv 471 (879)
T PRK09279 397 GLPASPGAATGKIVFTAD-EAEA-LAARGEKVILVRPETSPE-DIHGM-HAAEGILT-ARGGMTSHAAVVARGMGKPCVV 471 (879)
T ss_pred CcccCCCeEEEEEEEChH-HHHH-hhccCCCEEEEECCCCHH-HHhhh-hHeeEEEE-eCCCccchHHHHHHHcCCCEEe
Confidence 356799999999877523 1111 123456788888877776 57753 46889985 5667899999999999999987
Q ss_pred ecCchhHHH---------HHhhcCCeEEEEEcCCceEe
Q 009825 112 CEDDEKVSD---------IERLAGKYVRLEASSTCVNL 140 (524)
Q Consensus 112 ~~d~~~~~~---------l~~~~g~~V~l~~~~~~~~~ 140 (524)
.-..-.++. -.-.+|.+|.+..+. |..+
T Consensus 472 G~~~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~-G~V~ 508 (879)
T PRK09279 472 GAGALRIDEKAKTFTVGGGTLKEGDVITIDGST-GEVY 508 (879)
T ss_pred ccCcceEecccCEEEECCEEecCCCEEEEECCC-CEEE
Confidence 543321110 112358888887774 4444
No 17
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=95.02 E-value=0.015 Score=67.41 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=71.9
Q ss_pred ceEeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEE
Q 009825 32 WDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVT 111 (524)
Q Consensus 32 ~~~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~ 111 (524)
=..++||.+.|.++++..... . .....+.||++...+-+ +++.- .++.|||| ..+...||.++.||++|||.+.
T Consensus 357 G~~~~~G~~~G~v~v~~~~~d--~-~~~~~g~ILV~~~~~p~-~~~~l-~~~~giVt-e~Gg~tSH~AivAR~lgIPavv 430 (782)
T TIGR01418 357 GRAAGPGIASGKVKVIFDLKE--M-DKFEEGDILVTDMTDPD-WEPAM-KRASAIVT-NEGGMTCHAAIVARELGIPAVV 430 (782)
T ss_pred CcccCCCceEEEEEEeCCHHH--H-HhcCCCeEEEECCCCHH-HHHHh-HhheEEEE-cCCCCccHHHHHHHhcCCCEEE
Confidence 356899999999999987443 1 35677789999988887 57764 69999995 4566899999999999999886
Q ss_pred ecCchhHHHHHhhcCCeEEEEEcC
Q 009825 112 CEDDEKVSDIERLAGKYVRLEASS 135 (524)
Q Consensus 112 ~~d~~~~~~l~~~~g~~V~l~~~~ 135 (524)
.- .+....+ .+|..|.+....
T Consensus 431 g~-~~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 431 GT-GDATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred cc-cchhhcc--cCCCEEEEEcCC
Confidence 54 2222222 348898888775
No 18
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=94.95 E-value=0.014 Score=68.15 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=69.3
Q ss_pred eEeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEe
Q 009825 33 DVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTC 112 (524)
Q Consensus 33 ~~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~ 112 (524)
...+||.++|++++...-.. . -.....+.||++...+.+ +++.- ..+.||||. .+...||.++.||++|||-++.
T Consensus 392 ~~aspG~a~G~v~~~~~~a~-~-~~~~~~~~ILV~~~t~P~-d~~~~-~~a~Givt~-~GG~tSHaAivAR~lgiP~VvG 466 (856)
T TIGR01828 392 LPASPGAATGKIVFSAEDAV-E-LAEKGKKVILVREETSPE-DIEGM-HVAEGILTA-RGGMTSHAAVVARGMGKCCVSG 466 (856)
T ss_pred cccCCCeEEEEEEEchHHHH-H-HhhcCCCEEEEECCCCHH-HHhhh-hhheEEEEc-cCCCcchHHHHHHHcCCCEEEc
Confidence 46799999999887633111 1 113466789999888777 57753 578999855 5568999999999999999876
Q ss_pred cCchhHHH---------HHhhcCCeEEEEEcCCceEe
Q 009825 113 EDDEKVSD---------IERLAGKYVRLEASSTCVNL 140 (524)
Q Consensus 113 ~d~~~~~~---------l~~~~g~~V~l~~~~~~~~~ 140 (524)
-....++. -.-.+|.+|.+..+. |..+
T Consensus 467 ~~~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~-G~V~ 502 (856)
T TIGR01828 467 CEELKINEEAKTFTIGGRVFHEGDIISIDGST-GEIY 502 (856)
T ss_pred ccccccccccceeeeCCeEecCCCEEEEECCC-CEEE
Confidence 53322111 112358888887764 4444
No 19
>PRK05865 hypothetical protein; Provisional
Probab=94.53 E-value=0.044 Score=63.91 Aligned_cols=96 Identities=18% Similarity=0.119 Sum_probs=71.4
Q ss_pred EeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEec
Q 009825 34 VLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCE 113 (524)
Q Consensus 34 ~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~ 113 (524)
.+++|.+.|++++|+. .. ....+.+.||++...+-. .+|.- ..+.|||| ..+..+||.++-||++|||-+.+-
T Consensus 740 ~~s~G~v~G~vrvv~~---~~-~~~~~~g~ILVa~~tdp~-~~~~~-~~a~giVt-e~Gg~~SH~AIvARe~gIPaVvgv 812 (854)
T PRK05865 740 GVCGGRVRGRVRIVRP---ET-IDDLQPGEILVAEVTDVG-YTAAF-CYAAAVVT-ELGGPMSHAAVVAREFGFPCVVDA 812 (854)
T ss_pred eccCCccEEEEEEecH---HH-hhhcCCCeEEEeCCCCHH-HHHHH-HHheEEEe-ccCCCccHHHHHHHHcCCCEEEcc
Confidence 4578889999999962 22 135577899999988876 36653 78999985 466789999999999999999766
Q ss_pred CchhHHHHHh-hcCCeEEEEEcCCceEe
Q 009825 114 DDEKVSDIER-LAGKYVRLEASSTCVNL 140 (524)
Q Consensus 114 d~~~~~~l~~-~~g~~V~l~~~~~~~~~ 140 (524)
.. . .+. .+|+.|.+.....-+.+
T Consensus 813 ~~-a---t~~l~dG~~V~vDg~~G~V~~ 836 (854)
T PRK05865 813 QG-A---TRFLPPGALVEVDGATGEIHV 836 (854)
T ss_pred cc-H---hhcCCCCCEEEEECCCcEEEE
Confidence 32 2 223 36999999888655544
No 20
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=94.15 E-value=0.024 Score=65.80 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=70.2
Q ss_pred eEeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEe
Q 009825 33 DVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTC 112 (524)
Q Consensus 33 ~~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~ 112 (524)
..++||.++|.++++..... + .....+.||+++..+-+ +++.- ..+.|||| ..+...||.++.||++|||-+.-
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~--~-~~~~~g~ILV~~~~~p~-~~~~l-~~~~givt-~~Gg~tSH~AilAR~lgIPavvg 433 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISE--M-DKVQPGDVLVTDMTDPD-WEPVM-KRASAIVT-NRGGRTCHAAIIARELGIPAVVG 433 (795)
T ss_pred cccCCCceeeEEEEeCCHHH--H-HhcCCCeEEEECCCCHH-HHHHH-HhheEEEE-cCCCCcchHHHHHHHcCCCEEEc
Confidence 46789999999999977443 2 24566789999988886 57654 78999984 56678999999999999997743
Q ss_pred cCchhHHHHHhhcCCeEEE---EEcCCceEe
Q 009825 113 EDDEKVSDIERLAGKYVRL---EASSTCVNL 140 (524)
Q Consensus 113 ~d~~~~~~l~~~~g~~V~l---~~~~~~~~~ 140 (524)
- .+....+ .+|..|.+ ... +|..+
T Consensus 434 ~-~~~~~~l--~~G~~v~v~~~Dg~-~G~v~ 460 (795)
T PRK06464 434 T-GNATEVL--KDGQEVTVSCAEGD-TGYVY 460 (795)
T ss_pred c-Cccccee--cCCCEEEEEeccCC-CcEEE
Confidence 3 2222222 34888888 444 34444
No 21
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=94.00 E-value=0.2 Score=43.00 Aligned_cols=99 Identities=22% Similarity=0.158 Sum_probs=72.6
Q ss_pred eEeeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEe
Q 009825 33 DVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTC 112 (524)
Q Consensus 33 ~~i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~ 112 (524)
|.|-.|.+.|+.++-+.-... +..++...||++.+.++| =+|. .....||| +.+.-.-||-+|-+++.|||.+.-
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~--~~k~~~g~iLv~~std~d-~v~~-~eKa~aiI-tee~glTshaAVvgl~LgvPvIvG 80 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEA--EQKFEEGVILVTPSTDAD-FVPA-LEKAAAII-TEEGGLTSHAAVVGLELGVPVIVG 80 (111)
T ss_pred eeecccceeeEEEEccCHhHh--hCCcccCcEEEeccCChh-hHHH-HHhhheeE-eccCCccccceeeEeecCCcEEEE
Confidence 677888999998888774432 345777899999988877 3554 46788998 556667899999999999999976
Q ss_pred cCchhHHHHHhhcCCeEEEEEcCCceEe
Q 009825 113 EDDEKVSDIERLAGKYVRLEASSTCVNL 140 (524)
Q Consensus 113 ~d~~~~~~l~~~~g~~V~l~~~~~~~~~ 140 (524)
.+...- . =-+|..|.+..+ .|+.+
T Consensus 81 ~~~at~-~--i~dG~~vTvD~~-rG~VY 104 (111)
T COG3848 81 VKKATQ-L--IRDGAIVTVDAQ-RGVVY 104 (111)
T ss_pred ecchhh-h--ccCCCEEEEecc-cceEE
Confidence 643321 1 235888877766 46655
No 22
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=92.41 E-value=0.12 Score=56.45 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=50.0
Q ss_pred CCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEEEcC
Q 009825 59 GDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASS 135 (524)
Q Consensus 59 ~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~~~~ 135 (524)
.++|.||+++..+--+=.--...+|.||+ +..+...||.+|.||.+|||-++--. +.+ ..-.+|..|-+....
T Consensus 394 ~~~~~ILVA~dLtPSd~a~Ld~~~V~Giv-t~~GG~TSHtAILARslgIPaVvg~~-~~~--~~~~~G~~vilDG~~ 466 (473)
T PRK11377 394 FNSPTILLAENIYPSTVLQLDPAVVKGIC-LSAGSPLSHSAIIARELGIGWICQQG-EKL--YAIQPEETLTLDVKT 466 (473)
T ss_pred CCCCEEEEECCCCHHHHHhcCHhHeEEEE-ECCCCcccHHHHHHHHcCCCEEEcch-hhH--hhccCCCEEEEECCC
Confidence 46788999886555432221236899998 56677899999999999999875442 222 223458888887664
No 23
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=91.74 E-value=0.15 Score=57.23 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCCCeEEEEeCCCCcccccc-cCCCeEEEEecCCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEEEcCCc
Q 009825 59 GDEPVILAVSKADGDEEVAA-AGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTC 137 (524)
Q Consensus 59 ~~~p~Il~~~~~~g~eeip~-~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~~~~~~ 137 (524)
.+.|.||+++..+-.+ ++. ...++.|||| ..+...||.++.||++|||-+..-. +.... -.+|+.|.+.....-
T Consensus 152 ~~~~~ILVa~~l~Ps~-~~~l~~~~i~Givt-~~Gg~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~ 226 (575)
T PRK11177 152 IQEEVILVAADLTPSE-TAQLNLKKVLGFIT-DIGGRTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQ 226 (575)
T ss_pred CCCCeEEEecCCCHHH-HhhhhhhheeEEEE-cCCCcccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCE
Confidence 4677899988877764 221 1268999995 4566799999999999999875543 22221 235999988877544
Q ss_pred eEeee
Q 009825 138 VNLNP 142 (524)
Q Consensus 138 ~~~~~ 142 (524)
+.+.+
T Consensus 227 v~~~P 231 (575)
T PRK11177 227 IYVNP 231 (575)
T ss_pred EEECC
Confidence 44443
No 24
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=91.27 E-value=0.18 Score=58.42 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCCCeEEEEeCCCCccccccc-CCCeEEEEecCCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEEEcCCc
Q 009825 59 GDEPVILAVSKADGDEEVAAA-GSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTC 137 (524)
Q Consensus 59 ~~~p~Il~~~~~~g~eeip~~-~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~~~~~~ 137 (524)
.+.|.||+++..+-. +++.. ..+|+||| +..+...||.++.||++|||.+.--+ .... ...|..|.+.....-
T Consensus 319 ~~~~~Ilva~~l~ps-~~~~l~~~~i~Giv-t~~Gg~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~ 392 (748)
T PRK11061 319 WPERFILVADELTAT-LLAELPQDRLAGVV-VRDGAANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGE 392 (748)
T ss_pred CCCCEEEEECCCCHH-HHHhhhhhheEEEE-ECCCCCccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCE
Confidence 467789998887777 44443 24899998 55567789999999999999875333 2222 235999988877544
Q ss_pred eEeee
Q 009825 138 VNLNP 142 (524)
Q Consensus 138 ~~~~~ 142 (524)
+.+.+
T Consensus 393 v~vnP 397 (748)
T PRK11061 393 LLVDP 397 (748)
T ss_pred EEeCC
Confidence 44544
No 25
>PRK03955 hypothetical protein; Reviewed
Probab=90.76 E-value=1.5 Score=39.57 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=63.4
Q ss_pred eEeeceeeeEEEEEecc-cCC--CCCCCC-------CC------CCeEEEEeCCCCc-------ccccccCCCeEEEEec
Q 009825 33 DVLVPGAAVGKLVQVDR-ISP--GSLSSS-------GD------EPVILAVSKADGD-------EEVAAAGSNILGVILL 89 (524)
Q Consensus 33 ~~i~~g~a~G~l~~v~~-l~~--~~~~~~-------~~------~p~Il~~~~~~g~-------eeip~~~~~V~gvi~~ 89 (524)
+++++|.+.|.+.+.++ |+- +.-+.+ -+ ...||+.....|- -|.---|..=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 57899999999888864 221 000111 11 3478888877776 0111111222788988
Q ss_pred CCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEEEcCCce
Q 009825 90 QELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCV 138 (524)
Q Consensus 90 ~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~~~~~~~ 138 (524)
...+.|+|-++-| +||.+...+ .+.|+ +|.+|++..+..-+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V 126 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEV 126 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEE
Confidence 8888999999999 999998666 33333 69998887554333
No 26
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=89.61 E-value=0.32 Score=54.51 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEEEcCCce
Q 009825 59 GDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCV 138 (524)
Q Consensus 59 ~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~~~~~~~ 138 (524)
.+.|.||+++..+-.+=+.-...++.||||. .+...||.++.||++|||-+..-. +.... -.+|..|.+.....-+
T Consensus 151 ~~~~~IlVa~~l~Ps~~~~l~~~~i~Givt~-~Gg~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v 226 (565)
T TIGR01417 151 IQDEVILVAEDLTPSETAQLNLKYVKGFLTD-AGGKTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIV 226 (565)
T ss_pred CCCCeEEEecCCCHHHHHHhhhhheeEEEEc-cCCCcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEE
Confidence 4677899988777664222123579999855 556899999999999999886543 22221 2359999988875444
Q ss_pred Eeee
Q 009825 139 NLNP 142 (524)
Q Consensus 139 ~~~~ 142 (524)
.+.+
T Consensus 227 ~~~P 230 (565)
T TIGR01417 227 IFNP 230 (565)
T ss_pred EeCC
Confidence 4433
No 27
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=86.77 E-value=0.69 Score=51.12 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEEEcCCc
Q 009825 58 SGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTC 137 (524)
Q Consensus 58 ~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~~~~~~ 137 (524)
..++|+||+++..+--+=.......|.|++ +..+-..||.++.||.++||-+.-...... .+ .+|+.|-+.....-
T Consensus 152 ~~~~~~IlvA~dLtPSdta~l~~~~v~Gfv-t~~GG~TSHtAImARsl~IPavVg~~~~~~-~v--~~g~~viiDg~~G~ 227 (574)
T COG1080 152 AIDEEVILVAEDLTPSDTAQLDKKYVKGFV-TDIGGRTSHTAILARSLGIPAVVGLGAATL-AV--KDGDTLILDGINGE 227 (574)
T ss_pred cCCCCeEEEECCCCHHHHhhcCHhhceeeE-ecCCCcccHHHHHHHhcCCCeeecCcHHhh-cc--cCCCEEEEECCCCe
Confidence 456778888886555544444467899998 667778999999999999999977754433 23 37998888877655
Q ss_pred eEeee
Q 009825 138 VNLNP 142 (524)
Q Consensus 138 ~~~~~ 142 (524)
+.+.+
T Consensus 228 vi~nP 232 (574)
T COG1080 228 VIVNP 232 (574)
T ss_pred EEECc
Confidence 55644
No 28
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=83.49 E-value=1.3 Score=51.33 Aligned_cols=74 Identities=23% Similarity=0.216 Sum_probs=57.6
Q ss_pred eeceeeeEEEEEecccCCCCCCCCCCCCeEEEEeCCCCcccccccCCCeEEEEecCCCCCccceeeeccCCceeEEEecC
Q 009825 35 LVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCED 114 (524)
Q Consensus 35 i~~g~a~G~l~~v~~l~~~~~~~~~~~p~Il~~~~~~g~eeip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d 114 (524)
.+||-+.|+++++.....- ...+.-+||+....+.| .+|. +.++.=|++..+-..||-+|.||.+|+|-+.--.
T Consensus 342 a~~g~~~G~v~~~~d~~e~---~~~~~g~iLv~~~t~pd-~~~~--m~~a~~Ivt~~Gg~tshaaivaRe~g~Pavvg~~ 415 (740)
T COG0574 342 ASPGIASGRVKIILDVSEM---EKLEHGDILVTPMTDPD-WVPL--MKVAGAIVTDRGGMTSHAAIVARELGIPAVVGTG 415 (740)
T ss_pred ccCCceeEEEEEEecHHHh---cccccCceEEeecCCHH-Hhhh--hhhccceEEcCCCccccchhhhhhcCCCeEEcCc
Confidence 8899999998888775532 34446689998888887 6775 5565544589999999999999999999885443
No 29
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=75.48 E-value=1.5 Score=48.62 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=51.4
Q ss_pred CCCCCCCeEEEEeCCCCcc--cccccCCCeEEEEecCCCCCccceeeeccCCceeEEEecCchhHHHHHhhcCCeEEEE
Q 009825 56 SSSGDEPVILAVSKADGDE--EVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLE 132 (524)
Q Consensus 56 ~~~~~~p~Il~~~~~~g~e--eip~~~~~V~gvi~~~~~~~LSHv~vrAR~~~v~~a~~~d~~~~~~l~~~~g~~V~l~ 132 (524)
...++++.||+++..+--| |.|- .+.+||+ ..++-.-||++|.||.+|||-+-- -.+. .....+|+.+-+.
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr--~rL~GvV-l~dGaanSH~aIvaRAmGIP~V~~-a~~i--~~~~~n~~~~IVD 395 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPR--DRLRGVV-LEDGAANSHAAIVARAMGIPTVMG-AAGI--VPSVLNGDALIVD 395 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCch--hhheeee-eecCcccchHHHHHHhcCCceecc-ccCc--chhhhcCCcEEEE
Confidence 4578999999999766543 6775 6899998 667788899999999999998843 1111 1345566654443
No 30
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=51.24 E-value=36 Score=33.19 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhC--CCEEEEEEEE--CCeEEEEeeec
Q 009825 482 RQLGQRLCSVGFFLERKFG--CPQDVEGCLV--GKDIYAVQTRP 521 (524)
Q Consensus 482 ~~~~~~La~~a~~lE~~fg--~pqDIEw~i~--~~~l~IlQ~RP 521 (524)
+++.++|.+.+.+|-+.+| .+--|||+++ ++++|++..-|
T Consensus 135 ~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 135 DEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred hHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC
Confidence 3457889999999999987 5999999999 57799999876
No 31
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=27.75 E-value=1.8e+02 Score=24.87 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.8
Q ss_pred ccCCeEEECHHHHHHHHHhcC
Q 009825 235 LVPAGVVIPFGSMQLALEQSK 255 (524)
Q Consensus 235 ~VP~gfvIpf~~f~~~l~~~~ 255 (524)
+-|.+.|||...|+.+|+.-+
T Consensus 34 N~PafY~Vpa~~yE~m~e~Le 54 (97)
T PRK09778 34 NRPAGYLLSASAFEALMDMLA 54 (97)
T ss_pred CceeEEEeCHHHHHHHHHHHH
Confidence 479999999999999887653
No 32
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=22.11 E-value=1.8e+02 Score=26.64 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=38.1
Q ss_pred CCCCCeEEEEeCCCCcccc-ccc-----CCCeEEEEecCCCC-----------CccceeeeccCCceeEEEecCchhHHH
Q 009825 58 SGDEPVILAVSKADGDEEV-AAA-----GSNILGVILLQELP-----------HLSHLGVRARQEKVVFVTCEDDEKVSD 120 (524)
Q Consensus 58 ~~~~p~Il~~~~~~g~eei-p~~-----~~~V~gvi~~~~~~-----------~LSHv~vrAR~~~v~~a~~~d~~~~~~ 120 (524)
+++-..|+++..++-...+ |.. ..+|+||||.-+.+ .|.+-++. +|-.+...+.+.+++
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEE 136 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHH
Confidence 4666788888877766554 322 46899999987776 24444432 344444455555555
Q ss_pred HHhh
Q 009825 121 IERL 124 (524)
Q Consensus 121 l~~~ 124 (524)
|+.+
T Consensus 137 L~~~ 140 (143)
T PF10662_consen 137 LKDY 140 (143)
T ss_pred HHHH
Confidence 5544
Done!